RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7160
         (67 letters)



>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene,
           phosphoprotein, GMP synthetase, guanine monophosphate
           synthetase, chromosomal rearrangement; HET: XMP; 2.5A
           {Homo sapiens}
          Length = 697

 Score = 48.8 bits (117), Expect = 6e-09
 Identities = 20/33 (60%), Positives = 26/33 (78%)

Query: 8   QGDCRSYNYVVGISCEKEPDWTDLAVIARIVPK 40
           QGDCRSY+YV GIS + EPDW  L  +AR++P+
Sbjct: 524 QGDCRSYSYVCGISSKDEPDWESLIFLARLIPR 556


>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B;
           pyrococcus horikoshii OT3, structural genomics, NPPSFA;
           1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
          Length = 308

 Score = 24.4 bits (54), Expect = 2.9
 Identities = 5/19 (26%), Positives = 12/19 (63%)

Query: 2   LRSICSQGDCRSYNYVVGI 20
           ++++  QGD R+Y   + +
Sbjct: 237 VKTVGVQGDIRAYKETIAV 255


>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic
           ribonucleotide reductase, nucleotide analogs, all enzyme
           ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces
           cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A*
           1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A*
           3paw_A 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A*
          Length = 888

 Score = 24.5 bits (53), Expect = 3.1
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 23  EKEPDWTDLAVIARIVPKAKDKESKKETNNITLMR 57
              PD+  LA  ARI      K++ K+ + +    
Sbjct: 69  TVHPDYATLA--ARIAISNLHKQTTKQFSKVVEDL 101


>3uow_A GMP synthetase; structural genomics consortium, SGC, purine
           nucleotide biosy process, ligase; HET: XMP; 2.72A
           {Plasmodium falciparum}
          Length = 556

 Score = 24.1 bits (53), Expect = 3.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 8   QGDCRSYNYVVGI 20
           +GD RSY+YV  +
Sbjct: 491 RGDARSYDYVCVL 503


>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding,
           ATP binding, purine nucleotide biosynthetic pathway,
           structural genomics; 2.10A {Thermus thermophilus} PDB:
           2ywc_A*
          Length = 503

 Score = 23.6 bits (52), Expect = 5.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 3   RSICSQGDCRSYNYVVGI 20
           RS+   GD R Y YV+ +
Sbjct: 433 RSVGVAGDERKYGYVLAL 450


>3hnc_A Ribonucleoside-diphosphate reductase large subuni;
          oxidoreductase, ribonucleotide reductase, allosteric
          enzyme, binding, DNA replication; HET: TTP; 2.41A {Homo
          sapiens} PDB: 3hnd_A* 3hne_A* 3hnf_A*
          Length = 792

 Score = 23.7 bits (51), Expect = 5.6
 Identities = 8/15 (53%), Positives = 9/15 (60%), Gaps = 2/15 (13%)

Query: 23 EKEPDWTDLAVIARI 37
           K PD+  LA  ARI
Sbjct: 69 TKHPDYAILA--ARI 81


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.315    0.131    0.389 

Gapped
Lambda     K      H
   0.267   0.0784    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 983,028
Number of extensions: 41296
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 6
Length of query: 67
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 29
Effective length of database: 5,640,795
Effective search space: 163583055
Effective search space used: 163583055
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)