RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7160
         (67 letters)



>gnl|CDD|238955 cd01997, GMP_synthase_C, The C-terminal domain of GMP synthetase.
           It contains two subdomains; the ATP pyrophosphatase
           domain which closes to the N-termial and the
           dimerization domain at C-terminal end. The ATP-PPase is
           a twisted, five-stranded parallel beta-sheet sandwiched
           between helical layers. It has a signature
           nucleotide-binding motif, or P-loop, at the end of the
           first-beta strand.The dimerization domain formed by the
           C-terminal 115 amino acid for prokaryotic proteins. It
           is adjacent to teh ATP-binding site of the ATP-PPase
           subdomain. The largest difference between the primary
           sequence of prokaryotic and eukaryotic GMP synthetase
           map to the dimerization domain.Eukaryotic GMP synthetase
           has several large insertions relative to prokaryotes.
          Length = 295

 Score = 27.1 bits (61), Expect = 0.51
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 8   QGDCRSYNYVVGI 20
            GD R+Y YVV +
Sbjct: 231 MGDQRTYGYVVAL 243


>gnl|CDD|201527 pfam00958, GMP_synt_C, GMP synthase C terminal domain.  GMP
          synthetase is a glutamine amidotransferase from the de
          novo purine biosynthetic pathway. This family is the
          C-terminal domain specific to the GMP synthases
          EC:6.3.5.2. In prokaryotes this domain mediates
          dimerisation. Eukaryotic GMP synthases are monomers.
          This domain in eukaryotes includes several large
          insertions that may form globular domains.
          Length = 93

 Score = 26.6 bits (60), Expect = 0.53
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 8  QGDCRSYNYVVGI 20
           GD R+Y YVV +
Sbjct: 29 MGDGRTYGYVVAL 41


>gnl|CDD|203489 pfam06644, ATP11, ATP11 protein.  This family consists of several
           eukaryotic ATP11 proteins. In Saccharomyces cerevisiae,
           expression of functional F1-ATPase requires two proteins
           encoded by the ATP11 and ATP12 genes. Atp11p is a
           molecular chaperone of the mitochondrial matrix that
           participates in the biogenesis pathway to form F1, the
           catalytic unit of the ATP synthase.
          Length = 250

 Score = 26.6 bits (59), Expect = 0.80
 Identities = 6/15 (40%), Positives = 9/15 (60%)

Query: 49  ETNNITLMRGQVSSD 63
           +   I LMRG+V + 
Sbjct: 184 KDKGIVLMRGEVETK 198


>gnl|CDD|173104 PRK14641, PRK14641, hypothetical protein; Provisional.
          Length = 173

 Score = 25.1 bits (55), Expect = 2.5
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 36  RIVPKAKDKESKK-ETNNITLMRGQVS 61
            + P+ K K+ K+ ET NITL    V 
Sbjct: 139 VLKPEQKKKKGKQEETENITLELDAVI 165


>gnl|CDD|223593 COG0519, GuaA, GMP synthase, PP-ATPase domain/subunit [Nucleotide
           transport and metabolism].
          Length = 315

 Score = 24.8 bits (55), Expect = 3.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 3   RSICSQGDCRSYNYVVGI 20
           +S+   GD R+Y YVV +
Sbjct: 245 KSVGVMGDGRTYGYVVAL 262


>gnl|CDD|227376 COG5043, MRS6, Vacuolar protein sorting-associated protein
           [Intracellular trafficking and secretion].
          Length = 2552

 Score = 24.5 bits (53), Expect = 5.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 5   ICSQGDCRSYNYVVGISCEK 24
           ICS  D RS NY+V +   +
Sbjct: 839 ICSGLDSRSENYLVPVLRAR 858


>gnl|CDD|234614 PRK00074, guaA, GMP synthase; Reviewed.
          Length = 511

 Score = 23.9 bits (53), Expect = 8.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 8   QGDCRSYNYVVGI 20
            GD R+Y+YVV +
Sbjct: 446 MGDGRTYDYVVAL 458


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.315    0.131    0.389 

Gapped
Lambda     K      H
   0.267   0.0702    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,156,984
Number of extensions: 211432
Number of successful extensions: 170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 8
Length of query: 67
Length of database: 10,937,602
Length adjustment: 38
Effective length of query: 29
Effective length of database: 9,252,150
Effective search space: 268312350
Effective search space used: 268312350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.2 bits)