Query psy7160
Match_columns 67
No_of_seqs 131 out of 527
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 19:43:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7160.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7160hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqi_A GMP synthase [glutamine 99.8 1.2E-21 4.2E-26 148.4 3.5 56 2-59 456-518 (527)
2 2vxo_A GMP synthase [glutamine 99.8 1.1E-20 3.8E-25 148.3 5.0 60 2-66 518-577 (697)
3 3uow_A GMP synthetase; structu 99.8 2.7E-20 9.3E-25 142.3 2.5 56 2-59 485-547 (556)
4 2ywb_A GMP synthase [glutamine 99.8 5.4E-20 1.8E-24 138.3 3.0 56 2-59 432-494 (503)
5 1gpm_A GMP synthetase, XMP ami 99.8 4.5E-20 1.5E-24 139.5 2.2 56 2-59 454-516 (525)
6 2dpl_A GMP synthetase, GMP syn 99.7 1.8E-18 6.2E-23 123.5 3.1 56 2-59 237-299 (308)
7 2vxo_A GMP synthase [glutamine 98.5 8.2E-08 2.8E-12 75.6 3.4 47 9-58 630-687 (697)
8 3tqi_A GMP synthase [glutamine 20.2 40 0.0014 25.2 1.5 23 26-48 490-512 (527)
9 1oey_A P67-PHOX, neutrophil cy 19.5 70 0.0024 18.9 2.2 24 13-36 11-35 (83)
10 3hwc_A Chlorophenol-4-monooxyg 14.0 67 0.0023 24.3 1.4 12 52-63 15-26 (515)
No 1
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.83 E-value=1.2e-21 Score=148.35 Aligned_cols=56 Identities=21% Similarity=0.539 Sum_probs=41.6
Q ss_pred ceeeeeeCCCccccceEEEecc---C--CCCCcch--HHHHHHhhhhhccCCCCCcceEEEecCc
Q psy7160 2 LRSICSQGDCRSYNYVVGISCE---K--EPDWTDL--AVIARIVPKAKDKESKKETNNITLMRGQ 59 (67)
Q Consensus 2 VkSVGVqGD~RtY~y~i~LRa~---D--~a~w~~L--e~La~is~ri~n~Vnr~~vnRVvy~~g~ 59 (67)
+||||||||+|||+|+++|||+ | ||+|++| ++|+++|+||+||| +|||||||=-.+
T Consensus 456 ~~~~gv~~d~r~~~~~~~~r~~~~~d~m~~~~~~~~~~~~~~~~~~i~~~~--~~~~~v~~~~~~ 518 (527)
T 3tqi_A 456 LKSVGVKGDARHYGYIIALRAVKTVDFMTAQWADLPHEFLSKVSHRIVNEI--KEVSRVVYDMTN 518 (527)
T ss_dssp EEEC--------CEEEEEEEEEC-------CBCCCCHHHHHHHHHHHHHHS--SSCCCEEEECCC
T ss_pred ccccccCCCccccCeeEEEEeecCCCcccCCcccCCHHHHHHHHHHHhhcC--CCCCeEEEeCCC
Confidence 6999999999999999999994 5 4999998 99999999999999 999999996543
No 2
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.81 E-value=1.1e-20 Score=148.28 Aligned_cols=60 Identities=37% Similarity=0.774 Sum_probs=57.3
Q ss_pred ceeeeeeCCCccccceEEEeccCCCCCcchHHHHHHhhhhhccCCCCCcceEEEecCcccCCCCC
Q psy7160 2 LRSICSQGDCRSYNYVVGISCEKEPDWTDLAVIARIVPKAKDKESKKETNNITLMRGQVSSDGVP 66 (67)
Q Consensus 2 VkSVGVqGD~RtY~y~i~LRa~D~a~w~~Le~La~is~ri~n~Vnr~~vnRVvy~~g~~~~~~~~ 66 (67)
|||||||||+|||+|+++||+.+.++|+.|++|++.++|+|++| |||||+||+++++.++
T Consensus 518 ~~svgv~gd~r~y~~~~~l~~~~~~~w~~~~~~~~~i~~~~~~~-----nrv~~~~~~~~~~~~~ 577 (697)
T 2vxo_A 518 IKTVGVQGDCRSYSYVCGISSKDEPDWESLIFLARLIPRMCHNV-----NRVVYIFGPPVKEPPT 577 (697)
T ss_dssp EEEEEEETTEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHBTTE-----EEEEEECSSCCSSCCS
T ss_pred CceeeeCCCCccccceEEEecCCCCchHHHHHHHhhcchhcccc-----ceeEeecCcccccccc
Confidence 79999999999999999999877899999999999999999999 9999999999998765
No 3
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.78 E-value=2.7e-20 Score=142.29 Aligned_cols=56 Identities=23% Similarity=0.473 Sum_probs=43.6
Q ss_pred ceeeeeeCCCccccceEEEec---cC--CCCCcch--HHHHHHhhhhhccCCCCCcceEEEecCc
Q psy7160 2 LRSICSQGDCRSYNYVVGISC---EK--EPDWTDL--AVIARIVPKAKDKESKKETNNITLMRGQ 59 (67)
Q Consensus 2 VkSVGVqGD~RtY~y~i~LRa---~D--~a~w~~L--e~La~is~ri~n~Vnr~~vnRVvy~~g~ 59 (67)
+||||||||+|||+|+++||| .| ||+|++| ++|+++|+||+||| +|||||||=-.+
T Consensus 485 ~~~~g~~~~~~~~~~~~~~r~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 547 (556)
T 3uow_A 485 SKSVGVRGDARSYDYVCVLRAVKTSSFMTANWYQIPYDILDKITTRILSEV--KGVNRILYDVSS 547 (556)
T ss_dssp EEEC--------CEEEEEEEEEEESSSSCEEECCCCHHHHHHHHHHHHHHS--TTEEEEEEECCC
T ss_pred ccccccCCCccCCCCeEEEeeecCCCCcccCcccCCHHHHHHHHHHHhhcC--CCCCeEEeeCCC
Confidence 699999999999999999999 45 4999998 99999999999999 999999996544
No 4
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.78 E-value=5.4e-20 Score=138.34 Aligned_cols=56 Identities=23% Similarity=0.465 Sum_probs=39.5
Q ss_pred ceeeeeeCCCccccceEEEec---cC--CCCCcch--HHHHHHhhhhhccCCCCCcceEEEecCc
Q psy7160 2 LRSICSQGDCRSYNYVVGISC---EK--EPDWTDL--AVIARIVPKAKDKESKKETNNITLMRGQ 59 (67)
Q Consensus 2 VkSVGVqGD~RtY~y~i~LRa---~D--~a~w~~L--e~La~is~ri~n~Vnr~~vnRVvy~~g~ 59 (67)
+||||||||+|||+|+++||| .| +|+|++| ++|.++|+||+||| +|||||+|=--+
T Consensus 432 ~~~~g~~gd~r~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~ 494 (503)
T 2ywb_A 432 VRSVGVAGDERKYGYVLALRAVTTEDFMTADWARLPLEFLDEAARRITRRV--PEIGRVVYDLTS 494 (503)
T ss_dssp C------------CEEEEEEEEECSSSSCBEECCCCHHHHHHHHHHHHHHC--TTCCEEEEECCC
T ss_pred cceeeccCCccccceeEEEEEeccCCccccCccCCCHHHHHHHHHHHHhcC--CCcceEEeeCCC
Confidence 699999999999999999999 45 4999997 99999999999999 999999996543
No 5
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.77 E-value=4.5e-20 Score=139.55 Aligned_cols=56 Identities=20% Similarity=0.411 Sum_probs=51.4
Q ss_pred ceeeeeeCCCccccceEEEecc---CC--CCCcch--HHHHHHhhhhhccCCCCCcceEEEecCc
Q psy7160 2 LRSICSQGDCRSYNYVVGISCE---KE--PDWTDL--AVIARIVPKAKDKESKKETNNITLMRGQ 59 (67)
Q Consensus 2 VkSVGVqGD~RtY~y~i~LRa~---D~--a~w~~L--e~La~is~ri~n~Vnr~~vnRVvy~~g~ 59 (67)
+||||||||+|||+|+++||++ |+ |+|++| ++|.++|+||+||| +|||||||=-.+
T Consensus 454 ~~~~g~~~~~r~~~~~~~~~~~~~~d~m~~~~~~~~~~~~~~~~~~i~~~~--~~~~~v~~~~~~ 516 (525)
T 1gpm_A 454 VRSVGVMGDGRKYDWVVSLRAVETIDFMTAHWAHLPYDFLGRVSNRIINEV--NGISRVVYDISG 516 (525)
T ss_dssp EEEECCTTTCCSEEEEEEEEEEEEEETTEEEECCCCHHHHHHHHHHHHHHS--TTEEEEEEECCC
T ss_pred cceeeecCCccccceEEEEEEEcccccccCCcccCCHHHHHHHHHHHHhcC--CCcceEEeeCCC
Confidence 6999999999999999999994 53 999997 99999999999999 999999996543
No 6
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=99.72 E-value=1.8e-18 Score=123.55 Aligned_cols=56 Identities=16% Similarity=0.286 Sum_probs=51.4
Q ss_pred ceeeeeeCCCccccceEEEec---cC--CCCCcch--HHHHHHhhhhhccCCCCCcceEEEecCc
Q psy7160 2 LRSICSQGDCRSYNYVVGISC---EK--EPDWTDL--AVIARIVPKAKDKESKKETNNITLMRGQ 59 (67)
Q Consensus 2 VkSVGVqGD~RtY~y~i~LRa---~D--~a~w~~L--e~La~is~ri~n~Vnr~~vnRVvy~~g~ 59 (67)
++|||||||+|+|+|+++||+ .| +|+|.+| ++|.++++||+|+| +|||||+|=--+
T Consensus 237 v~~~~~~gd~r~y~~~~~~r~~~~~d~mt~~~~~~~~~~~~~~~~~i~~~~--~~~~~v~~~~~~ 299 (308)
T 2dpl_A 237 VKTVGVQGDIRAYKETIAVRIVESIDGMTANAMNVPWEVLQRIAFRITSEI--PEVGRVLYDITN 299 (308)
T ss_dssp CCEEEESSSSEEEEEEEEEEEEECSSSSSBEECCCCHHHHHHHHHHHHHHC--TTEEEEEEECCC
T ss_pred ceeeeecCCcccccceEEEEEEccCccccCCcccCCHHHHHHHHHHHHhcC--CCcceEEeeCCC
Confidence 689999999999999999999 35 4999998 99999999999999 999999996543
No 7
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=98.46 E-value=8.2e-08 Score=75.59 Aligned_cols=47 Identities=15% Similarity=0.053 Sum_probs=42.0
Q ss_pred CCCccccceEEEec---cC--CCCCc----ch--HHHHHHhhhhhccCCCCCcceEEEecC
Q psy7160 9 GDCRSYNYVVGISC---EK--EPDWT----DL--AVIARIVPKAKDKESKKETNNITLMRG 58 (67)
Q Consensus 9 GD~RtY~y~i~LRa---~D--~a~w~----~L--e~La~is~ri~n~Vnr~~vnRVvy~~g 58 (67)
++.+||.+.++||+ .| ||+|+ +| ++|.+++++| |+| +|||||+|=--
T Consensus 630 ~~~~~~~~~v~~r~~~~~d~mt~~~~~~~~~~p~~~l~~~~~~i-~~~--~~i~rv~yd~t 687 (697)
T 2vxo_A 630 QKQPSCQRSVVIRTFITSDFMTGIPATPGNEIPVEVVLKMVTEI-KKI--PGISRIMYDLT 687 (697)
T ss_dssp GTCCCCCEEEEECCBBCSSSSSBBCCCBTTTBCHHHHHHHHHHH-HHS--TTEEEEEEECC
T ss_pred ccCCccceeEEEEEEcccCCceeeecCcCCCCCHHHHHHHHHHH-hcc--CCcceEEccCC
Confidence 68999999999999 45 39999 66 9999999999 999 99999999543
No 8
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=20.23 E-value=40 Score=25.20 Aligned_cols=23 Identities=9% Similarity=0.008 Sum_probs=21.1
Q ss_pred CCCcchHHHHHHhhhhhccCCCC
Q psy7160 26 PDWTDLAVIARIVPKAKDKESKK 48 (67)
Q Consensus 26 a~w~~Le~La~is~ri~n~Vnr~ 48 (67)
-+|+-|+.+++.+.+.+..|||.
T Consensus 490 ~~~~~~~~~~~~i~~~~~~~~~v 512 (527)
T 3tqi_A 490 LPHEFLSKVSHRIVNEIKEVSRV 512 (527)
T ss_dssp CCHHHHHHHHHHHHHHSSSCCCE
T ss_pred CCHHHHHHHHHHHhhcCCCCCeE
Confidence 37999999999999999999985
No 9
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=19.51 E-value=70 Score=18.87 Aligned_cols=24 Identities=13% Similarity=0.448 Sum_probs=15.5
Q ss_pred cccceEEEeccCCCCCcch-HHHHH
Q psy7160 13 SYNYVVGISCEKEPDWTDL-AVIAR 36 (67)
Q Consensus 13 tY~y~i~LRa~D~a~w~~L-e~La~ 36 (67)
.|.|+++||....+++..| +.|+.
T Consensus 11 ~~~~tvairvp~~~~y~~L~~~l~~ 35 (83)
T 1oey_A 11 HYKYTVVMKTQPGLPYSQVRDMVSK 35 (83)
T ss_dssp ESSSEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEEEEEECCCCCCHHHHHHHHHH
Confidence 4778999997544556655 44443
No 10
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Probab=14.03 E-value=67 Score=24.29 Aligned_cols=12 Identities=0% Similarity=0.130 Sum_probs=10.9
Q ss_pred eEEEecCcccCC
Q psy7160 52 NITLMRGQVSSD 63 (67)
Q Consensus 52 RVvy~~g~~~~~ 63 (67)
|.||+.|+.++|
T Consensus 15 r~vy~~Ge~V~d 26 (515)
T 3hwc_A 15 RVVWVGNEKIDN 26 (515)
T ss_dssp CEEEETTEEESC
T ss_pred CeEEECCEEccC
Confidence 889999999976
Done!