BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7163
(544 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|332016778|gb|EGI57599.1| Transcription factor RFX3 [Acromyrmex echinatior]
Length = 906
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 290/523 (55%), Positives = 343/523 (65%), Gaps = 98/523 (18%)
Query: 29 GNSKYHYYGIRVKPDSPL-----NNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTA 83
GNSKYHYYGIRVKP S L ++ ++ + + K++K +S+ Y + HT
Sbjct: 475 GNSKYHYYGIRVKPSSQLTVMNEDSTSRQQQSANSQAKRFKFNSQKQDSS-YENNAHTNT 533
Query: 84 GQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDC-LPEDCTIEDVDTFRSIYREHCEA 142
+ ++ SPQ H +LG+ S AIPDFP+I +S D LP+DCT+E
Sbjct: 534 NISANSSSPQY--HQYLGEASGAIPDFPDIFISHDSSLPKDCTLE--------------- 576
Query: 143 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 202
D T S++RE CE
Sbjct: 577 --------DIDTFRSIYRE-----------HCE--------------------------- 590
Query: 203 FLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFC 262
AFLDA++ +F+T+ESLWREFWRSQDNNNGDECEEEKYLSK+KL+
Sbjct: 591 --------------AFLDAVLNFEFATVESLWREFWRSQDNNNGDECEEEKYLSKTKLYQ 636
Query: 263 LSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGC 322
+ +C VQ F+++VD+ FYQNLV+VLIP+VLRPIP SLT SIRNFAKG+ESWL +AM C
Sbjct: 637 MCQCTGVQDFIKKVDYTFYQNLVDVLIPNVLRPIPSSLTQSIRNFAKGLESWLQSAMADC 696
Query: 323 PQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQ 382
P+EM IK+TAV AFAQ LRRYTSLNHLAQAARAVLQNS+QINQML DLNRVDFHNVQEQ
Sbjct: 697 PEEMTQIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNSSQINQMLADLNRVDFHNVQEQ 756
Query: 383 ASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQF 442
ASWVCQCD +VQ+LE+DFK+TLQQQNSLE+WA WLK VV LKP E KP F KAARQF
Sbjct: 757 ASWVCQCDYGMVQRLETDFKVTLQQQNSLEDWAIWLKGVVTQALKPHEEKPTFAKAARQF 816
Query: 443 LLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSK 502
LLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA+ATG TPIAV+G K
Sbjct: 817 LLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAIATGTTPIAVMGDK 876
Query: 503 ESN-PVESSQNPMDNGLYAHGQNNILVHEELHISHAPKRIKLS 544
N + +S NG + + PKRIKLS
Sbjct: 877 SQNYSLVNSFGATSNG-------------DASNTSQPKRIKLS 906
>gi|307200848|gb|EFN80901.1| Transcription factor RFX3 [Harpegnathos saltator]
Length = 866
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 281/485 (57%), Positives = 327/485 (67%), Gaps = 88/485 (18%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR--------GKKYKLVKTDSNSNQYGSEGH 80
GNSKYHYYGIRVKP SPL + +E+G+ R K++K V S+ Y + H
Sbjct: 437 GNSKYHYYGIRVKPSSPL---VMLNEDGTSRQPQSANSQAKRFKFVNQKQESS-YENNTH 492
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
T+ ++++ PQ H +LG+ S AIPDFPE I+ H
Sbjct: 493 TSTNISSNSSPPQ--YHQYLGEASGAIPDFPE----------------------IFIGHD 528
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 200
+ + D T S++RE CE
Sbjct: 529 SSLPEDCTLEDIDTFRSIYRE-----------HCE------------------------- 552
Query: 201 VDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKL 260
AFLDA++ +F+T+ESLWREFWRSQDNNNGDECEEEKYLSK+KL
Sbjct: 553 ----------------AFLDAVLNFEFATVESLWREFWRSQDNNNGDECEEEKYLSKTKL 596
Query: 261 FCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQ 320
+ + KC VQ F+++VD+ FYQNLVEVL+P+VLRPIP SLT SIRNFAKG+ESWL +AM
Sbjct: 597 YQMCKCTGVQDFIKKVDYTFYQNLVEVLMPNVLRPIPSSLTQSIRNFAKGLESWLQSAMA 656
Query: 321 GCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQ 380
CP+EM IK+TAV AFAQ LRRYTSLNHLAQAARAVLQNS+QINQML DLNRVDFHNVQ
Sbjct: 657 DCPEEMTQIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNSSQINQMLADLNRVDFHNVQ 716
Query: 381 EQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAAR 440
EQASWVCQCD +VQ+LE+DFK+TLQQQNSLE+WA WLK VV VLKPFE KP F KAAR
Sbjct: 717 EQASWVCQCDYGMVQRLEADFKVTLQQQNSLEDWAIWLKGVVTQVLKPFEEKPTFAKAAR 776
Query: 441 QFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
QFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA+ATG TPIAV+G
Sbjct: 777 QFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAIATGTTPIAVMG 836
Query: 501 SKESN 505
K N
Sbjct: 837 DKSQN 841
>gi|110758942|ref|XP_395142.3| PREDICTED: transcription factor RFX3-like [Apis mellifera]
Length = 825
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 289/522 (55%), Positives = 342/522 (65%), Gaps = 96/522 (18%)
Query: 29 GNSKYHYYGIRVKPDSPL-----NNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTA 83
GNSKYHYYGIRVKP SPL + P +N + + K++K V ++ Y + H+
Sbjct: 394 GNSKYHYYGIRVKPSSPLVMLNEDGTPRQQQNTNSQTKRFKFVNQKQDTT-YENNPHSNT 452
Query: 84 GQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAF 143
+++N PQ H +LG+ S AIP+F PE I H +
Sbjct: 453 NISSNNSPPQY--HQYLGEASGAIPEF----------PE------------IIVGHSSSL 488
Query: 144 LDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDF 203
+ D T S++RE CE
Sbjct: 489 PEDCTLEDIDTFRSIYRE-----------HCE---------------------------- 509
Query: 204 LFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCL 263
AFLDA++ +F+T+ESLWREFWRSQDNNNGDECEEEKYLSK+KL+ +
Sbjct: 510 -------------AFLDAVLNFEFATVESLWREFWRSQDNNNGDECEEEKYLSKTKLYQM 556
Query: 264 SKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCP 323
KC VQ F+R+VD+ FYQNLVEVL+P+VLRPIP SLT SIRNFAKG+ESWLT+AM CP
Sbjct: 557 CKCSEVQDFIRKVDYTFYQNLVEVLMPNVLRPIPSSLTQSIRNFAKGLESWLTSAMADCP 616
Query: 324 QEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA 383
+EM IK+TAV AFAQ LRRYTSLNHLAQAARAVLQNS+QINQML DLNRVDFHNVQEQA
Sbjct: 617 EEMTQIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNSSQINQMLADLNRVDFHNVQEQA 676
Query: 384 SWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFL 443
SWVCQCD ++VQ+LE+DFK+TLQQQNSLE+WA WLK+VV VLKPFE KP F KAARQFL
Sbjct: 677 SWVCQCDYAMVQRLEADFKVTLQQQNSLEDWAIWLKSVVTKVLKPFEEKPTFAKAARQFL 736
Query: 444 LKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKE 503
LKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA+ATG TPIAV+G K
Sbjct: 737 LKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAVATGTTPIAVMGDKS 796
Query: 504 SN-PVESSQNPMDNGLYAHGQNNILVHEELHISHAPKRIKLS 544
N + S+ NG + ++ PKR+KLS
Sbjct: 797 QNCSLISAFGATSNG-------------DTSNANQPKRMKLS 825
>gi|380020466|ref|XP_003694104.1| PREDICTED: transcription factor RFX3-like [Apis florea]
Length = 825
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 280/482 (58%), Positives = 327/482 (67%), Gaps = 82/482 (17%)
Query: 29 GNSKYHYYGIRVKPDSPL-----NNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTA 83
GNSKYHYYGIRVKP SPL + P +N + + K++K V ++ Y + H+
Sbjct: 394 GNSKYHYYGIRVKPSSPLVMLNEDGTPRQQQNTNSQTKRFKFVNQKQDTT-YENNPHSNT 452
Query: 84 GQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAF 143
+++N PQ H +LG+ S AIP+F PE I H +
Sbjct: 453 NISSNNSPPQY--HQYLGEASGAIPEF----------PE------------IIVGHSSSL 488
Query: 144 LDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDF 203
+ D T S++RE CE
Sbjct: 489 PEDCTLEDIDTFRSIYRE-----------HCE---------------------------- 509
Query: 204 LFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCL 263
AFLDA++ +F+T+ESLWREFWRSQDNNNGDECEEEKYLSK+KL+ +
Sbjct: 510 -------------AFLDAVLNFEFATVESLWREFWRSQDNNNGDECEEEKYLSKTKLYQM 556
Query: 264 SKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCP 323
KC VQ F+R+VD+ FYQNLVEVL+P+VLRPIP SLT SIRNFAKG+ESWLT+AM CP
Sbjct: 557 CKCSEVQDFIRKVDYTFYQNLVEVLMPNVLRPIPSSLTQSIRNFAKGLESWLTSAMADCP 616
Query: 324 QEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA 383
+EM IK+TAV AFAQ LRRYTSLNHLAQAARAVLQNS+QINQML DLNRVDFHNVQEQA
Sbjct: 617 EEMTQIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNSSQINQMLADLNRVDFHNVQEQA 676
Query: 384 SWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFL 443
SWVCQCD ++VQ+LE+DFK+TLQQQNSLE+WA WLK+VV VLKPFE KP F KAARQFL
Sbjct: 677 SWVCQCDYAMVQRLEADFKVTLQQQNSLEDWAIWLKSVVTKVLKPFEEKPTFAKAARQFL 736
Query: 444 LKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKE 503
LKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA+ATG TPIAV+G K
Sbjct: 737 LKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAVATGTTPIAVMGDKS 796
Query: 504 SN 505
N
Sbjct: 797 QN 798
>gi|383851469|ref|XP_003701255.1| PREDICTED: transcription factor RFX3-like [Megachile rotundata]
Length = 868
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 278/482 (57%), Positives = 325/482 (67%), Gaps = 82/482 (17%)
Query: 29 GNSKYHYYGIRVKPDSPL-----NNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTA 83
GNSKYHYYGIRVKP SPL + P +N + + K++K V ++ Y + H+
Sbjct: 437 GNSKYHYYGIRVKPSSPLVMLNEDGTPRQQQNANSQTKRFKFVNQKQDAT-YENNTHSNT 495
Query: 84 GQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAF 143
+++ PQ H +LG+ S IP+F PE I H +
Sbjct: 496 NISSNTSPPQY--HQYLGEASGTIPEF----------PE------------IIVGHGSSL 531
Query: 144 LDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDF 203
+ D T S++RE CE
Sbjct: 532 PEDCTLEDIDTFRSIYRE-----------HCE---------------------------- 552
Query: 204 LFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCL 263
AFLDA++ +F+T+ESLWREFWRSQDNNNGDECEEEKYLSK+KL+ +
Sbjct: 553 -------------AFLDAVLNFEFATVESLWREFWRSQDNNNGDECEEEKYLSKTKLYQI 599
Query: 264 SKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCP 323
KC VQ F+R+VD+ FYQNLVEVL+P+VLRPIP SLT SIRNFAKG+ESWLT+AM CP
Sbjct: 600 CKCSEVQDFIRKVDYTFYQNLVEVLMPNVLRPIPSSLTQSIRNFAKGLESWLTSAMADCP 659
Query: 324 QEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA 383
+EM IK+TAV AFAQ LRRYTSLNHLAQAARAVLQNS+QINQML DLNRVDFHNVQEQA
Sbjct: 660 EEMTQIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNSSQINQMLADLNRVDFHNVQEQA 719
Query: 384 SWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFL 443
SWVCQCD ++VQ+LE+DFK+TLQQQNSLE+WA WLK+VV VLKPFE KP F KAARQFL
Sbjct: 720 SWVCQCDYAMVQRLEADFKVTLQQQNSLEDWAIWLKSVVTQVLKPFEEKPTFAKAARQFL 779
Query: 444 LKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKE 503
LKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA+ATG TPIAV+G K
Sbjct: 780 LKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAVATGTTPIAVMGDKS 839
Query: 504 SN 505
N
Sbjct: 840 QN 841
>gi|340726742|ref|XP_003401712.1| PREDICTED: transcription factor RFX3-like [Bombus terrestris]
Length = 825
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 282/485 (58%), Positives = 329/485 (67%), Gaps = 88/485 (18%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR--------GKKYKLVKTDSNSNQYGSEGH 80
GNSKYHYYGIRVKP SPL + +E+G+PR K++K V ++ Y + H
Sbjct: 394 GNSKYHYYGIRVKPSSPL---VMLNEDGTPRQQHGTNSQTKRFKFVNQKQDTT-YENNAH 449
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+ +++N PQ H +LG+ S AIP+F PE I H
Sbjct: 450 SNTNISSNNSPPQ--YHQYLGEASGAIPEF----------PE------------IIVGHG 485
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 200
+ + D T S++RE CE
Sbjct: 486 SSLPEDCTLEDIDTFRSIYRE-----------HCE------------------------- 509
Query: 201 VDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKL 260
AFLDA++ +F+T+ESLWREFWRSQDNNNGDECEEEKYLSK+KL
Sbjct: 510 ----------------AFLDAVLNFEFATVESLWREFWRSQDNNNGDECEEEKYLSKTKL 553
Query: 261 FCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQ 320
+ + KC VQ F+R+VD+ FYQNLVEVL+P+VLRPIP SLT SIRNFAKG+ESWLT+AM
Sbjct: 554 YQMCKCSEVQDFIRKVDYTFYQNLVEVLMPNVLRPIPSSLTQSIRNFAKGLESWLTSAMA 613
Query: 321 GCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQ 380
CP+EM IK+TAV AFAQ LRRYTSLNHLAQAARAVLQNS+QINQML DLNRVDFHNVQ
Sbjct: 614 DCPEEMTQIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNSSQINQMLADLNRVDFHNVQ 673
Query: 381 EQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAAR 440
EQASWVCQCD ++VQ+LE+DFK+TLQQQNSLE+WA WLK+VV VLKPFE KP F KAAR
Sbjct: 674 EQASWVCQCDYAMVQRLEADFKVTLQQQNSLEDWAIWLKSVVTQVLKPFEEKPTFAKAAR 733
Query: 441 QFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
QFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA+ATG TPIAV+G
Sbjct: 734 QFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAVATGTTPIAVMG 793
Query: 501 SKESN 505
K N
Sbjct: 794 DKSQN 798
>gi|350424614|ref|XP_003493854.1| PREDICTED: transcription factor RFX3-like [Bombus impatiens]
Length = 825
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 291/525 (55%), Positives = 343/525 (65%), Gaps = 102/525 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR--------GKKYKLVKTDSNSNQYGSEGH 80
GNSKYHYYGIRVKP SPL + +E+G+PR K++K V ++ Y + H
Sbjct: 394 GNSKYHYYGIRVKPSSPL---VMLNEDGTPRQQHGTNSQTKRFKFVNQKQDTT-YENNAH 449
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+ +++N PQ H +LG+ S AIP+F PE I H
Sbjct: 450 SNTNISSNNSPPQ--YHQYLGEASGAIPEF----------PE------------IIVGHG 485
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 200
+ + D T S++RE CE
Sbjct: 486 SSLPEDCTLEDIDTFRSIYRE-----------HCE------------------------- 509
Query: 201 VDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKL 260
AFLDA++ +F+T+ESLWREFWRSQDNNNGDECEEEKYLSK+KL
Sbjct: 510 ----------------AFLDAVLNFEFATVESLWREFWRSQDNNNGDECEEEKYLSKTKL 553
Query: 261 FCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQ 320
+ + KC VQ F+R+VD+ FYQNLVEVL+P+VLRPIP SLT SIRNFAKG+ESWLT+AM
Sbjct: 554 YQMCKCSEVQDFIRKVDYTFYQNLVEVLMPNVLRPIPSSLTQSIRNFAKGLESWLTSAMA 613
Query: 321 GCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQ 380
CP+EM IK+TAV AFAQ LRRYTSLNHLAQAARAVLQNS+QINQML DLNRVDFHNVQ
Sbjct: 614 DCPEEMTQIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNSSQINQMLADLNRVDFHNVQ 673
Query: 381 EQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAAR 440
EQASWVCQCD ++VQ+LE+DFK+TLQQQNSLE+WA WLK+VV VLKPFE KP F KAAR
Sbjct: 674 EQASWVCQCDYAMVQRLEADFKVTLQQQNSLEDWAIWLKSVVTQVLKPFEEKPTFAKAAR 733
Query: 441 QFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
QFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA+ATG TPIAV+G
Sbjct: 734 QFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAVATGTTPIAVMG 793
Query: 501 SKESN-PVESSQNPMDNGLYAHGQNNILVHEELHISHAPKRIKLS 544
K N + S+ NG + + PKR+KLS
Sbjct: 794 DKSQNCSLVSAFGATSNG-------------DASNTSQPKRMKLS 825
>gi|307176958|gb|EFN66264.1| Transcription factor RFX3 [Camponotus floridanus]
Length = 798
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 280/484 (57%), Positives = 328/484 (67%), Gaps = 85/484 (17%)
Query: 29 GNSKYHYYGIRVKPDSPL-----NNIPLSDENGSPRGKKYKLV--KTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKP SPL + ++ + + K++K V K +S+ N+ + +T
Sbjct: 367 GNSKYHYYGIRVKPSSPLLILNEDGTSRQQQSANSQAKRFKFVNQKQESSYNENNAHANT 426
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
+NS+P PQ H +LG+ S AIPDFPE I+ H
Sbjct: 427 NI-SSNSSP-PQY--HQYLGEASGAIPDFPE----------------------IFIGHDS 460
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
+ + D T S++RE CE
Sbjct: 461 SLPEDCTLEDIDTFRSIYRE-----------HCE-------------------------- 483
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLF 261
AFLDA+V +F+T+ESLWREFWRSQDNNNGDECEEEKYLSK+KL+
Sbjct: 484 ---------------AFLDAVVNFEFATVESLWREFWRSQDNNNGDECEEEKYLSKTKLY 528
Query: 262 CLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQG 321
+ KC VQ F+++VD+ FYQNLVEVL+P+VLRPIP SLT SIRNFAKG+ESWL +AM G
Sbjct: 529 QMCKCTGVQDFIKKVDYTFYQNLVEVLMPNVLRPIPSSLTQSIRNFAKGLESWLQSAMVG 588
Query: 322 CPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQE 381
CP+ ++ IK+TAV AFAQ LRRYTSLNHLAQAARAVLQN +QINQMLTDLNRVDFHNVQE
Sbjct: 589 CPEVLMQIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNPSQINQMLTDLNRVDFHNVQE 648
Query: 382 QASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQ 441
QASWVCQCD ++VQ+LE DFK TL+QQNSLE+WA WLK VV VLKPFE KP F KAARQ
Sbjct: 649 QASWVCQCDYAMVQRLEEDFKSTLRQQNSLEDWAIWLKGVVTRVLKPFEEKPTFAKAARQ 708
Query: 442 FLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGS 501
FLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA+ATG TPIAV+G
Sbjct: 709 FLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAIATGTTPIAVMGD 768
Query: 502 KESN 505
K N
Sbjct: 769 KSQN 772
>gi|322800170|gb|EFZ21255.1| hypothetical protein SINV_04732 [Solenopsis invicta]
Length = 779
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 274/480 (57%), Positives = 322/480 (67%), Gaps = 88/480 (18%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR--------GKKYKLVKTDSNSNQYGSEGH 80
GNSKYHYYGIRVKP SPL+ + +E+G+ R K++K V S+ Y + H
Sbjct: 369 GNSKYHYYGIRVKPSSPLSVL---NEDGTSRQQQSANSQTKRFKFVNQKQESS-YENNTH 424
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
T +N++ PQ H +LG+ S AIP+FPE I+ H
Sbjct: 425 TNTNISNNSSPPQY--HQYLGEASAAIPEFPE----------------------IFISHD 460
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 200
+ + D T S++RE CE
Sbjct: 461 SSLPEDCTLEDIDTFRSIYRE-----------HCE------------------------- 484
Query: 201 VDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKL 260
AFLDA++ +F+T+ESLWREFWRSQDNNNGDECEEEKYLSK+KL
Sbjct: 485 ----------------AFLDAVLNFEFATVESLWREFWRSQDNNNGDECEEEKYLSKTKL 528
Query: 261 FCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQ 320
+ + +C VQ F+++VD+ FYQNLV+VL+P+VLRPIP +LT SIRNFAKG+ESWL +AM
Sbjct: 529 YQMCQCTGVQDFIKKVDYTFYQNLVDVLMPNVLRPIPSTLTQSIRNFAKGLESWLQSAMA 588
Query: 321 GCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQ 380
CP+EM IK+TAV AFAQ LRRYTSLNHLAQAARAVLQNS QINQML DLNRVDFHNVQ
Sbjct: 589 DCPEEMTQIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNSNQINQMLADLNRVDFHNVQ 648
Query: 381 EQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAAR 440
EQASWVCQCD +VQ+LE+DFK+TLQQQNSLE+WA WLK VV LKP E KP F KAAR
Sbjct: 649 EQASWVCQCDYGMVQRLEADFKVTLQQQNSLEDWAIWLKGVVTQALKPHEEKPTFAKAAR 708
Query: 441 QFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
QFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA+ATG TPIAV+G
Sbjct: 709 QFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAIATGTTPIAVMG 768
>gi|328707503|ref|XP_003243416.1| PREDICTED: DNA-binding protein RFX2-like isoform 2 [Acyrthosiphon
pisum]
gi|328707505|ref|XP_003243417.1| PREDICTED: DNA-binding protein RFX2-like isoform 3 [Acyrthosiphon
pisum]
Length = 780
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 286/491 (58%), Positives = 327/491 (66%), Gaps = 100/491 (20%)
Query: 29 GNSKYHYYGIRVKPDSPLN------NIPLSDENGSPRGKKYKLVKTDS-NSNQYGSEGHT 81
GNSKYHYYGIR+K S LN N+P N S KK K +KT+ N NQY
Sbjct: 346 GNSKYHYYGIRIKASSLLNDFSSEENLP-GRTNQSSSSKKIKFIKTEERNCNQY------ 398
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSE------DCLPE--DCTIEDVDTFR 133
TNS+ S N+IP P+ E + +PE D ++++
Sbjct: 399 ---TTNSSDSANCSQ--------NSIPSSPQAQNQEYLGDGANAVPEFPDIILDEIQ--- 444
Query: 134 SIYREHCEAFLDAIVTL-DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCV 192
LD TL D T ++L+RE +
Sbjct: 445 ----------LDDNCTLEDVDTFKNLYREHY----------------------------- 465
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEE 252
+AFL AI+ L+F TIESLWREFWRSQDNNN DECEEE
Sbjct: 466 -----------------------EAFLGAILNLEFGTIESLWREFWRSQDNNN-DECEEE 501
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
KYLSK KL+ LSKC +Q FV+ VDFLFYQNLV+VLIPDVLRP+PG+LT +IRNF+KG+E
Sbjct: 502 KYLSKEKLYSLSKCKTLQLFVKTVDFLFYQNLVKVLIPDVLRPVPGTLTQAIRNFSKGLE 561
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
SWL +AMQGCP+EMI+IKVTAV AFAQ LRRYTSLNHLAQAARAVLQN TQINQMLTDLN
Sbjct: 562 SWLISAMQGCPEEMISIKVTAVSAFAQTLRRYTSLNHLAQAARAVLQNYTQINQMLTDLN 621
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD++LVQQLE+DFK TLQQQNSLEEWA WLK+VV+ LK +
Sbjct: 622 RVDFRNVQEQASWVCQCDSTLVQQLEADFKHTLQQQNSLEEWATWLKSVVDNCLKQYRDT 681
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
PNFTK ARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEH+VAL TG
Sbjct: 682 PNFTKEARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHEVALVTG 741
Query: 493 ETPIAVIGSKE 503
ETPIAV+GS +
Sbjct: 742 ETPIAVMGSGD 752
>gi|328707501|ref|XP_001943107.2| PREDICTED: DNA-binding protein RFX2-like isoform 1 [Acyrthosiphon
pisum]
Length = 763
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 286/491 (58%), Positives = 327/491 (66%), Gaps = 100/491 (20%)
Query: 29 GNSKYHYYGIRVKPDSPLN------NIPLSDENGSPRGKKYKLVKTDS-NSNQYGSEGHT 81
GNSKYHYYGIR+K S LN N+P N S KK K +KT+ N NQY
Sbjct: 329 GNSKYHYYGIRIKASSLLNDFSSEENLP-GRTNQSSSSKKIKFIKTEERNCNQY------ 381
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSE------DCLPE--DCTIEDVDTFR 133
TNS+ S N+IP P+ E + +PE D ++++
Sbjct: 382 ---TTNSSDSANCSQ--------NSIPSSPQAQNQEYLGDGANAVPEFPDIILDEIQ--- 427
Query: 134 SIYREHCEAFLDAIVTL-DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCV 192
LD TL D T ++L+RE +
Sbjct: 428 ----------LDDNCTLEDVDTFKNLYREHY----------------------------- 448
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEE 252
+AFL AI+ L+F TIESLWREFWRSQDNNN DECEEE
Sbjct: 449 -----------------------EAFLGAILNLEFGTIESLWREFWRSQDNNN-DECEEE 484
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
KYLSK KL+ LSKC +Q FV+ VDFLFYQNLV+VLIPDVLRP+PG+LT +IRNF+KG+E
Sbjct: 485 KYLSKEKLYSLSKCKTLQLFVKTVDFLFYQNLVKVLIPDVLRPVPGTLTQAIRNFSKGLE 544
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
SWL +AMQGCP+EMI+IKVTAV AFAQ LRRYTSLNHLAQAARAVLQN TQINQMLTDLN
Sbjct: 545 SWLISAMQGCPEEMISIKVTAVSAFAQTLRRYTSLNHLAQAARAVLQNYTQINQMLTDLN 604
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD++LVQQLE+DFK TLQQQNSLEEWA WLK+VV+ LK +
Sbjct: 605 RVDFRNVQEQASWVCQCDSTLVQQLEADFKHTLQQQNSLEEWATWLKSVVDNCLKQYRDT 664
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
PNFTK ARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEH+VAL TG
Sbjct: 665 PNFTKEARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHEVALVTG 724
Query: 493 ETPIAVIGSKE 503
ETPIAV+GS +
Sbjct: 725 ETPIAVMGSGD 735
>gi|156554603|ref|XP_001604716.1| PREDICTED: transcription factor RFX3-like isoform 1 [Nasonia
vitripennis]
Length = 806
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 231/290 (79%), Positives = 264/290 (91%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
+AFLDA++ +F+TIESLWREFWRSQDNNNGDECEEEKYLSK+KL+ + KC+ VQ F+++
Sbjct: 492 EAFLDAVLNFEFATIESLWREFWRSQDNNNGDECEEEKYLSKTKLYQMCKCIEVQGFIKK 551
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
VD+ FYQNLVEVL+PDVLRPIP LT SIRNFAKG+ESWLT+AM CP+EM+ IK++AV
Sbjct: 552 VDYTFYQNLVEVLMPDVLRPIPSPLTQSIRNFAKGLESWLTSAMNDCPEEMMQIKLSAVS 611
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQ 395
AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLNRVDFHNVQEQASWVCQCD S+VQ
Sbjct: 612 AFAQTLRRYTSLNHLAQAARAVLQNNSQINQMLADLNRVDFHNVQEQASWVCQCDYSVVQ 671
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIR 455
+LE+DFK+TLQQQNSLE+WA WLK+VV VL+P+EGKP F KAARQFLLKWSFYSSMVIR
Sbjct: 672 RLEADFKVTLQQQNSLEQWAVWLKSVVTQVLQPYEGKPTFAKAARQFLLKWSFYSSMVIR 731
Query: 456 DLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESN 505
DLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA++TG TPIAV+G K N
Sbjct: 732 DLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAVSTGTTPIAVMGDKSQN 781
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 115/208 (55%), Positives = 147/208 (70%), Gaps = 24/208 (11%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNS-----NQ--------- 74
GNSKYHYYGIRVKP SPL L +E+G+ R + ++ ++N NQ
Sbjct: 368 GNSKYHYYGIRVKPSSPL---VLLNEDGTSRQQATSNIQANNNKRVKFVNQKQTETTYET 424
Query: 75 ---YGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSE-DCLPEDCTIEDVD 130
+ + + +N++P PQ H +LG+ S AIP+FPEI + LPEDCT+EDVD
Sbjct: 425 TNTQTNNNNNSNISSNASP-PQ--YHQYLGEASCAIPEFPEIVVGHGSSLPEDCTLEDVD 481
Query: 131 TFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSK 190
TFRSIYREHCEAFLDA++ +F+TIESLWREFWRSQDNNNGDECEEEKYLSK+KL+ + K
Sbjct: 482 TFRSIYREHCEAFLDAVLNFEFATIESLWREFWRSQDNNNGDECEEEKYLSKTKLYQMCK 541
Query: 191 CVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
C+ VQ F+++VD+ FYQNLVEVL+PD
Sbjct: 542 CIEVQGFIKKVDYTFYQNLVEVLMPDVL 569
>gi|345493442|ref|XP_003427073.1| PREDICTED: transcription factor RFX3-like isoform 2 [Nasonia
vitripennis]
Length = 760
Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust.
Identities = 231/290 (79%), Positives = 264/290 (91%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
+AFLDA++ +F+TIESLWREFWRSQDNNNGDECEEEKYLSK+KL+ + KC+ VQ F+++
Sbjct: 446 EAFLDAVLNFEFATIESLWREFWRSQDNNNGDECEEEKYLSKTKLYQMCKCIEVQGFIKK 505
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
VD+ FYQNLVEVL+PDVLRPIP LT SIRNFAKG+ESWLT+AM CP+EM+ IK++AV
Sbjct: 506 VDYTFYQNLVEVLMPDVLRPIPSPLTQSIRNFAKGLESWLTSAMNDCPEEMMQIKLSAVS 565
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQ 395
AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLNRVDFHNVQEQASWVCQCD S+VQ
Sbjct: 566 AFAQTLRRYTSLNHLAQAARAVLQNNSQINQMLADLNRVDFHNVQEQASWVCQCDYSVVQ 625
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIR 455
+LE+DFK+TLQQQNSLE+WA WLK+VV VL+P+EGKP F KAARQFLLKWSFYSSMVIR
Sbjct: 626 RLEADFKVTLQQQNSLEQWAVWLKSVVTQVLQPYEGKPTFAKAARQFLLKWSFYSSMVIR 685
Query: 456 DLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESN 505
DLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA++TG TPIAV+G K N
Sbjct: 686 DLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAVSTGTTPIAVMGDKSQN 735
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 115/208 (55%), Positives = 147/208 (70%), Gaps = 24/208 (11%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNS-----NQ--------- 74
GNSKYHYYGIRVKP SPL L +E+G+ R + ++ ++N NQ
Sbjct: 322 GNSKYHYYGIRVKPSSPL---VLLNEDGTSRQQATSNIQANNNKRVKFVNQKQTETTYET 378
Query: 75 ---YGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSE-DCLPEDCTIEDVD 130
+ + + +N++P PQ H +LG+ S AIP+FPEI + LPEDCT+EDVD
Sbjct: 379 TNTQTNNNNNSNISSNASP-PQY--HQYLGEASCAIPEFPEIVVGHGSSLPEDCTLEDVD 435
Query: 131 TFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSK 190
TFRSIYREHCEAFLDA++ +F+TIESLWREFWRSQDNNNGDECEEEKYLSK+KL+ + K
Sbjct: 436 TFRSIYREHCEAFLDAVLNFEFATIESLWREFWRSQDNNNGDECEEEKYLSKTKLYQMCK 495
Query: 191 CVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
C+ VQ F+++VD+ FYQNLVEVL+PD
Sbjct: 496 CIEVQGFIKKVDYTFYQNLVEVLMPDVL 523
>gi|157132141|ref|XP_001662483.1| rfx transcription factor [Aedes aegypti]
gi|108881768|gb|EAT45993.1| AAEL002795-PA, partial [Aedes aegypti]
Length = 656
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 259/490 (52%), Positives = 316/490 (64%), Gaps = 95/490 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNI-----PLSDENGSPRGKKYKLVKTDSNSNQY-------- 75
GNSKYHYYGIR+KP S LNN P++ + + T
Sbjct: 224 GNSKYHYYGIRIKPGSSLNNAMDDQKPMNASHMNNNNSHSHNHNTMGGGGGGHGVGAGAM 283
Query: 76 ---GSEGHTTAGQTN-SNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDT 131
GS H + + + N P+S + +LGD S AIP FP I L+ LPED T+E
Sbjct: 284 GHGGSMNHRGSKKGSMKNEIPESCSQ-YLGDPSQAIPQFPVISLNHP-LPEDITLE---- 337
Query: 132 FRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKC 191
D T+ S++RE CE
Sbjct: 338 -------------------DVDTLRSIYRE-----------HCE---------------- 351
Query: 192 VPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQD-NNNGDECE 250
AFLDAI+ LDF+TIESLWREFWR+++ NNN DECE
Sbjct: 352 -------------------------AFLDAILNLDFNTIESLWREFWRAENINNNADECE 386
Query: 251 EEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKG 310
EEKYLSK+KL+ L++C P+Q F+++VDF+FYQN+V+VLIPDVLRPIP LT +IRNFAK
Sbjct: 387 EEKYLSKTKLYVLTQCEPIQDFIKQVDFMFYQNMVDVLIPDVLRPIPTGLTQAIRNFAKN 446
Query: 311 VESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTD 370
+ESWL++AM GCP+ ++ IK++AV AF Q LRRYTSLNHLAQAARAVLQNSTQI QML D
Sbjct: 447 LESWLSSAMSGCPESIVTIKLSAVAAFGQTLRRYTSLNHLAQAARAVLQNSTQIAQMLND 506
Query: 371 LNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFE 430
LNRVDF NVQEQASW+CQCD + VQ+LE+DFK LQQQN+LE+WA+WL+ VV+ L+ +
Sbjct: 507 LNRVDFRNVQEQASWICQCDTATVQRLENDFKAALQQQNTLEQWASWLQGVVDDALEEYR 566
Query: 431 GKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALA 490
GKP+F AARQFLLKWSFYSSMVIRDLTLRSA SFGSFHLIRLLYDEYMF++IEH+VA A
Sbjct: 567 GKPSFVNAARQFLLKWSFYSSMVIRDLTLRSAGSFGSFHLIRLLYDEYMFFIIEHKVAEA 626
Query: 491 TGETPIAVIG 500
T TPIAV+G
Sbjct: 627 TQTTPIAVMG 636
>gi|242004803|ref|XP_002423266.1| DNA-binding protein RFX2, putative [Pediculus humanus corporis]
gi|212506268|gb|EEB10528.1| DNA-binding protein RFX2, putative [Pediculus humanus corporis]
Length = 744
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/298 (77%), Positives = 257/298 (86%), Gaps = 14/298 (4%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
+AFL+A++ L+F TIESLWREFWRSQDNNNGDECEEEKYLSKSKL+ L K P+Q F+R
Sbjct: 431 EAFLEAVLNLEFQTIESLWREFWRSQDNNNGDECEEEKYLSKSKLYSLCKLQPIQEFMRS 490
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTA-V 334
VD++FYQN+V+VLIPDVLRPIP SLT SIRNFAKG+E+WLT AM GCPQEM+ IKV V
Sbjct: 491 VDYVFYQNIVQVLIPDVLRPIPSSLTQSIRNFAKGLENWLTGAMNGCPQEMVLIKVIIPV 550
Query: 335 GAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLV 394
A AQ LRRYTSLNHLAQAARAVLQNS+QI QML DLNRVDFHNVQEQASWVC+C+ S+V
Sbjct: 551 SALAQTLRRYTSLNHLAQAARAVLQNSSQITQMLADLNRVDFHNVQEQASWVCECEDSVV 610
Query: 395 QQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY----- 449
Q+LE+DFK TLQQQNSLE WA WLKNVV VLKPFEGKPNF KAARQFLLKWSFY
Sbjct: 611 QRLEADFKSTLQQQNSLESWALWLKNVVAQVLKPFEGKPNFAKAARQFLLKWSFYRQKNF 670
Query: 450 --------SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVI 499
+SMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VALATGETPIAV+
Sbjct: 671 FLINFSVNASMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHEVALATGETPIAVM 728
>gi|189241300|ref|XP_975182.2| PREDICTED: similar to GA19507-PA [Tribolium castaneum]
Length = 738
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 235/338 (69%), Positives = 274/338 (81%), Gaps = 17/338 (5%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
+AFLDAI++L+F+TIESLWREFWRSQ NNNGDECEEEKYLSKSKLFCL VQ F+++
Sbjct: 409 EAFLDAILSLEFTTIESLWREFWRSQYNNNGDECEEEKYLSKSKLFCLCSMEAVQQFMKQ 468
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
VD +FYQNL++VL+PDVL+PIP +LT SIRNFAK +E+WLT+AM G P M+ +K++AV
Sbjct: 469 VDLVFYQNLIQVLVPDVLKPIPATLTQSIRNFAKNLENWLTSAMAGAPPGMLTVKLSAVS 528
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQ 395
AF+ LRRYTSLNHLAQAARAVL NSTQI QMLTDLNRVDFH+V+EQASWVCQCD +V
Sbjct: 529 AFSSSLRRYTSLNHLAQAARAVLHNSTQIAQMLTDLNRVDFHSVREQASWVCQCDNEIVA 588
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIR 455
+ E+DFKLTLQQQNSLE+WA+WLKNVV + LKP+EGKP+F+KAARQFLLKWSFYSSMVIR
Sbjct: 589 RFENDFKLTLQQQNSLEQWASWLKNVVKSALKPYEGKPSFSKAARQFLLKWSFYSSMVIR 648
Query: 456 DLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVI--GSKESNPVESSQNP 513
DLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA ATG PIAVI G K Q+
Sbjct: 649 DLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAEATGVVPIAVILEGIK--------QDI 700
Query: 514 MDNGLYAHGQNNIL---VHEELHI----SHAPKRIKLS 544
M N L +G + + V +L H KR K+S
Sbjct: 701 MQNSLSIYGNDGVCNGGVSAKLSCVSPSDHLSKRAKIS 738
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 114/204 (55%), Positives = 143/204 (70%), Gaps = 17/204 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
GNSKYHYYGIRVKP S L N+ DE+G+ ++V SN++ ++G + NS
Sbjct: 300 GNSKYHYYGIRVKPGSSLMNM---DESGN------RVVLNTSNASG-KAQGTVRPFKRNS 349
Query: 89 NPSPQS------GNH-NFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
+ S S H +LGDGSNAIP FP+I + + LP++C EDVDT +SIYREH E
Sbjct: 350 DSSDASISVSVLSQHVTYLGDGSNAIPAFPDIHFTAESLPDECGYEDVDTLKSIYREHLE 409
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
AFLDAI++L+F+TIESLWREFWRSQ NNNGDECEEEKYLSKSKLFCL VQ F+++V
Sbjct: 410 AFLDAILSLEFTTIESLWREFWRSQYNNNGDECEEEKYLSKSKLFCLCSMEAVQQFMKQV 469
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTL 225
D +FYQNL++VL+PD TL
Sbjct: 470 DLVFYQNLIQVLVPDVLKPIPATL 493
>gi|270013165|gb|EFA09613.1| hypothetical protein TcasGA2_TC011734 [Tribolium castaneum]
Length = 782
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/313 (72%), Positives = 265/313 (84%), Gaps = 10/313 (3%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
+AFLDAI++L+F+TIESLWREFWRSQ NNNGDECEEEKYLSKSKLFCL VQ F+++
Sbjct: 453 EAFLDAILSLEFTTIESLWREFWRSQYNNNGDECEEEKYLSKSKLFCLCSMEAVQQFMKQ 512
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
VD +FYQNL++VL+PDVL+PIP +LT SIRNFAK +E+WLT+AM G P M+ +K++AV
Sbjct: 513 VDLVFYQNLIQVLVPDVLKPIPATLTQSIRNFAKNLENWLTSAMAGAPPGMLTVKLSAVS 572
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQ 395
AF+ LRRYTSLNHLAQAARAVL NSTQI QMLTDLNRVDFH+V+EQASWVCQCD +V
Sbjct: 573 AFSSSLRRYTSLNHLAQAARAVLHNSTQIAQMLTDLNRVDFHSVREQASWVCQCDNEIVA 632
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIR 455
+ E+DFKLTLQQQNSLE+WA+WLKNVV + LKP+EGKP+F+KAARQFLLKWSFYSSMVIR
Sbjct: 633 RFENDFKLTLQQQNSLEQWASWLKNVVKSALKPYEGKPSFSKAARQFLLKWSFYSSMVIR 692
Query: 456 DLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVI--GSKESNPVESSQNP 513
DLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA ATG PIAVI G K Q+
Sbjct: 693 DLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAEATGVVPIAVILEGIK--------QDI 744
Query: 514 MDNGLYAHGQNNI 526
M N L +G + +
Sbjct: 745 MQNSLSIYGNDGV 757
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 114/204 (55%), Positives = 143/204 (70%), Gaps = 17/204 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
GNSKYHYYGIRVKP S L N+ DE+G+ ++V SN++ ++G + NS
Sbjct: 344 GNSKYHYYGIRVKPGSSLMNM---DESGN------RVVLNTSNASG-KAQGTVRPFKRNS 393
Query: 89 NPSPQS------GNH-NFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
+ S S H +LGDGSNAIP FP+I + + LP++C EDVDT +SIYREH E
Sbjct: 394 DSSDASISVSVLSQHVTYLGDGSNAIPAFPDIHFTAESLPDECGYEDVDTLKSIYREHLE 453
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
AFLDAI++L+F+TIESLWREFWRSQ NNNGDECEEEKYLSKSKLFCL VQ F+++V
Sbjct: 454 AFLDAILSLEFTTIESLWREFWRSQYNNNGDECEEEKYLSKSKLFCLCSMEAVQQFMKQV 513
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTL 225
D +FYQNL++VL+PD TL
Sbjct: 514 DLVFYQNLIQVLVPDVLKPIPATL 537
>gi|312375061|gb|EFR22501.1| hypothetical protein AND_15118 [Anopheles darlingi]
Length = 837
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 240/422 (56%), Positives = 289/422 (68%), Gaps = 77/422 (18%)
Query: 99 FLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESL 158
+LGD S+AIP FP ID+ L +D T+E D T+ S+
Sbjct: 458 YLGDPSSAIPQFPIIDMIHP-LADDITLE-----------------------DVDTLRSI 493
Query: 159 WREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
+RE CE AF
Sbjct: 494 YRE-----------HCE-----------------------------------------AF 501
Query: 219 LDAIVTLDFSTIESLWREFWRSQDNNN-GDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LDAI+ LDF+ IESLWREFWR+++NNN GDECEEEKYLSK KL+ L++C PVQ FV+ VD
Sbjct: 502 LDAILNLDFNMIESLWREFWRAENNNNNGDECEEEKYLSKQKLYLLTQCEPVQEFVKDVD 561
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
F FYQN+VEVLIPDVLRPIP LT +IRNFAK +ESWLT+AM GCP+ ++ IK++AV AF
Sbjct: 562 FKFYQNMVEVLIPDVLRPIPTGLTQAIRNFAKNLESWLTSAMSGCPEPIMAIKLSAVSAF 621
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQL 397
Q LRRYTSLNHLAQAARAVLQN QI QML+DLNRVDF NVQEQASW+CQCD ++VQ+L
Sbjct: 622 GQTLRRYTSLNHLAQAARAVLQNGQQIAQMLSDLNRVDFRNVQEQASWICQCDTAIVQRL 681
Query: 398 ESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDL 457
E+DFK LQQQN+LEEWA WL+NVV+ L+ + GKP+F AARQFLLKWSFYSSMVIRDL
Sbjct: 682 ENDFKAALQQQNTLEEWAGWLQNVVDDALQDYRGKPSFVNAARQFLLKWSFYSSMVIRDL 741
Query: 458 TLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVESSQNPMDNG 517
TLRSA SFGSFHLIRLLYDEYMF++IEH+VA AT TPIAV+G ++ +P + + +D+
Sbjct: 742 TLRSAGSFGSFHLIRLLYDEYMFFIIEHKVAKATNTTPIAVMGQQKVSPARPAHDDLDSM 801
Query: 518 LY 519
LY
Sbjct: 802 LY 803
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/20 (85%), Positives = 18/20 (90%)
Query: 1 GNSKYHYYGIRVKPDSPLNN 20
GNSKYHYYGIR+KP SPL N
Sbjct: 287 GNSKYHYYGIRIKPTSPLVN 306
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/20 (85%), Positives = 18/20 (90%)
Query: 29 GNSKYHYYGIRVKPDSPLNN 48
GNSKYHYYGIR+KP SPL N
Sbjct: 287 GNSKYHYYGIRIKPTSPLVN 306
>gi|347970965|ref|XP_318401.5| AGAP003943-PA [Anopheles gambiae str. PEST]
gi|333469568|gb|EAA13634.5| AGAP003943-PA [Anopheles gambiae str. PEST]
Length = 730
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 240/423 (56%), Positives = 288/423 (68%), Gaps = 81/423 (19%)
Query: 99 FLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESL 158
+LGD + AIP FP ID+ LP+D T+E D T+ S+
Sbjct: 367 YLGDPNGAIPQFPIIDMIHP-LPDDITME-----------------------DVDTLRSI 402
Query: 159 WREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
+RE CE AF
Sbjct: 403 YRE-----------HCE-----------------------------------------AF 410
Query: 219 LDAIVTLDFSTIESLWREFWRSQDNNN-GDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LDAI+ LDF+ IESLWREFWR+++NNN GDECEEEKYLSK KL+ L++C PVQ FV+ VD
Sbjct: 411 LDAILNLDFNMIESLWREFWRAENNNNNGDECEEEKYLSKQKLYLLTQCEPVQEFVKHVD 470
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
FYQ++V+VLIPDVLRPIP LT +IRNFAK +E+WLT+AM GCP+ ++ IK++AV AF
Sbjct: 471 LQFYQSMVDVLIPDVLRPIPTGLTQAIRNFAKNLENWLTSAMGGCPEPIVAIKLSAVAAF 530
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQL 397
Q LRRYTSLNHLAQAARAVLQN TQI QML+DLNRVDF NVQEQASW+CQCD ++VQ+L
Sbjct: 531 GQTLRRYTSLNHLAQAARAVLQNGTQIAQMLSDLNRVDFRNVQEQASWICQCDTAVVQRL 590
Query: 398 ESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDL 457
E+DFK LQQQN+LE+WA WL+NVV+ L+ + GKP+F AARQFLLKWSFYSSMVIRDL
Sbjct: 591 ENDFKAALQQQNTLEQWAGWLQNVVDDALQEYRGKPSFVHAARQFLLKWSFYSSMVIRDL 650
Query: 458 TLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSK-ESNPVESSQNPMDN 516
TLRSA SFGSFHLIRLLYDEYMF++IEH+VA AT TPIAV+G K S PV Q+ +D
Sbjct: 651 TLRSAGSFGSFHLIRLLYDEYMFFIIEHKVAKATNTTPIAVMGEKINSRPV---QDDLDR 707
Query: 517 GLY 519
LY
Sbjct: 708 MLY 710
Score = 42.0 bits (97), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 17/18 (94%)
Query: 1 GNSKYHYYGIRVKPDSPL 18
GNSKYHYYGIR+KP SPL
Sbjct: 224 GNSKYHYYGIRIKPTSPL 241
Score = 42.0 bits (97), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 17/18 (94%)
Query: 29 GNSKYHYYGIRVKPDSPL 46
GNSKYHYYGIR+KP SPL
Sbjct: 224 GNSKYHYYGIRIKPTSPL 241
>gi|195388732|ref|XP_002053033.1| GJ23659 [Drosophila virilis]
gi|194151119|gb|EDW66553.1| GJ23659 [Drosophila virilis]
Length = 880
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 245/491 (49%), Positives = 307/491 (62%), Gaps = 100/491 (20%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDEN----GSPRGKKYKLVKTDSNSNQY----GSEGH 80
GNSKYHYYGIR+KP S L + + D++ G+P G + SN++Q GS G
Sbjct: 413 GNSKYHYYGIRIKPGSLLIHQSMEDKSLQGYGTPPGNGAIANVSSSNASQLASSNGSNGM 472
Query: 81 TTA-GQTNSNPSPQSGNHNF-----------LGDGSNAIPDFPEIDLSEDCLPEDCTIED 128
T++ GQ NS S HNF +GDG+ A+P FP I+LS
Sbjct: 473 TSSSGQRNSG----SKKHNFKPETYEACIQYIGDGAGAMPVFPPIELS------------ 516
Query: 129 VDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCL 188
+ H E LD D T +L+RE CE
Sbjct: 517 -------HSFHTELTLD-----DVDTFRALYRE-----------HCE------------- 540
Query: 189 SKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDE 248
+FLDA++ L+F T+E L R+FW + DNNN DE
Sbjct: 541 ----------------------------SFLDAVLNLEFGTVEFLLRDFWSTSDNNNLDE 572
Query: 249 CEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFA 308
CEEEKYLSK+KL+ L C VQ FVR VD+ FYQN V+V+IPDVLR IP +LT +IRNFA
Sbjct: 573 CEEEKYLSKTKLYLLCHCAEVQKFVREVDYQFYQNTVDVIIPDVLRSIPNALTQAIRNFA 632
Query: 309 KGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQML 368
K +E WL +M G P+++ IK +AV AF Q LRRYTSLNHLAQAARAVLQN QI+QML
Sbjct: 633 KNLELWLCESMLGVPEQLSQIKTSAVSAFCQTLRRYTSLNHLAQAARAVLQNGAQISQML 692
Query: 369 TDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKP 428
DLNRVDFHNVQEQA+WV QC ++VQ+LE+DFK LQQQ+SLE+WA+WL+ VV + ++
Sbjct: 693 NDLNRVDFHNVQEQAAWVSQCAPAVVQRLENDFKAALQQQSSLEQWASWLQLVVESAMEE 752
Query: 429 FEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA 488
+ GKP++ +AARQFLLKWSFYSSM+IRDLTLRSA+SFGSFHLIRLL+DEYMFYL+EH++A
Sbjct: 753 YTGKPSYARAARQFLLKWSFYSSMIIRDLTLRSASSFGSFHLIRLLFDEYMFYLVEHKIA 812
Query: 489 LATGETPIAVI 499
A +T IAVI
Sbjct: 813 EAQQKTAIAVI 823
>gi|195107915|ref|XP_001998539.1| GI24030 [Drosophila mojavensis]
gi|193915133|gb|EDW14000.1| GI24030 [Drosophila mojavensis]
Length = 829
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 241/491 (49%), Positives = 302/491 (61%), Gaps = 96/491 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDEN--------GSPRGKKYKLVKTDSNSNQYGSE-- 78
GNSKYHYYGIR+KP S L + + D++ G+ G + SN+NQ GS
Sbjct: 353 GNSKYHYYGIRIKPGSLLIHQSMEDKSMQGYGASPGNGNGNGAIANVSSSNANQLGSSNG 412
Query: 79 --------GHTTAGQTNSNPSPQSGNH--NFLGDGSNAIPDFPEIDLSEDCLPEDCTIED 128
G T G N P++ ++GDG+ A+P FP I+LS
Sbjct: 413 SNGMSTSSGQRTTGAKKHNFKPETYEACIQYIGDGAGAMPVFPPIELS------------ 460
Query: 129 VDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCL 188
+ H E LD D T +L+RE CE
Sbjct: 461 -------HSFHSELTLD-----DVDTFRALYRE-----------HCE------------- 484
Query: 189 SKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDE 248
+FLDA++ L+F T+E L R+FWR+ DNNN DE
Sbjct: 485 ----------------------------SFLDAVLNLEFGTVEFLLRDFWRTSDNNNLDE 516
Query: 249 CEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFA 308
CEEEKYLSK+KL+ L C VQ FVR VD+ FYQN V+V+IPDVLR IP +LT +IRNFA
Sbjct: 517 CEEEKYLSKTKLYLLCHCAEVQKFVREVDYQFYQNTVDVIIPDVLRSIPNALTQAIRNFA 576
Query: 309 KGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQML 368
K +E WL +M G P+++ IK +AV AF Q LRRYTSLNHLAQAARAVLQN QI+QML
Sbjct: 577 KNLELWLCESMMGVPEQLSQIKTSAVSAFCQTLRRYTSLNHLAQAARAVLQNGAQISQML 636
Query: 369 TDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKP 428
DLNRVDFHNVQEQA+WV QC ++VQ+LE DFK LQQQ+SLE+WA+WL+ VV + ++
Sbjct: 637 NDLNRVDFHNVQEQAAWVSQCAPAVVQRLEHDFKAALQQQSSLEQWASWLQLVVESAMEE 696
Query: 429 FEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA 488
+ GKP++ +AARQFLLKWSFYSSM+IRDLTLRSA+SFGSFHLIRLL+DEYMFYL+EH++A
Sbjct: 697 YTGKPSYARAARQFLLKWSFYSSMIIRDLTLRSASSFGSFHLIRLLFDEYMFYLVEHKIA 756
Query: 489 LATGETPIAVI 499
A +T IAVI
Sbjct: 757 EAQQKTAIAVI 767
>gi|111305724|gb|AAI21501.1| rfx3 protein [Xenopus (Silurana) tropicalis]
Length = 783
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 297/488 (60%), Gaps = 94/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D + + G +
Sbjct: 279 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVGDGFAGSGQS 338
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
A QS +H D S A+P+F E+++S LP+ T E
Sbjct: 339 GAS-VEQTVIAQSQHHQQFLDASRALPEFAEVEIS--SLPDGTTFE-------------- 381
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 382 ---------DIKSLQSLYRE-----------HCE-------------------------- 395
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWR---------SQDNNNGDECEEE 252
A LD +V L FS IE LW+ FWR S +G+ E E
Sbjct: 396 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSSPADGSTITESGNLSEIE 440
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L KSKL K + ++ D + YQ+LVE+LIPDVLRPIP +LT ++RNFAK +E
Sbjct: 441 SRLPKSKLILFCKNESIVKWMCNCDHMMYQSLVEILIPDVLRPIPSALTQAVRNFAKSLE 500
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL++AM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 501 GWLSSAMSNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 560
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD S+VQ+LE+DFK+TLQQQ++LE+WA WL NVV LKP+EG+
Sbjct: 561 RVDFANVQEQASWVCQCDDSMVQRLETDFKMTLQQQSTLEQWAAWLDNVVTQALKPYEGR 620
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 621 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 680
Query: 493 ETPIAVIG 500
E+PIAV+G
Sbjct: 681 ESPIAVMG 688
>gi|410977986|ref|XP_003995379.1| PREDICTED: transcription factor RFX3 isoform 1 [Felis catus]
gi|410977988|ref|XP_003995380.1| PREDICTED: transcription factor RFX3 isoform 2 [Felis catus]
Length = 749
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 246/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 527
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD S+VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDSMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 647
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 648 ETPIAVMG 655
>gi|452881617|ref|NP_001263620.1| transcription factor RFX3 [Xenopus (Silurana) tropicalis]
gi|292630951|sp|Q0V9K5.2|RFX3_XENTR RecName: Full=Transcription factor RFX3; AltName: Full=Regulatory
factor X 3
Length = 749
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 297/488 (60%), Gaps = 94/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D + + G +
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVGDGFAGSGQS 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
A QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 GAS-VEQTVIAQSQHHQQFLDASRALPEFAEVEIS--SLPDGTTFE-------------- 347
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 348 ---------DIKSLQSLYRE-----------HCE-------------------------- 361
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWR---------SQDNNNGDECEEE 252
A LD +V L FS IE LW+ FWR S +G+ E E
Sbjct: 362 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSSPADGSTITESGNLSEIE 406
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L KSKL K + ++ D + YQ+LVE+LIPDVLRPIP +LT ++RNFAK +E
Sbjct: 407 SRLPKSKLILFCKNESIVKWMCNCDHMMYQSLVEILIPDVLRPIPSALTQAVRNFAKSLE 466
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL++AM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 467 GWLSSAMSNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 526
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD S+VQ+LE+DFK+TLQQQ++LE+WA WL NVV LKP+EG+
Sbjct: 527 RVDFANVQEQASWVCQCDDSMVQRLETDFKMTLQQQSTLEQWAAWLDNVVTQALKPYEGR 586
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 587 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 646
Query: 493 ETPIAVIG 500
E+PIAV+G
Sbjct: 647 ESPIAVMG 654
>gi|351713625|gb|EHB16544.1| Transcription factor RFX3 [Heterocephalus glaber]
Length = 749
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 246/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTAITESSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 527
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD S+VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDSMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 647
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 648 ETPIAVMG 655
>gi|158260103|dbj|BAF82229.1| unnamed protein product [Homo sapiens]
Length = 749
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 295/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLN 527
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 647
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 648 ETPIAVMG 655
>gi|19743884|ref|NP_602304.1| transcription factor RFX3 isoform b [Homo sapiens]
gi|32172437|sp|P48380.2|RFX3_HUMAN RecName: Full=Transcription factor RFX3; AltName: Full=Regulatory
factor X 3
gi|18380934|gb|AAH22191.1| Regulatory factor X, 3 (influences HLA class II expression) [Homo
sapiens]
gi|119579200|gb|EAW58796.1| regulatory factor X, 3 (influences HLA class II expression),
isoform CRA_c [Homo sapiens]
gi|119579202|gb|EAW58798.1| regulatory factor X, 3 (influences HLA class II expression),
isoform CRA_c [Homo sapiens]
gi|261858730|dbj|BAI45887.1| regulatory factor X, 3 [synthetic construct]
Length = 749
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 295/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLN 527
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 647
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 648 ETPIAVMG 655
>gi|444722390|gb|ELW63087.1| Transcription factor RFX3 [Tupaia chinensis]
Length = 749
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPADGTTITESSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 527
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 647
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 648 ETPIAVMG 655
>gi|395819141|ref|XP_003782958.1| PREDICTED: transcription factor RFX3 [Otolemur garnettii]
Length = 749
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPADGTTITESSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 527
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 647
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 648 ETPIAVMG 655
>gi|354497045|ref|XP_003510633.1| PREDICTED: transcription factor RFX3-like [Cricetulus griseus]
Length = 749
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 295/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLN 527
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 647
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 648 ETPIAVMG 655
>gi|395515976|ref|XP_003762173.1| PREDICTED: transcription factor RFX3 [Sarcophilus harrisii]
Length = 759
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 255 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 314
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 315 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 358
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 359 ---------DIKSLQSLYRE-----------HCE-------------------------- 372
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 373 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPADGTTITESSNLSEIE 417
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 418 SRLPKAKLITLCKNESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 477
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 478 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 537
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 538 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 597
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 598 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 657
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 658 ETPIAVMG 665
>gi|297477836|ref|XP_002689661.1| PREDICTED: transcription factor RFX3 [Bos taurus]
gi|296484788|tpg|DAA26903.1| TPA: regulatory factor X, 3 (influences HLA class II expression)
[Bos taurus]
gi|440905255|gb|ELR55659.1| Transcription factor RFX3 [Bos grunniens mutus]
Length = 749
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPADGTTITESSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 527
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 647
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 648 ETPIAVMG 655
>gi|126335607|ref|XP_001364935.1| PREDICTED: transcription factor RFX3 [Monodelphis domestica]
Length = 749
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPADGTTITESSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKNESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 527
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 647
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 648 ETPIAVMG 655
>gi|4506495|ref|NP_002910.1| transcription factor RFX3 isoform a [Homo sapiens]
gi|452404|emb|CAA53706.1| DNA binding protein RFX3 [Homo sapiens]
gi|119579199|gb|EAW58795.1| regulatory factor X, 3 (influences HLA class II expression),
isoform CRA_b [Homo sapiens]
gi|119579203|gb|EAW58799.1| regulatory factor X, 3 (influences HLA class II expression),
isoform CRA_b [Homo sapiens]
Length = 707
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 295/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLN 527
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 647
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 648 ETPIAVMG 655
>gi|301767436|ref|XP_002919144.1| PREDICTED: transcription factor RFX3-like [Ailuropoda melanoleuca]
Length = 749
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 527
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 647
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 648 ETPIAVMG 655
>gi|296189854|ref|XP_002806534.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor RFX3
[Callithrix jacchus]
gi|332249547|ref|XP_003273919.1| PREDICTED: transcription factor RFX3 isoform 1 [Nomascus
leucogenys]
gi|332249549|ref|XP_003273920.1| PREDICTED: transcription factor RFX3 isoform 2 [Nomascus
leucogenys]
gi|397505732|ref|XP_003823404.1| PREDICTED: transcription factor RFX3 isoform 1 [Pan paniscus]
gi|397505734|ref|XP_003823405.1| PREDICTED: transcription factor RFX3 isoform 2 [Pan paniscus]
gi|403289106|ref|XP_003935709.1| PREDICTED: transcription factor RFX3 isoform 1 [Saimiri boliviensis
boliviensis]
gi|403289108|ref|XP_003935710.1| PREDICTED: transcription factor RFX3 isoform 2 [Saimiri boliviensis
boliviensis]
gi|426361189|ref|XP_004047804.1| PREDICTED: transcription factor RFX3 [Gorilla gorilla gorilla]
gi|355567796|gb|EHH24137.1| Regulatory factor X 3 [Macaca mulatta]
gi|355753379|gb|EHH57425.1| Regulatory factor X 3 [Macaca fascicularis]
Length = 749
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 527
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 647
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 648 ETPIAVMG 655
>gi|426220384|ref|XP_004004396.1| PREDICTED: transcription factor RFX3 isoform 1 [Ovis aries]
gi|426220386|ref|XP_004004397.1| PREDICTED: transcription factor RFX3 isoform 2 [Ovis aries]
Length = 749
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPADGTTITESSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 527
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 647
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 648 ETPIAVMG 655
>gi|149736841|ref|XP_001491823.1| PREDICTED: transcription factor RFX3 isoform 1 [Equus caballus]
gi|338719694|ref|XP_003364046.1| PREDICTED: transcription factor RFX3 isoform 2 [Equus caballus]
Length = 749
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 527
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 647
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 648 ETPIAVMG 655
>gi|75075377|sp|Q4R3I8.1|RFX3_MACFA RecName: Full=Transcription factor RFX3; AltName: Full=Regulatory
factor X 3
gi|67971974|dbj|BAE02329.1| unnamed protein product [Macaca fascicularis]
Length = 749
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 527
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 647
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 648 ETPIAVMG 655
>gi|291383308|ref|XP_002708228.1| PREDICTED: regulatory factor X, 3 (influences HLA class II
expression) [Oryctolagus cuniculus]
Length = 749
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 293/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR D E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPTTPADGTTITEPSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 527
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 647
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 648 ETPIAVMG 655
>gi|395740509|ref|XP_002819878.2| PREDICTED: transcription factor RFX3 isoform 2 [Pongo abelii]
Length = 717
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 255 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 314
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 315 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 358
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 359 ---------DIKSLQSLYRE-----------HCE-------------------------- 372
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 373 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIE 417
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 418 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 477
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 478 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 537
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 538 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 597
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 598 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 657
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 658 ETPIAVMG 665
>gi|34328189|ref|NP_035395.2| transcription factor RFX3 [Mus musculus]
gi|261878533|ref|NP_001159886.1| transcription factor RFX3 [Mus musculus]
gi|32172438|sp|P48381.2|RFX3_MOUSE RecName: Full=Transcription factor RFX3; AltName: Full=Regulatory
factor X 3
gi|17160843|gb|AAH17598.1| Regulatory factor X, 3 (influences HLA class II expression) [Mus
musculus]
gi|148709706|gb|EDL41652.1| regulatory factor X, 3 (influences HLA class II expression) [Mus
musculus]
Length = 749
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 244/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPADGTTITESSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLN 527
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA TG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQVTG 647
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 648 ETPIAVMG 655
>gi|327263459|ref|XP_003216537.1| PREDICTED: transcription factor RFX3-like [Anolis carolinensis]
Length = 749
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 246/488 (50%), Positives = 297/488 (60%), Gaps = 94/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + S G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTS-GQQ 303
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 304 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 347
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 348 ---------DIKSLQSLYRE-----------HCE-------------------------- 361
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 362 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSPTTDGTTITESSNLSEIE 406
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 407 SRLPKAKLITLCKNESILKWMCNCDHVMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 466
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLN
Sbjct: 467 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLN 526
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 527 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 586
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 587 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 646
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 647 ETPIAVMG 654
>gi|73946688|ref|XP_533540.2| PREDICTED: transcription factor RFX3 isoform 1 [Canis lupus
familiaris]
Length = 749
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 527
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 647
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 648 ETPIAVMG 655
>gi|297271002|ref|XP_001086729.2| PREDICTED: transcription factor RFX3 isoform 6 [Macaca mulatta]
Length = 782
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 278 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 337
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 338 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 381
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 382 ---------DIKSLQSLYRE-----------HCE-------------------------- 395
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 396 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIE 440
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 441 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 500
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 501 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 560
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 561 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 620
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 621 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 680
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 681 ETPIAVMG 688
>gi|431898650|gb|ELK07030.1| Transcription factor RFX3 [Pteropus alecto]
Length = 756
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 252 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 311
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 312 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 355
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 356 ---------DIKSLQSLYRE-----------HCE-------------------------- 369
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 370 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPADGTTITESSNLSEIE 414
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 415 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 474
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 475 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 534
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 535 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 594
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 595 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 654
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 655 ETPIAVMG 662
>gi|363744398|ref|XP_003643038.1| PREDICTED: transcription factor RFX3-like [Gallus gallus]
Length = 749
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 244/488 (50%), Positives = 295/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S +P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRVLPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWR---------SQDNNNGDECEEE 252
A LD +V L FS IE LW+ FWR + N + E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPPDGTTVNEPSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKNESILKWMCNCDHVMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 527
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 647
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 648 ETPIAVMG 655
>gi|344297681|ref|XP_003420525.1| PREDICTED: transcription factor RFX3-like [Loxodonta africana]
Length = 749
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 244/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKP+SPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPESPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPADGTTMTESSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 527
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 647
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 648 ETPIAVMG 655
>gi|67968387|dbj|BAE00555.1| unnamed protein product [Macaca fascicularis]
Length = 703
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 199 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 258
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 259 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 302
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 303 ---------DIKSLQSLYRE-----------HCE-------------------------- 316
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 317 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIE 361
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 362 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 421
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 422 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 481
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 482 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 541
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 542 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 601
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 602 ETPIAVMG 609
>gi|119900355|ref|XP_618263.3| PREDICTED: transcription factor RFX3, partial [Bos taurus]
Length = 677
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 173 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 232
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 233 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 276
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 277 ---------DIKSLQSLYRE-----------HCE-------------------------- 290
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 291 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPADGTTITESSNLSEIE 335
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 336 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 395
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 396 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 455
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 456 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 515
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 516 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 575
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 576 ETPIAVMG 583
>gi|224091292|ref|XP_002195859.1| PREDICTED: transcription factor RFX3 isoform 1 [Taeniopygia
guttata]
Length = 749
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 244/488 (50%), Positives = 295/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVTDGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S +P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRVLPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWR---------SQDNNNGDECEEE 252
A LD +V L FS IE LW+ FWR + N + E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSAPPDGTPVNEPSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKNESILKWMCNCDHVMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 527
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 647
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 648 ETPIAVMG 655
>gi|380800407|gb|AFE72079.1| transcription factor RFX3 isoform b, partial [Macaca mulatta]
Length = 717
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 213 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 272
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 273 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 316
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 317 ---------DIKSLQSLYRE-----------HCE-------------------------- 330
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 331 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIE 375
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 376 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 435
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 436 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 495
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 496 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 555
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 556 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 615
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 616 ETPIAVMG 623
>gi|149062647|gb|EDM13070.1| rCG47137 [Rattus norvegicus]
Length = 749
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 244/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLN 527
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA TG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQVTG 647
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 648 ETPIAVMG 655
>gi|281349305|gb|EFB24889.1| hypothetical protein PANDA_007728 [Ailuropoda melanoleuca]
Length = 677
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 173 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 232
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 233 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 276
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 277 ---------DIKSLQSLYRE-----------HCE-------------------------- 290
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 291 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIE 335
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 336 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 395
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 396 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 455
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 456 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 515
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 516 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 575
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 576 ETPIAVMG 583
>gi|449514466|ref|XP_004177216.1| PREDICTED: transcription factor RFX3 isoform 4 [Taeniopygia
guttata]
Length = 724
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 244/488 (50%), Positives = 295/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 220 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVTDGFTGSGQQ 279
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S +P+F E+++S LP+ T E
Sbjct: 280 TGTSVEQTVIAQSQHHQQFLDASRVLPEFGEVEIS--SLPDGTTFE-------------- 323
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 324 ---------DIKSLQSLYRE-----------HCE-------------------------- 337
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWR---------SQDNNNGDECEEE 252
A LD +V L FS IE LW+ FWR + N + E E
Sbjct: 338 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSAPPDGTPVNEPSNLSEIE 382
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 383 SRLPKAKLITLCKNESILKWMCNCDHVMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 442
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 443 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 502
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 503 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 562
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 563 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 622
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 623 ETPIAVMG 630
>gi|350579269|ref|XP_003480572.1| PREDICTED: transcription factor RFX3-like [Sus scrofa]
Length = 589
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 85 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 144
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 145 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 188
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 189 ---------DIKSLQSLYRE-----------HCE-------------------------- 202
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 203 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIE 247
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 248 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 307
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 308 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 367
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 368 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 427
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 428 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 487
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 488 ETPIAVMG 495
>gi|343958852|dbj|BAK63281.1| transcription factor RFX3 [Pan troglodytes]
Length = 749
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 244/488 (50%), Positives = 293/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPADGTTITESSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 527
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVC CD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCLCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 647
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 648 ETPIAVMG 655
>gi|74205536|dbj|BAE21069.1| unnamed protein product [Mus musculus]
Length = 614
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 244/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 87 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 146
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 147 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 190
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 191 ---------DIKSLQSLYRE-----------HCE-------------------------- 204
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 205 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPADGTTITESSNLSEIE 249
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 250 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 309
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLN
Sbjct: 310 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLN 369
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 370 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 429
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA TG
Sbjct: 430 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQVTG 489
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 490 ETPIAVMG 497
>gi|345308196|ref|XP_001506894.2| PREDICTED: transcription factor RFX3-like [Ornithorhynchus
anatinus]
Length = 929
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 244/487 (50%), Positives = 294/487 (60%), Gaps = 92/487 (18%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ +
Sbjct: 426 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSAQQ 485
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 486 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 529
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 530 ---------DIKSLQSLYRE-----------HCE-------------------------- 543
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC--------EEEK 253
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 544 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSPPADGTITESSNLSEIES 588
Query: 254 YLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVES 313
L K+KL L K + ++ D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 589 RLPKAKLITLCKNESILKWMCNCDHVMYQALVEILIPDVLRPIPSALTQAIRNFAKSLEG 648
Query: 314 WLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNR 373
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLNR
Sbjct: 649 WLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLNR 708
Query: 374 VDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKP 433
VDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+P
Sbjct: 709 VDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGRP 768
Query: 434 NFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGE 493
+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGE
Sbjct: 769 SFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGE 828
Query: 494 TPIAVIG 500
TPIAV+G
Sbjct: 829 TPIAVMG 835
>gi|390357206|ref|XP_790942.3| PREDICTED: transcription factor RFX3 [Strongylocentrotus
purpuratus]
Length = 720
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 249/493 (50%), Positives = 293/493 (59%), Gaps = 102/493 (20%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENG-----------------SPRGKKYKLVKTDSN 71
GNSKYHYYGIR+K S LN D++G SP G K + ++
Sbjct: 264 GNSKYHYYGIRIKSTSSLNQ--FQDDSGHTAMRQQPINSAKRFKPSPMGGKPEDGSPNAG 321
Query: 72 SNQYGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDT 131
S H PS + FLGD + +P+F E + D E +D+
Sbjct: 322 GAGGNSGDHV--------PSQTQQHQQFLGDSTQVLPEF-----KELIVETDLLPEGLDS 368
Query: 132 FRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKC 191
E E F +SL+RE CE
Sbjct: 369 ------EDVEVF------------QSLYRE-----------HCE---------------- 383
Query: 192 VPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEE 251
+ LD +V L F IE LW+ FWR + + E+
Sbjct: 384 -------------------------SILDVVVNLQFPLIEQLWQTFWRCPPPDVPLDEEQ 418
Query: 252 EKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGV 311
EK L K KLF L K VP+Q +++ D + YQ LVEVLIPDVLRPIP +LT +IRNFAK +
Sbjct: 419 EKQLDKDKLFALCKLVPIQTYIKHYDHILYQGLVEVLIPDVLRPIPSALTQAIRNFAKSL 478
Query: 312 ESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDL 371
ESWL N+M CP EM+++KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DL
Sbjct: 479 ESWLRNSMSNCPAEMLSLKVGAVTAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDL 538
Query: 372 NRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEG 431
NRVDF NVQEQASWVCQCD ++VQQLE DFK TLQQQNSLE+WA WLK VV +L+P EG
Sbjct: 539 NRVDFANVQEQASWVCQCDDAVVQQLEQDFKRTLQQQNSLEQWAAWLKGVVTQILEPHEG 598
Query: 432 KPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALAT 491
P F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEH+VA AT
Sbjct: 599 SPYFAKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHKVASAT 658
Query: 492 GETPIAVIGSKES 504
GETPIAV+ +S
Sbjct: 659 GETPIAVMDKVDS 671
>gi|26325973|dbj|BAC26730.1| unnamed protein product [Mus musculus]
Length = 749
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 241/488 (49%), Positives = 292/488 (59%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 363 ---------------AILDVVVNLKFSLIEKLWQTFWRYSPSTPADGTTITESSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT ++RNFAK +E
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAVRNFAKSLE 467
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFA LRRYTSLNHLAQAARAVLQN++QINQML+DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAHTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLN 527
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+L +DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDNMVQRLXTDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA TG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQVTG 647
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 648 ETPIAVMG 655
>gi|410929475|ref|XP_003978125.1| PREDICTED: DNA-binding protein RFX2-like [Takifugu rubripes]
Length = 736
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 250/492 (50%), Positives = 296/492 (60%), Gaps = 100/492 (20%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYK-LVKTDSNSNQY-GSEGH 80
GNSKYHYYGIRVKPDSPLN + + + R + ++K L K D S+ GS H
Sbjct: 271 GNSKYHYYGIRVKPDSPLNRLQEDTQYMAMRQQPVHQKPRFKPLQKVDGMSDSLCGSSQH 330
Query: 81 TTAGQTNSNP----SPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIY 136
NS P + QS +H D S+ +P FP DLS LP
Sbjct: 331 C-----NSTPEQSVAAQSQHHQQYIDTSHTLPPFPSPDLSAPSLP--------------- 370
Query: 137 REHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQA 196
+ I D +++L+R D CE
Sbjct: 371 --------ERITVSDIKKLQNLYR-----------DHCE--------------------- 390
Query: 197 FVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDN--------NNGDE 248
A LD ++ L F IE LW+ FW S NN D+
Sbjct: 391 --------------------ATLDVVMNLQFHYIEKLWQTFWYSTAPSSDGNTAINNSDD 430
Query: 249 CEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFA 308
E E + + KL L K PV+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFA
Sbjct: 431 DEVEGAIPREKLVALCKYEPVRLWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFA 490
Query: 309 KGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQML 368
K +E WLTNAM PQE+I KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML
Sbjct: 491 KSLEGWLTNAMSNFPQEIIRTKVAVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQML 550
Query: 369 TDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKP 428
+DLNRVDF NVQEQASWVCQCD S+VQ+LE DFK+TLQQQ+SL++WA WL NVV VLKP
Sbjct: 551 SDLNRVDFANVQEQASWVCQCDESVVQRLEQDFKVTLQQQSSLDQWATWLDNVVTQVLKP 610
Query: 429 FEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA 488
+G +F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA
Sbjct: 611 HQGSRSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVA 670
Query: 489 LATGETPIAVIG 500
ATGETPIAV+G
Sbjct: 671 QATGETPIAVMG 682
>gi|195037194|ref|XP_001990049.1| GH18452 [Drosophila grimshawi]
gi|193894245|gb|EDV93111.1| GH18452 [Drosophila grimshawi]
Length = 918
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 238/492 (48%), Positives = 301/492 (61%), Gaps = 100/492 (20%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDEN----GSPRGKKYKLVKTDSNSNQYGS------- 77
GNSKYHYYGIR+KP S L + + D+ G+P G + +S+ G+
Sbjct: 434 GNSKYHYYGIRIKPGSLLIHQSMEDKTMQGYGTPTGNG---AMANVSSSSIGATQLGSSN 490
Query: 78 --------EGHTTAGQTNSNPSPQSGNH--NFLGDGSNAIPDFPEIDLSEDCLPEDCTIE 127
G +AG N P++ ++GDG+ A+P FP I+LS
Sbjct: 491 GSNGLSSNSGQRSAGAKKHNFKPETYEACIQYIGDGAGAMPVFPAIELS----------- 539
Query: 128 DVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFC 187
+ H E LD D T +L+RE CE
Sbjct: 540 --------HSFHSELTLD-----DVDTFRALYRE-----------HCE------------ 563
Query: 188 LSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGD 247
+FLDA++ L+F T+E L R+FWR+ DNNN D
Sbjct: 564 -----------------------------SFLDAVLNLEFGTVEFLLRDFWRTTDNNNLD 594
Query: 248 ECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNF 307
ECEEEKYLSK+KL+ L C VQ FVR VD+ FYQN V+V+IPDVLR IP +LT +IRNF
Sbjct: 595 ECEEEKYLSKTKLYLLCHCAEVQKFVREVDYQFYQNTVDVIIPDVLRSIPNALTQAIRNF 654
Query: 308 AKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQM 367
AK +E WL +M G P+++ IK +AV AF Q LRRYTSLNHLAQAARAVLQN QI+QM
Sbjct: 655 AKNLELWLCESMLGVPEQLSQIKTSAVSAFCQTLRRYTSLNHLAQAARAVLQNGAQISQM 714
Query: 368 LTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLK 427
L DLNRVDFHNVQEQA+WV QC +VQ+LE+DFK LQQQ+SLE+WA+WL+ VV + ++
Sbjct: 715 LNDLNRVDFHNVQEQAAWVSQCAPDVVQRLENDFKAALQQQSSLEQWASWLQLVVESAME 774
Query: 428 PFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQV 487
+ GKP++ +AARQFLLKWSFYSSM+IRDLTLRSA+SFGSFHLIRLL+DEYMFYL+EH++
Sbjct: 775 EYTGKPSYARAARQFLLKWSFYSSMIIRDLTLRSASSFGSFHLIRLLFDEYMFYLVEHKI 834
Query: 488 ALATGETPIAVI 499
A A +T IAVI
Sbjct: 835 AEAQQKTAIAVI 846
>gi|198450965|ref|XP_001358196.2| GA19507, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|198131273|gb|EAL27333.2| GA19507, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 1241
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 241/489 (49%), Positives = 298/489 (60%), Gaps = 94/489 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDEN-----GSPRGKKYKLVKTDSNSN--QYGSEGHT 81
GNSKYHYYGIR+KP S LN+ + D G G LV S+++ GS G
Sbjct: 782 GNSKYHYYGIRIKPGSLLNHHSMEDSKSMHGYGPSSGANGALVSVSSSTSGQMAGSNGSV 841
Query: 82 ----TAGQTNSN-------PSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVD 130
+AGQ N P ++GDGS+A LP
Sbjct: 842 GMAGSAGQRNGTSKKHSFKPETYEACIQYIGDGSSA-------------LP--------- 879
Query: 131 TFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSK 190
+F I H +F + D T +L+RE CE
Sbjct: 880 SFPPIELSH--SFSSELTLEDVDTFRALYRE-----------HCE--------------- 911
Query: 191 CVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECE 250
+FLDA++ L+F T+E L R+FWRS DNNN DECE
Sbjct: 912 --------------------------SFLDAVLNLEFGTVEFLLRDFWRSSDNNNLDECE 945
Query: 251 EEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKG 310
EEKYLSK+KL+ L C VQ FVR VD+ FYQN V+V+IPDVLR IP +LT +IRNFAK
Sbjct: 946 EEKYLSKTKLYLLCHCAEVQKFVREVDYQFYQNTVDVIIPDVLRSIPNALTQAIRNFAKN 1005
Query: 311 VESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTD 370
+E WL +M G P+++ IK +AV AF Q LRRYTSLNHLAQAARAVLQN QI+QML+D
Sbjct: 1006 LELWLCESMMGVPEQLAQIKTSAVSAFCQTLRRYTSLNHLAQAARAVLQNGAQISQMLSD 1065
Query: 371 LNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFE 430
LNRVDFHNVQEQA+WV QC ++VQ+LESDFK LQQQ+SLE+WA+WL+ VV + ++ +
Sbjct: 1066 LNRVDFHNVQEQAAWVSQCAPAVVQRLESDFKAALQQQSSLEQWASWLQLVVESAMEEYT 1125
Query: 431 GKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALA 490
GKP + +AARQFLLKWSFYSSM+IRDLTLRSA+SFGSFHLIRLL+DEYMFYL+EH++A A
Sbjct: 1126 GKPTYARAARQFLLKWSFYSSMIIRDLTLRSASSFGSFHLIRLLFDEYMFYLVEHKIAEA 1185
Query: 491 TGETPIAVI 499
+T IAVI
Sbjct: 1186 QQKTAIAVI 1194
>gi|390177424|ref|XP_003736372.1| GA19507, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388859038|gb|EIM52445.1| GA19507, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 884
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 240/482 (49%), Positives = 297/482 (61%), Gaps = 80/482 (16%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDEN-----GSPRGKKYKLVKTDSNSN--QYGSEGHT 81
GNSKYHYYGIR+KP S LN+ + D G G LV S+++ GS G
Sbjct: 425 GNSKYHYYGIRIKPGSLLNHHSMEDSKSMHGYGPSSGANGALVSVSSSTSGQMAGSNGSV 484
Query: 82 ----TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYR 137
+AGQ N S H+F + A + I LP +F I
Sbjct: 485 GMAGSAGQRNGT----SKKHSFKPETYEACIQY--IGDGSSALP---------SFPPIEL 529
Query: 138 EHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAF 197
H +F + D T +L+RE CE
Sbjct: 530 SH--SFSSELTLEDVDTFRALYRE-----------HCE---------------------- 554
Query: 198 VRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSK 257
+FLDA++ L+F T+E L R+FWRS DNNN DECEEEKYLSK
Sbjct: 555 -------------------SFLDAVLNLEFGTVEFLLRDFWRSSDNNNLDECEEEKYLSK 595
Query: 258 SKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTN 317
+KL+ L C VQ FVR VD+ FYQN V+V+IPDVLR IP +LT +IRNFAK +E WL
Sbjct: 596 TKLYLLCHCAEVQKFVREVDYQFYQNTVDVIIPDVLRSIPNALTQAIRNFAKNLELWLCE 655
Query: 318 AMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFH 377
+M G P+++ IK +AV AF Q LRRYTSLNHLAQAARAVLQN QI+QML+DLNRVDFH
Sbjct: 656 SMMGVPEQLAQIKTSAVSAFCQTLRRYTSLNHLAQAARAVLQNGAQISQMLSDLNRVDFH 715
Query: 378 NVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTK 437
NVQEQA+WV QC ++VQ+LESDFK LQQQ+SLE+WA+WL+ VV + ++ + GKP + +
Sbjct: 716 NVQEQAAWVSQCAPAVVQRLESDFKAALQQQSSLEQWASWLQLVVESAMEEYTGKPTYAR 775
Query: 438 AARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIA 497
AARQFLLKWSFYSSM+IRDLTLRSA+SFGSFHLIRLL+DEYMFYL+EH++A A +T IA
Sbjct: 776 AARQFLLKWSFYSSMIIRDLTLRSASSFGSFHLIRLLFDEYMFYLVEHKIAEAQQKTAIA 835
Query: 498 VI 499
VI
Sbjct: 836 VI 837
>gi|390177426|ref|XP_003736373.1| GA19507, isoform C [Drosophila pseudoobscura pseudoobscura]
gi|388859039|gb|EIM52446.1| GA19507, isoform C [Drosophila pseudoobscura pseudoobscura]
Length = 1227
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 240/482 (49%), Positives = 297/482 (61%), Gaps = 80/482 (16%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDEN-----GSPRGKKYKLVKTDSNSN--QYGSEGHT 81
GNSKYHYYGIR+KP S LN+ + D G G LV S+++ GS G
Sbjct: 768 GNSKYHYYGIRIKPGSLLNHHSMEDSKSMHGYGPSSGANGALVSVSSSTSGQMAGSNGSV 827
Query: 82 ----TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYR 137
+AGQ N S H+F + A + I LP +F I
Sbjct: 828 GMAGSAGQRNGT----SKKHSFKPETYEACIQY--IGDGSSALP---------SFPPIEL 872
Query: 138 EHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAF 197
H +F + D T +L+RE CE
Sbjct: 873 SH--SFSSELTLEDVDTFRALYRE-----------HCE---------------------- 897
Query: 198 VRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSK 257
+FLDA++ L+F T+E L R+FWRS DNNN DECEEEKYLSK
Sbjct: 898 -------------------SFLDAVLNLEFGTVEFLLRDFWRSSDNNNLDECEEEKYLSK 938
Query: 258 SKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTN 317
+KL+ L C VQ FVR VD+ FYQN V+V+IPDVLR IP +LT +IRNFAK +E WL
Sbjct: 939 TKLYLLCHCAEVQKFVREVDYQFYQNTVDVIIPDVLRSIPNALTQAIRNFAKNLELWLCE 998
Query: 318 AMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFH 377
+M G P+++ IK +AV AF Q LRRYTSLNHLAQAARAVLQN QI+QML+DLNRVDFH
Sbjct: 999 SMMGVPEQLAQIKTSAVSAFCQTLRRYTSLNHLAQAARAVLQNGAQISQMLSDLNRVDFH 1058
Query: 378 NVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTK 437
NVQEQA+WV QC ++VQ+LESDFK LQQQ+SLE+WA+WL+ VV + ++ + GKP + +
Sbjct: 1059 NVQEQAAWVSQCAPAVVQRLESDFKAALQQQSSLEQWASWLQLVVESAMEEYTGKPTYAR 1118
Query: 438 AARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIA 497
AARQFLLKWSFYSSM+IRDLTLRSA+SFGSFHLIRLL+DEYMFYL+EH++A A +T IA
Sbjct: 1119 AARQFLLKWSFYSSMIIRDLTLRSASSFGSFHLIRLLFDEYMFYLVEHKIAEAQQKTAIA 1178
Query: 498 VI 499
VI
Sbjct: 1179 VI 1180
>gi|443697380|gb|ELT97878.1| hypothetical protein CAPTEDRAFT_168129 [Capitella teleta]
Length = 622
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 246/475 (51%), Positives = 290/475 (61%), Gaps = 85/475 (17%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
GNSKYHYYGIR+K SPLN D+ + R K+ ++ S GH+ G+ +
Sbjct: 150 GNSKYHYYGIRIKATSPLNQYT-DDQTMALRQASVNQAKS-----RFKSIGHSGNGEGDG 203
Query: 89 NPSPQSGNH-NFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
Q H FLG S + +P TIE +D+ E D I
Sbjct: 204 VDHSQQQQHLQFLGSAS-------------EAMPNFGTIE-LDS---------EPLPDGI 240
Query: 148 VTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQ 207
+ + E L+ E CE
Sbjct: 241 THDNIKSFEILYTE-----------HCE-------------------------------- 257
Query: 208 NLVEVLIPDAFLDAIVTLDFSTIESLWREFWR--SQDNNNGDECEEEKYLSKSKLFCLSK 265
A LD +V L FS +E+LW+ FWR S D D + E+ L K L+ +S+
Sbjct: 258 ---------AILDIVVNLQFSLVEALWQSFWRNPSPDTPQAD-SDVERRLPKENLYAVSR 307
Query: 266 CVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQE 325
VQ FVRR D+ FYQ LVEVLIPDVLRPIP +LT +IRNFAK +ESWL ++M G P+E
Sbjct: 308 MTAVQKFVRRSDYAFYQALVEVLIPDVLRPIPSTLTQAIRNFAKSLESWLKSSMMGVPEE 367
Query: 326 MINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASW 385
M+ K+ +V AFAQ LRRYTSLNHLAQAARAVLQN+ QINQML DLNRVDF NVQEQASW
Sbjct: 368 MMKSKLGSVSAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLMDLNRVDFANVQEQASW 427
Query: 386 VCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLK 445
VCQCD S+VQQLE DFK TLQQQNSLE+W+ WL+ VVN L+P EG NF KAARQFLLK
Sbjct: 428 VCQCDDSVVQQLEMDFKKTLQQQNSLEQWSEWLEGVVNQCLQPHEGDTNFPKAARQFLLK 487
Query: 446 WSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
WSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 488 WSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHKVAAATGETPIAVMG 542
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 111/221 (50%), Gaps = 38/221 (17%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRG 60
GNSKYHYYGIR+K SPLN D+ + R
Sbjct: 150 GNSKYHYYGIRIKATSPLNQY-----------------------------TDDQTMALRQ 180
Query: 61 KKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSPQSGNH-NFLGDGSNAIPDFPEIDLSEDC 119
K+ ++ S GH+ G+ + Q H FLG S A+P+F I+L +
Sbjct: 181 ASVNQAKS-----RFKSIGHSGNGEGDGVDHSQQQQHLQFLGSASEAMPNFGTIELDSEP 235
Query: 120 LPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWR--SQDNNNGDECEEE 177
LP+ T +++ +F +Y EHCEA LD +V L FS +E+LW+ FWR S D D + E
Sbjct: 236 LPDGITHDNIKSFEILYTEHCEAILDIVVNLQFSLVEALWQSFWRNPSPDTPQAD-SDVE 294
Query: 178 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
+ L K L+ +S+ VQ FVRR D+ FYQ LVEVLIPD
Sbjct: 295 RRLPKENLYAVSRMTAVQKFVRRSDYAFYQALVEVLIPDVL 335
>gi|449277498|gb|EMC85643.1| Transcription factor RFX3, partial [Columba livia]
Length = 602
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 246/498 (49%), Positives = 296/498 (59%), Gaps = 103/498 (20%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 88 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 147
Query: 82 TAGQTNSNPSPQSGNHN-FLG---------DGSNAIPDFPEIDLSEDCLPEDCTIEDVDT 131
T QS +H FL D S +P+F E+++S LP+ T E
Sbjct: 148 TGTSVEQTVIAQSQHHQQFLALFHYVVMETDASRVLPEFGEVEIS--SLPDGTTFE---- 201
Query: 132 FRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKC 191
D +++SL+RE CE
Sbjct: 202 -------------------DIKSLQSLYRE-----------HCE---------------- 215
Query: 192 VPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC-- 249
A LD +V L FS IE LW+ FWR + D
Sbjct: 216 -------------------------AILDVVVNLQFSLIEKLWQTFWRYSPSAPPDGTTV 250
Query: 250 -------EEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTS 302
E E L K+KL L K + ++ D + YQ LVE+LIPDVLRPIP +LT
Sbjct: 251 TEPSNLSEIESRLPKAKLITLCKNESILKWMCNCDHVMYQALVEILIPDVLRPIPSALTQ 310
Query: 303 SIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNST 362
+IRNFAK +E WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++
Sbjct: 311 AIRNFAKSLEGWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTS 370
Query: 363 QINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVV 422
QINQML DLNRVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+
Sbjct: 371 QINQMLNDLNRVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVM 430
Query: 423 NAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL 482
LKP+EG+P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL
Sbjct: 431 MQALKPYEGRPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL 490
Query: 483 IEHQVALATGETPIAVIG 500
+EH+VA ATGETPIAV+G
Sbjct: 491 VEHRVAQATGETPIAVMG 508
>gi|449514461|ref|XP_004177214.1| PREDICTED: transcription factor RFX3 isoform 2 [Taeniopygia
guttata]
Length = 767
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 244/506 (48%), Positives = 295/506 (58%), Gaps = 111/506 (21%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVTDGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S +P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRVLPEFGEVEISS--LPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWR---------SQDNNNGDECEEE 252
A LD +V L FS IE LW+ FWR + N + E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSAPPDGTPVNEPSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPG-------------- 298
L K+KL L K + ++ D + YQ LVE+LIPDVLRPIP
Sbjct: 408 SRLPKAKLITLCKNESILKWMCNCDHVMYQALVEILIPDVLRPIPKWTSCIFSHGRMDSN 467
Query: 299 ----SLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAA 354
+LT +IRNFAK +E WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAA
Sbjct: 468 KFACALTQAIRNFAKSLEGWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAA 527
Query: 355 RAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEW 414
RAVLQN++QINQML DLNRVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+W
Sbjct: 528 RAVLQNTSQINQMLNDLNRVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQW 587
Query: 415 ANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLL 474
A WL NV+ LKP+EG+P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLL
Sbjct: 588 AAWLDNVMMQALKPYEGRPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLL 647
Query: 475 YDEYMFYLIEHQVALATGETPIAVIG 500
YDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 648 YDEYMFYLVEHRVAQATGETPIAVMG 673
>gi|449514464|ref|XP_004177215.1| PREDICTED: transcription factor RFX3 isoform 3 [Taeniopygia
guttata]
Length = 742
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 244/506 (48%), Positives = 295/506 (58%), Gaps = 111/506 (21%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 220 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVTDGFTGSGQQ 279
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S +P+F E+++S LP+ T E
Sbjct: 280 TGTSVEQTVIAQSQHHQQFLDASRVLPEFGEVEISS--LPDGTTFE-------------- 323
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 324 ---------DIKSLQSLYRE-----------HCE-------------------------- 337
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWR---------SQDNNNGDECEEE 252
A LD +V L FS IE LW+ FWR + N + E E
Sbjct: 338 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSAPPDGTPVNEPSNLSEIE 382
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPG-------------- 298
L K+KL L K + ++ D + YQ LVE+LIPDVLRPIP
Sbjct: 383 SRLPKAKLITLCKNESILKWMCNCDHVMYQALVEILIPDVLRPIPKWTSCIFSHGRMDSN 442
Query: 299 ----SLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAA 354
+LT +IRNFAK +E WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAA
Sbjct: 443 KFACALTQAIRNFAKSLEGWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAA 502
Query: 355 RAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEW 414
RAVLQN++QINQML DLNRVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+W
Sbjct: 503 RAVLQNTSQINQMLNDLNRVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQW 562
Query: 415 ANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLL 474
A WL NV+ LKP+EG+P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLL
Sbjct: 563 AAWLDNVMMQALKPYEGRPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLL 622
Query: 475 YDEYMFYLIEHQVALATGETPIAVIG 500
YDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 623 YDEYMFYLVEHRVAQATGETPIAVMG 648
>gi|114623630|ref|XP_520464.2| PREDICTED: transcription factor RFX3 isoform 5 [Pan troglodytes]
Length = 739
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 239/479 (49%), Positives = 291/479 (60%), Gaps = 85/479 (17%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T ED+ +
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFEDIKS---------- 352
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
++SL+RE CE V
Sbjct: 353 -------------LQSLYRE-----------HCE-------------------------V 363
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLF 261
Y NL P +FL + F+T + + E E L K+KL
Sbjct: 364 ILDIYYNL-----PFSFLSSFAIYSFATF------------IHTSNLSEIESRLPKAKLI 406
Query: 262 CLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQG 321
L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E WL+NAM
Sbjct: 407 TLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLEGWLSNAMNN 466
Query: 322 CPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQE 381
PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLNRVDF NVQE
Sbjct: 467 IPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLNRVDFANVQE 526
Query: 382 QASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQ 441
QASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+P+F KAARQ
Sbjct: 527 QASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGRPSFPKAARQ 586
Query: 442 FLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 587 FLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMG 645
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 104/220 (47%), Gaps = 28/220 (12%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRG 60
GNSKYHYYGIRVKPDSPLN + Y +R +P +
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRL--------QEDMQYMAMRQQP--------------MQQK 282
Query: 61 KKYK-LVKTDSNSNQYGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDC 119
++YK + K D ++ + G T QS +H D S A+P+F E+++S
Sbjct: 283 QRYKPMQKVDGVADGFTGSGQQTGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--S 340
Query: 120 LPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLW-REFWRSQDNNNGDECEEEK 178
LP+ T ED+ + +S+YREHCE LD L FS + S F +N E E
Sbjct: 341 LPDGTTFEDIKSLQSLYREHCEVILDIYYNLPFSFLSSFAIYSFATFIHTSNLSEIESR- 399
Query: 179 YLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
L K+KL L K + ++ D YQ LVE+LIPD
Sbjct: 400 -LPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVL 438
>gi|405976132|gb|EKC40651.1| Transcription factor RFX3 [Crassostrea gigas]
Length = 1006
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/287 (72%), Positives = 237/287 (82%), Gaps = 3/287 (1%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQ--DNNNGDECEEEKYLSKSKLFCLSKCVPVQAFV 273
+A +D +V L FS IE+LW+ FWR+Q D D + EK L K KL+ +S P+Q +V
Sbjct: 604 EAIVDVVVNLQFSLIEALWQGFWRNQPPDQLTADN-DYEKRLPKEKLYMVSSYEPLQQWV 662
Query: 274 RRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTA 333
R+ D+ FYQ LVEVLIPDVLRPIP SLT +IRNFAK +E+WL AM G P+EM+ KV+A
Sbjct: 663 RKADYTFYQALVEVLIPDVLRPIPSSLTQAIRNFAKSLENWLKGAMTGVPEEMVKTKVSA 722
Query: 334 VGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASL 393
V AFAQ LRRYTSLNHLAQAARAVLQN++QINQMLTDLNRVDF NVQEQASWVCQCD ++
Sbjct: 723 VSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLTDLNRVDFANVQEQASWVCQCDDAV 782
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMV 453
VQQL+ DFK TL+ QNSLE+WA WL+ VVN VLKP EG NF KAARQFLLKWSFYSSMV
Sbjct: 783 VQQLQDDFKKTLELQNSLEQWAVWLEGVVNQVLKPHEGSDNFPKAARQFLLKWSFYSSMV 842
Query: 454 IRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
IRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 843 IRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHKVAAATGETPIAVMG 889
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/196 (44%), Positives = 117/196 (59%), Gaps = 15/196 (7%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVK----TDSNSNQYGSEGHTTAG 84
GNSKYHYYGIR+K +SPLN I +E + R + K TDS+SN H + G
Sbjct: 496 GNSKYHYYGIRIKANSPLNQI-TDNETMAIRQQPMYHGKGKGETDSDSN------HGSHG 548
Query: 85 QTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFL 144
+ + Q + FLGD S A+P+F +ID S PE TI+ + +F +YREH EA +
Sbjct: 549 PHDPAKAQQEQHQQFLGDASAALPNFGDIDTSV-PFPEGITIDHIKSFEKMYREHAEAIV 607
Query: 145 DAIVTLDFSTIESLWREFWRSQ--DNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 202
D +V L FS IE+LW+ FWR+Q D D + EK L K KL+ +S P+Q +VR+ D
Sbjct: 608 DVVVNLQFSLIEALWQGFWRNQPPDQLTADN-DYEKRLPKEKLYMVSSYEPLQQWVRKAD 666
Query: 203 FLFYQNLVEVLIPDAF 218
+ FYQ LVEVLIPD
Sbjct: 667 YTFYQALVEVLIPDVL 682
>gi|241647636|ref|XP_002411177.1| rfx transcription factor, putative [Ixodes scapularis]
gi|215503807|gb|EEC13301.1| rfx transcription factor, putative [Ixodes scapularis]
Length = 487
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/297 (70%), Positives = 241/297 (81%), Gaps = 14/297 (4%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGD---------EC---EEEKYLSKSKLFCL 263
++FLDA++ L FS IESLW+ WR Q + G C ++EK LSKS LF L
Sbjct: 180 ESFLDAVMNLHFSAIESLWQSLWRVQGADCGSYSKFCLFIVRCLCRDQEKLLSKSSLFVL 239
Query: 264 SKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCP 323
KC P+Q FV+R D+ FYQNLV+VLIPDVLRPIP SLT +IRNFAK +E WLT+AMQG P
Sbjct: 240 CKCEPIQKFVQRADYQFYQNLVDVLIPDVLRPIPSSLTQAIRNFAKSLEGWLTSAMQGVP 299
Query: 324 QEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA 383
++M+ +KV + AFAQ LRRYTSLNHLAQAARAVLQNS+QINQML DLNRVDFHN EQA
Sbjct: 300 EDMVKVKVRKLSAFAQTLRRYTSLNHLAQAARAVLQNSSQINQMLADLNRVDFHN--EQA 357
Query: 384 SWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFL 443
SWVCQC+ LVQ+LE DFK TLQQQ SLE+WA WL VV+ VL+PF+GK +F KAARQFL
Sbjct: 358 SWVCQCEDGLVQRLEQDFKDTLQQQTSLEQWAAWLDGVVSLVLEPFQGKADFPKAARQFL 417
Query: 444 LKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
LKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEH+V+ ATG+TPIAV+G
Sbjct: 418 LKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHKVSKATGKTPIAVMG 474
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 121/208 (58%), Gaps = 18/208 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR---GKKYKLVKTDSNSNQYGSEGHTTAGQ 85
GNSKYHYYGIRVKP+SPLN I + R + K +T +S+ G+
Sbjct: 62 GNSKYHYYGIRVKPNSPLNQISEEVTTTALRQQSATQAKSAQTPDSSSGGGAAATVAVAT 121
Query: 86 TNSNPSPQSG---NHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEA 142
+ P + +H +LGD S+AIP E++ LP+ ++DVD F+ IYR+HCE+
Sbjct: 122 PVAATQPSAAAQQHHQYLGDASSAIPPLGEVEFGSSPLPDGIGMKDVDNFKRIYRDHCES 181
Query: 143 FLDAIVTLDFSTIESLWREFWRSQDNNNGD---------EC---EEEKYLSKSKLFCLSK 190
FLDA++ L FS IESLW+ WR Q + G C ++EK LSKS LF L K
Sbjct: 182 FLDAVMNLHFSAIESLWQSLWRVQGADCGSYSKFCLFIVRCLCRDQEKLLSKSSLFVLCK 241
Query: 191 CVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
C P+Q FV+R D+ FYQNLV+VLIPD
Sbjct: 242 CEPIQKFVQRADYQFYQNLVDVLIPDVL 269
>gi|156392417|ref|XP_001636045.1| predicted protein [Nematostella vectensis]
gi|156223144|gb|EDO43982.1| predicted protein [Nematostella vectensis]
Length = 492
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 238/501 (47%), Positives = 295/501 (58%), Gaps = 102/501 (20%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDE-----NGSPRGKKYKLVKTDSNSNQYGSEGHTTA 83
GNSKYHYYGIR+KP SPLN L+D+ SP +K +L G +G+ +
Sbjct: 62 GNSKYHYYGIRIKPSSPLNA--LTDDAQVALRQSPSTQK-RLKPASRVDGVEGVDGYPSQ 118
Query: 84 GQTNSNPSPQSGNHN---FLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
G TN + + QS + +LGD + +PDF ED P+ + +
Sbjct: 119 GGTNVDSAQQSQHQQHQQYLGDITQGLPDF------EDLDPKGTPLPE------------ 160
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 200
++ D T + ++RE CE
Sbjct: 161 -----GVLEEDLDTFQDMYRE-----------HCE------------------------- 179
Query: 201 VDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNN--------------- 245
AFLD +V L F+ +ESLW+ FWR +
Sbjct: 180 ----------------AFLDVVVNLQFALVESLWQSFWRHPSTTDVKREEPSTPTSGIKE 223
Query: 246 -GDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSI 304
GD+ + EK L K KL L + PV A+V+ D L YQ LVEVLIPDVLRPIP SLT +I
Sbjct: 224 LGDDEDNEKRLPKVKLAILCEYEPVVAYVKSCDHLLYQTLVEVLIPDVLRPIPSSLTQAI 283
Query: 305 RNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQI 364
RNFAKG+E WL ++ P++M ++KV++ AFAQ LRRYTSLNHLAQAARAVLQN++QI
Sbjct: 284 RNFAKGLEGWLAGSLSSVPKKMADVKVSSCCAFAQTLRRYTSLNHLAQAARAVLQNTSQI 343
Query: 365 NQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNA 424
QML DLNRVDF NVQEQA+WVCQCD +V + E DFKLTLQQQNSLE+WA WL+ VV+
Sbjct: 344 TQMLNDLNRVDFANVQEQAAWVCQCDDHMVYRFEQDFKLTLQQQNSLEQWATWLEGVVDQ 403
Query: 425 VLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
LKP EG N+ KAARQFLLKWSFYSSM+IRDLTLRSAASFGSFHLIRLLYDEYMFYL+E
Sbjct: 404 FLKPHEGSENYPKAARQFLLKWSFYSSMIIRDLTLRSAASFGSFHLIRLLYDEYMFYLVE 463
Query: 485 HQVALATGETPIAVIGSKESN 505
H+VA A G +P+AV+G N
Sbjct: 464 HKVAKAVGASPVAVMGEVSHN 484
>gi|121583926|ref|NP_001073517.1| transcription factor RFX3 [Danio rerio]
gi|292630872|sp|A0JMF8.1|RFX3_DANRE RecName: Full=Transcription factor RFX3; AltName: Full=Regulatory
factor X 3
gi|116487576|gb|AAI25863.1| Regulatory factor X, 3 (influences HLA class II expression) [Danio
rerio]
gi|182890880|gb|AAI65663.1| Rfx3 protein [Danio rerio]
Length = 765
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 240/489 (49%), Positives = 288/489 (58%), Gaps = 94/489 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYKLV-KTDSNS-NQYGSEGH 80
GNSKYHYYGIRVKPDSPLN + + + R +++K V K D S + + S G
Sbjct: 251 GNSKYHYYGIRVKPDSPLNRLQEDMQYMALRQQPVQQKQRFKPVQKMDGVSGDNFSSAGQ 310
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
T QS +H DGS LPE ++D ++
Sbjct: 311 HTPSAAEQTFIAQSQHHQQFLDGSR-------------ALPE---FVELDLGEAV----- 349
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 200
D + D +++L+RE CE
Sbjct: 350 ----DGVGPEDVKALQTLYRE-----------HCE------------------------- 369
Query: 201 VDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNN---------NGDECEE 251
A LD +V L F+ IE+LW+ FWR ++ N E
Sbjct: 370 ----------------AILDVVVNLQFNLIENLWQTFWRYSASSSVEGVTITENSGLSEI 413
Query: 252 EKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGV 311
E L +++L L + V ++ D L YQ LVE+LIPDVLRPIP +LT +IRNFAK +
Sbjct: 414 EGRLPRARLILLCRHEAVHKWMNTCDHLMYQALVEILIPDVLRPIPSALTQAIRNFAKSL 473
Query: 312 ESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDL 371
E WLTNAM P MIN KV+AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DL
Sbjct: 474 EGWLTNAMSSIPPRMINTKVSAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDL 533
Query: 372 NRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEG 431
NRVDF NVQEQASWVCQC+ +VQ+LE DFK TLQQQ+SLE+WA WL NVV +LKP+E
Sbjct: 534 NRVDFANVQEQASWVCQCEEGVVQRLEQDFKATLQQQSSLEQWAAWLDNVVTQILKPYED 593
Query: 432 KPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALAT 491
KP KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA AT
Sbjct: 594 KPTLPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQAT 653
Query: 492 GETPIAVIG 500
GET I V+G
Sbjct: 654 GETAIGVMG 662
>gi|194902350|ref|XP_001980678.1| GG17288 [Drosophila erecta]
gi|190652381|gb|EDV49636.1| GG17288 [Drosophila erecta]
Length = 1089
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 192/284 (67%), Positives = 237/284 (83%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
++FLDA++ L+F+T+E L R+FWR+ DNNN DECEEEKYLSK+KL+ L C VQ FVR
Sbjct: 758 ESFLDAVLNLEFNTVEFLLRDFWRASDNNNLDECEEEKYLSKTKLYLLCHCAEVQKFVRE 817
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
VD+ FYQN V+V+IPDVLR IP +LT +IRNFAK +E WL +M G P+++ IK +AV
Sbjct: 818 VDYQFYQNTVDVIIPDVLRSIPNALTQAIRNFAKNLEIWLCESMLGVPEQLAQIKTSAVS 877
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQ 395
AF Q LRRYTSLNHLAQAARAVLQN QI+QML+DLNRVDFHNVQEQA+WV QC ++VQ
Sbjct: 878 AFCQTLRRYTSLNHLAQAARAVLQNGAQISQMLSDLNRVDFHNVQEQAAWVSQCAPAVVQ 937
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIR 455
+LESDFK LQQQ+SLE+WA+WL+ VV + ++ + GKP + +AARQFLLKWSFYSSM+IR
Sbjct: 938 RLESDFKAALQQQSSLEQWASWLQLVVESAMEEYNGKPTYARAARQFLLKWSFYSSMIIR 997
Query: 456 DLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVI 499
DLTLRSA+SFGSFHLIRLL+DEYMFYL+EH++A A +T IAVI
Sbjct: 998 DLTLRSASSFGSFHLIRLLFDEYMFYLVEHKIAEAQDKTAIAVI 1041
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 129/218 (59%), Gaps = 7/218 (3%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRG 60
GNSKYHYYGIR+KP S LN+ + D+ + Y + ++
Sbjct: 625 GNSKYHYYGIRIKPGSLLNSQAMDDKQMLAAGYGPSSDGSGGPGSGPLVSVTSSTAGQLA 684
Query: 61 KKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCL 120
L + G++ HT P ++GDG++A+P FP I+L+
Sbjct: 685 GSNGLGGGHGQRHSGGTKKHTF------KPETYEACIQYIGDGTSALPSFPPIELNHS-F 737
Query: 121 PEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYL 180
+ T+EDVDTFR++YREHCE+FLDA++ L+F+T+E L R+FWR+ DNNN DECEEEKYL
Sbjct: 738 NSELTLEDVDTFRALYREHCESFLDAVLNLEFNTVEFLLRDFWRASDNNNLDECEEEKYL 797
Query: 181 SKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
SK+KL+ L C VQ FVR VD+ FYQN V+V+IPD
Sbjct: 798 SKTKLYLLCHCAEVQKFVREVDYQFYQNTVDVIIPDVL 835
>gi|195330109|ref|XP_002031750.1| GM26172 [Drosophila sechellia]
gi|194120693|gb|EDW42736.1| GM26172 [Drosophila sechellia]
Length = 1071
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 192/284 (67%), Positives = 237/284 (83%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
++FLDA++ L+F+T+E L R+FWR+ DNNN DECEEEKYLSK+KL+ L C VQ FVR
Sbjct: 740 ESFLDAVLNLEFNTVEFLLRDFWRASDNNNLDECEEEKYLSKTKLYLLCHCAEVQKFVRE 799
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
VD+ FYQN V+V+IPDVLR IP +LT +IRNFAK +E WL +M G P+++ IK +AV
Sbjct: 800 VDYQFYQNTVDVIIPDVLRSIPNALTQAIRNFAKNLEIWLCESMLGVPEQLAQIKTSAVS 859
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQ 395
AF Q LRRYTSLNHLAQAARAVLQN QI+QML+DLNRVDFHNVQEQA+WV QC ++VQ
Sbjct: 860 AFCQTLRRYTSLNHLAQAARAVLQNGAQISQMLSDLNRVDFHNVQEQAAWVSQCAPAVVQ 919
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIR 455
+LESDFK LQQQ+SLE+WA+WL+ VV + ++ + GKP + +AARQFLLKWSFYSSM+IR
Sbjct: 920 RLESDFKAALQQQSSLEQWASWLQLVVESAMEEYNGKPTYARAARQFLLKWSFYSSMIIR 979
Query: 456 DLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVI 499
DLTLRSA+SFGSFHLIRLL+DEYMFYL+EH++A A +T IAVI
Sbjct: 980 DLTLRSASSFGSFHLIRLLFDEYMFYLVEHKIAEAQDKTAIAVI 1023
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 128/218 (58%), Gaps = 7/218 (3%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRG 60
GNSKYHYYGIR+KP S LN+ + D+ + Y + ++
Sbjct: 607 GNSKYHYYGIRIKPGSLLNSQAMDDKQMLAAGYGPSSDGSGGPGSGPMVSVTSSTAGQLA 666
Query: 61 KKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCL 120
L + G++ HT P ++GDG++A+P FP I+L+
Sbjct: 667 GSNGLGGGHGQRHSNGTKKHTF------KPETYEACIQYIGDGTSALPSFPPIELNHS-F 719
Query: 121 PEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYL 180
+ T+EDVDTFR +YREHCE+FLDA++ L+F+T+E L R+FWR+ DNNN DECEEEKYL
Sbjct: 720 NSELTLEDVDTFRGLYREHCESFLDAVLNLEFNTVEFLLRDFWRASDNNNLDECEEEKYL 779
Query: 181 SKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
SK+KL+ L C VQ FVR VD+ FYQN V+V+IPD
Sbjct: 780 SKTKLYLLCHCAEVQKFVREVDYQFYQNTVDVIIPDVL 817
>gi|24645678|ref|NP_649999.2| Rfx, isoform J [Drosophila melanogaster]
gi|10726428|gb|AAF54526.2| Rfx, isoform J [Drosophila melanogaster]
Length = 897
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 192/284 (67%), Positives = 237/284 (83%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
++FLDA++ L+F+T+E L R+FWR+ DNNN DECEEEKYLSK+KL+ L C VQ FVR
Sbjct: 566 ESFLDAVLNLEFNTVEFLLRDFWRASDNNNLDECEEEKYLSKTKLYLLCHCAEVQKFVRE 625
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
VD+ FYQN V+V+IPDVLR IP +LT +IRNFAK +E WL +M G P+++ IK +AV
Sbjct: 626 VDYQFYQNTVDVIIPDVLRSIPNALTQAIRNFAKNLEIWLCESMLGVPEQLAQIKTSAVS 685
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQ 395
AF Q LRRYTSLNHLAQAARAVLQN QI+QML+DLNRVDFHNVQEQA+WV QC ++VQ
Sbjct: 686 AFCQTLRRYTSLNHLAQAARAVLQNGAQISQMLSDLNRVDFHNVQEQAAWVSQCAPAVVQ 745
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIR 455
+LESDFK LQQQ+SLE+WA+WL+ VV + ++ + GKP + +AARQFLLKWSFYSSM+IR
Sbjct: 746 RLESDFKAALQQQSSLEQWASWLQLVVESAMEEYNGKPTYARAARQFLLKWSFYSSMIIR 805
Query: 456 DLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVI 499
DLTLRSA+SFGSFHLIRLL+DEYMFYL+EH++A A +T IAVI
Sbjct: 806 DLTLRSASSFGSFHLIRLLFDEYMFYLVEHKIAEAQDKTAIAVI 849
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 100/228 (43%), Positives = 135/228 (59%), Gaps = 27/228 (11%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRG 60
GNSKYHYYGIR+KP S LN+ + D+ + Y P SD G P G
Sbjct: 433 GNSKYHYYGIRIKPGSLLNSQAMDDKQMLAAGYG---------------PSSDGTGGP-G 476
Query: 61 KKYKLVKTDSNSNQYG---------SEGHTTAGQTNS-NPSPQSGNHNFLGDGSNAIPDF 110
+ T S + Q + H+ + ++ P ++GDG++A+P F
Sbjct: 477 SGPMVSVTSSTAGQLTGSNGLGGGHGQRHSNGTKKHTFKPETYEACIQYIGDGTSALPSF 536
Query: 111 PEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNN 170
P I+L+ + T+EDVDTFR +YREHCE+FLDA++ L+F+T+E L R+FWR+ DNNN
Sbjct: 537 PPIELNHS-FNSELTLEDVDTFRGLYREHCESFLDAVLNLEFNTVEFLLRDFWRASDNNN 595
Query: 171 GDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
DECEEEKYLSK+KL+ L C VQ FVR VD+ FYQN V+V+IPD
Sbjct: 596 LDECEEEKYLSKTKLYLLCHCAEVQKFVREVDYQFYQNTVDVIIPDVL 643
>gi|442618464|ref|NP_001097738.2| Rfx, isoform I [Drosophila melanogaster]
gi|440217304|gb|ABW08636.2| Rfx, isoform I [Drosophila melanogaster]
Length = 889
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 192/284 (67%), Positives = 237/284 (83%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
++FLDA++ L+F+T+E L R+FWR+ DNNN DECEEEKYLSK+KL+ L C VQ FVR
Sbjct: 558 ESFLDAVLNLEFNTVEFLLRDFWRASDNNNLDECEEEKYLSKTKLYLLCHCAEVQKFVRE 617
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
VD+ FYQN V+V+IPDVLR IP +LT +IRNFAK +E WL +M G P+++ IK +AV
Sbjct: 618 VDYQFYQNTVDVIIPDVLRSIPNALTQAIRNFAKNLEIWLCESMLGVPEQLAQIKTSAVS 677
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQ 395
AF Q LRRYTSLNHLAQAARAVLQN QI+QML+DLNRVDFHNVQEQA+WV QC ++VQ
Sbjct: 678 AFCQTLRRYTSLNHLAQAARAVLQNGAQISQMLSDLNRVDFHNVQEQAAWVSQCAPAVVQ 737
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIR 455
+LESDFK LQQQ+SLE+WA+WL+ VV + ++ + GKP + +AARQFLLKWSFYSSM+IR
Sbjct: 738 RLESDFKAALQQQSSLEQWASWLQLVVESAMEEYNGKPTYARAARQFLLKWSFYSSMIIR 797
Query: 456 DLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVI 499
DLTLRSA+SFGSFHLIRLL+DEYMFYL+EH++A A +T IAVI
Sbjct: 798 DLTLRSASSFGSFHLIRLLFDEYMFYLVEHKIAEAQDKTAIAVI 841
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 100/228 (43%), Positives = 135/228 (59%), Gaps = 27/228 (11%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRG 60
GNSKYHYYGIR+KP S LN+ + D+ + Y P SD G P G
Sbjct: 425 GNSKYHYYGIRIKPGSLLNSQAMDDKQMLAAGYG---------------PSSDGTGGP-G 468
Query: 61 KKYKLVKTDSNSNQYG---------SEGHTTAGQTNS-NPSPQSGNHNFLGDGSNAIPDF 110
+ T S + Q + H+ + ++ P ++GDG++A+P F
Sbjct: 469 SGPMVSVTSSTAGQLTGSNGLGGGHGQRHSNGTKKHTFKPETYEACIQYIGDGTSALPSF 528
Query: 111 PEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNN 170
P I+L+ + T+EDVDTFR +YREHCE+FLDA++ L+F+T+E L R+FWR+ DNNN
Sbjct: 529 PPIELNHS-FNSELTLEDVDTFRGLYREHCESFLDAVLNLEFNTVEFLLRDFWRASDNNN 587
Query: 171 GDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
DECEEEKYLSK+KL+ L C VQ FVR VD+ FYQN V+V+IPD
Sbjct: 588 LDECEEEKYLSKTKLYLLCHCAEVQKFVREVDYQFYQNTVDVIIPDVL 635
>gi|386765471|ref|NP_001247021.1| Rfx, isoform C [Drosophila melanogaster]
gi|383292612|gb|AFH06339.1| Rfx, isoform C [Drosophila melanogaster]
Length = 911
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 192/284 (67%), Positives = 237/284 (83%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
++FLDA++ L+F+T+E L R+FWR+ DNNN DECEEEKYLSK+KL+ L C VQ FVR
Sbjct: 580 ESFLDAVLNLEFNTVEFLLRDFWRASDNNNLDECEEEKYLSKTKLYLLCHCAEVQKFVRE 639
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
VD+ FYQN V+V+IPDVLR IP +LT +IRNFAK +E WL +M G P+++ IK +AV
Sbjct: 640 VDYQFYQNTVDVIIPDVLRSIPNALTQAIRNFAKNLEIWLCESMLGVPEQLAQIKTSAVS 699
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQ 395
AF Q LRRYTSLNHLAQAARAVLQN QI+QML+DLNRVDFHNVQEQA+WV QC ++VQ
Sbjct: 700 AFCQTLRRYTSLNHLAQAARAVLQNGAQISQMLSDLNRVDFHNVQEQAAWVSQCAPAVVQ 759
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIR 455
+LESDFK LQQQ+SLE+WA+WL+ VV + ++ + GKP + +AARQFLLKWSFYSSM+IR
Sbjct: 760 RLESDFKAALQQQSSLEQWASWLQLVVESAMEEYNGKPTYARAARQFLLKWSFYSSMIIR 819
Query: 456 DLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVI 499
DLTLRSA+SFGSFHLIRLL+DEYMFYL+EH++A A +T IAVI
Sbjct: 820 DLTLRSASSFGSFHLIRLLFDEYMFYLVEHKIAEAQDKTAIAVI 863
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 100/228 (43%), Positives = 135/228 (59%), Gaps = 27/228 (11%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRG 60
GNSKYHYYGIR+KP S LN+ + D+ + Y P SD G P G
Sbjct: 447 GNSKYHYYGIRIKPGSLLNSQAMDDKQMLAAGYG---------------PSSDGTGGP-G 490
Query: 61 KKYKLVKTDSNSNQYG---------SEGHTTAGQTNS-NPSPQSGNHNFLGDGSNAIPDF 110
+ T S + Q + H+ + ++ P ++GDG++A+P F
Sbjct: 491 SGPMVSVTSSTAGQLTGSNGLGGGHGQRHSNGTKKHTFKPETYEACIQYIGDGTSALPSF 550
Query: 111 PEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNN 170
P I+L+ + T+EDVDTFR +YREHCE+FLDA++ L+F+T+E L R+FWR+ DNNN
Sbjct: 551 PPIELNH-SFNSELTLEDVDTFRGLYREHCESFLDAVLNLEFNTVEFLLRDFWRASDNNN 609
Query: 171 GDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
DECEEEKYLSK+KL+ L C VQ FVR VD+ FYQN V+V+IPD
Sbjct: 610 LDECEEEKYLSKTKLYLLCHCAEVQKFVREVDYQFYQNTVDVIIPDVL 657
>gi|195499779|ref|XP_002097092.1| GE24689 [Drosophila yakuba]
gi|194183193|gb|EDW96804.1| GE24689 [Drosophila yakuba]
Length = 1085
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 192/284 (67%), Positives = 237/284 (83%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
++FLDA++ L+F+T+E L R+FWR+ DNNN DECEEEKYLSK+KL+ L C VQ FVR
Sbjct: 754 ESFLDAVLNLEFNTVEFLLRDFWRASDNNNLDECEEEKYLSKTKLYLLCHCAEVQKFVRE 813
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
VD+ FYQN V+V+IPDVLR IP +LT +IRNFAK +E WL +M G P+++ IK +AV
Sbjct: 814 VDYQFYQNTVDVIIPDVLRSIPNALTQAIRNFAKNLEIWLCESMLGVPEQLAQIKTSAVS 873
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQ 395
AF Q LRRYTSLNHLAQAARAVLQN QI+QML+DLNRVDFHNVQEQA+WV QC ++VQ
Sbjct: 874 AFCQTLRRYTSLNHLAQAARAVLQNGAQISQMLSDLNRVDFHNVQEQAAWVSQCAPAVVQ 933
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIR 455
+LESDFK LQQQ+SLE+WA+WL+ VV + ++ + GKP + +AARQFLLKWSFYSSM+IR
Sbjct: 934 RLESDFKAALQQQSSLEQWASWLQLVVESAMEEYNGKPTYARAARQFLLKWSFYSSMIIR 993
Query: 456 DLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVI 499
DLTLRSA+SFGSFHLIRLL+DEYMFYL+EH++A A +T IAVI
Sbjct: 994 DLTLRSASSFGSFHLIRLLFDEYMFYLVEHKIAEAQDKTAIAVI 1037
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 129/218 (59%), Gaps = 7/218 (3%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRG 60
GNSKYHYYGIR+KP S LN+ + D+ + Y + ++
Sbjct: 621 GNSKYHYYGIRIKPGSLLNSQAMDDKQMLAAGYGPSSDGSGGPGSGPLVSVTSSTAGQLA 680
Query: 61 KKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCL 120
L + G++ HT P ++GDG++A+P FP I+L+
Sbjct: 681 GSNGLGGGHGQRHSGGTKKHTF------KPETYEACIQYIGDGTSALPSFPPIELNHS-F 733
Query: 121 PEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYL 180
+ T+EDVDTFR++YREHCE+FLDA++ L+F+T+E L R+FWR+ DNNN DECEEEKYL
Sbjct: 734 NSELTLEDVDTFRALYREHCESFLDAVLNLEFNTVEFLLRDFWRASDNNNLDECEEEKYL 793
Query: 181 SKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
SK+KL+ L C VQ FVR VD+ FYQN V+V+IPD
Sbjct: 794 SKTKLYLLCHCAEVQKFVREVDYQFYQNTVDVIIPDVL 831
>gi|442618462|ref|NP_001247023.2| Rfx, isoform H [Drosophila melanogaster]
gi|440217303|gb|AFH06341.2| Rfx, isoform H [Drosophila melanogaster]
Length = 919
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 192/284 (67%), Positives = 237/284 (83%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
++FLDA++ L+F+T+E L R+FWR+ DNNN DECEEEKYLSK+KL+ L C VQ FVR
Sbjct: 588 ESFLDAVLNLEFNTVEFLLRDFWRASDNNNLDECEEEKYLSKTKLYLLCHCAEVQKFVRE 647
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
VD+ FYQN V+V+IPDVLR IP +LT +IRNFAK +E WL +M G P+++ IK +AV
Sbjct: 648 VDYQFYQNTVDVIIPDVLRSIPNALTQAIRNFAKNLEIWLCESMLGVPEQLAQIKTSAVS 707
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQ 395
AF Q LRRYTSLNHLAQAARAVLQN QI+QML+DLNRVDFHNVQEQA+WV QC ++VQ
Sbjct: 708 AFCQTLRRYTSLNHLAQAARAVLQNGAQISQMLSDLNRVDFHNVQEQAAWVSQCAPAVVQ 767
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIR 455
+LESDFK LQQQ+SLE+WA+WL+ VV + ++ + GKP + +AARQFLLKWSFYSSM+IR
Sbjct: 768 RLESDFKAALQQQSSLEQWASWLQLVVESAMEEYNGKPTYARAARQFLLKWSFYSSMIIR 827
Query: 456 DLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVI 499
DLTLRSA+SFGSFHLIRLL+DEYMFYL+EH++A A +T IAVI
Sbjct: 828 DLTLRSASSFGSFHLIRLLFDEYMFYLVEHKIAEAQDKTAIAVI 871
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 100/228 (43%), Positives = 135/228 (59%), Gaps = 27/228 (11%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRG 60
GNSKYHYYGIR+KP S LN+ + D+ + Y P SD G P G
Sbjct: 455 GNSKYHYYGIRIKPGSLLNSQAMDDKQMLAAGYG---------------PSSDGTGGP-G 498
Query: 61 KKYKLVKTDSNSNQYG---------SEGHTTAGQTNS-NPSPQSGNHNFLGDGSNAIPDF 110
+ T S + Q + H+ + ++ P ++GDG++A+P F
Sbjct: 499 SGPMVSVTSSTAGQLTGSNGLGGGHGQRHSNGTKKHTFKPETYEACIQYIGDGTSALPSF 558
Query: 111 PEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNN 170
P I+L+ + T+EDVDTFR +YREHCE+FLDA++ L+F+T+E L R+FWR+ DNNN
Sbjct: 559 PPIELNH-SFNSELTLEDVDTFRGLYREHCESFLDAVLNLEFNTVEFLLRDFWRASDNNN 617
Query: 171 GDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
DECEEEKYLSK+KL+ L C VQ FVR VD+ FYQN V+V+IPD
Sbjct: 618 LDECEEEKYLSKTKLYLLCHCAEVQKFVREVDYQFYQNTVDVIIPDVL 665
>gi|194740942|ref|XP_001952948.1| GF17463 [Drosophila ananassae]
gi|190626007|gb|EDV41531.1| GF17463 [Drosophila ananassae]
Length = 1066
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 191/284 (67%), Positives = 237/284 (83%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
++FLDA++ L+F+T+E L R+FWR+ DNNN DECEEEKYLSKSKL+ L C VQ FVR
Sbjct: 738 ESFLDAVLNLEFNTVEFLLRDFWRASDNNNLDECEEEKYLSKSKLYLLCHCAEVQKFVRE 797
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
VD+ FYQN V+V+IPDVLR IP +LT +IRNFAK +E WL ++ G P++++ IK +AV
Sbjct: 798 VDYQFYQNTVDVIIPDVLRSIPNALTQAIRNFAKNLEIWLCESLMGVPEQLVQIKTSAVS 857
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQ 395
AF Q LRRYTSLNHLAQAARAVLQN QI+QML DLNRVDFHNVQEQA+WV QC +VQ
Sbjct: 858 AFCQTLRRYTSLNHLAQAARAVLQNGAQISQMLNDLNRVDFHNVQEQAAWVSQCAPDVVQ 917
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIR 455
+LE+DFK LQQQ+SLE+WA+WL+ VV + ++ + GKP++ +AARQFLLKWSFYSSM+IR
Sbjct: 918 RLENDFKAALQQQSSLEQWASWLQCVVESAMEEYTGKPSYARAARQFLLKWSFYSSMIIR 977
Query: 456 DLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVI 499
DLTLRSA+SFGSFHLIRLL+DEYMFYL+EH++A A +T IAVI
Sbjct: 978 DLTLRSASSFGSFHLIRLLFDEYMFYLVEHKIAEAQHKTAIAVI 1021
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 98/210 (46%), Positives = 130/210 (61%), Gaps = 21/210 (10%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDEN------------GSPRGKKYKLVKTDSNS---- 72
GNSKYHYYGIR+KP S LN+ + D++ L S++
Sbjct: 607 GNSKYHYYGIRIKPGSLLNHHSMDDKSMLGSGYGPSSGGSGSSSAGGTLASVSSSTAGQM 666
Query: 73 --NQYGSEGHTTAGQTNSNPSPQSGNH--NFLGDGSNAIPDFPEIDLSEDCLPEDCTIED 128
N G GH +G P++ ++GDGS+A+P FP I+L+ + T+ED
Sbjct: 667 GPNGLGGPGHRHSGVKKHTIKPEAYEACIQYIGDGSSALPSFPAIELNHS-FNSELTLED 725
Query: 129 VDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCL 188
VDTFR++YREHCE+FLDA++ L+F+T+E L R+FWR+ DNNN DECEEEKYLSKSKL+ L
Sbjct: 726 VDTFRALYREHCESFLDAVLNLEFNTVEFLLRDFWRASDNNNLDECEEEKYLSKSKLYLL 785
Query: 189 SKCVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
C VQ FVR VD+ FYQN V+V+IPD
Sbjct: 786 CHCAEVQKFVREVDYQFYQNTVDVIIPDVL 815
>gi|348536729|ref|XP_003455848.1| PREDICTED: MHC class II regulatory factor RFX1 [Oreochromis
niloticus]
Length = 857
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 233/484 (48%), Positives = 286/484 (59%), Gaps = 87/484 (17%)
Query: 29 GNSKYHYYGIRVKPDSPL-------NNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHT 81
GNSKYHYYG+R+K SPL ++ + + S + + + K+ +N
Sbjct: 374 GNSKYHYYGLRIKSGSPLLRLMDEQQHMAMRQQPFSQKNRVKPVQKSQGIANGTAGGIGQ 433
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
G T + S Q + + S +PDF EIDL + LP+ I EH +
Sbjct: 434 QQGSTLCDISAQVHQYQQFLEASKTLPDFVEIDLQDRTLPD-----------GILLEHLK 482
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
AF ++L+RE CE
Sbjct: 483 AF------------QTLYRE-----------HCE-------------------------- 493
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC----EEEKYLSK 257
A LD +V L F+ +E+LW+ FWR +N+ + E EK L K
Sbjct: 494 ---------------AILDVMVNLQFTLVETLWKSFWRFSQSNDAESLNLHNESEKRLPK 538
Query: 258 SKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTN 317
S L L K PV + R D L YQ LVE+LI DVLRPIP +LT +IRNFAK +E+WLT
Sbjct: 539 SCLVVLCKFEPVLRWTRECDNLLYQTLVEILISDVLRPIPSALTQAIRNFAKSLENWLTG 598
Query: 318 AMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFH 377
AM P+EM+ IKV +G+F+Q LRRYTSLNHLAQAARAVLQNS QINQML+DLNRVDF+
Sbjct: 599 AMMNIPEEMVRIKVVCIGSFSQTLRRYTSLNHLAQAARAVLQNSAQINQMLSDLNRVDFN 658
Query: 378 NVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKP-NFT 436
NVQEQASWVCQC+ ++Q+LE DFK TLQQQNSLE+WA WL VV+ VLKP+E P
Sbjct: 659 NVQEQASWVCQCEDRVIQRLEQDFKATLQQQNSLEQWATWLDGVVSQVLKPYEHNPMALP 718
Query: 437 KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPI 496
KAA+ FLL WSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPI
Sbjct: 719 KAAKVFLLNWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPI 778
Query: 497 AVIG 500
AV+
Sbjct: 779 AVMA 782
>gi|195143781|ref|XP_002012875.1| GL23834 [Drosophila persimilis]
gi|194101818|gb|EDW23861.1| GL23834 [Drosophila persimilis]
Length = 438
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 193/284 (67%), Positives = 236/284 (83%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
++FLDA++ L+F T+E L R+FWRS DNNN DECEEEKYLSK+KL+ L C VQ FVR
Sbjct: 108 ESFLDAVLNLEFGTVEFLLRDFWRSSDNNNLDECEEEKYLSKTKLYLLCHCAEVQKFVRE 167
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
VD+ FYQN V+V+IPDVLR IP +LT +IRNFAK +E WL +M G P+++ IK +AV
Sbjct: 168 VDYQFYQNTVDVIIPDVLRSIPNALTQAIRNFAKNLELWLCESMMGVPEQLAQIKTSAVS 227
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQ 395
AF Q LRRYTSLNHLAQAARAVLQN QI+QML+DLNRVDFHNVQEQA+WV QC ++VQ
Sbjct: 228 AFCQTLRRYTSLNHLAQAARAVLQNGAQISQMLSDLNRVDFHNVQEQAAWVSQCAPAVVQ 287
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIR 455
+LESDFK LQQQ+SLE+WA+WL+ VV + ++ + GKP + +AARQFLLKWSFYSSM+IR
Sbjct: 288 RLESDFKAALQQQSSLEQWASWLQLVVESAMEEYTGKPTYARAARQFLLKWSFYSSMIIR 347
Query: 456 DLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVI 499
DLTLRSA+SFGSFHLIRLL+DEYMFYL+EH++A A +T IAVI
Sbjct: 348 DLTLRSASSFGSFHLIRLLFDEYMFYLVEHKIAEAQQKTAIAVI 391
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 113/174 (64%), Gaps = 13/174 (7%)
Query: 57 SPRGKKYKLVKTDSNSNQY-GSEGHT----TAGQTNSN-------PSPQSGNHNFLGDGS 104
S RGK+ + + S S Q GS G +AGQ N P ++GDGS
Sbjct: 13 SSRGKRVPVSVSSSTSGQMAGSNGSVGMAGSAGQRNGTSKKHSFKPETYEACIQYIGDGS 72
Query: 105 NAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWR 164
+A+P FP I+LS + T+EDVDTFR++YREHCE+FLDA++ L+F T+E L R+FWR
Sbjct: 73 SALPSFPPIELSHS-FSSELTLEDVDTFRALYREHCESFLDAVLNLEFGTVEFLLRDFWR 131
Query: 165 SQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
S DNNN DECEEEKYLSK+KL+ L C VQ FVR VD+ FYQN V+V+IPD
Sbjct: 132 SSDNNNLDECEEEKYLSKTKLYLLCHCAEVQKFVREVDYQFYQNTVDVIIPDVL 185
>gi|195443606|ref|XP_002069491.1| GK11555 [Drosophila willistoni]
gi|194165576|gb|EDW80477.1| GK11555 [Drosophila willistoni]
Length = 1147
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 191/284 (67%), Positives = 238/284 (83%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
++FLDA++ L+F T+E L R+FWR+ DNNN DECEEEKYLSK+KL+ L C VQ FVR
Sbjct: 816 ESFLDAVLNLEFGTVEFLLRDFWRTTDNNNLDECEEEKYLSKAKLYLLCHCAEVQKFVRE 875
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
VD+ FYQN V+V+IPDVLR IP +LT +IRNFAK +E WL +M G P+++ IK +AV
Sbjct: 876 VDYQFYQNTVDVIIPDVLRSIPNALTQAIRNFAKNLELWLCESMLGVPEQLAQIKTSAVS 935
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQ 395
AF Q LRRYTSLNHLAQAARAVLQN QI+QML+DLNRVDFHNVQEQA+WV QC ++VQ
Sbjct: 936 AFCQTLRRYTSLNHLAQAARAVLQNGAQISQMLSDLNRVDFHNVQEQAAWVSQCAPAVVQ 995
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIR 455
+LE+DFK LQQQ+SLE+WA+WL+ VV + ++ + GKP++++AARQFLLKWSFYSSM+IR
Sbjct: 996 RLENDFKAALQQQSSLEQWASWLQLVVESAMEEYTGKPSYSRAARQFLLKWSFYSSMIIR 1055
Query: 456 DLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVI 499
DLTLRSA+SFGSFHLIRLL+DEYMFYL+EH++A A +T IAVI
Sbjct: 1056 DLTLRSASSFGSFHLIRLLFDEYMFYLVEHKIAEAQQKTAIAVI 1099
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 131/222 (59%), Gaps = 34/222 (15%)
Query: 29 GNSKYHYYGIRVKPDSPLNN-IPLSDEN-------------------------------G 56
GNSKYHYYGIR+KP S LN + D++ G
Sbjct: 674 GNSKYHYYGIRIKPGSLLNQQSSMEDKSLHGHNSYGPSSGSSGTIMSVSSSTAASSQLGG 733
Query: 57 SPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLS 116
S G +V T ++ S TTA + + P ++GDG++A+P FP I+LS
Sbjct: 734 SSNGSN-GMVCTPNSHRSSNSSSSTTAKKHSFKPETYEACIQYIGDGTSALPSFPPIELS 792
Query: 117 EDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEE 176
+ + T+EDVDTFR++YREHCE+FLDA++ L+F T+E L R+FWR+ DNNN DECEE
Sbjct: 793 HN-FNSELTLEDVDTFRALYREHCESFLDAVLNLEFGTVEFLLRDFWRTTDNNNLDECEE 851
Query: 177 EKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
EKYLSK+KL+ L C VQ FVR VD+ FYQN V+V+IPD
Sbjct: 852 EKYLSKAKLYLLCHCAEVQKFVREVDYQFYQNTVDVIIPDVL 893
>gi|6580397|emb|CAB63452.1| RFX transcription factor [Drosophila melanogaster]
Length = 897
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 192/284 (67%), Positives = 237/284 (83%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
++FLDA++ L+F+T+E L R+FWR+ DNNN DECEEEKYLSK+KL+ L C VQ FVR
Sbjct: 566 ESFLDAVLNLEFNTVEFLLRDFWRASDNNNLDECEEEKYLSKTKLYLLCHCAEVQKFVRE 625
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
VD+ FYQN V+V+IPDVLR IP +LT +IRNFAK +E WL +M G P+++ IK +AV
Sbjct: 626 VDYQFYQNTVDVIIPDVLRSIPNALTQAIRNFAKNLEIWLCESMLGVPEQLAQIKNSAVS 685
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQ 395
AF Q LRRYTSLNHLAQAARAVLQN QI+QML+DLNRVDFHNVQEQA+WV QC ++VQ
Sbjct: 686 AFCQTLRRYTSLNHLAQAARAVLQNGAQISQMLSDLNRVDFHNVQEQAAWVSQCAPAVVQ 745
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIR 455
+LESDFK LQQQ+SLE+WA+WL+ VV + ++ + GKP + +AARQFLLKWSFYSSM+IR
Sbjct: 746 RLESDFKAALQQQSSLEQWASWLQLVVESAMEEYNGKPTYARAARQFLLKWSFYSSMIIR 805
Query: 456 DLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVI 499
DLTLRSA+SFGSFHLIRLL+DEYMFYL+EH++A A +T IAVI
Sbjct: 806 DLTLRSASSFGSFHLIRLLFDEYMFYLVEHKIAEAQDKTAIAVI 849
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 100/228 (43%), Positives = 135/228 (59%), Gaps = 27/228 (11%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRG 60
GNSKYHYYGIR+KP S LN+ + D+ + Y P SD G P G
Sbjct: 433 GNSKYHYYGIRIKPGSLLNSQAMDDKQMLAAGYG---------------PSSDGTGGP-G 476
Query: 61 KKYKLVKTDSNSNQYG---------SEGHTTAGQTNS-NPSPQSGNHNFLGDGSNAIPDF 110
+ T S + Q + H+ + ++ P ++GDG++A+P F
Sbjct: 477 SGPMVSVTSSTAGQLTGSNGLGGGHGQRHSNGTKKHTFKPETYEACIQYIGDGTSALPSF 536
Query: 111 PEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNN 170
P I+L+ + T+EDVDTFR +YREHCE+FLDA++ L+F+T+E L R+FWR+ DNNN
Sbjct: 537 PPIELNHS-FNSELTLEDVDTFRGLYREHCESFLDAVLNLEFNTVEFLLRDFWRASDNNN 595
Query: 171 GDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
DECEEEKYLSK+KL+ L C VQ FVR VD+ FYQN V+V+IPD
Sbjct: 596 LDECEEEKYLSKTKLYLLCHCAEVQKFVREVDYQFYQNTVDVIIPDVL 643
>gi|442618460|ref|NP_001247022.2| Rfx, isoform G [Drosophila melanogaster]
gi|440217302|gb|AFH06340.2| Rfx, isoform G [Drosophila melanogaster]
Length = 860
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 192/284 (67%), Positives = 237/284 (83%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
++FLDA++ L+F+T+E L R+FWR+ DNNN DECEEEKYLSK+KL+ L C VQ FVR
Sbjct: 529 ESFLDAVLNLEFNTVEFLLRDFWRASDNNNLDECEEEKYLSKTKLYLLCHCAEVQKFVRE 588
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
VD+ FYQN V+V+IPDVLR IP +LT +IRNFAK +E WL +M G P+++ IK +AV
Sbjct: 589 VDYQFYQNTVDVIIPDVLRSIPNALTQAIRNFAKNLEIWLCESMLGVPEQLAQIKTSAVS 648
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQ 395
AF Q LRRYTSLNHLAQAARAVLQN QI+QML+DLNRVDFHNVQEQA+WV QC ++VQ
Sbjct: 649 AFCQTLRRYTSLNHLAQAARAVLQNGAQISQMLSDLNRVDFHNVQEQAAWVSQCAPAVVQ 708
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIR 455
+LESDFK LQQQ+SLE+WA+WL+ VV + ++ + GKP + +AARQFLLKWSFYSSM+IR
Sbjct: 709 RLESDFKAALQQQSSLEQWASWLQLVVESAMEEYNGKPTYARAARQFLLKWSFYSSMIIR 768
Query: 456 DLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVI 499
DLTLRSA+SFGSFHLIRLL+DEYMFYL+EH++A A +T IAVI
Sbjct: 769 DLTLRSASSFGSFHLIRLLFDEYMFYLVEHKIAEAQDKTAIAVI 812
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 100/228 (43%), Positives = 135/228 (59%), Gaps = 27/228 (11%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRG 60
GNSKYHYYGIR+KP S LN+ + D+ + Y P SD G P G
Sbjct: 396 GNSKYHYYGIRIKPGSLLNSQAMDDKQMLAAGYG---------------PSSDGTGGP-G 439
Query: 61 KKYKLVKTDSNSNQY---------GSEGHTTAGQTNS-NPSPQSGNHNFLGDGSNAIPDF 110
+ T S + Q + H+ + ++ P ++GDG++A+P F
Sbjct: 440 SGPMVSVTSSTAGQLTGSNGLGGGHGQRHSNGTKKHTFKPETYEACIQYIGDGTSALPSF 499
Query: 111 PEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNN 170
P I+L+ + T+EDVDTFR +YREHCE+FLDA++ L+F+T+E L R+FWR+ DNNN
Sbjct: 500 PPIELNHS-FNSELTLEDVDTFRGLYREHCESFLDAVLNLEFNTVEFLLRDFWRASDNNN 558
Query: 171 GDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
DECEEEKYLSK+KL+ L C VQ FVR VD+ FYQN V+V+IPD
Sbjct: 559 LDECEEEKYLSKTKLYLLCHCAEVQKFVREVDYQFYQNTVDVIIPDVL 606
>gi|442618458|ref|NP_001262464.1| Rfx, isoform F [Drosophila melanogaster]
gi|440217301|gb|AGB95846.1| Rfx, isoform F [Drosophila melanogaster]
Length = 882
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 192/284 (67%), Positives = 237/284 (83%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
++FLDA++ L+F+T+E L R+FWR+ DNNN DECEEEKYLSK+KL+ L C VQ FVR
Sbjct: 551 ESFLDAVLNLEFNTVEFLLRDFWRASDNNNLDECEEEKYLSKTKLYLLCHCAEVQKFVRE 610
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
VD+ FYQN V+V+IPDVLR IP +LT +IRNFAK +E WL +M G P+++ IK +AV
Sbjct: 611 VDYQFYQNTVDVIIPDVLRSIPNALTQAIRNFAKNLEIWLCESMLGVPEQLAQIKTSAVS 670
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQ 395
AF Q LRRYTSLNHLAQAARAVLQN QI+QML+DLNRVDFHNVQEQA+WV QC ++VQ
Sbjct: 671 AFCQTLRRYTSLNHLAQAARAVLQNGAQISQMLSDLNRVDFHNVQEQAAWVSQCAPAVVQ 730
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIR 455
+LESDFK LQQQ+SLE+WA+WL+ VV + ++ + GKP + +AARQFLLKWSFYSSM+IR
Sbjct: 731 RLESDFKAALQQQSSLEQWASWLQLVVESAMEEYNGKPTYARAARQFLLKWSFYSSMIIR 790
Query: 456 DLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVI 499
DLTLRSA+SFGSFHLIRLL+DEYMFYL+EH++A A +T IAVI
Sbjct: 791 DLTLRSASSFGSFHLIRLLFDEYMFYLVEHKIAEAQDKTAIAVI 834
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 100/228 (43%), Positives = 135/228 (59%), Gaps = 27/228 (11%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRG 60
GNSKYHYYGIR+KP S LN+ + D+ + Y P SD G P G
Sbjct: 418 GNSKYHYYGIRIKPGSLLNSQAMDDKQMLAAGYG---------------PSSDGTGGP-G 461
Query: 61 KKYKLVKTDSNSNQY---------GSEGHTTAGQTNS-NPSPQSGNHNFLGDGSNAIPDF 110
+ T S + Q + H+ + ++ P ++GDG++A+P F
Sbjct: 462 SGPMVSVTSSTAGQLTGSNGLGGGHGQRHSNGTKKHTFKPETYEACIQYIGDGTSALPSF 521
Query: 111 PEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNN 170
P I+L+ + T+EDVDTFR +YREHCE+FLDA++ L+F+T+E L R+FWR+ DNNN
Sbjct: 522 PPIELNHS-FNSELTLEDVDTFRGLYREHCESFLDAVLNLEFNTVEFLLRDFWRASDNNN 580
Query: 171 GDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
DECEEEKYLSK+KL+ L C VQ FVR VD+ FYQN V+V+IPD
Sbjct: 581 LDECEEEKYLSKTKLYLLCHCAEVQKFVREVDYQFYQNTVDVIIPDVL 628
>gi|348573067|ref|XP_003472313.1| PREDICTED: transcription factor RFX3-like [Cavia porcellus]
Length = 709
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 227/451 (50%), Positives = 271/451 (60%), Gaps = 87/451 (19%)
Query: 60 GKKYK-LVKTDSNSNQYGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSED 118
G +YK + K D ++ + G T QS +H D S A+P+F E+++S
Sbjct: 242 GTRYKPMQKVDGVADGFTGSGQQTGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS-- 299
Query: 119 CLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEK 178
LP+ T E D +++SL+RE CE
Sbjct: 300 SLPDGTTFE-----------------------DIKSLQSLYRE-----------HCE--- 322
Query: 179 YLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFW 238
A LD +V L FS IE LW+ FW
Sbjct: 323 --------------------------------------AILDVVVNLQFSLIEKLWQTFW 344
Query: 239 RSQDNNNGDEC---------EEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLI 289
R + D E E L K+KL L K + ++ D YQ LVE+LI
Sbjct: 345 RYSPSTPTDGTTITESSNLSEIESRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILI 404
Query: 290 PDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNH 349
PDVLRPIP +LT +IRNFAK +E WL+NAM PQ MI KV AV AFAQ LRRYTSLNH
Sbjct: 405 PDVLRPIPSALTQAIRNFAKSLEGWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNH 464
Query: 350 LAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQN 409
LAQAARAVLQN++QINQML DLNRVDF NVQEQASWVCQCD S+VQ+LE+DFK+TLQQQ+
Sbjct: 465 LAQAARAVLQNTSQINQMLNDLNRVDFANVQEQASWVCQCDDSMVQRLETDFKMTLQQQS 524
Query: 410 SLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFH 469
+LE+WA WL NV+ LKP+EG+P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFH
Sbjct: 525 TLEQWAAWLDNVMMQALKPYEGRPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFH 584
Query: 470 LIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
LIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 585 LIRLLYDEYMFYLVEHRVAQATGETPIAVMG 615
>gi|395512976|ref|XP_003760708.1| PREDICTED: MHC class II regulatory factor RFX1 [Sarcophilus
harrisii]
Length = 966
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 201/306 (65%), Positives = 237/306 (77%), Gaps = 8/306 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC------EEEKYLSKSKLFCLSKCVPV 269
+A +D ++ L F+ +E+LW+ FWR N + E EK L KS L LSK PV
Sbjct: 605 EAIVDVMINLQFTLVETLWKTFWRYNLNQPSEATPLAVHDEAEKRLPKSSLVLLSKYEPV 664
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D L YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLTNAM P+EM+ +
Sbjct: 665 LKWTKDCDNLLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTNAMMNIPEEMVRV 724
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A AFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 725 KVAAASAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 784
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G +F KAA+ FLLKWSFY
Sbjct: 785 EDRVVQRLEQDFKVTLQQQNSLEQWAGWLDGVVSQVLKPYQGSASFPKAAKLFLLKWSFY 844
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + S
Sbjct: 845 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLAS 902
Query: 510 SQNPMD 515
S NP+D
Sbjct: 903 SLNPLD 908
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 108/203 (53%), Gaps = 15/203 (7%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYK-------LVKTDSNSNQYGSEGHT 81
GNSKYHYYG+R+K +SPL + ++ + RG+ + + K + +N
Sbjct: 488 GNSKYHYYGLRIKANSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGQQQ 547
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
AG S+ S Q + D S ++P+F E+DL LPE ED+ F+ +YREHCE
Sbjct: 548 AAGL--SDISAQVQQYQQFLDASRSLPEFTELDLQGKVLPEGVGPEDIKAFQVLYREHCE 605
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC------EEEKYLSKSKLFCLSKCVPVQ 195
A +D ++ L F+ +E+LW+ FWR N + E EK L KS L LSK PV
Sbjct: 606 AIVDVMINLQFTLVETLWKTFWRYNLNQPSEATPLAVHDEAEKRLPKSSLVLLSKYEPVL 665
Query: 196 AFVRRVDFLFYQNLVEVLIPDAF 218
+ + D L YQ LVE+LIPD
Sbjct: 666 KWTKDCDNLLYQGLVEILIPDVL 688
>gi|327264025|ref|XP_003216817.1| PREDICTED: MHC class II regulatory factor RFX1-like [Anolis
carolinensis]
Length = 970
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/306 (66%), Positives = 237/306 (77%), Gaps = 8/306 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC------EEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR N + E EK L KS L LSK PV
Sbjct: 608 EAIVDVMVNLQFTLVETLWKTFWRYNMNQPSEATSIVIHDEAEKRLPKSCLVTLSKYEPV 667
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D L YQ LVEVLIP+VLRPIP +LT +IRNFAK +ESWLTNAM P+EM+ +
Sbjct: 668 LKWTKDCDNLLYQGLVEVLIPEVLRPIPSALTQAIRNFAKSLESWLTNAMMNIPEEMVRV 727
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A AFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 728 KVAAASAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 787
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP+ G P+F KAA+ FLLKWSFY
Sbjct: 788 EDRVVQRLEQDFKMTLQQQNSLEQWAVWLDGVVSQVLKPYHGSPSFPKAAKLFLLKWSFY 847
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + S
Sbjct: 848 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLTS 905
Query: 510 SQNPMD 515
S NP+D
Sbjct: 906 SLNPLD 911
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 107/203 (52%), Gaps = 15/203 (7%)
Query: 29 GNSKYHYYGIRVKPDSPL-------NNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHT 81
GNSKYHYYG+R+K +SPL ++ + + S + + + K + +N
Sbjct: 491 GNSKYHYYGLRIKANSPLLRLMEDQQHLAMRQQPFSQKQRLKSIQKMEGMTNGVAVGQQQ 550
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
+G S+ S Q + D S ++PDF EIDL LPE EDV F+ +YREHCE
Sbjct: 551 ASGL--SDISAQVQQYQQFLDASRSLPDFAEIDLQGKTLPEGIVPEDVKAFQLLYREHCE 608
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC------EEEKYLSKSKLFCLSKCVPVQ 195
A +D +V L F+ +E+LW+ FWR N + E EK L KS L LSK PV
Sbjct: 609 AIVDVMVNLQFTLVETLWKTFWRYNMNQPSEATSIVIHDEAEKRLPKSCLVTLSKYEPVL 668
Query: 196 AFVRRVDFLFYQNLVEVLIPDAF 218
+ + D L YQ LVEVLIP+
Sbjct: 669 KWTKDCDNLLYQGLVEVLIPEVL 691
>gi|432106141|gb|ELK32046.1| MHC class II regulatory factor RFX1 [Myotis davidii]
Length = 1000
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/306 (65%), Positives = 238/306 (77%), Gaps = 8/306 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC------EEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR N + + E EK L K+ L LSK PV
Sbjct: 603 EAIVDVMVNLQFTLVETLWKTFWRYNLNQSSEAPPLAVHDEAEKRLPKASLVLLSKFEPV 662
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 663 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 722
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 723 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 782
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 783 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSTGFPKAAKLFLLKWSFY 842
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 843 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFPNLAT 900
Query: 510 SQNPMD 515
S NP+D
Sbjct: 901 SLNPLD 906
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 107/204 (52%), Gaps = 17/204 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDEN-----GSPRGKKYKLV---KTDSNSNQYGSEGH 80
GNSKYHYYG+R+K SPL + + D+ G P +K +L K + +N
Sbjct: 486 GNSKYHYYGLRIKASSPLLRL-MEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGPQ 544
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
G S+ S Q + D S ++PDF E+D+ LPE D+ F+ +YREHC
Sbjct: 545 QATGL--SDISAQVQQYQQFLDASRSLPDFSELDIQGKVLPEGIGPGDIKAFQVLYREHC 602
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC------EEEKYLSKSKLFCLSKCVPV 194
EA +D +V L F+ +E+LW+ FWR N + + E EK L K+ L LSK PV
Sbjct: 603 EAIVDVMVNLQFTLVETLWKTFWRYNLNQSSEAPPLAVHDEAEKRLPKASLVLLSKFEPV 662
Query: 195 QAFVRRVDFLFYQNLVEVLIPDAF 218
+ + D + YQ LVE+LIPD
Sbjct: 663 LQWTKHCDNVLYQGLVEILIPDVL 686
>gi|183986731|ref|NP_001116955.1| DNA-binding protein RFX2 [Xenopus (Silurana) tropicalis]
gi|254797632|sp|B1WAV2.1|RFX2_XENTR RecName: Full=DNA-binding protein RFX2; AltName: Full=Regulatory
factor X 2
gi|171846772|gb|AAI61512.1| rfx2 protein [Xenopus (Silurana) tropicalis]
Length = 694
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/291 (68%), Positives = 233/291 (80%), Gaps = 6/291 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQ----DNNN--GDECEEEKYLSKSKLFCLSKCVPV 269
+A +D ++ L F IE LW+ FW S+ D +N E E+E + K KL L K P+
Sbjct: 353 EATIDVVMNLQFQYIEKLWQAFWNSKPSSPDGSNPMNSEDEQEPIIPKDKLMVLCKYEPI 412
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++++
Sbjct: 413 MRWMRNCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMCDFPQQIVHA 472
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVCQC
Sbjct: 473 KVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQC 532
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFKLTLQQQ+SL++WANWL NVV VLKP EG P+F KAARQFLLKWSFY
Sbjct: 533 EEGMVQKLEQDFKLTLQQQSSLDQWANWLDNVVTQVLKPHEGSPSFPKAARQFLLKWSFY 592
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 593 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMG 643
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 115/231 (49%), Gaps = 29/231 (12%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRG 60
GNSKYHYYGIR+KPDSPLN + Y IR +P + P
Sbjct: 236 GNSKYHYYGIRLKPDSPLNRL--------QEDTQYMAIRQQPIH-------QKQRYRPAQ 280
Query: 61 KKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCL 120
K + + +NS+Q+ S + A QS +H D ++ PDFPE DL L
Sbjct: 281 KMDGMGENTANSSQHTSPEQSVAA--------QSQHHQQFIDTAHVFPDFPEPDLGNVLL 332
Query: 121 PEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQ----DNNN--GDEC 174
PE T+ D+ + +YR HCEA +D ++ L F IE LW+ FW S+ D +N E
Sbjct: 333 PEGITMTDIKNLQLMYRRHCEATIDVVMNLQFQYIEKLWQAFWNSKPSSPDGSNPMNSED 392
Query: 175 EEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
E+E + K KL L K P+ ++R D + YQ LVE+LIPD TL
Sbjct: 393 EQEPIIPKDKLMVLCKYEPIMRWMRNCDHILYQALVEILIPDVLRPVPSTL 443
>gi|348530730|ref|XP_003452863.1| PREDICTED: MHC class II regulatory factor RFX1-like [Oreochromis
niloticus]
Length = 906
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/290 (68%), Positives = 228/290 (78%), Gaps = 5/290 (1%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC-----EEEKYLSKSKLFCLSKCVPVQ 270
+A LD +V L F+ +E+LW+ FWR + GD E EK L KS L L K PV
Sbjct: 548 EAILDVMVNLQFTLVETLWKTFWRFSQSQAGDATLAVHDESEKRLPKSCLVLLCKYEPVL 607
Query: 271 AFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIK 330
+ R D YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLTNAM P+EM+ IK
Sbjct: 608 RWSRDCDNSLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTNAMMNIPEEMVRIK 667
Query: 331 VTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD 390
VT+ AFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C+
Sbjct: 668 VTSANAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRCE 727
Query: 391 ASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYS 450
+VQ+LE DFKLTLQQQNSLE+WA WL VV+ VLKP++ P F KAA+ FLLKWSFYS
Sbjct: 728 DRVVQRLEQDFKLTLQQQNSLEQWAAWLDGVVSQVLKPYQHSPAFPKAAKLFLLKWSFYS 787
Query: 451 SMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
SMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G
Sbjct: 788 SMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG 837
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 103/213 (48%), Gaps = 30/213 (14%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
GNSKYHYYG+R+K S L + ++ + R + + + Q H G TN
Sbjct: 425 GNSKYHYYGLRIKAGSSLLRLMEDQQHLAMRQQPF-------SQKQRLKPVHKVEGMTNG 477
Query: 89 NP------------------SPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVD 130
S Q + D S A+P+FPEIDL LPE +E +
Sbjct: 478 TAAGAGQQQQQQQGSGHVDISTQVQQYQQFLDASRALPEFPEIDLQGKSLPEGIELEHIK 537
Query: 131 TFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC-----EEEKYLSKSKL 185
+F+ +YREHCEA LD +V L F+ +E+LW+ FWR + GD E EK L KS L
Sbjct: 538 SFQLLYREHCEAILDVMVNLQFTLVETLWKTFWRFSQSQAGDATLAVHDESEKRLPKSCL 597
Query: 186 FCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
L K PV + R D YQ LVE+LIPD
Sbjct: 598 VLLCKYEPVLRWSRDCDNSLYQGLVEILIPDVL 630
>gi|440901083|gb|ELR52082.1| DNA-binding protein RFX2 [Bos grunniens mutus]
Length = 721
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/292 (68%), Positives = 230/292 (78%), Gaps = 7/292 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNG-------DECEEEKYLSKSKLFCLSKCVP 268
+A LD ++ L F IE LW FW S+ +++G DE E L K KL L KC P
Sbjct: 383 EATLDVVMNLQFHYIEKLWLSFWNSKSSSDGPTSLPASDEEPEGAVLPKDKLVSLCKCDP 442
Query: 269 VQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMIN 328
V ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 443 VLRWMRTCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVIQ 502
Query: 329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQ 388
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVCQ
Sbjct: 503 TKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQ 562
Query: 389 CDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSF 448
C+ +VQ+LE DFKLTLQQQ+SL++WA+WL NVV VLK G P+F KAARQFLLKWSF
Sbjct: 563 CEEGVVQRLEQDFKLTLQQQSSLDQWASWLDNVVTQVLKQHAGSPSFPKAARQFLLKWSF 622
Query: 449 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 623 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 674
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 110/212 (51%), Gaps = 18/212 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLVKTDSNSNQYGSEG--H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ + + + GS H
Sbjct: 266 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPVHQKPRYRPAQKTDSLGESGSHSSLH 325
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T Q + QS +H D S+ P+FP DL L E T+ DV + YR HC
Sbjct: 326 STPEQAMAA---QSQHHQQYIDVSHVFPEFPAPDLGSILLQESITLHDVKALQLAYRRHC 382
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNNG-------DECEEEKYLSKSKLFCLSKCVP 193
EA LD ++ L F IE LW FW S+ +++G DE E L K KL L KC P
Sbjct: 383 EATLDVVMNLQFHYIEKLWLSFWNSKSSSDGPTSLPASDEEPEGAVLPKDKLVSLCKCDP 442
Query: 194 VQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
V ++R D + YQ LVE+LIPD TL
Sbjct: 443 VLRWMRTCDHILYQALVEILIPDVLRPVPSTL 474
>gi|431898044|gb|ELK06751.1| MHC class II regulatory factor RFX1 [Pteropus alecto]
Length = 979
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/306 (65%), Positives = 237/306 (77%), Gaps = 8/306 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC------EEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR + D E EK L K+ L LSK PV
Sbjct: 617 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSDAPPLAVHDEAEKRLPKASLVLLSKFEPV 676
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 677 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMMNIPEEMLRV 736
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 737 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 796
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 797 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSTGFPKAAKLFLLKWSFY 856
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 857 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLAT 914
Query: 510 SQNPMD 515
S NP+D
Sbjct: 915 SLNPLD 920
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 106/204 (51%), Gaps = 17/204 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDEN-----GSPRGKKYKLV---KTDSNSNQYGSEGH 80
GNSKYHYYG+R+K SPL + + D+ G P +K +L K + +N
Sbjct: 500 GNSKYHYYGLRIKASSPLLRL-MEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGPQ 558
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
G S+ S Q + D S ++PDF E+DL LPE D+ F+ +YREHC
Sbjct: 559 QATGL--SDISAQVQQYQQFLDASRSLPDFSELDLQGKVLPEGVEPGDIKAFQVLYREHC 616
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC------EEEKYLSKSKLFCLSKCVPV 194
EA +D +V L F+ +E+LW+ FWR + D E EK L K+ L LSK PV
Sbjct: 617 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSDAPPLAVHDEAEKRLPKASLVLLSKFEPV 676
Query: 195 QAFVRRVDFLFYQNLVEVLIPDAF 218
+ + D + YQ LVE+LIPD
Sbjct: 677 LQWTKHCDNVLYQGLVEILIPDVL 700
>gi|410902342|ref|XP_003964653.1| PREDICTED: MHC class II regulatory factor RFX1-like [Takifugu
rubripes]
Length = 903
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/290 (68%), Positives = 228/290 (78%), Gaps = 5/290 (1%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC-----EEEKYLSKSKLFCLSKCVPVQ 270
+A LD +V L F+ +E+LW+ FWR + GD E EK L KS L L K PV
Sbjct: 545 EAILDVMVNLQFTLVETLWKTFWRFSQSQAGDATLAVHDESEKRLPKSCLVLLCKYEPVL 604
Query: 271 AFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIK 330
+ R D YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLTNAM P+EM+ IK
Sbjct: 605 RWSRDCDNSLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTNAMMNIPEEMVRIK 664
Query: 331 VTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD 390
VT+ AFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C+
Sbjct: 665 VTSANAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRCE 724
Query: 391 ASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYS 450
+VQ+LE DFKLTLQQQNSLE+WA WL VV+ VLKP++ P F KAA+ FLLKWSFYS
Sbjct: 725 DRVVQRLEQDFKLTLQQQNSLEQWAAWLDGVVSQVLKPYQHSPAFPKAAKLFLLKWSFYS 784
Query: 451 SMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
SMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G
Sbjct: 785 SMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG 834
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 103/213 (48%), Gaps = 30/213 (14%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
GNSKYHYYG+R+K S L + ++ + R + + + Q H G TN
Sbjct: 422 GNSKYHYYGLRIKAGSSLLRLMEDQQHLAMRQQPF-------SQKQRLKPVHKVEGMTNG 474
Query: 89 NP------------------SPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVD 130
S Q + D S A+P+FP+IDL LP+ +E +
Sbjct: 475 TSAGAGQQQQQQQGSGQVDISTQVQQYQQFLDASRALPEFPDIDLQGKPLPDGVELEHIK 534
Query: 131 TFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC-----EEEKYLSKSKL 185
+F+ +YREHCEA LD +V L F+ +E+LW+ FWR + GD E EK L KS L
Sbjct: 535 SFQVLYREHCEAILDVMVNLQFTLVETLWKTFWRFSQSQAGDATLAVHDESEKRLPKSCL 594
Query: 186 FCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
L K PV + R D YQ LVE+LIPD
Sbjct: 595 VLLCKYEPVLRWSRDCDNSLYQGLVEILIPDVL 627
>gi|73986799|ref|XP_542024.2| PREDICTED: MHC class II regulatory factor RFX1 [Canis lupus
familiaris]
Length = 973
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/306 (65%), Positives = 238/306 (77%), Gaps = 8/306 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR SQ N E EK L K+ L LSK PV
Sbjct: 611 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPNEAPPLAVHDEAEKRLPKASLVLLSKFEPV 670
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 671 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 730
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 731 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 790
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 791 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSAGFPKAAKLFLLKWSFY 850
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 851 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLTT 908
Query: 510 SQNPMD 515
S NP+D
Sbjct: 909 SLNPLD 914
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 107/204 (52%), Gaps = 17/204 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDEN-----GSPRGKKYKLV---KTDSNSNQYGSEGH 80
GNSKYHYYG+R+K SPL + + D+ G P +K +L K + +N
Sbjct: 494 GNSKYHYYGLRIKASSPLLRL-MEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGPQ 552
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
G S+ S Q + D S ++PDF E+DL LPE D+ F+ +YREHC
Sbjct: 553 QATGL--SDISAQVQQYQQFLDASRSLPDFSELDLQGKVLPEGVGPGDIKAFQVLYREHC 610
Query: 141 EAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 194
EA +D +V L F+ +E+LW+ FWR SQ N E EK L K+ L LSK PV
Sbjct: 611 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPNEAPPLAVHDEAEKRLPKASLVLLSKFEPV 670
Query: 195 QAFVRRVDFLFYQNLVEVLIPDAF 218
+ + D + YQ LVE+LIPD
Sbjct: 671 LQWTKHCDNVLYQGLVEILIPDVL 694
>gi|348565207|ref|XP_003468395.1| PREDICTED: MHC class II regulatory factor RFX1-like [Cavia
porcellus]
Length = 977
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/307 (64%), Positives = 238/307 (77%), Gaps = 8/307 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC------EEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWRS + + E EK L K+ L LSK PV
Sbjct: 615 EAIVDVMVNLQFTLVETLWKTFWRSSLSQPSEAPSLAVHDEAEKRLPKASLVLLSKFEPV 674
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 675 LQWTKHCDNVLYQGLVEMLIPDVLRPIPSALTQAIRNFAKSLESWLTHAMMNIPEEMLRV 734
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 735 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 794
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 795 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSSGFPKAAKLFLLKWSFY 854
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 855 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLAT 912
Query: 510 SQNPMDN 516
+ NP+D
Sbjct: 913 ALNPLDT 919
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 108/203 (53%), Gaps = 15/203 (7%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYK-------LVKTDSNSNQYGSEGHT 81
GNSKYHYYG+R+K SPL + ++ + RG+ + + K + +N
Sbjct: 498 GNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGQQQ 557
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
AG S+ S Q + D S ++PDF E+DL LPE + D+ F+ +YREHCE
Sbjct: 558 PAG--LSDISAQVQQYQQFLDASRSLPDFVELDLQGKVLPEGVSPGDIKAFQVLYREHCE 615
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC------EEEKYLSKSKLFCLSKCVPVQ 195
A +D +V L F+ +E+LW+ FWRS + + E EK L K+ L LSK PV
Sbjct: 616 AIVDVMVNLQFTLVETLWKTFWRSSLSQPSEAPSLAVHDEAEKRLPKASLVLLSKFEPVL 675
Query: 196 AFVRRVDFLFYQNLVEVLIPDAF 218
+ + D + YQ LVE+LIPD
Sbjct: 676 QWTKHCDNVLYQGLVEMLIPDVL 698
>gi|321473214|gb|EFX84182.1| hypothetical protein DAPPUDRAFT_47307 [Daphnia pulex]
Length = 613
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 193/290 (66%), Positives = 234/290 (80%), Gaps = 6/290 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN----GDECEEEKYLSKSKLFCLSKCVPVQA 271
+A LDA+++L F+T+E++WR FWRS +NN G E + EK L K+KL+ LS+C PV
Sbjct: 240 EAMLDAVISLQFNTVETIWRHFWRSANNNEAVDVGMEEDPEKILPKAKLYVLSRCEPVLI 299
Query: 272 FVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKV 331
FV++ D+ FYQNLVEVLIPDVL+ IPGS TSSIR+FAK +E+WL AM GCP+++I +KV
Sbjct: 300 FVKKADYQFYQNLVEVLIPDVLKEIPGSFTSSIRSFAKSLENWLLTAMNGCPEDIIIVKV 359
Query: 332 TAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDA 391
AV AF+Q LRRYTSLNHLAQAARAVL N QI QML DLNRVDFHN+QEQ +WVC+CD
Sbjct: 360 AAVNAFSQTLRRYTSLNHLAQAARAVLHNPPQITQMLADLNRVDFHNIQEQGAWVCRCDP 419
Query: 392 SLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPN--FTKAARQFLLKWSFY 449
LV LE+DFK+TL Q +LE+W WL+ VV+ V+KPFE F + ARQFLLKWSFY
Sbjct: 420 DLVAWLENDFKVTLHNQATLEQWVQWLERVVDRVIKPFESGSTQEFVRVARQFLLKWSFY 479
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVI 499
SSMVIRDLTLRSAASFGSFHLIRLLYDEY+FYL+EH+VA+ TGETPIAV+
Sbjct: 480 SSMVIRDLTLRSAASFGSFHLIRLLYDEYIFYLVEHRVAMVTGETPIAVM 529
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/196 (44%), Positives = 129/196 (65%), Gaps = 16/196 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEG--HTTAGQT 86
GNSKYHYYGIRVKP S LN +S E SP V+ S + + G++G H++ G
Sbjct: 136 GNSKYHYYGIRVKPTSSLNQ--MSVEESSPPS-----VQRHSTNGKRGAKGGAHSSGGSM 188
Query: 87 NSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDA 146
++ SP + +LGD + A+P +P+++ + LP+ ++D+ F ++YR+HCEA LDA
Sbjct: 189 DAT-SPT--HQQYLGDAAAALPHWPDLEADRNQLPQGIDVDDLQAFVTLYRDHCEAMLDA 245
Query: 147 IVTLDFSTIESLWREFWRSQDNNN----GDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 202
+++L F+T+E++WR FWRS +NN G E + EK L K+KL+ LS+C PV FV++ D
Sbjct: 246 VISLQFNTVETIWRHFWRSANNNEAVDVGMEEDPEKILPKAKLYVLSRCEPVLIFVKKAD 305
Query: 203 FLFYQNLVEVLIPDAF 218
+ FYQNLVEVLIPD
Sbjct: 306 YQFYQNLVEVLIPDVL 321
>gi|156120991|ref|NP_001095642.1| DNA-binding protein RFX2 [Bos taurus]
gi|254797630|sp|A6QLW9.1|RFX2_BOVIN RecName: Full=DNA-binding protein RFX2; AltName: Full=Regulatory
factor X 2
gi|151553784|gb|AAI48114.1| RFX2 protein [Bos taurus]
gi|296485753|tpg|DAA27868.1| TPA: regulatory factor X2 [Bos taurus]
Length = 707
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/292 (68%), Positives = 230/292 (78%), Gaps = 7/292 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNG-------DECEEEKYLSKSKLFCLSKCVP 268
+A LD ++ L F IE LW FW S+ +++G DE E L K KL L KC P
Sbjct: 383 EATLDVVMNLQFHYIEKLWLSFWNSKSSSDGPTSLPASDEEPEGAVLPKDKLVSLCKCDP 442
Query: 269 VQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMIN 328
V ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 443 VLRWMRTCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVIQ 502
Query: 329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQ 388
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVCQ
Sbjct: 503 TKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQ 562
Query: 389 CDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSF 448
C+ +VQ+LE DFKLTLQQQ+SL++WA+WL NVV VLK G P+F KAARQFLLKWSF
Sbjct: 563 CEEGVVQRLEQDFKLTLQQQSSLDQWASWLDNVVTQVLKQHAGSPSFPKAARQFLLKWSF 622
Query: 449 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 623 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 674
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 110/212 (51%), Gaps = 18/212 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLVKTDSNSNQYGSEG--H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ + + + GS H
Sbjct: 266 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPVHQKPRYRPAQKTDSLGESGSHSSLH 325
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T Q + QS +H D S+ P+FP DL L E T+ DV + YR HC
Sbjct: 326 STPEQAMAA---QSQHHQQYIDVSHVFPEFPAPDLGSVLLQESITLHDVKALQLAYRRHC 382
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNNG-------DECEEEKYLSKSKLFCLSKCVP 193
EA LD ++ L F IE LW FW S+ +++G DE E L K KL L KC P
Sbjct: 383 EATLDVVMNLQFHYIEKLWLSFWNSKSSSDGPTSLPASDEEPEGAVLPKDKLVSLCKCDP 442
Query: 194 VQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
V ++R D + YQ LVE+LIPD TL
Sbjct: 443 VLRWMRTCDHILYQALVEILIPDVLRPVPSTL 474
>gi|157786958|ref|NP_001099414.1| MHC class II regulatory factor RFX1 [Rattus norvegicus]
gi|149037880|gb|EDL92240.1| regulatory factor X, 1 (influences HLA class II expression)
(predicted) [Rattus norvegicus]
Length = 964
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/306 (65%), Positives = 238/306 (77%), Gaps = 8/306 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR SQ N E EK L ++ L LSK PV
Sbjct: 602 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPNEAPPLAVHDEAEKRLPRASLVLLSKFQPV 661
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 662 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 721
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 722 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 781
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 782 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSSGFPKAAKLFLLKWSFY 841
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 842 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLAT 899
Query: 510 SQNPMD 515
S NP+D
Sbjct: 900 SLNPLD 905
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 106/200 (53%), Gaps = 10/200 (5%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKY-KLVKTDSNSNQYGSEGHTTAGQTN 87
GNSKYHYYG+R+K SPL + ++ + RG+ + + + G GQ +
Sbjct: 486 GNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGVANGVAVGQQS 545
Query: 88 ---SNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFL 144
S+ S Q + D S ++PDF E+DL LPE D+ F+ +YREHCEA +
Sbjct: 546 TGLSDISAQVQQYQQFLDASRSLPDFAELDLQGKVLPEGVGPGDIKAFQVLYREHCEAIV 605
Query: 145 DAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPVQAFV 198
D +V L F+ +E+LW+ FWR SQ N E EK L ++ L LSK PV +
Sbjct: 606 DVMVNLQFTLVETLWKTFWRYNLSQPNEAPPLAVHDEAEKRLPRASLVLLSKFQPVLQWT 665
Query: 199 RRVDFLFYQNLVEVLIPDAF 218
+ D + YQ LVE+LIPD
Sbjct: 666 KHCDNVLYQGLVEILIPDVL 685
>gi|348515151|ref|XP_003445103.1| PREDICTED: DNA-binding protein RFX2-like [Oreochromis niloticus]
Length = 736
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/292 (67%), Positives = 231/292 (79%), Gaps = 7/292 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRS----QDNNN---GDECEEEKYLSKSKLFCLSKCVP 268
+A LD ++ L F IE LW+ FW S D + + E E + + KL L K P
Sbjct: 390 EATLDVVMNLQFHYIEKLWQTFWYSTPPPSDGSTTIPSSDDEPEGVIPREKLVALCKYEP 449
Query: 269 VQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMIN 328
V+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQE+I
Sbjct: 450 VRLWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMTSFPQEIIR 509
Query: 329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQ 388
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVCQ
Sbjct: 510 TKVAVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQ 569
Query: 389 CDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSF 448
CD S+VQ+LE DFK+TLQQQ+SL++WA WL NVV+ VLKP +G P+F KAARQFLLKWSF
Sbjct: 570 CDESVVQRLEQDFKVTLQQQSSLDQWATWLDNVVSQVLKPHQGSPSFPKAARQFLLKWSF 629
Query: 449 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 630 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMG 681
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 115/212 (54%), Gaps = 16/212 (7%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQY-GSEGH 80
GNSKYHYYGIRVKPDSPLN + + + R +++K L K DS S+ GS H
Sbjct: 271 GNSKYHYYGIRVKPDSPLNRLQEDTQYMAMRQQPVHQKQRFKPLQKVDSMSDSLCGSSQH 330
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
++ S + QS +H D S+++P FP DL LPE + D+ +++YR+HC
Sbjct: 331 CSSTPEQSVAA-QSQHHQQYIDMSHSLPPFPTPDLGTQPLPERINMNDIKKLQTLYRDHC 389
Query: 141 EAFLDAIVTLDFSTIESLWREFWRS----QDNNN---GDECEEEKYLSKSKLFCLSKCVP 193
EA LD ++ L F IE LW+ FW S D + + E E + + KL L K P
Sbjct: 390 EATLDVVMNLQFHYIEKLWQTFWYSTPPPSDGSTTIPSSDDEPEGVIPREKLVALCKYEP 449
Query: 194 VQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
V+ ++R D + YQ LVE+LIPD TL
Sbjct: 450 VRLWMRSCDHILYQALVEILIPDVLRPVPSTL 481
>gi|348532831|ref|XP_003453909.1| PREDICTED: transcription factor RFX3-like [Oreochromis niloticus]
Length = 759
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/298 (66%), Positives = 227/298 (76%), Gaps = 9/298 (3%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR---------SQDNNNGDECEEEKYLSKSKLFCLSKC 266
+A LD +V L FS IE LW+ FWR + N E E L KS+L L +
Sbjct: 358 EAILDVVVNLQFSLIEKLWQTFWRYSPPDTVEGATVTENSSISEIEARLPKSQLLVLCRN 417
Query: 267 VPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEM 326
V ++ D L YQ LVE+LIPDVLRPIP +LT +IRNFAK +E WLTNAM PQ M
Sbjct: 418 ETVLKWMSTCDHLMYQALVEILIPDVLRPIPSALTQAIRNFAKSLEGWLTNAMNAIPQRM 477
Query: 327 INIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWV 386
I K+ AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWV
Sbjct: 478 IQTKIAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWV 537
Query: 387 CQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKW 446
CQC+ +VQ LE DFK TLQQQ+SLE+WA WL NVV VLKP+E +P+F +AARQFLLKW
Sbjct: 538 CQCEEGMVQHLEQDFKATLQQQSSLEQWAAWLDNVVTQVLKPYEHRPSFPRAARQFLLKW 597
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKES 504
SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPI V+G +S
Sbjct: 598 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIGVMGEFDS 655
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 84/207 (40%), Positives = 108/207 (52%), Gaps = 18/207 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYKLV-KTDSNSNQ-YGSEGH 80
GNSKYHYYGIRVKPDSPLN + + + R +++K V K D S + Y G
Sbjct: 239 GNSKYHYYGIRVKPDSPLNRLQEDMQYMALRQQPVQQKQRFKPVQKFDGGSGENYSGGGQ 298
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
G QS +H D S A+PDF E+DL + E+ + +DV +S+YREHC
Sbjct: 299 HHPGAAEQTVIAQSQHHQQFLDASRALPDFVELDLGQSNT-ENISPDDVKALQSLYREHC 357
Query: 141 EAFLDAIVTLDFSTIESLWREFWR---------SQDNNNGDECEEEKYLSKSKLFCLSKC 191
EA LD +V L FS IE LW+ FWR + N E E L KS+L L +
Sbjct: 358 EAILDVVVNLQFSLIEKLWQTFWRYSPPDTVEGATVTENSSISEIEARLPKSQLLVLCRN 417
Query: 192 VPVQAFVRRVDFLFYQNLVEVLIPDAF 218
V ++ D L YQ LVE+LIPD
Sbjct: 418 ETVLKWMSTCDHLMYQALVEILIPDVL 444
>gi|402904486|ref|XP_003915074.1| PREDICTED: MHC class II regulatory factor RFX1 [Papio anubis]
Length = 979
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/306 (65%), Positives = 238/306 (77%), Gaps = 8/306 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR SQ + E EK L K+ L LSK PV
Sbjct: 617 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPV 676
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 677 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 736
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 737 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 796
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 797 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSAGFPKAAKLFLLKWSFY 856
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 857 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLAT 914
Query: 510 SQNPMD 515
S NP+D
Sbjct: 915 SLNPLD 920
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 108/204 (52%), Gaps = 17/204 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDEN-----GSPRGKKYKLV---KTDSNSNQYGSEGH 80
GNSKYHYYG+R+K SPL + + D+ G P +K +L K + +N
Sbjct: 500 GNSKYHYYGLRIKASSPLLRL-MEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGQQ 558
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+ G S+ S Q + D S ++PDF E+DL LPE D+ F+ +YREHC
Sbjct: 559 PSTG--LSDISAQVQQYQQFLDASRSLPDFTELDLQGKVLPEGVGPGDIKAFQVLYREHC 616
Query: 141 EAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 194
EA +D +V L F+ +E+LW+ FWR SQ + E EK L K+ L LSK PV
Sbjct: 617 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPV 676
Query: 195 QAFVRRVDFLFYQNLVEVLIPDAF 218
+ + D + YQ LVE+LIPD
Sbjct: 677 LQWTKHCDNVLYQGLVEILIPDVL 700
>gi|403302207|ref|XP_003941754.1| PREDICTED: MHC class II regulatory factor RFX1 [Saimiri boliviensis
boliviensis]
Length = 980
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/306 (65%), Positives = 238/306 (77%), Gaps = 8/306 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR SQ + E EK L K+ L LSK PV
Sbjct: 618 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPV 677
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 678 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 737
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 738 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 797
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 798 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSAGFPKAAKLFLLKWSFY 857
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 858 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLAT 915
Query: 510 SQNPMD 515
S NP+D
Sbjct: 916 SLNPLD 921
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 108/204 (52%), Gaps = 17/204 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDEN-----GSPRGKKYKLV---KTDSNSNQYGSEGH 80
GNSKYHYYG+R+K SPL + + D+ G P +K +L K + +N
Sbjct: 501 GNSKYHYYGLRIKASSPLLRL-MEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGQQ 559
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+ G S+ S Q + D S ++PDF E+DL LPE D+ F+ +YREHC
Sbjct: 560 QSTG--LSDISAQVQQYQQFLDASRSLPDFTELDLQGKALPEGVGPGDIKAFQVLYREHC 617
Query: 141 EAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 194
EA +D +V L F+ +E+LW+ FWR SQ + E EK L K+ L LSK PV
Sbjct: 618 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPV 677
Query: 195 QAFVRRVDFLFYQNLVEVLIPDAF 218
+ + D + YQ LVE+LIPD
Sbjct: 678 LQWTKHCDNVLYQGLVEILIPDVL 701
>gi|148222802|ref|NP_001090132.1| DNA-binding protein RFX2 [Xenopus laevis]
gi|123916375|sp|Q32NR3.1|RFX2_XENLA RecName: Full=DNA-binding protein RFX2; AltName: Full=Regulatory
factor X 2
gi|80479255|gb|AAI08518.1| MGC130921 protein [Xenopus laevis]
Length = 694
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/291 (67%), Positives = 231/291 (79%), Gaps = 6/291 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQ----DNNN--GDECEEEKYLSKSKLFCLSKCVPV 269
+A +D ++ L F IE LW+ FW S+ D +N E E+E + KL L K P+
Sbjct: 353 EATIDVVMNLQFQYIEKLWQAFWNSKPSSPDGSNPMSSEDEQEPIIPNEKLMVLCKYEPI 412
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++++
Sbjct: 413 MRWMRNCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMCDFPQQIVHA 472
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVCQC
Sbjct: 473 KVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQC 532
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
D +VQ+LE DFKLTLQQQ+SL++WANWL NVV VLKP EG +F KAARQFLLKWSFY
Sbjct: 533 DEGMVQKLEQDFKLTLQQQSSLDQWANWLDNVVTQVLKPHEGSTSFPKAARQFLLKWSFY 592
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 593 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMG 643
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 113/231 (48%), Gaps = 29/231 (12%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRG 60
GNSKYHYYGIR+KPDSPLN I Y IR +P + P
Sbjct: 236 GNSKYHYYGIRLKPDSPLNRI--------QEDAQYMAIRQQPIH-------QKQRYRPAQ 280
Query: 61 KKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCL 120
K + + +NS+Q+ S + A QS +H D S+ PDFP DL L
Sbjct: 281 KIDGMGENPANSSQHASPEQSVAA--------QSQHHQQFIDTSHVFPDFPAPDLGSLLL 332
Query: 121 PEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQ----DNNN--GDEC 174
PE T+ D+ + +YR HCEA +D ++ L F IE LW+ FW S+ D +N E
Sbjct: 333 PEGITMTDIKNLQLMYRRHCEATIDVVMNLQFQYIEKLWQAFWNSKPSSPDGSNPMSSED 392
Query: 175 EEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
E+E + KL L K P+ ++R D + YQ LVE+LIPD TL
Sbjct: 393 EQEPIIPNEKLMVLCKYEPIMRWMRNCDHILYQALVEILIPDVLRPVPSTL 443
>gi|33568|emb|CAA41730.1| MHC class II regulatory factor RFX [Homo sapiens]
gi|29436363|gb|AAH49826.1| Regulatory factor X, 1 (influences HLA class II expression) [Homo
sapiens]
gi|261858156|dbj|BAI45600.1| regulatory factor X, 1 [synthetic construct]
Length = 979
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/306 (65%), Positives = 238/306 (77%), Gaps = 8/306 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR SQ + E EK L K+ L LSK PV
Sbjct: 617 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPV 676
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 677 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 736
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 737 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 796
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 797 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSAGFPKAAKLFLLKWSFY 856
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 857 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLAT 914
Query: 510 SQNPMD 515
S NP+D
Sbjct: 915 SLNPLD 920
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 108/204 (52%), Gaps = 17/204 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDEN-----GSPRGKKYKLV---KTDSNSNQYGSEGH 80
GNSKYHYYG+R+K SPL + + D+ G P +K +L K + +N
Sbjct: 500 GNSKYHYYGLRIKASSPLLRL-MEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGQQ 558
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+ G S+ S Q + D S ++PDF E+DL LPE D+ F+ +YREHC
Sbjct: 559 PSTG--LSDISAQVQQYQQFLDASRSLPDFTELDLQGKVLPEGVGPGDIKAFQVLYREHC 616
Query: 141 EAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 194
EA +D +V L F+ +E+LW+ FWR SQ + E EK L K+ L LSK PV
Sbjct: 617 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPV 676
Query: 195 QAFVRRVDFLFYQNLVEVLIPDAF 218
+ + D + YQ LVE+LIPD
Sbjct: 677 LQWTKHCDNVLYQGLVEILIPDVL 700
>gi|311248970|ref|XP_003123399.1| PREDICTED: MHC class II regulatory factor RFX1 [Sus scrofa]
Length = 973
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/306 (65%), Positives = 237/306 (77%), Gaps = 8/306 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR------SQDNNNGDECEEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR S+ E EK L K+ L LSK PV
Sbjct: 611 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKASLVLLSKFEPV 670
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 671 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 730
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 731 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 790
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 791 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSAGFPKAAKLFLLKWSFY 850
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 851 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLAT 908
Query: 510 SQNPMD 515
S NP+D
Sbjct: 909 SLNPLD 914
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 105/203 (51%), Gaps = 15/203 (7%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYK-------LVKTDSNSNQYGSEGHT 81
GNSKYHYYG+R+K SPL + ++ + RG+ + + K + +N
Sbjct: 494 GNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGPQQ 553
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
G S+ S Q + D S ++PDF E+DL LPE D+ F+ +YREHCE
Sbjct: 554 ATG--LSDISAQVQQYQQFLDASRSLPDFSELDLQGKVLPEGVGPGDIKAFQVLYREHCE 611
Query: 142 AFLDAIVTLDFSTIESLWREFWR------SQDNNNGDECEEEKYLSKSKLFCLSKCVPVQ 195
A +D +V L F+ +E+LW+ FWR S+ E EK L K+ L LSK PV
Sbjct: 612 AIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKASLVLLSKFEPVL 671
Query: 196 AFVRRVDFLFYQNLVEVLIPDAF 218
+ + D + YQ LVE+LIPD
Sbjct: 672 QWTKHCDNVLYQGLVEILIPDVL 694
>gi|114675711|ref|XP_524133.2| PREDICTED: MHC class II regulatory factor RFX1 [Pan troglodytes]
gi|397487647|ref|XP_003814901.1| PREDICTED: MHC class II regulatory factor RFX1 [Pan paniscus]
Length = 979
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/306 (65%), Positives = 238/306 (77%), Gaps = 8/306 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR SQ + E EK L K+ L LSK PV
Sbjct: 617 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPV 676
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 677 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 736
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 737 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 796
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 797 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSAGFPKAAKLFLLKWSFY 856
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 857 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLAT 914
Query: 510 SQNPMD 515
S NP+D
Sbjct: 915 SLNPLD 920
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 108/204 (52%), Gaps = 17/204 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDEN-----GSPRGKKYKLV---KTDSNSNQYGSEGH 80
GNSKYHYYG+R+K SPL + + D+ G P +K +L K + +N
Sbjct: 500 GNSKYHYYGLRIKASSPLLRL-MEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGQQ 558
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+ G S+ S Q + D S ++PDF E+DL LPE D+ F+ +YREHC
Sbjct: 559 PSTG--LSDISAQVQQYQQFLDASRSLPDFTELDLQGKVLPEGVGPGDIKAFQVLYREHC 616
Query: 141 EAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 194
EA +D +V L F+ +E+LW+ FWR SQ + E EK L K+ L LSK PV
Sbjct: 617 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPV 676
Query: 195 QAFVRRVDFLFYQNLVEVLIPDAF 218
+ + D + YQ LVE+LIPD
Sbjct: 677 LQWTKHCDNVLYQGLVEILIPDVL 700
>gi|426387475|ref|XP_004060192.1| PREDICTED: MHC class II regulatory factor RFX1 [Gorilla gorilla
gorilla]
Length = 979
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/306 (65%), Positives = 238/306 (77%), Gaps = 8/306 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR SQ + E EK L K+ L LSK PV
Sbjct: 617 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPV 676
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 677 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 736
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 737 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 796
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 797 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSAGFPKAAKLFLLKWSFY 856
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 857 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLAT 914
Query: 510 SQNPMD 515
S NP+D
Sbjct: 915 SLNPLD 920
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 108/204 (52%), Gaps = 17/204 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDEN-----GSPRGKKYKLV---KTDSNSNQYGSEGH 80
GNSKYHYYG+R+K SPL + + D+ G P +K +L K + +N
Sbjct: 500 GNSKYHYYGLRIKASSPLLRL-MEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGQQ 558
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+ G S+ S Q + D S ++PDF E+DL LPE D+ F+ +YREHC
Sbjct: 559 PSTG--LSDISAQVQQYQQFLDASRSLPDFTELDLQGKVLPEGVRPGDIKAFQVLYREHC 616
Query: 141 EAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 194
EA +D +V L F+ +E+LW+ FWR SQ + E EK L K+ L LSK PV
Sbjct: 617 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPV 676
Query: 195 QAFVRRVDFLFYQNLVEVLIPDAF 218
+ + D + YQ LVE+LIPD
Sbjct: 677 LQWTKHCDNVLYQGLVEILIPDVL 700
>gi|332253042|ref|XP_003275661.1| PREDICTED: MHC class II regulatory factor RFX1 [Nomascus
leucogenys]
Length = 979
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/306 (65%), Positives = 238/306 (77%), Gaps = 8/306 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR SQ + E EK L K+ L LSK PV
Sbjct: 617 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPV 676
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 677 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 736
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 737 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 796
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 797 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSAGFPKAAKLFLLKWSFY 856
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 857 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLAT 914
Query: 510 SQNPMD 515
S NP+D
Sbjct: 915 SLNPLD 920
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 108/204 (52%), Gaps = 17/204 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDEN-----GSPRGKKYKLV---KTDSNSNQYGSEGH 80
GNSKYHYYG+R+K SPL + + D+ G P +K +L K + +N
Sbjct: 500 GNSKYHYYGLRIKASSPLLRL-MEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGQQ 558
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+ G S+ S Q + D S ++PDF E+DL LPE D+ F+ +YREHC
Sbjct: 559 PSTG--LSDISAQVQQYQQFLDASRSLPDFTELDLQGKVLPEGVGPGDIKAFQVLYREHC 616
Query: 141 EAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 194
EA +D +V L F+ +E+LW+ FWR SQ + E EK L K+ L LSK PV
Sbjct: 617 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPV 676
Query: 195 QAFVRRVDFLFYQNLVEVLIPDAF 218
+ + D + YQ LVE+LIPD
Sbjct: 677 LQWTKHCDNVLYQGLVEILIPDVL 700
>gi|238859557|ref|NP_002909.4| MHC class II regulatory factor RFX1 [Homo sapiens]
gi|288558824|sp|P22670.2|RFX1_HUMAN RecName: Full=MHC class II regulatory factor RFX1; AltName:
Full=Enhancer factor C; Short=EF-C; AltName:
Full=Regulatory factor X 1; Short=RFX; AltName:
Full=Transcription factor RFX1
gi|119604793|gb|EAW84387.1| regulatory factor X, 1 (influences HLA class II expression) [Homo
sapiens]
Length = 979
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/306 (65%), Positives = 238/306 (77%), Gaps = 8/306 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR SQ + E EK L K+ L LSK PV
Sbjct: 617 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPV 676
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 677 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 736
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 737 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 796
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 797 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSAGFPKAAKLFLLKWSFY 856
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 857 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLAT 914
Query: 510 SQNPMD 515
S NP+D
Sbjct: 915 SLNPLD 920
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 108/204 (52%), Gaps = 17/204 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDEN-----GSPRGKKYKLV---KTDSNSNQYGSEGH 80
GNSKYHYYG+R+K SPL + + D+ G P +K +L K + +N
Sbjct: 500 GNSKYHYYGLRIKASSPLLRL-MEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGQQ 558
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+ G S+ S Q + D S ++PDF E+DL LPE D+ F+ +YREHC
Sbjct: 559 PSTG--LSDISAQVQQYQQFLDASRSLPDFTELDLQGKVLPEGVGPGDIKAFQVLYREHC 616
Query: 141 EAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 194
EA +D +V L F+ +E+LW+ FWR SQ + E EK L K+ L LSK PV
Sbjct: 617 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPV 676
Query: 195 QAFVRRVDFLFYQNLVEVLIPDAF 218
+ + D + YQ LVE+LIPD
Sbjct: 677 LQWTKHCDNVLYQGLVEILIPDVL 700
>gi|410950632|ref|XP_004001663.1| PREDICTED: LOW QUALITY PROTEIN: MHC class II regulatory factor RFX1
[Felis catus]
Length = 910
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/296 (66%), Positives = 232/296 (78%), Gaps = 6/296 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR SQ N E EK L K+ L LSK PV
Sbjct: 550 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPNEAPPLAVHDEAEKRLPKASLVLLSKFEPV 609
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 610 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 669
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 670 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 729
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 730 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSAGFPKAAKLFLLKWSFY 789
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESN 505
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G+ +
Sbjct: 790 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMGAAATR 845
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 107/203 (52%), Gaps = 15/203 (7%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYK-------LVKTDSNSNQYGSEGHT 81
GNSKYHYYG+R+K SPL + ++ + RG+ + L K + +N
Sbjct: 433 GNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPLQKMEGMTNGVAVGPQQ 492
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
AG S+ S Q + D S ++PDF E+DL LPE D+ F+ +YREHCE
Sbjct: 493 AAGL--SDISAQVQQYQQFLDASRSLPDFSELDLQGKVLPEGVGPGDIKAFQVLYREHCE 550
Query: 142 AFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPVQ 195
A +D +V L F+ +E+LW+ FWR SQ N E EK L K+ L LSK PV
Sbjct: 551 AIVDVMVNLQFTLVETLWKTFWRYNLSQPNEAPPLAVHDEAEKRLPKASLVLLSKFEPVL 610
Query: 196 AFVRRVDFLFYQNLVEVLIPDAF 218
+ + D + YQ LVE+LIPD
Sbjct: 611 QWTKHCDNVLYQGLVEILIPDVL 633
>gi|47212749|emb|CAF90595.1| unnamed protein product [Tetraodon nigroviridis]
Length = 772
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/290 (68%), Positives = 228/290 (78%), Gaps = 5/290 (1%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC-----EEEKYLSKSKLFCLSKCVPVQ 270
+A LD +V L F+ +E+LW+ FWR + GD E EK L KS L L K PV
Sbjct: 421 EAILDVMVNLQFTLVETLWKTFWRFSQSQAGDATLAVHDESEKRLPKSCLVLLCKYEPVL 480
Query: 271 AFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIK 330
+ R D YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLTNAM P+EM+ IK
Sbjct: 481 RWSRDCDNSLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTNAMMNIPEEMVRIK 540
Query: 331 VTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD 390
VT+ AFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C+
Sbjct: 541 VTSANAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRCE 600
Query: 391 ASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYS 450
+VQ+LE DFKLTLQQQNSLE+WA WL VV+ VLKP++ P F KAA+ FLLKWSFYS
Sbjct: 601 DRVVQRLEQDFKLTLQQQNSLEQWAAWLDGVVSQVLKPYQHSPAFPKAAKLFLLKWSFYS 660
Query: 451 SMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
SMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G
Sbjct: 661 SMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG 710
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 103/213 (48%), Gaps = 30/213 (14%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
GNSKYHYYG+R+K S L + ++ + R + + + Q H G TN
Sbjct: 298 GNSKYHYYGLRIKAGSSLLRLMEDQQHLAMRQQPF-------SQKQRLKPVHKVEGMTNG 350
Query: 89 NP------------------SPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVD 130
S Q + D S A+P+FP+IDL LP+ +E +
Sbjct: 351 TAAGAGQQQQQQQGSGQVDISTQVQQYQQFLDASRALPEFPDIDLQGKPLPDGVELEHIK 410
Query: 131 TFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC-----EEEKYLSKSKL 185
+F+ +YREHCEA LD +V L F+ +E+LW+ FWR + GD E EK L KS L
Sbjct: 411 SFQVLYREHCEAILDVMVNLQFTLVETLWKTFWRFSQSQAGDATLAVHDESEKRLPKSCL 470
Query: 186 FCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
L K PV + R D YQ LVE+LIPD
Sbjct: 471 VLLCKYEPVLRWSRDCDNSLYQGLVEILIPDVL 503
>gi|226958468|ref|NP_082063.1| DNA-binding protein RFX2 isoform 1 [Mus musculus]
gi|254763326|sp|P48379.2|RFX2_MOUSE RecName: Full=DNA-binding protein RFX2; AltName: Full=Regulatory
factor X 2
gi|26336468|dbj|BAC31919.1| unnamed protein product [Mus musculus]
Length = 717
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/293 (67%), Positives = 227/293 (77%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A LD ++ L F IE LW FW + ++ DE E L K KL L KC
Sbjct: 373 EATLDVVMNLQFQYIEKLWLSFWNCKATSSDSCASLPASDEDPEVTLLPKEKLISLCKCE 432
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE LIPDVLRP+P SLT +IRNFAK +E WL NAM G PQ++I
Sbjct: 433 PILQWMRSCDHILYQTLVETLIPDVLRPVPSSLTQAIRNFAKSLEGWLINAMSGFPQQVI 492
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 493 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 552
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ SLVQ+LE DFK+TLQQQ+SL++WA+WL NVV VLK G P+F KAARQFLLKWS
Sbjct: 553 QCEESLVQRLEHDFKVTLQQQSSLDQWASWLDNVVTQVLKQHSGSPSFPKAARQFLLKWS 612
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 613 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMG 665
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 104/205 (50%), Gaps = 17/205 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLV-KTDSNSNQYGSEGHT 81
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ K+DS + GS
Sbjct: 256 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPTHQKPRYRPAQKSDSLGD--GSAHSN 313
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
G + + Q +H D S+ P+FP DL L E T+ DV + +YR HCE
Sbjct: 314 MHGMPDQAMATQGQHHQQYIDVSHVFPEFPAPDLGSTLLQESVTLHDVKALQLVYRRHCE 373
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCVP 193
A LD ++ L F IE LW FW + ++ DE E L K KL L KC P
Sbjct: 374 ATLDVVMNLQFQYIEKLWLSFWNCKATSSDSCASLPASDEDPEVTLLPKEKLISLCKCEP 433
Query: 194 VQAFVRRVDFLFYQNLVEVLIPDAF 218
+ ++R D + YQ LVE LIPD
Sbjct: 434 ILQWMRSCDHILYQTLVETLIPDVL 458
>gi|354479569|ref|XP_003501982.1| PREDICTED: MHC class II regulatory factor RFX1 [Cricetulus griseus]
Length = 965
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/305 (65%), Positives = 237/305 (77%), Gaps = 8/305 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR SQ N E EK L ++ L LSK PV
Sbjct: 603 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPNEAAPLAVHDEGEKRLPRASLVLLSKFQPV 662
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 663 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 722
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 723 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 782
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 783 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSSGFPKAAKLFLLKWSFY 842
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 843 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLTT 900
Query: 510 SQNPM 514
S NP+
Sbjct: 901 SLNPL 905
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 106/200 (53%), Gaps = 10/200 (5%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKY-KLVKTDSNSNQYGSEGHTTAGQTN 87
GNSKYHYYG+R+K SPL + ++ + RG+ + + + G GQ +
Sbjct: 487 GNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGVANGVAVGQQS 546
Query: 88 ---SNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFL 144
S+ S Q + D S ++PDF E+DL LPE DV F+ +YREHCEA +
Sbjct: 547 TGLSDISAQVQQYQQFLDASRSLPDFVELDLQGKVLPEGVGPGDVKAFQVLYREHCEAIV 606
Query: 145 DAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPVQAFV 198
D +V L F+ +E+LW+ FWR SQ N E EK L ++ L LSK PV +
Sbjct: 607 DVMVNLQFTLVETLWKTFWRYNLSQPNEAAPLAVHDEGEKRLPRASLVLLSKFQPVLQWT 666
Query: 199 RRVDFLFYQNLVEVLIPDAF 218
+ D + YQ LVE+LIPD
Sbjct: 667 KHCDNVLYQGLVEILIPDVL 686
>gi|6677731|ref|NP_033082.1| DNA-binding protein RFX2 isoform 2 [Mus musculus]
gi|452420|emb|CAA53703.1| DNA binding protein RFX2 [Mus musculus]
gi|13435554|gb|AAH04654.1| Regulatory factor X, 2 (influences HLA class II expression) [Mus
musculus]
gi|148706259|gb|EDL38206.1| regulatory factor X, 2 (influences HLA class II expression),
isoform CRA_b [Mus musculus]
Length = 692
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/293 (67%), Positives = 227/293 (77%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A LD ++ L F IE LW FW + ++ DE E L K KL L KC
Sbjct: 348 EATLDVVMNLQFQYIEKLWLSFWNCKATSSDSCASLPASDEDPEVTLLPKEKLISLCKCE 407
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE LIPDVLRP+P SLT +IRNFAK +E WL NAM G PQ++I
Sbjct: 408 PILQWMRSCDHILYQTLVETLIPDVLRPVPSSLTQAIRNFAKSLEGWLINAMSGFPQQVI 467
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 468 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 527
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ SLVQ+LE DFK+TLQQQ+SL++WA+WL NVV VLK G P+F KAARQFLLKWS
Sbjct: 528 QCEESLVQRLEHDFKVTLQQQSSLDQWASWLDNVVTQVLKQHSGSPSFPKAARQFLLKWS 587
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 588 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMG 640
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 104/205 (50%), Gaps = 17/205 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLV-KTDSNSNQYGSEGHT 81
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ K+DS + GS
Sbjct: 231 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPTHQKPRYRPAQKSDSLGD--GSAHSN 288
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
G + + Q +H D S+ P+FP DL L E T+ DV + +YR HCE
Sbjct: 289 MHGMPDQAMATQGQHHQQYIDVSHVFPEFPAPDLGSTLLQESVTLHDVKALQLVYRRHCE 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCVP 193
A LD ++ L F IE LW FW + ++ DE E L K KL L KC P
Sbjct: 349 ATLDVVMNLQFQYIEKLWLSFWNCKATSSDSCASLPASDEDPEVTLLPKEKLISLCKCEP 408
Query: 194 VQAFVRRVDFLFYQNLVEVLIPDAF 218
+ ++R D + YQ LVE LIPD
Sbjct: 409 ILQWMRSCDHILYQTLVETLIPDVL 433
>gi|452418|emb|CAA53702.1| DNA binding protein RFX1 [Mus musculus]
Length = 963
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/306 (64%), Positives = 237/306 (77%), Gaps = 8/306 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR------SQDNNNGDECEEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR S+ E EK L ++ L LSK PV
Sbjct: 601 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPRASLVLLSKFQPV 660
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 661 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 720
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 721 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 780
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 781 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSSGFPKAAKLFLLKWSFY 840
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 841 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLAT 898
Query: 510 SQNPMD 515
S NP+D
Sbjct: 899 SLNPLD 904
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 105/200 (52%), Gaps = 10/200 (5%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKY-KLVKTDSNSNQYGSEGHTTAGQTN 87
GNSKYHYYG+R+K SPL + ++ + RG+ + + + G GQ +
Sbjct: 485 GNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGVANGVAVGQQS 544
Query: 88 ---SNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFL 144
S+ S Q + D S ++PDF E+DL LPE D+ F+ +YREHCEA +
Sbjct: 545 TGLSDISAQVQQYQQFLDASRSLPDFAELDLQGKVLPEGVGPGDIKAFQVLYREHCEAIV 604
Query: 145 DAIVTLDFSTIESLWREFWR------SQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFV 198
D +V L F+ +E+LW+ FWR S+ E EK L ++ L LSK PV +
Sbjct: 605 DVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPRASLVLLSKFQPVLQWT 664
Query: 199 RRVDFLFYQNLVEVLIPDAF 218
+ D + YQ LVE+LIPD
Sbjct: 665 KHCDNVLYQGLVEILIPDVL 684
>gi|239916007|ref|NP_033081.3| MHC class II regulatory factor RFX1 [Mus musculus]
gi|341941965|sp|P48377.2|RFX1_MOUSE RecName: Full=MHC class II regulatory factor RFX1; AltName:
Full=Regulatory factor X 1; AltName: Full=Transcription
factor RFX1
gi|34784952|gb|AAH57018.1| Regulatory factor X, 1 (influences HLA class II expression) [Mus
musculus]
gi|148678983|gb|EDL10930.1| regulatory factor X, 1 (influences HLA class II expression) [Mus
musculus]
Length = 963
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/306 (64%), Positives = 237/306 (77%), Gaps = 8/306 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR------SQDNNNGDECEEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR S+ E EK L ++ L LSK PV
Sbjct: 601 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPRASLVLLSKFQPV 660
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 661 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 720
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 721 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 780
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 781 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSSGFPKAAKLFLLKWSFY 840
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 841 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLAT 898
Query: 510 SQNPMD 515
S NP+D
Sbjct: 899 SLNPLD 904
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 105/200 (52%), Gaps = 10/200 (5%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKY-KLVKTDSNSNQYGSEGHTTAGQTN 87
GNSKYHYYG+R+K SPL + ++ + RG+ + + + G GQ +
Sbjct: 485 GNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGVANGVAVGQQS 544
Query: 88 ---SNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFL 144
S+ S Q + D S ++PDF E+DL LPE D+ F+ +YREHCEA +
Sbjct: 545 TGLSDISAQVQQYQQFLDASRSLPDFAELDLQGKVLPEGVGPGDIKAFQVLYREHCEAIV 604
Query: 145 DAIVTLDFSTIESLWREFWR------SQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFV 198
D +V L F+ +E+LW+ FWR S+ E EK L ++ L LSK PV +
Sbjct: 605 DVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPRASLVLLSKFQPVLQWT 664
Query: 199 RRVDFLFYQNLVEVLIPDAF 218
+ D + YQ LVE+LIPD
Sbjct: 665 KHCDNVLYQGLVEILIPDVL 684
>gi|73987045|ref|XP_868416.1| PREDICTED: DNA-binding protein RFX2 isoform 4 [Canis lupus
familiaris]
Length = 702
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/293 (67%), Positives = 229/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A LD +V L F IE LW FW S+ ++ D E L K KL L KC
Sbjct: 358 EATLDVVVNLQFHYIEKLWLSFWNSKASSGDGPASLPASDGEPEGAVLPKDKLVSLCKCE 417
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM+ PQ++I
Sbjct: 418 PILKWMRNCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMRDFPQQVI 477
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 478 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 537
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL NVV VLK G P+F KAARQFLLKWS
Sbjct: 538 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDNVVTQVLKQHAGSPSFPKAARQFLLKWS 597
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 598 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 650
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 108/213 (50%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLVKTDSNSNQYGSEG--H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ + + GS G H
Sbjct: 241 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHGSLH 300
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T Q + QS +H D S+ P+FP DL L E T+ DV + +YR HC
Sbjct: 301 STPEQAMAA---QSQHHQQYIDVSHVFPEFPAPDLGSVLLQESITLHDVKALQLVYRRHC 357
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA LD +V L F IE LW FW S+ ++ D E L K KL L KC
Sbjct: 358 EATLDVVVNLQFHYIEKLWLSFWNSKASSGDGPASLPASDGEPEGAVLPKDKLVSLCKCE 417
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 418 PILKWMRNCDHILYQALVEILIPDVLRPVPSTL 450
>gi|345786691|ref|XP_003432842.1| PREDICTED: DNA-binding protein RFX2 [Canis lupus familiaris]
Length = 727
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/293 (67%), Positives = 229/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A LD +V L F IE LW FW S+ ++ D E L K KL L KC
Sbjct: 383 EATLDVVVNLQFHYIEKLWLSFWNSKASSGDGPASLPASDGEPEGAVLPKDKLVSLCKCE 442
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM+ PQ++I
Sbjct: 443 PILKWMRNCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMRDFPQQVI 502
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 503 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 562
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL NVV VLK G P+F KAARQFLLKWS
Sbjct: 563 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDNVVTQVLKQHAGSPSFPKAARQFLLKWS 622
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 623 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 675
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 108/213 (50%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLVKTDSNSNQYGSEG--H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ + + GS G H
Sbjct: 266 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHGSLH 325
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T Q + QS +H D S+ P+FP DL L E T+ DV + +YR HC
Sbjct: 326 STPEQAMAA---QSQHHQQYIDVSHVFPEFPAPDLGSVLLQESITLHDVKALQLVYRRHC 382
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA LD +V L F IE LW FW S+ ++ D E L K KL L KC
Sbjct: 383 EATLDVVVNLQFHYIEKLWLSFWNSKASSGDGPASLPASDGEPEGAVLPKDKLVSLCKCE 442
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 443 PILKWMRNCDHILYQALVEILIPDVLRPVPSTL 475
>gi|344244537|gb|EGW00641.1| MHC class II regulatory factor RFX1 [Cricetulus griseus]
Length = 863
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/305 (65%), Positives = 237/305 (77%), Gaps = 8/305 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR SQ N E EK L ++ L LSK PV
Sbjct: 501 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPNEAAPLAVHDEGEKRLPRASLVLLSKFQPV 560
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 561 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 620
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 621 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 680
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 681 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSSGFPKAAKLFLLKWSFY 740
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 741 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLTT 798
Query: 510 SQNPM 514
S NP+
Sbjct: 799 SLNPL 803
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 106/200 (53%), Gaps = 10/200 (5%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKY-KLVKTDSNSNQYGSEGHTTAGQTN 87
GNSKYHYYG+R+K SPL + ++ + RG+ + + + G GQ +
Sbjct: 385 GNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGVANGVAVGQQS 444
Query: 88 ---SNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFL 144
S+ S Q + D S ++PDF E+DL LPE DV F+ +YREHCEA +
Sbjct: 445 TGLSDISAQVQQYQQFLDASRSLPDFVELDLQGKVLPEGVGPGDVKAFQVLYREHCEAIV 504
Query: 145 DAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPVQAFV 198
D +V L F+ +E+LW+ FWR SQ N E EK L ++ L LSK PV +
Sbjct: 505 DVMVNLQFTLVETLWKTFWRYNLSQPNEAAPLAVHDEGEKRLPRASLVLLSKFQPVLQWT 564
Query: 199 RRVDFLFYQNLVEVLIPDAF 218
+ D + YQ LVE+LIPD
Sbjct: 565 KHCDNVLYQGLVEILIPDVL 584
>gi|148234647|ref|NP_001083022.1| MHC class II regulatory factor RFX1 [Danio rerio]
gi|141795697|gb|AAI39665.1| Zgc:162914 protein [Danio rerio]
Length = 897
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/306 (65%), Positives = 233/306 (76%), Gaps = 8/306 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC------EEEKYLSKSKLFCLSKCVPV 269
+A LD +V L F +E+LW+ FWR +N GD E EK L K+ L L K PV
Sbjct: 538 EAILDVMVNLQFPLVETLWKTFWRFSENQAGDSATLAVHDESEKRLPKTCLVILCKYEPV 597
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ R D YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLTNAM P+EM+ +
Sbjct: 598 LRWSRDCDNTLYQGLVEMLIPDVLRPIPSALTQAIRNFAKSLESWLTNAMVNIPEEMVRV 657
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KVT+ AFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 658 KVTSASAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 717
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFKLTLQQQNSLE+WA WL VV+ VLKP++ KAA+ FLLKWSFY
Sbjct: 718 EDRVVQRLEQDFKLTLQQQNSLEQWAAWLDGVVSQVLKPYQSSAALPKAAKLFLLKWSFY 777
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E +
Sbjct: 778 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFASLGR 835
Query: 510 SQNPMD 515
S NP+D
Sbjct: 836 SLNPLD 841
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 105/207 (50%), Gaps = 17/207 (8%)
Query: 29 GNSKYHYYGIRVKPDSPL-------NNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHT 81
GNSK HYYG+R+K S L ++ + + S + + + K + +N S
Sbjct: 415 GNSKCHYYGLRIKASSSLLRLMEDQQHLAMRQQPFSQKQRLKPVQKVEGITNGMSSGSGQ 474
Query: 82 TAGQTN----SNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYR 137
Q S+ S Q + D S A+P+FP++DL LPE +E + +F+ +YR
Sbjct: 475 QQQQQQSSGLSDISTQVQQYQQFLDASKALPEFPDVDLQGKALPEGIELEHLKSFQLLYR 534
Query: 138 EHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC------EEEKYLSKSKLFCLSKC 191
EHCEA LD +V L F +E+LW+ FWR +N GD E EK L K+ L L K
Sbjct: 535 EHCEAILDVMVNLQFPLVETLWKTFWRFSENQAGDSATLAVHDESEKRLPKTCLVILCKY 594
Query: 192 VPVQAFVRRVDFLFYQNLVEVLIPDAF 218
PV + R D YQ LVE+LIPD
Sbjct: 595 EPVLRWSRDCDNTLYQGLVEMLIPDVL 621
>gi|157822591|ref|NP_001100347.1| DNA-binding protein RFX2 [Rattus norvegicus]
gi|254797631|sp|B2GV50.1|RFX2_RAT RecName: Full=DNA-binding protein RFX2; AltName: Full=Regulatory
factor X 2
gi|149028165|gb|EDL83603.1| similar to DNA-binding protein RFX2 [Rattus norvegicus]
gi|183986563|gb|AAI66527.1| Regulatory factor X, 2 (influences HLA class II expression) [Rattus
norvegicus]
Length = 692
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/293 (67%), Positives = 227/293 (77%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A LD ++ L F IE LW FW + ++ DE E L K KL L KC
Sbjct: 348 EATLDVVMNLQFQYIEKLWLSFWNCKATSSDGRASLPASDEEPEVTLLPKDKLISLCKCE 407
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE LIPDVLRP+P SLT +IRNFAK +E WL NAM G PQ++I
Sbjct: 408 PILQWMRSCDHILYQALVETLIPDVLRPVPSSLTQAIRNFAKSLEGWLINAMSGFPQQVI 467
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 468 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 527
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ SLVQ+LE DFK+TLQQQ+SL++WA+WL NVV VLK G P+F KAARQFLLKWS
Sbjct: 528 QCEESLVQRLEHDFKVTLQQQSSLDQWASWLDNVVTQVLKQHAGSPSFPKAARQFLLKWS 587
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 588 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMG 640
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 104/206 (50%), Gaps = 19/206 (9%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLV-KTDS-NSNQYGSEGH 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ K+DS S H
Sbjct: 231 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPTHQKPRYRPAQKSDSLGDGSAHSNMH 290
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T Q + Q +H D S+ P+FP DL L E T+ DV + +YR HC
Sbjct: 291 STPEQAMAA---QGQHHQQYIDVSHVFPEFPAPDLGSTLLQESVTLHDVKALQLVYRRHC 347
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA LD ++ L F IE LW FW + ++ DE E L K KL L KC
Sbjct: 348 EATLDVVMNLQFQYIEKLWLSFWNCKATSSDGRASLPASDEEPEVTLLPKDKLISLCKCE 407
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAF 218
P+ ++R D + YQ LVE LIPD
Sbjct: 408 PILQWMRSCDHILYQALVETLIPDVL 433
>gi|149716391|ref|XP_001495231.1| PREDICTED: DNA-binding protein RFX2 isoform 1 [Equus caballus]
Length = 727
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/293 (67%), Positives = 229/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A LD ++ L F IE LW FW S+ ++ DE E L K KL L KC
Sbjct: 383 EATLDVVMNLQFHYIEKLWLSFWNSKGSSGDGPASLPASDEEPEGAVLPKDKLVSLCKCD 442
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 443 PILKWMRNCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 502
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QI+QML+DLNRVDF NVQEQASWVC
Sbjct: 503 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQISQMLSDLNRVDFANVQEQASWVC 562
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL NVV VLK G P+F KAARQFLLKWS
Sbjct: 563 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDNVVTQVLKQHAGSPSFPKAARQFLLKWS 622
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 623 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 675
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 109/213 (51%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLVKTDSNSNQYGSEG--H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ + + + GS G H
Sbjct: 266 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGESGSHGSLH 325
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T Q + QS +H D S+ P+FP DL L E T+ DV + YR HC
Sbjct: 326 STPEQAMAA---QSQHHQQYIDVSHVFPEFPAPDLGSVLLHESVTLHDVKALQLAYRRHC 382
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA LD ++ L F IE LW FW S+ ++ DE E L K KL L KC
Sbjct: 383 EATLDVVMNLQFHYIEKLWLSFWNSKGSSGDGPASLPASDEEPEGAVLPKDKLVSLCKCD 442
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 443 PILKWMRNCDHILYQALVEILIPDVLRPVPSTL 475
>gi|354479218|ref|XP_003501810.1| PREDICTED: DNA-binding protein RFX2 isoform 1 [Cricetulus griseus]
Length = 717
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/293 (67%), Positives = 227/293 (77%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A LD ++ L F IE LW FW + ++ DE E L K KL L +C
Sbjct: 373 EATLDVVMNLQFQYIEKLWLSFWNCKTTSSDGRASLPASDEEPEVTLLPKDKLISLCRCE 432
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE LIPDVLRP+P SLT +IRNFAK +E WL NAM G PQ++I
Sbjct: 433 PILQWMRSCDHILYQALVETLIPDVLRPVPSSLTQAIRNFAKSLEGWLVNAMSGFPQQVI 492
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 493 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 552
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ SLVQ+LE DFK+TLQQQ+SL++WA+WL NVV VLK G P+F KAARQFLLKWS
Sbjct: 553 QCEESLVQRLEHDFKVTLQQQSSLDQWASWLDNVVTQVLKQHAGSPSFPKAARQFLLKWS 612
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 613 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMG 665
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 102/206 (49%), Gaps = 19/206 (9%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLVKTDSNSNQYGSEG--H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ + N G+ G H
Sbjct: 256 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPTHQKPRYRPAQKSDNLGDSGAHGNLH 315
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
T Q + Q +H D S+ P+FP DL L E T DV + +YR HC
Sbjct: 316 GTPEQAMAT---QGQHHQQYIDVSHVFPEFPAPDLGSVLLQESITPHDVKALQLVYRRHC 372
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA LD ++ L F IE LW FW + ++ DE E L K KL L +C
Sbjct: 373 EATLDVVMNLQFQYIEKLWLSFWNCKTTSSDGRASLPASDEEPEVTLLPKDKLISLCRCE 432
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAF 218
P+ ++R D + YQ LVE LIPD
Sbjct: 433 PILQWMRSCDHILYQALVETLIPDVL 458
>gi|26350635|dbj|BAC38954.1| unnamed protein product [Mus musculus]
Length = 963
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/306 (64%), Positives = 237/306 (77%), Gaps = 8/306 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR------SQDNNNGDECEEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR S+ E EK L ++ L LSK PV
Sbjct: 601 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPRASLVLLSKFQPV 660
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 661 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 720
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVD+ NVQEQASWVC+C
Sbjct: 721 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDYANVQEQASWVCRC 780
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 781 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSSGFPKAAKLFLLKWSFY 840
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 841 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLAT 898
Query: 510 SQNPMD 515
S NP+D
Sbjct: 899 SLNPLD 904
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 105/200 (52%), Gaps = 10/200 (5%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKY-KLVKTDSNSNQYGSEGHTTAGQTN 87
GNSKYHYYG+R+K SPL + ++ + RG+ + + + G GQ +
Sbjct: 485 GNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGVANGVAVGQQS 544
Query: 88 ---SNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFL 144
S+ S Q + D S ++PDF E+DL LPE D+ F+ +YREHCEA +
Sbjct: 545 TGLSDISAQVQQYQQFLDASRSLPDFAELDLQGKVLPEGVGPGDIKAFQVLYREHCEAIV 604
Query: 145 DAIVTLDFSTIESLWREFWR------SQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFV 198
D +V L F+ +E+LW+ FWR S+ E EK L ++ L LSK PV +
Sbjct: 605 DVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPRASLVLLSKFQPVLQWT 664
Query: 199 RRVDFLFYQNLVEVLIPDAF 218
+ D + YQ LVE+LIPD
Sbjct: 665 KHCDNVLYQGLVEILIPDVL 684
>gi|358412920|ref|XP_003582431.1| PREDICTED: LOW QUALITY PROTEIN: MHC class II regulatory factor RFX1
[Bos taurus]
Length = 975
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/305 (64%), Positives = 236/305 (77%), Gaps = 8/305 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR------SQDNNNGDECEEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR S+ E EK L K+ L LSK PV
Sbjct: 613 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKASLVLLSKFEPV 672
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 673 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 732
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 733 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 792
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 793 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSTGFPKAAKLFLLKWSFY 852
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 853 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLAT 910
Query: 510 SQNPM 514
S NP+
Sbjct: 911 SLNPL 915
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 102/204 (50%), Gaps = 17/204 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDEN-----GSPRGKKYKLV---KTDSNSNQYGSEGH 80
GNSKYHYYG+R+K SPL + + D+ G P +K +L K + +N
Sbjct: 496 GNSKYHYYGLRIKASSPLLRL-MEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGPQ 554
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
G S+ S Q + D S PD E+DL LPE D+ + +YREHC
Sbjct: 555 QATG--LSDISAQVQQYQQFLDASRKPPDLSELDLQGKVLPEGIGPGDIKXLQVLYREHC 612
Query: 141 EAFLDAIVTLDFSTIESLWREFWR------SQDNNNGDECEEEKYLSKSKLFCLSKCVPV 194
EA +D +V L F+ +E+LW+ FWR S+ E EK L K+ L LSK PV
Sbjct: 613 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKASLVLLSKFEPV 672
Query: 195 QAFVRRVDFLFYQNLVEVLIPDAF 218
+ + D + YQ LVE+LIPD
Sbjct: 673 LQWTKHCDNVLYQGLVEILIPDVL 696
>gi|354479224|ref|XP_003501813.1| PREDICTED: DNA-binding protein RFX2 isoform 4 [Cricetulus griseus]
Length = 720
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/293 (67%), Positives = 227/293 (77%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A LD ++ L F IE LW FW + ++ DE E L K KL L +C
Sbjct: 376 EATLDVVMNLQFQYIEKLWLSFWNCKTTSSDGRASLPASDEEPEVTLLPKDKLISLCRCE 435
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE LIPDVLRP+P SLT +IRNFAK +E WL NAM G PQ++I
Sbjct: 436 PILQWMRSCDHILYQALVETLIPDVLRPVPSSLTQAIRNFAKSLEGWLVNAMSGFPQQVI 495
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 496 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 555
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ SLVQ+LE DFK+TLQQQ+SL++WA+WL NVV VLK G P+F KAARQFLLKWS
Sbjct: 556 QCEESLVQRLEHDFKVTLQQQSSLDQWASWLDNVVTQVLKQHAGSPSFPKAARQFLLKWS 615
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 616 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMG 668
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 102/206 (49%), Gaps = 19/206 (9%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLVKTDSNSNQYGSEG--H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ + N G+ G H
Sbjct: 259 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPTHQKPRYRPAQKSDNLGDSGAHGNLH 318
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
T Q + Q +H D S+ P+FP DL L E T DV + +YR HC
Sbjct: 319 GTPEQAMAT---QGQHHQQYIDVSHVFPEFPAPDLGSVLLQESITPHDVKALQLVYRRHC 375
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA LD ++ L F IE LW FW + ++ DE E L K KL L +C
Sbjct: 376 EATLDVVMNLQFQYIEKLWLSFWNCKTTSSDGRASLPASDEEPEVTLLPKDKLISLCRCE 435
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAF 218
P+ ++R D + YQ LVE LIPD
Sbjct: 436 PILQWMRSCDHILYQALVETLIPDVL 461
>gi|354479220|ref|XP_003501811.1| PREDICTED: DNA-binding protein RFX2 isoform 2 [Cricetulus griseus]
gi|344237633|gb|EGV93736.1| DNA-binding protein RFX2 [Cricetulus griseus]
Length = 692
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/293 (67%), Positives = 227/293 (77%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A LD ++ L F IE LW FW + ++ DE E L K KL L +C
Sbjct: 348 EATLDVVMNLQFQYIEKLWLSFWNCKTTSSDGRASLPASDEEPEVTLLPKDKLISLCRCE 407
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE LIPDVLRP+P SLT +IRNFAK +E WL NAM G PQ++I
Sbjct: 408 PILQWMRSCDHILYQALVETLIPDVLRPVPSSLTQAIRNFAKSLEGWLVNAMSGFPQQVI 467
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 468 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 527
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ SLVQ+LE DFK+TLQQQ+SL++WA+WL NVV VLK G P+F KAARQFLLKWS
Sbjct: 528 QCEESLVQRLEHDFKVTLQQQSSLDQWASWLDNVVTQVLKQHAGSPSFPKAARQFLLKWS 587
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 588 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMG 640
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 102/206 (49%), Gaps = 19/206 (9%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLVKTDSNSNQYGSEG--H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ + N G+ G H
Sbjct: 231 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPTHQKPRYRPAQKSDNLGDSGAHGNLH 290
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
T Q + Q +H D S+ P+FP DL L E T DV + +YR HC
Sbjct: 291 GTPEQAMAT---QGQHHQQYIDVSHVFPEFPAPDLGSVLLQESITPHDVKALQLVYRRHC 347
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA LD ++ L F IE LW FW + ++ DE E L K KL L +C
Sbjct: 348 EATLDVVMNLQFQYIEKLWLSFWNCKTTSSDGRASLPASDEEPEVTLLPKDKLISLCRCE 407
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAF 218
P+ ++R D + YQ LVE LIPD
Sbjct: 408 PILQWMRSCDHILYQALVETLIPDVL 433
>gi|354479222|ref|XP_003501812.1| PREDICTED: DNA-binding protein RFX2 isoform 3 [Cricetulus griseus]
Length = 695
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/293 (67%), Positives = 227/293 (77%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A LD ++ L F IE LW FW + ++ DE E L K KL L +C
Sbjct: 351 EATLDVVMNLQFQYIEKLWLSFWNCKTTSSDGRASLPASDEEPEVTLLPKDKLISLCRCE 410
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE LIPDVLRP+P SLT +IRNFAK +E WL NAM G PQ++I
Sbjct: 411 PILQWMRSCDHILYQALVETLIPDVLRPVPSSLTQAIRNFAKSLEGWLVNAMSGFPQQVI 470
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 471 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 530
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ SLVQ+LE DFK+TLQQQ+SL++WA+WL NVV VLK G P+F KAARQFLLKWS
Sbjct: 531 QCEESLVQRLEHDFKVTLQQQSSLDQWASWLDNVVTQVLKQHAGSPSFPKAARQFLLKWS 590
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 591 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMG 643
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 102/206 (49%), Gaps = 19/206 (9%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLVKTDSNSNQYGSEG--H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ + N G+ G H
Sbjct: 234 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPTHQKPRYRPAQKSDNLGDSGAHGNLH 293
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
T Q + Q +H D S+ P+FP DL L E T DV + +YR HC
Sbjct: 294 GTPEQAMAT---QGQHHQQYIDVSHVFPEFPAPDLGSVLLQESITPHDVKALQLVYRRHC 350
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA LD ++ L F IE LW FW + ++ DE E L K KL L +C
Sbjct: 351 EATLDVVMNLQFQYIEKLWLSFWNCKTTSSDGRASLPASDEEPEVTLLPKDKLISLCRCE 410
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAF 218
P+ ++R D + YQ LVE LIPD
Sbjct: 411 PILQWMRSCDHILYQALVETLIPDVL 436
>gi|440912461|gb|ELR62027.1| MHC class II regulatory factor RFX1, partial [Bos grunniens mutus]
Length = 900
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/305 (65%), Positives = 237/305 (77%), Gaps = 8/305 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR SQ + E EK L K+ L LSK PV
Sbjct: 565 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKASLVLLSKFEPV 624
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 625 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 684
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 685 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 744
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 745 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSTGFPKAAKLFLLKWSFY 804
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 805 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLAT 862
Query: 510 SQNPM 514
S NP+
Sbjct: 863 SLNPL 867
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 107/204 (52%), Gaps = 17/204 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDEN-----GSPRGKKYKLV---KTDSNSNQYGSEGH 80
GNSKYHYYG+R+K SPL + + D+ G P +K +L K + +N
Sbjct: 448 GNSKYHYYGLRIKASSPLLRL-MEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGPQ 506
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
G S+ S Q + D S ++PDF E+DL LPE D+ F+ +YREHC
Sbjct: 507 QATG--LSDISAQVQQYQQFLDASRSLPDFSELDLQGKVLPEGIGPGDIKAFQVLYREHC 564
Query: 141 EAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 194
EA +D +V L F+ +E+LW+ FWR SQ + E EK L K+ L LSK PV
Sbjct: 565 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKASLVLLSKFEPV 624
Query: 195 QAFVRRVDFLFYQNLVEVLIPDAF 218
+ + D + YQ LVE+LIPD
Sbjct: 625 LQWTKHCDNVLYQGLVEILIPDVL 648
>gi|197097300|ref|NP_001125003.1| DNA-binding protein RFX2 [Pongo abelii]
gi|75042371|sp|Q5RDR2.1|RFX2_PONAB RecName: Full=DNA-binding protein RFX2; AltName: Full=Regulatory
factor X 2
gi|55726664|emb|CAH90095.1| hypothetical protein [Pongo abelii]
Length = 704
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/306 (65%), Positives = 236/306 (77%), Gaps = 8/306 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 378 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 437
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 438 PILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 497
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 498 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 557
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL +VV VLK G P+F KAARQFLLKWS
Sbjct: 558 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWS 617
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPV 507
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G + S V
Sbjct: 618 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMGERLSQNV 677
Query: 508 ESSQNP 513
S+ P
Sbjct: 678 TSALWP 683
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 112/213 (52%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLV-KTDSNSNQYGSEG-H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ KTDS + G H
Sbjct: 261 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSSSHSGLH 320
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T QT + Q+ +H D S+ P+FP DL L + T+ DV + +YR HC
Sbjct: 321 STPEQTTAA---QNQHHQQYIDVSHVFPEFPAPDLGSVLLQDGVTLHDVKALQLVYRRHC 377
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 378 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 437
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 438 PILRWMRSCDHILYQALVEILIPDVLRPVPSTL 470
>gi|410904141|ref|XP_003965551.1| PREDICTED: transcription factor RFX3-like [Takifugu rubripes]
Length = 757
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/298 (66%), Positives = 227/298 (76%), Gaps = 9/298 (3%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR---------SQDNNNGDECEEEKYLSKSKLFCLSKC 266
+A LD +V L FS IE LW+ FWR + N E E L S+L L +
Sbjct: 358 EAILDVVVNLQFSLIEKLWQTFWRYSLTDTVEGATVTENSSISEIEARLPTSQLMALCRN 417
Query: 267 VPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEM 326
V ++ D L YQ LVE+LIPDVLRPIP +LT +IRNFAK +E WL+NAM PQ M
Sbjct: 418 EAVLKWMSTCDHLMYQALVEILIPDVLRPIPSALTQAIRNFAKSLEGWLSNAMNAIPQRM 477
Query: 327 INIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWV 386
I KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWV
Sbjct: 478 IQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWV 537
Query: 387 CQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKW 446
CQC+ +VQ LE DFK TLQQQ+SLE+WA WL+NVV VLKP+E +P+F +AARQFLLKW
Sbjct: 538 CQCEERVVQHLEQDFKATLQQQSSLEQWAAWLENVVTQVLKPYEHRPSFPRAARQFLLKW 597
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKES 504
SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPI V+G +S
Sbjct: 598 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIGVMGEFDS 655
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 106/207 (51%), Gaps = 18/207 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYKLV-KTDSNSNQ-YGSEGH 80
GNSKYHYYGIRVKPDSPLN + + + R +++K V K DS + + Y G
Sbjct: 239 GNSKYHYYGIRVKPDSPLNRLQEDMQYMALRQQPVQQKQRFKPVQKFDSCAGENYSGGGQ 298
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
G Q +H D S A+PDF E++L E+ + EDV +S+YREHC
Sbjct: 299 AHPGAAEQTVIAQRQHHQQFLDSSRALPDFIELELGPSNT-ENISPEDVKALQSLYREHC 357
Query: 141 EAFLDAIVTLDFSTIESLWREFWR---------SQDNNNGDECEEEKYLSKSKLFCLSKC 191
EA LD +V L FS IE LW+ FWR + N E E L S+L L +
Sbjct: 358 EAILDVVVNLQFSLIEKLWQTFWRYSLTDTVEGATVTENSSISEIEARLPTSQLMALCRN 417
Query: 192 VPVQAFVRRVDFLFYQNLVEVLIPDAF 218
V ++ D L YQ LVE+LIPD
Sbjct: 418 EAVLKWMSTCDHLMYQALVEILIPDVL 444
>gi|426229093|ref|XP_004008627.1| PREDICTED: DNA-binding protein RFX2 isoform 1 [Ovis aries]
Length = 723
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/293 (67%), Positives = 230/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNG-------DECEEEKYLSKSKLFCLSKCVP 268
+A LD ++ L F IE LW FW S+ +++G DE E L K KL L KC P
Sbjct: 384 EATLDVVMNLQFHYIEKLWLSFWNSKSSSDGPTSLPASDEEPEGAVLPKDKLVSLCKCDP 443
Query: 269 VQAFVRRVDFLFYQNLVEVLIPDVLRPIPG-SLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
V ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 444 VLRWMRTCDHILYQALVEILIPDVLRPVPSETLTQAIRNFAKSLEGWLTNAMSDFPQQVI 503
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 504 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 563
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ +VQ+LE DFKLTLQQQ+SL++WA+WL NVV VLK G P+F KAARQFLLKWS
Sbjct: 564 QCEEGVVQRLEQDFKLTLQQQSSLDQWASWLDNVVTQVLKQHAGSPSFPKAARQFLLKWS 623
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 624 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 676
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 108/205 (52%), Gaps = 18/205 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLVKTDSNSNQYGSEG--H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ + + + GS H
Sbjct: 267 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPVHQKPRYRPAQKTDSLGESGSHSSLH 326
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T Q + QS +H D S+ P+FP DL L E T+ DV + YR HC
Sbjct: 327 STPEQAMAA---QSQHHQQYIDVSHVFPEFPAPDLGSVLLQESVTLHDVRALQLAYRRHC 383
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNNG-------DECEEEKYLSKSKLFCLSKCVP 193
EA LD ++ L F IE LW FW S+ +++G DE E L K KL L KC P
Sbjct: 384 EATLDVVMNLQFHYIEKLWLSFWNSKSSSDGPTSLPASDEEPEGAVLPKDKLVSLCKCDP 443
Query: 194 VQAFVRRVDFLFYQNLVEVLIPDAF 218
V ++R D + YQ LVE+LIPD
Sbjct: 444 VLRWMRTCDHILYQALVEILIPDVL 468
>gi|338726605|ref|XP_001495252.2| PREDICTED: DNA-binding protein RFX2 isoform 2 [Equus caballus]
Length = 652
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/293 (67%), Positives = 229/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A LD ++ L F IE LW FW S+ ++ DE E L K KL L KC
Sbjct: 308 EATLDVVMNLQFHYIEKLWLSFWNSKGSSGDGPASLPASDEEPEGAVLPKDKLVSLCKCD 367
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 368 PILKWMRNCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 427
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QI+QML+DLNRVDF NVQEQASWVC
Sbjct: 428 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQISQMLSDLNRVDFANVQEQASWVC 487
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL NVV VLK G P+F KAARQFLLKWS
Sbjct: 488 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDNVVTQVLKQHAGSPSFPKAARQFLLKWS 547
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 548 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 600
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 109/213 (51%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLVKTDSNSNQYGSEG--H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ + + + GS G H
Sbjct: 191 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGESGSHGSLH 250
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T Q + QS +H D S+ P+FP DL L E T+ DV + YR HC
Sbjct: 251 STPEQAMAA---QSQHHQQYIDVSHVFPEFPAPDLGSVLLHESVTLHDVKALQLAYRRHC 307
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA LD ++ L F IE LW FW S+ ++ DE E L K KL L KC
Sbjct: 308 EATLDVVMNLQFHYIEKLWLSFWNSKGSSGDGPASLPASDEEPEGAVLPKDKLVSLCKCD 367
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 368 PILKWMRNCDHILYQALVEILIPDVLRPVPSTL 400
>gi|297476523|ref|XP_002688797.1| PREDICTED: MHC class II regulatory factor RFX1 [Bos taurus]
gi|296485995|tpg|DAA28110.1| TPA: regulatory factor X3-like [Bos taurus]
Length = 659
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/305 (65%), Positives = 236/305 (77%), Gaps = 8/305 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 269
A +D +V L F+ +E+LW+ FWR SQ + E EK L K+ L LSK PV
Sbjct: 297 KAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKASLVLLSKFEPV 356
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 357 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 416
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 417 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 476
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 477 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSTGFPKAAKLFLLKWSFY 536
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 537 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLAT 594
Query: 510 SQNPM 514
S NP+
Sbjct: 595 SLNPL 599
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 141 EAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 194
+A +D +V L F+ +E+LW+ FWR SQ + E EK L K+ L LSK PV
Sbjct: 297 KAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKASLVLLSKFEPV 356
Query: 195 QAFVRRVDFLFYQNLVEVLIPDAF 218
+ + D + YQ LVE+LIPD
Sbjct: 357 LQWTKHCDNVLYQGLVEILIPDVL 380
>gi|426229095|ref|XP_004008628.1| PREDICTED: DNA-binding protein RFX2 isoform 2 [Ovis aries]
Length = 698
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/293 (67%), Positives = 230/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNG-------DECEEEKYLSKSKLFCLSKCVP 268
+A LD ++ L F IE LW FW S+ +++G DE E L K KL L KC P
Sbjct: 359 EATLDVVMNLQFHYIEKLWLSFWNSKSSSDGPTSLPASDEEPEGAVLPKDKLVSLCKCDP 418
Query: 269 VQAFVRRVDFLFYQNLVEVLIPDVLRPIPG-SLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
V ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 419 VLRWMRTCDHILYQALVEILIPDVLRPVPSETLTQAIRNFAKSLEGWLTNAMSDFPQQVI 478
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 479 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 538
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ +VQ+LE DFKLTLQQQ+SL++WA+WL NVV VLK G P+F KAARQFLLKWS
Sbjct: 539 QCEEGVVQRLEQDFKLTLQQQSSLDQWASWLDNVVTQVLKQHAGSPSFPKAARQFLLKWS 598
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 599 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 651
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 108/205 (52%), Gaps = 18/205 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLVKTDSNSNQYGSEG--H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ + + + GS H
Sbjct: 242 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPVHQKPRYRPAQKTDSLGESGSHSSLH 301
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T Q + QS +H D S+ P+FP DL L E T+ DV + YR HC
Sbjct: 302 STPEQAMAA---QSQHHQQYIDVSHVFPEFPAPDLGSVLLQESVTLHDVRALQLAYRRHC 358
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNNG-------DECEEEKYLSKSKLFCLSKCVP 193
EA LD ++ L F IE LW FW S+ +++G DE E L K KL L KC P
Sbjct: 359 EATLDVVMNLQFHYIEKLWLSFWNSKSSSDGPTSLPASDEEPEGAVLPKDKLVSLCKCDP 418
Query: 194 VQAFVRRVDFLFYQNLVEVLIPDAF 218
V ++R D + YQ LVE+LIPD
Sbjct: 419 VLRWMRTCDHILYQALVEILIPDVL 443
>gi|395850765|ref|XP_003797946.1| PREDICTED: MHC class II regulatory factor RFX1 [Otolemur garnettii]
Length = 982
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/291 (66%), Positives = 230/291 (79%), Gaps = 6/291 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR SQ + E EK L K+ L LSK PV
Sbjct: 620 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKASLVLLSKFEPV 679
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 680 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 739
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAF+Q LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 740 KVAAAGAFSQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 799
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 800 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSAGFPKAAKLFLLKWSFY 859
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G
Sbjct: 860 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG 910
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 107/203 (52%), Gaps = 15/203 (7%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYK-------LVKTDSNSNQYGSEGHT 81
GNSKYHYYG+R+K SPL + ++ + RG+ + + K + +N
Sbjct: 503 GNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGQQQ 562
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
+ G S+ S Q + D S ++PDF E+DL LPE D+ F+ +YREHCE
Sbjct: 563 STG--LSDISAQVQQYQQFLDASRSLPDFTELDLQGKVLPEGVGPGDIKAFQVLYREHCE 620
Query: 142 AFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPVQ 195
A +D +V L F+ +E+LW+ FWR SQ + E EK L K+ L LSK PV
Sbjct: 621 AIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKASLVLLSKFEPVL 680
Query: 196 AFVRRVDFLFYQNLVEVLIPDAF 218
+ + D + YQ LVE+LIPD
Sbjct: 681 QWTKHCDNVLYQGLVEILIPDVL 703
>gi|345327773|ref|XP_001513118.2| PREDICTED: DNA-binding protein RFX2-like [Ornithorhynchus anatinus]
Length = 868
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/319 (64%), Positives = 240/319 (75%), Gaps = 12/319 (3%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN---------GDECEEEKYLSKSKLFCLSKC 266
+A LD ++ L F IE LW FW S+ +N DE E + K KL + KC
Sbjct: 488 EATLDVVMNLQFHYIEKLWLSFWSSKPPSNEDGSIPMPPSDEEHEVVIIPKDKLIAVCKC 547
Query: 267 VPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEM 326
V ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++
Sbjct: 548 DSVLKWMRSCDHILYQTLVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQI 607
Query: 327 INIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWV 386
I KV+ V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWV
Sbjct: 608 IQTKVSVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWV 667
Query: 387 CQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKW 446
CQC+ LVQ+LE DFKLTLQQQ+SL++WANWL NVV VLK G+P+F KAARQFLLKW
Sbjct: 668 CQCEEGLVQKLEQDFKLTLQQQSSLDQWANWLDNVVTQVLKHHVGRPSFPKAARQFLLKW 727
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNP 506
SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G E N
Sbjct: 728 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG--EFND 785
Query: 507 VES-SQNPMDNGLYAHGQN 524
+ S S +D G+ +N
Sbjct: 786 LASLSVTLLDKGIIQDHRN 804
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 106/210 (50%), Gaps = 27/210 (12%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDE----NGSPRGKKYKLVKTDSNSNQYGSEGHTTAG 84
GNSKYHYYGIR+KPDSPLN + + P +K L++ ++ + + +T
Sbjct: 386 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPAHQKQSLIE-ETKIDLQALKMYTDFK 444
Query: 85 QTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFL 144
+N + H F P+FP +DLS L E+ T+ D+ T + +YR HCEA L
Sbjct: 445 NGEANVA-----HVF--------PEFPTLDLSNILLQEEITLNDIKTLQLLYRRHCEATL 491
Query: 145 DAIVTLDFSTIESLWREFWRSQDNNN---------GDECEEEKYLSKSKLFCLSKCVPVQ 195
D ++ L F IE LW FW S+ +N DE E + K KL + KC V
Sbjct: 492 DVVMNLQFHYIEKLWLSFWSSKPPSNEDGSIPMPPSDEEHEVVIIPKDKLIAVCKCDSVL 551
Query: 196 AFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
++R D + YQ LVE+LIPD TL
Sbjct: 552 KWMRSCDHILYQTLVEILIPDVLRPVPSTL 581
>gi|432885932|ref|XP_004074822.1| PREDICTED: transcription factor RFX3-like [Oryzias latipes]
Length = 754
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/298 (65%), Positives = 226/298 (75%), Gaps = 9/298 (3%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR---------SQDNNNGDECEEEKYLSKSKLFCLSKC 266
+A LD +V L FS IE LW FWR + N E E L +++L L +
Sbjct: 355 EAILDVVVNLQFSLIEKLWETFWRYSPPETVEGATVTENSSISEIEARLPRARLLVLCRN 414
Query: 267 VPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEM 326
V ++ D L YQ LVE+LIPDVLRPIP +LT +IRNFAK +E WL NAM PQ M
Sbjct: 415 EAVLKWMSTCDHLMYQALVEILIPDVLRPIPSALTQAIRNFAKSLEGWLNNAMNAIPQRM 474
Query: 327 INIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWV 386
I K+ AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWV
Sbjct: 475 IQTKIAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWV 534
Query: 387 CQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKW 446
CQC+ ++VQ LE DFK TLQQQ+SLE+WA WL NVV VLKP+E +P+F +AARQFLLKW
Sbjct: 535 CQCEETVVQHLEQDFKATLQQQSSLEQWAAWLDNVVTQVLKPYEHRPSFPRAARQFLLKW 594
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKES 504
SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPI V+G +S
Sbjct: 595 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIGVMGEFDS 652
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 106/207 (51%), Gaps = 18/207 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNI-------PLSDENGSPRGKKYKLVKTDSNSNQ-YGSEGH 80
GNSKYHYYGIRVKPDSPLN + L + + + + K DS+S + Y G
Sbjct: 236 GNSKYHYYGIRVKPDSPLNRLQEDMQYMALKQQPVQQKQRFKPVQKFDSSSGENYSGGGQ 295
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
G QS +H D S A+PDF E+DL + E+ + EDV +S+YREHC
Sbjct: 296 HHPGAAEQTVIAQSQHHQQFIDASRALPDFVELDLGQSNT-ENISSEDVKALQSLYREHC 354
Query: 141 EAFLDAIVTLDFSTIESLWREFWR---------SQDNNNGDECEEEKYLSKSKLFCLSKC 191
EA LD +V L FS IE LW FWR + N E E L +++L L +
Sbjct: 355 EAILDVVVNLQFSLIEKLWETFWRYSPPETVEGATVTENSSISEIEARLPRARLLVLCRN 414
Query: 192 VPVQAFVRRVDFLFYQNLVEVLIPDAF 218
V ++ D L YQ LVE+LIPD
Sbjct: 415 EAVLKWMSTCDHLMYQALVEILIPDVL 441
>gi|403295978|ref|XP_003938898.1| PREDICTED: DNA-binding protein RFX2 [Saimiri boliviensis
boliviensis]
Length = 698
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/293 (66%), Positives = 229/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A LD ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 353 EATLDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 412
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 413 PILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 472
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 473 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 532
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL VV VLK G P+F KAARQFLLKWS
Sbjct: 533 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDGVVTQVLKQHAGSPSFPKAARQFLLKWS 592
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 593 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 645
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 110/213 (51%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLVKTDSNSNQYGSEG--H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ + + GS H
Sbjct: 236 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSSLH 295
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T QT + QS +H D S+ P+FP DL L E T+ DV + +YR HC
Sbjct: 296 STPEQTMAA---QSQHHQQYIDVSHVFPEFPAPDLGSVLLQEGVTLHDVKALQLVYRRHC 352
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA LD ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 353 EATLDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 412
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 413 PILRWMRSCDHILYQALVEILIPDVLRPVPSTL 445
>gi|441628622|ref|XP_003281614.2| PREDICTED: DNA-binding protein RFX2 isoform 1 [Nomascus leucogenys]
Length = 727
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/293 (66%), Positives = 230/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 378 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 437
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 438 PILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 497
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 498 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 557
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL +VV VLK G P+F KAARQFLLKWS
Sbjct: 558 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWS 617
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 618 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 670
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 112/213 (52%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLV-KTDSNSNQYGSEG-H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ KTDS + G H
Sbjct: 261 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSGLH 320
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T QT + QS +H D S+ P+FP DL L + T+ DV + +YR HC
Sbjct: 321 STPEQTMAA---QSQHHQQYIDVSHVFPEFPAPDLGSVLLQDGVTLHDVKALQLVYRRHC 377
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 378 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 437
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 438 PILRWMRSCDHILYQALVEILIPDVLRPVPSTL 470
>gi|426230478|ref|XP_004023697.1| PREDICTED: LOW QUALITY PROTEIN: MHC class II regulatory factor
RFX1-like [Ovis aries]
Length = 908
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/306 (65%), Positives = 236/306 (77%), Gaps = 8/306 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F +E+LW+ FWR SQ + E EK L K+ L LSK PV
Sbjct: 584 EAIVDVMVNLQFPLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKASLVLLSKFEPV 643
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRP P +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 644 LQWTKHCDNVLYQGLVEILIPDVLRPPPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 703
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 704 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 763
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 764 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSTGFPKAAKLFLLKWSFY 823
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 824 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLAT 881
Query: 510 SQNPMD 515
S NP+D
Sbjct: 882 SLNPLD 887
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 106/204 (51%), Gaps = 17/204 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDEN-----GSPRGKKYKLV---KTDSNSNQYGSEGH 80
GNSKYHYYG+R+K SPL + + D+ G P +K +L K + +N
Sbjct: 467 GNSKYHYYGLRIKASSPLLRL-MEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGPQ 525
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
G S+ S Q + D S ++PDF E+DL LPE D+ F+ +YREHC
Sbjct: 526 QATG--LSDISSQVQQYQQFLDASRSLPDFSELDLQGKVLPEGIGPGDIKAFQVLYREHC 583
Query: 141 EAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 194
EA +D +V L F +E+LW+ FWR SQ + E EK L K+ L LSK PV
Sbjct: 584 EAIVDVMVNLQFPLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKASLVLLSKFEPV 643
Query: 195 QAFVRRVDFLFYQNLVEVLIPDAF 218
+ + D + YQ LVE+LIPD
Sbjct: 644 LQWTKHCDNVLYQGLVEILIPDVL 667
>gi|118343966|ref|NP_001071807.1| regulatory factor X [Ciona intestinalis]
gi|70571057|dbj|BAE06671.1| regulatory factor X [Ciona intestinalis]
Length = 803
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 223/480 (46%), Positives = 282/480 (58%), Gaps = 82/480 (17%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIP------LSDENGSPRGKKYKLVKTDSNSNQYGSEGHTT 82
GNSKYHYYGIR+K +SPLN++ + S K++K + ++ + H T
Sbjct: 306 GNSKYHYYGIRIKGNSPLNSLQEEISYIAMRQQPSSHTKRFKALPPAQGDHKPNIDNHAT 365
Query: 83 AGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEA 142
T + FLGD + LP D+D +++ E
Sbjct: 366 QSATEQVQQQAQQHQQFLGDATQ-------------ALP------DLDPIQAM--EGDPP 404
Query: 143 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 202
I + D +E L+R D C
Sbjct: 405 MPSGITSDDLLILEDLYR-----------DHCAN-------------------------- 427
Query: 203 FLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFC 262
LD IV+L F+ +E+LW+ FWR+ D+ N + E E L + KL
Sbjct: 428 ---------------VLDIIVSLQFAMVENLWQSFWRA-DSENMMKSELEAKLPRHKLMI 471
Query: 263 LSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGC 322
+ +PVQ +++ D + YQ+LVEVLIPDVLRPIP +LT +IRNFAKG+E+ L NA++
Sbjct: 472 MCNWIPVQRWIKDSDHMMYQSLVEVLIPDVLRPIPSALTQAIRNFAKGLEAGLNNALKKA 531
Query: 323 --PQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQ 380
P ++ +K+ AV AF+Q LRRYTSLNHLAQAARAVL N QINQML DLNRVDF NVQ
Sbjct: 532 DIPPDLTKLKIAAVSAFSQTLRRYTSLNHLAQAARAVLNNVAQINQMLADLNRVDFTNVQ 591
Query: 381 EQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAAR 440
EQASWVCQC S+V +LE+DFK L +Q +LE+WA+WL+ VV +L P EG P FTKAAR
Sbjct: 592 EQASWVCQCPDSVVHELETDFKTALSEQRTLEQWADWLETVVGKMLLPHEGTPGFTKAAR 651
Query: 441 QFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
QFLLKW FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGET IAV+G
Sbjct: 652 QFLLKWCFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETAIAVMG 711
>gi|26332070|dbj|BAC29765.1| unnamed protein product [Mus musculus]
Length = 695
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/306 (64%), Positives = 237/306 (77%), Gaps = 8/306 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR------SQDNNNGDECEEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR S+ E EK L ++ L LSK PV
Sbjct: 333 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPRASLVLLSKFQPV 392
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 393 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 452
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 453 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 512
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 513 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSSGFPKAAKLFLLKWSFY 572
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 573 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLAT 630
Query: 510 SQNPMD 515
S NP+D
Sbjct: 631 SLNPLD 636
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 105/200 (52%), Gaps = 10/200 (5%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKY-KLVKTDSNSNQYGSEGHTTAGQTN 87
GNSKYHYYG+R+K SPL + ++ + RG+ + + + G GQ +
Sbjct: 217 GNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGVANGVAVGQQS 276
Query: 88 ---SNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFL 144
S+ S Q + D S ++PDF E+DL LPE D+ F+ +YREHCEA +
Sbjct: 277 TGLSDISAQVQQYQQFLDASRSLPDFAELDLQGKVLPEGVGPGDIKAFQVLYREHCEAIV 336
Query: 145 DAIVTLDFSTIESLWREFWR------SQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFV 198
D +V L F+ +E+LW+ FWR S+ E EK L ++ L LSK PV +
Sbjct: 337 DVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPRASLVLLSKFQPVLQWT 396
Query: 199 RRVDFLFYQNLVEVLIPDAF 218
+ D + YQ LVE+LIPD
Sbjct: 397 KHCDNVLYQGLVEILIPDVL 416
>gi|355703032|gb|EHH29523.1| hypothetical protein EGK_09978 [Macaca mulatta]
Length = 726
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/293 (66%), Positives = 230/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 381 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 440
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 441 PILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 500
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 501 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 560
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL +VV VLK G P+F KAARQFLLKWS
Sbjct: 561 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWS 620
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 621 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 673
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 110/213 (51%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLVKTDSNSNQYGSEG--H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ + + GS H
Sbjct: 264 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSSLH 323
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T QT + QS +H D S+ P+FP DL L + T+ DV + +YR HC
Sbjct: 324 STPEQTMAA---QSQHHQQYIDVSHVFPEFPAPDLGSVLLQDGVTLHDVKALQLVYRRHC 380
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 381 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 440
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 441 PILRWMRSCDHILYQALVEILIPDVLRPVPSTL 473
>gi|75075531|sp|Q4R3Z4.1|RFX2_MACFA RecName: Full=DNA-binding protein RFX2; AltName: Full=Regulatory
factor X 2
gi|67971660|dbj|BAE02172.1| unnamed protein product [Macaca fascicularis]
Length = 723
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/293 (66%), Positives = 230/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 378 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 437
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 438 PILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 497
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 498 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 557
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL +VV VLK G P+F KAARQFLLKWS
Sbjct: 558 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWS 617
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 618 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 670
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 110/213 (51%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLVKTDSNSNQYGSEG--H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ + + GS H
Sbjct: 261 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSSLH 320
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T QT + QS +H D S+ P+FP DL L + T+ DV + +YR HC
Sbjct: 321 STPEQTMAA---QSQHHQQYIDVSHVFPEFPAPDLGSVLLQDGVTLHDVKALQLVYRRHC 377
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 378 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 437
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 438 PILRWMRSCDHILYQALVEILIPDVLRPVPSTL 470
>gi|410297198|gb|JAA27199.1| regulatory factor X, 2 (influences HLA class II expression) [Pan
troglodytes]
Length = 723
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/293 (66%), Positives = 230/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 378 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 437
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 438 PILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 497
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 498 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 557
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL +VV VLK G P+F KAARQFLLKWS
Sbjct: 558 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWS 617
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 618 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 670
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 112/213 (52%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLV-KTDSNSNQYGSEG-H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ KTDS + G H
Sbjct: 261 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSGLH 320
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T QT + QS +H D S+ P+FP DL L + T+ DV + +YR HC
Sbjct: 321 STPEQTMAV---QSQHHQQYIDVSHVFPEFPAPDLGSVLLQDGVTLHDVKALQLVYRRHC 377
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 378 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 437
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 438 PILRWMRSCDHILYQALVEILIPDVLRPVPSTL 470
>gi|441628625|ref|XP_004089380.1| PREDICTED: DNA-binding protein RFX2 isoform 2 [Nomascus leucogenys]
Length = 702
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/293 (66%), Positives = 230/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 353 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 412
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 413 PILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 472
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 473 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 532
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL +VV VLK G P+F KAARQFLLKWS
Sbjct: 533 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWS 592
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 593 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 645
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 112/213 (52%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLV-KTDSNSNQYGSEG-H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ KTDS + G H
Sbjct: 236 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSGLH 295
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T QT + QS +H D S+ P+FP DL L + T+ DV + +YR HC
Sbjct: 296 STPEQTMAA---QSQHHQQYIDVSHVFPEFPAPDLGSVLLQDGVTLHDVKALQLVYRRHC 352
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 353 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 412
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 413 PILRWMRSCDHILYQALVEILIPDVLRPVPSTL 445
>gi|397497139|ref|XP_003819373.1| PREDICTED: DNA-binding protein RFX2 isoform 1 [Pan paniscus]
gi|397497141|ref|XP_003819374.1| PREDICTED: DNA-binding protein RFX2 isoform 2 [Pan paniscus]
Length = 723
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/293 (66%), Positives = 230/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 378 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 437
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 438 PILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 497
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 498 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 557
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL +VV VLK G P+F KAARQFLLKWS
Sbjct: 558 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWS 617
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 618 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 670
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 111/213 (52%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLVKTDSNSNQYGSEG--H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ + + GS G H
Sbjct: 261 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHGGLH 320
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T QT + QS +H D S+ P+FP DL L + T+ DV + +YR HC
Sbjct: 321 STPEQTMAV---QSQHHQQYIDVSHVFPEFPAPDLGSVLLQDGVTLHDVKALQLVYRRHC 377
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 378 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 437
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 438 PILRWMRSCDHILYQALVEILIPDVLRPVPSTL 470
>gi|19743881|ref|NP_000626.2| DNA-binding protein RFX2 isoform a [Homo sapiens]
gi|254763325|sp|P48378.2|RFX2_HUMAN RecName: Full=DNA-binding protein RFX2; AltName: Full=Regulatory
factor X 2
gi|119589518|gb|EAW69112.1| regulatory factor X, 2 (influences HLA class II expression),
isoform CRA_a [Homo sapiens]
Length = 723
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/293 (66%), Positives = 230/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 378 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 437
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 438 PILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 497
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 498 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 557
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL +VV VLK G P+F KAARQFLLKWS
Sbjct: 558 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWS 617
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 618 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 670
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 112/213 (52%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLV-KTDSNSNQYGSEG-H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ KTDS + G H
Sbjct: 261 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSGLH 320
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T QT + QS +H D S+ P+FP DL L + T+ DV + +YR HC
Sbjct: 321 STPEQTMAV---QSQHHQQYIDVSHVFPEFPAPDLGSFLLQDGVTLHDVKALQLVYRRHC 377
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 378 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 437
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 438 PILRWMRSCDHILYQALVEILIPDVLRPVPSTL 470
>gi|19743879|ref|NP_602309.1| DNA-binding protein RFX2 isoform b [Homo sapiens]
gi|119589522|gb|EAW69116.1| regulatory factor X, 2 (influences HLA class II expression),
isoform CRA_e [Homo sapiens]
Length = 698
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/293 (66%), Positives = 230/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 353 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 412
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 413 PILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 472
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 473 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 532
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL +VV VLK G P+F KAARQFLLKWS
Sbjct: 533 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWS 592
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 593 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 645
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 112/213 (52%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLV-KTDSNSNQYGSEG-H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ KTDS + G H
Sbjct: 236 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSGLH 295
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T QT + QS +H D S+ P+FP DL L + T+ DV + +YR HC
Sbjct: 296 STPEQTMAV---QSQHHQQYIDVSHVFPEFPAPDLGSFLLQDGVTLHDVKALQLVYRRHC 352
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 353 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 412
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 413 PILRWMRSCDHILYQALVEILIPDVLRPVPSTL 445
>gi|47940067|gb|AAH71571.1| RFX2 protein [Homo sapiens]
Length = 723
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/293 (66%), Positives = 230/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 378 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 437
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 438 PILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 497
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 498 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 557
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL +VV VLK G P+F KAARQFLLKWS
Sbjct: 558 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWS 617
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 618 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 670
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 112/213 (52%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLV-KTDSNSNQYGSEG-H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ KTDS + G H
Sbjct: 261 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSGLH 320
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T QT + QS +H D S+ P+FP DL L + T+ DV + +YR HC
Sbjct: 321 STPEQTMAV---QSQHHQQYIDVSHVFPEFPAPDLGSFLLQDGVTLHDVKALQLVYRRHC 377
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 378 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 437
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 438 PILRWMRSCDHILYQALVEILIPDVLRPVPSTL 470
>gi|355716228|gb|AES05546.1| regulatory factor X, 1 [Mustela putorius furo]
Length = 440
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/306 (65%), Positives = 238/306 (77%), Gaps = 8/306 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR SQ N E EK L K+ L LSK PV
Sbjct: 79 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPNEAPPLAVHDEAEKRLPKASLVLLSKFEPV 138
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 139 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 198
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 199 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 258
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 259 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSTGFPKAAKLFLLKWSFY 318
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 319 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLTT 376
Query: 510 SQNPMD 515
S NP+D
Sbjct: 377 SLNPLD 382
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 82/158 (51%), Gaps = 8/158 (5%)
Query: 67 KTDSNSNQYGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTI 126
K + +N AG S+ S Q + D + ++PDF E+DL LPE
Sbjct: 7 KMEGMTNGVAVGPQQAAGL--SDISAQVQQYQQFLDAARSLPDFSELDLQGKVLPEGVGP 64
Query: 127 EDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYL 180
D+ F+ +YREHCEA +D +V L F+ +E+LW+ FWR SQ N E EK L
Sbjct: 65 GDIKAFQVLYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQPNEAPPLAVHDEAEKRL 124
Query: 181 SKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
K+ L LSK PV + + D + YQ LVE+LIPD
Sbjct: 125 PKASLVLLSKFEPVLQWTKHCDNVLYQGLVEILIPDVL 162
>gi|410220666|gb|JAA07552.1| regulatory factor X, 2 (influences HLA class II expression) [Pan
troglodytes]
gi|410297196|gb|JAA27198.1| regulatory factor X, 2 (influences HLA class II expression) [Pan
troglodytes]
gi|410332817|gb|JAA35355.1| regulatory factor X, 2 (influences HLA class II expression) [Pan
troglodytes]
Length = 698
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/293 (66%), Positives = 230/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 353 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 412
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 413 PILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 472
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 473 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 532
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL +VV VLK G P+F KAARQFLLKWS
Sbjct: 533 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWS 592
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 593 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 645
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 112/213 (52%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLV-KTDSNSNQYGSEG-H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ KTDS + G H
Sbjct: 236 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSGLH 295
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T QT + QS +H D S+ P+FP DL L + T+ DV + +YR HC
Sbjct: 296 STPEQTMAV---QSQHHQQYIDVSHVFPEFPAPDLGSVLLQDGVTLHDVKALQLVYRRHC 352
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 353 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 412
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 413 PILRWMRSCDHILYQALVEILIPDVLRPVPSTL 445
>gi|452390|emb|CAA53705.1| DNA binding protein RFX2 [Homo sapiens]
Length = 723
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/293 (66%), Positives = 230/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 378 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 437
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 438 PILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 497
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 498 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 557
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL +VV VLK G P+F KAARQFLLKWS
Sbjct: 558 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWS 617
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 618 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 670
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 112/213 (52%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLV-KTDSNSNQYGSEG-H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ KTDS + G H
Sbjct: 261 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSGLH 320
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T QT + QS +H D S+ P+FP DL L + T+ DV + +YR HC
Sbjct: 321 STPEQTMAV---QSQHHQQYIDVSHVFPEFPAPDLGSFLLQDGVTLHDVKALQLVYRRHC 377
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 378 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 437
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 438 PILRWMRSCDHILYQALVEILIPDVLRPVPSTL 470
>gi|261858644|dbj|BAI45844.1| regulatory factor X, 2 [synthetic construct]
Length = 698
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/293 (66%), Positives = 230/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 353 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 412
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 413 PILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 472
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 473 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 532
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL +VV VLK G P+F KAARQFLLKWS
Sbjct: 533 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWS 592
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 593 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 645
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 112/213 (52%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLV-KTDSNSNQYGSEG-H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ KTDS + G H
Sbjct: 236 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSGLH 295
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T QT + QS +H D S+ P+FP DL L + T+ DV + +YR HC
Sbjct: 296 STPEQTMAV---QSQHHQQYIDVSHVFPEFPAPDLGSFLLQDGVTLHDVKALQLVYRRHC 352
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 353 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 412
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 413 PILRWMRSCDHILYQALVEILIPDVLRPVPSTL 445
>gi|158255828|dbj|BAF83885.1| unnamed protein product [Homo sapiens]
Length = 698
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/293 (66%), Positives = 230/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 353 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 412
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 413 PILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 472
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 473 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 532
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL +VV VLK G P+F KAARQFLLKWS
Sbjct: 533 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWS 592
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 593 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 645
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 112/213 (52%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLV-KTDSNSNQYGSEG-H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ KTDS + G H
Sbjct: 236 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSGLH 295
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T QT + QS +H D S+ P+FP DL L + T+ DV + +YR HC
Sbjct: 296 STPEQTMAV---QSQHHQQYIDVSHVFPEFPAPDLGSFLLQDGVTLHDVKALQLVYRRHC 352
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 353 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 412
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 413 PILRWMRSCDHILYQALVEILIPDVLRPVPSTL 445
>gi|402903897|ref|XP_003914791.1| PREDICTED: DNA-binding protein RFX2 isoform 1 [Papio anubis]
Length = 698
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/293 (66%), Positives = 230/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 353 EATVDVVMNLQFHYIEKLWFAFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 412
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 413 PILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 472
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 473 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 532
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL +VV VLK G P+F KAARQFLLKWS
Sbjct: 533 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWS 592
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 593 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 645
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 110/213 (51%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLVKTDSNSNQYGSEG--H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ + + GS H
Sbjct: 236 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSSLH 295
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T QT + QS +H D S+ P+FP DL L + T+ DV + +YR HC
Sbjct: 296 STPEQTMAA---QSQHHQQYIDVSHVFPEFPAPDLGSVLLQDGVTLHDVKALQLVYRRHC 352
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 353 EATVDVVMNLQFHYIEKLWFAFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 412
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 413 PILRWMRSCDHILYQALVEILIPDVLRPVPSTL 445
>gi|297275891|ref|XP_001086864.2| PREDICTED: DNA-binding protein RFX2 isoform 3 [Macaca mulatta]
Length = 625
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/293 (66%), Positives = 230/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 280 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 339
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 340 PILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 399
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 400 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 459
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL +VV VLK G P+F KAARQFLLKWS
Sbjct: 460 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWS 519
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 520 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 572
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 110/213 (51%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLVKTDSNSNQYGSEG--H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ + + GS H
Sbjct: 163 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSSLH 222
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T QT + QS +H D S+ P+FP DL L + T+ DV + +YR HC
Sbjct: 223 STPEQTMAA---QSQHHQQYIDVSHVFPEFPAPDLGSVLLQDGVTLHDVKALQLVYRRHC 279
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 280 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 339
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 340 PILRWMRSCDHILYQALVEILIPDVLRPVPSTL 372
>gi|402903899|ref|XP_003914792.1| PREDICTED: DNA-binding protein RFX2 isoform 2 [Papio anubis]
Length = 723
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/293 (66%), Positives = 230/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 378 EATVDVVMNLQFHYIEKLWFAFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 437
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 438 PILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 497
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 498 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 557
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL +VV VLK G P+F KAARQFLLKWS
Sbjct: 558 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWS 617
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 618 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 670
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 110/213 (51%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLVKTDSNSNQYGSEG--H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ + + GS H
Sbjct: 261 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSSLH 320
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T QT + QS +H D S+ P+FP DL L + T+ DV + +YR HC
Sbjct: 321 STPEQTMAA---QSQHHQQYIDVSHVFPEFPAPDLGSVLLQDGVTLHDVKALQLVYRRHC 377
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 378 EATVDVVMNLQFHYIEKLWFAFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 437
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 438 PILRWMRSCDHILYQALVEILIPDVLRPVPSTL 470
>gi|193785851|dbj|BAG51286.1| unnamed protein product [Homo sapiens]
Length = 653
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/293 (66%), Positives = 230/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 308 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 367
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 368 PILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 427
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 428 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 487
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL +VV VLK G P+F KAARQFLLKWS
Sbjct: 488 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWS 547
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 548 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 600
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 112/213 (52%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLV-KTDSNSNQYGSEG-H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ KTDS + G H
Sbjct: 191 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSGLH 250
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T QT + QS +H D S+ P+FP DL L + T+ DV + +YR HC
Sbjct: 251 STPEQTMAV---QSQHHQQYIDVSHVFPEFPAPDLGSFLLQDGVTLHDVKALQLVYRRHC 307
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 308 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 367
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 368 PILRWMRSCDHILYQALVEILIPDVLRPVPSTL 400
>gi|355755359|gb|EHH59106.1| Regulatory factor X 2 [Macaca fascicularis]
Length = 678
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 194/289 (67%), Positives = 227/289 (78%), Gaps = 8/289 (2%)
Query: 220 DAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCVPVQA 271
D ++ L F IE LW FW S+ +++ DE E L K KL L +C P+
Sbjct: 338 DVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCDPILR 397
Query: 272 FVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKV 331
++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I KV
Sbjct: 398 WMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVIQTKV 457
Query: 332 TAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDA 391
V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVCQC+
Sbjct: 458 GVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQCEE 517
Query: 392 SLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSS 451
S+VQ+LE DFKLTLQQQ+SL++WA+WL +VV VLK G P+F KAARQFLLKWSFYSS
Sbjct: 518 SVVQRLEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWSFYSS 577
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
MVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 578 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 626
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 84/169 (49%), Gaps = 17/169 (10%)
Query: 67 KTDSNSNQYGSEG--HTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDC 124
KTDS + GS H+T QT + QS +H D S+ P+FP DL L +
Sbjct: 265 KTDSLGDS-GSHSSLHSTPEQTMAA---QSQHHQQYIDVSHVFPEFPAPDLGSVLLQDGV 320
Query: 125 TIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEE 176
T+ DV + +YR HCE D ++ L F IE LW FW S+ +++ DE E
Sbjct: 321 TLHDVKALQLVYRRHCE---DVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPE 377
Query: 177 EKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
L K KL L +C P+ ++R D + YQ LVE+LIPD TL
Sbjct: 378 GAVLPKDKLISLCQCDPILRWMRSCDHILYQALVEILIPDVLRPVPSTL 426
>gi|395512923|ref|XP_003760682.1| PREDICTED: DNA-binding protein RFX2 [Sarcophilus harrisii]
Length = 697
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/293 (66%), Positives = 228/293 (77%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQ----DNNNGDECEEEKY----LSKSKLFCLSKCV 267
+A LD ++ L F IE LW FW S+ D + EE++ + K KL L K
Sbjct: 354 EATLDVVMNLQFHYIEKLWLSFWSSKPPSGDGSTALPSTEEEHEVAVIPKDKLITLCKYD 413
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 414 PILKWMRNCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 473
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 474 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 533
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA WL NVV VLK G P+F KAARQFLLKWS
Sbjct: 534 QCEESMVQKLEQDFKLTLQQQSSLDQWATWLDNVVTQVLKHHAGSPSFPKAARQFLLKWS 593
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 594 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 646
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 112/233 (48%), Gaps = 31/233 (13%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRG 60
GNSKYHYYGIR+KPDSPLN + Y +R +P + P
Sbjct: 237 GNSKYHYYGIRLKPDSPLNRL--------QEDTQYMAMRQQPIH-------QKQRYRPAQ 281
Query: 61 KKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCL 120
K L ++ SNSN + + + A QS +H D S+ P+FP DL L
Sbjct: 282 KMDGLGESGSNSNLHATPEQSVAA--------QSQHHQQFIDVSHVFPEFPAPDLGSVFL 333
Query: 121 PEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQ----DNNNGDECEE 176
E T+ D+ T + +YR HCEA LD ++ L F IE LW FW S+ D + E
Sbjct: 334 QEGITVNDIKTLQLLYRRHCEATLDVVMNLQFHYIEKLWLSFWSSKPPSGDGSTALPSTE 393
Query: 177 EKY----LSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
E++ + K KL L K P+ ++R D + YQ LVE+LIPD TL
Sbjct: 394 EEHEVAVIPKDKLITLCKYDPILKWMRNCDHILYQALVEILIPDVLRPVPSTL 446
>gi|355716240|gb|AES05550.1| regulatory factor X, 3 [Mustela putorius furo]
Length = 332
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/294 (67%), Positives = 228/294 (77%), Gaps = 9/294 (3%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEEKYLSKSKLFCLSKC 266
+A LD +V L FS IE LW+ FWR + D E E L K+KL L K
Sbjct: 35 EAILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTLTESSNLSEIESRLPKAKLITLCKH 94
Query: 267 VPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEM 326
+ ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E WL+NAM PQ M
Sbjct: 95 ESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLEGWLSNAMNNIPQRM 154
Query: 327 INIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWV 386
I KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLNRVDF NVQEQASWV
Sbjct: 155 IQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLNRVDFANVQEQASWV 214
Query: 387 CQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKW 446
CQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+P+F KAARQFLLKW
Sbjct: 215 CQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGRPSFPKAARQFLLKW 274
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 275 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMG 328
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 68/122 (55%), Gaps = 11/122 (9%)
Query: 106 AIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRS 165
A+P+F E+++S LP+ T ED+ + +S+YREHCEA LD +V L FS IE LW+ FWR
Sbjct: 2 ALPEFGEVEISS--LPDGTTFEDIKSLQSLYREHCEAILDVVVNLQFSLIEKLWQTFWRY 59
Query: 166 QDNNNGDEC---------EEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPD 216
+ D E E L K+KL L K + ++ D YQ LVE+LIPD
Sbjct: 60 SPSTPTDGTTLTESSNLSEIESRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPD 119
Query: 217 AF 218
Sbjct: 120 VL 121
>gi|20306878|gb|AAH28579.1| Regulatory factor X, 2 (influences HLA class II expression) [Homo
sapiens]
gi|123997273|gb|ABM86238.1| regulatory factor X, 2 (influences HLA class II expression)
[synthetic construct]
gi|157928823|gb|ABW03697.1| regulatory factor X, 2 (influences HLA class II expression)
[synthetic construct]
Length = 723
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 194/293 (66%), Positives = 230/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 378 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 437
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 438 PILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 497
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 498 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 557
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL +VV VLK G P+F KAA+QFLLKWS
Sbjct: 558 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAAQQFLLKWS 617
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 618 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 670
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 112/213 (52%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLV-KTDSNSNQYGSEG-H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ KTDS + G H
Sbjct: 261 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSGLH 320
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T QT + QS +H D S+ P+FP DL L + T+ DV + +YR HC
Sbjct: 321 STPEQTMAV---QSQHHQQYIDVSHVFPEFPAPDLGSFLLQDGVTLHDVKALQLVYRRHC 377
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 378 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 437
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 438 PILRWMRSCDHILYQALVEILIPDVLRPVPSTL 470
>gi|348550690|ref|XP_003461164.1| PREDICTED: DNA-binding protein RFX2-like [Cavia porcellus]
Length = 721
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/293 (65%), Positives = 226/293 (77%), Gaps = 9/293 (3%)
Query: 217 AFLDAIVTLDFSTIESLWREFWRSQDNNNG---------DECEEEKYLSKSKLFCLSKCV 267
A LD + L F IE LW FW S+ + +E E + L + KL L KC
Sbjct: 379 ATLDVVTNLQFHYIEQLWLSFWNSKATSGDGPDSLPASEEEPEAQATLPQDKLISLCKCA 438
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ+++
Sbjct: 439 PILKWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVV 498
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QI+QML+DLNRVDF NVQEQASWVC
Sbjct: 499 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNASQISQMLSDLNRVDFANVQEQASWVC 558
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ +VQ+LE DFK+TLQQQ+SLE+WA WL +VV+ VLK G P+F KAARQFLLKWS
Sbjct: 559 QCEEGMVQRLEQDFKVTLQQQSSLEQWARWLDSVVSQVLKQHAGSPSFPKAARQFLLKWS 618
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 619 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 671
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 102/211 (48%), Gaps = 14/211 (6%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDE----NGSPRGKKYKLVKTDSNSNQYGSEGHTTAG 84
GNSKYHYYGIR+KPDSPLN + + P +K + + S H++
Sbjct: 261 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPLHQKPRYRPAQKTDSLGDSSSHSSLH 320
Query: 85 QTNSNP-SPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAF 143
T + QS +H D S+ P+FP +L L E T+ DV + YR HC+A
Sbjct: 321 STPEQAMATQSQHHQQYIDVSHVFPEFPVPELGSGLLQESITLRDVKALQLAYRRHCQAT 380
Query: 144 LDAIVTLDFSTIESLWREFWRSQDNNNG---------DECEEEKYLSKSKLFCLSKCVPV 194
LD + L F IE LW FW S+ + +E E + L + KL L KC P+
Sbjct: 381 LDVVTNLQFHYIEQLWLSFWNSKATSGDGPDSLPASEEEPEAQATLPQDKLISLCKCAPI 440
Query: 195 QAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
++R D + YQ LVE+LIPD TL
Sbjct: 441 LKWMRSCDHILYQALVEILIPDVLRPVPSTL 471
>gi|334326549|ref|XP_001376399.2| PREDICTED: DNA-binding protein RFX2-like [Monodelphis domestica]
Length = 697
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/293 (66%), Positives = 227/293 (77%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNN--------NGDECEEEKYLSKSKLFCLSKCV 267
+A LD ++ L F IE LW FW S+ + + +E E + K KL L K
Sbjct: 354 EATLDVVMNLQFHYIEKLWLSFWSSKPPSGEGSTALPSSEEEHEVTVIPKDKLITLCKYD 413
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 414 PILKWMRNCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQII 473
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 474 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 533
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA WL NVV VLK G P+F KAARQFLLKWS
Sbjct: 534 QCEESVVQKLEQDFKLTLQQQSSLDQWATWLDNVVTQVLKHHAGSPSFPKAARQFLLKWS 593
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 594 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 646
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 111/233 (47%), Gaps = 31/233 (13%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRG 60
GNSKYHYYGIR+KPDSPLN + Y +R +P + P
Sbjct: 237 GNSKYHYYGIRLKPDSPLNRL--------QEDTQYMAMRQQPIH-------QKQRYRPAQ 281
Query: 61 KKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCL 120
K L ++ SNSN + + + A QS +H D S+ P+FP DL L
Sbjct: 282 KMDGLGESGSNSNLHATPEQSVAA--------QSQHHQQFIDVSHVFPEFPAPDLGSVFL 333
Query: 121 PEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNN--------NGD 172
E T+ D+ T + +YR HCEA LD ++ L F IE LW FW S+ + + +
Sbjct: 334 QEGITVNDIKTLQLLYRRHCEATLDVVMNLQFHYIEKLWLSFWSSKPPSGEGSTALPSSE 393
Query: 173 ECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
E E + K KL L K P+ ++R D + YQ LVE+LIPD TL
Sbjct: 394 EEHEVTVIPKDKLITLCKYDPILKWMRNCDHILYQALVEILIPDVLRPVPSTL 446
>gi|221044528|dbj|BAH13941.1| unnamed protein product [Homo sapiens]
Length = 510
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/293 (66%), Positives = 230/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 165 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 224
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 225 PILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 284
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 285 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 344
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL +VV VLK G P+F KAARQFLLKWS
Sbjct: 345 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWS 404
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 405 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 457
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 110/212 (51%), Gaps = 19/212 (8%)
Query: 30 NSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLV-KTDSNSNQYGSEG-HT 81
NSKYHYY IR+KPDSPLN + + + R + +Y+ KTDS + G H+
Sbjct: 49 NSKYHYYRIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSGLHS 108
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QT + QS +H D S+ P+FP DL L + T+ DV + +YR HCE
Sbjct: 109 TPEQTMAV---QSQHHQQYIDVSHVFPEFPAPDLGSFLLQDGVTLHDVKALQLVYRRHCE 165
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCVP 193
A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C P
Sbjct: 166 ATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCDP 225
Query: 194 VQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
+ ++R D + YQ LVE+LIPD TL
Sbjct: 226 ILRWMRSCDHILYQALVEILIPDVLRPVPSTL 257
>gi|363743679|ref|XP_003642893.1| PREDICTED: DNA-binding protein RFX2 isoform 1 [Gallus gallus]
Length = 700
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/292 (66%), Positives = 226/292 (77%), Gaps = 7/292 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR----SQDNNNG---DECEEEKYLSKSKLFCLSKCVP 268
+A LD ++ L F IE LW+ FW S D + E E E L K KL L K P
Sbjct: 358 EATLDVVMNLQFHYIEKLWQSFWSPKTPSSDGSAALPSSEEEHEGTLPKDKLITLCKYEP 417
Query: 269 VQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMIN 328
+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WL NAM P +++
Sbjct: 418 ILKWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLMNAMSEFPPQIVQ 477
Query: 329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQ 388
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVCQ
Sbjct: 478 TKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQ 537
Query: 389 CDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSF 448
C+ +VQ+LE DFKLTLQQQ+SL++WA+WL NVV VLK EG P+F KAARQFLLKWSF
Sbjct: 538 CEEGMVQKLEQDFKLTLQQQSSLDQWASWLDNVVTQVLKHHEGSPSFPKAARQFLLKWSF 597
Query: 449 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 598 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMG 649
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 109/212 (51%), Gaps = 18/212 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYKLVKTDSNSNQYGSEG--H 80
GNSKYHYYGIR+KP+SPLN + + + R ++Y+ + + GS H
Sbjct: 241 GNSKYHYYGIRLKPESPLNRLQEDTQYMAMRQQPIHQKQRYRPAQKMDGMAEAGSNSSLH 300
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
TT Q+ + QS +H D ++ P+FP DL L E T+ DV T + +YR HC
Sbjct: 301 TTPEQSVAA---QSQHHQQFIDVTHVFPEFPAPDLGNVLLQEGVTMNDVKTLQLLYRRHC 357
Query: 141 EAFLDAIVTLDFSTIESLWREFWR----SQDNNNG---DECEEEKYLSKSKLFCLSKCVP 193
EA LD ++ L F IE LW+ FW S D + E E E L K KL L K P
Sbjct: 358 EATLDVVMNLQFHYIEKLWQSFWSPKTPSSDGSAALPSSEEEHEGTLPKDKLITLCKYEP 417
Query: 194 VQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
+ ++R D + YQ LVE+LIPD TL
Sbjct: 418 ILKWMRSCDHILYQALVEILIPDVLRPVPSTL 449
>gi|332851943|ref|XP_512310.3| PREDICTED: DNA-binding protein RFX2 isoform 2 [Pan troglodytes]
Length = 547
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/293 (66%), Positives = 230/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 202 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 261
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 262 PILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 321
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 322 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 381
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL +VV VLK G P+F KAARQFLLKWS
Sbjct: 382 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWS 441
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 442 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 494
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 112/213 (52%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLV-KTDSNSNQYGSEG-H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ KTDS + G H
Sbjct: 85 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSGLH 144
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T QT + QS +H D S+ P+FP DL L + T+ DV + +YR HC
Sbjct: 145 STPEQTMA---VQSQHHQQYIDVSHVFPEFPAPDLGSVLLQDGVTLHDVKALQLVYRRHC 201
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 202 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 261
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 262 PILRWMRSCDHILYQALVEILIPDVLRPVPSTL 294
>gi|221044192|dbj|BAH13773.1| unnamed protein product [Homo sapiens]
Length = 474
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/293 (66%), Positives = 230/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 129 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 188
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 189 PILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 248
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 249 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 308
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL +VV VLK G P+F KAARQFLLKWS
Sbjct: 309 QCEVSVVQRLEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWS 368
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 369 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 421
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 112/213 (52%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLV-KTDSNSNQYGSEG-H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ KTDS + G H
Sbjct: 12 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSGLH 71
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T QT + QS +H D S+ P+FP DL L + T+ DV + +YR HC
Sbjct: 72 STPEQTMAV---QSQHHQQYIDVSHVFPEFPAPDLGSFLLQDGVTLHDVKALQLVYRRHC 128
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 129 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 188
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 189 PILRWMRSCDHILYQALVEILIPDVLRPVPSTL 221
>gi|363743677|ref|XP_418212.3| PREDICTED: DNA-binding protein RFX2 isoform 2 [Gallus gallus]
Length = 725
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/292 (66%), Positives = 226/292 (77%), Gaps = 7/292 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR----SQDNNNG---DECEEEKYLSKSKLFCLSKCVP 268
+A LD ++ L F IE LW+ FW S D + E E E L K KL L K P
Sbjct: 383 EATLDVVMNLQFHYIEKLWQSFWSPKTPSSDGSAALPSSEEEHEGTLPKDKLITLCKYEP 442
Query: 269 VQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMIN 328
+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WL NAM P +++
Sbjct: 443 ILKWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLMNAMSEFPPQIVQ 502
Query: 329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQ 388
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVCQ
Sbjct: 503 TKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQ 562
Query: 389 CDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSF 448
C+ +VQ+LE DFKLTLQQQ+SL++WA+WL NVV VLK EG P+F KAARQFLLKWSF
Sbjct: 563 CEEGMVQKLEQDFKLTLQQQSSLDQWASWLDNVVTQVLKHHEGSPSFPKAARQFLLKWSF 622
Query: 449 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 623 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMG 674
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 109/212 (51%), Gaps = 18/212 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYKLVKTDSNSNQYGSEG--H 80
GNSKYHYYGIR+KP+SPLN + + + R ++Y+ + + GS H
Sbjct: 266 GNSKYHYYGIRLKPESPLNRLQEDTQYMAMRQQPIHQKQRYRPAQKMDGMAEAGSNSSLH 325
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
TT Q+ + QS +H D ++ P+FP DL L E T+ DV T + +YR HC
Sbjct: 326 TTPEQSVA---AQSQHHQQFIDVTHVFPEFPAPDLGNVLLQEGVTMNDVKTLQLLYRRHC 382
Query: 141 EAFLDAIVTLDFSTIESLWREFWR----SQDNNNG---DECEEEKYLSKSKLFCLSKCVP 193
EA LD ++ L F IE LW+ FW S D + E E E L K KL L K P
Sbjct: 383 EATLDVVMNLQFHYIEKLWQSFWSPKTPSSDGSAALPSSEEEHEGTLPKDKLITLCKYEP 442
Query: 194 VQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
+ ++R D + YQ LVE+LIPD TL
Sbjct: 443 ILKWMRSCDHILYQALVEILIPDVLRPVPSTL 474
>gi|395850947|ref|XP_003798033.1| PREDICTED: DNA-binding protein RFX2 [Otolemur garnettii]
Length = 723
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/293 (66%), Positives = 228/293 (77%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A LD ++ L F IE LW FW S+ +++ DE E L K KL L K
Sbjct: 378 EATLDVVMNLQFHYIEKLWLSFWNSKASSSDGPTPLPASDEEPEGTVLPKDKLISLCKHD 437
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 438 SILKWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 497
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 498 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 557
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL NVV VLK G P+F KAARQFLLKWS
Sbjct: 558 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDNVVTQVLKQHAGSPSFPKAARQFLLKWS 617
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 618 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 670
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 109/213 (51%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLV-KTDS-NSNQYGSEGH 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ KTDS N S H
Sbjct: 261 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPLHQKPRYRPAQKTDSLGDNGSHSSLH 320
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T Q + QS +H D S+ PDFP DL L E T+ DV + YR+HC
Sbjct: 321 STPEQAMAA---QSQHHQQYIDVSHVFPDFPAPDLDSVLLQESLTLHDVKALQLAYRQHC 377
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA LD ++ L F IE LW FW S+ +++ DE E L K KL L K
Sbjct: 378 EATLDVVMNLQFHYIEKLWLSFWNSKASSSDGPTPLPASDEEPEGTVLPKDKLISLCKHD 437
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
+ ++R D + YQ LVE+LIPD TL
Sbjct: 438 SILKWMRSCDHILYQALVEILIPDVLRPVPSTL 470
>gi|301791066|ref|XP_002930530.1| PREDICTED: DNA-binding protein RFX2-like [Ailuropoda melanoleuca]
Length = 665
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/292 (66%), Positives = 227/292 (77%), Gaps = 8/292 (2%)
Query: 217 AFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCVP 268
A LD +V L F IE LW FW S+ ++ D E L K KL L KC P
Sbjct: 322 ATLDVVVNLQFHYIEKLWLSFWNSKASSGDGPASLPASDGDPEGAVLPKDKLVSLCKCEP 381
Query: 269 VQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMIN 328
+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM+ PQ +I
Sbjct: 382 ILKWMRNCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMRDFPQRVIQ 441
Query: 329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQ 388
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVCQ
Sbjct: 442 TKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQ 501
Query: 389 CDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSF 448
C+ S+VQ+LE DFK+TLQ+Q+SL++WA+WL +VV VLK G P+F KAARQFLLKWSF
Sbjct: 502 CEESVVQRLEQDFKVTLQRQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWSF 561
Query: 449 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 562 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 613
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 110/233 (47%), Gaps = 32/233 (13%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRG 60
GNSKYHYYGIR+KPDSPLN + Y +R +P + PR
Sbjct: 205 GNSKYHYYGIRLKPDSPLNRL--------QEDTQYMAMRQQP-----------MHQKPRY 245
Query: 61 KKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCL 120
+ + + +S +GS H+T Q + QS +H D S+ P+FP DL L
Sbjct: 246 RPAQKTDSLGDSGSHGSL-HSTPEQAMAA---QSQHHQQYIDVSHVFPEFPAPDLGSVLL 301
Query: 121 PEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GD 172
E T+ D+ + +YR H A LD +V L F IE LW FW S+ ++ D
Sbjct: 302 QESITLHDIKALQLVYRRHW-ATLDVVVNLQFHYIEKLWLSFWNSKASSGDGPASLPASD 360
Query: 173 ECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
E L K KL L KC P+ ++R D + YQ LVE+LIPD TL
Sbjct: 361 GDPEGAVLPKDKLVSLCKCEPILKWMRNCDHILYQALVEILIPDVLRPVPSTL 413
>gi|281347533|gb|EFB23117.1| hypothetical protein PANDA_021003 [Ailuropoda melanoleuca]
Length = 662
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/292 (66%), Positives = 227/292 (77%), Gaps = 8/292 (2%)
Query: 217 AFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCVP 268
A LD +V L F IE LW FW S+ ++ D E L K KL L KC P
Sbjct: 319 ATLDVVVNLQFHYIEKLWLSFWNSKASSGDGPASLPASDGDPEGAVLPKDKLVSLCKCEP 378
Query: 269 VQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMIN 328
+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM+ PQ +I
Sbjct: 379 ILKWMRNCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMRDFPQRVIQ 438
Query: 329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQ 388
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVCQ
Sbjct: 439 TKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQ 498
Query: 389 CDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSF 448
C+ S+VQ+LE DFK+TLQ+Q+SL++WA+WL +VV VLK G P+F KAARQFLLKWSF
Sbjct: 499 CEESVVQRLEQDFKVTLQRQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWSF 558
Query: 449 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 559 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 610
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 110/233 (47%), Gaps = 32/233 (13%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRG 60
GNSKYHYYGIR+KPDSPLN + Y +R +P + PR
Sbjct: 202 GNSKYHYYGIRLKPDSPLNRL--------QEDTQYMAMRQQP-----------MHQKPRY 242
Query: 61 KKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCL 120
+ + + +S +GS H+T Q + QS +H D S+ P+FP DL L
Sbjct: 243 RPAQKTDSLGDSGSHGSL-HSTPEQAMAA---QSQHHQQYIDVSHVFPEFPAPDLGSVLL 298
Query: 121 PEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GD 172
E T+ D+ + +YR H A LD +V L F IE LW FW S+ ++ D
Sbjct: 299 QESITLHDIKALQLVYRRHW-ATLDVVVNLQFHYIEKLWLSFWNSKASSGDGPASLPASD 357
Query: 173 ECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
E L K KL L KC P+ ++R D + YQ LVE+LIPD TL
Sbjct: 358 GDPEGAVLPKDKLVSLCKCEPILKWMRNCDHILYQALVEILIPDVLRPVPSTL 410
>gi|61651714|ref|NP_001013296.1| DNA-binding protein RFX2 [Danio rerio]
gi|82178869|sp|Q5EAP5.1|RFX2_DANRE RecName: Full=DNA-binding protein RFX2; AltName: Full=Regulatory
factor X 2
gi|59861814|gb|AAH90314.1| Regulatory factor X, 2 (influences HLA class II expression) [Danio
rerio]
Length = 734
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/294 (65%), Positives = 230/294 (78%), Gaps = 9/294 (3%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDN---------NNGDECEEEKYLSKSKLFCLSKC 266
+A LD ++ L F IE LW+ FW S N+ ++ E+ + + KL L K
Sbjct: 385 EATLDVVMNLQFHLIEKLWQTFWHSTAPSSDGATTIPNSEEDVEDIRGFPRDKLITLCKY 444
Query: 267 VPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEM 326
P++ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLT+AM P E+
Sbjct: 445 EPIKQWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTSAMTNFPPEI 504
Query: 327 INIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWV 386
I+ K V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWV
Sbjct: 505 ISTKAAVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWV 564
Query: 387 CQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKW 446
CQCD S+VQ+LE DFK TLQQQ+SL++WA WL NVVN VLKP++G +F +AARQFLLKW
Sbjct: 565 CQCDESVVQRLELDFKATLQQQSSLDQWAAWLDNVVNQVLKPYDGSLSFPRAARQFLLKW 624
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 625 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMG 678
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 107/213 (50%), Gaps = 16/213 (7%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDE----NGSPRGKKYKLV---KTDSNSNQYGSEGHT 81
GNSKYHYYGIR+KPDSPLN + + +P +K + K D + S
Sbjct: 266 GNSKYHYYGIRLKPDSPLNRMQEDTQYMAMRQTPVHQKQRFKPFHKMDGMGDSLNSGSQH 325
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
+ + + Q +H D S+ +P FP +DL LPE ++ DV +S YR HCE
Sbjct: 326 LSSTPEQSVAAQCQHHQQYIDVSHVLPPFPSLDLGSCPLPESISMTDVKKLQSSYRIHCE 385
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQD---------NNNGDECEEEKYLSKSKLFCLSKCV 192
A LD ++ L F IE LW+ FW S N+ ++ E+ + + KL L K
Sbjct: 386 ATLDVVMNLQFHLIEKLWQTFWHSTAPSSDGATTIPNSEEDVEDIRGFPRDKLITLCKYE 445
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P++ ++R D + YQ LVE+LIPD TL
Sbjct: 446 PIKQWMRSCDHILYQALVEILIPDVLRPVPSTL 478
>gi|301622686|ref|XP_002940666.1| PREDICTED: LOW QUALITY PROTEIN: MHC class II regulatory factor
RFX1-like [Xenopus (Silurana) tropicalis]
Length = 957
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/294 (66%), Positives = 228/294 (77%), Gaps = 9/294 (3%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC-------EEEKYLSKSKLFCLSKCVP 268
+A +D +V L F+ +E+LW+ FWR + D E EK L K L LSK P
Sbjct: 493 EAIVDVVVNLQFTLVETLWKTFWRFNQTQHSDSTMXVPIDDEAEKRLPKDCLVLLSKYEP 552
Query: 269 VQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMIN 328
+ + R D L YQ LVE LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+
Sbjct: 553 LLKWSRDCDHLLYQVLVETLIPDVLRPIPSALTQAIRNFAKSLESWLTSAMMNIPEEMVR 612
Query: 329 IKVTAVG--AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWV 386
+KV +V AFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWV
Sbjct: 613 VKVGSVSCLAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFTNVQEQASWV 672
Query: 387 CQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKW 446
C+C +VQ+LE DFKLTLQQQ+SLE+WA WL +VV+ VLKP++G P F KAA+ FLLKW
Sbjct: 673 CRCADRVVQRLEQDFKLTLQQQSSLEQWAEWLDSVVSQVLKPYQGSPGFPKAAKLFLLKW 732
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G
Sbjct: 733 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQARGETPIAVMG 786
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 105/204 (51%), Gaps = 16/204 (7%)
Query: 29 GNSKYHYYGIRVKPDSPL-------NNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHT 81
GNSKYHYYG+R+K SPL ++ + + S + + + K + SN G
Sbjct: 376 GNSKYHYYGLRIKASSPLLRLMEDQQHLAMRQQPFSQKQRLKTVQKMEGMSNGVGGSQQQ 435
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
+G S+ S Q + D S +P+F E+DL LP+ T+ +V F+ +YREHCE
Sbjct: 436 ASG--LSDISAQVQQYQQFLDASKTLPEFAEMDLQGKPLPDGVTLANVKAFQLLYREHCE 493
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC-------EEEKYLSKSKLFCLSKCVPV 194
A +D +V L F+ +E+LW+ FWR + D E EK L K L LSK P+
Sbjct: 494 AIVDVVVNLQFTLVETLWKTFWRFNQTQHSDSTMXVPIDDEAEKRLPKDCLVLLSKYEPL 553
Query: 195 QAFVRRVDFLFYQNLVEVLIPDAF 218
+ R D L YQ LVE LIPD
Sbjct: 554 LKWSRDCDHLLYQVLVETLIPDVL 577
>gi|291236416|ref|XP_002738135.1| PREDICTED: regulatory factor X3-like, partial [Saccoglossus
kowalevskii]
Length = 264
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/254 (75%), Positives = 217/254 (85%)
Query: 248 ECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNF 307
E E EK LSK KL+ L K PV +++ D + YQ LVEVLIPDVLRPIP +LT +IRNF
Sbjct: 1 ENEPEKRLSKVKLYALCKSDPVLRYLQHYDHMLYQGLVEVLIPDVLRPIPSALTQAIRNF 60
Query: 308 AKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQM 367
AK +E WL N MQG PQEMI++K+ AV AFAQ LRRYTSLNHLAQAARAVLQNS+QI+QM
Sbjct: 61 AKSLEGWLKNGMQGVPQEMISVKLGAVSAFAQTLRRYTSLNHLAQAARAVLQNSSQISQM 120
Query: 368 LTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLK 427
L+DLNRVDF NVQEQASWVCQCD +VQ+LE DFK+TLQ QN+LE+WA WL+ VVN VLK
Sbjct: 121 LSDLNRVDFANVQEQASWVCQCDDQVVQRLEQDFKMTLQNQNTLEQWAIWLEGVVNQVLK 180
Query: 428 PFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQV 487
P EG+P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEH+V
Sbjct: 181 PHEGQPDFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHKV 240
Query: 488 ALATGETPIAVIGS 501
A ATGETPIAV+ S
Sbjct: 241 AAATGETPIAVMES 254
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 29/46 (63%)
Query: 173 ECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
E E EK LSK KL+ L K PV +++ D + YQ LVEVLIPD
Sbjct: 1 ENEPEKRLSKVKLYALCKSDPVLRYLQHYDHMLYQGLVEVLIPDVL 46
>gi|47222197|emb|CAG11623.1| unnamed protein product [Tetraodon nigroviridis]
Length = 849
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 250/580 (43%), Positives = 300/580 (51%), Gaps = 159/580 (27%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLS-------- 52
GNSKYHYYGIRVKPDSPLN + E+ + KP S + P S
Sbjct: 297 GNSKYHYYGIRVKPDSPLNRL---QEDTQYMAMRQQPVHQKPRSAPLSFPPSMFVASEDH 353
Query: 53 ------------DENGSPRGKKYK-LVKTDSNSNQYGSEGHTTAGQTNSNPSPQSGNHNF 99
E S ++K L K D S+ +G + + QS +H
Sbjct: 354 LVESLRFLVFSPPEPASSWVCRFKPLQKVDGMSDSVCGSSQHCSGTPEQSVAAQSQHHQQ 413
Query: 100 LGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLW 159
D S+ +P FP S D P+ + + I D + +L+
Sbjct: 414 YIDTSHTLPSFP----SPDVSPQ-------------------SLPERITLGDIGKLRTLY 450
Query: 160 REFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFL 219
R D CE A L
Sbjct: 451 R-----------DHCE-----------------------------------------ATL 458
Query: 220 DAIVTLDFSTIESLWREFWR----SQDNN---NGDECEEEKYLSKSKLFCLSKCVPVQAF 272
D ++ L F IE LW+ FW S D + N D+ E E + + KL L K PV+ +
Sbjct: 459 DVVMNLQFHYIEKLWQTFWYATAPSSDGSTAINSDD-EAEGAIPREKLVALCKYEPVRVW 517
Query: 273 VRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVT 332
+R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQE+I KV
Sbjct: 518 MRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSNFPQEIIRTKVA 577
Query: 333 AVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNV------------- 379
V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NV
Sbjct: 578 VVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQVNLPAIFCPARS 637
Query: 380 ------------QEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLK 427
QEQASWVCQCD S+VQ+LE DFK+TLQQQ+SL++WA WL NVV VLK
Sbjct: 638 VAPAVSTGMRVQQEQASWVCQCDESVVQRLEQDFKVTLQQQSSLDQWATWLDNVVTQVLK 697
Query: 428 PFEGKPNFTKAARQFLLKWSFY---------------------------SSMVIRDLTLR 460
P +G +F KAARQFLLKWSFY SSMVIRDLTLR
Sbjct: 698 PHQGSRSFPKAARQFLLKWSFYRYRPLPSEATPPQFLPPICHLFLWFPDSSMVIRDLTLR 757
Query: 461 SAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
SAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 758 SAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMG 797
>gi|402897525|ref|XP_003911805.1| PREDICTED: transcription factor RFX3 [Papio anubis]
Length = 741
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 229/492 (46%), Positives = 280/492 (56%), Gaps = 109/492 (22%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP + + + N
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSASGTYLLN------ 461
Query: 313 SWLTNAMQGCP----QEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQML 368
+ CP + +V AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML
Sbjct: 462 ------VYNCPLYYYGALGTEEVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQML 515
Query: 369 TDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKP 428
DLNRVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP
Sbjct: 516 NDLNRVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKP 575
Query: 429 FEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA 488
+EG+P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA
Sbjct: 576 YEGRPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVA 635
Query: 489 LATGETPIAVIG 500
ATGETPIAV+G
Sbjct: 636 QATGETPIAVMG 647
>gi|444511961|gb|ELV10011.1| DNA-binding protein RFX2 [Tupaia chinensis]
Length = 652
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/319 (62%), Positives = 237/319 (74%), Gaps = 11/319 (3%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A LD ++ L F IE LW FW ++ +++ +E E L K KL L K
Sbjct: 308 EATLDVVMNLQFHYIEKLWLSFWNAKASSSDGSPSLPASEEEPEGAVLPKDKLITLCKYD 367
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM P+++I
Sbjct: 368 PILKWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPRQVI 427
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 428 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 487
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA WL +VV VL+ G P+F KAA QFLLKWS
Sbjct: 488 QCEESVVQRLEQDFKLTLQQQSSLDQWARWLDSVVTRVLEQHAGSPSFPKAAHQFLLKWS 547
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPV 507
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G E N +
Sbjct: 548 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMG--EFNDL 605
Query: 508 ES-SQNPMDNGLYAHGQNN 525
S S +D G GQ
Sbjct: 606 ASLSLTLLDKGDIGDGQGG 624
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 104/210 (49%), Gaps = 13/210 (6%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDE----NGSPRGKKYKLVKTDSNSNQYGSEGHTTAG 84
GNSKYHYYGIR+KPDSPLN + + P +K + + S H++
Sbjct: 191 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPLHQKPRYRPAQKTDSLGDSSSHSSLH 250
Query: 85 QTNSNP-SPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAF 143
T + QS +H D S+ P+FP DL L E T+ D+ + +YR HCEA
Sbjct: 251 STPEQAMAVQSQHHQQYIDVSHVFPEFPAPDLGGILLQESVTLHDIKALQLVYRRHCEAT 310
Query: 144 LDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCVPVQ 195
LD ++ L F IE LW FW ++ +++ +E E L K KL L K P+
Sbjct: 311 LDVVMNLQFHYIEKLWLSFWNAKASSSDGSPSLPASEEEPEGAVLPKDKLITLCKYDPIL 370
Query: 196 AFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
++R D + YQ LVE+LIPD TL
Sbjct: 371 KWMRSCDHILYQALVEILIPDVLRPVPSTL 400
>gi|351712185|gb|EHB15104.1| DNA-binding protein RFX2 [Heterocephalus glaber]
Length = 827
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/311 (62%), Positives = 231/311 (74%), Gaps = 11/311 (3%)
Query: 204 LFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDN---------NNGDECEEEKY 254
L Y+ EV P + F IE LW FW S+ + +E E +
Sbjct: 353 LVYRQHCEVTTPAP--GGLGGTQFHYIEKLWLSFWNSKATCSDGPTSLPASDEEPEGQAV 410
Query: 255 LSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESW 314
L + KL L KC P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E W
Sbjct: 411 LPQDKLISLCKCTPILKWMRNCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGW 470
Query: 315 LTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRV 374
LTNAM PQ++I KV V AFAQ LRRYTSLNHLAQAARAVLQN++QI+QML+DLNRV
Sbjct: 471 LTNAMSDFPQQVIQTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNASQISQMLSDLNRV 530
Query: 375 DFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPN 434
DF NVQEQASWVCQC+ +VQ+LE DFK+TLQQQ+SLE+WA WL VV+ VLK G P+
Sbjct: 531 DFANVQEQASWVCQCEEGVVQRLEQDFKVTLQQQSSLEQWARWLDGVVSQVLKQHAGSPS 590
Query: 435 FTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGET 494
F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGET
Sbjct: 591 FPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGET 650
Query: 495 PIAVIGSKESN 505
PIAV+G ++++
Sbjct: 651 PIAVMGEEQAS 661
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/121 (79%), Positives = 108/121 (89%)
Query: 380 QEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAA 439
+EQASWVCQC+ +VQ+LE DFK+TLQQQ+SLE+WA WL VV+ VLK G P+F KAA
Sbjct: 657 EEQASWVCQCEEGVVQRLEQDFKVTLQQQSSLEQWARWLDGVVSQVLKQHAGSPSFPKAA 716
Query: 440 RQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVI 499
RQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+
Sbjct: 717 RQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVM 776
Query: 500 G 500
G
Sbjct: 777 G 777
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 109/238 (45%), Gaps = 41/238 (17%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRG 60
GNSKYHYYGIR+KPDSPLN + Y +R PL+ P
Sbjct: 247 GNSKYHYYGIRLKPDSPLNRL--------QEDTQYMAMR---QQPLHQKP---------- 285
Query: 61 KKYKLV-KTDSNSNQYGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDC 119
+Y+ KTD + S H+T Q + QS +H D S+ P+FP +L
Sbjct: 286 -RYRPAQKTDGLGD---SSLHSTPEQAMAT---QSQHHQQYIDVSHVFPEFPVPELGSTL 338
Query: 120 LPEDCTIEDVDTFRSIYREHCEAFLDAIVTL---DFSTIESLWREFWRSQDN-------- 168
L E T+ DV + +YR+HCE A L F IE LW FW S+
Sbjct: 339 LQESVTLRDVKALQLVYRQHCEVTTPAPGGLGGTQFHYIEKLWLSFWNSKATCSDGPTSL 398
Query: 169 -NNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
+ +E E + L + KL L KC P+ ++R D + YQ LVE+LIPD TL
Sbjct: 399 PASDEEPEGQAVLPQDKLISLCKCTPILKWMRNCDHILYQALVEILIPDVLRPVPSTL 456
>gi|292610026|ref|XP_682728.3| PREDICTED: MHC class II regulatory factor RFX1 [Danio rerio]
Length = 822
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/307 (64%), Positives = 227/307 (73%), Gaps = 8/307 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDN--NNGDEC----EEEKYLSKSKLFCLSKCVPV 269
+A LD +V L F+ +E+LW+ FWR + +N D E EK L KS L L K P+
Sbjct: 465 EAILDVMVNLQFTLVETLWKSFWRFSEGQTSNSDALDLHEESEKRLPKSVLVLLCKYEPI 524
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ R D L YQ+LV + IPDVLRPIP +LT +IRNFAK +ESWL+NAM P EM+NI
Sbjct: 525 INWTRECDNLLYQSLVGIFIPDVLRPIPSALTQAIRNFAKSLESWLSNAMIIMPDEMVNI 584
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
K GAFAQ LRRYTSLNHLAQAARAVLQN+ QI QML+DLNRVDF NVQEQASWVC C
Sbjct: 585 KKLCAGAFAQTLRRYTSLNHLAQAARAVLQNTAQITQMLSDLNRVDFTNVQEQASWVCGC 644
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQQLE DFK TLQ QNSLEEWA WL VV+ VLKP+ P F KAA+ FLLKWSFY
Sbjct: 645 EDGVVQQLERDFKQTLQNQNSLEEWAAWLNEVVSLVLKPYTNSPAFPKAAKLFLLKWSFY 704
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+ E +
Sbjct: 705 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMA--EFANLNR 762
Query: 510 SQNPMDN 516
SQ MD
Sbjct: 763 SQRSMDG 769
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 106/204 (51%), Gaps = 15/204 (7%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYK-------LVKTDSNSNQYG-SEGH 80
GNSKYHYYG+R+K +SPL+ + ++ + R + Y + K + +N G GH
Sbjct: 346 GNSKYHYYGLRIKSNSPLHRLVEDQQHLAMRQQPYSQKQRIKPVQKMEGLTNGMGLGAGH 405
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+ S FLGD S +P+FPE+ LP+ + V ++ +YREHC
Sbjct: 406 QQGAGLSDISSQVHQYQQFLGD-SRRLPEFPELKDDGKSLPDGLLPQYVHVYQLVYREHC 464
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDN--NNGDEC----EEEKYLSKSKLFCLSKCVPV 194
EA LD +V L F+ +E+LW+ FWR + +N D E EK L KS L L K P+
Sbjct: 465 EAILDVMVNLQFTLVETLWKSFWRFSEGQTSNSDALDLHEESEKRLPKSVLVLLCKYEPI 524
Query: 195 QAFVRRVDFLFYQNLVEVLIPDAF 218
+ R D L YQ+LV + IPD
Sbjct: 525 INWTRECDNLLYQSLVGIFIPDVL 548
>gi|353232952|emb|CCD80307.1| putative rfx transcription factor [Schistosoma mansoni]
Length = 1120
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 228/492 (46%), Positives = 297/492 (60%), Gaps = 77/492 (15%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEG----HTTAG 84
GNSKYHYYGIR+KP+SPLN+ + D S R K+ N+N Y G H+T+
Sbjct: 238 GNSKYHYYGIRIKPNSPLNHF-IEDAGFSLRHYPNYHHKSMLNNNNYIGSGNVSSHSTSQ 296
Query: 85 Q-----TNSNPSP-------QSGNHN--FLGDGSNAIPDFPEIDLSEDCLPEDCTI-EDV 129
TNS SP +G H+ FLG+ S+A+P +L E C + +V
Sbjct: 297 NIDSVTTNSITSPLLSSSGVGNGQHHAHFLGEASSALP-----NLDEICRSSGLPVPSEV 351
Query: 130 DTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLS 189
D + ++ L I T + S I E ++ +L+ LS
Sbjct: 352 DLPENSLNKN---RLKTIETSNISPIN--------------------EDVITFCRLYALS 388
Query: 190 KCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC 249
LDA+V LDF++IE++W+ FW +++ +
Sbjct: 389 AGY-------------------------MLDAVVNLDFTSIETVWKAFWCTEEVR---DS 420
Query: 250 EEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAK 309
++ LS+ +L+ L + F+R D FYQ+L EVLIP+VLRPIP +LT +IRNFAK
Sbjct: 421 RLKQSLSQERLYSLVSDPAILQFIRLYDHTFYQSLAEVLIPNVLRPIPPTLTQAIRNFAK 480
Query: 310 GVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLT 369
+E W+ A+QG ++IN+K++AV A AQ LRRYTSLNHLAQAARAVL+N+ QINQML
Sbjct: 481 SLEGWMRQAIQGLDTDLINLKISAVCALAQTLRRYTSLNHLAQAARAVLKNANQINQMLA 540
Query: 370 DLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPF 429
DLNRVDF+NVQEQASWVCQC S V QLE DFK LQ+ SLEEWA WL VV ++L+P
Sbjct: 541 DLNRVDFNNVQEQASWVCQCSDSTVSQLEHDFKRILQKHASLEEWAQWLDTVVTSILQPL 600
Query: 430 EGKP-NFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA 488
EG +T+AA Q +LKWSFYSSMVIRDLTLRSA+SFGSFHLIRLLYDEY+FYL+EH+VA
Sbjct: 601 EGNSLAYTRAAHQLVLKWSFYSSMVIRDLTLRSASSFGSFHLIRLLYDEYIFYLVEHKVA 660
Query: 489 LATGETPIAVIG 500
G TP+AV+G
Sbjct: 661 AHLGMTPVAVMG 672
>gi|410917261|ref|XP_003972105.1| PREDICTED: MHC class II regulatory factor RFX1-like [Takifugu
rubripes]
Length = 832
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 225/485 (46%), Positives = 283/485 (58%), Gaps = 90/485 (18%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENG------SPRGKKYKLVKTDSNSN-QYGSEGHT 81
GNSKYHYYG+R+K SPL + L DE P +K ++ N G+ G
Sbjct: 363 GNSKYHYYGLRIKSGSPL--LRLMDEQQHMAMRQQPFSQKNRIKPAQKNQGVANGTPGGM 420
Query: 82 TAGQTNS--NPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREH 139
Q + + S Q + D S +P F +I++ + LP+ I EH
Sbjct: 421 GPQQATALCDISAQLQQYQQFLDTSRPLPVFVDIEVQDRNLPD-----------GILLEH 469
Query: 140 CEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVR 199
+AF ++L+RE CE
Sbjct: 470 LKAF------------QALYRE-----------HCE------------------------ 482
Query: 200 RVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGD---ECEEEKYLS 256
A LD +V L F+ +E+LW+ FWR + + E EK L
Sbjct: 483 -----------------AILDVMVNLQFTLVETLWKSFWRFSEAESLSLYVHNESEKRLP 525
Query: 257 KSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLT 316
KS L L K PV + + D L YQ LV++LIP+VLRPIP +LT +IRNFAK +E+WLT
Sbjct: 526 KSCLVVLCKFEPVLCWTKECDNLLYQTLVDMLIPNVLRPIPSALTHAIRNFAKSLENWLT 585
Query: 317 NAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDF 376
AM P+EM+ +KV V +F+QMLRRYTSLNHLAQAA AVLQNS INQML+DLNRVDF
Sbjct: 586 GAMMNIPEEMVRVKVVCVNSFSQMLRRYTSLNHLAQAAHAVLQNSAHINQMLSDLNRVDF 645
Query: 377 HNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKP-NF 435
+NVQEQASWVCQC+ +V +L+ DFK+TL QQNSLE+WA+WL +VV+ VLKP+E P
Sbjct: 646 NNVQEQASWVCQCEDRVVLRLQQDFKMTLLQQNSLEQWASWLSSVVSQVLKPYEHNPVAL 705
Query: 436 TKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETP 495
KAA+ FLL WSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YL+EH+VA A TP
Sbjct: 706 PKAAKVFLLNWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLVEHRVAQAKVVTP 765
Query: 496 IAVIG 500
IAV+G
Sbjct: 766 IAVMG 770
>gi|432848274|ref|XP_004066264.1| PREDICTED: MHC class II regulatory factor RFX1-like [Oryzias
latipes]
Length = 877
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/303 (63%), Positives = 230/303 (75%), Gaps = 6/303 (1%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECE----EEKYLSKSKLFCLSKCVPVQA 271
+A LD ++ L F+ +E LW+ FWR ++NN + + E L KS L L K PV
Sbjct: 522 EAVLDVMINLQFNVVEMLWKSFWRFSESNNPESPDLPDDAENCLPKSLLVLLCKFEPVLL 581
Query: 272 FVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKV 331
+ R D L YQ LV+ LIPDVLRPIP +LT +IRNFAK +ESWLT AM P+EM+ IKV
Sbjct: 582 WTRWCDNLLYQALVDALIPDVLRPIPSALTQAIRNFAKNLESWLTGAMMNIPEEMVCIKV 641
Query: 332 TAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDA 391
V +F+Q LRRYTSLNHLAQAARAVLQNS QINQML+DLNRVDF NVQEQASWVCQC+
Sbjct: 642 VCVSSFSQTLRRYTSLNHLAQAARAVLQNSAQINQMLSDLNRVDFSNVQEQASWVCQCED 701
Query: 392 SLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKP-NFTKAARQFLLKWSFYS 450
+V++LE DFK TLQQQNSLE+WA+WL VV+ LKPFE P +KAA+ FLL WSFYS
Sbjct: 702 GVVRRLEQDFKATLQQQNSLEQWASWLDGVVSEALKPFEQNPAALSKAAKVFLLNWSFYS 761
Query: 451 SMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVESS 510
SMVIRDLTLRSAASFGSFHLIRLLYDEYM++L+EH+VA A GE P+AV+ ++ SN +S
Sbjct: 762 SMVIRDLTLRSAASFGSFHLIRLLYDEYMYFLVEHRVAQAKGEPPVAVM-AEFSNSAKSR 820
Query: 511 QNP 513
+P
Sbjct: 821 SSP 823
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 102/202 (50%), Gaps = 13/202 (6%)
Query: 29 GNSKYHYYGIRVKPDSPL-------NNIPLSDENGSPRGKKYKLVKTDSNSNQY-GSEGH 80
GNSKYHYYG+R+K SPL ++ + + S + + + K SN G G
Sbjct: 403 GNSKYHYYGLRIKSGSPLLRLMDEQQHMAMRQQPFSQKSRIKPVQKAPGLSNGIAGGIGQ 462
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
G + FL + S +P+F +IDL LP+ +E + FR +YREHC
Sbjct: 463 LQPGAPGDISTQVQQYQQFL-ETSRPLPEFVDIDLQGQSLPDGIQLEHLKVFRDLYREHC 521
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC----EEEKYLSKSKLFCLSKCVPVQA 196
EA LD ++ L F+ +E LW+ FWR ++NN + + E L KS L L K PV
Sbjct: 522 EAVLDVMINLQFNVVEMLWKSFWRFSESNNPESPDLPDDAENCLPKSLLVLLCKFEPVLL 581
Query: 197 FVRRVDFLFYQNLVEVLIPDAF 218
+ R D L YQ LV+ LIPD
Sbjct: 582 WTRWCDNLLYQALVDALIPDVL 603
>gi|47223867|emb|CAG06044.1| unnamed protein product [Tetraodon nigroviridis]
Length = 559
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 220/499 (44%), Positives = 288/499 (57%), Gaps = 81/499 (16%)
Query: 29 GNSKYHYYGIRVKPDSPL-------NNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHT 81
GNSKYHYYG+R+K SPL ++ + + S + + + K+ +N G+ G
Sbjct: 114 GNSKYHYYGLRIKSGSPLLRLMDEQQHMAMRQQPFSQKNRVKPVQKSQGLAN--GTPGGL 171
Query: 82 TAGQTNS--NPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREH 139
Q + + S Q + D S +P F I++ + LP+ +E H
Sbjct: 172 AQQQATALCDISAQLQQYQQFLDTSRPLPVFANIEVQDRDLPDGVLLE-----------H 220
Query: 140 CEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVR 199
+AF ++L+RE CE L++
Sbjct: 221 LKAF------------QALYRE-----------HCEVGPPPCPLGPPVLTQ--------- 248
Query: 200 RVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------- 249
+ V+ A LD +V L F+ +E+LW+ FWR +
Sbjct: 249 ---------KLSVISSQAVLDVMVNLQFTLVETLWKSFWRFSEAEIPQPVSVPTIIIVVA 299
Query: 250 -------EEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTS 302
E EK L K+ L L K PV + + D L YQ LV++LIP+VLRPIP +LT
Sbjct: 300 VHLCRHNESEKRLPKACLVVLCKFEPVLRWTKDCDNLLYQTLVDMLIPNVLRPIPSALTH 359
Query: 303 SIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNST 362
+IRN+AK +E+WLT A+ P+EM+ +KV V +F+QMLRRYTSLNHLAQAA AVLQNS
Sbjct: 360 AIRNYAKSLENWLTGALMNIPEEMVRVKVVCVNSFSQMLRRYTSLNHLAQAAHAVLQNSA 419
Query: 363 QINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVV 422
INQML+DLNRVDF+NVQEQASWVCQC+ +V +L+ DFK+TL QQNSLE+WA+WL VV
Sbjct: 420 HINQMLSDLNRVDFNNVQEQASWVCQCEDRVVLRLQQDFKMTLLQQNSLEQWASWLSGVV 479
Query: 423 NAVLKPFEGKP-NFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFY 481
+ VLKP+E P KAA+ FLL WSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYM+Y
Sbjct: 480 SQVLKPYEHNPVALPKAAKVFLLNWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYY 539
Query: 482 LIEHQVALATGETPIAVIG 500
L+EH+VA A TPIAV+G
Sbjct: 540 LVEHRVAQAKVVTPIAVMG 558
>gi|449491804|ref|XP_002192213.2| PREDICTED: DNA-binding protein RFX2 [Taeniopygia guttata]
Length = 712
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/279 (65%), Positives = 213/279 (76%), Gaps = 7/279 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN-------GDECEEEKYLSKSKLFCLSKCVP 268
+A LD ++ L F IE LW+ FW + + E E E L K KL L K P
Sbjct: 385 EATLDVVMHLQFHYIEKLWQSFWSPKAPPSDGPTALPSSEEEPEGTLPKDKLITLCKYEP 444
Query: 269 VQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMIN 328
+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WL NAM P +++
Sbjct: 445 ILKWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLMNAMSEFPPQVVQ 504
Query: 329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQ 388
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVCQ
Sbjct: 505 TKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQ 564
Query: 389 CDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSF 448
C+ +VQ+LE DFKLTLQQQ+SL++WA+WL NVV VLK EG P+F KAARQFLLKWSF
Sbjct: 565 CEEGMVQKLEQDFKLTLQQQSSLDQWASWLDNVVTQVLKHHEGSPSFPKAARQFLLKWSF 624
Query: 449 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQV 487
YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+V
Sbjct: 625 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRV 663
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 103/212 (48%), Gaps = 18/212 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
GNSKYHYYGIR+KP+SPLN + E+ + + + G +NS
Sbjct: 268 GNSKYHYYGIRLKPESPLNRL---QEDTQYMAMRQQPIHQKQRYRAAQKMDGMAEGASNS 324
Query: 89 NP--------SPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
NP + Q +H D ++ P+FP DLS L E T+ DV T + +YR HC
Sbjct: 325 NPHTTPEQSVAAQCQHHQQFIDVTHVFPEFPAPDLSNVLLQEGFTLNDVKTLQVLYRRHC 384
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN-------GDECEEEKYLSKSKLFCLSKCVP 193
EA LD ++ L F IE LW+ FW + + E E E L K KL L K P
Sbjct: 385 EATLDVVMHLQFHYIEKLWQSFWSPKAPPSDGPTALPSSEEEPEGTLPKDKLITLCKYEP 444
Query: 194 VQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
+ ++R D + YQ LVE+LIPD TL
Sbjct: 445 ILKWMRSCDHILYQALVEILIPDVLRPVPSTL 476
>gi|432855063|ref|XP_004068054.1| PREDICTED: DNA-binding protein RFX2-like [Oryzias latipes]
Length = 708
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 216/486 (44%), Positives = 269/486 (55%), Gaps = 115/486 (23%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R +++K L K DS S+
Sbjct: 271 GNSKYHYYGIRVKPDSPLNRLQEDTQYMAMRQQPVHQKQRFKPLQKVDSMSDSLCGSSQA 330
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
+ + QS +H D S+ +P FP +D+ LPE +
Sbjct: 331 CNSTPEQSVAAQSQHHQHYIDTSHTLPQFPPLDVGSQPLPERINMG-------------- 376
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++L+R D CEE
Sbjct: 377 ---------DIKKLKTLYR-----------DHCEET------------------------ 392
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFW-RSQDNNNGDEC------EEEKY 254
LD + L ++ LW+ FW + +++G + E
Sbjct: 393 -----------------LDMPINLSAHWVDKLWQTFWCSTAPSSDGSTSIPSSDDDMEGS 435
Query: 255 LSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESW 314
+ + KL L K PV+ ++R D + YQ LVEVLIPDVLRP+P +LT +IRNFAK +E W
Sbjct: 436 IPREKLVALCKYEPVRLWMRSCDHILYQALVEVLIPDVLRPVPSTLTQAIRNFAKSLEGW 495
Query: 315 LTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRV 374
LTNAM PQE++ KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNR
Sbjct: 496 LTNAMTSFPQEIVRTKVAVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNR- 554
Query: 375 DFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPN 434
DFK+TLQQQ+SL++WA WL NVV+ VLKP +G P+
Sbjct: 555 -------------------------DFKVTLQQQSSLDQWATWLDNVVSQVLKPHQGNPS 589
Query: 435 FTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGET 494
F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGET
Sbjct: 590 FPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGET 649
Query: 495 PIAVIG 500
PIAV+G
Sbjct: 650 PIAVMG 655
>gi|340373779|ref|XP_003385417.1| PREDICTED: DNA-binding protein RFX2-like [Amphimedon queenslandica]
Length = 747
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/288 (62%), Positives = 224/288 (77%), Gaps = 5/288 (1%)
Query: 216 DAFLDAIVTLDFSTIESLWREFW----RSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQA 271
+A LD + L F +E+LW+ FW RS + D+ +++ LS+ KLF L+ C P+
Sbjct: 422 EAILDVVANLQFQMVENLWQAFWVDTSRSSSDIQADD-DQDHRLSREKLFVLTSCQPLLD 480
Query: 272 FVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKV 331
++ D + YQ +V LI +VLRPIP +LT SIRNFAK +E+W+ + ++G P + + KV
Sbjct: 481 YLVACDHILYQCIVNFLISNVLRPIPATLTQSIRNFAKNLENWMNSCLEGYPVKCVQAKV 540
Query: 332 TAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDA 391
++V AF+Q LRRYTSLNHLAQAARAVLQN++QINQM+ DLNRVDF NVQEQA+WVCQCD
Sbjct: 541 SSVIAFSQTLRRYTSLNHLAQAARAVLQNASQINQMINDLNRVDFANVQEQAAWVCQCDE 600
Query: 392 SLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSS 451
+L +LE DFK TLQQQNSLE+WA WL+ VV VL+P E P + KAARQFLLKWSFYSS
Sbjct: 601 ALASRLEMDFKNTLQQQNSLEQWAVWLEGVVTTVLQPHEDTPEYPKAARQFLLKWSFYSS 660
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVI 499
MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE++VA ATG+TPIAV+
Sbjct: 661 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIENKVARATGKTPIAVM 708
>gi|449678816|ref|XP_002157607.2| PREDICTED: transcription factor RFX3-like [Hydra magnipapillata]
Length = 800
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/289 (60%), Positives = 223/289 (77%), Gaps = 4/289 (1%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRS---QDNNNGDECEEEKY-LSKSKLFCLSKCVPVQA 271
+A L+ I L F +E+LW+ F+RS D + E Y +SK+ L L K P+Q
Sbjct: 452 EALLEVISNLQFDLVEALWQAFYRSPAAADKTDNGTLESHDYSISKTMLIVLCKYKPMQE 511
Query: 272 FVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKV 331
F++ D+L YQ LV +L+PDVLR +P +LT +IRNFAK +E+ L +M P+E++NIKV
Sbjct: 512 FIKETDYLLYQKLVTLLVPDVLRAVPSTLTQAIRNFAKSLENMLIGSMSEMPKEIVNIKV 571
Query: 332 TAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDA 391
A AF+Q LRRYTSLNHLAQAARAVLQN QINQM +DLN+VDF+NVQEQ+SWVCQCD
Sbjct: 572 AAASAFSQTLRRYTSLNHLAQAARAVLQNPQQINQMWSDLNKVDFNNVQEQSSWVCQCDE 631
Query: 392 SLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSS 451
+L+Q+LE DFK TL QQ SLEEWA WL++VV+ VL+ +G+ ++ KAARQFLL WSFYSS
Sbjct: 632 ALIQKLEEDFKRTLSQQQSLEEWAQWLESVVSMVLEQHQGRDSYPKAARQFLLNWSFYSS 691
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
M+IRDLTLRSAASFGSFHLIRLLYDEYMFYLIE++VA TG++P++V+
Sbjct: 692 MIIRDLTLRSAASFGSFHLIRLLYDEYMFYLIENKVAAHTGKSPLSVMA 740
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 120/219 (54%), Gaps = 11/219 (5%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
GNSKYHYYGIRVKP+SPL+ + D + R + +T +++ + A TN+
Sbjct: 342 GNSKYHYYGIRVKPNSPLSRL-TDDTQVALRAQPVASKRTIGSASYDQTGARVEATSTNN 400
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIV 148
+ +LGD S +P+ P IDL+E LPE + DV +F + YR HCEA L+ I
Sbjct: 401 EGMTAASYQQYLGDTSEGLPEVPAIDLTE-SLPEGVSKLDVTSFGNYYRSHCEALLEVIS 459
Query: 149 TLDFSTIESLWREFWRS---QDNNNGDECEEEKY-LSKSKLFCLSKCVPVQAFVRRVDFL 204
L F +E+LW+ F+RS D + E Y +SK+ L L K P+Q F++ D+L
Sbjct: 460 NLQFDLVEALWQAFYRSPAAADKTDNGTLESHDYSISKTMLIVLCKYKPMQEFIKETDYL 519
Query: 205 FYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDN 243
YQ LV +L+PD L A+ ST+ R F +S +N
Sbjct: 520 LYQKLVTLLVPD-VLRAVP----STLTQAIRNFAKSLEN 553
>gi|358337343|dbj|GAA55712.1| regulatory factor X 1/2/3 [Clonorchis sinensis]
Length = 985
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 171/284 (60%), Positives = 213/284 (75%), Gaps = 4/284 (1%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LDA+V LDF+ IE++W+ FWR+++ + ++ L + +L+ L V FVR D
Sbjct: 421 MLDAVVNLDFTAIETVWKAFWRTEEVR---DSRLKQSLPQDRLYALVSDTSVLQFVRLYD 477
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
FYQ+L EVLIP+VLRPIP +LT +IRNFAK +E W+ A QG ++ +K++AV A
Sbjct: 478 HTFYQSLAEVLIPNVLRPIPHTLTQAIRNFAKSLEGWMRQATQGLDSTLVRLKLSAVSAL 537
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQL 397
AQ LRRYTSLNHLAQAAR VL+N QINQML DLNRVDF+NVQEQASWVCQC + V QL
Sbjct: 538 AQTLRRYTSLNHLAQAARTVLKNHNQINQMLADLNRVDFNNVQEQASWVCQCSDATVSQL 597
Query: 398 ESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKP-NFTKAARQFLLKWSFYSSMVIRD 456
E DFK L + SLEEWA WL VV+++L+P EG +T+AA Q +LKWSFYSSMVIRD
Sbjct: 598 EQDFKRILHKHASLEEWAQWLDTVVSSILQPLEGNSVAYTRAAHQLILKWSFYSSMVIRD 657
Query: 457 LTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
LTLRSAASFGSFHLIRLL+DEY+FYL+EH+VA G TP+AV+G
Sbjct: 658 LTLRSAASFGSFHLIRLLFDEYIFYLVEHKVAAHLGMTPVAVMG 701
>gi|426386831|ref|XP_004059884.1| PREDICTED: DNA-binding protein RFX2 [Gorilla gorilla gorilla]
Length = 928
Score = 358 bits (919), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 183/318 (57%), Positives = 219/318 (68%), Gaps = 33/318 (10%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 558 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 617
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 618 RILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 677
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 678 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 737
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAAR------- 440
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL +VV VLK G P F K
Sbjct: 738 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPTFPKVVSGTERAGL 797
Query: 441 -QFLLKWS-----------------FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL 482
+ W+ SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL
Sbjct: 798 PHLSVTWAQGLGSPSAPAVPSLCPLVPSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL 857
Query: 483 IEHQVALATGETPIAVIG 500
+EH+VA ATGETPIAV+G
Sbjct: 858 VEHRVAEATGETPIAVMG 875
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 111/213 (52%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLV-KTDSNSNQYGSEG-H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ KTDS + G H
Sbjct: 441 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSGLH 500
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T QT + QS +H D S+ P+FP DL L + T+ DV + +YR HC
Sbjct: 501 STPEQTMAV---QSQHHQQYIDVSHVFPEFPAPDLGSVLLQDGVTLHDVKALQLVYRRHC 557
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 558 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 617
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
+ ++R D + YQ LVE+LIPD TL
Sbjct: 618 RILRWMRSCDHILYQALVEILIPDVLRPVPSTL 650
>gi|351711533|gb|EHB14452.1| MHC class II regulatory factor RFX1, partial [Heterocephalus
glaber]
Length = 871
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 185/306 (60%), Positives = 221/306 (72%), Gaps = 13/306 (4%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR------SQDNNNGDECEEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR S+ E EK L K+ L LSK PV
Sbjct: 562 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKASLVLLSKFEPV 621
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP S R +G + Q C + +
Sbjct: 622 LQWTKHCDNVLYQGLVEILIPDVLRPIP----SLGRLQWRGGAGRVVPPPQPCALCGL-V 676
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
+V A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 677 QVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 736
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 737 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSSGFPKAAKLFLLKWSFY 796
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 797 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLAT 854
Query: 510 SQNPMD 515
S NP+D
Sbjct: 855 SLNPLD 860
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 112/224 (50%), Gaps = 24/224 (10%)
Query: 29 GNSKYHYYGIRVKPDSPL-------NNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHT 81
GNSKYHYYG+R+K SPL ++ + + SP+ + + K + +N
Sbjct: 445 GNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSPKQRLKPIQKMEGMTNGVAVGQQQ 504
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
AG S+ S Q + D S ++PDF E+DL LPE D+ F+ +YREHCE
Sbjct: 505 PAGL--SDISAQVQQYQQFLDASRSLPDFTELDLQGKVLPEGVGPGDIKAFQVLYREHCE 562
Query: 142 AFLDAIVTLDFSTIESLWREFWR------SQDNNNGDECEEEKYLSKSKLFCLSKCVPVQ 195
A +D +V L F+ +E+LW+ FWR S+ E EK L K+ L LSK PV
Sbjct: 563 AIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKASLVLLSKFEPVL 622
Query: 196 AFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWR 239
+ + D + YQ LVE+LIPD I SL R WR
Sbjct: 623 QWTKHCDNVLYQGLVEILIPDV---------LRPIPSLGRLQWR 657
>gi|297278206|ref|XP_001116573.2| PREDICTED: MHC class II regulatory factor RFX1-like, partial
[Macaca mulatta]
Length = 275
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 169/227 (74%), Positives = 194/227 (85%), Gaps = 2/227 (0%)
Query: 288 LIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSL 347
LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +KV A GAFAQ LRRYTSL
Sbjct: 1 LIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRVKVAAAGAFAQTLRRYTSL 60
Query: 348 NHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQ 407
NHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C+ +VQ+LE DFK+TLQQ
Sbjct: 61 NHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRCEDRVVQRLEQDFKVTLQQ 120
Query: 408 QNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGS 467
QNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFYSSMVIRDLTLRSAASFGS
Sbjct: 121 QNSLEQWAAWLDGVVSQVLKPYQGSAGFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGS 180
Query: 468 FHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVESSQNPM 514
FHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +S NP+
Sbjct: 181 FHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLATSLNPL 225
>gi|444526381|gb|ELV14332.1| MHC class II regulatory factor RFX1 [Tupaia chinensis]
Length = 784
Score = 350 bits (899), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 179/306 (58%), Positives = 213/306 (69%), Gaps = 36/306 (11%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR------SQDNNNGDECEEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR S+ E EK L K+ L LSK PV
Sbjct: 504 EAIVDVMVNLQFTLVETLWKTFWRYNLGQPSEAPPLAVHDEAEKRLPKASLVLLSKFEPV 563
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +E WLT+AM P+EM+ +
Sbjct: 564 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLEGWLTHAMVNIPEEMLRV 623
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 624 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 683
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL V
Sbjct: 684 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGV---------------------------- 715
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 716 GSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLAT 773
Query: 510 SQNPMD 515
S NP+D
Sbjct: 774 SLNPLD 779
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 100/196 (51%), Gaps = 23/196 (11%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
GNSKYHYYG+R+K SPL + ++ + RG+ + +Q + +
Sbjct: 409 GNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPF---------SQKQRQVDNVVPHSIP 459
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIV 148
P P D S ++PDF E+DL LP+ D+ F+ +YREHCEA +D +V
Sbjct: 460 CPGP--------PDASRSLPDFTELDLQGKLLPDGVGPGDIKAFQVLYREHCEAIVDVMV 511
Query: 149 TLDFSTIESLWREFWR------SQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 202
L F+ +E+LW+ FWR S+ E EK L K+ L LSK PV + + D
Sbjct: 512 NLQFTLVETLWKTFWRYNLGQPSEAPPLAVHDEAEKRLPKASLVLLSKFEPVLQWTKHCD 571
Query: 203 FLFYQNLVEVLIPDAF 218
+ YQ LVE+LIPD
Sbjct: 572 NVLYQGLVEILIPDVL 587
>gi|432869936|ref|XP_004071756.1| PREDICTED: MHC class II regulatory factor RFX1-like [Oryzias
latipes]
Length = 818
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 162/222 (72%), Positives = 186/222 (83%), Gaps = 6/222 (2%)
Query: 279 LFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFA 338
L Y+ EV+ P+ +LT +IRNFAK +ESWLTNAM P+EM+ IKVT+ AFA
Sbjct: 534 LLYREHCEVISPE------SALTQAIRNFAKSLESWLTNAMMNIPEEMVRIKVTSANAFA 587
Query: 339 QMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLE 398
Q LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C+ +VQ+LE
Sbjct: 588 QTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRCEDRVVQRLE 647
Query: 399 SDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLT 458
DFKLTLQQQNSLE+WA WL +VV+ VLKP++ P F KAA+ FLLKWSFYSSMVIRDLT
Sbjct: 648 QDFKLTLQQQNSLEQWAVWLDSVVSQVLKPYQHSPAFPKAAKLFLLKWSFYSSMVIRDLT 707
Query: 459 LRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
LRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G
Sbjct: 708 LRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG 749
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 25/131 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
GNSKYHYYG+R+K S L + ++ + R + + + Q H G TN
Sbjct: 418 GNSKYHYYGLRIKAGSSLLRLMEDQQHLAMRQQPF-------SQKQRLKPVHKVEGMTNG 470
Query: 89 NP------------------SPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVD 130
S Q + D S A+P+FP+IDL LPE +E +
Sbjct: 471 TAAGAGQQQQQQQGSGHVDISTQVQQYQQFLDASRALPEFPDIDLQGKSLPEGIELEHIK 530
Query: 131 TFRSIYREHCE 141
+F+ +YREHCE
Sbjct: 531 SFQLLYREHCE 541
>gi|291415560|ref|XP_002724020.1| PREDICTED: regulatory factor X2-like [Oryctolagus cuniculus]
Length = 647
Score = 337 bits (864), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 159/205 (77%), Positives = 178/205 (86%)
Query: 296 IPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAAR 355
+PG+LT +IRNFAK +E WLTNAM PQ +I KV V AFAQ LRRYTSLNHLAQAAR
Sbjct: 392 LPGTLTQAIRNFAKSLEGWLTNAMSDFPQRVIQTKVGVVSAFAQTLRRYTSLNHLAQAAR 451
Query: 356 AVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWA 415
AVLQN++QINQML+DLNRVDF NVQEQASWVCQC+ S+VQ+LE DFKLTLQ+Q+SL++WA
Sbjct: 452 AVLQNTSQINQMLSDLNRVDFANVQEQASWVCQCEESVVQRLEQDFKLTLQRQSSLDQWA 511
Query: 416 NWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLY 475
WL VV VLK G P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLY
Sbjct: 512 RWLDGVVTQVLKQHAGSPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLY 571
Query: 476 DEYMFYLIEHQVALATGETPIAVIG 500
DEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 572 DEYMFYLVEHRVAQATGETPIAVMG 596
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 67/142 (47%), Gaps = 25/142 (17%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRG 60
GNSKYHYYGIR+KPDSPLN + Y +R +P + PR
Sbjct: 231 GNSKYHYYGIRLKPDSPLNRL--------QEDTQYMAMRQQPT-----------HQKPRY 271
Query: 61 KKYKLVKTDS-NSNQYGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDC 119
+ + KTDS + S H+T Q + QS +H D S+ P+FP DL
Sbjct: 272 RPAQ--KTDSLGDSSAHSSLHSTPEQATAA---QSQHHQQYIDVSHVFPEFPAPDLGSVL 326
Query: 120 LPEDCTIEDVDTFRSIYREHCE 141
L T++DV T + YR HCE
Sbjct: 327 LQGSVTLQDVKTLQLAYRRHCE 348
>gi|391332605|ref|XP_003740723.1| PREDICTED: transcription factor RFX3-like [Metaseiulus
occidentalis]
Length = 670
Score = 327 bits (839), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 162/283 (57%), Positives = 204/283 (72%), Gaps = 9/283 (3%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
++ LD IV L F + LW++F+ + + EEEK + L + V F+R
Sbjct: 366 ESLLDVIVNLQFQKVSPLWQQFFITSPSTP----EEEK--KRDHLHRVLTSPSVVTFIRT 419
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
D FY NLV VLIPDVLRP+P +LT +IRNFAK VE W+++AMQ CP+E +K++ +
Sbjct: 420 TDTQFYHNLVHVLIPDVLRPVPAALTQAIRNFAKNVEQWMSSAMQKCPEEAKKLKLSLIN 479
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQ 395
+FAQ LRRYTSLNHLAQAARAVLQNS QI QML DLN+VDF NVQ+QASWVC+CD LV+
Sbjct: 480 SFAQTLRRYTSLNHLAQAARAVLQNSAQIQQMLLDLNKVDFRNVQDQASWVCECDPGLVR 539
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIR 455
LE DFK L+ Q SL +WA WL+ VV+ VL E + K++R+FLL WSFYSSM+IR
Sbjct: 540 VLEQDFKRQLESQASLSDWARWLEQVVDKVL---ENTLDIVKSSRRFLLTWSFYSSMIIR 596
Query: 456 DLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAV 498
DLTLRSA+SFGSFHLIRLL DEYMFYL+E +VA A + PI++
Sbjct: 597 DLTLRSASSFGSFHLIRLLSDEYMFYLVEQKVAQALEKVPISL 639
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 96/200 (48%), Gaps = 19/200 (9%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSP-----RGKKYKLVKTDSNSNQYGSEGHTTA 83
GNSKYHYYGIRVKP SPL +P+ D + +P R K + + S+ +
Sbjct: 247 GNSKYHYYGIRVKPSSPLAGLPVEDSDSNPPPVIVRPKPVTVKRCLGISSDVSPDVKPKV 306
Query: 84 GQTNSNPSPQ---SGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDT--FRSIYRE 138
N + +G+ FLGD S A+P + L E I++ + F YRE
Sbjct: 307 DDMNEANLAEVSLAGSKGFLGDPSQALPSQLMMVLMSG---EGEFIDEKEAYNFTLNYRE 363
Query: 139 HCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFV 198
+CE+ LD IV L F + LW++F+ + + EEEK + L + V F+
Sbjct: 364 YCESLLDVIVNLQFQKVSPLWQQFFITSPSTP----EEEK--KRDHLHRVLTSPSVVTFI 417
Query: 199 RRVDFLFYQNLVEVLIPDAF 218
R D FY NLV VLIPD
Sbjct: 418 RTTDTQFYHNLVHVLIPDVL 437
>gi|260832349|ref|XP_002611120.1| hypothetical protein BRAFLDRAFT_205992 [Branchiostoma floridae]
gi|229296490|gb|EEN67130.1| hypothetical protein BRAFLDRAFT_205992 [Branchiostoma floridae]
Length = 434
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 157/259 (60%), Positives = 194/259 (74%), Gaps = 3/259 (1%)
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWR--SQDNNNGDECE 250
PV + V D +Q L + +A LD +V L F+ IE +WR FWR ++ ++ +
Sbjct: 176 PVPSGVTADDVKTFQTLYKEHC-EAILDVVVNLQFALIEQVWRTFWRNPAEGGEGQNDAD 234
Query: 251 EEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKG 310
EK L+K KL+ L PV AF+R D +FYQ+LVEVLIPDVLRPIP +LT +IRNFAK
Sbjct: 235 MEKRLTKDKLYILCDYEPVCAFMRSCDHVFYQSLVEVLIPDVLRPIPSALTQAIRNFAKS 294
Query: 311 VESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTD 370
+E WL+ AM P++M+ K++AV AF+Q LRRYTSLNHLAQAARAVLQN++QINQML+D
Sbjct: 295 LEGWLSAAMTNIPKKMVKTKLSAVNAFSQTLRRYTSLNHLAQAARAVLQNTSQINQMLSD 354
Query: 371 LNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFE 430
LNRVDF +VQEQASWVCQCD ++V +LE DFK+TLQQQNSLE WA WL +VVN VLKP+E
Sbjct: 355 LNRVDFAHVQEQASWVCQCDDAVVHRLEQDFKMTLQQQNSLEAWAVWLDSVVNQVLKPYE 414
Query: 431 GKPNFTKAARQFLLKWSFY 449
G F KAARQFLLKWSFY
Sbjct: 415 GSETFPKAARQFLLKWSFY 433
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 118/200 (59%), Gaps = 10/200 (5%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYKLVKTDSNSNQYGSEG--H 80
GNSKYHYYGIR+K SPLN + + + R GK+Y T G G
Sbjct: 78 GNSKYHYYGIRIKATSPLNRLQEDQGHMAMRQQPINQGKRYMFKPTVPRPEGLGDAGADQ 137
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+G +S+ S Q + FLGD S+A+P FPEI + D +P T +DV TF+++Y+EHC
Sbjct: 138 AASGAGDSSQSQQQQHQQFLGDASSALPTFPEISTTSDPVPSGVTADDVKTFQTLYKEHC 197
Query: 141 EAFLDAIVTLDFSTIESLWREFWR--SQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFV 198
EA LD +V L F+ IE +WR FWR ++ ++ + EK L+K KL+ L PV AF+
Sbjct: 198 EAILDVVVNLQFALIEQVWRTFWRNPAEGGEGQNDADMEKRLTKDKLYILCDYEPVCAFM 257
Query: 199 RRVDFLFYQNLVEVLIPDAF 218
R D +FYQ+LVEVLIPD
Sbjct: 258 RSCDHVFYQSLVEVLIPDVL 277
>gi|402587873|gb|EJW81807.1| hypothetical protein WUBG_07284, partial [Wuchereria bancrofti]
Length = 581
Score = 307 bits (787), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 205/508 (40%), Positives = 267/508 (52%), Gaps = 82/508 (16%)
Query: 29 GNSKYHYYGIRVKPDSPLNN-----IPLSDENGSPRGKKYKLVK---------------- 67
GNSKYHYYGIR+KPDSPLN + L ++N +P + V
Sbjct: 103 GNSKYHYYGIRIKPDSPLNRGANGAMALGEDNRAPLISSVQSVNHIPPRSSSRRSTLGSN 162
Query: 68 --TDSNSNQYGSEGHTTAGQ-TNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDC 124
T+ +N E T Q TNS SP S + + + + ++C
Sbjct: 163 SVTNRRTNSTAMETDTMLSQATNSRSSPPSTYERSISSDHGTFSSYRNQNANSSMGGDNC 222
Query: 125 TIEDVDTFRSIYREHCEAFLDAIVT-LDFSTIESLWREFWRSQDNNNGDECEEEKYLSKS 183
T D+D E D V + ++ L E YL
Sbjct: 223 T--DMDR---------EVLGDGEVPHIGIPDMQGL------------------ETYLQPL 253
Query: 184 KLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDN 243
L +Q VR ++ + N E+L + + L F +E W FW Q
Sbjct: 254 GL-------TLQHAVRFIES-YTTNCAEIL------ECVKQLHFDMVEECWITFW--QPE 297
Query: 244 NNGDECEEE---------KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLR 294
N+ ++ E+E K LS+ +LF L +QAFV+ +DF FYQ +VEVLIPDVL
Sbjct: 298 NDQEDVEDEDCSSNDKTSKGLSQIQLFRLCTVPQMQAFVQNMDFSFYQVVVEVLIPDVLS 357
Query: 295 P-IPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQA 353
+ GSLT IRNFAK +E L AMQG P + K+ AV AQ LRRYTSLNHLA A
Sbjct: 358 SNVSGSLTLQIRNFAKSLEMQLKKAMQGAPDVIQRKKLIAVRTLAQTLRRYTSLNHLASA 417
Query: 354 ARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEE 413
AR VLQ QI+QML D NRVD +VQ+QA WVC CD LV L+SDF+ LQ+Q SLE+
Sbjct: 418 ARGVLQKPDQIHQMLQDFNRVDMASVQDQAGWVCDCDPILVSNLQSDFRENLQKQKSLEQ 477
Query: 414 WANWLKNVVNAVLKPFEGKPNFTKA--ARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLI 471
WA W++ VV+ VL + KP A ++QFL WSFYSSM+IRDLTLRSA SFGSFHLI
Sbjct: 478 WAEWMEAVVDQVLAKYHDKPYAVLADVSKQFLKNWSFYSSMIIRDLTLRSAQSFGSFHLI 537
Query: 472 RLLYDEYMFYLIEHQVALATGETPIAVI 499
RLL+DEY+ YL+E ++A A+ + I V+
Sbjct: 538 RLLFDEYLLYLVELRLAKASNKPVIYVM 565
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 111/256 (43%), Gaps = 40/256 (15%)
Query: 1 GNSKYHYYGIRVKPDSPLNN-----IPLSDENGGNSKYHYYGI-RVKPDSPLNNIPLSDE 54
GNSKYHYYGIR+KPDSPLN + L ++N + + P S L
Sbjct: 103 GNSKYHYYGIRIKPDSPLNRGANGAMALGEDNRAPLISSVQSVNHIPPRSSSRRSTLGSN 162
Query: 55 NGSPRGKKYKLVKTDSNSNQ---------------YGSEGHTTAGQTNSNPSPQSGNHN- 98
+ + R ++TD+ +Q S+ T + N N + G N
Sbjct: 163 SVTNRRTNSTAMETDTMLSQATNSRSSPPSTYERSISSDHGTFSSYRNQNANSSMGGDNC 222
Query: 99 ------FLGDGSNAIPDFPEIDLSEDCL-PEDCTIEDVDTFRSIYREHCEAFLDAIVTLD 151
LGDG P++ E L P T++ F Y +C L+ + L
Sbjct: 223 TDMDREVLGDGEVPHIGIPDMQGLETYLQPLGLTLQHAVRFIESYTTNCAEILECVKQLH 282
Query: 152 FSTIESLWREFWRSQDNNNGDECEEE---------KYLSKSKLFCLSKCVPVQAFVRRVD 202
F +E W FW Q N+ ++ E+E K LS+ +LF L +QAFV+ +D
Sbjct: 283 FDMVEECWITFW--QPENDQEDVEDEDCSSNDKTSKGLSQIQLFRLCTVPQMQAFVQNMD 340
Query: 203 FLFYQNLVEVLIPDAF 218
F FYQ +VEVLIPD
Sbjct: 341 FSFYQVVVEVLIPDVL 356
>gi|170582623|ref|XP_001896213.1| RFX DNA-binding domain containing protein [Brugia malayi]
gi|158596633|gb|EDP34946.1| RFX DNA-binding domain containing protein [Brugia malayi]
Length = 701
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 201/510 (39%), Positives = 275/510 (53%), Gaps = 50/510 (9%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
GNSKYHYYGIR+KPDSPLN RG + + N S + N
Sbjct: 123 GNSKYHYYGIRIKPDSPLN-----------RGANGAMALGEDNRTSLIS----SVQSVNQ 167
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIV 148
P S + LG SN++ + S + D + RS + + +
Sbjct: 168 IPPRSSSRRSALG--SNSVTNR---RXSSXAMETDTMLSQATNSRS----SPPSTYEHSI 218
Query: 149 TLDFSTIESLWREFWRSQDNNN---GDECEE--EKYLSKSKL--FCLSKCVPVQAFVRRV 201
+ D T S +R+Q+ N+ GD C + + L ++ + ++ +++ +
Sbjct: 219 SSDHGTFSS-----YRNQNTNSSMGGDNCTDMDREVLGDGEVPHIGIPDMQGLETYLQPL 273
Query: 202 DFLFYQ--NLVEVLIPDA--FLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC----E 250
+E + L+ + L F +E W FW+ Q++ + +EC +
Sbjct: 274 GLTLQHAVRFIESYTTNCAXILECVKQLHFDMVEECWITFWQPENDQEDVDDEECSSNDK 333
Query: 251 EEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRP-IPGSLTSSIRNFAK 309
K LS+ +LF L +QAFV+ +DF FYQ +VEVLIPDVL + GSLT IRNFAK
Sbjct: 334 TPKGLSQIQLFRLCTVPQMQAFVQNMDFSFYQVVVEVLIPDVLSSNVSGSLTLQIRNFAK 393
Query: 310 GVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLT 369
+E L AMQG P + K+ AV AQ LRRYTSLNHLA AAR VLQ QI+QML
Sbjct: 394 SLEMQLKKAMQGAPDVIQRKKLIAVRTLAQTLRRYTSLNHLASAARGVLQKPDQIHQMLH 453
Query: 370 DLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPF 429
D NRVD +VQ+QA WVC CD LV L+SDF+ LQ+Q SLE+WA W++ VV+ VL +
Sbjct: 454 DFNRVDIASVQDQAGWVCDCDPVLVSNLQSDFRENLQKQKSLEQWAEWMEAVVDQVLAKY 513
Query: 430 EGKPNFTKA--ARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQV 487
K A ++QFL WSFYSSM+IRDLTLRSA SFGSFHLIRLL+DEY+ YL+E ++
Sbjct: 514 HDKAYAVLADVSKQFLKNWSFYSSMIIRDLTLRSAQSFGSFHLIRLLFDEYLLYLVELRL 573
Query: 488 ALATGETPIAVIGSKESNPVESSQNPMDNG 517
A A+ + I V+ N V + N + G
Sbjct: 574 AKASNKPVIYVMTQVMENIVFNETNAIGAG 603
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 114/254 (44%), Gaps = 36/254 (14%)
Query: 1 GNSKYHYYGIRVKPDSPLNN-----IPLSDENGGNSKYHYYGI-RVKPDSPLNNIPLSDE 54
GNSKYHYYGIR+KPDSPLN + L ++N + + ++ P S L
Sbjct: 123 GNSKYHYYGIRIKPDSPLNRGANGAMALGEDNRTSLISSVQSVNQIPPRSSSRRSALGSN 182
Query: 55 NGSPRGKKYKLVKTDSNSNQ---------------YGSEGHTTAGQTNSNPSPQSGNHN- 98
+ + R ++TD+ +Q S+ T + N N + G N
Sbjct: 183 SVTNRRXSSXAMETDTMLSQATNSRSSPPSTYEHSISSDHGTFSSYRNQNTNSSMGGDNC 242
Query: 99 ------FLGDGSNAIPDFPEIDLSEDCL-PEDCTIEDVDTFRSIYREHCEAFLDAIVTLD 151
LGDG P++ E L P T++ F Y +C L+ + L
Sbjct: 243 TDMDREVLGDGEVPHIGIPDMQGLETYLQPLGLTLQHAVRFIESYTTNCAXILECVKQLH 302
Query: 152 FSTIESLWREFWR---SQDNNNGDEC----EEEKYLSKSKLFCLSKCVPVQAFVRRVDFL 204
F +E W FW+ Q++ + +EC + K LS+ +LF L +QAFV+ +DF
Sbjct: 303 FDMVEECWITFWQPENDQEDVDDEECSSNDKTPKGLSQIQLFRLCTVPQMQAFVQNMDFS 362
Query: 205 FYQNLVEVLIPDAF 218
FYQ +VEVLIPD
Sbjct: 363 FYQVVVEVLIPDVL 376
>gi|432095901|gb|ELK26821.1| Transcription factor RFX3 [Myotis davidii]
Length = 543
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 140/171 (81%), Positives = 158/171 (92%)
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
+V AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLNRVDF NVQEQASWVCQC
Sbjct: 279 EVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLNRVDFANVQEQASWVCQC 338
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
D ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+P+F KAARQFLLKWSFY
Sbjct: 339 DDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGRPSFPKAARQFLLKWSFY 398
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 399 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMG 449
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 71/142 (50%), Gaps = 25/142 (17%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRG 60
GNSKYHYYGIRVKPDSPLN + Y +R +P +
Sbjct: 162 GNSKYHYYGIRVKPDSPLNRL--------QEDMQYMAMRQQP--------------MQQK 199
Query: 61 KKYK-LVKTDSNSNQYGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDC 119
++YK + K D ++ + G T QS +H D S A+P+F E+++S
Sbjct: 200 QRYKPMQKVDGVADGFTGSGQQTGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--S 257
Query: 120 LPEDCTIEDVDTFRSIYREHCE 141
LP+ T ED+ + +S+YREHCE
Sbjct: 258 LPDGTTFEDIKSLQSLYREHCE 279
>gi|432102005|gb|ELK29825.1| DNA-binding protein RFX2 [Myotis davidii]
Length = 817
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 143/234 (61%), Positives = 171/234 (73%), Gaps = 8/234 (3%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A LD ++ L F IE LW FW ++ + + DE E L K KL L KC
Sbjct: 572 EATLDVVMNLQFHYIEKLWLSFWNAKASPSDGPASLPASDEIPEATVLPKDKLVSLCKCD 631
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVEVLIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 632 PILKWMRNCDHILYQALVEVLIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 691
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV+ V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 692 QTKVSVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 751
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQ 441
QC S+VQ+LE DFKLTLQQQ+SL++WA+WL NVV VLK G P+F KAARQ
Sbjct: 752 QCKESVVQRLEQDFKLTLQQQSSLDQWASWLDNVVTQVLKQHAGSPSFPKAARQ 805
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 109/213 (51%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLVKTDSNSNQYGSEG--H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ V+ + GS H
Sbjct: 455 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPVHQKPRYRPVQKSDSPGDNGSHSSLH 514
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T Q + QS +H D S+ P+FP DL L E T++DV + YR HC
Sbjct: 515 STPEQAMAA---QSQHHQQYIDVSHVFPEFPAPDLGSVLLQESITLQDVKALQLAYRRHC 571
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA LD ++ L F IE LW FW ++ + + DE E L K KL L KC
Sbjct: 572 EATLDVVMNLQFHYIEKLWLSFWNAKASPSDGPASLPASDEIPEATVLPKDKLVSLCKCD 631
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVEVLIPD TL
Sbjct: 632 PILKWMRNCDHILYQALVEVLIPDVLRPVPSTL 664
>gi|119589523|gb|EAW69117.1| regulatory factor X, 2 (influences HLA class II expression),
isoform CRA_f [Homo sapiens]
Length = 318
Score = 291 bits (744), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 139/173 (80%), Positives = 156/173 (90%)
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
++V V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 93 GLQVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 152
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL +VV VLK G P+F KAARQFLLKWS
Sbjct: 153 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWS 212
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 213 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 265
>gi|393909984|gb|EJD75673.1| transcription factor RFX3 [Loa loa]
Length = 817
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 154/293 (52%), Positives = 192/293 (65%), Gaps = 14/293 (4%)
Query: 219 LDAIVTLDFSTIESLWREFWRSQDNNNGDECEEE---------KYLSKSKLFCLSKCVPV 269
L+ + L F +E W FW Q N+ D+ E+E K LS+ +LF L +
Sbjct: 412 LECVKQLHFDVVEECWITFW--QPENDQDDVEDEDCASNDKTLKGLSQIQLFRLCTVPQM 469
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRP-IPGSLTSSIRNFAKGVESWLTNAMQGCPQEMIN 328
QAFV+ +DF FYQ +VEVLIPDVL I G+LT IRNFAK +E L AMQG P +
Sbjct: 470 QAFVQNMDFSFYQVIVEVLIPDVLSSNISGALTLQIRNFAKSLEIQLKKAMQGAPDVIQK 529
Query: 329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQ 388
K+ AV AQ LRRYTSLNHLA AAR VLQ QI+QML D NRVD +VQ+QA WVC
Sbjct: 530 KKLVAVRTLAQTLRRYTSLNHLASAARGVLQKPDQIHQMLQDFNRVDIASVQDQAGWVCD 589
Query: 389 CDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPN--FTKAARQFLLKW 446
CD LV L+SDF+ LQ+Q SLE+WA W++ VV+ VL + KP ++ FL W
Sbjct: 590 CDPVLVSNLQSDFRENLQKQKSLEQWAEWMEAVVDQVLAKYHDKPYGVLADVSKHFLKNW 649
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVI 499
SFYSSM+IRDLTLRSA SFGSFHLIRLL+DEY+ YL+E ++A A+ + I V+
Sbjct: 650 SFYSSMIIRDLTLRSAQSFGSFHLIRLLFDEYLLYLVELRLAKASNKPVIYVM 702
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 108/257 (42%), Gaps = 41/257 (15%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGI-------RVKPDSPLNNIPLSD 53
GNSKYHYYGIR+KPDSPLN G I ++ P S L
Sbjct: 239 GNSKYHYYGIRIKPDSPLNRGSSVAMTLGEDYNRTPLISSAQSVNQLPPRSSSRRSTLGS 298
Query: 54 ENGSPRGKKYKLVKTDSNSNQ---------------YGSEGHTTAGQTNSNPSPQSGNHN 98
+ R +++TD+ +Q S T + N N +P G N
Sbjct: 299 NSVITRRTSSTVMETDTALSQSINSRSSPPSTYEHSISSNHGTFSTYRNQNANPLIGGDN 358
Query: 99 -------FLGDGSNAIPDFPEIDLSEDCL-PEDCTIEDVDTFRSIYREHCEAFLDAIVTL 150
LGDG P++ E L P T++ F Y +C L+ + L
Sbjct: 359 CTDMDREILGDGEVPHVGIPDMQGLESYLQPLGLTLQHAVRFIESYTTNCAEVLECVKQL 418
Query: 151 DFSTIESLWREFWRSQDNNNGDECEEE---------KYLSKSKLFCLSKCVPVQAFVRRV 201
F +E W FW Q N+ D+ E+E K LS+ +LF L +QAFV+ +
Sbjct: 419 HFDVVEECWITFW--QPENDQDDVEDEDCASNDKTLKGLSQIQLFRLCTVPQMQAFVQNM 476
Query: 202 DFLFYQNLVEVLIPDAF 218
DF FYQ +VEVLIPD
Sbjct: 477 DFSFYQVIVEVLIPDVL 493
>gi|312084989|ref|XP_003144499.1| regulatory factor X [Loa loa]
Length = 640
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 156/311 (50%), Positives = 197/311 (63%), Gaps = 14/311 (4%)
Query: 219 LDAIVTLDFSTIESLWREFWRSQDNNNGDECEEE---------KYLSKSKLFCLSKCVPV 269
L+ + L F +E W FW Q N+ D+ E+E K LS+ +LF L +
Sbjct: 235 LECVKQLHFDVVEECWITFW--QPENDQDDVEDEDCASNDKTLKGLSQIQLFRLCTVPQM 292
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRP-IPGSLTSSIRNFAKGVESWLTNAMQGCPQEMIN 328
QAFV+ +DF FYQ +VEVLIPDVL I G+LT IRNFAK +E L AMQG P +
Sbjct: 293 QAFVQNMDFSFYQVIVEVLIPDVLSSNISGALTLQIRNFAKSLEIQLKKAMQGAPDVIQK 352
Query: 329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQ 388
K+ AV AQ LRRYTSLNHLA AAR VLQ QI+QML D NRVD +VQ+QA WVC
Sbjct: 353 KKLVAVRTLAQTLRRYTSLNHLASAARGVLQKPDQIHQMLQDFNRVDIASVQDQAGWVCD 412
Query: 389 CDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPN--FTKAARQFLLKW 446
CD LV L+SDF+ LQ+Q SLE+WA W++ VV+ VL + KP ++ FL W
Sbjct: 413 CDPVLVSNLQSDFRENLQKQKSLEQWAEWMEAVVDQVLAKYHDKPYGVLADVSKHFLKNW 472
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNP 506
SFYSSM+IRDLTLRSA SFGSFHLIRLL+DEY+ YL+E ++A A+ + I V+ N
Sbjct: 473 SFYSSMIIRDLTLRSAQSFGSFHLIRLLFDEYLLYLVELRLAKASNKPVIYVMTQVMQNI 532
Query: 507 VESSQNPMDNG 517
+ + + G
Sbjct: 533 ILNETTAVGTG 543
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 108/257 (42%), Gaps = 41/257 (15%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGI-------RVKPDSPLNNIPLSD 53
GNSKYHYYGIR+KPDSPLN G I ++ P S L
Sbjct: 62 GNSKYHYYGIRIKPDSPLNRGSSVAMTLGEDYNRTPLISSAQSVNQLPPRSSSRRSTLGS 121
Query: 54 ENGSPRGKKYKLVKTDSNSNQ---------------YGSEGHTTAGQTNSNPSPQSGNHN 98
+ R +++TD+ +Q S T + N N +P G N
Sbjct: 122 NSVITRRTSSTVMETDTALSQSINSRSSPPSTYEHSISSNHGTFSTYRNQNANPLIGGDN 181
Query: 99 -------FLGDGSNAIPDFPEIDLSEDCL-PEDCTIEDVDTFRSIYREHCEAFLDAIVTL 150
LGDG P++ E L P T++ F Y +C L+ + L
Sbjct: 182 CTDMDREILGDGEVPHVGIPDMQGLESYLQPLGLTLQHAVRFIESYTTNCAEVLECVKQL 241
Query: 151 DFSTIESLWREFWRSQDNNNGDECEEE---------KYLSKSKLFCLSKCVPVQAFVRRV 201
F +E W FW Q N+ D+ E+E K LS+ +LF L +QAFV+ +
Sbjct: 242 HFDVVEECWITFW--QPENDQDDVEDEDCASNDKTLKGLSQIQLFRLCTVPQMQAFVQNM 299
Query: 202 DFLFYQNLVEVLIPDAF 218
DF FYQ +VEVLIPD
Sbjct: 300 DFSFYQVIVEVLIPDVL 316
>gi|431922355|gb|ELK19446.1| DNA-binding protein RFX2 [Pteropus alecto]
Length = 741
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 141/233 (60%), Positives = 169/233 (72%), Gaps = 8/233 (3%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A LD ++ L F IE LW FW S+ +++ DE E L K KL L KC
Sbjct: 333 EATLDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEAAVLPKDKLVSLCKCD 392
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
PV ++R D + YQ LVE+LIPDVLRP+P SLT +IRNFAK +E WLTNAM PQ+++
Sbjct: 393 PVLKWMRSCDHILYQALVEILIPDVLRPVPSSLTQAIRNFAKSLEGWLTNAMSDFPQQVV 452
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 453 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 512
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAAR 440
QC+ S+VQ+LE DFKLTLQQQ+SL++WA WL +VV LK G P+F KAAR
Sbjct: 513 QCEESVVQRLEQDFKLTLQQQSSLDQWARWLDDVVTQALKQHAGSPSFPKAAR 565
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 105/206 (50%), Gaps = 19/206 (9%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLVKTDSNSNQYGSEG--H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ + + GS H
Sbjct: 216 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPVHQKPRYRPAQKTDSLGDSGSHSSLH 275
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T Q + QS +H D S+ P+FP DL L E +DV + YR HC
Sbjct: 276 STPEQAMAA---QSQHHQQYIDVSHVFPEFPAPDLGSTLLQESVLPQDVRALQLAYRRHC 332
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA LD ++ L F IE LW FW S+ +++ DE E L K KL L KC
Sbjct: 333 EATLDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEAAVLPKDKLVSLCKCD 392
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAF 218
PV ++R D + YQ LVE+LIPD
Sbjct: 393 PVLKWMRSCDHILYQALVEILIPDVL 418
>gi|355716234|gb|AES05548.1| regulatory factor X, 2 [Mustela putorius furo]
Length = 233
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 138/233 (59%), Positives = 165/233 (70%), Gaps = 13/233 (5%)
Query: 220 DAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCVPVQA 271
D +V L F IE LW FW S+ ++ D E L K KL L KC P+
Sbjct: 1 DVVVNLQFHYIEKLWLSFWNSKASSGDGPASLPASDGEPEGAVLPKDKLVSLCKCEPILK 60
Query: 272 FVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKV 331
++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM+ PQ++I KV
Sbjct: 61 WMRDCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMRDFPQQVIQTKV 120
Query: 332 TAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNR-----VDFHNVQEQASWV 386
V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNR VDF NVQEQASWV
Sbjct: 121 GVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVDFANVQEQASWV 180
Query: 387 CQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAA 439
CQC+ S+VQ+LE DFKLTLQQQ+SL++WA WL +VV VLK G P+F KAA
Sbjct: 181 CQCEESVVQRLEQDFKLTLQQQSSLDQWATWLDSVVTQVLKEHAGSPSFPKAA 233
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 145 DAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCVPVQA 196
D +V L F IE LW FW S+ ++ D E L K KL L KC P+
Sbjct: 1 DVVVNLQFHYIEKLWLSFWNSKASSGDGPASLPASDGEPEGAVLPKDKLVSLCKCEPILK 60
Query: 197 FVRRVDFLFYQNLVEVLIPDAF 218
++R D + YQ LVE+LIPD
Sbjct: 61 WMRDCDHILYQALVEILIPDVL 82
>gi|324503810|gb|ADY41647.1| DNA-binding protein RFX2 [Ascaris suum]
Length = 887
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 150/293 (51%), Positives = 187/293 (63%), Gaps = 10/293 (3%)
Query: 218 FLDAIVTLDFSTIESLWREFWR---SQDNNNGDECEEE----KYLSKSKLFCLSKCVPVQ 270
L+ + L F +E W FW+ Q+ DEC K LS+ +LF L +Q
Sbjct: 492 VLECVKQLQFEAVEECWVTFWQPENDQEEMEDDECATNEKPLKGLSQIQLFRLCTVPQMQ 551
Query: 271 AFVRRVDFLFYQNLVEVLIPDVLRP-IPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
FV+ +DF FYQ + EVLIPDVL + +LT+ IRNFAK +E L AMQG P +
Sbjct: 552 TFVQNMDFAFYQVIAEVLIPDVLSSNMSSTLTTQIRNFAKSLEGQLKKAMQGAPDVIQKK 611
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
K+ AV AQ LRRYTSLNHLA AAR VLQ QI QM D NRVD NVQ+QA WVC C
Sbjct: 612 KLVAVRMLAQTLRRYTSLNHLATAARGVLQKPDQIQQMYQDFNRVDISNVQDQAGWVCDC 671
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKP--NFTKAARQFLLKWS 447
D LV L+SDF+ LQ+Q +LE+WA W++ VV+ VL + KP A+QFL WS
Sbjct: 672 DPVLVSNLQSDFRENLQKQKTLEQWAEWMEAVVDQVLAKYHDKPLNILADVAKQFLKNWS 731
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSM+IRDLTLRSA SFGSFHLIRLLYDEY+ YL+E ++A A + I+++
Sbjct: 732 FYSSMIIRDLTLRSAQSFGSFHLIRLLYDEYLLYLVELRLAKAANKPVISIMA 784
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 115/285 (40%), Gaps = 52/285 (18%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPL------NNIPL--- 51
GNSKYHYYGIR+KPDSPLN S N Y + P + NN
Sbjct: 315 GNSKYHYYGIRIKPDSPLNRGLNSSSMSINEDYTRAHMITTPSQHIAQMHNRNNTSRRPT 374
Query: 52 --SDENGSPRGKKYKLVK-------------------TDSNSNQYGSEGHTTAGQTNSNP 90
+ G+ +++ T S +GS Q+ SN
Sbjct: 375 MGAGSMGNRAAANVAIIESSAPHSHSNNSSTSPSPGYTPSTQQTHGSSFQPYQNQS-SNS 433
Query: 91 SPQSGN-----HNFLGDGSNAIPDFPEIDLS--EDCL-PEDCTIEDVDTFRSIYREHCEA 142
S N LGDG +P P D+ E+ L P +++ F Y +C
Sbjct: 434 STNGENCAEIDREILGDGE--VPQVPIPDMQGLENFLQPLGLSLQHAMRFIEGYTANCGE 491
Query: 143 FLDAIVTLDFSTIESLWREFWR---SQDNNNGDECEEE----KYLSKSKLFCLSKCVPVQ 195
L+ + L F +E W FW+ Q+ DEC K LS+ +LF L +Q
Sbjct: 492 VLECVKQLQFEAVEECWVTFWQPENDQEEMEDDECATNEKPLKGLSQIQLFRLCTVPQMQ 551
Query: 196 AFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRS 240
FV+ +DF FYQ + EVLIPD + ST+ + R F +S
Sbjct: 552 TFVQNMDFAFYQVIAEVLIPDVLSSNMS----STLTTQIRNFAKS 592
>gi|297703804|ref|XP_002828818.1| PREDICTED: LOW QUALITY PROTEIN: MHC class II regulatory factor RFX1
[Pongo abelii]
Length = 899
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 135/274 (49%), Positives = 169/274 (61%), Gaps = 56/274 (20%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC------EEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR + + E EK L K+ L LSK PV
Sbjct: 618 EAIVDVMVNLQFTLVETLWKTFWRHNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPV 677
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+
Sbjct: 678 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLR- 736
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
V+EQASWVC+C
Sbjct: 737 -------------------------------------------------VKEQASWVCRC 747
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 748 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSAGFPKAAKLFLLKWSFY 807
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLI 483
SS++IRDLTLRSAASFGSFHLIRLLYDEYM+YLI
Sbjct: 808 SSVMIRDLTLRSAASFGSFHLIRLLYDEYMYYLI 841
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 107/204 (52%), Gaps = 17/204 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDEN-----GSPRGKKYKLV---KTDSNSNQYGSEGH 80
GNSKYHYYG+R+K SPL + + D+ G P +K +L K + +N
Sbjct: 501 GNSKYHYYGLRIKASSPLLRL-MEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGQQ 559
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+ G S+ S Q + D S ++PDF E+DL LPE D+ F+ +YREHC
Sbjct: 560 PSTG--LSDISAQVQQYQQFLDASRSLPDFTELDLQGKVLPEGVGPGDIKAFQVLYREHC 617
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC------EEEKYLSKSKLFCLSKCVPV 194
EA +D +V L F+ +E+LW+ FWR + + E EK L K+ L LSK PV
Sbjct: 618 EAIVDVMVNLQFTLVETLWKTFWRHNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPV 677
Query: 195 QAFVRRVDFLFYQNLVEVLIPDAF 218
+ + D + YQ LVE+LIPD
Sbjct: 678 LQWTKHCDNVLYQGLVEILIPDVL 701
>gi|380807345|gb|AFE75548.1| MHC class II regulatory factor RFX1, partial [Macaca mulatta]
Length = 428
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 130/212 (61%), Positives = 158/212 (74%), Gaps = 6/212 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR------SQDNNNGDECEEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR S+ E EK L K+ L LSK PV
Sbjct: 217 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPV 276
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 277 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 336
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 337 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 396
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNV 421
+ +VQ+LE DFK+TLQQQNSLE+WA WL V
Sbjct: 397 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGV 428
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 106/203 (52%), Gaps = 15/203 (7%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYK-------LVKTDSNSNQYGSEGHT 81
GNSKYHYYG+R+K SPL + ++ + RG+ + + K + +N
Sbjct: 100 GNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGQQP 159
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
+ G S+ S Q + D S ++PDF E+DL LPE D+ F+ +YREHCE
Sbjct: 160 STGL--SDISAQVQQYQQFLDASRSLPDFTELDLQGKVLPEGVGPGDIKAFQVLYREHCE 217
Query: 142 AFLDAIVTLDFSTIESLWREFWR------SQDNNNGDECEEEKYLSKSKLFCLSKCVPVQ 195
A +D +V L F+ +E+LW+ FWR S+ E EK L K+ L LSK PV
Sbjct: 218 AIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPVL 277
Query: 196 AFVRRVDFLFYQNLVEVLIPDAF 218
+ + D + YQ LVE+LIPD
Sbjct: 278 QWTKHCDNVLYQGLVEILIPDVL 300
>gi|328724075|ref|XP_001947150.2| PREDICTED: hypothetical protein LOC100160856 [Acyrthosiphon pisum]
Length = 742
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 161/366 (43%), Positives = 204/366 (55%), Gaps = 99/366 (27%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSP---------RGKKYKLVKTDSNSNQYGS-- 77
GNSKYHYYGIR+KP+S LN L +E P K K+ + N NQY +
Sbjct: 220 GNSKYHYYGIRIKPNSLLNE--LKEEESLPVETTSRSSSSKKIKKIKIEEQNCNQYTTIS 277
Query: 78 --EGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSI 135
G+ + S+PS Q+ + +LGDG+NA+P FP+I L E L ++CT+E
Sbjct: 278 SDSGNYSQNSIPSSPS-QAQDQEYLGDGANAVPQFPDIILDELQLDDNCTLE-------- 328
Query: 136 YREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQ 195
D T + L+RE ++
Sbjct: 329 ---------------DVDTFKHLYREHYK------------------------------- 342
Query: 196 AFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYL 255
AFL A++ L+F TIESLWR+FW SQDN N DE E E+YL
Sbjct: 343 ---------------------AFLSAVLNLEFGTIESLWRQFWCSQDNKN-DEYEVEQYL 380
Query: 256 SKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWL 315
SK KL+ LSKC +Q FV+ VDFLFYQNLV+VLIPDVLRP+P +LT +IRNF+K +ESWL
Sbjct: 381 SKEKLYSLSKCKTLQLFVKTVDFLFYQNLVKVLIPDVLRPVPRTLTEAIRNFSKSLESWL 440
Query: 316 TNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVD 375
+AM G P+EMI+IKV AV AFAQ LRR TS ARAVLQN T+INQ+LTDLN +D
Sbjct: 441 ISAMHGFPEEMISIKVAAVRAFAQTLRRCTS-------ARAVLQNYTKINQILTDLNCMD 493
Query: 376 FHNVQE 381
F+N QE
Sbjct: 494 FYNEQE 499
>gi|357613957|gb|EHJ68806.1| hypothetical protein KGM_13721 [Danaus plexippus]
Length = 705
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 143/283 (50%), Positives = 183/283 (64%), Gaps = 16/283 (5%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
FL+A+ +LD E R FWR + L+ + C ++RR +
Sbjct: 364 FLEAVASLDTGAAERSRRWFWRRVGRSGA-------RLAGRRDVC--------TWLRRAE 408
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+Q V++L+PDVLRPIP LT +IRNFAK +E L++ G P + A GA
Sbjct: 409 LELHQRAVDLLLPDVLRPIPSQLTQAIRNFAKSLEGALSSGSSGAPAPAARAQALAAGAL 468
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC-DASLVQQ 396
+ LRRYTSLNHLAQAARAVL N QI QML+DLNRVDF V+EQA+W C C A+ +
Sbjct: 469 SAALRRYTSLNHLAQAARAVLNNHHQIQQMLSDLNRVDFRVVREQAAWACACGSAATAHR 528
Query: 397 LESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRD 456
LE+DFK L + +SLE WA+WL++ V A L P E + ++T AR+ LL WSFYSS+VIR+
Sbjct: 529 LEADFKARLGRGSSLESWASWLESCVRAALAPHERRADYTPRARRLLLDWSFYSSLVIRE 588
Query: 457 LTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVI 499
LTLRSAASFGSFHLIRLLYDEY+ +LIE +VA E PIAV+
Sbjct: 589 LTLRSAASFGSFHLIRLLYDEYVSFLIERRVAEHRQEPPIAVM 631
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 76/195 (38%), Gaps = 44/195 (22%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
GNSKYHYYGIR K +P + P + K D E H++
Sbjct: 269 GNSKYHYYGIRAKHSAPRDLPP-------------TVQKIDE-------EPHSSDESRPR 308
Query: 89 NPSPQSG-----NHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAF 143
P G + +LG ++ L D P D T E + FR +R+H F
Sbjct: 309 EPESPVGLSGIAHRQYLG----SVSAPDPPPLQLDDPPPDVTPEAMQQFRDHHRQHGVEF 364
Query: 144 LDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDF 203
L+A+ +LD E R FWR + L+ + C ++RR +
Sbjct: 365 LEAVASLDTGAAERSRRWFWRRVGRSGA-------RLAGRRDVC--------TWLRRAEL 409
Query: 204 LFYQNLVEVLIPDAF 218
+Q V++L+PD
Sbjct: 410 ELHQRAVDLLLPDVL 424
>gi|170035480|ref|XP_001845597.1| rfx transcription factor [Culex quinquefasciatus]
gi|167877509|gb|EDS40892.1| rfx transcription factor [Culex quinquefasciatus]
Length = 626
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 112/153 (73%), Positives = 132/153 (86%)
Query: 356 AVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWA 415
AVLQNSTQI QML DLNRVDF NVQEQASW+CQCD + VQ+LE+DFK LQQQNSLE+WA
Sbjct: 428 AVLQNSTQIAQMLNDLNRVDFRNVQEQASWICQCDTAKVQRLENDFKAALQQQNSLEQWA 487
Query: 416 NWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLY 475
+WL+ VV+ L+ F KP+F AARQFLLKWSFYSSMVIRDLTLRSA SFGSFHLIRLLY
Sbjct: 488 SWLRAVVDDALEEFRDKPSFVNAARQFLLKWSFYSSMVIRDLTLRSAGSFGSFHLIRLLY 547
Query: 476 DEYMFYLIEHQVALATGETPIAVIGSKESNPVE 508
DEYMF++IEH+VA AT +TPIAV+G +++ ++
Sbjct: 548 DEYMFFIIEHKVAKATHKTPIAVMGERDNGQMQ 580
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 62/142 (43%), Gaps = 30/142 (21%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTN- 87
GNSKYHYYGIR+KP S LNN P+ ++ GK+ ++N+N S H T G N
Sbjct: 235 GNSKYHYYGIRIKPGSVLNNSPIVED-----GKQLNASHVNNNNNNNNSHNHNTMGGANG 289
Query: 88 -----------------------SNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDC 124
N P+S +LGD + A+ +F L LP +
Sbjct: 290 GGGGGMGHGGMAMNHRGSRKGMVKNDIPESCGQ-YLGDPTGALSEFSVDKLEPSRLPREI 348
Query: 125 TIEDVDTFRSIYREHCEAFLDA 146
T E V T RSI E DA
Sbjct: 349 TFEAVTTLRSILPEELRGVPDA 370
>gi|301771274|ref|XP_002921039.1| PREDICTED: MHC class II regulatory factor RFX1-like [Ailuropoda
melanoleuca]
Length = 844
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 140/306 (45%), Positives = 172/306 (56%), Gaps = 78/306 (25%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR SQ N E EK L K+ L LSK PV
Sbjct: 551 EAIIDVMVNLQFTLVETLWKTFWRYNLSQPNEAPPLAVHDEAEKRLPKASLVLLSKFEPV 610
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ + P +LT +IRNFAK +ESWLT+AM +NI
Sbjct: 611 LQWTKHCDNVLYQGPLA----------PRALTQAIRNFAKSLESWLTHAM-------VNI 653
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
+ML +RV
Sbjct: 654 P----------------------------------EEMLRVKDRV--------------- 664
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 665 ----VQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSAGFPKAAKLFLLKWSFY 720
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 721 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLTT 778
Query: 510 SQNPMD 515
S NP+D
Sbjct: 779 SLNPLD 784
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 104/208 (50%), Gaps = 20/208 (9%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDEN-----GSPRGKKYKLV---KTDSNSNQYGSEGH 80
GNSKYHYYG+R+K SPL + + D+ G P +K +L K + +N
Sbjct: 434 GNSKYHYYGLRIKASSPLLRL-MEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGPQ 492
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
G S+ S Q + D S ++PDF E+DL LPE D+ F+ +YREHC
Sbjct: 493 QATGL--SDISAQVQQYQQFLDASRSLPDFSELDLQGKVLPEGVGPGDIKAFQVLYREHC 550
Query: 141 EAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 194
EA +D +V L F+ +E+LW+ FWR SQ N E EK L K+ L LSK PV
Sbjct: 551 EAIIDVMVNLQFTLVETLWKTFWRYNLSQPNEAPPLAVHDEAEKRLPKASLVLLSKFEPV 610
Query: 195 QAFVRRVDFLFYQNLVEVLIPDAFLDAI 222
+ + D + YQ L P A AI
Sbjct: 611 LQWTKHCDNVLYQG---PLAPRALTQAI 635
>gi|119579198|gb|EAW58794.1| regulatory factor X, 3 (influences HLA class II expression),
isoform CRA_a [Homo sapiens]
Length = 540
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 148/368 (40%), Positives = 183/368 (49%), Gaps = 93/368 (25%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLN 527
Query: 373 RVDFHNVQ 380
RVDF NVQ
Sbjct: 528 RVDFANVQ 535
>gi|328710478|ref|XP_003244275.1| PREDICTED: DNA-binding protein RFX2-like [Acyrthosiphon pisum]
Length = 700
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 110/166 (66%), Positives = 135/166 (81%), Gaps = 8/166 (4%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
+AFL A++ L+F TIESLWR+FW SQD+ N DE + E+YLSK KL+ LSKC +Q FV+
Sbjct: 415 EAFLSAVLNLEFGTIESLWRQFWCSQDDKN-DEYKGEQYLSKEKLYSLSKCKALQLFVKT 473
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
VDFLFYQNLV+VLIPDV RP+ +LT +IRNF+KGVESWL +AMQGCP+E+I+IKVT V
Sbjct: 474 VDFLFYQNLVKVLIPDVHRPVTRTLTDAIRNFSKGVESWLVSAMQGCPEEIISIKVTTVR 533
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQE 381
AFAQ LRRYT+ ARAVLQN TQINQMLTDL+R+DF N+Q+
Sbjct: 534 AFAQTLRRYTT-------ARAVLQNYTQINQMLTDLSRMDFRNLQQ 572
Score = 201 bits (511), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 140/209 (66%), Gaps = 15/209 (7%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSP---------RGKKYKLVKTDSNSNQYGSEG 79
GNSKYHYYGIR+KP+S LN+ L +E P K K+ + N NQY +
Sbjct: 293 GNSKYHYYGIRIKPNSLLND--LKEEESLPVETTSRSSSSKKIKKIKIEEQNCNQYTTNS 350
Query: 80 HTTAGQT-NSNPS--PQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIY 136
+ + NS PS PQ+ + +LGDG+NA+P FP+I L E L ++CT+EDVD F+ +Y
Sbjct: 351 SDSGNYSQNSIPSSPPQAQDQEYLGDGANAVPQFPDIILDELQLDDNCTLEDVDKFKHLY 410
Query: 137 REHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQA 196
REHCEAFL A++ L+F TIESLWR+FW SQD+ N DE + E+YLSK KL+ LSKC +Q
Sbjct: 411 REHCEAFLSAVLNLEFGTIESLWRQFWCSQDDKN-DEYKGEQYLSKEKLYSLSKCKALQL 469
Query: 197 FVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
FV+ VDFLFYQNLV+VLIPD TL
Sbjct: 470 FVKTVDFLFYQNLVKVLIPDVHRPVTRTL 498
>gi|71988112|ref|NP_001022140.1| Protein DAF-19, isoform b [Caenorhabditis elegans]
gi|13432161|sp|Q09555.3|DAF19_CAEEL RecName: Full=RFX-like transcription factor daf-19; AltName:
Full=Abnormal dauer formation protein 19
gi|7381608|gb|AAF61564.1|AF226156_1 RFX-like transcription factor DAF-19 [Caenorhabditis elegans]
gi|14530436|emb|CAC42295.1| Protein DAF-19, isoform b [Caenorhabditis elegans]
Length = 805
Score = 225 bits (573), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 119/303 (39%), Positives = 176/303 (58%), Gaps = 18/303 (5%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
L I +DF+++E W +FW N G + + + L VQ ++ VD
Sbjct: 496 ILALIKNIDFASVEDTWSKFW---SGNFG--------VDRDHISALCTLDQVQDYIIEVD 544
Query: 278 FLFYQNLVEVLIPDVL-RPIPGSLTSSIRNFAKGVESWLTNAMQ--GCPQEMINIKVTAV 334
YQ +V+ LIP+VL + +T + R FAK ++ +L ++ + + K+ A+
Sbjct: 545 LALYQTIVDTLIPNVLLSELSTGMTQTCRTFAKNIDVYLRKSLMLANLGEFFVKKKIQAI 604
Query: 335 GAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLV 394
Q L+RYTSLNHLA A+R VL Q+ QM D RVD + V +QA W+C CD+ +V
Sbjct: 605 KYLQQGLKRYTSLNHLAHASRGVLMKPEQVQQMYQDYIRVDINTVHQQAGWICGCDSVMV 664
Query: 395 QQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPN--FTKAARQFLLKWSFYSSM 452
+ + FK LQ+ +++E WA WL+++V+ VL + KP +QFLL WSFY+SM
Sbjct: 665 HHVNNAFKHNLQRMSAMEVWAEWLESIVDQVLAKYHDKPANVIANVGKQFLLNWSFYTSM 724
Query: 453 VIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVESSQN 512
+IRDLTLRSA SFGSF LIRLL D+YM+YLIE ++A A + I VI + + P+ + N
Sbjct: 725 IIRDLTLRSAMSFGSFTLIRLLADDYMYYLIESKIAKAGKQQLITVIRADKDWPL--TTN 782
Query: 513 PMD 515
P +
Sbjct: 783 PQE 785
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 127 EDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLF 186
E++++ IY C L I +DF+++E W +FW N G + + +
Sbjct: 480 EELNSLIDIYEILCREILALIKNIDFASVEDTWSKFW---SGNFG--------VDRDHIS 528
Query: 187 CLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVT 224
L VQ ++ VD YQ +V+ LIP+ L + T
Sbjct: 529 ALCTLDQVQDYIIEVDLALYQTIVDTLIPNVLLSELST 566
>gi|71988109|ref|NP_001022139.1| Protein DAF-19, isoform a [Caenorhabditis elegans]
gi|7542484|gb|AAF63475.1|AF233652_1 RFX-type transcription factor DAF-19 short variant [Caenorhabditis
elegans]
gi|3876596|emb|CAA88701.1| Protein DAF-19, isoform a [Caenorhabditis elegans]
Length = 780
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 119/303 (39%), Positives = 176/303 (58%), Gaps = 18/303 (5%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
L I +DF+++E W +FW N G + + + L VQ ++ VD
Sbjct: 471 ILALIKNIDFASVEDTWSKFW---SGNFG--------VDRDHISALCTLDQVQDYIIEVD 519
Query: 278 FLFYQNLVEVLIPDVL-RPIPGSLTSSIRNFAKGVESWLTNAMQ--GCPQEMINIKVTAV 334
YQ +V+ LIP+VL + +T + R FAK ++ +L ++ + + K+ A+
Sbjct: 520 LALYQTIVDTLIPNVLLSELSTGMTQTCRTFAKNIDVYLRKSLMLANLGEFFVKKKIQAI 579
Query: 335 GAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLV 394
Q L+RYTSLNHLA A+R VL Q+ QM D RVD + V +QA W+C CD+ +V
Sbjct: 580 KYLQQGLKRYTSLNHLAHASRGVLMKPEQVQQMYQDYIRVDINTVHQQAGWICGCDSVMV 639
Query: 395 QQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPN--FTKAARQFLLKWSFYSSM 452
+ + FK LQ+ +++E WA WL+++V+ VL + KP +QFLL WSFY+SM
Sbjct: 640 HHVNNAFKHNLQRMSAMEVWAEWLESIVDQVLAKYHDKPANVIANVGKQFLLNWSFYTSM 699
Query: 453 VIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVESSQN 512
+IRDLTLRSA SFGSF LIRLL D+YM+YLIE ++A A + I VI + + P+ + N
Sbjct: 700 IIRDLTLRSAMSFGSFTLIRLLADDYMYYLIESKIAKAGKQQLITVIRADKDWPL--TTN 757
Query: 513 PMD 515
P +
Sbjct: 758 PQE 760
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 127 EDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLF 186
E++++ IY C L I +DF+++E W +FW N G + + +
Sbjct: 455 EELNSLIDIYEILCREILALIKNIDFASVEDTWSKFW---SGNFG--------VDRDHIS 503
Query: 187 CLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVT 224
L VQ ++ VD YQ +V+ LIP+ L + T
Sbjct: 504 ALCTLDQVQDYIIEVDLALYQTIVDTLIPNVLLSELST 541
>gi|392891414|ref|NP_001254236.1| Protein DAF-19, isoform d [Caenorhabditis elegans]
gi|225878056|emb|CAX51691.2| Protein DAF-19, isoform d [Caenorhabditis elegans]
Length = 661
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 117/298 (39%), Positives = 174/298 (58%), Gaps = 16/298 (5%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
L I +DF+++E W +FW N G + + + L VQ ++ VD
Sbjct: 352 ILALIKNIDFASVEDTWSKFWSG---NFG--------VDRDHISALCTLDQVQDYIIEVD 400
Query: 278 FLFYQNLVEVLIPDVL-RPIPGSLTSSIRNFAKGVESWLTNAMQ--GCPQEMINIKVTAV 334
YQ +V+ LIP+VL + +T + R FAK ++ +L ++ + + K+ A+
Sbjct: 401 LALYQTIVDTLIPNVLLSELSTGMTQTCRTFAKNIDVYLRKSLMLANLGEFFVKKKIQAI 460
Query: 335 GAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLV 394
Q L+RYTSLNHLA A+R VL Q+ QM D RVD + V +QA W+C CD+ +V
Sbjct: 461 KYLQQGLKRYTSLNHLAHASRGVLMKPEQVQQMYQDYIRVDINTVHQQAGWICGCDSVMV 520
Query: 395 QQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPN--FTKAARQFLLKWSFYSSM 452
+ + FK LQ+ +++E WA WL+++V+ VL + KP +QFLL WSFY+SM
Sbjct: 521 HHVNNAFKHNLQRMSAMEVWAEWLESIVDQVLAKYHDKPANVIANVGKQFLLNWSFYTSM 580
Query: 453 VIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVESS 510
+IRDLTLRSA SFGSF LIRLL D+YM+YLIE ++A A + I VI + + P+ ++
Sbjct: 581 IIRDLTLRSAMSFGSFTLIRLLADDYMYYLIESKIAKAGKQQLITVIRADKDWPLTTN 638
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 127 EDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLF 186
E++++ IY C L I +DF+++E W +FW N G + + +
Sbjct: 336 EELNSLIDIYEILCREILALIKNIDFASVEDTWSKFWSG---NFG--------VDRDHIS 384
Query: 187 CLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVT 224
L VQ ++ VD YQ +V+ LIP+ L + T
Sbjct: 385 ALCTLDQVQDYIIEVDLALYQTIVDTLIPNVLLSELST 422
>gi|392891416|ref|NP_001254237.1| Protein DAF-19, isoform c [Caenorhabditis elegans]
gi|193299662|gb|ACF17932.1| DAF-19 isoform M [Caenorhabditis elegans]
gi|211970345|emb|CAR97827.1| Protein DAF-19, isoform c [Caenorhabditis elegans]
Length = 622
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/298 (39%), Positives = 174/298 (58%), Gaps = 16/298 (5%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
L I +DF+++E W +FW N G + + + L VQ ++ VD
Sbjct: 313 ILALIKNIDFASVEDTWSKFWSG---NFG--------VDRDHISALCTLDQVQDYIIEVD 361
Query: 278 FLFYQNLVEVLIPDVL-RPIPGSLTSSIRNFAKGVESWLTNAMQ--GCPQEMINIKVTAV 334
YQ +V+ LIP+VL + +T + R FAK ++ +L ++ + + K+ A+
Sbjct: 362 LALYQTIVDTLIPNVLLSELSTGMTQTCRTFAKNIDVYLRKSLMLANLGEFFVKKKIQAI 421
Query: 335 GAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLV 394
Q L+RYTSLNHLA A+R VL Q+ QM D RVD + V +QA W+C CD+ +V
Sbjct: 422 KYLQQGLKRYTSLNHLAHASRGVLMKPEQVQQMYQDYIRVDINTVHQQAGWICGCDSVMV 481
Query: 395 QQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPN--FTKAARQFLLKWSFYSSM 452
+ + FK LQ+ +++E WA WL+++V+ VL + KP +QFLL WSFY+SM
Sbjct: 482 HHVNNAFKHNLQRMSAMEVWAEWLESIVDQVLAKYHDKPANVIANVGKQFLLNWSFYTSM 541
Query: 453 VIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVESS 510
+IRDLTLRSA SFGSF LIRLL D+YM+YLIE ++A A + I VI + + P+ ++
Sbjct: 542 IIRDLTLRSAMSFGSFTLIRLLADDYMYYLIESKIAKAGKQQLITVIRADKDWPLTTN 599
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 127 EDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLF 186
E++++ IY C L I +DF+++E W +FW N G + + +
Sbjct: 297 EELNSLIDIYEILCREILALIKNIDFASVEDTWSKFWSG---NFG--------VDRDHIS 345
Query: 187 CLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVT 224
L VQ ++ VD YQ +V+ LIP+ L + T
Sbjct: 346 ALCTLDQVQDYIIEVDLALYQTIVDTLIPNVLLSELST 383
>gi|341877898|gb|EGT33833.1| CBN-DAF-19 protein [Caenorhabditis brenneri]
Length = 913
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/298 (39%), Positives = 167/298 (56%), Gaps = 16/298 (5%)
Query: 219 LDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDF 278
L+ + ++ F ++E W+ FW DN + KL L VQ ++ D
Sbjct: 607 LELVKSVQFGSLEDTWKNFWSGSDN-----------VDHEKLLQLCTLEQVQNWIVECDL 655
Query: 279 LFYQNLVEVLIPDVL-RPIPGSLTSSIRNFAKGVESWLTNAMQGCP--QEMINIKVTAVG 335
+ YQ +V+ LIP VL + +T S R F K ++ +L AM +I K+ A+
Sbjct: 656 VLYQTIVDCLIPHVLLSELSAGMTQSCRTFGKNIDHYLRKAMSSGKVCDSLIKKKLQALK 715
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQ 395
Q L+RYTSLNHLA AAR VL Q QM D +VD V +QA W+C CD +LV+
Sbjct: 716 YMQQGLKRYTSLNHLAHAARGVLMKPEQCLQMAQDYAKVDIEAVHQQAGWICGCDGALVR 775
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKP--NFTKAARQFLLKWSFYSSMV 453
+ F+ L + +E WA WL+++V+ VL ++ P + +QFLL WSFY+SM+
Sbjct: 776 SINLAFQANLHGASPMERWAEWLESIVDQVLAKYQDHPAKDVENVGKQFLLNWSFYTSMI 835
Query: 454 IRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVESSQ 511
IRDLTLRSA SFGSF LIRLL D+YM+YLIE ++A A+ + I VI + P +Q
Sbjct: 836 IRDLTLRSAMSFGSFTLIRLLADDYMYYLIESKIAKASNQQLITVIRQDKEWPFPKTQ 893
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 102/265 (38%), Gaps = 61/265 (23%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGS--- 57
GNSKYHYYGIR+K +S L+++P+ + + Y P+ IP D
Sbjct: 428 GNSKYHYYGIRMKENSVLHSLPIQSQQSQIHQQVY-------TPPMQQIPQRDAYADTVN 480
Query: 58 -------------PRGKKYK------------LVKTDSNSNQYGSEGHTTAGQTNSNPSP 92
PR + +K + + Q +TTA + +P
Sbjct: 481 QVAAQKYIGAEMIPRKRSHKERSSSSPSDRDSNSPAELPNQQVFLNQNTTAARVIPTQNP 540
Query: 93 QSGN-----HNF-------LGDGSNAIPDFPEIDLS-EDCLPEDCTIED--VDTFRSIYR 137
N ++F +G +P+F ++ + D ++ +E +D F Y
Sbjct: 541 TVANAPTAPYSFTEEDKASMGTKGFEVPEFTQLHATLADIKFKNLNMEPGYLDLFVGDYT 600
Query: 138 EHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAF 197
C L+ + ++ F ++E W+ FW DN + KL L VQ +
Sbjct: 601 TMCMDTLELVKSVQFGSLEDTWKNFWSGSDN-----------VDHEKLLQLCTLEQVQNW 649
Query: 198 VRRVDFLFYQNLVEVLIPDAFLDAI 222
+ D + YQ +V+ LIP L +
Sbjct: 650 IVECDLVLYQTIVDCLIPHVLLSEL 674
>gi|341893435|gb|EGT49370.1| hypothetical protein CAEBREN_31487 [Caenorhabditis brenneri]
Length = 625
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 118/298 (39%), Positives = 167/298 (56%), Gaps = 16/298 (5%)
Query: 219 LDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDF 278
L+ + ++ F ++E W+ FW DN + KL L VQ ++ D
Sbjct: 319 LELVKSVQFGSLEDTWKNFWSGSDN-----------VDHEKLLQLCTLEQVQNWIVECDL 367
Query: 279 LFYQNLVEVLIPDVL-RPIPGSLTSSIRNFAKGVESWLTNAMQGCP--QEMINIKVTAVG 335
+ YQ +V+ LIP VL + +T S R F K ++ +L AM +I K+ A+
Sbjct: 368 VLYQTIVDCLIPHVLLSELSAGMTQSCRTFGKNIDHYLRKAMSSGKVCDSLIKKKLQALK 427
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQ 395
Q L+RYTSLNHLA AAR VL Q QM D +VD V +QA W+C CD +LV+
Sbjct: 428 YMQQGLKRYTSLNHLAHAARGVLMKPEQCLQMAQDYAKVDIEAVHQQAGWICGCDGALVR 487
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKP--NFTKAARQFLLKWSFYSSMV 453
+ F+ L + +E WA WL+++V+ VL ++ P + +QFLL WSFY+SM+
Sbjct: 488 SINLAFQANLHGASPMERWAEWLESIVDQVLAKYQDHPAKDVENVGKQFLLNWSFYTSMI 547
Query: 454 IRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVESSQ 511
IRDLTLRSA SFGSF LIRLL D+YM+YLIE ++A A+ + I VI + P +Q
Sbjct: 548 IRDLTLRSAMSFGSFTLIRLLADDYMYYLIESKIAKASNQQLITVIRQDKEWPFPKTQ 605
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 102/265 (38%), Gaps = 61/265 (23%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGS--- 57
GNSKYHYYGIR+K +S L+++P+ + + Y P+ IP D
Sbjct: 140 GNSKYHYYGIRMKENSVLHSLPIQSQQSQIHQQVY-------TPPMQQIPQRDAYADTVN 192
Query: 58 -------------PRGKKYK------------LVKTDSNSNQYGSEGHTTAGQTNSNPSP 92
PR + +K ++ + Q +TTA + +P
Sbjct: 193 QVAAQKYIGAEMIPRKRSHKERSSSSPSDRDSNSPSELPNQQVFLNQNTTAARVIPTQNP 252
Query: 93 QSGN-----HNF-------LGDGSNAIPDFPEIDLS-EDCLPEDCTIED--VDTFRSIYR 137
N ++F +G +P F ++ + D ++ +E +D F Y
Sbjct: 253 TVANAPTAPYSFTEEDKASMGTKGFEVPKFTQLHATLADIKFKNLNMEPGYLDMFVGDYT 312
Query: 138 EHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAF 197
C L+ + ++ F ++E W+ FW DN + KL L VQ +
Sbjct: 313 AMCMDTLELVKSVQFGSLEDTWKNFWSGSDN-----------VDHEKLLQLCTLEQVQNW 361
Query: 198 VRRVDFLFYQNLVEVLIPDAFLDAI 222
+ D + YQ +V+ LIP L +
Sbjct: 362 IVECDLVLYQTIVDCLIPHVLLSEL 386
>gi|47223610|emb|CAF99219.1| unnamed protein product [Tetraodon nigroviridis]
Length = 821
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 155/395 (39%), Positives = 191/395 (48%), Gaps = 92/395 (23%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYKLV-KTDSNSNQ-YGSEGH 80
GNSKYHYYGIRVKPDSPLN + + + R +++K V K DS S + Y G
Sbjct: 212 GNSKYHYYGIRVKPDSPLNRLQEDMQYMALRQQPVQQKQRFKPVQKFDSCSGENYSGGGQ 271
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
T G Q +H D S +PDF E++L E+ + ED +S+YREHC
Sbjct: 272 THPGAAEQTVIAQRQHHQQFLDASRPLPDFIELELGPSNT-ENISPEDGKALQSLYREHC 330
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEEKYLSKSKLFCLSKC 191
EA LD +V L FS IE LW+ FWR + D E E L S+L L +
Sbjct: 331 EAILDVVVNLQFSLIEKLWQTFWRYSPTDTVDGATVTENSSITEIEARLPSSQLMALCRN 390
Query: 192 VPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEE 251
V ++ D L YQ LVE+LIPD L I + E+
Sbjct: 391 EAVLKWMSTCDHLMYQALVEILIPD-VLRPIPS-------------------------EQ 424
Query: 252 EKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGV 311
+ + F PV +R F F P+ G+LT +IRNFAK +
Sbjct: 425 QSRTLQLHTF------PV--LMRACPFFF--------------PVSGALTQAIRNFAKSL 462
Query: 312 ESWLTNAMQGCPQEMINIKV--------------------------TAVGAFAQMLRRYT 345
E WL+NAM PQ MI KV AV AFAQ LRRYT
Sbjct: 463 EGWLSNAMNAIPQPMIQTKVEEEEASTFQLSKVHPGPNQACVFPQIAAVSAFAQTLRRYT 522
Query: 346 SLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQ 380
SLNHLAQAARAVLQN++QINQML+DLNRVDF NVQ
Sbjct: 523 SLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQ 557
>gi|308462035|ref|XP_003093304.1| CRE-DAF-19 protein [Caenorhabditis remanei]
gi|308250371|gb|EFO94323.1| CRE-DAF-19 protein [Caenorhabditis remanei]
Length = 665
Score = 221 bits (563), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 118/294 (40%), Positives = 167/294 (56%), Gaps = 16/294 (5%)
Query: 219 LDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDF 278
L + + F+++E +W FW +S L L VQ ++ + D
Sbjct: 360 LTLVKNVQFTSVEDVWARFWLGGGG-----------ISHESLSALCTLDRVQEYIIQADL 408
Query: 279 LFYQNLVEVLIPDVL-RPIPGSLTSSIRNFAKGVESWLTNAMQGCPQE--MINIKVTAVG 335
YQ +V+ LIP+VL + +T S R FAK ++ +L A+Q I K+ A+
Sbjct: 409 ALYQTIVDCLIPNVLLSELSAGMTQSCRTFAKNIDLYLKKALQDGKMTDGFIKKKLQAIK 468
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQ 395
Q L+RYTSLNHLA AAR VL Q QM D +VD + V +QA W+C CD+ +V
Sbjct: 469 YMQQGLKRYTSLNHLAHAARGVLMKEEQCQQMYQDYIKVDINTVHQQAGWICGCDSLMVT 528
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPN--FTKAARQFLLKWSFYSSMV 453
+ + FK LQQ + + WA WL+++V+ VL + KP + +QFLL WSFY+SM+
Sbjct: 529 HVNNAFKQNLQQMSPMSVWAEWLESIVDQVLAKYHDKPAEVVSNVGKQFLLNWSFYTSMI 588
Query: 454 IRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPV 507
IRDLTLRSA SFGSF LIRLL D+YM+YLIE ++A A + I VI ++ P+
Sbjct: 589 IRDLTLRSAMSFGSFTLIRLLADDYMYYLIESKIAKAGKQQLITVIRQEKDWPL 642
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 11/97 (11%)
Query: 126 IEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKL 185
I++++ Y C+ L + + F+++E +W FW +S L
Sbjct: 342 IDELNKLIDCYHFMCKEVLTLVKNVQFTSVEDVWARFWLGGGG-----------ISHESL 390
Query: 186 FCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAI 222
L VQ ++ + D YQ +V+ LIP+ L +
Sbjct: 391 SALCTLDRVQEYIIQADLALYQTIVDCLIPNVLLSEL 427
>gi|339248699|ref|XP_003373337.1| putative transcription factor RFX3 [Trichinella spiralis]
gi|316970569|gb|EFV54486.1| putative transcription factor RFX3 [Trichinella spiralis]
Length = 801
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 155/491 (31%), Positives = 230/491 (46%), Gaps = 106/491 (21%)
Query: 29 GNSKYHYYGIRVKPDSPLNN------IPLSDENGSPRGKKYKLVKTDS-NSNQYGSEGHT 81
GNSKYHYYGIR+KPDSPLN + S + P ++ + S NS Y + G
Sbjct: 187 GNSKYHYYGIRMKPDSPLNRFNEENMMTSSRQQQHPTPSNKRIARAQSVNSVIYSTTGEV 246
Query: 82 TAGQ--------TNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFR 133
+A Q S P+P +G+ F T+E+V +
Sbjct: 247 SARQHVINQERSNQSIPNPPTGSGPFE------------------------TVENVPSKL 282
Query: 134 SIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEE--EKYLSKSKLFCLSKC 191
I R++ A + + ++ + D + D E E + ++ +L C
Sbjct: 283 DIQRQYLGAGM----------VPNVMPPILKVADLDQLDLQVEHAETFFARYRLHCR--- 329
Query: 192 VPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNG----D 247
V + FV +VD L WR FW + N
Sbjct: 330 VQMTRFVEQVDLL-----------------------------WRCFWMTAGPLNTITDVS 360
Query: 248 ECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNF 307
+ L++ +L+ L P+ ++R +D FYQ +V VLI ++L+PIP LT SIRNF
Sbjct: 361 DSSPASGLTRGQLYNLCSMKPILEYIREMDCQFYQVVVNVLITNILKPIPTMLTQSIRNF 420
Query: 308 AKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQM 367
AK +E L+ ++ P+E+ N+K+ A +F Q+LRRYT LNH+AQAAR VLQNS+Q+NQM
Sbjct: 421 AKQLEPTLSAVLEDVPEELFNVKLDAGRSFGQILRRYTGLNHMAQAARGVLQNSSQMNQM 480
Query: 368 LTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLK 427
D +RV+F NV V L + E L N ++ + +N
Sbjct: 481 FADFSRVEFPNVLVLKFVVGTSRMGLFLRRE----LCPTNCNRIQNYTAEQQNFGTVGRM 536
Query: 428 PFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQV 487
G+ +F S ++R+LTLRSA SFGSFHLIRLL+DE +FY+IE ++
Sbjct: 537 APRGRRSF---------------STIMRELTLRSAPSFGSFHLIRLLFDELLFYIIEQRI 581
Query: 488 ALATGETPIAV 498
A A G+ +A+
Sbjct: 582 ASAVGQPAVAI 592
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 111/267 (41%), Gaps = 59/267 (22%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRG 60
GNSKYHYYGIR+KPDSPLN ++EN S S + P
Sbjct: 187 GNSKYHYYGIRMKPDSPLNR--FNEENMMTS--------------------SRQQQHPTP 224
Query: 61 KKYKLVKTDS-NSNQYGSEGHTTAGQ--------TNSNPSPQSGN--------------- 96
++ + S NS Y + G +A Q S P+P +G+
Sbjct: 225 SNKRIARAQSVNSVIYSTTGEVSARQHVINQERSNQSIPNPPTGSGPFETVENVPSKLDI 284
Query: 97 -HNFLGDGSNAIPD-FPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFST 154
+LG G +P+ P I D D +E +TF + YR HC + V
Sbjct: 285 QRQYLGAG--MVPNVMPPILKVADLDQLDLQVEHAETFFARYRLHCRVQMTRFV----EQ 338
Query: 155 IESLWREFWRSQDNNNG----DECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLV 210
++ LWR FW + N + L++ +L+ L P+ ++R +D FYQ +V
Sbjct: 339 VDLLWRCFWMTAGPLNTITDVSDSSPASGLTRGQLYNLCSMKPILEYIREMDCQFYQVVV 398
Query: 211 EVLIPDAFLDAIVTLDFSTIESLWREF 237
VLI + L I T+ +I + ++
Sbjct: 399 NVLITN-ILKPIPTMLTQSIRNFAKQL 424
>gi|296233095|ref|XP_002807861.1| PREDICTED: LOW QUALITY PROTEIN: MHC class II regulatory factor RFX1
[Callithrix jacchus]
Length = 830
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 109/213 (51%), Positives = 140/213 (65%), Gaps = 20/213 (9%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLS----------------KSK 259
+A +D +V L F+ +E+LW+ FWR N + E L+ +
Sbjct: 615 EAIVDVMVNLQFTLVETLWKTFWR----YNLSQPSEAPPLAVXVLPSTWEGRGGRRAXPQ 670
Query: 260 LFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAM 319
L + PV + + D + Q LV++ P PG+LT +IRNFAK +ESWLT+AM
Sbjct: 671 LILTPRFEPVLXWNKHCDNVLXQGLVKISCMMCCGPSPGALTQAIRNFAKSLESWLTHAM 730
Query: 320 QGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNV 379
P+EM+ +KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NV
Sbjct: 731 VNIPEEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANV 790
Query: 380 QEQASWVCQCDASLVQQLESDFKLTLQQQNSLE 412
QEQASWVC+C+ +VQ+LE DFK+TLQQQNSL+
Sbjct: 791 QEQASWVCRCEDRVVQRLEQDFKVTLQQQNSLD 823
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 79/144 (54%), Gaps = 11/144 (7%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDEN-----GSPRGKKYKLV---KTDSNSNQYGSEGH 80
GNSKYHYYG+R+K SPL + + D+ G P +K +L K + +N
Sbjct: 498 GNSKYHYYGLRIKASSPLLRL-MEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGQQ 556
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+ G S+ S Q + D S ++PDF E+DL LPE D+ F+ +YREHC
Sbjct: 557 QSTG--LSDISAQVQQYQQFLDASRSLPDFTELDLQGKVLPEGVGPGDIKAFQVLYREHC 614
Query: 141 EAFLDAIVTLDFSTIESLWREFWR 164
EA +D +V L F+ +E+LW+ FWR
Sbjct: 615 EAIVDVMVNLQFTLVETLWKTFWR 638
>gi|390478443|ref|XP_002761705.2| PREDICTED: DNA-binding protein RFX2 [Callithrix jacchus]
Length = 754
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 104/186 (55%), Positives = 129/186 (69%), Gaps = 8/186 (4%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 475 EATVDVVMNLQFHYIEKLWLSFWNSKASSSEDPTSLPASDEDPEGAVLPKDKLVSLCQCD 534
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 535 PILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 594
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQAS +
Sbjct: 595 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASSMV 654
Query: 388 QCDASL 393
D +L
Sbjct: 655 IRDLTL 660
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 112/213 (52%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLV-KTDSNSNQYGSEG-H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ KTDS + G H
Sbjct: 358 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSGLH 417
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T QT + QS +H D S+ P+FP DL C + T+ DV + +YR HC
Sbjct: 418 STPEQTMA---AQSQHHQQYIDVSHVFPEFPAPDLGASCCRKGITLHDVKALQLVYRRHC 474
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 475 EATVDVVMNLQFHYIEKLWLSFWNSKASSSEDPTSLPASDEDPEGAVLPKDKLVSLCQCD 534
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 535 PILRWMRSCDHILYQALVEILIPDVLRPVPSTL 567
>gi|90081822|dbj|BAE90192.1| unnamed protein product [Macaca fascicularis]
Length = 474
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 101/176 (57%), Positives = 124/176 (70%), Gaps = 8/176 (4%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 280 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 339
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 340 PILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 399
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA 383
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQA
Sbjct: 400 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQA 455
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 110/213 (51%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLVKTDSNSNQYGSEG--H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ + + GS H
Sbjct: 163 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSSLH 222
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T QT + QS +H D S+ P+FP DL L + T+ DV + +YR HC
Sbjct: 223 STPEQTMAA---QSQHHQQYIDVSHVFPEFPAPDLGSVLLQDGVTLHDVKALQLVYRRHC 279
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 280 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 339
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 340 PILRWMRSCDHILYQALVEILIPDVLRPVPSTL 372
>gi|313247433|emb|CBY15668.1| unnamed protein product [Oikopleura dioica]
Length = 581
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/280 (38%), Positives = 160/280 (57%), Gaps = 10/280 (3%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
+ LD ++ L F ++ W +FW Q E K+L+K K L V ++ +
Sbjct: 258 EQILDYVLGLQFDELKQYWHDFWHIQHY-------EGKHLAKEKFQTLLTIPGVSNWIYQ 310
Query: 276 VDFLFYQNLVEVLIPDVLRP-IPGSLTSSIRNFAKGVESWLTNAMQ-GCPQEMINIKVTA 333
D + Y+NLV+VLIPDVL+ +P + TS IR FA+ W+ +++ Q++I KV+A
Sbjct: 311 CDQILYKNLVDVLIPDVLKQDVPQTYTSQIRLFAREATKWMRESVETSIQQDIIEAKVSA 370
Query: 334 VGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASL 393
V F+ LRR TSL HL + AR +L N + Q DL ++D + EQ SWV +C
Sbjct: 371 VSHFSSTLRRLTSLTHLIREARPILNNQEIVQQKRADLEKIDIMKIHEQISWVTECPLET 430
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMV 453
VQ + S L S ++W +L +N+ L P PN+T A++F++ WS+YSSMV
Sbjct: 431 VQTIHSGMVGLLDTHASFDDWHVFLVKSINSCL-PERSHPNYTVKAKKFIMSWSYYSSMV 489
Query: 454 IRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGE 493
IRDLTLRS +FGSFHLIR+L DE + ++IE ++ E
Sbjct: 490 IRDLTLRSVQTFGSFHLIRMLLDELVSHVIEQKIQNTEAE 529
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 106/212 (50%), Gaps = 18/212 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKY--KLVKTDSNSNQYGSEGHTTAGQT 86
GNSKYHYYGI++K +S L+ I +D + + +K K K D +S + T + Q
Sbjct: 149 GNSKYHYYGIKIKENSQLHQIQ-NDPDFQSKVEKIAPKPSKKDKDSRK------TQSAQQ 201
Query: 87 NSNPSPQSGNHNFLGDGSNAIPDFPEID--LSEDCLPEDCTIEDVDTFRSIYREHCEAFL 144
N + + + ++GD + +P+FP++ LS + E+++ F YREHCE L
Sbjct: 202 IVNETNRKRHLEWVGDSNQNLPEFPQLSSMLSTSVIQFGVDDEEIELFEDAYREHCEQIL 261
Query: 145 DAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFL 204
D ++ L F ++ W +FW Q E K+L+K K L V ++ + D +
Sbjct: 262 DYVLGLQFDELKQYWHDFWHIQHY-------EGKHLAKEKFQTLLTIPGVSNWIYQCDQI 314
Query: 205 FYQNLVEVLIPDAFLDAIVTLDFSTIESLWRE 236
Y+NLV+VLIPD + S I RE
Sbjct: 315 LYKNLVDVLIPDVLKQDVPQTYTSQIRLFARE 346
>gi|443687265|gb|ELT90309.1| hypothetical protein CAPTEDRAFT_130437, partial [Capitella teleta]
Length = 142
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 92/112 (82%), Positives = 100/112 (89%)
Query: 389 CDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSF 448
CD S+VQQLE DFK TLQQQNSLE+W+ WL+ VVN L+P EG NF KAARQFLLKWSF
Sbjct: 1 CDDSVVQQLEMDFKKTLQQQNSLEQWSEWLEGVVNQCLQPHEGDTNFPKAARQFLLKWSF 60
Query: 449 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 61 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHKVAAATGETPIAVMG 112
>gi|345645049|gb|AEO12885.1| MIP29292p [Drosophila melanogaster]
Length = 717
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 87/138 (63%), Positives = 109/138 (78%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
++FLDA++ L+F+T+E L R+FWR+ DNNN DECEEEKYLSK+KL+ L C VQ FVR
Sbjct: 580 ESFLDAVLNLEFNTVEFLLRDFWRASDNNNLDECEEEKYLSKTKLYLLCHCAEVQKFVRE 639
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
VD+ FYQN V+V+IPDVLR IP +LT +IRNFAK +E WL +M G P+++ IK +AV
Sbjct: 640 VDYQFYQNTVDVIIPDVLRSIPNALTQAIRNFAKNLEIWLCESMLGVPEQLAQIKTSAVS 699
Query: 336 AFAQMLRRYTSLNHLAQA 353
AF Q LRRYTSLNHLAQA
Sbjct: 700 AFCQTLRRYTSLNHLAQA 717
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/228 (43%), Positives = 135/228 (59%), Gaps = 27/228 (11%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRG 60
GNSKYHYYGIR+KP S LN+ + D+ + Y P SD G P G
Sbjct: 447 GNSKYHYYGIRIKPGSLLNSQAMDDKQMLAAGYG---------------PSSDGTGGP-G 490
Query: 61 KKYKLVKTDSNSNQY---------GSEGHTTAGQTNS-NPSPQSGNHNFLGDGSNAIPDF 110
+ T S + Q + H+ + ++ P ++GDG++A+P F
Sbjct: 491 SGPMVSVTSSTAGQLTGSNGLGGGHGQRHSNGTKKHTFKPETYEACIQYIGDGTSALPSF 550
Query: 111 PEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNN 170
P I+L+ + T+EDVDTFR +YREHCE+FLDA++ L+F+T+E L R+FWR+ DNNN
Sbjct: 551 PPIELNH-SFNSELTLEDVDTFRGLYREHCESFLDAVLNLEFNTVEFLLRDFWRASDNNN 609
Query: 171 GDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
DECEEEKYLSK+KL+ L C VQ FVR VD+ FYQN V+V+IPD
Sbjct: 610 LDECEEEKYLSKTKLYLLCHCAEVQKFVREVDYQFYQNTVDVIIPDVL 657
>gi|256052839|ref|XP_002569957.1| rfx transcription factor [Schistosoma mansoni]
Length = 1015
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 85/124 (68%), Positives = 100/124 (80%), Gaps = 1/124 (0%)
Query: 378 NVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKP-NFT 436
++QEQASWVCQC S V QLE DFK LQ+ SLEEWA WL VV ++L+P EG +T
Sbjct: 502 DLQEQASWVCQCSDSTVSQLEHDFKRILQKHASLEEWAQWLDTVVTSILQPLEGNSLAYT 561
Query: 437 KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPI 496
+AA Q +LKWSFYSSMVIRDLTLRSA+SFGSFHLIRLLYDEY+FYL+EH+VA G TP+
Sbjct: 562 RAAHQLVLKWSFYSSMVIRDLTLRSASSFGSFHLIRLLYDEYIFYLVEHKVAAHLGMTPV 621
Query: 497 AVIG 500
AV+G
Sbjct: 622 AVMG 625
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 87/166 (52%), Gaps = 20/166 (12%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNN---IPLSDENGS 57
GNSKYHYYGIR+KP+SPLN+ E+ G S HY K S LNN I + +
Sbjct: 238 GNSKYHYYGIRIKPNSPLNHF---IEDAGFSLRHYPNYHHK--SMLNNNNYIGSGNVSSH 292
Query: 58 PRGKKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSE 117
+ V T+S ++ S GQ ++ +FLG+ S+A+P+ EI S
Sbjct: 293 STSQNIDSVTTNSITSPLLSSSGVGNGQHHA---------HFLGEASSALPNLDEICRSS 343
Query: 118 DCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFW 163
LP EDV TF +Y LDA+V LDF++IE++W+ FW
Sbjct: 344 G-LPVPS--EDVITFCRLYALSAGYMLDAVVNLDFTSIETVWKAFW 386
>gi|326433856|gb|EGD79426.1| hypothetical protein PTSG_09994 [Salpingoeca sp. ATCC 50818]
Length = 356
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 117/302 (38%), Positives = 161/302 (53%), Gaps = 39/302 (12%)
Query: 202 DFLFYQNLVEV----LIPDAFLDAIVTLDFSTIESLWRE---FWRSQDNNNGDECEEEKY 254
DFL + N E L+ LDAI ES WRE F R D ++G EKY
Sbjct: 52 DFLNFYNTYETQLLELVETNQLDAIGPF----WESQWREASRFSRILDTDDG-----EKY 102
Query: 255 LSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESW 314
VR D +Q ++ +++PDVL+ + ++T SIR+F+K ++ W
Sbjct: 103 ----------------CHVR--DTFIFQRMLSIILPDVLQRMQPAVTKSIRSFSKRLQPW 144
Query: 315 LTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRV 374
+ A+ P + + K+ FAQ LRRYT LNHLAQAAR +L Q+ M D ++
Sbjct: 145 MHAAVAALPPRVAHSKIRTTALFAQRLRRYTGLNHLAQAARDLLAKQHQVAAMNEDFVKI 204
Query: 375 DFHNVQEQASWVC-QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVL----KPF 429
DF+ V +Q +C C V QL +F+ L+ LE W +WL++V + VL +P
Sbjct: 205 DFNAVADQLVSMCPSCAKHTVIQLHEEFQHVLRDAAPLESWCSWLQSVAHTVLSQQQQPG 264
Query: 430 EGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAL 489
+ K A L WSF SS VIRDLTLRSAA+FG FHL+RL DEYMF+L EH V++
Sbjct: 265 SNGVDLAKPAANLCLSWSFLSSQVIRDLTLRSAATFGMFHLMRLFCDEYMFFLAEHVVSV 324
Query: 490 AT 491
T
Sbjct: 325 NT 326
>gi|355755529|gb|EHH59276.1| Transcription factor RFX1, partial [Macaca fascicularis]
Length = 756
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/169 (54%), Positives = 113/169 (66%), Gaps = 17/169 (10%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC----EEEKYLSKSKLFCLSKCVPVQA 271
+A +D +V L F+ +E+LW+ FWR + + E EK L K+ L LSK PV
Sbjct: 601 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLHDEAEKRLPKAILVLLSKFEPVLQ 660
Query: 272 FVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKV 331
+ + D DVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +KV
Sbjct: 661 WTKHCD-------------DVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRVKV 707
Query: 332 TAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQ 380
A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQ
Sbjct: 708 AAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQ 756
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 102/206 (49%), Gaps = 21/206 (10%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDEN-----GSPRGKKYKLV---KTDSNSNQYGSEGH 80
GNSKYHYYG+R+K SPL + + D+ G P +K +L K + +N
Sbjct: 484 GNSKYHYYGLRIKASSPLLRL-MEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGQQ 542
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+ G S+ S Q + D S ++PDF E+DL LPE D+ F+ +YREHC
Sbjct: 543 PSTG--LSDISAQVQQYQQFLDASRSLPDFTELDLQGKVLPEGVGPGDIKAFQVLYREHC 600
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC----EEEKYLSKSKLFCLSKCVPVQA 196
EA +D +V L F+ +E+LW+ FWR + + E EK L K+ L LSK PV
Sbjct: 601 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLHDEAEKRLPKAILVLLSKFEPVLQ 660
Query: 197 FVRRVDFLFYQNLVEVLIPDAFLDAI 222
+ + D + IP A AI
Sbjct: 661 WTKHCDDVLRP------IPSALTQAI 680
>gi|156367542|ref|XP_001627475.1| predicted protein [Nematostella vectensis]
gi|156214386|gb|EDO35375.1| predicted protein [Nematostella vectensis]
Length = 410
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 156/275 (56%), Gaps = 21/275 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD I+ +F +++ FW+ S + + C V + D
Sbjct: 147 ILDTILRANFGEVQNFLVHFWQGM---------------PSHMLEVLGCSDVVDLIGVCD 191
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VLIP L+P+P SLT +IR+FAK + WL ++ P + K++ +F
Sbjct: 192 GILYKAISGVLIPGTLQPLPASLTQAIRHFAKQLGRWLEESLAHLPAPLQQRKLSVAKSF 251
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWV----CQCDASL 393
A LRR TSL HLAQAAR VL ++ + QML D ++DF + QA W + D +
Sbjct: 252 AHSLRRQTSLTHLAQAARTVLHSAEPVTQMLQDWKQIDFEGIARQAMWTFSQNVEKDYAK 311
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVN-AVLKPFEGK-PNFTKAARQFLLKWSFYSS 451
++++ ++F L QQ +++++A W ++V+ V K E + ++ K A+ FLLKWSF+S
Sbjct: 312 IKEIHTEFTQLLDQQATIDQYAEWASSLVDRCVTKRVEKEGSSYQKCAQDFLLKWSFFSI 371
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
++R+LTL SA SFGSFHL+ +L ++Y+ +++E+Q
Sbjct: 372 RIVRELTLHSAHSFGSFHLLHMLLEDYILFIVENQ 406
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 74/187 (39%), Gaps = 41/187 (21%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI +K SP ++ T N+ + S GH+
Sbjct: 59 GQSKYHYYGITIKTTSPYHD-------------------TVCNAARQSSSGHSVTKSAQG 99
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIV 148
+ S + G +P FP ++ LP + + + V TF +YR HC+ LD I+
Sbjct: 100 SSSSL-----IVAPGGTLLPSFPSVN--HLNLPAEVSRDKVKTFLIMYRAHCQRILDTIL 152
Query: 149 TLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQN 208
+F +++ FW+ S + + C V + D + Y+
Sbjct: 153 RANFGEVQNFLVHFWQGM---------------PSHMLEVLGCSDVVDLIGVCDGILYKA 197
Query: 209 LVEVLIP 215
+ VLIP
Sbjct: 198 ISGVLIP 204
>gi|326434373|gb|EGD79943.1| hypothetical protein PTSG_10225 [Salpingoeca sp. ATCC 50818]
Length = 738
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 155/292 (53%), Gaps = 26/292 (8%)
Query: 195 QAFVRRVDF--LFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEE 252
Q F + DF ++ N EVL A+ + +F ++ +W +FW S + E
Sbjct: 247 QGFSAKEDFSKPYHANCKEVL------RAVASGEFDRVQQIWNQFWGSIAAHFKTVLGTE 300
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L V R D +F+ L ++L+ +VL+PIP L IR F K +E
Sbjct: 301 AGLQT---------------VLRCDDIFHNTLKKMLVGNVLQPIPEHLVKQIRFFGKRLE 345
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
W+ A++G P ++ K T V A +LRRYTSLNHL A++AVL + + M+ DL
Sbjct: 346 PWIKTALEGLPASLVQAKATKVRNLAHLLRRYTSLNHLCCASKAVLDDHRSVQVMVRDLR 405
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
+ F +++ Q S + +C Q + F+ L + S++ WA WL+ +V +K G
Sbjct: 406 CISFDSIKMQVSMLGRCRRLNPQHVLDAFERQLTNKVSMDVWAAWLQQLVWEDIK---GV 462
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
+ AR F+ W+ YSS ++RDLTLRSA SFGS+HL RL++DE + +LIE
Sbjct: 463 SDPIAHARSFVRVWTAYSSALMRDLTLRSAESFGSYHLCRLVFDEILIFLIE 514
>gi|167520013|ref|XP_001744346.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777432|gb|EDQ91049.1| predicted protein [Monosiga brevicollis MX1]
Length = 214
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 123/206 (59%), Gaps = 1/206 (0%)
Query: 272 FVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKV 331
+ R+ D Y+ V++L+PDVL+ +R F+K +E W+ A P K
Sbjct: 9 YARQHDRNVYERAVDLLLPDVLQRCSPHFAKLVRTFSKRLEEWMEKATANLPTTFGEAKR 68
Query: 332 TAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQ-CD 390
+ FA LRR+T+LNHL+ AARAVL + + M D ++VDF +++EQ W+C+ C
Sbjct: 69 LELSLFAHRLRRHTALNHLSTAARAVLAQESHVQTMCDDYSKVDFESIKEQLLWLCEDCS 128
Query: 391 ASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYS 450
A ++ ++E+ FK ++E WA WL+ VV VL P+ P+ A +F LKWS +
Sbjct: 129 AQMLVEMEAKFKTMQASATTVEAWAAWLQGVVQQVLGPYFKTPDLAARAGEFQLKWSTLT 188
Query: 451 SMVIRDLTLRSAASFGSFHLIRLLYD 476
S+VIRDLTLRSA SFG +HL+RLL D
Sbjct: 189 SLVIRDLTLRSATSFGMYHLMRLLSD 214
>gi|395538373|ref|XP_003771157.1| PREDICTED: transcription factor RFX4 [Sarcophilus harrisii]
Length = 767
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 148/273 (54%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + + + V V D
Sbjct: 244 ILDTVIRANFDEVQSFLLHFWQGMPPH---------------MLPVLGSSTVVNIVGVCD 288
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 289 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 348
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC----QCDASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD ++ +Q + + L
Sbjct: 349 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLSSITKQTLYTMEDSREAHRKL 408
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVN-AVLKPFEGKP-NFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ V+K +P + K A+QFLL WS + +
Sbjct: 409 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRPGSLKKVAQQFLLMWSCFGT 468
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 469 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 501
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 155 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSESGKKEVSKQTV 198
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 199 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 248
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 249 IRANFDEVQSFLLHFWQ 265
>gi|118082811|ref|XP_416306.2| PREDICTED: transcription factor RFX4 [Gallus gallus]
Length = 784
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 150/273 (54%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 261 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 305
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 306 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 365
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 366 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSREEHRKL 425
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVN-AVLKPFEGKP-NFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL ++V+ V+K +P + K A+QFLL WS + +
Sbjct: 426 IIQLYQEFDHLLEEQSPIESYIEWLDSMVDRCVVKVAAKRPGSLKKVAQQFLLMWSCFGT 485
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 486 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 518
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK +S + Y ++ + + G +
Sbjct: 172 GQSKYHYYGIAVKENS----------------QYYDVMYSKKGAAWVNETGKKEVTKQTV 215
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 216 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 265
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 266 IRANFDEVQSFLLHFWQ 282
>gi|126339786|ref|XP_001374936.1| PREDICTED: transcription factor RFX4 [Monodelphis domestica]
Length = 732
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 149/273 (54%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 209 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 253
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 254 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 313
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 314 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSREEHRKL 373
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVN-AVLKPFEGKP-NFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ V+K +P + K A+QFLL WS + +
Sbjct: 374 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRPGSLKKVAQQFLLMWSCFGT 433
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 434 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 466
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 120 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSESGKKEVSKQTV 163
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 164 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 213
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 214 IRANFDEVQSFLLHFWQ 230
>gi|326912145|ref|XP_003202414.1| PREDICTED: transcription factor RFX4-like [Meleagris gallopavo]
Length = 790
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 150/273 (54%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 267 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 311
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 312 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 371
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 372 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSREEHRKL 431
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVN-AVLKPFEGKP-NFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL ++V+ V+K +P + K A+QFLL WS + +
Sbjct: 432 IIQLYQEFDHLLEEQSPIESYIEWLDSMVDRCVVKVAAKRPGSLKKVAQQFLLMWSCFGT 491
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 492 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 524
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK +S + Y ++ + + G +
Sbjct: 178 GQSKYHYYGIAVKENS----------------QYYDVMYSKKGAAWVNETGKKEVTKQTV 221
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 222 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 271
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 272 IRANFDEVQSFLLHFWQ 288
>gi|327272328|ref|XP_003220937.1| PREDICTED: transcription factor RFX4-like [Anolis carolinensis]
Length = 745
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 147/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 223 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 267
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 268 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 327
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 328 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSREEHRKL 387
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL ++V+ + K + K A+QFLL WS + +
Sbjct: 388 IMQLYQEFDHLLEEQSPIESYVEWLDSMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 447
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 448 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 480
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 134 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVNETGKKEVTKQTV 177
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 178 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 227
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 228 IRANFDEVQSFLLHFWQ 244
>gi|449685102|ref|XP_002163641.2| PREDICTED: transcription factor RFX4-like [Hydra magnipapillata]
Length = 578
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 155/271 (57%), Gaps = 20/271 (7%)
Query: 219 LDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDF 278
LD I +F +++ FW +G LS + L KC D
Sbjct: 179 LDTIFRANFGEVQNFLIHFW------HGMPSHIAVVLSNKNVIELIKCC---------DV 223
Query: 279 LFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFA 338
+ Y+ + VLIP L+P+P SL+ +I++FAK + +L A+ P ++ K++ F
Sbjct: 224 ILYKAVSSVLIPTSLQPLPSSLSQAIQHFAKQLPIYLEMALYHLPHDLQIKKISVANIFT 283
Query: 339 QMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWV----CQCDASLV 394
Q L R TSL+HLAQA++ VL N+ ++QM+ D+ + ++ + ++ + D +V
Sbjct: 284 QSLLRQTSLSHLAQASKTVLHNNEHLSQMIADIRTIKSDDICKYVVFISREKVERDVRIV 343
Query: 395 QQLESDFKLTLQQQNSLEEWANWLKNVVNA-VLKPFEGKPNFTKAARQFLLKWSFYSSMV 453
++L S+F ++Q ++EE+ W+ +VV+ V KP E F A++FLLKW++ +S +
Sbjct: 344 EKLFSEFDNLFERQATIEEYTFWISSVVSRYVTKPSESVAKFQSLAQEFLLKWTYVTSKI 403
Query: 454 IRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
I++LTLRSA SFGSFHL+ + +++Y+FYLIE
Sbjct: 404 IQELTLRSAKSFGSFHLVLMFFNDYIFYLIE 434
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 74/190 (38%), Gaps = 31/190 (16%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHY+GI VK S + +S + +K S + + + +
Sbjct: 80 GKSKYHYFGICVKKTSVYYDQTIS----------FNHLKVQSTLTETSKKNDSKSDIIE- 128
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIV 148
P + N L +P FP D + +D T++ V T +YR HC+ LD I
Sbjct: 129 ---PSRDHENLLLSNGALLPPFPSFD--SVIVEDDSTLDKVKTLLIMYRAHCQRILDTIF 183
Query: 149 TLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQN 208
+F +++ FW +G LS + L KC D + Y+
Sbjct: 184 RANFGEVQNFLIHFW------HGMPSHIAVVLSNKNVIELIKC---------CDVILYKA 228
Query: 209 LVEVLIPDAF 218
+ VLIP +
Sbjct: 229 VSSVLIPTSL 238
>gi|410907714|ref|XP_003967336.1| PREDICTED: transcription factor RFX4-like [Takifugu rubripes]
Length = 736
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 147/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 212 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKIALHDLPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDA----SL 393
+Q+L+R TSLNHL QA+R V+ N+ QML D VD +++ +Q + + L
Sbjct: 317 SQILKRQTSLNHLCQASRTVINNADITFQMLEDWRNVDLNSITKQTLYTMEDSQEEHRQL 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK-PN-FTKAARQFLLKWSFYSS 451
+ L +F L++Q+ +E + WL ++V+ + GK P K A+QFLL WS + +
Sbjct: 377 IVHLYQEFDRLLEEQSPIEAYIEWLDSMVDRCVVKVAGKRPGCLKKVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 437 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 469
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKETS----------------QYYDVMYSKKGAAWVNETGKKEVTKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 167 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEERVSTFIMMYRTHCQRILDTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>gi|331999966|ref|NP_001193620.1| transcription factor RFX4 isoform d [Homo sapiens]
gi|114646709|ref|XP_509336.2| PREDICTED: transcription factor RFX4 isoform 6 [Pan troglodytes]
gi|397525264|ref|XP_003832594.1| PREDICTED: transcription factor RFX4 isoform 2 [Pan paniscus]
Length = 744
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 221 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 265
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 266 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 325
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 326 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 385
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 386 ITQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 445
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 446 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 478
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 132 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 175
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 176 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 225
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 226 IRANFDEVQSFLLHFWQ 242
>gi|23428950|gb|AAM52484.1| winged-helix transcription factor RFX4 variant 3 [Homo sapiens]
Length = 735
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 212 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 317 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 377 ITQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 437 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 469
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 167 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>gi|81157962|dbj|BAE48231.1| regulatory factor X4, isoform c [Homo sapiens]
Length = 744
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 221 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 265
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 266 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 325
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 326 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 385
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 386 ITQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 445
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 446 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 478
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 132 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 175
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 176 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 225
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 226 IRANFDEVQSFLLHFWQ 242
>gi|81157964|dbj|BAE48232.1| regulatory factor X4, isoform d [Homo sapiens]
Length = 735
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 212 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 317 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 377 ITQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 437 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 469
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 167 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>gi|47132527|ref|NP_998759.1| transcription factor RFX4 isoform c [Homo sapiens]
gi|332840240|ref|XP_001161826.2| PREDICTED: transcription factor RFX4 isoform 4 [Pan troglodytes]
gi|397525262|ref|XP_003832593.1| PREDICTED: transcription factor RFX4 isoform 1 [Pan paniscus]
gi|332278145|sp|Q33E94.2|RFX4_HUMAN RecName: Full=Transcription factor RFX4; AltName: Full=Regulatory
factor X 4; AltName: Full=Testis development protein
NYD-SP10
gi|119618188|gb|EAW97782.1| regulatory factor X, 4 (influences HLA class II expression),
isoform CRA_a [Homo sapiens]
gi|158256326|dbj|BAF84134.1| unnamed protein product [Homo sapiens]
Length = 735
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 212 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 317 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 377 ITQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 437 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 469
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 167 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>gi|332241694|ref|XP_003270013.1| PREDICTED: transcription factor RFX4 isoform 2 [Nomascus
leucogenys]
Length = 735
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 212 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 317 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 377 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKMAAKRQGSLKKVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 437 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 469
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 167 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>gi|449482010|ref|XP_002196607.2| PREDICTED: transcription factor RFX4 [Taeniopygia guttata]
Length = 807
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 147/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 284 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 328
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 329 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 388
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 389 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSREEHRKL 448
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL ++V+ + K + K A+QFLL WS + +
Sbjct: 449 IIQLYQEFDHLLEEQSPIESYIEWLDSMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 508
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 509 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 541
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK +S + Y ++ + + G +
Sbjct: 195 GQSKYHYYGIAVKENS----------------QYYDVMYSKKGAAWVNETGKKEVTKQTV 238
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 239 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 288
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 289 IRANFDEVQSFLLHFWQ 305
>gi|13272522|gb|AAK17191.1|AF332192_1 transcription factor NYD-sp10 [Homo sapiens]
Length = 641
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 118 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 162
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 163 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 222
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 223 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 282
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 283 ITQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRRGSLKKVAQQFLLMWSCFGT 342
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 343 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 375
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 27/133 (20%)
Query: 33 YHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSP 92
YHYYGI VK S + Y ++ + + G + SP
Sbjct: 33 YHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTVAYSP 76
Query: 93 QSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLD 151
+S LG +P+FP + DL+ LP E V TF +YR HC+ LD ++ +
Sbjct: 77 RSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTVIRAN 126
Query: 152 FSTIESLWREFWR 164
F ++S FW+
Sbjct: 127 FDEVQSFLLHFWQ 139
>gi|19743886|ref|NP_115880.2| transcription factor RFX4 isoform a [Homo sapiens]
gi|114646713|ref|XP_001161866.1| PREDICTED: transcription factor RFX4 isoform 5 [Pan troglodytes]
gi|21040409|gb|AAH30644.1| Regulatory factor X, 4 (influences HLA class II expression) [Homo
sapiens]
gi|119618190|gb|EAW97784.1| regulatory factor X, 4 (influences HLA class II expression),
isoform CRA_c [Homo sapiens]
gi|123979856|gb|ABM81757.1| regulatory factor X, 4 (influences HLA class II expression)
[synthetic construct]
gi|123994621|gb|ABM84912.1| regulatory factor X, 4 (influences HLA class II expression)
[synthetic construct]
gi|189055077|dbj|BAG38061.1| unnamed protein product [Homo sapiens]
Length = 641
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 118 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 162
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 163 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 222
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 223 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 282
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 283 ITQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 342
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 343 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 375
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 27/133 (20%)
Query: 33 YHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSP 92
YHYYGI VK S + Y ++ + + G + SP
Sbjct: 33 YHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTVAYSP 76
Query: 93 QSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLD 151
+S LG +P+FP + DL+ LP E V TF +YR HC+ LD ++ +
Sbjct: 77 RSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTVIRAN 126
Query: 152 FSTIESLWREFWR 164
F ++S FW+
Sbjct: 127 FDEVQSFLLHFWQ 139
>gi|395819920|ref|XP_003783326.1| PREDICTED: transcription factor RFX4 isoform 1 [Otolemur garnettii]
Length = 735
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 212 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 317 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 377 IIQLYQEFDHLLEEQSPIESYVEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 437 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 469
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 167 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>gi|354486334|ref|XP_003505336.1| PREDICTED: transcription factor RFX4-like isoform 2 [Cricetulus
griseus]
Length = 736
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 212 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDAS----L 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 317 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRRL 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKP--NFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 377 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKKQGSLKKVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 437 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 469
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKREVTKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +PDFP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 167 AYSPRSK----LG---TLLPDFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>gi|20306254|gb|AAH28582.1| Regulatory factor X, 4 (influences HLA class II expression) [Homo
sapiens]
Length = 641
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 118 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 162
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 163 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 222
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 223 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 282
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 283 ITQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 342
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 343 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 375
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 27/133 (20%)
Query: 33 YHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSP 92
YHYYGI VK S + Y ++ + + G + SP
Sbjct: 33 YHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTVAYSP 76
Query: 93 QSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLD 151
+S LG +P+FP + DL+ LP E V TF +YR HC+ LD ++ +
Sbjct: 77 RSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTVIRAN 126
Query: 152 FSTIESLWREFWR 164
F ++S FW+
Sbjct: 127 FDEVQSFLLHFWQ 139
>gi|395819922|ref|XP_003783327.1| PREDICTED: transcription factor RFX4 isoform 2 [Otolemur garnettii]
Length = 744
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 221 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 265
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 266 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 325
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 326 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 385
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 386 IIQLYQEFDHLLEEQSPIESYVEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 445
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 446 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 478
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 132 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 175
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 176 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 225
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 226 IRANFDEVQSFLLHFWQ 242
>gi|449276421|gb|EMC84953.1| Transcription factor RFX4, partial [Columba livia]
Length = 733
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 147/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 210 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 254
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 255 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 314
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 315 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSREEHRKL 374
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL ++V+ + K + K A+QFLL WS + +
Sbjct: 375 IIQLYREFDHLLEEQSPIESYIEWLDSMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 434
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 435 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 467
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK +S + Y ++ + + G +
Sbjct: 121 GQSKYHYYGIAVKENS----------------QYYDVMYSKKGAAWVNETGKKEVTKQTV 164
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 165 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 214
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 215 IRANFDEVQSFLLHFWQ 231
>gi|344266578|ref|XP_003405357.1| PREDICTED: transcription factor RFX4 [Loxodonta africana]
Length = 641
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 118 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 162
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 163 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 222
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 223 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 282
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 283 ITQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 342
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 343 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 375
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 27/133 (20%)
Query: 33 YHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSP 92
YHYYGI VK S + Y ++ + + G + SP
Sbjct: 33 YHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTVAYSP 76
Query: 93 QSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLD 151
+S LG +P+FP + DL+ LP E V TF +YR HC+ LD ++ +
Sbjct: 77 RSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTVIRAN 126
Query: 152 FSTIESLWREFWR 164
F ++S FW+
Sbjct: 127 FDEVQSFLLHFWQ 139
>gi|345326790|ref|XP_001508397.2| PREDICTED: transcription factor RFX4-like [Ornithorhynchus
anatinus]
Length = 825
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 301 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 345
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 346 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 405
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 406 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 465
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 466 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 525
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 526 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 558
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 212 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 255
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 256 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 305
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 306 IRANFDEVQSFLLHFWQ 322
>gi|403275976|ref|XP_003929694.1| PREDICTED: transcription factor RFX4 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 735
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 212 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 317 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 377 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 437 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 469
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 167 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>gi|355564642|gb|EHH21142.1| hypothetical protein EGK_04144 [Macaca mulatta]
gi|355786485|gb|EHH66668.1| hypothetical protein EGM_03707 [Macaca fascicularis]
Length = 747
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 221 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 265
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 266 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 325
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 326 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 385
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 386 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDHCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 445
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 446 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 478
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 132 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 175
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 176 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 225
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 226 IRANFDEVQSFLLHFWQ 242
>gi|402887519|ref|XP_003907139.1| PREDICTED: transcription factor RFX4 isoform 2 [Papio anubis]
Length = 747
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 221 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 265
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 266 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 325
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 326 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 385
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 386 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 445
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 446 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 478
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 132 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 175
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 176 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 225
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 226 IRANFDEVQSFLLHFWQ 242
>gi|338721228|ref|XP_003364334.1| PREDICTED: transcription factor RFX4 isoform 3 [Equus caballus]
Length = 743
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 221 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 265
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 266 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 325
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 326 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 385
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 386 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 445
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 446 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 478
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 132 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 175
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 176 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 225
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 226 IRANFDEVQSFLLHFWQ 242
>gi|194226740|ref|XP_001499083.2| PREDICTED: transcription factor RFX4 isoform 1 [Equus caballus]
Length = 734
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 212 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 317 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 377 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 437 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 469
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 167 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>gi|22760669|dbj|BAC11288.1| unnamed protein product [Homo sapiens]
Length = 592
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 69 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 113
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 114 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 173
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 174 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 233
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 234 ITQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKEAQQFLLMWSCFGT 293
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 294 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 326
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 107 IPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWR 164
+P+FP + DL+ LP E V TF +YR HC+ LD ++ +F ++S FW+
Sbjct: 35 LPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTVIRANFDEVQSFLLHFWQ 90
>gi|402887517|ref|XP_003907138.1| PREDICTED: transcription factor RFX4 isoform 1 [Papio anubis]
Length = 738
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 212 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 317 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 377 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 437 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 469
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 167 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>gi|386782235|ref|NP_001247990.1| transcription factor RFX4 [Macaca mulatta]
gi|380815328|gb|AFE79538.1| transcription factor RFX4 isoform c [Macaca mulatta]
Length = 738
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 212 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 317 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 377 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDHCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 437 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 469
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 167 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>gi|403275978|ref|XP_003929695.1| PREDICTED: transcription factor RFX4 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 652
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 129 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 173
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 174 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 233
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 234 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 293
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 294 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 353
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 354 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 386
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 40 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 83
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 84 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 133
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 134 IRANFDEVQSFLLHFWQ 150
>gi|332241696|ref|XP_003270014.1| PREDICTED: transcription factor RFX4 isoform 3 [Nomascus
leucogenys]
Length = 592
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 69 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 113
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 114 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 173
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 174 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 233
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 234 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKMAAKRQGSLKKVAQQFLLMWSCFGT 293
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 294 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 326
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 107 IPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWR 164
+P+FP + DL+ LP E V TF +YR HC+ LD ++ +F ++S FW+
Sbjct: 35 LPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTVIRANFDEVQSFLLHFWQ 90
>gi|297692823|ref|XP_002823731.1| PREDICTED: transcription factor RFX4 isoform 1 [Pongo abelii]
Length = 744
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 221 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 265
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 266 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 325
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 326 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 385
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 386 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 445
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 446 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 478
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 132 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 175
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 176 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 225
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 226 IRANFDEVQSFLLHFWQ 242
>gi|426225181|ref|XP_004006746.1| PREDICTED: transcription factor RFX4 isoform 3 [Ovis aries]
Length = 744
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 221 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 265
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 266 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 325
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 326 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDTRDEHRKL 385
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 386 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 445
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 446 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 478
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 132 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 175
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 176 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 225
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 226 IRANFDEVQSFLLHFWQ 242
>gi|332241692|ref|XP_003270012.1| PREDICTED: transcription factor RFX4 isoform 1 [Nomascus
leucogenys]
Length = 641
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 118 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 162
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 163 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 222
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 223 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 282
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 283 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKMAAKRQGSLKKVAQQFLLMWSCFGT 342
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 343 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 375
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 27/133 (20%)
Query: 33 YHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSP 92
YHYYGI VK S + Y ++ + + G + SP
Sbjct: 33 YHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTVAYSP 76
Query: 93 QSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLD 151
+S LG +P+FP + DL+ LP E V TF +YR HC+ LD ++ +
Sbjct: 77 RSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTVIRAN 126
Query: 152 FSTIESLWREFWR 164
F ++S FW+
Sbjct: 127 FDEVQSFLLHFWQ 139
>gi|297692825|ref|XP_002823732.1| PREDICTED: transcription factor RFX4 isoform 2 [Pongo abelii]
Length = 735
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 212 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 317 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 377 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 437 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 469
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 167 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>gi|410965429|ref|XP_003989250.1| PREDICTED: transcription factor RFX4 isoform 1 [Felis catus]
Length = 735
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 212 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 317 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 377 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 437 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 469
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 167 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>gi|14278918|dbj|BAB59001.1| transcription factor RFX4 [Homo sapiens]
gi|119618189|gb|EAW97783.1| regulatory factor X, 4 (influences HLA class II expression),
isoform CRA_b [Homo sapiens]
Length = 563
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 221 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 265
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 266 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 325
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 326 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 385
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 386 ITQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 445
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 446 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 478
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 132 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 175
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 176 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 225
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 226 IRANFDEVQSFLLHFWQ 242
>gi|345777139|ref|XP_851020.2| PREDICTED: transcription factor RFX4 isoform 2 [Canis lupus
familiaris]
Length = 735
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 212 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 317 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 377 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 437 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 469
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 167 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>gi|426225177|ref|XP_004006744.1| PREDICTED: transcription factor RFX4 isoform 1 [Ovis aries]
Length = 735
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 212 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 317 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDTRDEHRKL 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 377 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 437 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 469
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 167 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>gi|410965431|ref|XP_003989251.1| PREDICTED: transcription factor RFX4 isoform 2 [Felis catus]
Length = 744
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 221 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 265
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 266 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 325
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 326 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 385
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 386 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 445
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 446 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 478
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 132 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 175
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 176 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 225
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 226 IRANFDEVQSFLLHFWQ 242
>gi|296212784|ref|XP_002752987.1| PREDICTED: transcription factor RFX4 [Callithrix jacchus]
Length = 641
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 118 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 162
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 163 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 222
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 223 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 282
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 283 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 342
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 343 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 375
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 27/133 (20%)
Query: 33 YHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSP 92
YHYYGI VK S + Y ++ + + G + SP
Sbjct: 33 YHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTVAYSP 76
Query: 93 QSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLD 151
+S LG +P+FP + DL+ LP E V TF +YR HC+ LD ++ +
Sbjct: 77 RSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTVIRAN 126
Query: 152 FSTIESLWREFWR 164
F ++S FW+
Sbjct: 127 FDEVQSFLLHFWQ 139
>gi|392349309|ref|XP_576205.4| PREDICTED: transcription factor RFX4-like [Rattus norvegicus]
Length = 681
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 145/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 199 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 243
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 244 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 303
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDAS----L 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD ++ +Q + + L
Sbjct: 304 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLSSITKQTLYTMEDSRDEHRRL 363
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 364 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 423
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 424 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 456
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 110 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKREVTKQTV 153
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +PDFP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 154 AYSPRSK----LG---TLLPDFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 203
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 204 IRANFDEVQSFLLHFWQ 220
>gi|301629668|ref|XP_002943959.1| PREDICTED: transcription factor RFX4-like, partial [Xenopus
(Silurana) tropicalis]
Length = 626
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 149/273 (54%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 107 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 151
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 152 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSKRF 211
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q+ + + L
Sbjct: 212 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQSLYTIEDSREEHRKL 271
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKP--NFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + +WL ++V+ + K + K A+QFLL WS + +
Sbjct: 272 IIQLYLEFDHLLEEQSPIESYIDWLDSMVDRCVVNVASKKQGSLKKVAQQFLLIWSCFGT 331
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 332 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 364
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 18 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVNETGKKEVTKQTV 61
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E + TF +YR HC+ LD +
Sbjct: 62 AYSPRSK----LG---TLLPEFPNVKDLN---LPSSLPEEKISTFIMMYRTHCQRILDTV 111
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 112 IRANFDEVQSFLLHFWQ 128
>gi|345777142|ref|XP_003431559.1| PREDICTED: transcription factor RFX4 [Canis lupus familiaris]
Length = 744
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 221 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 265
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 266 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 325
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 326 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 385
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 386 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 445
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 446 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 478
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 132 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 175
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 176 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 225
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 226 IRANFDEVQSFLLHFWQ 242
>gi|148689463|gb|EDL21410.1| regulatory factor X, 4 (influences HLA class II expression),
isoform CRA_c [Mus musculus]
Length = 808
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 145/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 285 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 329
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 330 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 389
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDAS----L 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD ++ +Q + + L
Sbjct: 390 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLSSITKQTLYTMEDSRDEHRRL 449
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 450 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 509
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 510 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 542
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 196 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKREVTKQTV 239
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +PDFP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 240 AYSPRSK----LG---TLLPDFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 289
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 290 IRANFDEVQSFLLHFWQ 306
>gi|291389952|ref|XP_002711472.1| PREDICTED: regulatory factor X4 [Oryctolagus cuniculus]
Length = 641
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 118 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 162
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 163 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 222
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 223 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 282
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 283 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 342
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 343 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 375
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 27/133 (20%)
Query: 33 YHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSP 92
YHYYGI VK S + Y ++ + + G + SP
Sbjct: 33 YHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTVAYSP 76
Query: 93 QSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLD 151
+S LG +P+FP + DL+ LP E V TF +YR HC+ LD ++ +
Sbjct: 77 RSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTVIRAN 126
Query: 152 FSTIESLWREFWR 164
F ++S FW+
Sbjct: 127 FDEVQSFLLHFWQ 139
>gi|296487428|tpg|DAA29541.1| TPA: regulatory factor X, 4 (influences HLA class II expression)
isoform 1 [Bos taurus]
Length = 744
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 221 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 265
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 266 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 325
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 326 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDTRDEHRKL 385
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 386 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 445
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 446 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 478
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 132 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 175
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 176 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 225
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 226 IRANFDEVQSFLLHFWQ 242
>gi|301784549|ref|XP_002927690.1| PREDICTED: transcription factor RFX4-like [Ailuropoda melanoleuca]
Length = 750
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 227 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 271
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 272 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 331
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 332 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 391
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 392 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 451
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 452 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 484
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 138 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 181
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 182 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 231
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 232 IRANFDEVQSFLLHFWQ 248
>gi|440907715|gb|ELR57825.1| Transcription factor RFX4, partial [Bos grunniens mutus]
Length = 725
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 202 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 246
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 247 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 306
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 307 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDTRDEHRKL 366
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 367 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 426
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 427 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 459
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 113 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 156
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 157 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 206
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 207 IRANFDEVQSFLLHFWQ 223
>gi|73969280|ref|XP_862827.1| PREDICTED: transcription factor RFX4 isoform 3 [Canis lupus
familiaris]
Length = 641
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 118 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 162
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 163 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 222
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 223 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 282
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 283 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 342
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 343 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 375
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 27/133 (20%)
Query: 33 YHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSP 92
YHYYGI VK S + Y ++ + + G + SP
Sbjct: 33 YHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTVAYSP 76
Query: 93 QSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLD 151
+S LG +P+FP + DL+ LP E V TF +YR HC+ LD ++ +
Sbjct: 77 RSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTVIRAN 126
Query: 152 FSTIESLWREFWR 164
F ++S FW+
Sbjct: 127 FDEVQSFLLHFWQ 139
>gi|410965433|ref|XP_003989252.1| PREDICTED: transcription factor RFX4 isoform 3 [Felis catus]
Length = 641
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 118 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 162
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 163 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 222
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 223 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 282
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 283 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 342
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 343 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 375
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 27/133 (20%)
Query: 33 YHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSP 92
YHYYGI VK S + Y ++ + + G + SP
Sbjct: 33 YHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTVAYSP 76
Query: 93 QSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLD 151
+S LG +P+FP + DL+ LP E V TF +YR HC+ LD ++ +
Sbjct: 77 RSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTVIRAN 126
Query: 152 FSTIESLWREFWR 164
F ++S FW+
Sbjct: 127 FDEVQSFLLHFWQ 139
>gi|338721226|ref|XP_003364333.1| PREDICTED: transcription factor RFX4 isoform 2 [Equus caballus]
Length = 640
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 118 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 162
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 163 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 222
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 223 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 282
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 283 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 342
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 343 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 375
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 27/133 (20%)
Query: 33 YHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSP 92
YHYYGI VK S + Y ++ + + G + SP
Sbjct: 33 YHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTVAYSP 76
Query: 93 QSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLD 151
+S LG +P+FP + DL+ LP E V TF +YR HC+ LD ++ +
Sbjct: 77 RSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTVIRAN 126
Query: 152 FSTIESLWREFWR 164
F ++S FW+
Sbjct: 127 FDEVQSFLLHFWQ 139
>gi|354486332|ref|XP_003505335.1| PREDICTED: transcription factor RFX4-like isoform 1 [Cricetulus
griseus]
Length = 642
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 118 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 162
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 163 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 222
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDAS----L 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 223 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRRL 282
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKP--NFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 283 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKKQGSLKKVAQQFLLMWSCFGT 342
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 343 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 375
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 27/133 (20%)
Query: 33 YHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSP 92
YHYYGI VK S + Y ++ + + G + SP
Sbjct: 33 YHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKREVTKQTVAYSP 76
Query: 93 QSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLD 151
+S LG +PDFP + DL+ LP E V TF +YR HC+ LD ++ +
Sbjct: 77 RSK----LG---TLLPDFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTVIRAN 126
Query: 152 FSTIESLWREFWR 164
F ++S FW+
Sbjct: 127 FDEVQSFLLHFWQ 139
>gi|432862245|ref|XP_004069759.1| PREDICTED: transcription factor RFX4-like isoform 2 [Oryzias
latipes]
Length = 736
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 148/273 (54%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + + + V V D
Sbjct: 212 ILDTVIRANFDEVQSFLLHFWQGMPPH---------------MLPVLGSPTVVNIVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKIALHDLPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDAS----L 393
+Q+L+R TSLNHL QA+R V+ ++ QML D VD +++ +Q + + +
Sbjct: 317 SQILKRQTSLNHLCQASRTVINSADITFQMLEDWRNVDLNSITKQTLYTMEDSQEEHRRI 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK-PN-FTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL ++V+ + GK P K A+QFLL WS + +
Sbjct: 377 IIQLYQEFDRLLEEQSPIEAYIEWLDSMVDRCVVKVAGKRPGCLKKVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 437 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 469
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK SP Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKESSPY----------------YDVMYSKKGAAWVNETGKKEVTKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 167 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEERVSTFIMMYRTHCQRILDTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>gi|432862171|ref|XP_004069758.1| PREDICTED: transcription factor RFX4-like isoform 1 [Oryzias
latipes]
Length = 733
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 148/273 (54%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + + + V V D
Sbjct: 212 ILDTVIRANFDEVQSFLLHFWQGMPPH---------------MLPVLGSPTVVNIVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKIALHDLPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDAS----L 393
+Q+L+R TSLNHL QA+R V+ ++ QML D VD +++ +Q + + +
Sbjct: 317 SQILKRQTSLNHLCQASRTVINSADITFQMLEDWRNVDLNSITKQTLYTMEDSQEEHRRI 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK-PN-FTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL ++V+ + GK P K A+QFLL WS + +
Sbjct: 377 IIQLYQEFDRLLEEQSPIEAYIEWLDSMVDRCVVKVAGKRPGCLKKVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 437 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 469
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK SP Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKESSPY----------------YDVMYSKKGAAWVNETGKKEVTKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 167 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEERVSTFIMMYRTHCQRILDTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>gi|67906191|ref|NP_001020089.1| transcription factor RFX4 isoform 1 [Mus musculus]
gi|81912034|sp|Q7TNK1.1|RFX4_MOUSE RecName: Full=Transcription factor RFX4; AltName: Full=Regulatory
factor X 4
gi|33359240|gb|AAQ17042.1| regulatory factor X 4 variant [Mus musculus]
gi|36314596|gb|AAM52485.2| winged-helix transcription factor RFX4 variant 3 [Mus musculus]
gi|41015986|dbj|BAD07408.1| brain-specific regulatory factor X 4 [Mus musculus]
Length = 735
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 145/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 212 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDAS----L 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD ++ +Q + + L
Sbjct: 317 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLSSITKQTLYTMEDSRDEHRRL 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 377 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 437 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 469
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKREVTKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +PDFP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 167 AYSPRSK----LG---TLLPDFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>gi|148689461|gb|EDL21408.1| regulatory factor X, 4 (influences HLA class II expression),
isoform CRA_a [Mus musculus]
Length = 693
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 145/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 212 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDAS----L 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD ++ +Q + + L
Sbjct: 317 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLSSITKQTLYTMEDSRDEHRRL 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 377 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 437 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 469
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKREVTKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +PDFP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 167 AYSPRSK----LG---TLLPDFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>gi|351713400|gb|EHB16319.1| Transcription factor RFX4, partial [Heterocephalus glaber]
Length = 720
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 22/273 (8%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 198 ILDTVIRANFDEVQSFLLHFWQ---------------MPPHMLPVLGSSTVVN-IVGVCD 241
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 242 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHNLPENLRNIKFELSRRF 301
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 302 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSREEHRKL 361
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 362 IIQLYQEFDHLLEEQSPIEAYIEWLDTMVDRCVVKVAAKRQGSLRKVAQQFLLMWSCFGT 421
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 422 RVIRDITLHSAPSFGSFHLIHLMFDDYVLYLLE 454
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 109 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSDTGKKEVSKQTV 152
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP I DL+ LP E V TF +YR HC+ LD +
Sbjct: 153 AYSPRSK----LG---TLLPEFPNIKDLT---LPASLPEEKVSTFIMMYRTHCQRILDTV 202
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 203 IRANFDEVQSFLLHFWQ 219
>gi|348505723|ref|XP_003440410.1| PREDICTED: transcription factor RFX4-like [Oreochromis niloticus]
Length = 736
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 147/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + + + V V D
Sbjct: 212 ILDTVIRANFDEVQSFLLHFWQGMPPH---------------MLPVLGSPTVVNIVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKIALHDLPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDA----SL 393
+Q+L+R TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 317 SQILKRQTSLNHLCQASRTVINSADITFQMLEDWRNVDLNSITKQTLYTMEDSQEEHRQL 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ L +F L++Q+ +E + WL ++V+ + GK + K A+QFLL WS + +
Sbjct: 377 IIHLYQEFDRLLEEQSPIEAYIEWLDSMVDRCVVKVAGKRPGSLKKVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 437 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 469
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKETS----------------QYYDVMYSKKGAAWVNETGKKEVTKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 167 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEERVSTFIMMYRTHCQRILDTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>gi|426225179|ref|XP_004006745.1| PREDICTED: transcription factor RFX4 isoform 2 [Ovis aries]
Length = 641
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 118 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 162
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 163 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 222
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 223 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDTRDEHRKL 282
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 283 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 342
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 343 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 375
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 27/133 (20%)
Query: 33 YHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSP 92
YHYYGI VK S + Y ++ + + G + SP
Sbjct: 33 YHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTVAYSP 76
Query: 93 QSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLD 151
+S LG +P+FP + DL+ LP E V TF +YR HC+ LD ++ +
Sbjct: 77 RSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTVIRAN 126
Query: 152 FSTIESLWREFWR 164
F ++S FW+
Sbjct: 127 FDEVQSFLLHFWQ 139
>gi|74210000|dbj|BAE21294.1| unnamed protein product [Mus musculus]
Length = 592
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 145/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 69 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 113
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 114 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 173
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDAS----L 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD ++ +Q + + L
Sbjct: 174 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLSSITKQTLYTMEDSRDEHRRL 233
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 234 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 293
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 294 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 326
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 107 IPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWR 164
+PDFP + DL+ LP E V TF +YR HC+ LD ++ +F ++S FW+
Sbjct: 35 LPDFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTVIRANFDEVQSFLLHFWQ 90
>gi|300794313|ref|NP_001178111.1| transcription factor RFX4 [Bos taurus]
gi|296487429|tpg|DAA29542.1| TPA: regulatory factor X, 4 (influences HLA class II expression)
isoform 2 [Bos taurus]
Length = 641
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 118 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 162
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 163 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 222
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 223 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDTRDEHRKL 282
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 283 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 342
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 343 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 375
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 64/157 (40%), Gaps = 34/157 (21%)
Query: 9 GIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKT 68
GI+++ PL+ YHYYGI VK S + Y ++ +
Sbjct: 16 GIQIEAQCPLSR-------SITEWYHYYGIAVKESS----------------QYYDVMYS 52
Query: 69 DSNSNQYGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIE 127
+ G + SP+S LG +P+FP + DL+ LP E
Sbjct: 53 KKGAAWVSETGKKEVSKQTVAYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEE 102
Query: 128 DVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWR 164
V TF +YR HC+ LD ++ +F ++S FW+
Sbjct: 103 KVSTFIMMYRTHCQRILDTVIRANFDEVQSFLLHFWQ 139
>gi|190336674|gb|AAI62501.1| Regulatory factor X, 4 [Danio rerio]
Length = 735
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 95/273 (34%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 212 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDAS----L 393
+Q+L+R TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 317 SQILKRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSREDQRRL 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L+ Q+ +E + WL ++V + GK + + A+QFLL WS + +
Sbjct: 377 IIQLYQEFDRLLEDQSPIEAYIEWLDSMVERCVVRVAGKRPGSLKRVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 437 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 469
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVNETGKKEVTKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +PDFP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 167 AYSPRSK----LG---TLLPDFPNVKDLN---LPTSLPEEKVSTFIMMYRTHCQRILDTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>gi|45387831|ref|NP_991275.1| transcription factor RFX4 [Danio rerio]
gi|23428953|gb|AAM52486.1| winged-helix transcription factor RFX4 variant 3 [Danio rerio]
Length = 735
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 95/273 (34%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 212 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDAS----L 393
+Q+L+R TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 317 SQILKRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSREDQRRL 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L+ Q+ +E + WL ++V + GK + + A+QFLL WS + +
Sbjct: 377 IIQLYQEFDRLLEDQSPIEAYIEWLDSMVERCVVRVAGKRPGSLKRVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 437 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 469
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVNETGKKEVTKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +PDFP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 167 AYSPRSK----LG---TLLPDFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>gi|166225158|sp|A2BGA0.1|RFX4_DANRE RecName: Full=Transcription factor RFX4; AltName: Full=Regulatory
factor X 4
Length = 735
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 95/273 (34%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 212 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDAS----L 393
+Q+L+R TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 317 SQILKRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSREDQRRL 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L+ Q+ +E + WL ++V + GK + + A+QFLL WS + +
Sbjct: 377 IIQLYQEFDRLLEDQSPIEAYIEWLDSMVERCVVRVAGKRPGSLKRVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 437 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 469
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVNETGKKEVTKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +PDFP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 167 AYSPRSK----LG---TLLPDFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>gi|67906189|ref|NP_081965.2| transcription factor RFX4 isoform 2 [Mus musculus]
gi|41015988|dbj|BAD07409.1| NYD-sp10 [Mus musculus]
gi|187952983|gb|AAI38720.1| Regulatory factor X, 4 (influences HLA class II expression) [Mus
musculus]
gi|187954033|gb|AAI38721.1| Regulatory factor X, 4 (influences HLA class II expression) [Mus
musculus]
Length = 641
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 145/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 118 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 162
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 163 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 222
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDAS----L 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD ++ +Q + + L
Sbjct: 223 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLSSITKQTLYTMEDSRDEHRRL 282
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 283 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 342
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 343 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 375
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 27/133 (20%)
Query: 33 YHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSP 92
YHYYGI VK S + Y ++ + + G + SP
Sbjct: 33 YHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKREVTKQTVAYSP 76
Query: 93 QSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLD 151
+S LG +PDFP + DL+ LP E V TF +YR HC+ LD ++ +
Sbjct: 77 RSK----LG---TLLPDFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTVIRAN 126
Query: 152 FSTIESLWREFWR 164
F ++S FW+
Sbjct: 127 FDEVQSFLLHFWQ 139
>gi|348551949|ref|XP_003461791.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor RFX4-like
[Cavia porcellus]
Length = 750
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 221 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 265
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 266 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 325
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 326 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSREEHRKL 385
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVN--AVLKPFEGKPNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ V + + K A+QFLL WS + +
Sbjct: 386 IVQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAQTQGALKKVAQQFLLMWSCFGT 445
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 446 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 478
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 132 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSEGGKKEVSKQAV 175
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 176 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 225
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 226 IRANFDEVQSFLLHFWQ 242
>gi|426373977|ref|XP_004053860.1| PREDICTED: transcription factor RFX4 isoform 2 [Gorilla gorilla
gorilla]
Length = 735
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 145/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 212 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVAPPHPPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 317 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 377 ITQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 437 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 469
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 167 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>gi|208965428|dbj|BAG72728.1| regulatory factor X, 4 [synthetic construct]
Length = 705
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 129/214 (60%), Gaps = 6/214 (2%)
Query: 277 DFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGA 336
D + Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK
Sbjct: 226 DSILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRR 285
Query: 337 FAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----AS 392
F+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + +
Sbjct: 286 FSQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRK 345
Query: 393 LVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYS 450
L+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS +
Sbjct: 346 LITQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFG 405
Query: 451 SMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
+ VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 406 TRVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 439
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 27/125 (21%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ L +
Sbjct: 167 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILGSS 216
Query: 148 VTLDF 152
++
Sbjct: 217 TVVNI 221
>gi|426373979|ref|XP_004053861.1| PREDICTED: transcription factor RFX4 isoform 3 [Gorilla gorilla
gorilla]
Length = 744
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 145/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 221 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 265
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A P+ + NIK F
Sbjct: 266 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVAPPHPPENLRNIKFELSRRF 325
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 326 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 385
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 386 ITQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 445
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 446 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 478
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 132 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 175
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 176 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 225
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 226 IRANFDEVQSFLLHFWQ 242
>gi|47219786|emb|CAG03413.1| unnamed protein product [Tetraodon nigroviridis]
Length = 665
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 130/214 (60%), Gaps = 6/214 (2%)
Query: 277 DFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGA 336
D + Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK
Sbjct: 267 DSILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKIALHDLPENLRNIKFELSRR 326
Query: 337 FAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDA----S 392
F+Q+L+R TSLNHL QA+R V+ N+ QML D VD +++ +Q + +
Sbjct: 327 FSQILKRQTSLNHLCQASRTVINNADITFQMLEDWRNVDLNSITKQTLYTMEDSQEEHRQ 386
Query: 393 LVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK-PN-FTKAARQFLLKWSFYS 450
L+ L +F L++Q+ +E + WL ++V+ + GK P K A+QFLL WS +
Sbjct: 387 LIVHLYQEFDRLLEEQSPIEAYIEWLDSMVDRCVVKVAGKRPGCLKKVAQQFLLMWSCFG 446
Query: 451 SMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
+ VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 447 TRVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 480
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 27/125 (21%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 109 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVNETGKKEVTKQTV 152
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 153 AYSPRSK----LG---TLLPEFPNVKDLN---LPTSLPEERVSTFIMMYRTHCQRILDTV 202
Query: 148 VTLDF 152
+ +F
Sbjct: 203 IRANF 207
>gi|21739470|emb|CAD38777.1| hypothetical protein [Homo sapiens]
Length = 480
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 129/214 (60%), Gaps = 6/214 (2%)
Query: 277 DFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGA 336
D + Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK
Sbjct: 1 DSILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRR 60
Query: 337 FAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----AS 392
F+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + +
Sbjct: 61 FSQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRK 120
Query: 393 LVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYS 450
L+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS +
Sbjct: 121 LITQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFG 180
Query: 451 SMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
+ VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 181 TRVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 214
>gi|426373975|ref|XP_004053859.1| PREDICTED: transcription factor RFX4 isoform 1 [Gorilla gorilla
gorilla]
Length = 641
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 145/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 118 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 162
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A P+ + NIK F
Sbjct: 163 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVAPPHPPENLRNIKFELSRRF 222
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 223 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 282
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 283 ITQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 342
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 343 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 375
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 27/133 (20%)
Query: 33 YHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSP 92
YHYYGI VK S + Y ++ + + G + SP
Sbjct: 33 YHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTVAYSP 76
Query: 93 QSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLD 151
+S LG +P+FP + DL+ LP E V TF +YR HC+ LD ++ +
Sbjct: 77 RSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTVIRAN 126
Query: 152 FSTIESLWREFWR 164
F ++S FW+
Sbjct: 127 FDEVQSFLLHFWQ 139
>gi|26329719|dbj|BAC28598.1| unnamed protein product [Mus musculus]
Length = 725
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/273 (34%), Positives = 144/273 (52%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 202 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 246
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 247 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 306
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDAS----L 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD ++ +Q + + L
Sbjct: 307 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLSSITKQTLYTMEDSRDEHRRL 366
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 367 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 426
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFH I L++D+Y+ YL+E
Sbjct: 427 RVIRDMTLHSAPSFGSFHXIHLMFDDYVLYLLE 459
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 113 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKREVTKQTV 156
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +PDFP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 157 AYSPRSK----LG---TLLPDFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 206
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 207 IRANFDEVQSFLLHFWQ 223
>gi|281338613|gb|EFB14197.1| hypothetical protein PANDA_017493 [Ailuropoda melanoleuca]
Length = 721
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 129/214 (60%), Gaps = 6/214 (2%)
Query: 277 DFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGA 336
D + Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK
Sbjct: 242 DSILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRR 301
Query: 337 FAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----AS 392
F+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + +
Sbjct: 302 FSQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRK 361
Query: 393 LVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYS 450
L+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS +
Sbjct: 362 LIIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFG 421
Query: 451 SMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
+ VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 422 TRVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 455
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 109 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 152
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 153 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 202
Query: 148 VTLDFSTIESLWREFWR 164
+ +F + FW+
Sbjct: 203 IRANFDEVGHFLLHFWQ 219
>gi|320162932|gb|EFW39831.1| regulatory factor X [Capsaspora owczarzaki ATCC 30864]
Length = 1185
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 161/342 (47%), Gaps = 76/342 (22%)
Query: 227 FSTIESLWREFWRSQDNNNGDECEEEKYLSKSKL------FCLSKCVPVQ--------AF 272
F I +W FW N G + + + F + +Q F
Sbjct: 629 FELIPLVWHTFWHISANGVGPVGQPSNPAVQQPIQVLNLPFSAFSAIQIQFVSHPAVLEF 688
Query: 273 VRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGC-PQEMINIKV 331
+ R D Y L L+P+++RP+ ++R FAK +E + +A++ C P +++ + V
Sbjct: 689 LERADLAMYDGLTRHLVPELVRPV--ENLQAVRMFAKNIEGSMLDALESCVPPQVVEVLV 746
Query: 332 TAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDA 391
A FA+ LRR T++ +L QA +++Q+ Q+ M + R++F +V +QA WV +CD
Sbjct: 747 RASSTFARTLRRRTAITYLGQAVHSMIQHPEQLQAMNAAIARIEFDSVHDQAGWVTRCDE 806
Query: 392 SLVQQLESDFKLTLQQQNSLEEWANWLKNVVN---------------------------- 423
++V +L F+ L+ + L++ W+++VV+
Sbjct: 807 TVVARLGEQFRQMLRSISRLDDLTLWVESVVDELVISKSPISQQSASSSRPKHGFFGTAL 866
Query: 424 AVLKPFEG----------------------KPNFTKAAR---------QFLLKWSFYSSM 452
AV P G +P+ AA QF+L+WS+YSS+
Sbjct: 867 AVSPPMNGVMGAPLSATSASSSSSMFTSVLQPSPAAAANLAEFSYRACQFILRWSYYSSL 926
Query: 453 VIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGET 494
VIRDLTLRS +FGSFHL+RLL DEY+++L+E +V G T
Sbjct: 927 VIRDLTLRSCPTFGSFHLVRLLVDEYIYFLLETEVHARLGLT 968
>gi|156138745|dbj|BAF75865.1| winged-helix transcription factor RFX4 [Danio rerio]
Length = 735
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 144/273 (52%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
L ++ +F ++S FW+ + L L V V D
Sbjct: 212 ILGTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDAS----L 393
+Q+L+R TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 317 SQILKRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSREDQRRL 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L+ Q+ +E + WL ++V + GK + + A+QFLL WS + +
Sbjct: 377 IIQLYQEFDRLLEDQSPIEAYIEWLDSMVERCVVRVAGKRPGSLKRVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL A SFGSFHLI L++D+Y+ YL+E
Sbjct: 437 RVIRDMTLHGAPSFGSFHLIHLMFDDYVLYLLE 469
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVNETGKKEVTKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +PDFP + DL+ LP E V TF +YR HC+ L +
Sbjct: 167 AYSPRSK----LG---TLLPDFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILGTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>gi|443706948|gb|ELU02782.1| hypothetical protein CAPTEDRAFT_183181 [Capitella teleta]
Length = 495
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 144/273 (52%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F +++ FW+ + E +S V D
Sbjct: 215 ILDTVIRANFDEVQNFLLHFWQGMPQHIVPILGTEVVVS---------------LVGVCD 259
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR F++ ++ WL +M+ P+ + +K+ F
Sbjct: 260 AILYKAISGVLMPTVLQALPESLTQVIRKFSRQLDEWLRASMEDLPRTLQEVKLDLARRF 319
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWV----CQCDASL 393
Q+L+R TSL+HL QA+R VL + QML D VD ++ Q + C D +
Sbjct: 320 VQVLKRQTSLSHLCQASRTVLHSPDVTQQMLQDWRHVDVGSIVRQTLYTMDEFCDRDYHV 379
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKP--NFTKAARQFLLKWSFYSS 451
+ L +F++ LQ Q LE + WL+++V+ + K + ARQF+L WS + +
Sbjct: 380 IVTLHREFEVLLQDQAPLESYTVWLESMVDRCIVRVTMKKACSLRHLARQFMLMWSCFGT 439
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHL+ L++D+Y+ +L+E
Sbjct: 440 RVIRDMTLHSAPSFGSFHLLHLMFDDYVMFLVE 472
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 24/136 (17%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK SP ++ S + G + K Q
Sbjct: 125 GQSKYHYYGIGVKETSPYYDVTFSRKATQSFGGEVK---------------KECVKQPMV 169
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIV 148
+ P+S L P+FP + E LP + + E+V TF +YR HC+ LD ++
Sbjct: 170 SYPPRSKVGTLL-------PEFPSVKDLE--LPSNVSEENVCTFLVMYRTHCQRILDTVI 220
Query: 149 TLDFSTIESLWREFWR 164
+F +++ FW+
Sbjct: 221 RANFDEVQNFLLHFWQ 236
>gi|405964648|gb|EKC30109.1| DNA-binding protein RFX6 [Crassostrea gigas]
Length = 856
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 150/277 (54%), Gaps = 23/277 (8%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I++ FW+ + E E + + C+ D
Sbjct: 294 ILDTAINANFEEIQNFLLHFWQGLPEHLLPLVENEVIID---IICV------------CD 338
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L EVLIP ++ +P +L IRNF+K E+W++ +++ P + K+ F
Sbjct: 339 SILYKVLTEVLIPATMQEMPETLLCDIRNFSKHWENWVSTSLENLPDTLSQSKLPVARRF 398
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC----QCDASL 393
AQ ++R TS HLAQ AR VL ++ +NQM+ D++ +D +++ A + D L
Sbjct: 399 AQSMKRQTSFLHLAQTARPVLYDAQMVNQMIADVDSIDLNSIGTHALHNTNDGGESDLEL 458
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNA-VLKPFE--GKPNFTKAARQFLLKWSFYS 450
+ +FK L++Q ++E + WL +VV V+KP + G+ +F K A FLL WSF+
Sbjct: 459 NAEFLREFKEILRKQATVEAFTEWLDSVVETKVIKPSKQNGR-SFKKRASAFLLNWSFFG 517
Query: 451 SMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQV 487
+ V+ +LTL +A +FGSFHLIR+L DEY+ +E Q+
Sbjct: 518 ARVMHNLTLNNAKAFGSFHLIRMLLDEYVLLAVETQL 554
>gi|115629228|ref|XP_790469.2| PREDICTED: DNA-binding protein RFX6-like [Strongylocentrotus
purpuratus]
Length = 942
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 147/273 (53%), Gaps = 20/273 (7%)
Query: 219 LDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDF 278
LD I+ F I++ FW+ ++ + + L C+ D
Sbjct: 252 LDTIINSSFDEIQNFLLHFWQGMPDHLLPLLDNPIMID---LICI------------CDS 296
Query: 279 LFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFA 338
+ Y+ ++++LIP ++ +P SL + IR F + E WLT++++ P + K+T F
Sbjct: 297 ILYKTVIDILIPATMQEMPESLLTDIRRFTRQWELWLTSSLENLPDTLKESKMTVARRFV 356
Query: 339 QMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC---QCDASLVQ 395
Q L+R +S HLAQ AR VL + ++QM+ DL +VD ++ A + D+ L
Sbjct: 357 QSLKRQSSFLHLAQTARPVLFDQQLVDQMIEDLEKVDLCSIGSHAMLSVSQDETDSELNT 416
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNA-VLKPF-EGKPNFTKAARQFLLKWSFYSSMV 453
+ +DFK L++Q ++E + WL VV + V+KP + +F K A+ FLLKWSF+ + V
Sbjct: 417 EFLNDFKELLKKQATVEAFTEWLDQVVESKVIKPSKQNGRSFKKRAQDFLLKWSFFGARV 476
Query: 454 IRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
+ LT+ +A SF SFHLIR+L DEY+ +E Q
Sbjct: 477 MHSLTINNAQSFASFHLIRMLLDEYILLAVESQ 509
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 105/276 (38%), Gaps = 60/276 (21%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G+SKYHYYGI +K S + S + G R +L + +Y T
Sbjct: 162 GHSKYHYYGIGIKESSAYYHTVYSTK-GLTRFSGARLKSEGGFTRKYSLSSKT------- 213
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIV 148
+P+FP D + LP + E VDT +Y+ H + LD I+
Sbjct: 214 ---------------GTLLPEFP--DAQQMALPFVLSAERVDTLLVMYKTHSQCVLDTII 256
Query: 149 TLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQN 208
F I++ FW+ ++ + + L C+ D + Y+
Sbjct: 257 NSSFDEIQNFLLHFWQGMPDHLLPLLDNPIMID---LICI------------CDSILYKT 301
Query: 209 LVEVLIPDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKC 266
++++LIP + +L D W E W + N + +E ++ ++ F
Sbjct: 302 VIDILIPATMQEMPESLLTDIRRFTRQW-ELWLTSSLENLPDTLKESKMTVARRF----- 355
Query: 267 VPVQAFVRRVDF----------LFYQNLVEVLIPDV 292
VQ+ R+ F LF Q LV+ +I D+
Sbjct: 356 --VQSLKRQSSFLHLAQTARPVLFDQQLVDQMIEDL 389
>gi|405970221|gb|EKC35149.1| Transcription factor RFX4 [Crassostrea gigas]
Length = 643
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 145/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + + S++ + + C D
Sbjct: 225 ILDTVIRANFDEVQSFLLHFWQGMPEHMMAILD-----SQTTVLLVGVC----------D 269
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SL I+NF++ ++ WL A+ P + +K F
Sbjct: 270 TMLYKAIANVLMPSVLQALPDSLIQVIKNFSQQLDEWLKVALDSLPSGIREVKFDLARRF 329
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQ- 396
+Q+LRR SLNHL QAAR+V+ N QML D VD + +Q + + V +
Sbjct: 330 SQILRRQISLNHLCQAARSVVHNPDISAQMLEDWISVDLSGIIKQTMYTMERYREKVMET 389
Query: 397 ---LESDFKLTLQQQNSLEEWANWLKNVVNAVLKPF-EGKP-NFTKAARQFLLKWSFYSS 451
L ++F+ L Q L+ + WL +V+ + F + +P + + ARQFLL WS + +
Sbjct: 390 IVNLCNEFEQLLDDQAPLQSYTEWLDRMVDRCVVQFAKNRPGSLRRTARQFLLMWSCFCT 449
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
+IRD+TL S+ SFGSFHL+ L++D+Y+ +L+E
Sbjct: 450 RIIRDMTLHSSPSFGSFHLLHLMFDDYVLFLVE 482
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 26/136 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI V+ S KY + +EG +
Sbjct: 137 GQSKYHYYGIGVRETS-----------------KYFETVYSAKGTPSSNEGKKETVKQIV 179
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIV 148
SP+S LG +PDFP D+ + LP+D + V TF +YR HC+ LD ++
Sbjct: 180 AYSPRSK----LG---TLLPDFP--DIKDIKLPDDVPEDKVLTFMMMYRTHCQRILDTVI 230
Query: 149 TLDFSTIESLWREFWR 164
+F ++S FW+
Sbjct: 231 RANFDEVQSFLLHFWQ 246
>gi|167537360|ref|XP_001750349.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771177|gb|EDQ84848.1| predicted protein [Monosiga brevicollis MX1]
Length = 788
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 97/270 (35%), Positives = 147/270 (54%), Gaps = 26/270 (9%)
Query: 219 LDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDF 278
L ++ DF I+ W +FW G K + L+ VQ V + D
Sbjct: 446 LQTVIAGDFQAIQEQWNQFW-------GTIAVHFKTI-------LASPAGVQN-VLQADD 490
Query: 279 LFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFA 338
+F Q L + +I DVL+P+P L +R FAK ++ WL AM G ++++ ++ A
Sbjct: 491 IFIQALQQAIIRDVLKPLPEELLKELRFFAKCIDVWLRTAMDGLNLKLVDARLEKYHTLA 550
Query: 339 QMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLE 398
LRR+TSLNHLA A A+ +S Q+ QML DL+ +D + Q + C+C + V +
Sbjct: 551 LRLRRFTSLNHLAGAVSAIFDSSDQMYQMLQDLSSLDVLALHSQLAMTCECQEATVSLIV 610
Query: 399 SDFKLTLQQQNSLEEWA----NWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVI 454
S+ L+ + SL+ WA + L++ V + P T +QF+L+W F+S +VI
Sbjct: 611 SEVLSLLENEESLQVWAALVQHKLRDFVAGAVHP-------TARGKQFMLRWGFFSGLVI 663
Query: 455 RDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
RDLTLRSA SFGSF+L+RLL DE + +L+E
Sbjct: 664 RDLTLRSALSFGSFNLLRLLMDELLIWLVE 693
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 60/154 (38%), Gaps = 27/154 (17%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYK-----------LVKTDSNSNQYGS 77
GNSKYHYYGIR+K + L+ P + +K K T S+ S
Sbjct: 320 GNSKYHYYGIRLKESTKLDFDPTQIGGAHTKTRKTKDESNSNTGTPAPTTTKRKSSTRAS 379
Query: 78 EGHTTAGQTNSNPSPQSGNH-------NFLGDGSN-AIPDFPEIDLSEDCLPEDCTIEDV 129
+ AG ++ +P S + F G + +P FP + I+
Sbjct: 380 KARDAAGPSSKAEAPSSPRNAEASSPGKFAGVFARVTLPPFPSLQAQG--------IDGA 431
Query: 130 DTFRSIYREHCEAFLDAIVTLDFSTIESLWREFW 163
+ F Y HC L ++ DF I+ W +FW
Sbjct: 432 NDFSKPYHAHCAKVLQTVIAGDFQAIQEQWNQFW 465
>gi|380807343|gb|AFE75547.1| MHC class II regulatory factor RFX1, partial [Macaca mulatta]
Length = 134
Score = 150 bits (380), Expect = 1e-33, Method: Composition-based stats.
Identities = 73/101 (72%), Positives = 83/101 (82%), Gaps = 2/101 (1%)
Query: 415 ANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLL 474
A WL VV+ VLKP++G F KAA+ FLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLL
Sbjct: 1 AAWLDGVVSQVLKPYQGSAGFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLL 60
Query: 475 YDEYMFYLIEHQVALATGETPIAVIGSKESNPVESSQNPMD 515
YDEYM+YLIEH+VA A GETPIAV+G E + +S NP+D
Sbjct: 61 YDEYMYYLIEHRVAQAKGETPIAVMG--EFANLATSLNPLD 99
>gi|405971039|gb|EKC35896.1| DNA-binding protein RFX6 [Crassostrea gigas]
Length = 804
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 150/282 (53%), Gaps = 21/282 (7%)
Query: 219 LDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDF 278
LD +++ +F +++ FW+ + L L V V D
Sbjct: 237 LDTVISANFEEVQNFLLHFWQGMPEH---------------LTNLLSLDMVADIVGLCDS 281
Query: 279 LFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFA 338
+ Y+ +V+VLIP ++ +P SL S I+ F + + WLT++++ P ++ + K+ F
Sbjct: 282 ILYKVVVDVLIPSTIQDLPDSLGSEIKLFIRRLTHWLTSSLEDVPNKLRDKKIEVAKHFT 341
Query: 339 QMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLE 398
++R S HLAQ AR+VL N +N M+ D++ +D + QA + + + ++
Sbjct: 342 HSIKRQMSFVHLAQTARSVLHNQESLNGMIEDVSNIDLTEICCQAGFTTPKSTNSLTEII 401
Query: 399 SD----FKLTLQQQNSLEEWANWLKNVVN-AVLKPFEGK-PNFTKAARQFLLKWSFYSSM 452
+D F+ L +Q +E + WL N+++ VL+P + +F + A +F+L W S+
Sbjct: 402 NDCFDEFQNLLTKQAPIEGYTEWLDNIIDKCVLQPLKDHDKSFKETASKFILHWEIIGSL 461
Query: 453 VIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGET 494
+RDLTL +A+SFG+FHLI +++DEY+F ++E Q T +T
Sbjct: 462 FMRDLTLHNASSFGAFHLIHMMFDEYVFLVMETQHDQVTDKT 503
>gi|443690128|gb|ELT92343.1| hypothetical protein CAPTEDRAFT_220726 [Capitella teleta]
Length = 816
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 147/273 (53%), Gaps = 22/273 (8%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F IE+ FW+ L + L L+ + +
Sbjct: 269 ILDTAINANFKEIETYLLHFWQG--------------LPEHLLSMLTSELTIDIICICDS 314
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
L ++ L++VLIP ++ +P +L +FA+ E W+T++++G PQ++ K F
Sbjct: 315 IL-HKTLIDVLIPSTMQEMPENLLRDTLHFAQYWERWVTSSLEGLPQKLSEKKTAVARRF 373
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQL 397
+Q L+R +S HLAQ AR VL ++ +NQM++DL+++D H + A +C + L
Sbjct: 374 SQSLKRQSSFLHLAQTARPVLFDAQLVNQMISDLDKIDLHTIGSHA--MCGSPEDGPENL 431
Query: 398 ESDFKLTLQQQNSLEEWANWL-KNVVNAVLKPFE--GKPNFTKAARQFLLKWSFYSSMVI 454
+FK L++Q ++E + WL NV ++KP + GK N + + FLLKWSF+ + +
Sbjct: 432 R-EFKELLRKQATIEAFIEWLDANVEQKIIKPSKQNGK-NIQRRGQDFLLKWSFFGARIS 489
Query: 455 RDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQV 487
+LTL +A SF S HLIRLL DEYM IE Q+
Sbjct: 490 HNLTLNNAKSFASIHLIRLLLDEYMLLAIESQL 522
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 107 IPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWR 164
+PDFP + +P++ T E ++TF +YR HC+ LD + +F IE+ FW+
Sbjct: 235 LPDFPRA--AYLIVPDNQTREKMETFLMMYRTHCQCILDTAINANFKEIETYLLHFWQ 290
>gi|313245084|emb|CBY42520.1| unnamed protein product [Oikopleura dioica]
Length = 231
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 102/164 (62%), Gaps = 1/164 (0%)
Query: 324 QEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA 383
Q++I KV+AV F+ LRR TSL HL + AR +L N + Q DL ++D + EQ
Sbjct: 11 QDIIEAKVSAVSHFSSTLRRLTSLTHLIREARPILNNQEIVQQKRADLEKIDIMKIHEQI 70
Query: 384 SWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFL 443
SWV +C VQ + S L S ++W +L +N+ L P PN+T A++F+
Sbjct: 71 SWVTECPLETVQTIHSGMVGLLDTHASFDDWHVFLVKSINSCL-PERSHPNYTVKAKKFI 129
Query: 444 LKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQV 487
+ WS+YSSMVIRDLTLRS +FGSFHLIR+L DE + ++IE ++
Sbjct: 130 MSWSYYSSMVIRDLTLRSVQTFGSFHLIRMLLDELVSHVIEQKI 173
>gi|260823480|ref|XP_002604211.1| hypothetical protein BRAFLDRAFT_73450 [Branchiostoma floridae]
gi|229289536|gb|EEN60222.1| hypothetical protein BRAFLDRAFT_73450 [Branchiostoma floridae]
Length = 596
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 146/299 (48%), Gaps = 46/299 (15%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I++ FW+ + + L L V V D
Sbjct: 10 ILDTAINANFEEIQNFLLHFWQG--------------MPEHLLPLLDNPVIVDVICAS-D 54
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P +L + IRNFAK E W +A++ P M K+ F
Sbjct: 55 QILYKVLTDVLIPATMQEMPENLLADIRNFAKHWEHWTASALENLPDSMAERKLPVARRF 114
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDA------ 391
AQ L+R S HLAQ +R VL + ++QM+ D++ VD ++ QA + D
Sbjct: 115 AQSLKRQVSFLHLAQTSRPVLFDQQLVDQMIDDISEVDLTSIGSQALYTSTADGDQDADN 174
Query: 392 ---------------------SLVQQLESDFKLTLQQQNSLEEWANWLKNVV-NAVLKPF 429
S + + DFK L++Q ++E + W+ +V V+KP
Sbjct: 175 AECEDTFINIVFCTHVIMTSLSTISNVLRDFKELLKKQATVEAFTEWIDQIVEQKVIKPS 234
Query: 430 E--GKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
+ G+ + K A++FLLKWSF+ + V+ +LTL +A FGSFHLIR+L DEY+ +E Q
Sbjct: 235 KQNGR-SMKKRAQEFLLKWSFFGARVMHNLTLNNARCFGSFHLIRMLLDEYLLLAVETQ 292
>gi|320461684|ref|NP_001189351.1| regulatory factor X, 6 [Xenopus laevis]
gi|318069010|gb|ADV37424.1| Rfx6 [Xenopus laevis]
Length = 926
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 128/218 (58%), Gaps = 10/218 (4%)
Query: 277 DFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGA 336
D + Y+ L EVLIP ++ +P SL + IRNFAK E W+ ++++ P+ + K+
Sbjct: 319 DSILYKVLTEVLIPSTMQEMPESLLADIRNFAKHWEQWVISSLENLPESLSEKKLPIARR 378
Query: 337 FAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC-----DA 391
F L+R TS HLAQ AR L + +N M +D+ + D +++ QA + C D
Sbjct: 379 FVSSLKRQTSFLHLAQIARPALFDQNVVNSMTSDIEKADLYSIGSQA-LLSSCSGADSDC 437
Query: 392 SLVQQLESDFKLTLQQQNSLEEWANWLKNVV-NAVLKPFE--GKPNFTKAARQFLLKWSF 448
+ +L + + L++ ++E + WL NVV V+K + GK + K A+ FLLKWSF
Sbjct: 438 DVYTELFQELRDLLKKNATVESFIEWLDNVVEQKVIKASKQNGK-SLKKRAQDFLLKWSF 496
Query: 449 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 497 FGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAVETQ 534
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 98/276 (35%), Gaps = 60/276 (21%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G+SKYHYYGI +K S + S + G R KL + +Y T
Sbjct: 186 GHSKYHYYGIGIKESSAYYHSVYSGK-GLTRFSGSKLKSEGGFTRKYSLSSKT------- 237
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIV 148
+P+FP L + E VDT +Y+ HC+ LD +
Sbjct: 238 ---------------GTLLPEFPSAQ--HLVLQGGISKEKVDTLIMMYKTHCQCVLDNAI 280
Query: 149 TLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQN 208
+F I+ FW+ ++ + + +FC+ D + Y+
Sbjct: 281 NGNFEEIQHFLLHFWQGMPDHLLPLLDNPII---TDIFCV------------CDSILYKV 325
Query: 209 LVEVLIPDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKC 266
L EVLIP + +L D W E W N E EK L ++ F
Sbjct: 326 LTEVLIPSTMQEMPESLLADIRNFAKHW-EQWVISSLENLPESLSEKKLPIARRF----- 379
Query: 267 VPVQAFVRRVDF----------LFYQNLVEVLIPDV 292
V + R+ F LF QN+V + D+
Sbjct: 380 --VSSLKRQTSFLHLAQIARPALFDQNVVNSMTSDI 413
>gi|403295495|ref|XP_003938677.1| PREDICTED: DNA-binding protein RFX6 [Saimiri boliviensis
boliviensis]
Length = 927
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 146/280 (52%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 274 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 318
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + + K+ V F
Sbjct: 319 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRF 378
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ RVD +++ QA S ++ +
Sbjct: 379 VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIERVDLNSIGSQALLTISGSTDTESGI 438
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 439 YTEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDFLLKW 498
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 499 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 538
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 102/280 (36%), Gaps = 64/280 (22%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G+SKYHYYGI +K S + S + G R KL + +Y T
Sbjct: 185 GHSKYHYYGIGIKESSAYYHSVYSGK-GLTRFSGSKLKNEGGFTRKYSLSSKT------- 236
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEID--LSEDCLPEDCTIEDVDTFRSIYREHCEAFLDA 146
+P+FP + + C+ +D VDT +Y+ HC+ LD
Sbjct: 237 ---------------GTLLPEFPSAQHLVYQGCISKD----KVDTLIMMYKTHCQCILDN 277
Query: 147 IVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFY 206
+ +F I+ FW+ ++ E + +FC+ D + Y
Sbjct: 278 AINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CDSILY 322
Query: 207 QNLVEVLIPDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLS 264
+ L +VLIP + +L D W E W N E +K + + F
Sbjct: 323 KVLTDVLIPATMQEMPESLLADIRNFAKNW-EQWVVSSLENLPEALTDKKIPIVRRF--- 378
Query: 265 KCVPVQAFVRRVDF----------LFYQNLVEVLIPDVLR 294
V + R+ F LF Q++V ++ D+ R
Sbjct: 379 ----VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIER 414
>gi|332213115|ref|XP_003255664.1| PREDICTED: DNA-binding protein RFX6 [Nomascus leucogenys]
Length = 928
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 146/280 (52%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 275 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 319
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + + K+ V F
Sbjct: 320 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRF 379
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ RVD +++ QA S ++ +
Sbjct: 380 VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIERVDLNSIGSQALLTISGSTDTESGI 439
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 440 YTEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDFLLKW 499
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 500 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 539
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 102/280 (36%), Gaps = 64/280 (22%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G+SKYHYYGI +K S + S + G R KL + +Y T
Sbjct: 186 GHSKYHYYGIGIKESSAYYHSVYSGK-GLTRFSGSKLKNEGGFTRKYSLSSKT------- 237
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEID--LSEDCLPEDCTIEDVDTFRSIYREHCEAFLDA 146
+P+FP + + C+ +D VDT +Y+ HC+ LD
Sbjct: 238 ---------------GTLLPEFPSAQHLVYQGCISKD----KVDTLIMMYKTHCQCILDN 278
Query: 147 IVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFY 206
+ +F I+ FW+ ++ E + +FC+ D + Y
Sbjct: 279 AINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CDSILY 323
Query: 207 QNLVEVLIPDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLS 264
+ L +VLIP + +L D W E W N E +K + + F
Sbjct: 324 KVLTDVLIPATMQEMPESLLADIRNFAKNW-EQWVVSSLENLPEALTDKKIPIVRRF--- 379
Query: 265 KCVPVQAFVRRVDF----------LFYQNLVEVLIPDVLR 294
V + R+ F LF Q++V ++ D+ R
Sbjct: 380 ----VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIER 415
>gi|109072898|ref|XP_001110999.1| PREDICTED: DNA-binding protein RFX6-like [Macaca mulatta]
Length = 928
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 146/280 (52%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 275 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 319
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + + K+ V F
Sbjct: 320 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRF 379
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ RVD +++ QA S ++ +
Sbjct: 380 VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIERVDLNSIASQALLTISGSTDTESGI 439
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 440 YTEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDFLLKW 499
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 500 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 539
>gi|397514732|ref|XP_003827628.1| PREDICTED: DNA-binding protein RFX6 [Pan paniscus]
Length = 928
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 146/280 (52%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 275 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 319
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + + K+ V F
Sbjct: 320 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRF 379
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ RVD +++ QA S ++ +
Sbjct: 380 VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIERVDLNSIGSQALLTISGSTDTESGI 439
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 440 YTEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDFLLKW 499
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 500 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 539
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 102/280 (36%), Gaps = 64/280 (22%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G+SKYHYYGI +K S + S + G R KL + +Y T
Sbjct: 186 GHSKYHYYGIGIKESSAYYHSVYSGK-GLTRFSGSKLKNEGGFTRKYSLSSKT------- 237
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEID--LSEDCLPEDCTIEDVDTFRSIYREHCEAFLDA 146
+P+FP + + C+ +D VDT +Y+ HC+ LD
Sbjct: 238 ---------------GTLLPEFPSAQHLVYQGCISKD----KVDTLIMMYKTHCQCILDN 278
Query: 147 IVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFY 206
+ +F I+ FW+ ++ E + +FC+ D + Y
Sbjct: 279 AINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CDSILY 323
Query: 207 QNLVEVLIPDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLS 264
+ L +VLIP + +L D W E W N E +K + + F
Sbjct: 324 KVLTDVLIPATMQEMPESLLADIRNFAKNW-EQWVVSSLENLPEALTDKKIPIVRRF--- 379
Query: 265 KCVPVQAFVRRVDF----------LFYQNLVEVLIPDVLR 294
V + R+ F LF Q++V ++ D+ R
Sbjct: 380 ----VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIER 415
>gi|296199095|ref|XP_002746945.1| PREDICTED: DNA-binding protein RFX6 [Callithrix jacchus]
Length = 928
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 146/280 (52%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 275 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 319
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + + K+ V F
Sbjct: 320 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRF 379
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ RVD +++ QA S ++ +
Sbjct: 380 VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIERVDLNSIGSQALLTISGSTDTESGI 439
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 440 YTEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDFLLKW 499
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 500 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 539
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 102/280 (36%), Gaps = 64/280 (22%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G+SKYHYYGI +K S + S + G R KL + +Y T
Sbjct: 186 GHSKYHYYGIGIKESSAYYHSVYSGK-GLTRFSGSKLKNEGGFTRKYSLSSKT------- 237
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEID--LSEDCLPEDCTIEDVDTFRSIYREHCEAFLDA 146
+P+FP + + C+ +D VDT +Y+ HC+ LD
Sbjct: 238 ---------------GTLLPEFPSAQHLVYQGCISKD----KVDTLIMMYKTHCQCILDN 278
Query: 147 IVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFY 206
+ +F I+ FW+ ++ E + +FC+ D + Y
Sbjct: 279 AINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CDSILY 323
Query: 207 QNLVEVLIPDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLS 264
+ L +VLIP + +L D W E W N E +K + + F
Sbjct: 324 KVLTDVLIPATMQEMPESLLADIRNFAKNW-EQWVVSSLENLPEALTDKKIPIVRRF--- 379
Query: 265 KCVPVQAFVRRVDF----------LFYQNLVEVLIPDVLR 294
V + R+ F LF Q++V ++ D+ R
Sbjct: 380 ----VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIER 415
>gi|114609051|ref|XP_527584.2| PREDICTED: DNA-binding protein RFX6 [Pan troglodytes]
Length = 928
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 146/280 (52%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 275 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 319
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + + K+ V F
Sbjct: 320 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRF 379
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ RVD +++ QA S ++ +
Sbjct: 380 VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIERVDLNSIGSQALLTISGSTDTESGI 439
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 440 YTEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDFLLKW 499
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 500 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 539
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 102/280 (36%), Gaps = 64/280 (22%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G+SKYHYYGI +K S + S + G R KL + +Y T
Sbjct: 186 GHSKYHYYGIGIKESSAYYHSVYSGK-GLTRFSGSKLKNEGGFTRKYSLSSKT------- 237
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEID--LSEDCLPEDCTIEDVDTFRSIYREHCEAFLDA 146
+P+FP + + C+ +D VDT +Y+ HC+ LD
Sbjct: 238 ---------------GTLLPEFPSAQHLVYQGCISKD----KVDTLIMMYKTHCQCILDN 278
Query: 147 IVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFY 206
+ +F I+ FW+ ++ E + +FC+ D + Y
Sbjct: 279 AINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CDSILY 323
Query: 207 QNLVEVLIPDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLS 264
+ L +VLIP + +L D W E W N E +K + + F
Sbjct: 324 KVLTDVLIPATMQEMPESLLADIRNFAKNW-EQWVVSSLENLPEALTDKKIPIVRRF--- 379
Query: 265 KCVPVQAFVRRVDF----------LFYQNLVEVLIPDVLR 294
V + R+ F LF Q++V ++ D+ R
Sbjct: 380 ----VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIER 415
>gi|258547126|ref|NP_775831.2| DNA-binding protein RFX6 [Homo sapiens]
gi|166225159|sp|Q8HWS3.2|RFX6_HUMAN RecName: Full=DNA-binding protein RFX6; AltName: Full=Regulatory
factor X 6; AltName: Full=Regulatory factor X
domain-containing protein 1
gi|119568598|gb|EAW48213.1| regulatory factor X domain containing 1, isoform CRA_b [Homo
sapiens]
Length = 928
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 146/280 (52%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 275 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 319
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + + K+ V F
Sbjct: 320 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRF 379
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ RVD +++ QA S ++ +
Sbjct: 380 VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIERVDLNSIGSQALLTISGSTDTESGI 439
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 440 YTEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDFLLKW 499
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 500 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 539
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 102/280 (36%), Gaps = 64/280 (22%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G+SKYHYYGI +K S + S + G R KL + +Y T
Sbjct: 186 GHSKYHYYGIGIKESSAYYHSVYSGK-GLTRFSGSKLKNEGGFTRKYSLSSKT------- 237
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEID--LSEDCLPEDCTIEDVDTFRSIYREHCEAFLDA 146
+P+FP + + C+ +D VDT +Y+ HC+ LD
Sbjct: 238 ---------------GTLLPEFPSAQHLVYQGCISKD----KVDTLIMMYKTHCQCILDN 278
Query: 147 IVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFY 206
+ +F I+ FW+ ++ E + +FC+ D + Y
Sbjct: 279 AINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CDSILY 323
Query: 207 QNLVEVLIPDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLS 264
+ L +VLIP + +L D W E W N E +K + + F
Sbjct: 324 KVLTDVLIPATMQEMPESLLADIRNFAKNW-EQWVVSSLENLPEALTDKKIPIVRRF--- 379
Query: 265 KCVPVQAFVRRVDF----------LFYQNLVEVLIPDVLR 294
V + R+ F LF Q++V ++ D+ R
Sbjct: 380 ----VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIER 415
>gi|297678985|ref|XP_002817326.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein RFX6 [Pongo
abelii]
Length = 936
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 146/280 (52%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 283 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 327
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + + K+ V F
Sbjct: 328 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRF 387
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ RVD +++ QA S ++ +
Sbjct: 388 VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIERVDLNSIGSQALLTISGSTDTESGI 447
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 448 YTEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDFLLKW 507
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 508 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 547
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 104/281 (37%), Gaps = 58/281 (20%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQY-GSEGHTTAGQTN 87
G+SKYHYYGI +K S Y V + ++ GS+ Q +
Sbjct: 186 GHSKYHYYGIGIKESS----------------AYYHSVYSGKGLTRFSGSKLKNEVCQRS 229
Query: 88 SNPSPQSGNHNFLGDGSNAIPDFPEID--LSEDCLPEDCTIEDVDTFRSIYREHCEAFLD 145
+ ++ +P+FP + + C+ +D VDT +Y+ HC+ LD
Sbjct: 230 XXXXAFTRKYSLSSKTGTLLPEFPSAQHLVYQGCISKD----KVDTLIMMYKTHCQCILD 285
Query: 146 AIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLF 205
+ +F I+ FW+ ++ E + +FC+ D +
Sbjct: 286 NAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CDSIL 330
Query: 206 YQNLVEVLIPDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCL 263
Y+ L +VLIP + +L D W + W N E +K + + F
Sbjct: 331 YKVLTDVLIPATMQEMPESLLADIRNFAKNWEQ-WVVSSLENLPEALTDKKIPIVRRF-- 387
Query: 264 SKCVPVQAFVRRVDF----------LFYQNLVEVLIPDVLR 294
V + R+ F LF Q++V ++ D+ R
Sbjct: 388 -----VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIER 423
>gi|395816350|ref|XP_003781667.1| PREDICTED: DNA-binding protein RFX6 [Otolemur garnettii]
Length = 925
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 146/280 (52%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 275 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVIID---IFCV------------CD 319
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + + K+ V F
Sbjct: 320 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRF 379
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ RVD +++ QA S ++ +
Sbjct: 380 VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIERVDLNSIGSQALLTISGSTDTESDI 439
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 440 YTEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDFLLKW 499
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 500 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 539
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 102/280 (36%), Gaps = 64/280 (22%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G+SKYHYYGI +K S + S + G R KL + +Y T
Sbjct: 186 GHSKYHYYGIGIKESSAYYHSVYSGK-GLTRFSGSKLKNEGGFTRKYSLSSKT------- 237
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEID--LSEDCLPEDCTIEDVDTFRSIYREHCEAFLDA 146
+P+FP + + C+ +D VDT +Y+ HC+ LD
Sbjct: 238 ---------------GTLLPEFPSAQHLVYQGCISKD----KVDTLIMMYKTHCQCILDN 278
Query: 147 IVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFY 206
+ +F I+ FW+ ++ E + +FC+ D + Y
Sbjct: 279 AINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CDSILY 323
Query: 207 QNLVEVLIPDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLS 264
+ L +VLIP + +L D W E W N E +K + + F
Sbjct: 324 KVLTDVLIPATMQEMPESLLADIRNFAKNW-EQWVVSSLENLPEALTDKKIPIVRRF--- 379
Query: 265 KCVPVQAFVRRVDF----------LFYQNLVEVLIPDVLR 294
V + R+ F LF Q++V ++ D+ R
Sbjct: 380 ----VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIER 415
>gi|402868449|ref|XP_003898315.1| PREDICTED: DNA-binding protein RFX6 [Papio anubis]
Length = 928
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 146/280 (52%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 275 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 319
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + + K+ V F
Sbjct: 320 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRF 379
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ RVD +++ QA S ++ +
Sbjct: 380 VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIERVDLNSIGSQALLTISGSTDTESGI 439
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 440 YTEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDFLLKW 499
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 500 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 539
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 102/280 (36%), Gaps = 64/280 (22%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G+SKYHYYGI +K S + S + G R KL + +Y T
Sbjct: 186 GHSKYHYYGIGIKESSAYYHSVYSGK-GLTRFSGSKLKNEGGFTRKYSLSSKT------- 237
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEID--LSEDCLPEDCTIEDVDTFRSIYREHCEAFLDA 146
+P+FP + + C+ +D VDT +Y+ HC+ LD
Sbjct: 238 ---------------GTLLPEFPSAQHLVYQGCISKD----KVDTLIMMYKTHCQCILDN 278
Query: 147 IVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFY 206
+ +F I+ FW+ ++ E + +FC+ D + Y
Sbjct: 279 AINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CDSILY 323
Query: 207 QNLVEVLIPDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLS 264
+ L +VLIP + +L D W E W N E +K + + F
Sbjct: 324 KVLTDVLIPATMQEMPESLLADIRNFAKNW-EQWVVSSLENLPEALTDKKIPIVRRF--- 379
Query: 265 KCVPVQAFVRRVDF----------LFYQNLVEVLIPDVLR 294
V + R+ F LF Q++V ++ D+ R
Sbjct: 380 ----VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIER 415
>gi|24660190|gb|AAH39248.1| Regulatory factor X, 6 [Homo sapiens]
Length = 928
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 146/280 (52%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 275 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 319
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + + K+ V F
Sbjct: 320 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRF 379
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ RVD +++ QA S ++ +
Sbjct: 380 VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIERVDLNSIGSQALLTISGSTDTESGI 439
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 440 YTEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDFLLKW 499
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 500 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 539
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 102/280 (36%), Gaps = 64/280 (22%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G+SKYHYYGI +K S + S + G R KL + +Y T
Sbjct: 186 GHSKYHYYGIGIKESSAYYHSVYSGK-GLTRFSGSKLKNEGGFTRKYSLSSKT------- 237
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEID--LSEDCLPEDCTIEDVDTFRSIYREHCEAFLDA 146
+P+FP + + C+ +D VDT +Y+ HC+ LD
Sbjct: 238 ---------------GTLLPEFPSAQHLVYQGCISKD----KVDTLIMMYKTHCQCILDN 278
Query: 147 IVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFY 206
+ +F I+ FW+ ++ E + +FC+ D + Y
Sbjct: 279 AINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CDSILY 323
Query: 207 QNLVEVLIPDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLS 264
+ L +VLIP + +L D W E W N E +K + + F
Sbjct: 324 KVLTDVLIPATMQEMPESLLADIRNFAKNW-EQWVVSSLENLPEALTDKKIPIVRRF--- 379
Query: 265 KCVPVQAFVRRVDF----------LFYQNLVEVLIPDVLR 294
V + R+ F LF Q++V ++ D+ R
Sbjct: 380 ----VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIER 415
>gi|426354368|ref|XP_004044636.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein RFX6 [Gorilla
gorilla gorilla]
Length = 934
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 146/280 (52%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 281 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 325
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + + K+ V F
Sbjct: 326 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRF 385
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ RVD +++ QA S ++ +
Sbjct: 386 VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIERVDLNSIGSQALLTISGSTDTESGI 445
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 446 YTEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDFLLKW 505
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 506 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 545
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 100/278 (35%), Gaps = 64/278 (23%)
Query: 31 SKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNSNP 90
S+YHYYGI +K S + S + G R KL + +Y T
Sbjct: 194 SRYHYYGIGIKESSAYYHSVYSGK-GLTRFSGSKLKNEGGFTRKYSLSSKT--------- 243
Query: 91 SPQSGNHNFLGDGSNAIPDFPEID--LSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIV 148
+P+FP + + C+ +D VDT +Y+ HC+ LD +
Sbjct: 244 -------------GTLLPEFPSAQHLVYQGCISKD----KVDTLIMMYKTHCQCILDNAI 286
Query: 149 TLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQN 208
+F I+ FW+ ++ E + +FC+ D + Y+
Sbjct: 287 NGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CDSILYKV 331
Query: 209 LVEVLIPDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKC 266
L +VLIP + +L D W E W N E +K + + F
Sbjct: 332 LTDVLIPATMQEMPESLLADIRNFAKNW-EQWVVSSLENLPEALTDKKIPIVRRF----- 385
Query: 267 VPVQAFVRRVDF----------LFYQNLVEVLIPDVLR 294
V + R+ F LF Q++V ++ D+ R
Sbjct: 386 --VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIER 421
>gi|359068722|ref|XP_003586511.1| PREDICTED: DNA-binding protein RFX6-like [Bos taurus]
Length = 927
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 146/280 (52%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 274 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 318
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + + K+ V F
Sbjct: 319 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRF 378
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ +VD +++ QA S ++ +
Sbjct: 379 VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIEKVDLNSIGSQALLTISGSTDTESDI 438
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 439 YTEYDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDFLLKW 498
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 499 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 538
>gi|358413752|ref|XP_003582649.1| PREDICTED: DNA-binding protein RFX6-like [Bos taurus]
Length = 927
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 146/280 (52%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 274 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 318
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + + K+ V F
Sbjct: 319 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRF 378
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ +VD +++ QA S ++ +
Sbjct: 379 VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIEKVDLNSIGSQALLTISGSTDTESDI 438
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 439 YTEYDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDFLLKW 498
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 499 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 538
>gi|291396853|ref|XP_002714818.1| PREDICTED: regulatory factor X, 6 [Oryctolagus cuniculus]
Length = 928
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 145/280 (51%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 275 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 319
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + + K+ V F
Sbjct: 320 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRF 379
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ +VD +++ QA S D+
Sbjct: 380 VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIEKVDLNSIGSQALLTISGSADTDSDS 439
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 440 YTEYDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDFLLKW 499
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 500 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 539
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 101/278 (36%), Gaps = 64/278 (23%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G+SKYHYYGI +K S + S + G R KL + +Y T
Sbjct: 186 GHSKYHYYGIGIKESSAYYHSVYSGK-GLTRFSGSKLKNEGGFTRKYSLSSKT------- 237
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEID--LSEDCLPEDCTIEDVDTFRSIYREHCEAFLDA 146
+P+FP + + C+ +D VDT +Y+ HC+ LD
Sbjct: 238 ---------------GTLLPEFPSAQHLVYQGCISKD----KVDTLIMMYKTHCQCILDN 278
Query: 147 IVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFY 206
+ +F I+ FW+ ++ E + +FC+ D + Y
Sbjct: 279 AINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CDSILY 323
Query: 207 QNLVEVLIPDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLS 264
+ L +VLIP + +L D W E W N E +K + + F
Sbjct: 324 KVLTDVLIPATMQEMPESLLADIRNFAKNW-EQWVVSSLENLPEALTDKKIPIVRRF--- 379
Query: 265 KCVPVQAFVRRVDF----------LFYQNLVEVLIPDV 292
V + R+ F LF Q++V ++ D+
Sbjct: 380 ----VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDI 413
>gi|426234479|ref|XP_004011223.1| PREDICTED: DNA-binding protein RFX6 [Ovis aries]
Length = 927
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 149/281 (53%), Gaps = 28/281 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 274 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 318
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + + K+ V F
Sbjct: 319 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRF 378
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ +VD +++ QA S ++ +
Sbjct: 379 VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIEKVDLNSIGSQALLTISGSTDTESDI 438
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVVNA-VLKPFE--GKPNFTKAARQFLLK 445
+ +S + K L++ ++E + WL VV V+K + G+ + K A+ FLLK
Sbjct: 439 YTEYDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGR-SLKKRAQDFLLK 497
Query: 446 WSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
WSF+ + V+ +LTL +A SFGSFHLIR+L DEY+ +E Q
Sbjct: 498 WSFFGARVMHNLTLNNAPSFGSFHLIRMLLDEYILLAMETQ 538
>gi|338710647|ref|XP_001916865.2| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein RFX6-like
[Equus caballus]
Length = 902
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 146/280 (52%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 249 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 293
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + + K+ V F
Sbjct: 294 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRF 353
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ +VD +++ QA S ++ +
Sbjct: 354 VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIEKVDLNSIGSQALLTISGSTDTESDI 413
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 414 YTEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDFLLKW 473
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 474 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 513
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 95/247 (38%), Gaps = 46/247 (18%)
Query: 61 KKYKLVKTDSNSNQYGSEGHTT-AGQTNSNPSPQSGNHNFLGDGSNAIPDFPEID--LSE 117
+K+ L+ T + G+ GH+ +G N + ++ +P+FP + +
Sbjct: 172 QKFPLLTT----RRLGTRGHSKFSGSKLKNEGGFTRKYSLSSKTGTLLPEFPSAQHLVYQ 227
Query: 118 DCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEE 177
C+ +D VDT +Y+ HC+ LD + +F I+ FW+ ++ E
Sbjct: 228 GCISKD----KVDTLIMMYKTHCQCILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENP 283
Query: 178 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL--DFSTIESLWR 235
+ +FC+ D + Y+ L +VLIP + +L D W
Sbjct: 284 VII---DIFCV------------CDSILYKVLTDVLIPATMQEMPESLLADIRNFAKNW- 327
Query: 236 EFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDF----------LFYQNLV 285
E W N E +K + + F V + R+ F LF Q++V
Sbjct: 328 EQWVVSSLENLPEALTDKKIPIVRRF-------VSSLKRQTSFLHLAQIARPALFDQHVV 380
Query: 286 EVLIPDV 292
++ D+
Sbjct: 381 NSMVSDI 387
>gi|326677234|ref|XP_684953.3| PREDICTED: DNA-binding protein RFX6 [Danio rerio]
gi|292630945|sp|Q5RJA1.2|RFX6_DANRE RecName: Full=DNA-binding protein RFX6; AltName: Full=Regulatory
factor X 6
Length = 848
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 146/278 (52%), Gaps = 24/278 (8%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + ++F I++ FW+ + + L L V V F D
Sbjct: 207 ILDNAINVNFEEIQNFLLHFWQG--------------MPEHLLPLLENPVIVDIFCV-CD 251
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + KV F
Sbjct: 252 SILYKVLTDVLIPATMQDMPESLLADIRNFAKHWEHWMLSSLENLPEILSEKKVPIARRF 311
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA--SWVCQCDASLVQ 395
L+R TS HLAQ AR L + + M+ D+++VD +++ QA S D+
Sbjct: 312 VSSLKRQTSFLHLAQIARPALFDQIVVTSMVNDIDKVDLNSIGSQALLSVTNDQDSDFYS 371
Query: 396 QLES-----DFKLTLQQQNSLEEWANWLKNVV-NAVLKPF-EGKPNFTKAARQFLLKWSF 448
+ +S + K L++ ++E + WL +VV V+KP + + K A+ FLLKWSF
Sbjct: 372 EYDSISVFQELKDLLRKNATVESFIEWLDSVVEQKVIKPSKQNGRSVKKRAQDFLLKWSF 431
Query: 449 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
+ + V+ +LTL +A SFGSFHLIR+L DEY+ IE Q
Sbjct: 432 FGARVMHNLTLNNATSFGSFHLIRMLLDEYILLAIETQ 469
>gi|348588020|ref|XP_003479765.1| PREDICTED: DNA-binding protein RFX6-like [Cavia porcellus]
Length = 926
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 148/279 (53%), Gaps = 25/279 (8%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I++ FW+ ++ + + +FC+ D
Sbjct: 275 ILDNAINGNFEEIQNFLLHFWQGMPDHLLPLLDNPVII---DIFCV------------CD 319
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + + K+ V F
Sbjct: 320 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRF 379
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA---SWVCQCDASLV 394
L+R TS HLAQ AR L + +N M++D+ +VD +++ QA S ++ +
Sbjct: 380 VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIEKVDLNSIGSQALTISGSADTESDIY 439
Query: 395 QQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKWS 447
+ +S + K L++ ++E + WL +VV + + + K A+ FLLKWS
Sbjct: 440 SEQDSITVFQELKDLLKKNATVEAFIEWLDSVVEQRVIKTSKQNGRSLKKRAQDFLLKWS 499
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
F+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 500 FFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 538
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 103/277 (37%), Gaps = 62/277 (22%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G+SKYHYYGI +K S + S + G R KL + +Y T
Sbjct: 186 GHSKYHYYGIGIKESSAYYHSVYSGK-GLTRFSGSKLKNEGGFTRKYSLSSKT------- 237
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIED-VDTFRSIYREHCEAFLDAI 147
+P+FP ++ + + C +D VDT +Y+ HC+ LD
Sbjct: 238 ---------------GTLLPEFPS---AQHLVYQGCVSKDKVDTLIMMYKTHCQCILDNA 279
Query: 148 VTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQ 207
+ +F I++ FW+ ++ + + +FC+ D + Y+
Sbjct: 280 INGNFEEIQNFLLHFWQGMPDHLLPLLDNPVII---DIFCV------------CDSILYK 324
Query: 208 NLVEVLIPDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSK 265
L +VLIP + +L D W E W N E +K + + F
Sbjct: 325 VLTDVLIPATMQEMPESLLADIRNFAKNW-EQWVVSSLENLPEALTDKKIPIVRRF---- 379
Query: 266 CVPVQAFVRRVDF----------LFYQNLVEVLIPDV 292
V + R+ F LF Q++V ++ D+
Sbjct: 380 ---VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDI 413
>gi|301777466|ref|XP_002924145.1| PREDICTED: DNA-binding protein RFX6-like [Ailuropoda melanoleuca]
gi|292630941|sp|D2HNW6.2|RFX6_AILME RecName: Full=DNA-binding protein RFX6; AltName: Full=Regulatory
factor X 6
Length = 928
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 146/280 (52%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 275 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 319
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + + K+ V F
Sbjct: 320 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRF 379
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ +VD +++ QA S ++ +
Sbjct: 380 VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIEKVDLNSIGSQALLTISGSTDTESDI 439
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 440 YTEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDFLLKW 499
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 500 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 539
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 101/278 (36%), Gaps = 64/278 (23%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G+SKYHYYGI +K S + S + G R KL + +Y T
Sbjct: 186 GHSKYHYYGIGIKESSAYYHSVYSGK-GLTRFSGSKLKNEGGFTRKYSLSSKT------- 237
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEID--LSEDCLPEDCTIEDVDTFRSIYREHCEAFLDA 146
+P+FP + + C+ +D VDT +Y+ HC+ LD
Sbjct: 238 ---------------GTLLPEFPSAQHLVYQGCISKD----KVDTLIMMYKTHCQCILDN 278
Query: 147 IVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFY 206
+ +F I+ FW+ ++ E + +FC+ D + Y
Sbjct: 279 AINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CDSILY 323
Query: 207 QNLVEVLIPDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLS 264
+ L +VLIP + +L D W E W N E +K + + F
Sbjct: 324 KVLTDVLIPATMQEMPESLLADIRNFAKNW-EQWVVSSLENLPEALTDKKIPIVRRF--- 379
Query: 265 KCVPVQAFVRRVDF----------LFYQNLVEVLIPDV 292
V + R+ F LF Q++V ++ D+
Sbjct: 380 ----VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDI 413
>gi|73946275|ref|XP_541213.2| PREDICTED: DNA-binding protein RFX6 [Canis lupus familiaris]
Length = 922
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 146/280 (52%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 269 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 313
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + + K+ V F
Sbjct: 314 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRF 373
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ +VD +++ QA S ++ +
Sbjct: 374 VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIEKVDLNSIGSQALLTISGSTDTESDI 433
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 434 YTEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDFLLKW 493
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 494 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 533
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 101/278 (36%), Gaps = 64/278 (23%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G+SKYHYYGI +K S + S + G R KL + +Y T
Sbjct: 180 GHSKYHYYGIGIKESSAYYHSVYSGK-GLTRFSGSKLKNEGGFTRKYSLSSKT------- 231
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEID--LSEDCLPEDCTIEDVDTFRSIYREHCEAFLDA 146
+P+FP + + C+ +D VDT +Y+ HC+ LD
Sbjct: 232 ---------------GTLLPEFPSAQHLVYQGCISKD----KVDTLIMMYKTHCQCILDN 272
Query: 147 IVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFY 206
+ +F I+ FW+ ++ E + +FC+ D + Y
Sbjct: 273 AINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CDSILY 317
Query: 207 QNLVEVLIPDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLS 264
+ L +VLIP + +L D W E W N E +K + + F
Sbjct: 318 KVLTDVLIPATMQEMPESLLADIRNFAKNW-EQWVVSSLENLPEALTDKKIPIVRRF--- 373
Query: 265 KCVPVQAFVRRVDF----------LFYQNLVEVLIPDV 292
V + R+ F LF Q++V ++ D+
Sbjct: 374 ----VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDI 407
>gi|363732309|ref|XP_419769.3| PREDICTED: DNA-binding protein RFX6 [Gallus gallus]
Length = 937
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 145/279 (51%), Gaps = 26/279 (9%)
Query: 219 LDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDF 278
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 285 LDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPIIVD---IFCV------------CDS 329
Query: 279 LFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFA 338
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ +++ K+ F
Sbjct: 330 ILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPETLMDKKLPIARRFV 389
Query: 339 QMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASLV 394
L+R TS HLAQ AR L + +N M++D+ +VD +++ QA S D +
Sbjct: 390 SSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIEKVDLNSIGSQALLAVSGSTDTDGEVY 449
Query: 395 QQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKWS 447
+ +S + K L++ ++E + WL VV + + + K A+ FLLKWS
Sbjct: 450 NEYDSITVFQELKDLLKKNATVESFIEWLDTVVEQRVIKASKQNGRSLKKRAQDFLLKWS 509
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
F+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 510 FFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 548
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 103/277 (37%), Gaps = 62/277 (22%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G+SKYHYYGI +K S + S + G R KL + +Y T
Sbjct: 195 GHSKYHYYGIGIKESSAYYHSVYSGK-GLTRFSGSKLKNEGGFTRKYSLSSKT------- 246
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIED-VDTFRSIYREHCEAFLDAI 147
+P+FP ++ L + C +D VDT +Y+ HC+ LD
Sbjct: 247 ---------------GTLLPEFPS---AQHLLLQGCISKDKVDTLIMMYKTHCQCVLDNA 288
Query: 148 VTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQ 207
+ +F I+ FW+ ++ E + +FC+ D + Y+
Sbjct: 289 INGNFEEIQHFLLHFWQGMPDHLLPLLENPIIVD---IFCV------------CDSILYK 333
Query: 208 NLVEVLIPDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSK 265
L +VLIP + +L D W E W N E +K L ++ F
Sbjct: 334 VLTDVLIPATMQEMPESLLADIRNFAKNW-EQWVVSSLENLPETLMDKKLPIARRF---- 388
Query: 266 CVPVQAFVRRVDF----------LFYQNLVEVLIPDV 292
V + R+ F LF Q++V ++ D+
Sbjct: 389 ---VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDI 422
>gi|354496538|ref|XP_003510383.1| PREDICTED: DNA-binding protein RFX6-like [Cricetulus griseus]
Length = 1090
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 142/280 (50%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 437 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 481
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + + K+ V F
Sbjct: 482 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRF 541
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQL 397
L+R TS HLAQ AR L + +N M++D+ +VD +++ QA + +
Sbjct: 542 VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIEKVDLNSIGSQALLTIPSNTDTESDI 601
Query: 398 ES---------DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 602 YSEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDFLLKW 661
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 662 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 701
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 101/278 (36%), Gaps = 64/278 (23%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G+SKYHYYGI +K S + S + G R KL + +Y T
Sbjct: 348 GHSKYHYYGIGIKESSAYYHSVYSGK-GLTRFSGSKLKNEGGFTRKYSLSSKT------- 399
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEID--LSEDCLPEDCTIEDVDTFRSIYREHCEAFLDA 146
+P+FP + + C+ +D VDT +Y+ HC+ LD
Sbjct: 400 ---------------GTLLPEFPSAQHLVYQGCISKD----KVDTLIMMYKTHCQCILDN 440
Query: 147 IVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFY 206
+ +F I+ FW+ ++ E + +FC+ D + Y
Sbjct: 441 AINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CDSILY 485
Query: 207 QNLVEVLIPDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLS 264
+ L +VLIP + +L D W E W N E +K + + F
Sbjct: 486 KVLTDVLIPATMQEMPESLLADIRNFAKNW-EQWVVSSLENLPEALTDKKIPIVRRF--- 541
Query: 265 KCVPVQAFVRRVDF----------LFYQNLVEVLIPDV 292
V + R+ F LF Q++V ++ D+
Sbjct: 542 ----VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDI 575
>gi|28893413|ref|NP_796280.1| DNA-binding protein RFX6 isoform 2 [Mus musculus]
gi|26325746|dbj|BAC26627.1| unnamed protein product [Mus musculus]
gi|126362035|gb|AAI32105.1| Regulatory factor X, 6 [Mus musculus]
gi|126522459|gb|AAI32295.1| Regulatory factor X, 6 [Mus musculus]
gi|148673121|gb|EDL05068.1| regulatory factor X domain containing 1, isoform CRA_a [Mus
musculus]
Length = 663
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 147/280 (52%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 10 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 54
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ +I+ K+ + F
Sbjct: 55 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALIDKKIPILRRF 114
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ +VD +++ QA S ++ +
Sbjct: 115 VSSLKRQTSFLHLAQIARPALFDQHVVNAMVSDIEKVDLNSIGSQALLTISNSTDTESDI 174
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 175 YSEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKMSKQNGRSLKKRAQDFLLKW 234
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 235 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 274
>gi|449497894|ref|XP_002190338.2| PREDICTED: DNA-binding protein RFX6 [Taeniopygia guttata]
Length = 942
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 145/279 (51%), Gaps = 26/279 (9%)
Query: 219 LDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDF 278
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 291 LDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CDS 335
Query: 279 LFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFA 338
+ Y+ L +VLIP ++ +P SL + IR+FAK E W+ ++++ P+ +I+ K+ F
Sbjct: 336 ILYKVLTDVLIPATMQEMPESLLADIRSFAKNWEQWVASSLENLPESLIDKKLPIARRFV 395
Query: 339 QMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASLV 394
L+R TS HLAQ AR L + +N M++D+ +VD +++ QA S D +
Sbjct: 396 SSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIEKVDLNSIGSQALLAVSGSTDSDGEVY 455
Query: 395 QQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKWS 447
+ +S + K L++ ++E + WL VV + + + K A+ FLLKWS
Sbjct: 456 SEYDSITVFQELKDLLKKNATVESFIEWLDTVVEQRVIKASKQNGRSLKKRAQDFLLKWS 515
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
F+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 516 FFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 554
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 105/277 (37%), Gaps = 62/277 (22%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G+SKYHYYGI +K S + S + G R KL + +Y T
Sbjct: 201 GHSKYHYYGIGIKESSAYYHSVYSGK-GLTRFSGSKLKNEGGFTRKYSLSSKT------- 252
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIED-VDTFRSIYREHCEAFLDAI 147
+P+FP ++ L + C +D VDT +Y+ HC+ LD
Sbjct: 253 ---------------GTLLPEFPS---AQHLLLQGCISKDKVDTLIMMYKTHCQCVLDNA 294
Query: 148 VTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQ 207
+ +F I+ FW+ ++ E + +FC+ D + Y+
Sbjct: 295 INGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CDSILYK 339
Query: 208 NLVEVLIPDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSK 265
L +VLIP + +L D + W E W + N E +K L ++ F
Sbjct: 340 VLTDVLIPATMQEMPESLLADIRSFAKNW-EQWVASSLENLPESLIDKKLPIARRF---- 394
Query: 266 CVPVQAFVRRVDF----------LFYQNLVEVLIPDV 292
V + R+ F LF Q++V ++ D+
Sbjct: 395 ---VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDI 428
>gi|226874821|ref|NP_001152861.1| DNA-binding protein RFX6 isoform 1 [Mus musculus]
gi|166225160|sp|Q8C7R7.2|RFX6_MOUSE RecName: Full=DNA-binding protein RFX6; AltName: Full=Regulatory
factor X 6; AltName: Full=Regulatory factor X
domain-containing protein 1
Length = 927
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 147/280 (52%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 274 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 318
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ +I+ K+ + F
Sbjct: 319 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALIDKKIPILRRF 378
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ +VD +++ QA S ++ +
Sbjct: 379 VSSLKRQTSFLHLAQIARPALFDQHVVNAMVSDIEKVDLNSIGSQALLTISNSTDTESDI 438
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 439 YSEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKMSKQNGRSLKKRAQDFLLKW 498
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 499 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 538
>gi|410959934|ref|XP_003986553.1| PREDICTED: DNA-binding protein RFX6 [Felis catus]
Length = 935
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 145/280 (51%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 282 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 326
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P + + K+ V F
Sbjct: 327 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPDALTDKKIPIVRRF 386
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ +VD +++ QA S ++ +
Sbjct: 387 VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIEKVDLNSIGSQALLTISGSTDTESDI 446
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 447 YTEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDFLLKW 506
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 507 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 546
>gi|344264461|ref|XP_003404310.1| PREDICTED: DNA-binding protein RFX6-like [Loxodonta africana]
Length = 929
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 145/280 (51%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 274 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 318
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L EVLIP ++ +P SL + IRNFAK E W+ ++++ P+ + + K+ V F
Sbjct: 319 SILYKVLTEVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRF 378
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HL Q AR L + +N M++D+ +VD +++ QA S ++ +
Sbjct: 379 VSSLKRQTSFLHLVQIARPALFDQHVVNSMVSDIEKVDLNSIGSQALLTISGSTDTESDI 438
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 439 YTEHDSITVFQELKDLLKKNATVEAFIEWLDAVVEQRVIKTSKQNGRSLKKRAQDFLLKW 498
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 499 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 538
>gi|126310919|ref|XP_001379614.1| PREDICTED: DNA-binding protein RFX6 [Monodelphis domestica]
Length = 932
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 146/279 (52%), Gaps = 26/279 (9%)
Query: 219 LDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDF 278
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 276 LDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVIID---IFCV------------CDS 320
Query: 279 LFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFA 338
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + + K+ V F
Sbjct: 321 ILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKLPIVRRFV 380
Query: 339 QMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASLV 394
L+R TS HLAQ AR L + +N M++D+ +VD +++ QA S ++ +
Sbjct: 381 SSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIEKVDLNSIGSQAFLTVSGSTDPESEVY 440
Query: 395 QQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKWS 447
+ +S + K L++ ++E + WL VV + + + K A+ FLLKWS
Sbjct: 441 TEYDSITVFQELKDLLKKNATVESFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDFLLKWS 500
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
F+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 501 FFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 539
>gi|326916013|ref|XP_003204306.1| PREDICTED: DNA-binding protein RFX6-like [Meleagris gallopavo]
Length = 871
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 145/279 (51%), Gaps = 26/279 (9%)
Query: 219 LDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDF 278
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 221 LDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPIIV---DIFCV------------CDS 265
Query: 279 LFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFA 338
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ +++ K+ F
Sbjct: 266 ILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEILMDKKLPIARRFV 325
Query: 339 QMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASLV 394
L+R TS HLAQ AR L + +N M++D+ +VD +++ QA S D +
Sbjct: 326 SSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIEKVDLNSIGSQALLAVSGSTDSDGEVY 385
Query: 395 QQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKWS 447
+ +S + K L++ ++E + WL VV + + + K A+ FLLKWS
Sbjct: 386 NEYDSITVFQELKDLLKKNATVESFIEWLDTVVEQRVIKASKQNGRSLKKRAQDFLLKWS 445
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
F+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 446 FFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 484
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 103/277 (37%), Gaps = 62/277 (22%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G+SKYHYYGI +K S + S + G R KL + +Y T
Sbjct: 131 GHSKYHYYGIGIKESSAYYHSVYSGK-GLTRFSGSKLKNEGGFTRKYSLSSKT------- 182
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIED-VDTFRSIYREHCEAFLDAI 147
+P+FP ++ L + C +D VDT +Y+ HC+ LD
Sbjct: 183 ---------------GTLLPEFPS---AQHLLLQGCISKDKVDTLIMMYKTHCQCVLDNA 224
Query: 148 VTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQ 207
+ +F I+ FW+ ++ E + +FC+ D + Y+
Sbjct: 225 INGNFEEIQHFLLHFWQGMPDHLLPLLENPIIV---DIFCV------------CDSILYK 269
Query: 208 NLVEVLIPDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSK 265
L +VLIP + +L D W E W N E +K L ++ F
Sbjct: 270 VLTDVLIPATMQEMPESLLADIRNFAKNW-EQWVVSSLENLPEILMDKKLPIARRF---- 324
Query: 266 CVPVQAFVRRVDF----------LFYQNLVEVLIPDV 292
V + R+ F LF Q++V ++ D+
Sbjct: 325 ---VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDI 358
>gi|157824059|ref|NP_001099858.1| DNA-binding protein RFX6 [Rattus norvegicus]
gi|149038659|gb|EDL92948.1| regulatory factor X domain containing 1 (predicted), isoform CRA_a
[Rattus norvegicus]
Length = 747
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 146/280 (52%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 94 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 138
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ +I+ K+ + F
Sbjct: 139 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALIDKKIPILRRF 198
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ +VD +++ QA S ++ +
Sbjct: 199 VSSLKRQTSFLHLAQIARPALFDQHVVNAMVSDIEKVDLNSIGSQALLTISNSTDTESDI 258
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 259 YSEYDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKMSKQNGRSLKKRAQDFLLKW 318
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGS HLIR+L DEY+ +E Q
Sbjct: 319 SFFGARVMHNLTLNNASSFGSLHLIRMLLDEYILLAMETQ 358
>gi|301617833|ref|XP_002938344.1| PREDICTED: DNA-binding protein RFX6-like [Xenopus (Silurana)
tropicalis]
Length = 925
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 146/284 (51%), Gaps = 36/284 (12%)
Query: 219 LDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDF 278
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 276 LDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPIIID---IFCV------------CDS 320
Query: 279 LFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFA 338
+ Y+ L EVLIP ++ +P SL + IRNFAK E W+ ++++ P+ + K+ F
Sbjct: 321 ILYKVLTEVLIPATMQEMPESLLADIRNFAKHWEQWVVSSLENLPESLSEKKLPIARRFV 380
Query: 339 QMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDAS------ 392
L+R TS HLAQ AR L + +N M +D+ +VD ++ QA + C +
Sbjct: 381 SSLKRQTSFLHLAQIARPALFDQNVVNSMTSDIEKVDLCSIGSQA-LLTSCSGADSDCDV 439
Query: 393 -------LVQQLESDFKLTLQQQNSLEEWANWLKNVV-NAVLKPFE--GKPNFTKAARQF 442
LV Q + K L++ ++E + WL NVV V+K + GK + K A+ F
Sbjct: 440 YTEHCFFLVFQ---ELKDLLKKNATVESFIEWLDNVVEQKVIKASKQNGK-SLKKRAQDF 495
Query: 443 LLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
LLKWSF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 496 LLKWSFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAVETQ 539
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 102/277 (36%), Gaps = 62/277 (22%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G+SKYHYYGI +K S + S + G R KL + +Y T
Sbjct: 186 GHSKYHYYGIGIKESSAYYHSVYSGK-GLTRFSGSKLKSEGGFTRKYSLSSKT------- 237
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDC-TIEDVDTFRSIYREHCEAFLDAI 147
+P+FP ++ + + C + E VDT +Y+ HC+ LD
Sbjct: 238 ---------------GTLLPEFPS---AQHLVLQGCISKEKVDTLIMMYKTHCQCVLDNA 279
Query: 148 VTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQ 207
+ +F I+ FW+ ++ E + +FC+ D + Y+
Sbjct: 280 INGNFEEIQHFLLHFWQGMPDHLLPLLENPIII---DIFCV------------CDSILYK 324
Query: 208 NLVEVLIPDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSK 265
L EVLIP + +L D W + W N E EK L ++ F
Sbjct: 325 VLTEVLIPATMQEMPESLLADIRNFAKHWEQ-WVVSSLENLPESLSEKKLPIARRF---- 379
Query: 266 CVPVQAFVRRVDF----------LFYQNLVEVLIPDV 292
V + R+ F LF QN+V + D+
Sbjct: 380 ---VSSLKRQTSFLHLAQIARPALFDQNVVNSMTSDI 413
>gi|351695487|gb|EHA98405.1| DNA-binding protein RFX6, partial [Heterocephalus glaber]
Length = 800
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 140/280 (50%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 148 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVIV---DIFCV------------CD 192
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ +++ P+ + + K+ V F
Sbjct: 193 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLANLPEALTDKKIPIVRRF 252
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQL 397
L+R TS HLAQ AR L + +N M++D+ +VD +++ QA A
Sbjct: 253 VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIEKVDLNSIGSQALLTISGSADTESDS 312
Query: 398 ES---------DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 313 YSEHDSITVFQELKDLLKKNATVEAFVEWLDTVVEQRVIKTSKQNGRSLKKRAQDFLLKW 372
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 373 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 412
>gi|395534835|ref|XP_003769442.1| PREDICTED: DNA-binding protein RFX6 [Sarcophilus harrisii]
Length = 930
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 145/280 (51%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 273 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVIID---IFCV------------CD 317
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + K+ V F
Sbjct: 318 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTEKKLPIVRRF 377
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ +VD +++ QA S ++ +
Sbjct: 378 VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIEKVDLNSIGSQAFLTVSGSTDPESEV 437
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 438 YTEYDSITVFQELKDLLKKNATVESFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDFLLKW 497
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 498 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 537
>gi|449277977|gb|EMC85977.1| DNA-binding protein RFX6, partial [Columba livia]
Length = 857
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 143/279 (51%), Gaps = 26/279 (9%)
Query: 219 LDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDF 278
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 207 LDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPIII---DIFCV------------CDS 251
Query: 279 LFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFA 338
+ Y+ L +VLIP ++ +P L + IRNFAK E W+ ++++ P+ + + K+ F
Sbjct: 252 ILYKVLTDVLIPATMQEMPEGLLADIRNFAKNWEQWVVSSLENLPENLTDKKLPIARRFV 311
Query: 339 QMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASLV 394
L+R TS HLAQ AR L + +N M++D+ +VD +++ QA S D +
Sbjct: 312 SSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIEKVDLNSIGSQALLAVSGSTDSDGEVY 371
Query: 395 QQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKWS 447
+ +S + K L++ ++E + WL VV + + + K A+ FLLKWS
Sbjct: 372 SEYDSITVFQELKDLLKKNATVESFIEWLDTVVEQRVIKASKQNGRSLKKRAQDFLLKWS 431
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
F+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 432 FFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 470
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 102/277 (36%), Gaps = 62/277 (22%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G+SKYHYYGI +K S + S + G R KL + +Y T
Sbjct: 117 GHSKYHYYGIGIKESSAYYHSVYSGK-GLTRFSGSKLKNEGGFTRKYSLSSKT------- 168
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIED-VDTFRSIYREHCEAFLDAI 147
+P+FP ++ L + C +D VDT +Y+ HC+ LD
Sbjct: 169 ---------------GTLLPEFPS---AQHLLLQGCISKDKVDTLIMMYKTHCQCVLDNA 210
Query: 148 VTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQ 207
+ +F I+ FW+ ++ E + +FC+ D + Y+
Sbjct: 211 INGNFEEIQHFLLHFWQGMPDHLLPLLENPIII---DIFCV------------CDSILYK 255
Query: 208 NLVEVLIPDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSK 265
L +VLIP + L D W E W N E +K L ++ F
Sbjct: 256 VLTDVLIPATMQEMPEGLLADIRNFAKNW-EQWVVSSLENLPENLTDKKLPIARRF---- 310
Query: 266 CVPVQAFVRRVDF----------LFYQNLVEVLIPDV 292
V + R+ F LF Q++V ++ D+
Sbjct: 311 ---VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDI 344
>gi|440905163|gb|ELR55583.1| DNA-binding protein RFX6 [Bos grunniens mutus]
Length = 926
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 144/279 (51%), Gaps = 25/279 (8%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 274 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 318
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + + K+ V F
Sbjct: 319 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRF 378
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ +VD +++ QA S ++ +
Sbjct: 379 VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIEKVDLNSIGSQALLTISGSTDTESDI 438
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVVNA-VLKPFEGKPNFTKAARQFLLKWS 447
+ +S + K L++ ++E + WL VV V+K + K Q LKWS
Sbjct: 439 YTEYDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDFLKWS 498
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
F+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 499 FFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 537
>gi|355748952|gb|EHH53435.1| hypothetical protein EGM_14074 [Macaca fascicularis]
Length = 932
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 146/284 (51%), Gaps = 30/284 (10%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 275 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 319
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSS----IRNFAKGVESWLTNAMQGCPQEMINIKVTA 333
+ Y+ L +VLIP ++ +P SL S IRNFAK E W+ ++++ P+ + + K+
Sbjct: 320 SILYKVLTDVLIPATMQEMPESLLCSLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPI 379
Query: 334 VGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQC 389
V F L+R TS HLAQ AR L + +N M++D+ RVD +++ QA S
Sbjct: 380 VRRFVSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIERVDLNSIASQALLTISGSTDT 439
Query: 390 DASLVQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQF 442
++ + + +S + K L++ ++E + WL VV + + + K A+ F
Sbjct: 440 ESGIYTEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDF 499
Query: 443 LLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
LLKWSF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 500 LLKWSFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 543
>gi|355562111|gb|EHH18743.1| hypothetical protein EGK_15407 [Macaca mulatta]
Length = 932
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 146/284 (51%), Gaps = 30/284 (10%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 275 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 319
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSS----IRNFAKGVESWLTNAMQGCPQEMINIKVTA 333
+ Y+ L +VLIP ++ +P SL S IRNFAK E W+ ++++ P+ + + K+
Sbjct: 320 SILYKVLTDVLIPATMQEMPESLLCSLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPI 379
Query: 334 VGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQC 389
V F L+R TS HLAQ AR L + +N M++D+ RVD +++ QA S
Sbjct: 380 VRRFVSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIERVDLNSIASQALLTISGSTDT 439
Query: 390 DASLVQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQF 442
++ + + +S + K L++ ++E + WL VV + + + K A+ F
Sbjct: 440 ESGIYTEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDF 499
Query: 443 LLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
LLKWSF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 500 LLKWSFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 543
>gi|431838746|gb|ELK00676.1| DNA-binding protein RFX6 [Pteropus alecto]
Length = 828
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 126/218 (57%), Gaps = 11/218 (5%)
Query: 280 FYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQ 339
F + L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + + K+ V F
Sbjct: 222 FEEVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRFVS 281
Query: 340 MLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASLVQ 395
L+R TS HLAQ AR L + +N M++D+ +VD +++ QA S ++ +
Sbjct: 282 SLKRQTSFLHLAQIARPALFDQHVVNSMVSDIEKVDLNSIGSQALLTISGSTDTESDIYT 341
Query: 396 QLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKWSF 448
+ +S + K L++ ++E + WL VV + + + K A+ FLLKWSF
Sbjct: 342 EHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDFLLKWSF 401
Query: 449 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 402 FGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 439
>gi|12855717|dbj|BAB30432.1| unnamed protein product [Mus musculus]
Length = 382
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 132/258 (51%), Gaps = 21/258 (8%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++SL FW+ + + + V V D
Sbjct: 118 ILDTVIRANFDEVQSLLLHFWQGMPPH---------------MLPVLGSSTVVNIVGVCD 162
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 163 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 222
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDAS----L 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD ++ +Q + + L
Sbjct: 223 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLSSITKQTLYTMEDSRDEHRRL 282
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 283 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 342
Query: 452 MVIRDLTLRSAASFGSFH 469
VIRD+TL SA SFG F+
Sbjct: 343 RVIRDMTLHSAPSFGLFY 360
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 27/133 (20%)
Query: 33 YHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSP 92
YHYYGI VK S + Y ++ + + G + SP
Sbjct: 33 YHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKREVTKQTVAYSP 76
Query: 93 QSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLD 151
+S LG +PDFP + DL+ LP E V TF +YR HC+ LD ++ +
Sbjct: 77 RSK----LG---TLLPDFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTVIRAN 126
Query: 152 FSTIESLWREFWR 164
F ++SL FW+
Sbjct: 127 FDEVQSLLLHFWQ 139
>gi|432951122|ref|XP_004084732.1| PREDICTED: DNA-binding protein RFX6-like [Oryzias latipes]
Length = 709
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 143/280 (51%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + ++F I++ FW+ N+ L L V V F D
Sbjct: 251 ILDNAINVNFEEIQNFLLHFWQGMPNH--------------LLPLLQTPVIVNVFCV-CD 295
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IR+FAK E WL ++++ P+ + K+ F
Sbjct: 296 SILYKVLTDVLIPATMQEMPESLLADIRSFAKHWEHWLASSLENLPECLAAKKLPIARCF 355
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQL 397
L+R TS HLAQ AR L + + M+ D+++VD ++ Q L +
Sbjct: 356 VSSLKRQTSFLHLAQIARPALFDQAVVTSMVQDIDQVDLSSISSQPVLNITTPRGLDSDI 415
Query: 398 ESDF---------KLTLQQQNSLEEWANWLKNVV-NAVLKPF-EGKPNFTKAARQFLLKW 446
S++ K L++ ++E + WL +VV V+KP + + K A+ FLL+W
Sbjct: 416 YSEYDSISIFQELKELLRKNATVESFIEWLDSVVEQKVIKPGKQSGRSVRKRAQDFLLRW 475
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 476 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLALETQ 515
>gi|392341436|ref|XP_002726934.2| PREDICTED: transcription factor RFX4-like [Rattus norvegicus]
Length = 693
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 130/257 (50%), Gaps = 21/257 (8%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 264 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 308
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 309 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 368
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD ++ +Q + + L
Sbjct: 369 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLSSITKQTLYTMEDSRDEHRRL 428
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 429 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 488
Query: 452 MVIRDLTLRSAASFGSF 468
VIRD+TL SA SFG+
Sbjct: 489 RVIRDMTLHSAPSFGAM 505
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 175 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKREVTKQTV 218
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +PDFP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 219 AYSPRSK----LG---TLLPDFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 268
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 269 IRANFDEVQSFLLHFWQ 285
>gi|432094369|gb|ELK25946.1| Transcription factor RFX4 [Myotis davidii]
Length = 1502
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 134/273 (49%), Gaps = 33/273 (12%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 351 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 395
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK G
Sbjct: 396 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFERAGWI 455
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 456 G------------LQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSHEEHRKL 503
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 504 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLRKVAQQFLLMWSCFGT 563
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 564 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 596
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 27/136 (19%)
Query: 30 NSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNSN 89
+ +YHYYGI VK S + Y ++ + + G +
Sbjct: 263 HQRYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTVA 306
Query: 90 PSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIV 148
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD ++
Sbjct: 307 YSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTVI 356
Query: 149 TLDFSTIESLWREFWR 164
+F ++S FW+
Sbjct: 357 RANFDEVQSFLLHFWQ 372
>gi|148689462|gb|EDL21409.1| regulatory factor X, 4 (influences HLA class II expression),
isoform CRA_b [Mus musculus]
Length = 382
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 131/258 (50%), Gaps = 21/258 (8%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + + + V V D
Sbjct: 118 ILDTVIRANFDEVQSFLLHFWQGMPPH---------------MLPVLGSSTVVNIVGVCD 162
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 163 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 222
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDAS----L 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD ++ +Q + + L
Sbjct: 223 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLSSITKQTLYTMEDSRDEHRRL 282
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 283 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 342
Query: 452 MVIRDLTLRSAASFGSFH 469
VIRD+TL SA SFG F+
Sbjct: 343 RVIRDMTLHSAPSFGLFY 360
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 27/133 (20%)
Query: 33 YHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSP 92
YHYYGI VK S + Y ++ + + G + SP
Sbjct: 33 YHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKREVTKQTVAYSP 76
Query: 93 QSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLD 151
+S LG +PDFP + DL+ LP E V TF +YR HC+ LD ++ +
Sbjct: 77 RSK----LG---TLLPDFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTVIRAN 126
Query: 152 FSTIESLWREFWR 164
F ++S FW+
Sbjct: 127 FDEVQSFLLHFWQ 139
>gi|348538549|ref|XP_003456753.1| PREDICTED: DNA-binding protein RFX6-like [Oreochromis niloticus]
Length = 866
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 144/280 (51%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + ++F I++ FW+ ++ E + +FC+ D
Sbjct: 229 ILDNAINVNFEEIQNFLLHFWQGMPDHLLPLLENPVIV---DIFCV------------CD 273
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E WL ++++ P+ + K+ F
Sbjct: 274 SILYKVLTDVLIPATMQEMPESLLADIRNFAKYWEHWLASSLENLPECLAAKKLPIARRF 333
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC----DASL 393
L+R TS HLAQ AR L + + M+ D++ VD ++ Q D +
Sbjct: 334 VSSLKRQTSFLHLAQIARPALFDQAVVTSMVLDIDNVDLSSISSQPLLSVTVNGDQDPDI 393
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV-NAVLKPF-EGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL +VV + V+KP + + K A+ FLL+W
Sbjct: 394 YSEYDSITVFQELKELLRKNATVESFIEWLDSVVEHKVIKPGKQSGRSVKKRAQDFLLRW 453
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 454 SFFGARVMHTLTLNNASSFGSFHLIRMLLDEYILLALETQ 493
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 102/276 (36%), Gaps = 60/276 (21%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G+SKYHYYGI +K S + S + G R KL + +Y T
Sbjct: 140 GHSKYHYYGIGIKESSAYYHSVYSGK-GLTRFSGSKLKNEGGFTRKYSLSSKT------- 191
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIV 148
+PDFP L + + E VDT +Y+ HC+ LD +
Sbjct: 192 ---------------GTLLPDFPSAQ--HLLLHGNISREKVDTLIMMYKTHCQCILDNAI 234
Query: 149 TLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQN 208
++F I++ FW+ ++ E + +FC+ D + Y+
Sbjct: 235 NVNFEEIQNFLLHFWQGMPDHLLPLLENPVIV---DIFCV------------CDSILYKV 279
Query: 209 LVEVLIPDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKC 266
L +VLIP + +L D W E W + N EC K L ++ F
Sbjct: 280 LTDVLIPATMQEMPESLLADIRNFAKYW-EHWLASSLENLPECLAAKKLPIARRF----- 333
Query: 267 VPVQAFVRRVDF----------LFYQNLVEVLIPDV 292
V + R+ F LF Q +V ++ D+
Sbjct: 334 --VSSLKRQTSFLHLAQIARPALFDQAVVTSMVLDI 367
>gi|410916129|ref|XP_003971539.1| PREDICTED: DNA-binding protein RFX6-like [Takifugu rubripes]
Length = 944
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 147/280 (52%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + ++F I++ FW+ ++ E + +FC+ D
Sbjct: 248 ILDNAINVNFEEIQNFLLHFWQGMPDHLLPLLENPVIV---DIFCV------------CD 292
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IR+FAK E WL ++++ P+ + K+ F
Sbjct: 293 SILYKVLTDVLIPATMQEMPESLLADIRSFAKHWEHWLASSLENLPECLAAKKLPIARHF 352
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC----QCDASL 393
L+R TS HLAQ AR L + + M++D++ +D ++ Q + D +
Sbjct: 353 VSSLKRQTSFLHLAQIARPALFDQAVVTGMVSDIDSIDLGSISSQPLLSMNANGESDPDI 412
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV-NAVLKPF-EGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL +V+ + V+KP + + K A+ FLL+W
Sbjct: 413 YSEYDSITVFQELKELLRKNATVESFIEWLDSVLEHKVIKPGKQSGRSVKKRAQDFLLRW 472
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 473 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLALETQ 512
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 109/286 (38%), Gaps = 60/286 (20%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G+SKYHYYGI +K S + S + G R KL + +Y T
Sbjct: 159 GHSKYHYYGIGIKESSAYYHSVYSGK-GLTRFSGSKLKNEGGFTRKYSLSSKT------- 210
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIV 148
+PDFP + L + + + V+T +Y+ HC+ LD +
Sbjct: 211 ---------------GTLLPDFP--NAQHLLLQGNISRDKVETLIMMYKTHCQCILDNAI 253
Query: 149 TLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQN 208
++F I++ FW+ ++ E + +FC+ D + Y+
Sbjct: 254 NVNFEEIQNFLLHFWQGMPDHLLPLLENPVIV---DIFCV------------CDSILYKV 298
Query: 209 LVEVLIPDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKC 266
L +VLIP + +L D + W E W + N EC K L ++ F
Sbjct: 299 LTDVLIPATMQEMPESLLADIRSFAKHW-EHWLASSLENLPECLAAKKLPIARHF----- 352
Query: 267 VPVQAFVRRVDF----------LFYQNLVEVLIPDVLRPIPGSLTS 302
V + R+ F LF Q +V ++ D+ GS++S
Sbjct: 353 --VSSLKRQTSFLHLAQIARPALFDQAVVTGMVSDIDSIDLGSISS 396
>gi|281345843|gb|EFB21427.1| hypothetical protein PANDA_013423 [Ailuropoda melanoleuca]
Length = 937
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 146/289 (50%), Gaps = 35/289 (12%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 275 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 319
Query: 278 FLFYQNLVEVLIPDVLRPIP---------GSLTSSIRNFAKGVESWLTNAMQGCPQEMIN 328
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + +
Sbjct: 320 SILYKVLTDVLIPATMQEMPERVFFFVCVCSLLADIRNFAKNWEQWVVSSLENLPEALTD 379
Query: 329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----S 384
K+ V F L+R TS HLAQ AR L + +N M++D+ +VD +++ QA S
Sbjct: 380 KKIPIVRRFVSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIEKVDLNSIGSQALLTIS 439
Query: 385 WVCQCDASLVQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTK 437
++ + + +S + K L++ ++E + WL VV + + + K
Sbjct: 440 GSTDTESDIYTEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKK 499
Query: 438 AARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
A+ FLLKWSF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 500 RAQDFLLKWSFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 548
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 72/189 (38%), Gaps = 44/189 (23%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G+SKYHYYGI +K S + S + G R KL + +Y T
Sbjct: 186 GHSKYHYYGIGIKESSAYYHSVYSGK-GLTRFSGSKLKNEGGFTRKYSLSSKT------- 237
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEID--LSEDCLPEDCTIEDVDTFRSIYREHCEAFLDA 146
+P+FP + + C+ +D VDT +Y+ HC+ LD
Sbjct: 238 ---------------GTLLPEFPSAQHLVYQGCISKD----KVDTLIMMYKTHCQCILDN 278
Query: 147 IVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFY 206
+ +F I+ FW+ ++ E + +FC+ D + Y
Sbjct: 279 AINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CDSILY 323
Query: 207 QNLVEVLIP 215
+ L +VLIP
Sbjct: 324 KVLTDVLIP 332
>gi|149067366|gb|EDM17099.1| similar to regulatory factor X 4 variant (predicted), isoform CRA_b
[Rattus norvegicus]
Length = 413
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 129/255 (50%), Gaps = 21/255 (8%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + + + V V D
Sbjct: 118 ILDTVIRANFDEVQSFLLHFWQGMPPH---------------MLPVLGSSTVVNIVGVCD 162
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 163 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 222
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDAS----L 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD ++ +Q + + L
Sbjct: 223 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLSSITKQTLYTMEDSRDEHRRL 282
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 283 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 342
Query: 452 MVIRDLTLRSAASFG 466
VIRD+TL SA SFG
Sbjct: 343 RVIRDMTLHSAPSFG 357
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 27/133 (20%)
Query: 33 YHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSP 92
YHYYGI VK S + Y ++ + + G + SP
Sbjct: 33 YHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKREVTKQTVAYSP 76
Query: 93 QSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLD 151
+S LG +PDFP + DL+ LP E V TF +YR HC+ LD ++ +
Sbjct: 77 RSK----LG---TLLPDFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTVIRAN 126
Query: 152 FSTIESLWREFWR 164
F ++S FW+
Sbjct: 127 FDEVQSFLLHFWQ 139
>gi|440798283|gb|ELR19351.1| RFX DNAbinding domain containing protein [Acanthamoeba castellanii
str. Neff]
Length = 1000
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 146/286 (51%), Gaps = 21/286 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
L+ + +F+ +E + R FW+S + + + C V + D
Sbjct: 336 LLNVMADHNFNEVEGVMRHFWQSL---------------PAHMHPVISCQGVIDQIAEKD 380
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y +V+ L+PDVL + S T ++R F++ E++++ A++G P E+ + K F
Sbjct: 381 EIVYAAVVDALVPDVLASVSFSFTQALREFSRQFETYISRALEGQPPELSSRKTKVGRNF 440
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDAS----- 392
A L R +N+++ AR VL + Q+ +L D +VDF+ + SWVC D S
Sbjct: 441 AGRLWREACMNYISCCARQVLMSPDQMTLVLRDWEKVDFNFILTSISWVCGADESPHTID 500
Query: 393 LVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSM 452
L+ ++ DFK LQQ+ SLE++A W+ ++ L + A+Q LL+WS++ +
Sbjct: 501 LLTSVQEDFKRILQQRYSLEQFAEWIFHLATRFLLGTDMM-QVMNCAQQLLLRWSYFHNF 559
Query: 453 VIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAV 498
++ D+T R +F +R+ +EY+ Y+++ ++A P+A+
Sbjct: 560 IMSDITTRKGPGLDAFRTLRMFMEEYLTYVLDRRLATLQLMRPVAL 605
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 107/253 (42%), Gaps = 45/253 (17%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRG 60
GNSKYHYYGIR+K SPL N P+ + + + + SP S+ S
Sbjct: 191 GNSKYHYYGIRIKTTSPLKNAPVPPDCESPASFPSPSL-----SPTGAPAASNSASSSPA 245
Query: 61 KKYKL-VKTDSNSNQYGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIP-DFPEIDLSED 118
KK +L V+ S + SE T+ P H + + S+ IP P I+ +
Sbjct: 246 KKARLKVEVMSPTPALTSEPPPPTAPTHLYPL-----HTAMANSSSIIPLPNPHIETARQ 300
Query: 119 CLPEDCTIEDV------------DTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQ 166
LPE +E + F +YR HC+ L+ + +F+ +E + R FW+S
Sbjct: 301 -LPEFPPLEPILSVNFRSQANSRQAFMGMYRSHCQHLLNVMADHNFNEVEGVMRHFWQSL 359
Query: 167 DNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLD 226
+ + + C V + D + Y +V+ L+P D + ++
Sbjct: 360 ---------------PAHMHPVISCQGVIDQIAEKDEIVYAAVVDALVP----DVLASVS 400
Query: 227 FSTIESLWREFWR 239
FS ++L REF R
Sbjct: 401 FSFTQAL-REFSR 412
>gi|390359356|ref|XP_003729465.1| PREDICTED: DNA-binding protein RFX6-like [Strongylocentrotus
purpuratus]
Length = 756
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 134/273 (49%), Gaps = 20/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD IV+ +F +++ FW+ + L CL + + D
Sbjct: 221 LLDVIVSNNFDEVQNFLLHFWQGLPPH---------------LSCLLTYDVILDVIILCD 265
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ IP SL++ IR FA+ + WL ++ P E+ K+ V F
Sbjct: 266 SVLYKVLNDVLIPAAIQDIPESLSNEIRLFARKLPVWLEMSLDQIPAEVKRRKLKVVRVF 325
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQL 397
Q LRR S HLAQ AR+VL + I +ML DL V QA + S V+ L
Sbjct: 326 VQSLRRQMSFIHLAQTARSVLLSHESITEMLRDLKEVTSLTSFHQAGLTEELKTSSVEML 385
Query: 398 ESDFKLTLQQQNSLEEWANWLKNVV-NAVLKPFEG---KPNFTKAARQFLLKWSFYSSMV 453
++F+ + +Q LE + W+ V+ + +LK F+ F A +FL+ WSF + +
Sbjct: 386 -AEFEALMNKQAPLESFIEWIDCVIDDRLLKAFDSDIDPAQFNSQASEFLMNWSFITGKL 444
Query: 454 IRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
+ + T+RS SFG FHL+ L+ EY IE Q
Sbjct: 445 MAEFTMRSLKSFGKFHLLNLMLQEYALLTIETQ 477
>gi|344253235|gb|EGW09339.1| Transcription factor RFX4 [Cricetulus griseus]
Length = 659
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 134/273 (49%), Gaps = 31/273 (11%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 198 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 242
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK
Sbjct: 243 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFEC---- 298
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDAS----L 393
RY A+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 299 -----RYLVCKQHG-ASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRRL 352
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKP--NFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 353 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKKQGSLKKVAQQFLLMWSCFGT 412
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 413 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 445
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 27/133 (20%)
Query: 33 YHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSP 92
YHYYGI VK S + Y ++ + + G + SP
Sbjct: 113 YHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKREVTKQTVAYSP 156
Query: 93 QSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLD 151
+S LG +PDFP + DL+ LP E V TF +YR HC+ LD ++ +
Sbjct: 157 RSK----LG---TLLPDFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTVIRAN 206
Query: 152 FSTIESLWREFWR 164
F ++S FW+
Sbjct: 207 FDEVQSFLLHFWQ 219
>gi|327261660|ref|XP_003215647.1| PREDICTED: DNA-binding protein RFX6-like [Anolis carolinensis]
Length = 963
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 142/279 (50%), Gaps = 26/279 (9%)
Query: 219 LDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDF 278
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 308 LDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVIID---IFCV------------CDS 352
Query: 279 LFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFA 338
+ Y+ L +VLIP ++ +P SL + IR+FAK E W+ ++++ P+++ K+ F
Sbjct: 353 ILYKVLTDVLIPATMQEMPESLLADIRSFAKNWEHWIVSSLENLPEDLTTKKLPIARRFV 412
Query: 339 QMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASLV 394
L+R TS LAQ AR L + +N M+ D+++VD +++ QA S D
Sbjct: 413 SSLKRQTSFLDLAQIARPALFDQHIVNAMVADIDKVDLYSIGTQALLAVSGSMDSDGESY 472
Query: 395 QQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKWS 447
+ +S + K L++ ++E + WL VV + + + K A+ FLLKWS
Sbjct: 473 IEYDSITVFQELKDLLKKNATVESFIEWLDTVVEQRVIKASKQNGRSLKKRAQDFLLKWS 532
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
F+ + V+ +LTL +A+SFGSFH+IR+L DEY+ +E Q
Sbjct: 533 FFGARVMHNLTLNNASSFGSFHVIRMLLDEYILLAMETQ 571
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 104/278 (37%), Gaps = 64/278 (23%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTT-AGQTN 87
G+SKYHYYGI +K S Y V Y +G T +G
Sbjct: 218 GHSKYHYYGIGIKESSAY----------------YHSV--------YSGKGLTRFSGSKM 253
Query: 88 SNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDC-TIEDVDTFRSIYREHCEAFLDA 146
N + ++ +P+FP ++ + + C + E VDT +Y+ HC+ LD
Sbjct: 254 KNEGGFTRKYSLSSKTGTLLPEFPS---AQHLVLDRCISKEKVDTLIMMYKTHCQCVLDN 310
Query: 147 IVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFY 206
+ +F I+ FW+ ++ E + +FC+ D + Y
Sbjct: 311 AINGNFEEIQHFLLHFWQGMPDHLLPLLENPVIID---IFCV------------CDSILY 355
Query: 207 QNLVEVLIPDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLS 264
+ L +VLIP + +L D + W E W N E K L ++ F
Sbjct: 356 KVLTDVLIPATMQEMPESLLADIRSFAKNW-EHWIVSSLENLPEDLTTKKLPIARRF--- 411
Query: 265 KCVPVQAFVRRVDF----------LFYQNLVEVLIPDV 292
V + R+ F LF Q++V ++ D+
Sbjct: 412 ----VSSLKRQTSFLDLAQIARPALFDQHIVNAMVADI 445
>gi|149067365|gb|EDM17098.1| similar to regulatory factor X 4 variant (predicted), isoform CRA_a
[Rattus norvegicus]
Length = 460
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 128/254 (50%), Gaps = 21/254 (8%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 212 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDAS----L 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD ++ +Q + + L
Sbjct: 317 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLSSITKQTLYTMEDSRDEHRRL 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 377 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASF 465
VIRD+TL SA SF
Sbjct: 437 RVIRDMTLHSAPSF 450
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKREVTKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +PDFP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 167 AYSPRSK----LG---TLLPDFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>gi|195997083|ref|XP_002108410.1| hypothetical protein TRIADDRAFT_51266 [Trichoplax adhaerens]
gi|190589186|gb|EDV29208.1| hypothetical protein TRIADDRAFT_51266 [Trichoplax adhaerens]
Length = 557
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 125/260 (48%), Gaps = 22/260 (8%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD +V + I+ + FW D + C P + D
Sbjct: 166 LLDTVVCGNLRQIQEIISHFWHDLPPQMTD---------------VLHCPPASDLICICD 210
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQG-CPQEMINIKVTAVGA 336
+ Y+++ +L+P L I SLT +IRNFA +E W+ + + G PQ +I+ K
Sbjct: 211 MILYKSIGHILVPGTLDAIAVSLTRAIRNFAHQLEDWIVSGLSGYAPQYLIDCKTNVAYT 270
Query: 337 FAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQ 396
F++ L R TSL HLAQAAR L ++ + M+ D VD V + W+ D + +
Sbjct: 271 FSKSLHRLTSLAHLAQAARNELGTASVLESMIADWEIVDEQRVIFETIWMYSHDKTDIMA 330
Query: 397 LESD-----FKLTLQQQNSLEEWANWLKNVVN-AVLKPFEGKPNFTKAARQFLLKWSFYS 450
+ FK L ++ ++EE+ +WL +VN V + KAA +F+L WSF S
Sbjct: 331 VAIGKNLHIFKDLLSKRAAIEEYISWLSAIVNDCVFSKSNDRKVIKKAAEEFILTWSFIS 390
Query: 451 SMVIRDLTLRSAASFGSFHL 470
S+VIRD TLRSA SF + L
Sbjct: 391 SLVIRDFTLRSAGSFDDYVL 410
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 73/183 (39%), Gaps = 28/183 (15%)
Query: 51 LSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAG-QTNSNPS-------PQSGNHNFLGD 102
L+ N + GK + + + + G G + Q N +PS P+S + +
Sbjct: 68 LTSANAASFGKIIRRIYPQVKNRRLGQRGQSKFNDQLNDDPSAEGLLVLPKSVIDDVVRS 127
Query: 103 GSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWRE 161
+P+FP DL+ LP+ + ++TF +YR HC LD +V + I+ +
Sbjct: 128 HDAMLPEFPNAGDLN---LPDLEIRDKIETFFILYRAHCHKLLDTVVCGNLRQIQEIISH 184
Query: 162 FWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDA 221
FW D + C P + D + Y+++ +L+P LDA
Sbjct: 185 FWHDLPPQMTD---------------VLHCPPASDLICICDMILYKSIGHILVPGT-LDA 228
Query: 222 IVT 224
I
Sbjct: 229 IAV 231
>gi|410950231|ref|XP_003981814.1| PREDICTED: DNA-binding protein RFX2 [Felis catus]
Length = 630
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 106/210 (50%), Gaps = 27/210 (12%)
Query: 29 GNSKYHYYGIRVKPDSPLNNI------------PLSDENGSPRGKKYKLVKTDSNSNQYG 76
GNSKYHYYGIR+KPDSPLN + PL + PR + + + +S +G
Sbjct: 266 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPLHQK---PRYRPAQKTDSLGDSGSHG 322
Query: 77 SEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIY 136
S H+T Q + QS +H + S+ P+FP DL L E T+ DV + +Y
Sbjct: 323 SL-HSTPEQAMAA---QSQHHQQFINVSHVFPEFPAPDLGSVLLQESITLHDVKALQLVY 378
Query: 137 REHCEAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCL 188
R HCEA LD +V L F +E LW FW S+ + D E L K KL L
Sbjct: 379 RRHCEATLDVVVHLQFHYMEKLWLSFWNSKAPSGDGPAPLPASDGEPEGAVLPKDKLVSL 438
Query: 189 SKCVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
KC P+ ++R D + YQ LVE+LIPD
Sbjct: 439 CKCEPILKWMRNCDHILYQALVEILIPDVL 468
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/50 (92%), Positives = 49/50 (98%)
Query: 451 SMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
SMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 529 SMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 578
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 53/99 (53%), Gaps = 8/99 (8%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A LD +V L F +E LW FW S+ + D E L K KL L KC
Sbjct: 383 EATLDVVVHLQFHYMEKLWLSFWNSKAPSGDGPAPLPASDGEPEGAVLPKDKLVSLCKCE 442
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRN 306
P+ ++R D + YQ LVE+LIPDVLRP+P L + R+
Sbjct: 443 PILKWMRNCDHILYQALVEILIPDVLRPVPSKLLAGGRS 481
>gi|260618471|gb|ACX47362.1| RFX6 [Mus musculus]
Length = 893
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 127/222 (57%), Gaps = 15/222 (6%)
Query: 280 FYQNLVEVLIPDVLRPIPGS----LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
F + L +VLIP ++ +P S L + IRNFAK E W+ ++++ P+ +I+ K+ +
Sbjct: 283 FEEVLTDVLIPATMQEMPESFLCSLLADIRNFAKNWEQWVVSSLENLPEALIDKKIPILR 342
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDA 391
F L+R TS HLAQ AR L + +N M++D+ +VD +++ QA S ++
Sbjct: 343 RFVSSLKRQTSFLHLAQIARPALFDQHVVNAMVSDIEKVDLNSIGSQALLTISNSTDTES 402
Query: 392 SLVQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLL 444
+ + +S + K L++ ++E + WL VV + + + K A+ FLL
Sbjct: 403 DIYSEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKMSKQNGRSLKKRAQDFLL 462
Query: 445 KWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
KWSF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 463 KWSFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 504
>gi|297276292|ref|XP_001111344.2| PREDICTED: MHC class II regulatory factor RFX1 [Macaca mulatta]
Length = 991
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 108/204 (52%), Gaps = 17/204 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDEN-----GSPRGKKYKLV---KTDSNSNQYGSEGH 80
GNSKYHYYG+R+K SPL + + D+ G P +K +L K + +N
Sbjct: 626 GNSKYHYYGLRIKASSPLLRL-MEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGQQ 684
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+ G S+ S Q + D S ++PDF E+DL LPE D+ F+ +YREHC
Sbjct: 685 PSTG--LSDISAQVQQYQQFLDASRSLPDFTELDLQGKVLPEGVGPGDIKAFQVLYREHC 742
Query: 141 EAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 194
EA +D +V L F+ +E+LW+ FWR SQ + E EK L K+ L LSK PV
Sbjct: 743 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPV 802
Query: 195 QAFVRRVDFLFYQNLVEVLIPDAF 218
+ + D + YQ LVE+LIPD
Sbjct: 803 LQWTKHCDNVLYQGLVEILIPDVL 826
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 81/126 (64%), Gaps = 6/126 (4%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR SQ + E EK L K+ L LSK PV
Sbjct: 743 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPV 802
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 803 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 862
Query: 330 KVTAVG 335
KV G
Sbjct: 863 KVRVQG 868
>gi|444511896|gb|ELV09970.1| Transcription factor RFX4 [Tupaia chinensis]
Length = 1159
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 132/274 (48%), Gaps = 47/274 (17%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 197 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 241
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK +
Sbjct: 242 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELI--- 298
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQIN-QMLTDLNRVDFHNVQEQASWVCQCDA----S 392
+S I QML D VD +++ +Q + +
Sbjct: 299 ----------------------HSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRK 336
Query: 393 LVQQLESDFKLTLQQQNSLEEWANWLKNVVN-AVLKPFEGKP-NFTKAARQFLLKWSFYS 450
L+ QL +F L++Q+ +E + WL +V+ V+K +P + K A+QFLL WS +
Sbjct: 337 LIIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRPGSLRKVAQQFLLMWSCFG 396
Query: 451 SMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
+ VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 397 TRVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 430
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 108 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 151
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 152 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 201
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 202 IRANFDEVQSFLLHFWQ 218
>gi|47222712|emb|CAG00146.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1034
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 128/228 (56%), Gaps = 18/228 (7%)
Query: 277 DFLFYQNLVEVLIPDVLRPIPGSLTSS-------IRNFAKGVESWLTNAMQGCPQEMINI 329
D + Y+ L +VLIP ++ +P S S+ IR+FAK E WL ++++ P+ +
Sbjct: 321 DSILYKVLTDVLIPATMQEMPESFVSAAPRLLADIRSFAKHWEHWLASSLENLPECLAAK 380
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SW 385
K+ F L+R TS HLAQ AR L + + M++D++ +D ++ Q +
Sbjct: 381 KLPIARHFVSSLKRQTSFLHLAQIARPALFDQAVVTSMVSDIDSIDLGSISSQPLLSMNA 440
Query: 386 VCQCDASLVQQLES-----DFKLTLQQQNSLEEWANWLKNVV-NAVLKPF-EGKPNFTKA 438
+ D + + +S + K L++ ++E + WL +V+ + V+KP + + K
Sbjct: 441 GGESDPDIYSEYDSITVFQELKELLRKNATVESFIEWLDSVLEHKVIKPGKQSGRSVKKR 500
Query: 439 ARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
A+ FLL+WSF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 501 AQDFLLRWSFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLALETQ 548
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 65/298 (21%), Positives = 110/298 (36%), Gaps = 75/298 (25%)
Query: 32 KYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNSNPS 91
+YHYYGI +K S + S + G R KL + +Y T
Sbjct: 183 RYHYYGIGIKESSAYYHSIYSGK-GLTRFSGSKLKNEGGFTRKYSLSSKT---------- 231
Query: 92 PQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLD 151
+PDFP + L + + + V+T +Y+ HC+ LD+ + ++
Sbjct: 232 ------------GTLLPDFP--NAQHLLLQGNISRDKVETLIMMYKTHCQCILDSAINVN 277
Query: 152 FS--------TIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDF 203
F I++ FW+ ++ E + +FC+ D
Sbjct: 278 FEELIHRLLFQIQNFLLHFWQGMPDHLLPLLENRVIV---DIFCV------------CDS 322
Query: 204 LFYQNLVEVLI-------PDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKY 254
+ Y+ L +VLI P++F+ A L D + W E W + N EC K
Sbjct: 323 ILYKVLTDVLIPATMQEMPESFVSAAPRLLADIRSFAKHW-EHWLASSLENLPECLAAKK 381
Query: 255 LSKSKLFCLSKCVPVQAFVRRVDF----------LFYQNLVEVLIPDVLRPIPGSLTS 302
L ++ F V + R+ F LF Q +V ++ D+ GS++S
Sbjct: 382 LPIARHF-------VSSLKRQTSFLHLAQIARPALFDQAVVTSMVSDIDSIDLGSISS 432
>gi|402226116|gb|EJU06176.1| hypothetical protein DACRYDRAFT_45233 [Dacryopinax sp. DJM-731 SS1]
Length = 715
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 136/285 (47%), Gaps = 29/285 (10%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
D+ LDA+ L F E R FW G + E ++ VQA + R
Sbjct: 277 DSLLDAVRQLRFDQFELNIRAFW----TGLGPQHREVVHVPT-----------VQALMAR 321
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
D L Y ++E L + P+P + ++ A +E L +A++G K+
Sbjct: 322 ADALVYDEILESLRAQIFMPLPPTAMQQMKQMADKMEKILLSAVEGYQANFYESKIELGA 381
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDAS-LV 394
F ++ R+ + +AQA R+VL N QI M T ++DF +V+ Q + VC C LV
Sbjct: 382 RFGHLVTRFLDMFQVAQALRSVLTNQKQILDMQTAWQQIDFDSVRNQTALVCNCRHEVLV 441
Query: 395 QQLESDFKLTL-------QQQNSLEEWA-NWLKNVVNAVLKPFEGKPNFTKAARQFLLKW 446
Q LE++F L + ++ EW + + ++ P E + AR L++W
Sbjct: 442 QILETEFPQLLANLYTAPEPVKTVTEWVDDTYRRIMQGDFGPIE-----SSQARSVLIRW 496
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALAT 491
F +S V+RDLT+RS +FG+F +++L D+++ + VAL+T
Sbjct: 497 GFVTSQVMRDLTIRSDPAFGAFQILKLFLDDWIALHVLRDVALST 541
>gi|149460242|ref|XP_001520466.1| PREDICTED: DNA-binding protein RFX6, partial [Ornithorhynchus
anatinus]
Length = 405
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 116/221 (52%), Gaps = 11/221 (4%)
Query: 277 DFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGA 336
D + Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P + K+
Sbjct: 95 DSILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPDTLSAKKLPIARR 154
Query: 337 FAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC------QCD 390
F L+R TS HLAQ AR L + +N M+ D+ +VD +++ QA QC+
Sbjct: 155 FVSSLKRQTSFLHLAQIARPALFDQHVVNSMVADIEKVDLNSIGSQALLTASSGADPQCE 214
Query: 391 ASLVQQLESDF---KLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLK 445
S F K L++ ++E + WL VV + + + K A+ FLLK
Sbjct: 215 VYTENDSISVFHELKDLLKKNATVESFIEWLDTVVEQKVIKTSKQTGRSLKKRAQDFLLK 274
Query: 446 WSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
WSF+ + V+ LTL +A+SF SF I ++ DEY+ +E Q
Sbjct: 275 WSFFGARVMHTLTLNNASSFASFQWISIVSDEYILLAMETQ 315
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 19/110 (17%)
Query: 107 IPDFPEIDLSEDCLPEDCTIED-VDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRS 165
+P+FP ++ + + C D VDT +Y+ HC+ LD + +F I+ FW+
Sbjct: 17 LPEFPS---TQHLIDQSCIATDKVDTLIMMYKTHCQCVLDNAINGNFDEIQHFLLHFWQG 73
Query: 166 QDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIP 215
++ E + +FC+ D + Y+ L +VLIP
Sbjct: 74 MPDHLLPLLENPIIVD---IFCV------------CDSILYKVLTDVLIP 108
>gi|242010692|ref|XP_002426094.1| rfx4, putative [Pediculus humanus corporis]
gi|212510127|gb|EEB13356.1| rfx4, putative [Pediculus humanus corporis]
Length = 498
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 115/224 (51%), Gaps = 8/224 (3%)
Query: 269 VQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMIN 328
V V D + Y+ + V +P VL+ +L IRNFA +E+W+ +A+ PQ +
Sbjct: 220 VVNMVGVCDSILYRTISSVFMPSVLKKCSDNLIQMIRNFADKLENWINSALTDVPQSLKT 279
Query: 329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQ 388
+K+ F L+R L L A VL N +N + D R++ + +QA +
Sbjct: 280 VKLKLGKRFCTTLKRQMILYQLTHTAEIVLNNCEMMNHINKDWKRINLEPITKQALLFTE 339
Query: 389 CDASLVQQLE------SDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPN--FTKAAR 440
++ ++ +F+ + +Q ++E++ + ++ +V+ + K A+
Sbjct: 340 GSNDHIETIQQINKYWKNFQELIGRQATIEDFTDTIETIVHRCIVEMSEKKQIPLRNVAK 399
Query: 441 QFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
F+L W S++ RD+T+ SAASFGSFHLI+ ++DEYM YLIE
Sbjct: 400 SFILLWHVIESLISRDMTIHSAASFGSFHLIQTMFDEYMHYLIE 443
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 33/138 (23%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G S+YHY GI +K SP + S K++ T S+G T + N+
Sbjct: 95 GQSQYHYCGIAIKDSSPYYDTAFS-----------KMIFT-------CSDGKKTLDKNNA 136
Query: 89 NP--SPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDA 146
S GN P+FP I E +P + E V +F +Y HC+ D
Sbjct: 137 KIFFSKNKGNVKIW-------PNFPNI--KEIPMPPHVSEEKVSSFIIMYHTHCQRIFDT 187
Query: 147 IV--TLD--FSTIESLWR 160
I+ TLD + +E W+
Sbjct: 188 IIRGTLDDAYQFLEHFWQ 205
>gi|198416506|ref|XP_002122865.1| PREDICTED: similar to Regulatory factor X domain-containing protein
1 [Ciona intestinalis]
Length = 648
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 120/226 (53%), Gaps = 6/226 (2%)
Query: 267 VPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEM 326
V + + D L +++L ++L+P + +RN K E W+ ++ GCP+++
Sbjct: 298 VVIIDLIALCDILLHESLTDLLLPAACNNMTEIELLEVRNVGKQWEGWVKASLVGCPEQL 357
Query: 327 INIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWV 386
K F Q L R TS +L++ RA++++ + ML D+ +D ++ QA +
Sbjct: 358 SVKKSLIAQQFGQSLVRQTSFVNLSRTVRAIMEDRATVTPMLRDIENIDLKSMGSQAFYA 417
Query: 387 C----QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVN-AVLKPF-EGKPNFTKAAR 440
D L +L + K L ++ +++ + WL NVV+ V+KP + + K A+
Sbjct: 418 NTESEDQDTDLNSELIKELKDLLNKRANVDMFVEWLDNVVDQKVIKPSKQNGRSMKKRAQ 477
Query: 441 QFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
FLLKWSF+ + V+ LT+ +A SF SFH +R+L DEY+ + +E Q
Sbjct: 478 DFLLKWSFFGARVMHTLTINNAVSFNSFHYLRMLMDEYILFAVETQ 523
>gi|45709612|gb|AAH67778.1| RFX3 protein [Homo sapiens]
Length = 413
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 84/143 (58%), Gaps = 9/143 (6%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T ED+ + +S+YREHCE
Sbjct: 305 TGTSVGQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFEDIKSLQSLYREHCE 362
Query: 142 AFLDAIVTLDFSTIESLWREFWR 164
A LD +V L FS IE LW+ FWR
Sbjct: 363 AILDVVVNLQFSLIEKLWQTFWR 385
>gi|26334223|dbj|BAC30829.1| unnamed protein product [Mus musculus]
Length = 388
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 84/143 (58%), Gaps = 9/143 (6%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 220 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 279
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T ED+ + +S+YREHCE
Sbjct: 280 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFEDIKSLQSLYREHCE 337
Query: 142 AFLDAIVTLDFSTIESLWREFWR 164
A LD +V L FS IE LW+ FWR
Sbjct: 338 AILDVVVNLQFSLIEKLWQTFWR 360
>gi|109944606|emb|CAI72671.1| regulatory factor X 3 [Oryctolagus cuniculus]
Length = 277
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 93/178 (52%), Gaps = 18/178 (10%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGI VKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 100 GNSKYHYYGICVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 159
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T ED+ + +S+YREHCE
Sbjct: 160 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFEDIKSLQSLYREHCE 217
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEEKYLSKSKLFCLSK 190
A LD +V L FS IE LW+ FWR D E E L K+KL L K
Sbjct: 218 AILDVVVNLQFSLIEKLWQTFWRYSPTTPADGTTITEPSNLSEIESRLPKAKLITLCK 275
>gi|58865916|ref|NP_001012172.1| regulatory factor X, 3 (influences HLA class II expression) [Rattus
norvegicus]
gi|55249810|gb|AAH85953.1| Regulatory factor X, 3 (influences HLA class II expression) [Rattus
norvegicus]
Length = 458
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 87/155 (56%), Gaps = 9/155 (5%)
Query: 17 PLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTD 69
P+N GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D
Sbjct: 219 PVNAASFGKLIRGNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVD 278
Query: 70 SNSNQYGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDV 129
++ + G T QS +H D S A+P+F E+++S LP+ T ED+
Sbjct: 279 GVADGFTGSGQQTGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEISS--LPDGTTFEDI 336
Query: 130 DTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWR 164
+ +S+YREHCEA LD +V L FS IE LW+ FWR
Sbjct: 337 KSLQSLYREHCEAILDVVVNLQFSLIEKLWQTFWR 371
>gi|393215664|gb|EJD01155.1| hypothetical protein FOMMEDRAFT_169330 [Fomitiporia mediterranea
MF3/22]
Length = 921
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 137/299 (45%), Gaps = 35/299 (11%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
+A LD++ F E R FW S +GD E + V + +
Sbjct: 499 NALLDSVRNYRFDQFELNLRSFWSSL---SGDHRE------------VVHAPAVAGLMAK 543
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
D L Y ++E+L +L PIP +S+R A +E L A++ + KV
Sbjct: 544 ADALVYNEILEILRLQMLSPIPPQALTSLRQLADKMEKILLLALENYGNTFVEPKVELGA 603
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC-DASLV 394
F ++ R+ + + QA VL N Q++ M +DF +V+ Q++ VC C LV
Sbjct: 604 RFGHLVLRFLDIFQVTQALSTVLTNQKQLSDMRRSWQSIDFESVRNQSALVCNCRHEDLV 663
Query: 395 QQLESDFKLTLQQQNSLEEWAN-------WLKNVVNAVLKPFEGKPNFTK--------AA 439
Q LE DF L NSL + A W NV ++ G PN T ++
Sbjct: 664 QLLEVDFVALL---NSLSKSAEPVGEVMAWADNVCERLMGGNRG-PNMTGGVEERSTISS 719
Query: 440 RQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAV 498
R L++W + +S ++RDLT+RS +FG+F +++L D+++ + VAL+T +V
Sbjct: 720 RSILIRWGYVTSQIMRDLTIRSDPAFGAFQILKLFLDDWIALNVLRSVALSTNSVAASV 778
>gi|390601231|gb|EIN10625.1| hypothetical protein PUNSTDRAFT_112444 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 883
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 135/288 (46%), Gaps = 20/288 (6%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
DA L++I F E R FW S + + L V + R
Sbjct: 465 DALLESIRLFRFDQFEMHVRTFWPSLQGVHRE---------------LVHAPAVAGLMNR 509
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
D + Y ++E+L +L PIP + +S+R A +E L A++ + KV
Sbjct: 510 ADAIVYDEILEILRSQMLSPIPPASLASLRQLADKMEKILLVALESYGSTFVEPKVELGA 569
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC-DASLV 394
F ++ R+ + + QA VL + Q+ +M ++VDF +V+ Q++ VC C LV
Sbjct: 570 RFGHLVLRFLDIYQVTQALNTVLTSQKQLAEMRRSWSKVDFESVRNQSALVCNCRHEDLV 629
Query: 395 QQLESDFKLTLQQ-QNSLE---EWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYS 450
LE++F L+ Q S E + W ++ G+ T ++R L++W + +
Sbjct: 630 HLLENEFVHLLENLQKSAEPVRDVMTWADKCCERLMGGGRGEERSTMSSRSVLIRWGYVT 689
Query: 451 SMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAV 498
S V+RDLT+RS +FG+F +++L D+++ + VAL+T +V
Sbjct: 690 SQVMRDLTIRSDPAFGAFQILKLFLDDWIAVNVLRSVALSTNSVAASV 737
>gi|321476524|gb|EFX87484.1| hypothetical protein DAPPUDRAFT_42744 [Daphnia pulex]
Length = 471
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 119/219 (54%), Gaps = 11/219 (5%)
Query: 277 DFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGA 336
D + Y+++ +L+ V+R +P +L IR FA ++SWL A++ P+ + +K+
Sbjct: 206 DSILYRSVCSILMSSVIRGLPENLIQMIRKFASELDSWLQAALEDLPENLRAVKIDLARH 265
Query: 337 FAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA-----SWVCQCDA 391
F MLRR +SLN L R L + + +L D R D H + + A ++ +
Sbjct: 266 FCHMLRRQSSLNQLFGTVRLALHDPQVNSVLLHDWQRQDLHAMTKSALQAVSNFHLGDHS 325
Query: 392 SLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEG----KP--NFTKAARQFLLK 445
++L +F+ L +Q LE + W++++V+ + G +P + + RQFLL
Sbjct: 326 QQFRKLGGEFERLLAEQAPLEAYTEWVESIVDRCVLQQRGHHRSRPASSLRHSIRQFLLV 385
Query: 446 WSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
W +S ++R+LT ++AA F +FHL+R++ D+Y YL+E
Sbjct: 386 WMAFSGRLLRELTAQTAAGFETFHLMRIMVDDYFLYLVE 424
>gi|390333445|ref|XP_003723712.1| PREDICTED: transcription factor RFX3-like [Strongylocentrotus
purpuratus]
Length = 856
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 110/201 (54%), Gaps = 9/201 (4%)
Query: 277 DFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGA 336
D Y +V VLIP L +P SL IR+F+ V + ++ P ++++ K+ A+
Sbjct: 371 DTYLYHTIVSVLIPGTLNTVPQSLLQGIRHFSHEVPQIKQSVLKSFPDQLLHSKMPAMKR 430
Query: 337 FAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQ-EQASWVCQCDASLVQ 395
F+++L+R TSL HLAQA+R+ L I QM D R H+ Q W L+
Sbjct: 431 FSRLLKRKTSLAHLAQASRSALAVDITITQMRLDWERRTEHDTACSQLIWTMPEMKGLIH 490
Query: 396 Q-----LESDFKLTLQQQNSLEEWANWLKNVVN-AVLKPF-EGKPNFTKAARQFLLKWSF 448
+ ++S FK L+ + ++E+ W++ V + V K + G ++ KA R F + WS+
Sbjct: 491 KDIRAHMDS-FKKLLESRATVEDHIKWVEEVRSFYVEKGYPRGSAHYEKAERAFFMGWSY 549
Query: 449 YSSMVIRDLTLRSAASFGSFH 469
S++IRD TLRSA SFGSFH
Sbjct: 550 VCSLIIRDQTLRSATSFGSFH 570
>gi|353243355|emb|CCA74906.1| hypothetical protein PIIN_08876 [Piriformospora indica DSM 11827]
Length = 970
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 131/288 (45%), Gaps = 20/288 (6%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
DA L++ L F E R FW GD E + V + +
Sbjct: 540 DALLESTRALRFDQFELHLRTFWARL---TGDHRE------------VVHAPAVAGLMAK 584
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
D L Y ++E L +L PIP +S+R A +E L A++ + KV
Sbjct: 585 ADALLYDEILETLRSQILAPIPTPALASLRGLADQMEKVLLLALENYGSTFVEPKVELGA 644
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC-DASLV 394
F ++ R+ + + QA VLQN Q+ M + +DF +V+ Q++ VC C L+
Sbjct: 645 RFGHLVLRFLDIYQVTQALATVLQNPKQLADMRRAWSEIDFESVRNQSALVCNCRHEDLI 704
Query: 395 QQLESDF-KLTLQQQNSLEEWAN---WLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYS 450
Q LE DF L Q S E + W + ++ + T ++R L++W + +
Sbjct: 705 QLLEVDFVALIDGLQRSAEPVRDVMLWADDCCERLMGSSRAEDRSTLSSRSVLIRWGYVT 764
Query: 451 SMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAV 498
S ++RDLT+RS +FG+F +++L D+++ + VAL+T +V
Sbjct: 765 SQIMRDLTIRSDPAFGAFQILKLFLDDWIALNVLRAVALSTNSVAASV 812
>gi|156379617|ref|XP_001631553.1| predicted protein [Nematostella vectensis]
gi|156218595|gb|EDO39490.1| predicted protein [Nematostella vectensis]
Length = 396
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 130/253 (51%), Gaps = 21/253 (8%)
Query: 219 LDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDF 278
LD +++ +F ++S FW+ + KS L C S V V A D
Sbjct: 152 LDTVISANFDGVQSFVCHFWQGMPIH-----------MKSVLQC-SVLVDVIAIC---DS 196
Query: 279 LFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFA 338
+ Y+ L++VLIP ++ +P SL IR FA + WL ++ P + KV F
Sbjct: 197 ILYKVLIDVLIPSSIQDLPDSLREEIREFAVNLLEWLNESLTDVPSTVHAAKVKVARTFG 256
Query: 339 QMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLE 398
L R S HLAQ AR+VL + +++M+ DL ++D+ + Q +++ + ++++
Sbjct: 257 NALTRQVSFVHLAQTARSVLLSYDSVSRMMDDLRKIDWKGIMSQITFITG-NMEFPEKIK 315
Query: 399 S---DFKLTLQQQNSLEEWANWLKNVVN-AVLKPF-EGKPNFTKAARQFLLKWSFYSSMV 453
+ +F+ L +Q LE + WL + V+ +LKP E F + + +FL WS +++ +
Sbjct: 316 TYIQEFENLLTKQAPLEAYTEWLDSTVDRCILKPCKENGAKFDEKSAKFLGLWSLFTTKL 375
Query: 454 IRDLTLRSAASFG 466
+ DLTLRSA SFG
Sbjct: 376 LEDLTLRSAPSFG 388
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 37/192 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI+V SP + S + G R K N + ++ + G + +
Sbjct: 59 GQSKYHYYGIQVSESSPYFHSGYSKQ-GLTRFSTMK----PKNEGEIATKSKFSLGGSKT 113
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIV 148
+P+FP + LP+ +++ V+TF +YR HC+ LD ++
Sbjct: 114 R---------------TLLPEFPNAQKLD--LPKGVSLQKVETFIMMYRTHCQRILDTVI 156
Query: 149 TLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQN 208
+ +F ++S FW+ + KS L C S V V A D + Y+
Sbjct: 157 SANFDGVQSFVCHFWQGMPIH-----------MKSVLQC-SVLVDVIAI---CDSILYKV 201
Query: 209 LVEVLIPDAFLD 220
L++VLIP + D
Sbjct: 202 LIDVLIPSSIQD 213
>gi|149038660|gb|EDL92949.1| regulatory factor X domain containing 1 (predicted), isoform CRA_b
[Rattus norvegicus]
Length = 520
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 114/201 (56%), Gaps = 11/201 (5%)
Query: 277 DFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGA 336
D + Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ +I+ K+ +
Sbjct: 314 DSILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALIDKKIPILRR 373
Query: 337 FAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDAS 392
F L+R TS HLAQ AR L + +N M++D+ +VD +++ QA S ++
Sbjct: 374 FVSSLKRQTSFLHLAQIARPALFDQHVVNAMVSDIEKVDLNSIGSQALLTISNSTDTESD 433
Query: 393 LVQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLK 445
+ + +S + K L++ ++E + WL VV + + + K A+ FLLK
Sbjct: 434 IYSEYDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKMSKQNGRSLKKRAQDFLLK 493
Query: 446 WSFYSSMVIRDLTLRSAASFG 466
WSF+ + V+ +LTL +A+SFG
Sbjct: 494 WSFFGARVMHNLTLNNASSFG 514
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 73/189 (38%), Gaps = 44/189 (23%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTT-AGQTN 87
G+SKYHYYGI +K S + + Y +G T +G
Sbjct: 181 GHSKYHYYGIGIKESSAYYH------------------------SVYSGKGLTRFSGSKL 216
Query: 88 SNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIED-VDTFRSIYREHCEAFLDA 146
N + ++ +P+FP ++ + C +D VDT +Y+ HC+ LD
Sbjct: 217 KNEGGFTRKYSLSSKTGTLLPEFPS---AQHLVYPGCIAKDKVDTLIMMYKTHCQCILDN 273
Query: 147 IVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFY 206
+ +F I+ FW+ ++ E + +FC+ D + Y
Sbjct: 274 AINGNFEEIQHFLLHFWQGMPDHLLPLLENPVIID---IFCV------------CDSILY 318
Query: 207 QNLVEVLIP 215
+ L +VLIP
Sbjct: 319 KVLTDVLIP 327
>gi|443683724|gb|ELT87881.1| hypothetical protein CAPTEDRAFT_108705, partial [Capitella teleta]
Length = 404
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 130/262 (49%), Gaps = 28/262 (10%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
+DA+V+ +F +++L FW+ ++ L S + C +PV D
Sbjct: 147 IIDAVVSANFYEVKNLLLHFWQGMPDHLSP-------LLDSSIIC--DVIPV------CD 191
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ YQ L++ +IP ++ IP SL + I+ FAK + W+ A++G P+ ++ K+T + F
Sbjct: 192 DILYQALLDTIIPSTIQDIPESLATEIKIFAKHLPGWMIVALEGTPEAVVRGKLTVLKPF 251
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNV------QEQASWVCQCDA 391
+ ++ S LAQ R VL S ++QM DL+RVD V Q + + + DA
Sbjct: 252 IKNIKGQLSFIQLAQTTRQVLMTSDTVSQMHKDLSRVDISKVCVEMGFQTNTTELQKADA 311
Query: 392 SLV-------QQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLL 444
SL Q + K L +++E+ +WL ++ + L +F A FLL
Sbjct: 312 SLFDHCAVCEQTAFASLKDLLSTHSTVEDITDWLDVLLESCLLSLSTDQSFQSKAACFLL 371
Query: 445 KWSFYSSMVIRDLTLRSAASFG 466
WS S+V+RDLTL SA SFG
Sbjct: 372 MWSSVGSVVVRDLTLCSAPSFG 393
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 79/192 (41%), Gaps = 41/192 (21%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI +K S + + G R K VKT+ +Y T
Sbjct: 59 GQSKYHYYGIGIKETSQYYQ-SVYNGKGLTRFSGAK-VKTEGAGRKYSLSSKT------- 109
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIV 148
+PDFP+ LPE+ + ++T +YR HC+ +DA+V
Sbjct: 110 ---------------GTLLPDFPDARFLN--LPENVPRDKMETLMLMYRTHCQRIIDAVV 152
Query: 149 TLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQN 208
+ +F +++L FW+ ++ L S + C +PV D + YQ
Sbjct: 153 SANFYEVKNLLLHFWQGMPDHLSP-------LLDSSIIC--DVIPV------CDDILYQA 197
Query: 209 LVEVLIPDAFLD 220
L++ +IP D
Sbjct: 198 LLDTIIPSTIQD 209
>gi|328860081|gb|EGG09188.1| hypothetical protein MELLADRAFT_47604 [Melampsora larici-populina
98AG31]
Length = 341
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 130/275 (47%), Gaps = 21/275 (7%)
Query: 217 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 276
+ LD++ + F E R FW +G + + + L L V R
Sbjct: 85 SLLDSVKSYRFDQFELHLRNFW------SGLDAPSRQSVGHPALMSL---------VYRA 129
Query: 277 DFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGA 336
D + Y +++ L L P+P +S+R A+ +E + A++ P + K+
Sbjct: 130 DAVLYDQILDYLQSQTLSPMPQQAFASLRQLAQSMEQVIIVALESYPANFVGPKIELAAR 189
Query: 337 FAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQ 396
F ++ R+ + LAQA + N + M+ + +DF V+ QA+ V C +
Sbjct: 190 FGHLIVRHLGICQLAQALSGIFANPQSLKDMVEAWDGIDFEAVRNQAALVTNCQHDTLGH 249
Query: 397 LESDFKLTLQQQN-SLEEWANWLKNVVNAVLKPFEGKPNFTK--AARQFLLKWSFYSSMV 453
DF+ + N +++ + + + + L+P P+ + + R L++W F SS +
Sbjct: 250 CFDDFRQVIGNPNVTIDNFIQFAECTYDRCLQP---NPDGERSLSPRSLLVRWCFVSSQL 306
Query: 454 IRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA 488
IRDLTLRSAASFGSF ++ L +DE++ + + +VA
Sbjct: 307 IRDLTLRSAASFGSFQIVNLFFDEWLGFKVLRKVA 341
>gi|26340118|dbj|BAC33722.1| unnamed protein product [Mus musculus]
gi|148673122|gb|EDL05069.1| regulatory factor X domain containing 1, isoform CRA_b [Mus
musculus]
Length = 524
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 132/260 (50%), Gaps = 26/260 (10%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 274 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVIID---IFCV------------CD 318
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ +I+ K+ + F
Sbjct: 319 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALIDKKIPILRRF 378
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ +VD +++ QA S ++ +
Sbjct: 379 VSSLKRQTSFLHLAQIARPALFDQHVVNAMVSDIEKVDLNSIGSQALLTISNSTDTESDI 438
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 439 YSEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKMSKQNGRSLKKRAQDFLLKW 498
Query: 447 SFYSSMVIRDLTLRSAASFG 466
SF+ + V+ +LTL +A+SFG
Sbjct: 499 SFFGARVMHNLTLNNASSFG 518
>gi|336373557|gb|EGO01895.1| hypothetical protein SERLA73DRAFT_85891 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386375|gb|EGO27521.1| hypothetical protein SERLADRAFT_360220 [Serpula lacrymans var.
lacrymans S7.9]
Length = 873
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 133/291 (45%), Gaps = 23/291 (7%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
DA LD++ + F E R FW N NG E + + + +
Sbjct: 462 DALLDSVRSFRFDQFEMNLRNFW---SNLNGTHRE------------VVHAPAIAGLMAK 506
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
D + Y ++E L +L PI + +S+R A +E L A++G + KV
Sbjct: 507 ADAIVYDEILEFLRSQMLSPIQTASLTSLRQLANKMEKVLLLALEGYGNTFVEPKVELGA 566
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC-DASLV 394
F ++ R+ + + QA VL N Q+ +M +VDF +V+ Q++ VC C LV
Sbjct: 567 RFGHLVLRFLDIYQVTQALNTVLTNQKQLAEMRRSWQKVDFESVRNQSALVCNCRHEDLV 626
Query: 395 QQLESDFKLTL----QQQNSLEEWANWLKNVVNAVLKPFEG---KPNFTKAARQFLLKWS 447
Q LE +F + + + E W ++ G + T ++R L++W
Sbjct: 627 QLLEVEFVSMMDSLSKSSEPVREVMAWADKCCERLMGQRVGNGPEDRGTMSSRSILIRWG 686
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAV 498
+ +S V+RDLT+RS +FG+F +++L D+++ + VAL+T +V
Sbjct: 687 YVTSQVMRDLTIRSDPAFGAFQIMKLFLDDWIAVNVLRSVALSTNSVAASV 737
>gi|409079915|gb|EKM80276.1| hypothetical protein AGABI1DRAFT_120308 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 844
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 131/292 (44%), Gaps = 24/292 (8%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
DA LD++ T F E R FW + N+ + + + +
Sbjct: 434 DALLDSMRTFRFDQFEMHLRSFWSNLAGNHREVVHAPA---------------IAGLMAK 478
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
D + Y ++E+L +L PIP + +S+R A +E L ++ G + KV
Sbjct: 479 ADAIVYDEILEILRSQMLSPIPAASLTSLRQLALKMEKILLASLDGYGNTFVEPKVELGA 538
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC-DASLV 394
F ++ R+ + + QA VL N Q+ M +VDF +V+ Q++ VC C LV
Sbjct: 539 RFGHLILRFLDIYQVTQALNTVLTNPKQLADMRRSWEKVDFESVRNQSALVCNCRHEELV 598
Query: 395 QQLESDFKLTL----QQQNSLEEWANWLKNVVNAVLKP--FEGKP--NFTKAARQFLLKW 446
Q LE +F L + + E W + ++ P ++R L++W
Sbjct: 599 QLLEVEFVALLDSLTKTSEPVREVMAWADKCCDRLMGSSRVHSTPEERGGMSSRSVLIRW 658
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAV 498
+ +S V+RDLT+RS +FG+F +++L D+++ + VAL+T +V
Sbjct: 659 GYVTSQVMRDLTIRSDPAFGAFQILKLFLDDWIAVNVLRSVALSTNSVAASV 710
>gi|426198318|gb|EKV48244.1| hypothetical protein AGABI2DRAFT_184602 [Agaricus bisporus var.
bisporus H97]
Length = 844
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 131/292 (44%), Gaps = 24/292 (8%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
DA LD++ T F E R FW + N+ + + + +
Sbjct: 434 DALLDSMRTFRFDQFEMHLRSFWSNLAGNHREVVHAPA---------------IAGLMAK 478
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
D + Y ++E+L +L PIP + +S+R A +E L ++ G + KV
Sbjct: 479 ADAIVYDEILEILRSQMLSPIPAASLTSLRQLALKMEKILLASLDGYGNTFVEPKVELGA 538
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC-DASLV 394
F ++ R+ + + QA VL N Q+ M +VDF +V+ Q++ VC C LV
Sbjct: 539 RFGHLILRFLDIYQVTQALNTVLTNPKQLADMRRSWEKVDFESVRNQSALVCNCRHEELV 598
Query: 395 QQLESDFKLTL----QQQNSLEEWANWLKNVVNAVLKP--FEGKP--NFTKAARQFLLKW 446
Q LE +F L + + E W + ++ P ++R L++W
Sbjct: 599 QLLEVEFVALLDSLTKTSEPVREVMAWADKCCDRLMGSSRVHSTPEERGGMSSRSVLIRW 658
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAV 498
+ +S V+RDLT+RS +FG+F +++L D+++ + VAL+T +V
Sbjct: 659 GYVTSQVMRDLTIRSDPAFGAFQILKLFLDDWIAVNVLRSVALSTNSVAASV 710
>gi|302696307|ref|XP_003037832.1| hypothetical protein SCHCODRAFT_71685 [Schizophyllum commune H4-8]
gi|300111529|gb|EFJ02930.1| hypothetical protein SCHCODRAFT_71685 [Schizophyllum commune H4-8]
Length = 898
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 132/289 (45%), Gaps = 21/289 (7%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
DA LD++ F E R FW + N+ + + + +
Sbjct: 444 DAILDSVRHFRFDQFEMTLRNFWMNLTGNHREVVHAPA---------------IAGLMAK 488
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
D + Y ++E+L +L PIP +S+R A +E L +A+ + KV
Sbjct: 489 ADAIVYDEILEILRSQMLTPIPSQALASLRQLAIKMEKILVSALDSYGNTFVEPKVELGA 548
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC-DASLV 394
F ++ R+ + + QA VL N Q+ +M +VDF +V+ Q++ VC C LV
Sbjct: 549 RFGHLILRFLDIYQVIQALNTVLTNPKQLGEMRRSWQKVDFDSVRNQSALVCNCRHEDLV 608
Query: 395 QQLESDFKLTL----QQQNSLEEWANWLKNVVNAVL-KPFEGKPNFTKAARQFLLKWSFY 449
Q LE DF + + ++E +W ++ G + ++R L++W +
Sbjct: 609 QLLEVDFVALMDTLAKTPEPVKEVMSWADKCCERLMGGRGAGDDRGSMSSRSVLIRWGYV 668
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAV 498
+S V+RDLT+RS +FG+F +++L D+++ + VAL+T +V
Sbjct: 669 TSQVMRDLTIRSDPAFGAFQILKLFLDDWISVNVLRTVALSTNSVAASV 717
>gi|449549740|gb|EMD40705.1| hypothetical protein CERSUDRAFT_149026 [Ceriporiopsis subvermispora
B]
Length = 872
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 133/289 (46%), Gaps = 21/289 (7%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
DA L++I T F E R FW S N+ + V + +
Sbjct: 469 DALLESIRTFRFDQFELHLRTFWSSLTGNHREVVHAPA---------------VAGLMAK 513
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
D + Y ++E L +L PI + + +R A +E L A++G + KV
Sbjct: 514 ADAMVYDEILEFLRSQMLSPIQPASLAGLRQLADKMEKILLVALEGYGNTFVEPKVELGA 573
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC-DASLV 394
F ++ R+ + + QA VL N Q+ M +VDF +V+ Q++ VC C LV
Sbjct: 574 RFGHLVLRFLDMYQVTQALSTVLTNQKQLLDMRRSWAKVDFESVRNQSALVCNCRHEDLV 633
Query: 395 QQLESDF-KLTLQQQNSLE---EWANWLKNVVNAVLKPFEGKPN-FTKAARQFLLKWSFY 449
Q LE +F +L Q S E + W ++ +P+ T ++R L++W +
Sbjct: 634 QLLEVEFVQLLDGLQKSTEPVRDVMAWADKCCERLMGGRGAEPDRATMSSRSVLIRWGYV 693
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAV 498
+S V+RDLT+RS +FG+F +++L D+++ + VAL+T +V
Sbjct: 694 TSQVMRDLTIRSDPAFGAFQILKLFLDDWIGLNVLRTVALSTNSVAASV 742
>gi|172087156|ref|XP_001913120.1| similar to RFX [Oikopleura dioica]
gi|18029231|gb|AAL56419.1|AF374375_1 similar to RFX [Oikopleura dioica]
Length = 149
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 77/124 (62%), Gaps = 1/124 (0%)
Query: 364 INQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVN 423
+ Q DL ++D + EQ SWV +C VQ + S L S ++W +L +N
Sbjct: 2 VQQKRADLEKIDIMKIHEQISWVTECPLETVQTIHSGMVGLLDTHASFDDWHVFLVKSIN 61
Query: 424 AVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLI 483
+ L P PN+T A++F++ WS+YSSMVIRDLTLRS +FGSFHLIR+L DE + ++I
Sbjct: 62 SCL-PERSHPNYTVKAKKFIMSWSYYSSMVIRDLTLRSVQTFGSFHLIRMLLDELVSHVI 120
Query: 484 EHQV 487
E ++
Sbjct: 121 EQKI 124
>gi|170091806|ref|XP_001877125.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648618|gb|EDR12861.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 856
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 132/293 (45%), Gaps = 25/293 (8%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
D L+++ + F E R FW S ++ + + + + +
Sbjct: 440 DVLLESVRSFRFDQFEMHLRTFWSSLTGHHRE---------------IVHAPAIAGLMAK 484
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
D + Y ++E+L +L PIP SS+R A +E L A+ + KV
Sbjct: 485 ADAIVYDEILEILRSQMLSPIPAVSLSSLRQLALKMEKILLVALDNYGNTFVEPKVELGA 544
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC-DASLV 394
F ++ R+ + + QA VL N Q+++M +VDF +V+ Q++ VC C LV
Sbjct: 545 RFGHLVLRFLDIYQVTQALNTVLTNQKQLSEMRRSWQKVDFESVRNQSALVCNCRHEDLV 604
Query: 395 QQLESDFKLTL----QQQNSLEEWANWLKNVVNAVL---KPFEGKP--NFTKAARQFLLK 445
Q LE +F L + + E W ++ + G P ++R L++
Sbjct: 605 QLLEVEFVSVLDSLAKSNEPVREVMTWADKCCERLMGGSRANHGGPEERNVMSSRSVLIR 664
Query: 446 WSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAV 498
W + +S V+RDLT+RS +FG+F +++L D+++ + VAL+T +V
Sbjct: 665 WGYVTSQVMRDLTIRSDPAFGAFQILKLFLDDWIAVNVLRSVALSTNSVAASV 717
>gi|299747654|ref|XP_001837175.2| hypothetical protein CC1G_00311 [Coprinopsis cinerea okayama7#130]
gi|298407620|gb|EAU84792.2| hypothetical protein CC1G_00311 [Coprinopsis cinerea okayama7#130]
Length = 853
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 131/293 (44%), Gaps = 25/293 (8%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
DA L++I T F E R FW + + + ++ + + +
Sbjct: 439 DALLESIRTFRFDQFEMNIRSFWSTLTGQHRE---------------IAHAPAIAGLMAK 483
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
D + Y ++E L +L PI S +S+R A +E L A++G + KV
Sbjct: 484 ADAIVYDEILEFLRLQMLSPISTSSLTSLRQLAIKMEKILLVALEGYGNTFVEPKVELGA 543
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC-DASLV 394
F ++ R+ + + QA VL N Q+ +M +VDF +V+ Q++ VC C LV
Sbjct: 544 RFGHLVLRFLDIYQVTQALNTVLTNQKQLAEMRRSWTKVDFESVRNQSALVCNCRHEDLV 603
Query: 395 QQLESDFKLTLQ----QQNSLEEWANWLKNVVNAVLKPFEG-----KPNFTKAARQFLLK 445
Q LE +F L+ + E W ++ + ++R L++
Sbjct: 604 QLLEVEFTALLETVAKSNEPVREVMAWADKCCERLMGGVRAAQVVQEERGVMSSRSVLIR 663
Query: 446 WSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAV 498
W + +S V+RDLT+RS +FG+F +++L D+++ + VAL+T +V
Sbjct: 664 WGYVTSQVMRDLTIRSDPAFGAFQILKLFLDDWIAVNVLRNVALSTNSVAASV 716
>gi|389747260|gb|EIM88439.1| hypothetical protein STEHIDRAFT_120609 [Stereum hirsutum FP-91666
SS1]
Length = 880
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 141/292 (48%), Gaps = 27/292 (9%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
D+ L+++ F E R FW N G+ E + + + +
Sbjct: 467 DSLLESVRFFRFDQFEMHVRTFW---SNLGGNHRE------------VVHAPAIAGLMAK 511
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
D + Y ++EVL +L IP + +S+R A +E L +++ + KV
Sbjct: 512 GDAIVYDEILEVLRSQLLSSIPSAALTSLRQLADKMEKILLVSLENYGNTFVEPKVELGA 571
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC-DASLV 394
F ++ R+ + + QA VL N Q+++M ++DF +V+ Q++ VC C LV
Sbjct: 572 RFGHLVLRFLDIYQVTQALNTVLTNQKQLSEMRRSWEKIDFESVRNQSALVCNCRHEDLV 631
Query: 395 QQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFE------GKPN--FTKAARQFLLKW 446
Q LE +F+ ++ SL + A +++V+ K E G P+ T ++R L++W
Sbjct: 632 QLLEVEFRSLME---SLTKSAEPVRDVMAWADKCCERLMGGHGGPDDRSTMSSRSILIRW 688
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAV 498
+ +S V+RDLT+RS +FG+F +++L D+++ + VAL+T +V
Sbjct: 689 GYVTSQVMRDLTIRSDPTFGAFQILKLFLDDWIALNVLRNVALSTTSVAASV 740
>gi|403170268|ref|XP_003329641.2| hypothetical protein PGTG_11391 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168644|gb|EFP85222.2| hypothetical protein PGTG_11391 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1108
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 128/268 (47%), Gaps = 19/268 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD++ + F E R FW S D+ + + C++ + + + + R D
Sbjct: 642 LLDSVKSYRFDQFELALRTFWTSMDSASRE--------------CVTHSL-MMSLIYRAD 686
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y +++ L L +P S+R A+ +E + A++ P + K+ F
Sbjct: 687 AVVYDEILDYLHSQTLNQMPQQAFGSLRQLAQNMEQVIIAALENFPSTFVGPKIELAARF 746
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQL 397
++ R + LAQA + N + M + +DF V+ QA+ V C ++
Sbjct: 747 GHLVVRNLGICQLAQALSGIFSNPANLKDMAEAWDGIDFEAVRNQAALVTNCQHEILGGC 806
Query: 398 ESDFKLTLQQQN-SLEEWANWLKNVVNAVLKP-FEGKPNFTKAARQFLLKWSFYSSMVIR 455
+F+ L + +++ + ++++ L+P +G+ + R L++W F SS +IR
Sbjct: 807 FDEFRAILNNPHVTIDHFISFVEATYKRCLQPSADGERALSP--RSLLVRWCFVSSQLIR 864
Query: 456 DLTLRSAASFGSFHLIRLLYDEYMFYLI 483
DLTLRSA+SFGSF ++ L +DE++ + +
Sbjct: 865 DLTLRSASSFGSFQIVNLFFDEWLGFKV 892
>gi|403415791|emb|CCM02491.1| predicted protein [Fibroporia radiculosa]
Length = 885
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 129/290 (44%), Gaps = 22/290 (7%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
D LD I + E R FW + N+ + + + +
Sbjct: 473 DGLLDCIRSYRVDQFEFHIRSFWSNLSGNHREVVHAPA---------------IAGLMTK 517
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
D + Y ++E+L +L I + + +R A +E L +++G + KV
Sbjct: 518 ADAIVYDEILELLRSQMLSTISPAFLTGLRQLADKMEKILLGSLEGYGNTFVEPKVELGA 577
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC-DASLV 394
F ++ R+ + + QA AVL N Q+N M +VDF +V+ Q++ VC C LV
Sbjct: 578 RFGHLVLRFLDIYQVTQALTAVLTNPKQLNDMRRSWQKVDFESVRNQSALVCNCRHEDLV 637
Query: 395 QQLESDFKLTL----QQQNSLEEWANWLKNVVNAVLKPFEGKP--NFTKAARQFLLKWSF 448
Q LE +F L + + + + W ++ P T ++R L++W +
Sbjct: 638 QLLEVEFVSLLDGLVKSGDPVRDVMTWADKCCEKLMIARGVGPEDRSTMSSRSVLIRWGY 697
Query: 449 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAV 498
+S VIRDLT+RS +FG+F +++L D+++ + VAL+T +V
Sbjct: 698 VTSQVIRDLTIRSDPAFGAFQILKLFLDDWIALNVLRSVALSTNSVAASV 747
>gi|156403075|ref|XP_001639915.1| predicted protein [Nematostella vectensis]
gi|156227046|gb|EDO47852.1| predicted protein [Nematostella vectensis]
Length = 406
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 110/204 (53%), Gaps = 10/204 (4%)
Query: 279 LFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFA 338
+ Y+ L++VL+P ++ +P L + IR+FA+ +E W+ +A + P+ + K+ V FA
Sbjct: 195 ILYKVLMDVLLPSSMQDVPEGLLADIRSFARHLEVWVASATEELPEYVKLAKLQIVRRFA 254
Query: 339 QMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASW---VCQCDASLVQ 395
Q +RR TS HLAQ AR VL ++ + QM+ DL++VD + Q + + D L +
Sbjct: 255 QSIRRQTSFLHLAQTARPVLNSAELLEQMICDLDKVDNSSAGSQTLYDKTENETDEGLDR 314
Query: 396 QLE-----SDFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKWSF 448
+ E +F+ L Q+ +E + WL V + E F A++FLL+WSF
Sbjct: 315 ECEHVVFMEEFRELLANQSCVESYVEWLDKTVEQKVIQSCVESGLEFKNRAQEFLLRWSF 374
Query: 449 YSSMVIRDLTLRSAASFGSFHLIR 472
+ ++ LTL +++ FG L R
Sbjct: 375 LGARLMHSLTLNASSCFGMSALPR 398
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 28/138 (20%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR--GKKYKLVKTDSNSNQYGSEGHTTAGQT 86
G+SKYHYYGI +K S + S + G R G K K N + + ++ + +T
Sbjct: 59 GHSKYHYYGIGIKESSAYYHSVYSGK-GLTRFSGSKAK------NEGNFAARKYSLSSKT 111
Query: 87 NSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDA 146
+ +PDFP L E LP+ + E V+TF +Y+ HC+ LD
Sbjct: 112 GT-----------------LLPDFPNPQLLE--LPQGISQEKVETFVIMYKTHCQCILDT 152
Query: 147 IVTLDFSTIESLWREFWR 164
+ +F I++ FW+
Sbjct: 153 AINANFDEIKNFLLHFWQ 170
>gi|392586781|gb|EIW76116.1| hypothetical protein CONPUDRAFT_84804 [Coniophora puteana
RWD-64-598 SS2]
Length = 855
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 130/290 (44%), Gaps = 22/290 (7%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
DA LD++ + E R FW S N+ + + + + R
Sbjct: 442 DALLDSVRSFRVDQFEMHLRTFWSSLTGNHRE---------------IVHAPAIAGLMAR 486
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
D + Y ++E L +L I S + +R A +E L A++G KV
Sbjct: 487 ADAILYDEILEFLRSQMLSIISTSALNGLRQLANKMEKILLFALEGYGNTFCEPKVELGA 546
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC-DASLV 394
F ++ R+ + + QA VL N Q+ +M +VDF +V+ Q++ VC C L+
Sbjct: 547 RFGHLVLRFLDIYQVTQALNTVLTNPKQLAEMRRSWQKVDFESVRNQSALVCNCRHEDLI 606
Query: 395 QQLESDFKLTL----QQQNSLEEWANWLKNVVNAVL-KPFEGK-PNFTKAARQFLLKWSF 448
Q LE +F L + + E W ++ + F G T ++R L++W +
Sbjct: 607 QLLEVEFVSMLDNLTKSSEPVREVMTWADKCCERLMGQRFGGNDERSTMSSRSVLIRWGY 666
Query: 449 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAV 498
+S V+RDLT+RS +FG+F +++L D+++ + VAL+T +V
Sbjct: 667 VTSQVMRDLTIRSDPAFGAFQIMKLFLDDWIAVNVLRSVALSTNSVAASV 716
>gi|393246274|gb|EJD53783.1| hypothetical protein AURDEDRAFT_110534 [Auricularia delicata
TFB-10046 SS5]
Length = 820
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 133/293 (45%), Gaps = 25/293 (8%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
D LD+I + F E R FW+ N G+ E + + + +
Sbjct: 426 DQLLDSIRSFRFDQFEMHLRTFWQ---NLTGEYRE------------VVHAPAIAGLMAK 470
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
D L Y ++E L +L IP + +S+R A +E L A++ + KV
Sbjct: 471 ADALLYDEILETLRSQMLTSIPPAALTSLRQLADKMEKILMVALENYGNTFVEPKVELGA 530
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC-DASLV 394
F ++ R+ + + QA VL N Q+ +M + +DF +V+ Q++ VC C LV
Sbjct: 531 RFGHLVLRFLDIFQVTQALHTVLTNPKQVQEMRRSWSMIDFDSVRNQSALVCNCRQEDLV 590
Query: 395 QQLESDFKLTLQQQNSLEE-------WANWLKNVVNAVLKPFEG--KPNFTKAARQFLLK 445
Q LE +F L + E WA+ + A G + T ++R L++
Sbjct: 591 QLLEINFVAMLDGVGASVEPVRDVMAWADECYERLMANRGSLNGGAEDRSTMSSRSVLIR 650
Query: 446 WSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAV 498
W + +S ++RDLT+RS +FG+F +++L D+++ + VAL+T +V
Sbjct: 651 WGYVTSQIMRDLTIRSDPTFGAFQILKLFLDDWIALNVLRTVALSTNSVAASV 703
>gi|167518113|ref|XP_001743397.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778496|gb|EDQ92111.1| predicted protein [Monosiga brevicollis MX1]
Length = 994
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 131/273 (47%), Gaps = 19/273 (6%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
L A V + + L+ EFW + +YL F L V + D
Sbjct: 520 ILTAAVEGSYQNVHELYTEFW-------ARLPSQLQYL-----FSLGHVVDC---ICACD 564
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
Y ++ +I ++L P+ +R A SW+ + + ++ +V F
Sbjct: 565 NTLYTTILSEVISNILTPLSSDDIRHLRFLASHWISWVEQSAAYMSRAALSKRVETARVF 624
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASL--VQ 395
+ + R TSLNH+AQAA V T +QM TD +R+DF + Q S +C + + +
Sbjct: 625 VKAIERQTSLNHVAQAAITVFNTDTITDQMRTDWSRLDFEAIDMQVS-MCLTRSIMHNIH 683
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIR 455
+ F L ++ LE + W ++ + G T+A R F++ +++Y+S++ R
Sbjct: 684 RARDVFAEMLWRRTPLESYIQWFSKLLENCVGVKNGDLYQTRAKR-FIMIFNYYTSLLTR 742
Query: 456 DLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA 488
DL R+A+SF SFHL++L++ EY+ +L+E ++A
Sbjct: 743 DLRRRNASSFSSFHLVQLVFGEYLTFLVERRLA 775
>gi|409049586|gb|EKM59063.1| hypothetical protein PHACADRAFT_25186 [Phanerochaete carnosa
HHB-10118-sp]
Length = 881
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 142/321 (44%), Gaps = 31/321 (9%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
DA L++I T F E R FW S + + V + +
Sbjct: 476 DALLESIRTYRFDQFEMHVRTFWSSLTGAHREVVHAPA---------------VAGLMAK 520
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
D + Y ++E L +L PI + +R A +E L A++ + KV
Sbjct: 521 ADAIVYDEVLEFLRSQMLSPISATTLGGLRQLADKMEKILLVALESYGNTFVEPKVELGA 580
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC-DASLV 394
F ++ R+ + + QA VL N Q+ +M ++DF +V+ Q++ VC C L
Sbjct: 581 RFGHLVLRFLDMYQVTQALSTVLTNPKQLVEMKKSWQKIDFDSVRNQSALVCNCRHEELS 640
Query: 395 QQLESDFKLTL----QQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYS 450
LE +F L + + + + W + ++ G+ T ++R L++W + +
Sbjct: 641 HLLEVEFVNLLDGMSKSTDPVRDVMAWADKCCDKLMG-GRGEERVTMSSRSVLIRWGYVT 699
Query: 451 SMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKES-----N 505
S V+RDLT+RS +FG+F +++L D+++ + VAL+T +V + +
Sbjct: 700 SQVMRDLTIRSDPAFGAFQILKLFLDDWIALNVLRNVALSTNSVAASVEPMMQQQFFTLS 759
Query: 506 PV---ESSQNPMD--NGLYAH 521
P+ ES NP+D G+ AH
Sbjct: 760 PMAGQESFGNPLDVRPGMMAH 780
>gi|326426667|gb|EGD72237.1| hypothetical protein PTSG_00258 [Salpingoeca sp. ATCC 50818]
Length = 1207
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 104/210 (49%), Gaps = 5/210 (2%)
Query: 279 LFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGC--PQEMINIKVTAVGA 336
+ + L L+P+VL P+ IR FA + L + P + + A
Sbjct: 754 VLFDALFHGLVPNVLAPMSADAIRDIRVFAHTWKEQLNKLDEAATLPPHFRKLFMRASTM 813
Query: 337 FAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDA--SLV 394
A L R TSLNH+AQA VLQ+ +M DL+R+DF V+ + +C+ +
Sbjct: 814 LADGLLRQTSLNHIAQATFGVLQDGNMYTKMHRDLSRIDFSAVEAHVNLMCKNGPPDGVR 873
Query: 395 QQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVI 454
Q S +L +++ A W +++ + P + + A R L W+ YSS+ +
Sbjct: 874 QARRSLVQLFAGPAVTVDALATWFCRLMDKCIPP-PARGSGHAAGRHLYLVWNLYSSLCL 932
Query: 455 RDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
R+L +R+AASF SFHL++L DEY +L+E
Sbjct: 933 RELRIRNAASFSSFHLVKLFLDEYALFLLE 962
>gi|395328868|gb|EJF61258.1| hypothetical protein DICSQDRAFT_106385 [Dichomitus squalens
LYAD-421 SS1]
Length = 876
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 130/290 (44%), Gaps = 22/290 (7%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
DA L+++ F E R FW S + + V + +
Sbjct: 466 DALLESVRAFRFDQFEMHLRTFWSSLTGAHREVVHAPA---------------VAGLMAK 510
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
D + Y ++E+L +L PI + + +R A +E L A+ + KV
Sbjct: 511 ADAIVYDEILEMLRSQMLSPIAPASLAGLRQLADKMEKILLVALDSYGNTFVEPKVELGA 570
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC-DASLV 394
F ++ R+ + + QA VL N Q+ +M ++DF +V+ Q++ VC C LV
Sbjct: 571 RFGHLVLRFLDIYQVTQALNTVLTNQKQLLEMRRSWQKIDFESVRNQSALVCNCRHEDLV 630
Query: 395 QQLESDFKLTLQ----QQNSLEEWANWLKNVVNAVLKPFEG--KPNFTKAARQFLLKWSF 448
Q LE +F L+ Q+ + + W ++ G + T ++R L++W +
Sbjct: 631 QLLEGEFVQVLEGLSKSQDPVRDVMAWADKCCERLMGGRGGGVEERTTMSSRSVLIRWGY 690
Query: 449 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAV 498
+S V+RDLT+RS +FG+F +++L D+++ + VAL+T +V
Sbjct: 691 VTSQVMRDLTIRSDPAFGAFQILKLFLDDWIALNVLRNVALSTNSVAASV 740
>gi|392568757|gb|EIW61931.1| hypothetical protein TRAVEDRAFT_70167 [Trametes versicolor
FP-101664 SS1]
Length = 873
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 130/290 (44%), Gaps = 22/290 (7%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
DA L++I F E R FW S + + V + +
Sbjct: 464 DALLESIRGYRFDQFELHLRSFWSSLTGAHREVVHAPA---------------VAGLMAK 508
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
D + Y ++E+L +L PI + + +R A +E L A+ + KV
Sbjct: 509 ADAIVYDEILEMLRSQMLSPISPASLAGLRQLADKMEKILLVALDSYGNTFVEPKVELGA 568
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC-DASLV 394
F ++ R+ + + QA VL N Q+ +M ++DF +V+ Q++ VC C LV
Sbjct: 569 RFGHLVLRFLDIYQVTQALNTVLTNQKQLLEMRRSWAKIDFESVRNQSALVCNCRHEDLV 628
Query: 395 QQLESDFKLTL----QQQNSLEEWANWLKNVVNAVL--KPFEGKPNFTKAARQFLLKWSF 448
Q LE +F L + Q+ + + W ++ + + T ++R L++W +
Sbjct: 629 QLLEGEFVQVLDGLSKSQDPVRDVMAWADKCCERLMGGRGGGAEERTTMSSRSVLIRWGY 688
Query: 449 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAV 498
+S V+RDLT+RS +FG+F +++L D+++ + VAL+T +V
Sbjct: 689 VTSQVMRDLTIRSDPAFGAFQILKLFLDDWIALNVLRNVALSTNSVAASV 738
>gi|224586779|ref|NP_001139132.1| DNA-binding protein RFX8 [Mus musculus]
gi|300681095|sp|D3YU81.1|RFX8_MOUSE RecName: Full=DNA-binding protein RFX8; AltName: Full=Regulatory
factor X 8
Length = 596
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 126/268 (47%), Gaps = 24/268 (8%)
Query: 226 DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLV 285
+ +E L FW+S+ + L V+ + D Y+ L
Sbjct: 194 ELEKVEDLITSFWKSRQQDT---------------VMLMSLPDVRQLLGCYDMQLYKGLE 238
Query: 286 EVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYT 345
++L+PD L + S+R F+K + WL A++G P + K+ V F + LRR T
Sbjct: 239 DMLLPDFLEDVSIQYLKSVRLFSKRFKLWLLGALEGFPAILQISKLKEVTGFVKRLRRKT 298
Query: 346 SLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLT- 404
L+++A+ + VL+NS +I + +DL + + + V + D+ ++ ES ++
Sbjct: 299 YLSNMAKTMKMVLKNSRRIGLLKSDLRAIIREGTLDISKKVLEGDSDHEEEPESHTEMKC 358
Query: 405 -------LQQQNSLEEWANWL-KNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRD 456
L+ L E N + N+ V +P + K +F K A F LKW+F + V +
Sbjct: 359 LGCLISLLETSTDLAELLNCVSSNLQVLVFQPSKNKEDFIKLAASFQLKWNFLLTAVSKA 418
Query: 457 LTLRSAASFGSFHLIRLLYDEYMFYLIE 484
+TL SFG++HL LL EY+ +++E
Sbjct: 419 MTLSHRDSFGAWHLFHLLLLEYVIHILE 446
>gi|392350730|ref|XP_576547.4| PREDICTED: DNA-binding protein RFX8 [Rattus norvegicus]
Length = 581
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 111/217 (51%), Gaps = 9/217 (4%)
Query: 277 DFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGA 336
D Y+ L + L+PD L + S+R F+K + WL A++G P + K+ V
Sbjct: 214 DMQLYKGLEDTLLPDFLEDVSIQYLKSVRLFSKRFKLWLLGALEGFPAILQISKLKEVTG 273
Query: 337 FAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQ 396
F + LRR T L+++A+ + VL+NS ++ + +DL + + + V + D+ ++
Sbjct: 274 FVKRLRRKTYLSNMAKTMKMVLKNSRRVGLLKSDLRAIIREGTLDISKKVLEGDSGHEEE 333
Query: 397 LESDFKLT--------LQQQNSLEEWANWLKNVVNA-VLKPFEGKPNFTKAARQFLLKWS 447
ES ++ L+ L E N + + + A V +P + K F K A F LKW+
Sbjct: 334 PESHTEMKCLGCLISLLETSTDLAELLNCVSSNLQALVFQPSKSKEEFIKLAASFQLKWN 393
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
F + V + +TL SFG++HL LL EY+ +++E
Sbjct: 394 FLLTAVSKAMTLSHRDSFGAWHLFHLLLLEYVIHILE 430
>gi|334347011|ref|XP_003341879.1| PREDICTED: DNA-binding protein RFX8 [Monodelphis domestica]
Length = 569
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 143/297 (48%), Gaps = 27/297 (9%)
Query: 230 IESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLI 289
+E L FWRS ++ ++S + L KC Q Y+ + ++L+
Sbjct: 176 VEDLLAFFWRSLQHDTV------MFMSLPDVCQLFKCYDAQ---------LYKEIEDILL 220
Query: 290 PDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNH 349
D L + S+R F+K + WL NA++G P + K+ V F + LRR T L++
Sbjct: 221 HDFLEDVSIQYLKSVRLFSKKFKLWLLNALEGFPPLLRISKIKEVTVFVKRLRRKTYLSN 280
Query: 350 LAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLT----- 404
+A+ R VL N+ ++N + +DL+ + + + Q + + +LES+ +L
Sbjct: 281 MAKTMRMVLNNNRRVNILKSDLHAIVNQGALDIPRKLLQNNFRSMDELESNMELKCLNNL 340
Query: 405 ---LQQQNSLEEWANWLKNVVNA-VLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLR 460
L + + N + + + A V +P K F + A F L+W+F + V + +TL
Sbjct: 341 ISLLGTSTDVSVFLNCVSSNLQAFVFQPSRSKEEFIRLAASFQLRWNFLLTSVSKAMTLC 400
Query: 461 SAASFGSFHLIRLLYDEYMFYLIEHQVALATGE---TPIAVIGSKESNPVESSQNPM 514
SFGS+HL LL EY+ ++++ + E + + + +++P++S+Q P+
Sbjct: 401 HTDSFGSWHLFNLLLLEYVIHILQSCIEDEEEEEDGSNLKEMQPNDTSPLQSTQEPL 457
>gi|109487021|ref|XP_001058869.1| PREDICTED: DNA-binding protein RFX8 [Rattus norvegicus]
Length = 597
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 111/217 (51%), Gaps = 9/217 (4%)
Query: 277 DFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGA 336
D Y+ L + L+PD L + S+R F+K + WL A++G P + K+ V
Sbjct: 230 DMQLYKGLEDTLLPDFLEDVSIQYLKSVRLFSKRFKLWLLGALEGFPAILQISKLKEVTG 289
Query: 337 FAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQ 396
F + LRR T L+++A+ + VL+NS ++ + +DL + + + V + D+ ++
Sbjct: 290 FVKRLRRKTYLSNMAKTMKMVLKNSRRVGLLKSDLRAIIREGTLDISKKVLEGDSGHEEE 349
Query: 397 LESDFKLT--------LQQQNSLEEWANWLKNVVNA-VLKPFEGKPNFTKAARQFLLKWS 447
ES ++ L+ L E N + + + A V +P + K F K A F LKW+
Sbjct: 350 PESHTEMKCLGCLISLLETSTDLAELLNCVSSNLQALVFQPSKSKEEFIKLAASFQLKWN 409
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
F + V + +TL SFG++HL LL EY+ +++E
Sbjct: 410 FLLTAVSKAMTLSHRDSFGAWHLFHLLLLEYVIHILE 446
>gi|3702293|gb|AAC62839.1| RFX2_HUMAN, [AA 620-723] [Homo sapiens]
Length = 104
Score = 100 bits (250), Expect = 2e-18, Method: Composition-based stats.
Identities = 47/51 (92%), Positives = 50/51 (98%)
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 1 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 51
>gi|358338223|dbj|GAA56556.1| regulatory factor X 1/2/3 [Clonorchis sinensis]
Length = 1268
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 92/168 (54%), Gaps = 3/168 (1%)
Query: 222 IVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFY 281
I+ L + + W++FWRS + G LSK ++ L + V F+ D Y
Sbjct: 582 ILNLRIEGMRTCWQQFWRSAE---GQSTTCSSQLSKEQMITLCEDNRVCHFLELADRTLY 638
Query: 282 QNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQML 341
Q+L+E++I D L+ + ++ IR K +E +L +A++ P + N K+T + F + L
Sbjct: 639 QSLLELIINDSLKAMSMNMIHGIRTLIKLMEPYLRSAIRQFPANLANAKLTTLSGFTKGL 698
Query: 342 RRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
RR L+HL+QA V+++ ++ QM+ D+ ++D +++ Q SW +C
Sbjct: 699 RRALGLSHLSQAVLTVIKDPDRMRQMVHDITKLDLVSIEAQGSWASEC 746
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 75/139 (53%), Gaps = 6/139 (4%)
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMV 453
+++L ++ L + +L W +WL V+ L AAR +L W++YSS++
Sbjct: 852 MKELHAELCTLLTNRAALPVWTSWLDRTVSRTLADQVTGTKRASAARHLMLVWTYYSSLL 911
Query: 454 IRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAV---IGSKESNPVESS 510
+R+LTLRSAASF S HL+R+ DEY+ Y +E + + P ++ I + + P++ +
Sbjct: 912 MRELTLRSAASFSSCHLLRMWCDEYLSYRLEQVASSPSEGLPKSINQGISADQPEPLDDT 971
Query: 511 QNP---MDNGLYAHGQNNI 526
M +GL A G N +
Sbjct: 972 TYASGFMVDGLVADGANTL 990
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Query: 112 EIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNG 171
E DL P T + V F +Y HCE I+ L + + W++FWRS + G
Sbjct: 548 ETDLRNTTHPV-VTSKTVAQFVKLYEAHCEKIYSCILNLRIEGMRTCWQQFWRSAE---G 603
Query: 172 DECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
LSK ++ L + V F+ D YQ+L+E++I D+
Sbjct: 604 QSTTCSSQLSKEQMITLCEDNRVCHFLELADRTLYQSLLELIINDSL 650
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
GNSKYHYYGIR+K S LN + N S + K+ + G T G ++
Sbjct: 285 GNSKYHYYGIRMKSTSSLNQVTGETRNQSGQKKE---------GSHSGGRACPTTGMPSA 335
Query: 89 NPSPQSGNHNFLG 101
P N LG
Sbjct: 336 KPEEYKSGTNSLG 348
Score = 38.9 bits (89), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIP--LSDENGGNSKYHYYGIRVKPDSPL 46
GNSKYHYYGIR+K S LN + +++G + + G R P + +
Sbjct: 285 GNSKYHYYGIRMKSTSSLNQVTGETRNQSGQKKEGSHSGGRACPTTGM 332
>gi|390358354|ref|XP_790884.3| PREDICTED: DNA-binding protein RFX6-like [Strongylocentrotus
purpuratus]
Length = 632
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 86/141 (60%), Gaps = 7/141 (4%)
Query: 352 QAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC---QCDASLVQQLESDFKLTLQQQ 408
Q AR VL + ++QM+ DL +VD ++ A + D+ L + +DFK L++Q
Sbjct: 62 QTARPVLFDQQLVDQMIEDLEKVDLCSIGSHAMLSVSQDETDSELNTEFLNDFKELLKKQ 121
Query: 409 NSLEEWANWLKNVVNA-VLKPFE--GKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASF 465
++E + WL VV + V+KP + G+ +F K A+ FLLKWSF+ + V+ LT+ +A SF
Sbjct: 122 ATVEAFTEWLDQVVESKVIKPSKQNGR-SFKKRAQDFLLKWSFFGARVMHSLTINNAQSF 180
Query: 466 GSFHLIRLLYDEYMFYLIEHQ 486
SFHLIR+L DEY+ +E Q
Sbjct: 181 ASFHLIRMLLDEYILLAVESQ 201
>gi|354475283|ref|XP_003499859.1| PREDICTED: DNA-binding protein RFX8, partial [Cricetulus griseus]
Length = 588
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 111/220 (50%), Gaps = 9/220 (4%)
Query: 277 DFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGA 336
D ++ L + L+PD L + S+R F+K + WL +A++G P + K+ V
Sbjct: 221 DMQLFKGLEDALLPDFLEDVSIQYLKSVRLFSKRFKLWLLSALEGFPAILQISKLKEVTG 280
Query: 337 FAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQ 396
F + LRR T L+++A+ + VL+NS ++ + +DL + + + V D+ +
Sbjct: 281 FVKRLRRKTYLSNMAKTMKMVLKNSRRVGLLKSDLRAIISEGTLDISKKVLAGDSGHEED 340
Query: 397 LESDFKLT--------LQQQNSLEEWANWL-KNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
LES ++ L+ L E N + N+ V +P + K F K A F L+W+
Sbjct: 341 LESHTEMKCLGCLISLLETSTDLAELLNCVSSNLQVLVFQPSKTKEEFVKLAASFQLRWN 400
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQV 487
F + V + +TL SFG++HL LL EY+ +++E V
Sbjct: 401 FLLTAVSKAMTLSHRDSFGAWHLFHLLLLEYVIHILESCV 440
>gi|431922354|gb|ELK19445.1| DNA-binding protein RFX2 [Pteropus alecto]
Length = 101
Score = 98.6 bits (244), Expect = 8e-18, Method: Composition-based stats.
Identities = 45/49 (91%), Positives = 48/49 (97%)
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
MVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 1 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 49
>gi|440908849|gb|ELR58828.1| DNA-binding protein RFX8, partial [Bos grunniens mutus]
Length = 560
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 123/264 (46%), Gaps = 24/264 (9%)
Query: 230 IESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLI 289
+E L FW+S + LS + L KC VQ Y+ + +VL+
Sbjct: 168 VEDLLMSFWKSLQQDT------VMLLSLPDVCRLLKCYDVQ---------LYKGIEDVLL 212
Query: 290 PDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNH 349
D L + S+R F+K + WL +A++G P + K+ V F + LRR T L++
Sbjct: 213 HDFLEDVSIQYLKSVRLFSKKFKLWLLSALEGFPALLQISKLKEVTVFVKRLRRKTYLSN 272
Query: 350 LAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLT----- 404
+A+ R VL+NS +++ + +DL + V + + V D S L + ++
Sbjct: 273 MAKTMRMVLRNSRRVSVLKSDLCTIFHQGVLDSSQKVLPRDLSGANVLGENTEMKCLSSL 332
Query: 405 ---LQQQNSLEEWANWL-KNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLR 460
L L + N L N+ V +P K F + A F L+W+F + V + +TL
Sbjct: 333 ISLLGTSTDLSVFMNCLSSNLQEFVFQPSRSKEEFLQLAASFQLRWNFLLTAVSKAMTLC 392
Query: 461 SAASFGSFHLIRLLYDEYMFYLIE 484
SFGS+HL LL EY+ ++++
Sbjct: 393 HRDSFGSWHLFHLLLSEYVIHILQ 416
>gi|291386190|ref|XP_002710056.1| PREDICTED: regulatory factor X, 8 [Oryctolagus cuniculus]
Length = 602
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 126/276 (45%), Gaps = 24/276 (8%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
L ++ + +E L FW+S + LS + L KC VQ
Sbjct: 192 ILQSVKNQELDRVEDLLSSFWKSLQQDM------VMLLSLPDVCQLFKCYDVQ------- 238
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
Y+ + ++L+ D L + S+R F+K + WL A++G P + K+ V F
Sbjct: 239 --LYKGIEDILLHDFLEDVSIQYLKSVRLFSKKFKLWLLTAVEGFPALLQISKLKEVTVF 296
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQL 397
+ LRR T L+++A+ R VL+NS + N + +DL + + ++ D S L
Sbjct: 297 VKRLRRKTYLSNMAKTMRMVLKNSRRANVLKSDLRAIFSQGALDISAKALAGDLSPAADL 356
Query: 398 ESDFKL--------TLQQQNSLEEWANWLKNVVNA-VLKPFEGKPNFTKAARQFLLKWSF 448
ES ++ L L + N L + + A V +P K F K A F L+W+F
Sbjct: 357 ESHTEMQCLSSLISLLGTSTDLSVFLNCLSSNLQAFVFQPSRSKEEFMKLAANFQLRWNF 416
Query: 449 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
+ V + +TL SFGS+HL LL EY+ ++++
Sbjct: 417 LLTAVSKAMTLCHRDSFGSWHLFHLLLLEYVIHILQ 452
>gi|358414330|ref|XP_003582808.1| PREDICTED: DNA-binding protein RFX8-like [Bos taurus]
Length = 592
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 123/264 (46%), Gaps = 24/264 (9%)
Query: 230 IESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLI 289
+E L FW+S + LS + L KC VQ Y+ + +VL+
Sbjct: 193 VEDLLMSFWKSLQQDT------VMLLSLPDVCRLLKCYDVQ---------LYKGIEDVLL 237
Query: 290 PDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNH 349
D L + S+R F+K + WL +A++G P + K+ V F + LRR T L++
Sbjct: 238 QDFLEDVSIQYLKSVRLFSKKFKLWLLSALEGFPALLQISKLKEVTVFVKRLRRKTYLSN 297
Query: 350 LAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLT----- 404
+A+ R VL+NS +++ + +DL + V + + V D S L + ++
Sbjct: 298 MAKTMRMVLRNSRRVSVLKSDLCTIFHQGVLDSSQKVLPRDLSGADVLGENTEMKCLSSL 357
Query: 405 ---LQQQNSLEEWANWL-KNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLR 460
L L + N L N+ V +P + F + A F L+W+F + V + +TL
Sbjct: 358 ISLLGTSTDLSVFMNCLSSNLQEFVFQPSRSREEFLQLAASFQLRWNFLLTAVSKAMTLC 417
Query: 461 SAASFGSFHLIRLLYDEYMFYLIE 484
SFGS+HL LL EY+ ++++
Sbjct: 418 HRDSFGSWHLFHLLLSEYVIHILQ 441
>gi|359069928|ref|XP_003586661.1| PREDICTED: DNA-binding protein RFX8-like [Bos taurus]
Length = 592
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 123/264 (46%), Gaps = 24/264 (9%)
Query: 230 IESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLI 289
+E L FW+S + LS + L KC VQ Y+ + +VL+
Sbjct: 193 VEDLLMSFWKSLQQDT------VMLLSLPDVCRLLKCYDVQ---------LYKGIEDVLL 237
Query: 290 PDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNH 349
D L + S+R F+K + WL +A++G P + K+ V F + LRR T L++
Sbjct: 238 HDFLEDVSIQYLKSVRLFSKKFKLWLLSALEGFPALLQISKLKEVTVFVKRLRRKTYLSN 297
Query: 350 LAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLT----- 404
+A+ R VL+NS +++ + +DL + V + + V D S L + ++
Sbjct: 298 MAKTMRMVLRNSRRVSVLKSDLCTIFHQGVLDSSQKVLPRDLSGADVLGENTEMKCLSSL 357
Query: 405 ---LQQQNSLEEWANWL-KNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLR 460
L L + N L N+ V +P + F + A F L+W+F + V + +TL
Sbjct: 358 ISLLGTSTDLSVFMNCLSSNLQEFVFQPSRSREEFLQLAASFQLRWNFLLTAVSKAMTLC 417
Query: 461 SAASFGSFHLIRLLYDEYMFYLIE 484
SFGS+HL LL EY+ ++++
Sbjct: 418 HRDSFGSWHLFHLLLSEYVIHILQ 441
>gi|432102006|gb|ELK29826.1| DNA-binding protein RFX2 [Myotis davidii]
Length = 98
Score = 97.1 bits (240), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/49 (91%), Positives = 48/49 (97%)
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
MVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 1 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAKATGETPIAVMG 49
>gi|291242540|ref|XP_002741164.1| PREDICTED: regulatory factor X4-like, partial [Saccoglossus
kowalevskii]
Length = 496
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 15/170 (8%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + + PV V D
Sbjct: 163 ILDTVIRTNFDAVQSYLLHFWQGM---------------PPHMLPILGSTPVINIVGVCD 207
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 208 SILYKAISGVLMPSVLQALPDSLTQVIRKFAKQLDEWLRVALDDLPEALQNIKFDLARRF 267
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
+QML+R TSLNHL QA+R V+ ++ +QML + +D ++ Q +
Sbjct: 268 SQMLKRQTSLNHLCQASRTVIHSNDITSQMLEEWRTIDLSSISRQTLYTV 317
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 17/137 (12%)
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T T +P+ Q+ ++ +P+FP + + LP + V TF ++R HC+
Sbjct: 104 TGDVTKKDPARQTVAYSPRSKLGTLLPEFPSV--KDIKLPASVQEDKVSTFIMMHRTHCQ 161
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
LD ++ +F ++S FW+ + + PV V
Sbjct: 162 RILDTVIRTNFDAVQSYLLHFWQGM---------------PPHMLPILGSTPVINIVGVC 206
Query: 202 DFLFYQNLVEVLIPDAF 218
D + Y+ + VL+P
Sbjct: 207 DSILYKAISGVLMPSVL 223
>gi|426226500|ref|XP_004007381.1| PREDICTED: DNA-binding protein RFX8 [Ovis aries]
Length = 580
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 137/301 (45%), Gaps = 29/301 (9%)
Query: 226 DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVP-VQAFVRRVDFLFYQNL 284
+ +E L FW+S L + + LS +P V ++ D Y+ +
Sbjct: 177 ELERVEDLLMSFWKS--------------LQQDTVMLLS--LPDVCQLLKSYDVQLYKGI 220
Query: 285 VEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRY 344
+VL+ D L + S+R F+K + WL +A++G P + K+ V F + LRR
Sbjct: 221 EDVLLHDFLEDVSIQYLKSVRLFSKKFKLWLLSALEGFPALLQISKLKEVTVFVKRLRRK 280
Query: 345 TSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLT 404
T L+++A+ R VL+N+ +++ + +DL + V + + V D S L + ++
Sbjct: 281 TYLSNMAKTMRMVLRNTRRVSILKSDLCTIFHQGVLDISQKVLSRDLSSADVLGENTEMK 340
Query: 405 --------LQQQNSLEEWANWL-KNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIR 455
L L + N L N+ V +P K F + A F L+W+F + V +
Sbjct: 341 CLSSLISLLGTSTDLSVFMNCLSSNLQEFVFQPSRSKEEFIQLAASFQLRWNFLLTAVSK 400
Query: 456 DLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAV---IGSKESNPVESSQN 512
+TL SFGS+HL LL EY+ ++++ + E + I S + +PV+
Sbjct: 401 AMTLCHRDSFGSWHLFHLLLLEYVIHILQSCIEEEDEEDNVGSLKEILSDDQSPVQPDHE 460
Query: 513 P 513
P
Sbjct: 461 P 461
>gi|410954568|ref|XP_003983936.1| PREDICTED: DNA-binding protein RFX8 [Felis catus]
Length = 473
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 126/272 (46%), Gaps = 40/272 (14%)
Query: 230 IESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLI 289
+E L FW+S + +S + L KC VQ Y+ + +VL+
Sbjct: 80 VEDLLTSFWKSLQQDTV------MLMSLPDVCQLFKCYDVQ---------LYKGIEDVLL 124
Query: 290 PDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNH 349
D L + S+R F+K + WL NA++G P + K+ V F + LRR T L++
Sbjct: 125 HDFLEDVSIQYLKSVRLFSKKFKLWLLNALEGFPALVQISKLKEVTVFVKRLRRKTYLSN 184
Query: 350 LAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWV----------------CQCDASL 393
+A+ R VL+N+ ++N + +DL+ + + + QC +SL
Sbjct: 185 MAKTMRMVLKNNKRVNVLKSDLHAIINQGALDTSKKAPPSNPCSTADLEMHTEMQCLSSL 244
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNA-VLKPFEGKPNFTKAARQFLLKWSFYSSM 452
+ L + L++ + N L + + A V +P K F K A F L+W+F +
Sbjct: 245 ISLLGTSTDLSV--------FLNCLSSNLQAFVFQPSRNKEEFIKLAASFQLRWNFLLTT 296
Query: 453 VIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
V + +TL SFGS+HL LL EY+ ++++
Sbjct: 297 VSKAMTLCHRDSFGSWHLFHLLLLEYVIHILQ 328
>gi|350582070|ref|XP_003124920.3| PREDICTED: DNA-binding protein RFX8 [Sus scrofa]
Length = 579
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 120/264 (45%), Gaps = 24/264 (9%)
Query: 230 IESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLI 289
+E L FW+S + +S + L KC VQ Y+ + ++L+
Sbjct: 191 VEGLLMSFWKSLQQDT------VMLMSLPDVCQLLKCYDVQ---------LYRGIEDILL 235
Query: 290 PDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNH 349
D L + S+R F+K + WL A++G P + K V F + LRR T L++
Sbjct: 236 HDFLEDVSIQYLKSVRLFSKKFKLWLLTALEGFPGLLQISKHKEVTVFVKRLRRKTYLSN 295
Query: 350 LAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLT----- 404
+A+ R VL++S +++ + +DL+ + + D S LE D ++
Sbjct: 296 MAKTMRTVLKSSRRVSVLKSDLDAIIHRGTLGISKKALPRDLSSADDLEEDAEMKCLSSL 355
Query: 405 ---LQQQNSLEEWANWL-KNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLR 460
L L + N L N+ V +P K F + A F L+W+F + V R +TL
Sbjct: 356 ISLLGMSTDLSVFLNCLSSNLQVFVFQPSRSKEEFIRLAASFQLRWNFLLTAVSRAMTLC 415
Query: 461 SAASFGSFHLIRLLYDEYMFYLIE 484
SFGS+HL LL EY+ ++++
Sbjct: 416 HRDSFGSWHLFHLLLLEYVIHILQ 439
>gi|260781453|ref|XP_002585825.1| hypothetical protein BRAFLDRAFT_256969 [Branchiostoma floridae]
gi|229270879|gb|EEN41836.1| hypothetical protein BRAFLDRAFT_256969 [Branchiostoma floridae]
Length = 260
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 15/168 (8%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + + + V V D
Sbjct: 88 ILDTVIRANFDEVQSFLLHFWQGMPPH---------------MVSVIGSQTVVNIVGVCD 132
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A++ P + IK F
Sbjct: 133 SILYKAISSVLMPTVLQALPDSLTQVIRKFAKQLDEWLRVALEDLPDSLCQIKFDLARRF 192
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASW 385
+QMLRR TSLNHL QA+R V+ +S +QML D +D ++ +Q +
Sbjct: 193 SQMLRRQTSLNHLCQASRTVIHSSDITSQMLEDWRAIDIISIVKQTLY 240
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 25/133 (18%)
Query: 33 YHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSP 92
YHYYGI V+ S +I S K + + G A + SP
Sbjct: 1 YHYYGIAVRESSAYYDIIYS--------------KKGAGGYELGDPAKKEASKQTVAYSP 46
Query: 93 QSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLD 151
+S L P+FP++ DL+ LP E V TF +YR HC+ LD ++ +
Sbjct: 47 RSKLGTLL-------PEFPDVKDLN---LPSAIPKEKVSTFIMMYRTHCQRILDTVIRAN 96
Query: 152 FSTIESLWREFWR 164
F ++S FW+
Sbjct: 97 FDEVQSFLLHFWQ 109
>gi|426336624|ref|XP_004031567.1| PREDICTED: DNA-binding protein RFX8 [Gorilla gorilla gorilla]
Length = 473
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 122/264 (46%), Gaps = 24/264 (9%)
Query: 230 IESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLI 289
+E L FW+S + +S + L KC VQ Y+ + +VL+
Sbjct: 80 VEDLLTSFWKSLQQDT------VMLMSLPDVCQLFKCYDVQ---------LYKGIEDVLL 124
Query: 290 PDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNH 349
D L + S+R F+K + WL NA++G P + K+ V F + LRR T L++
Sbjct: 125 HDFLEDVSIQYLKSVRLFSKKFKLWLLNALEGVPALLRISKLKEVTLFVKRLRRKTYLSN 184
Query: 350 LAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLT----- 404
+A+ R VL++ +++ + +DL + + D S +LE++ ++
Sbjct: 185 MAKTMRMVLKSKRRVSVLKSDLQAIINQGTLATSKKALASDRSGADELENNPEMKCLRNL 244
Query: 405 ---LQQQNSLEEWANWLKNVVNA-VLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLR 460
L L + + L + + A V +P K F K A F L+W+ + V + +TL
Sbjct: 245 ISLLGTSTDLRVFLSCLSSHLQAFVFQPSRSKEEFIKLAASFQLRWNLLLTAVSKAMTLC 304
Query: 461 SAASFGSFHLIRLLYDEYMFYLIE 484
SFGS+HL LL EYM ++++
Sbjct: 305 HRDSFGSWHLFHLLLLEYMIHILQ 328
>gi|326913783|ref|XP_003203213.1| PREDICTED: DNA-binding protein RFX8-like [Meleagris gallopavo]
Length = 384
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 118/261 (45%), Gaps = 27/261 (10%)
Query: 277 DFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGA 336
D ++ L +L+ D L + SIR F+K V+ WL NA++ P + K V
Sbjct: 99 DRYLFKELDNILLGDFLEEVSVHYLKSIRMFSKNVKLWLLNALEELPMPLQTSKCKEVTV 158
Query: 337 FAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRV---------------DFHNVQE 381
F + LRR T L+++A+ R VL N++++ +++DLN V + N E
Sbjct: 159 FIKRLRRKTDLSNMAKTMRIVLNNNSKVTVLISDLNAVIDQGLLDVPGNLFQKKYGNPDE 218
Query: 382 -QASWVCQCDASLVQQL--ESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKA 438
Q + +C L+ L +D ++ L +S N+ V++P K F K
Sbjct: 219 LQYNIEIKCLNDLLSSLAHSTDIRVLLSCISS---------NLQAFVIQPSRNKQEFIKL 269
Query: 439 ARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAV 498
A F L+W+F S V + +TL A SFGS+HL LL +Y+ ++ + +
Sbjct: 270 AADFQLRWNFLLSTVSKAMTLNYADSFGSWHLFNLLLLDYVAHIFQSYIEEEEEGEESFC 329
Query: 499 IGSKESNPVESSQNPMDNGLY 519
+ + PV P G Y
Sbjct: 330 VTQQSDQPVLWVYEPSYFGGY 350
>gi|338713868|ref|XP_003362970.1| PREDICTED: DNA-binding protein RFX8 [Equus caballus]
Length = 590
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 125/264 (47%), Gaps = 24/264 (9%)
Query: 230 IESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLI 289
+E L FW+S L + + +S Q F + D Y+ + ++L+
Sbjct: 198 VEDLLTSFWKS--------------LQQDTVMLMSLPDMCQLF-KSYDVQLYKGIEDILL 242
Query: 290 PDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNH 349
D L + S+R F+K + WL NA++G P + K V F + LRR T L++
Sbjct: 243 HDFLEDVSIQYLKSVRLFSKKFKLWLLNALEGFPALLQISKRKEVTVFVKRLRRKTYLSN 302
Query: 350 LAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLT----- 404
+A+ R VL+N+ +++ + +D+ + + + + + S V +LE + ++
Sbjct: 303 MAKTMRTVLKNNQRVHILKSDVRAIISQGLPDISKKALPSNLSCVDELEKNTEMKCLSSL 362
Query: 405 ---LQQQNSLEEWANWLKNVVNA-VLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLR 460
L L + N + + + A V +P K F + A F L+W+F + V + +TL
Sbjct: 363 ISLLGTSTDLNVFLNCVSSNLQAIVFQPSRSKEEFIELAASFQLRWNFLLTAVSKAMTLC 422
Query: 461 SAASFGSFHLIRLLYDEYMFYLIE 484
SFGS+HL LL EY+ ++++
Sbjct: 423 HRDSFGSWHLFHLLLLEYVIHILQ 446
>gi|348571981|ref|XP_003471773.1| PREDICTED: DNA-binding protein RFX8-like [Cavia porcellus]
Length = 639
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 126/265 (47%), Gaps = 15/265 (5%)
Query: 269 VQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMIN 328
V ++ D Y+ L ++L+ D L + +R F++ + WL NA++G P +
Sbjct: 285 VCQLLKSYDTQLYRGLEDLLLRDFLEDVSIQYLKLVRLFSRKFKWWLLNALEGFPSILQV 344
Query: 329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQ 388
K+ V F + LRR T L+++A+ R VL+NS ++ + +DL + + ++
Sbjct: 345 SKLKEVTMFVKRLRRKTYLSNMAKTMRTVLRNSRKVRLLKSDLQAIVNKGALDISAKPLG 404
Query: 389 CDASLVQQLESDFKLT--------LQQQNSLEEWANWLKNVVNA-VLKPFEGKPNFTKAA 439
D S + ES +L L L + N L + + A + +P + K F K A
Sbjct: 405 SDRSHAEAAESHPELKCLSCLISLLGTSTDLSVFLNCLSSNLQAFIFQPSKSKEEFMKLA 464
Query: 440 RQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALA-----TGET 494
F LKW+F + V + +TL SFGS+HL LL EY+ +L + + TG
Sbjct: 465 SSFQLKWNFLLTAVSKAMTLCHRDSFGSWHLFHLLLLEYVTHLFQSCLEEEEEEEDTGIL 524
Query: 495 PIAVIGSKE-SNPVESSQNPMDNGL 518
A+ G + + PV++ P+D L
Sbjct: 525 KEALPGDRSVAPPVQALFQPLDPSL 549
>gi|167519366|ref|XP_001744023.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777985|gb|EDQ91601.1| predicted protein [Monosiga brevicollis MX1]
Length = 617
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 88/164 (53%), Gaps = 7/164 (4%)
Query: 266 CVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQ---GC 322
C+ V+ + D + Y ++ VL+P+VLRP+ + S+I + S L +
Sbjct: 204 CIKVELW----DTILYDTMLHVLVPEVLRPVGKNAISTIHTLVDDLISSLKDLKTLAVKL 259
Query: 323 PQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQ 382
P +I K TA Q++RR +LN LAQA +L + +Q+++M DL RV ++ +
Sbjct: 260 PWSLIEAKQTAGEVLEQIVRRRLALNELAQAGSKMLSSQSQVHRMRLDLERVSTDAIRRE 319
Query: 383 ASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVL 426
++WV C+ S V+Q+ ++ K L+Q L ++WL +VV V
Sbjct: 320 SAWVTGCEDSFVEQIFAELKALLEQPRGLSYTSHWLMSVVERVF 363
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 40/51 (78%)
Query: 437 KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQV 487
K +R L WSFYS ++R+LT++SA SFGSF+ +R+L DEY+FY+++ +V
Sbjct: 500 KVSRNLLQSWSFYSVQILRELTMKSAPSFGSFNALRMLLDEYLFYIVQTRV 550
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 73/177 (41%), Gaps = 33/177 (18%)
Query: 68 TDSNSNQYGSEGHTTAGQTNSNPS----PQSGNHNFLGDGSNAIPDFPEI---DLSEDC- 119
T S S + G+EG A T S + QS + N IP+ P + D+ ED
Sbjct: 87 TPSTSGKPGTEGEPQAKHTPSIDTLEMLAQSLDQNL------EIPELPYLAFEDVREDAE 140
Query: 120 -LPE--DCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEE 176
PE D T E V F YR HCE L + ++F+ + + FW G E
Sbjct: 141 DTPELADVTAEMVGEFAESYRSHCETLLSNLKEMNFAQLYANIHSFW-----TKGPEA-- 193
Query: 177 EKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESL 233
+ L+ S C+ V D + Y ++ VL+P+ L + STI +L
Sbjct: 194 HRTLAHSAAVCIK--------VELWDTILYDTMLHVLVPE-VLRPVGKNAISTIHTL 241
>gi|344284027|ref|XP_003413772.1| PREDICTED: DNA-binding protein RFX8 [Loxodonta africana]
Length = 589
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 121/260 (46%), Gaps = 24/260 (9%)
Query: 237 FWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPI 296
FW+S + ++S + L KC VQ Y+ + + L+ D L +
Sbjct: 208 FWKSLQQDT------VMFMSLPDVCQLLKCYDVQ---------LYKGIEDTLLHDFLEDV 252
Query: 297 PGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARA 356
P S+R F+K + WL NA++G P + K+ V F + LRR T L+++A+ R+
Sbjct: 253 PIQYLKSVRLFSKNFKLWLLNALEGFPALLQISKLKEVTVFVKRLRRKTYLSNMAKTMRS 312
Query: 357 VLQNSTQINQMLTDLNRVDFH---NVQEQASWVCQCDASLVQ-----QLESDFKLTLQQQ 408
VL+N+ ++N + +DL + + E+A D +Q + S L
Sbjct: 313 VLRNNRRVNILKSDLRAIISQGTLGISEKALPTSSVDVDELQNNTEMKCLSSLISLLGTS 372
Query: 409 NSLEEWANWL-KNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGS 467
L + N L N+ V + K F K A F L+W+F + V + +TL SFGS
Sbjct: 373 ADLSVFLNCLSSNLQVFVFQASGSKEEFIKLAASFQLRWNFLLTAVNKAMTLCHRDSFGS 432
Query: 468 FHLIRLLYDEYMFYLIEHQV 487
+HL LL EY+ ++++ V
Sbjct: 433 WHLFHLLLLEYVIHVLQSSV 452
>gi|15207847|dbj|BAB62948.1| hypothetical protein [Macaca fascicularis]
Length = 350
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 15/171 (8%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + + + V V D
Sbjct: 118 ILDTVIGANFDEVQSFLLHFWQGMPPH---------------MLPVLGSSTVVNIVGVCD 162
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 163 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 222
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQ 388
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + +
Sbjct: 223 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTME 273
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 27/133 (20%)
Query: 33 YHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSP 92
YHYYGI VK S + Y ++ + + G + SP
Sbjct: 33 YHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTVAYSP 76
Query: 93 QSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLD 151
+S LG +P+FP + DL+ LP E V TF +YR HC+ LD ++ +
Sbjct: 77 RSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTVIGAN 126
Query: 152 FSTIESLWREFWR 164
F ++S FW+
Sbjct: 127 FDEVQSFLLHFWQ 139
>gi|397489657|ref|XP_003815840.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein RFX8 [Pan
paniscus]
Length = 651
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 138/307 (44%), Gaps = 27/307 (8%)
Query: 230 IESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLI 289
+E L FW+S + +S + L KC VQ Y+ + +VL+
Sbjct: 258 VEDLLTSFWKSLQQDT------VMLMSLPDVCQLFKCYDVQ---------LYKGIEDVLL 302
Query: 290 PDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNH 349
L + S++ F+K + WL NA++G P + K+ V F + LRR T L++
Sbjct: 303 HYFLEDVSIQYLKSVQLFSKRFKLWLLNALEGVPALLQISKLKEVTLFVKRLRRKTYLSN 362
Query: 350 LAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLT----- 404
+A+ R VL++ +++ + +DL + + D S +LE++ ++
Sbjct: 363 MAKTMRMVLKSKRRVSVLKSDLQAIINQGTLATSKKALASDRSGADELENNPEMKCLRNL 422
Query: 405 ---LQQQNSLEEWANWLKNVVNA-VLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLR 460
L L + + L + + A V +P K FTK A F L+W+ + V + +TL
Sbjct: 423 ISLLGTSTDLRVFLSCLSSHLQAFVFQPSRSKEEFTKLAASFXLRWNLLLTAVSKAMTLC 482
Query: 461 SAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVESSQNPMDNGLYA 520
SFGS+HL LL EYM +++ Q L E + KE P + ++ D L+
Sbjct: 483 HRESFGSWHLFHLLLLEYMIHIL--QSCLEEEEEEEDMGNVKEMLPDDPTRGQPDQALF- 539
Query: 521 HGQNNIL 527
H N+ L
Sbjct: 540 HSLNSSL 546
>gi|395843242|ref|XP_003794404.1| PREDICTED: DNA-binding protein RFX8 [Otolemur garnettii]
Length = 533
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 112/227 (49%), Gaps = 28/227 (12%)
Query: 277 DFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGA 336
D Y+ + ++L+ D L + S+R F+K + WL NA++G P + K+ V
Sbjct: 233 DIQLYKGIEDILLHDFLEDVSIQYLKSVRLFSKKFKLWLLNALEGFPALLQISKLKEVTV 292
Query: 337 FAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC--------- 387
F + LRR T L+++A+ R VL+N+ +++ + +DL+ + H V S
Sbjct: 293 FVKRLRRKTYLSNMAKTMRMVLKNNRRVSILKSDLHTI-LHQVTLDISKKALAGDPSNKD 351
Query: 388 ---------QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNA-VLKPFEGKPNFTK 437
+C +SL+ L + L++ + N L + + A V +P K F K
Sbjct: 352 DELEKNSEMKCLSSLISLLGTSTDLSV--------FLNCLSSNLQAFVFQPSRSKEEFIK 403
Query: 438 AARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
A F L+W+F + V + +TL SFGS+HL LL EY+ ++++
Sbjct: 404 LAASFQLRWNFLLTAVSKAMTLCHRDSFGSWHLFHLLLLEYVIHILQ 450
>gi|172046177|sp|Q6ZV50.2|RFX8_HUMAN RecName: Full=DNA-binding protein RFX8; AltName: Full=Regulatory
factor X 8
Length = 586
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 138/307 (44%), Gaps = 27/307 (8%)
Query: 230 IESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLI 289
+E L FW+S + +S + L KC VQ Y+ + +VL+
Sbjct: 193 VEDLLTSFWKSLQQDT------VMLMSLPDVCQLFKCYDVQ---------LYKGIEDVLL 237
Query: 290 PDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNH 349
D L + S++ F+K + WL NA++G P + K+ V F + LRR T L++
Sbjct: 238 HDFLEDVSIQYLKSVQLFSKKFKLWLLNALEGVPALLQISKLKEVTLFVKRLRRKTYLSN 297
Query: 350 LAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLT----- 404
+A+ R VL++ +++ + +DL + + D S +LE++ ++
Sbjct: 298 MAKTMRMVLKSKRRVSVLKSDLQAIINQGTLATSKKALASDRSGADELENNPEMKCLRNL 357
Query: 405 ---LQQQNSLEEWANWLKNVVNA-VLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLR 460
L L + + L + + A V + K FTK A F L+W+ + V + +TL
Sbjct: 358 ISLLGTSTDLRVFLSCLSSHLQAFVFQTSRSKEEFTKLAASFQLRWNLLLTAVSKAMTLC 417
Query: 461 SAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVESSQNPMDNGLYA 520
SFGS+HL LL EYM ++++ + E + + KE P + + D L+
Sbjct: 418 HRDSFGSWHLFHLLLLEYMIHILQSCLEEEEEEEDMGTV--KEMLPDDPTLGQPDQALF- 474
Query: 521 HGQNNIL 527
H N+ L
Sbjct: 475 HSLNSSL 481
>gi|81157974|dbj|BAE48237.1| regulatory factor X4 isoform E [Homo sapiens]
Length = 390
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 73/124 (58%), Gaps = 6/124 (4%)
Query: 367 MLTDLNRVDFHNVQEQASWVCQCDA----SLVQQLESDFKLTLQQQNSLEEWANWLKNVV 422
ML D VD +++ +Q + + L+ QL +F L++Q+ +E + WL +V
Sbjct: 1 MLEDWRNVDLNSITKQTLYTMEDSRDEHRKLITQLYQEFDHLLEEQSPIESYIEWLDTMV 60
Query: 423 NAVLKPFEGK--PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMF 480
+ + K + K A+QFLL WS + + VIRD+TL SA SFGSFHLI L++D+Y+
Sbjct: 61 DRCVVKVAAKRQGSLKKVAQQFLLMWSCFGTRVIRDMTLHSAPSFGSFHLIHLMFDDYVL 120
Query: 481 YLIE 484
YL+E
Sbjct: 121 YLLE 124
>gi|194391352|dbj|BAG60794.1| unnamed protein product [Homo sapiens]
Length = 473
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 138/307 (44%), Gaps = 27/307 (8%)
Query: 230 IESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLI 289
+E L FW+S + +S + L KC VQ Y+ + +VL+
Sbjct: 80 VEDLLTSFWKSLQQDT------VMLMSLPDVCQLFKCYDVQ---------LYKGIEDVLL 124
Query: 290 PDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNH 349
D L + S++ F+K + WL NA++G P + K+ V F + LRR T L++
Sbjct: 125 HDFLEDVSIQYLKSVQLFSKKFKLWLLNALEGVPALLQISKLKEVTLFVKRLRRKTYLSN 184
Query: 350 LAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLT----- 404
+A+ R VL++ +++ + +DL + + D S +LE++ ++
Sbjct: 185 MAKTMRMVLKSKRRVSVLKSDLQAIINQGTLATSKKALASDRSGADELENNPEMKCLRNL 244
Query: 405 ---LQQQNSLEEWANWLKNVVNA-VLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLR 460
L L + + L + + A V + K FTK A F L+W+ + V + +TL
Sbjct: 245 ISLLGTSTDLRVFLSCLSSHLQAFVFQTSRSKEEFTKLAASFQLRWNLLLTAVSKAMTLC 304
Query: 461 SAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVESSQNPMDNGLYA 520
SFGS+HL LL EYM ++++ + E + + KE P + + D L+
Sbjct: 305 HRDSFGSWHLFHLLLLEYMIHILQSCLEEEEEEEDMGTV--KEMLPDDPTLGQPDQALF- 361
Query: 521 HGQNNIL 527
H N+ L
Sbjct: 362 HSLNSSL 368
>gi|224586784|ref|NP_001139136.1| DNA-binding protein RFX8 [Homo sapiens]
Length = 473
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 138/307 (44%), Gaps = 27/307 (8%)
Query: 230 IESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLI 289
+E L FW+S + +S + L KC VQ Y+ + +VL+
Sbjct: 80 VEDLLTSFWKSLQQDT------VMLMSLPDVCQLFKCYDVQ---------LYKGIEDVLL 124
Query: 290 PDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNH 349
D L + S++ F+K + WL NA++G P + K+ V F + LRR T L++
Sbjct: 125 HDFLEDVSIQYLKSVQLFSKKFKLWLLNALEGVPALLQISKLKEVTLFVKRLRRKTYLSN 184
Query: 350 LAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLT----- 404
+A+ R VL++ +++ + +DL + + D S +LE++ ++
Sbjct: 185 MAKTMRMVLKSKRRVSVLKSDLQAIINQGTLATSKKALASDRSGADELENNPEMKCLRNL 244
Query: 405 ---LQQQNSLEEWANWLKNVVNA-VLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLR 460
L L + + L + + A V + K FTK A F L+W+ + V + +TL
Sbjct: 245 ISLLGTSTDLRVFLSCLSSHLQAFVFQTSRSKEEFTKLAASFQLRWNLLLTAVSKAMTLC 304
Query: 461 SAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVESSQNPMDNGLYA 520
SFGS+HL LL EYM ++++ + E + + KE P + + D L+
Sbjct: 305 HRDSFGSWHLFHLLLLEYMIHILQSCLEEEEEEEDMGTV--KEMLPDDPTLGQPDQALF- 361
Query: 521 HGQNNIL 527
H N+ L
Sbjct: 362 HSLNSSL 368
>gi|358057784|dbj|GAA96360.1| hypothetical protein E5Q_03025 [Mixia osmundae IAM 14324]
Length = 895
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 119/231 (51%), Gaps = 16/231 (6%)
Query: 269 VQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMIN 328
++ V R + + Y ++E++ P +L P+ + +I+ + +E+ + +AM G + I+
Sbjct: 564 MKTLVCRAEGVVYDEILEIIKPRLLMPVASHVFETIQGLGENMENLVIDAMGGI-DKTIS 622
Query: 329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNS--TQINQMLTDLNRVDFHNVQEQASWV 386
++ F +L+R ++ L + +VL S + I ++ +DF ++ QA+ V
Sbjct: 623 ARIEIAARFGHLLQRSLGISQLTASLGSVLGASQYSGIGELRDAYRSIDFEGIRNQAALV 682
Query: 387 CQCDASLVQ-------QLESDFKLTLQQ-QNSLEEWANWLKNVVNAVLKPFEGKPNFTKA 438
C L+ L D + T Q Q+ LE + +++ ++ + +
Sbjct: 683 SNCPHDLLTYCFDSFGGLLEDLRPTPQAVQDILECAERCFQACLDSRVESLR-----SIS 737
Query: 439 ARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAL 489
R L++W+F +S ++RDLTL+S+ SFGSF ++ +L +E++ + + +VAL
Sbjct: 738 PRSLLVRWNFVTSQIMRDLTLKSSPSFGSFQILVMLVNEHLSWQVLRRVAL 788
>gi|358057783|dbj|GAA96359.1| hypothetical protein E5Q_03026 [Mixia osmundae IAM 14324]
Length = 894
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 119/231 (51%), Gaps = 16/231 (6%)
Query: 269 VQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMIN 328
++ V R + + Y ++E++ P +L P+ + +I+ + +E+ + +AM G + I+
Sbjct: 564 MKTLVCRAEGVVYDEILEIIKPRLLMPVASHVFETIQGLGENMENLVIDAMGGI-DKTIS 622
Query: 329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNS--TQINQMLTDLNRVDFHNVQEQASWV 386
++ F +L+R ++ L + +VL S + I ++ +DF ++ QA+ V
Sbjct: 623 ARIEIAARFGHLLQRSLGISQLTASLGSVLGASQYSGIGELRDAYRSIDFEGIRNQAALV 682
Query: 387 CQCDASLVQ-------QLESDFKLTLQQ-QNSLEEWANWLKNVVNAVLKPFEGKPNFTKA 438
C L+ L D + T Q Q+ LE + +++ ++ + +
Sbjct: 683 SNCPHDLLTYCFDSFGGLLEDLRPTPQAVQDILECAERCFQACLDSRVESLR-----SIS 737
Query: 439 ARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAL 489
R L++W+F +S ++RDLTL+S+ SFGSF ++ +L +E++ + + +VAL
Sbjct: 738 PRSLLVRWNFVTSQIMRDLTLKSSPSFGSFQILVMLVNEHLSWQVLRRVAL 788
>gi|403294287|ref|XP_003938128.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein RFX8 [Saimiri
boliviensis boliviensis]
Length = 714
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 122/270 (45%), Gaps = 36/270 (13%)
Query: 230 IESLWREFWRSQDNNN------GDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQN 283
+E L FW+S+ + D C+ L KC VQ Y+
Sbjct: 321 VEDLLTSFWKSRSRDTVMLMSLPDACQ------------LFKCYDVQ---------LYKA 359
Query: 284 LVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRR 343
+ +VL+ D L + S+R F+K + WL NA++G P + K+ V F + LRR
Sbjct: 360 IEDVLLHDFLEDVSIQYLKSVRLFSKKFKLWLLNALEGFPACLQISKLKEVTLFVKRLRR 419
Query: 344 YTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKL 403
T L+++A+ R VL++ ++ + +DL + + + D S +LE++ ++
Sbjct: 420 KTYLSNMAKTMRMVLKSKRRVGVLKSDLQAIINQDTLATSKKALASDRSSTDELENNPEM 479
Query: 404 T--------LQQQNSLEEWANWLKNVVNA-VLKPFEGKPNFTKAARQFLLKWSFYSSMVI 454
L L + + L + + A V +P K F K A F L+W+ + V
Sbjct: 480 KCLRNLISLLGTSTDLSVFLSCLSSYLQAFVFQPSRSKEEFLKLAASFQLRWNLLLTAVS 539
Query: 455 RDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
+ +TL S GS+HL LL EY+ ++++
Sbjct: 540 KAMTLCQRDSSGSWHLFHLLLLEYVIHILQ 569
>gi|344252240|gb|EGW08344.1| DNA-binding protein RFX6 [Cricetulus griseus]
Length = 582
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 99/213 (46%), Gaps = 34/213 (15%)
Query: 187 CLSKCVPVQAFVRRVDFLFYQNL----------VEVLIP------DAFLDAIVTLDFSTI 230
CL +C+ + +DF + L V+ LI LD + +F I
Sbjct: 132 CLPRCI---LYAHYLDFCRKEKLEPACAATFGKVDTLIMMYKTHCQCILDNAINGNFEEI 188
Query: 231 ESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIP 290
+ FW+ ++ E + +FC+ D + Y+ L +VLIP
Sbjct: 189 QHFLLHFWQGMPDHLLPLLENPVIID---IFCV------------CDSILYKVLTDVLIP 233
Query: 291 DVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHL 350
++ +P SL + IRNFAK E W+ ++++ P+ + + K+ V F L+R TS HL
Sbjct: 234 ATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRFVSSLKRQTSFLHL 293
Query: 351 AQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA 383
AQ AR L + +N M++D+ +VD +++ QA
Sbjct: 294 AQIARPALFDQHVVNSMVSDIEKVDLNSIGSQA 326
>gi|81157976|dbj|BAE48238.1| regulatory factor X4 isoform F [Homo sapiens]
Length = 370
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 61/94 (64%), Gaps = 2/94 (2%)
Query: 393 LVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYS 450
L+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS +
Sbjct: 11 LITQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFG 70
Query: 451 SMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
+ VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 71 TRVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 104
>gi|444707543|gb|ELW48814.1| DNA-binding protein RFX6 [Tupaia chinensis]
Length = 795
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 15/166 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 218 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 262
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + K+ V F
Sbjct: 263 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTEKKIPIVRRF 322
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA 383
L+R TS HLAQ AR L + +N M++D+ +VD +++ QA
Sbjct: 323 VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIEKVDLNSIGSQA 368
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 77/200 (38%), Gaps = 41/200 (20%)
Query: 107 IPDFPEID--LSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWR 164
+P+FP + + C+ +D VDT +Y+ HC+ LD + +F I+ FW+
Sbjct: 184 LPEFPSAQHLVYQGCISKD----KVDTLIMMYKTHCQCILDNAINGNFEEIQHFLLHFWQ 239
Query: 165 SQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVT 224
++ E + +FC+ D + Y+ L +VLIP + +
Sbjct: 240 GMPDHLLPLLENPVII---DIFCV------------CDSILYKVLTDVLIPATMQEMPES 284
Query: 225 L--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDF---- 278
L D W E W N E EK + + F V + R+ F
Sbjct: 285 LLADIRNFAKNW-EQWVVSSLENLPEALTEKKIPIVRRF-------VSSLKRQTSFLHLA 336
Query: 279 ------LFYQNLVEVLIPDV 292
LF Q++V ++ D+
Sbjct: 337 QIARPALFDQHVVNSMVSDI 356
>gi|297666924|ref|XP_002811751.1| PREDICTED: DNA-binding protein RFX8 isoform 2 [Pongo abelii]
Length = 586
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 121/264 (45%), Gaps = 24/264 (9%)
Query: 230 IESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLI 289
+E L FW+S + +S + L KC VQ Y+ + +VL+
Sbjct: 193 VEDLLTSFWKSLQQDT------IMLMSLPDVCQLFKCYDVQ---------LYKGIEDVLL 237
Query: 290 PDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNH 349
D L + S+R F+K + WL +A++G + K+ V F + LRR T L++
Sbjct: 238 HDFLEDVSIQYLKSVRLFSKKFKLWLLSALEGVLALLQISKLKEVTLFVKRLRRKTYLSN 297
Query: 350 LAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLT----- 404
+A+ R VL++ +++ + +DL + + D S +LE++ ++
Sbjct: 298 MAKTMRMVLKSKRRVSVLKSDLQAIINQGTLATSKKALASDWSGADELENNPEMKCLRNL 357
Query: 405 ---LQQQNSLEEWANWLKNVVNA-VLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLR 460
L L + + L + + A V +P K F K A F L+W+ + V + +TL
Sbjct: 358 ISLLGTSTDLRVFLSCLSSHLQAFVFQPSRSKEEFIKLAASFQLRWNLLLTAVSKAMTLC 417
Query: 461 SAASFGSFHLIRLLYDEYMFYLIE 484
SFGS+HL LL EY+ ++++
Sbjct: 418 HGDSFGSWHLFHLLLLEYIIHILQ 441
>gi|297666922|ref|XP_002811750.1| PREDICTED: DNA-binding protein RFX8 isoform 1 [Pongo abelii]
Length = 473
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 121/264 (45%), Gaps = 24/264 (9%)
Query: 230 IESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLI 289
+E L FW+S + +S + L KC VQ Y+ + +VL+
Sbjct: 80 VEDLLTSFWKSLQQDTI------MLMSLPDVCQLFKCYDVQ---------LYKGIEDVLL 124
Query: 290 PDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNH 349
D L + S+R F+K + WL +A++G + K+ V F + LRR T L++
Sbjct: 125 HDFLEDVSIQYLKSVRLFSKKFKLWLLSALEGVLALLQISKLKEVTLFVKRLRRKTYLSN 184
Query: 350 LAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLT----- 404
+A+ R VL++ +++ + +DL + + D S +LE++ ++
Sbjct: 185 MAKTMRMVLKSKRRVSVLKSDLQAIINQGTLATSKKALASDWSGADELENNPEMKCLRNL 244
Query: 405 ---LQQQNSLEEWANWLKNVVNA-VLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLR 460
L L + + L + + A V +P K F K A F L+W+ + V + +TL
Sbjct: 245 ISLLGTSTDLRVFLSCLSSHLQAFVFQPSRSKEEFIKLAASFQLRWNLLLTAVSKAMTLC 304
Query: 461 SAASFGSFHLIRLLYDEYMFYLIE 484
SFGS+HL LL EY+ ++++
Sbjct: 305 HGDSFGSWHLFHLLLLEYIIHILQ 328
>gi|391326611|ref|XP_003737806.1| PREDICTED: transcription factor RFX4-like [Metaseiulus
occidentalis]
Length = 597
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 106/231 (45%), Gaps = 28/231 (12%)
Query: 272 FVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKV 331
V D Y+ + +L+P + +P+P S I F + ESWL A+ G P+ + +K+
Sbjct: 185 LVALCDSTLYKTVCNLLVPSLTQPLPESFVRMIEYFTQDYESWLDRALGGFPKALQQVKM 244
Query: 332 TAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHN------VQEQASW 385
F LRR +N L+QA++ +L N I Q+L+D + +Q++ ++
Sbjct: 245 EFGKHFMGQLRRRVEVNQLSQASKILLANRQLITQVLSDWRALRMSAGRGLLILQKERTF 304
Query: 386 VCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAV-----------LKPFEGK-- 432
C +V + S+ + L+ NSLE W+ +VV K F G
Sbjct: 305 ---CHQDVVLSVLSELESCLETSNSLETLLLWMDSVVEKFTSGGNRSHAKRTKNFPGSRP 361
Query: 433 PNFTKAAR----QFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYM 479
P ++ R FL W+ S + R+ ++ F SF L+R+L D+Y+
Sbjct: 362 PATSQMVRDISCSFLRAWTECSQRIFRE--IQETPHFPSFQLLRILCDDYI 410
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 23/136 (16%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENG-SPRGKKYKLVKTDSNSNQYGSEGHTTAGQTN 87
G S+YHYYGI ++ SP S ++G +P G+K +L K +SN++ +
Sbjct: 53 GQSRYHYYGIAIREHSPYFEPTYSRKSGETPDGQKRELHK-ESNASAVANVSQRV----- 106
Query: 88 SNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
S +P+FP L + E V +F ++YR HC+ LD I
Sbjct: 107 --------------KLSAVLPNFP--SLRTLSVSPSVDREQVASFLTMYRAHCQRVLDTI 150
Query: 148 VTLDFSTIESLWREFW 163
+++ + + FW
Sbjct: 151 LSMSLEQVRVNLQHFW 166
>gi|326437514|gb|EGD83084.1| hypothetical protein PTSG_12063 [Salpingoeca sp. ATCC 50818]
Length = 942
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 101/220 (45%), Gaps = 24/220 (10%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV- 276
L+A+ ++ F + ++ FW + + + +P + ++
Sbjct: 469 MLEAVKSVSFGNVYAMIHAFWTDLPDR------------------MRQLLPSEGLSNKIE 510
Query: 277 --DFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESW---LTNAMQGCPQEMINIKV 331
D + Y ++ V +P++LRP+ + +I F + + S L + P +I K
Sbjct: 511 LWDSILYDTMLHVFVPEILRPVGTNAHRTIVTFVEDIVSTVKDLESLDANLPPNIIRAKK 570
Query: 332 TAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDA 391
A ++++R +LN+LAQA +L + Q+ QM TDL+RV+ ++ +++WV C
Sbjct: 571 AAAEVLQEIMQRRMALNNLAQAGMKMLNSHAQVEQMRTDLDRVNLKAIKRESAWVTDCPD 630
Query: 392 SLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEG 431
+ V ++ ++ L Q L ++WL ++V K G
Sbjct: 631 AFVDRIFAELLEFLDQPRGLSYASHWLDSIVKRTFKSMVG 670
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 41/51 (80%)
Query: 437 KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQV 487
K AR+ L W+FYSS ++R+LT++SA SFGS ++++LL DEYM+YLI +V
Sbjct: 862 KTARKLLQAWTFYSSQILRELTMKSAPSFGSCNVLKLLMDEYMYYLIHTRV 912
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 37/198 (18%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTN- 87
G+SKYHY G+R+KP S + + L+DE + + DSNS + +
Sbjct: 357 GHSKYHYEGLRIKPSSAVAMLRLADE-------ETEATTHDSNSMLGMGSSSSVTSPISR 409
Query: 88 -SNPSPQSGNHNFLGDGSNAIPDFPEIDLSED--CLPEDCTI---EDVDTFRSIYREHCE 141
S + H+ D S +P FP ++L E + E T ED+ +F +YR HC
Sbjct: 410 ISTGTLMMLMHSM--DKSLQLPGFPHLELEEVGVAVTERDTASLEEDIASFCELYRNHCV 467
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
L+A+ ++ F + ++ FW + + + +P + ++
Sbjct: 468 TMLEAVKSVSFGNVYAMIHAFWTDLPDR------------------MRQLLPSEGLSNKI 509
Query: 202 ---DFLFYQNLVEVLIPD 216
D + Y ++ V +P+
Sbjct: 510 ELWDSILYDTMLHVFVPE 527
>gi|241118206|ref|XP_002402147.1| rfx4, putative [Ixodes scapularis]
gi|215493270|gb|EEC02911.1| rfx4, putative [Ixodes scapularis]
Length = 319
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 108/204 (52%), Gaps = 7/204 (3%)
Query: 277 DFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGA 336
D L Y L VL+P +L+P+P S++ ++R F++ +E WL A+ G P + +K+
Sbjct: 104 DNLLYGALSGVLLPPLLQPMPDSVSRAMRTFSEDLEKWLDGAVAGFPDNLRTVKIEMGRR 163
Query: 337 FAQMLRRYTSLNHLAQAARAVLQNSTQ-INQMLTDLNRVDFHNVQEQASWVCQ----CDA 391
F+Q LRR+ SL+ L QA R + + +Q ML D +++D + ++ + Q
Sbjct: 164 FSQSLRRHLSLSQLVQAWRVLARGGSQGSGHMLRDWSQLDLTALCQETLFGGQQQPRPSL 223
Query: 392 SLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAV--LKPFEGKPNFTKAARQFLLKWSFY 449
+ +L +F+ L + +E + +WL+ V+ L + K A +FLL WS +
Sbjct: 224 HFLYRLVKEFEAFLAEDTPVEVYLDWLEAVIRKTVSLPSLRRGLSARKLAGEFLLLWSAF 283
Query: 450 SSMVIRDLTLRSAASFGSFHLIRL 473
+ +IRD+TL SA +FG + L
Sbjct: 284 GTRIIRDMTLHSATTFGKLRCLHL 307
>gi|440799843|gb|ELR20886.1| RFX DNAbinding domain containing protein [Acanthamoeba castellanii
str. Neff]
Length = 718
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 123/281 (43%), Gaps = 30/281 (10%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
L + + F+ +ESL FW N GD +E +L + + + D
Sbjct: 238 LLSVLCSCSFTEVESLLVTFW---SQNFGDF--QEVFLRED----------IINHITSKD 282
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
L Y ++ P + P SL S+ + ++ + +W+ A Q P K+ V F
Sbjct: 283 RLIYSLALDFFFPTLFEPQVKSLIESLIHLSQHIRAWMEKATQHFPPAFSARKLHEVKRF 342
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDAS----- 392
A LR+ + +N LAQ AR L+ S ML D ++F +Q++ + +AS
Sbjct: 343 ALNLRKRSRINLLAQQARECLEWSI----MLVDWIGIEFDIIQDKTFMLFSSNASNSVPH 398
Query: 393 -LVQQLESDFKLTLQQQNSLEEWANWLKNVVN-----AVLKPFEGKPNFTKAARQFLLKW 446
+ + D + L+ +L+++ W++ V + L E A+ FL W
Sbjct: 399 YITATITEDLRGMLEDHCNLDQFVTWMRLVADELVEQGALPAPEKLSESIYRAQTFLFCW 458
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQV 487
+ Y+S+++ DLT R A S FH + + Y+ Y +E +V
Sbjct: 459 AQYTSLIMCDLTCRDAPSLEFFHALFTFLNAYVSYYMEGKV 499
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 59/152 (38%), Gaps = 33/152 (21%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G +K+HY+GI + S L +P + GKK + N G + T S
Sbjct: 123 GKTKHHYHGISISSASKLQ-VP---ADAIITGKKAQ------NRRVRGPD------VTAS 166
Query: 89 NPSPQSGNHNFLGDG--------------SNAIPDFPEIDLSEDCLP---EDCTIEDVDT 131
P Q H + DG IP P DL E D I+ +
Sbjct: 167 PPKRQRRAHKLMEDGLDFPDYPEDGEQFMRRPIPALPSFDLEEIAFMGEVSDTLIQQLRH 226
Query: 132 FRSIYREHCEAFLDAIVTLDFSTIESLWREFW 163
F S+Y++H + L + + F+ +ESL FW
Sbjct: 227 FMSLYKQHAQHLLSVLCSCSFTEVESLLVTFW 258
>gi|332251565|ref|XP_003274915.1| PREDICTED: DNA-binding protein RFX8 [Nomascus leucogenys]
Length = 473
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 118/264 (44%), Gaps = 24/264 (9%)
Query: 230 IESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLI 289
+E L FW+S + +S + L KC VQ Y+ + +VL
Sbjct: 80 VEDLLTSFWKSLQQDT------VMLMSLPDMCQLFKCYDVQ---------LYKGIEDVLF 124
Query: 290 PDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNH 349
D L + S+R F+K + WL NA++G P + K+ V F + LRR T L++
Sbjct: 125 HDFLEDVSIQYLKSVRLFSKKFKLWLLNALEGFPALLQISKLKEVTLFVKRLRRKTYLSN 184
Query: 350 LAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLT----- 404
+A+ R VL++ +++ + +DL + D +LE++ ++
Sbjct: 185 MAKTMRMVLKSKRRVSVLKSDLQAIINQGTLATYKKALASDRRGADELENNPEMKCLRNL 244
Query: 405 ---LQQQNSLEEWANWLKNVVNA-VLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLR 460
L L + + L + + A V +P K F K A F L+W+ + V + +TL
Sbjct: 245 ISLLGTLTDLRVFLSCLSSHLQALVFQPSRSKEEFIKLAASFQLRWNLLLTAVSKAMTLC 304
Query: 461 SAASFGSFHLIRLLYDEYMFYLIE 484
SFGS+HL LL EY+ +++
Sbjct: 305 HRDSFGSWHLFHLLLLEYVIPILQ 328
>gi|350583866|ref|XP_003126131.3| PREDICTED: transcription factor RFX4 [Sus scrofa]
Length = 886
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 400 DFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSSMVIRDL 457
+F L++Q+ +E + WL +V+ + K + K A+QFLL WS + + VIRD+
Sbjct: 534 EFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGTRVIRDM 593
Query: 458 TLRSAASFGSFHLIRLLYDEYMFYLIE 484
TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 594 TLHSAPSFGSFHLIHLMFDDYVLYLLE 620
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 15/135 (11%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + + + V V D
Sbjct: 221 ILDTVIRANFDEVQSFLLHFWQGMPPH---------------MLPVLGSSTVVNIVGVCD 265
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 266 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 325
Query: 338 AQMLRRYTSLNHLAQ 352
+Q+LRR TSLNHL Q
Sbjct: 326 SQILRRQTSLNHLCQ 340
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 132 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 175
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 176 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 225
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 226 IRANFDEVQSFLLHFWQ 242
>gi|347829210|emb|CCD44907.1| similar to transcription factor RfxA [Botryotinia fuckeliana]
Length = 796
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 71/320 (22%), Positives = 127/320 (39%), Gaps = 56/320 (17%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQAF---------VRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E+ + F + +PVQ + + D + YQ+++ V+ P L+ +P
Sbjct: 412 CKEKTFFHLFTAFQGTLTMPVQKLFADKALAPWINQCDIIMYQSMMRVVAPLTLQVVPKV 471
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ ++RN + + + + N+ G P +I KV FA +L + +N A AA +L
Sbjct: 472 VLDTLRNISDRLVTHIQNSFHGQPAHVIEAKVGPATTFASLLDKELRVNLTAHAAANMLS 531
Query: 360 NSTQINQMLTD-LNRVDFHNVQE-------------------------QASWVCQCD--- 390
N + M D + V+ V E + SW +
Sbjct: 532 NPYNRDTMYEDFITMVNIRKVAESVPTRGMDDVVNLLITELRDLLDPSEVSWETEGQTPF 591
Query: 391 ----ASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKW 446
A + +Q ++ +N L+ W N L ++ P A + W
Sbjct: 592 GEMVARMGRQRQASVHADPTTENVLDRWVNMLLSL-----------PGKFPYATHAEIVW 640
Query: 447 SF--YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKES 504
+ V+RDLT+ SFG++ + + DE + ++ E Q ET +VIG+
Sbjct: 641 CVQKIGTAVMRDLTIAQGKSFGAWWVTKCWLDEMIAFMAE-QGGFMQRETIQSVIGNMPR 699
Query: 505 NPVESSQNPMDNGLYAHGQN 524
NP S +N G Y+ G +
Sbjct: 700 NPAASRRNSQQEGRYSGGND 719
>gi|296415183|ref|XP_002837271.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633132|emb|CAZ81462.1| unnamed protein product [Tuber melanosporum]
Length = 744
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 104/235 (44%), Gaps = 30/235 (12%)
Query: 269 VQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMIN 328
+ +++R D++ Y+ ++ +L P L+ +P + +++R+ + + S ++ PQ +I+
Sbjct: 444 IASWIRESDWVMYKEMIRLLSPLALQVVPPFVVTALRHLSTNLTSHISMTFAVQPQHVID 503
Query: 329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQ 388
K+ F+ +L R +N A AA L N QM+ D D+ N Q
Sbjct: 504 AKIVPSSIFSSLLDRLLRVNDAAHAAARFLGNPPDREQMVKDWK--DYVNAQTIVDRELP 561
Query: 389 CDASLVQQLESDFKLTLQQQNS-------------------LEEWANWLKNVVNAVLKPF 429
C ++ V+++ +TL Q S L+ W +L + + F
Sbjct: 562 CGSATVREILQTEVITLLQPPSTSVNGIPEVEDGSASTESVLDRWTQFLTYLPHR----F 617
Query: 430 EGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
G R F L +S +RDLT A SFGS+ ++R DE+M +L E
Sbjct: 618 PGT-----DPRLFNLCLGAAASAALRDLTTNGAVSFGSWWVVRCWVDEWMGWLAE 667
>gi|301767612|ref|XP_002919234.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
FLJ42986-like [Ailuropoda melanoleuca]
Length = 586
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 114/258 (44%), Gaps = 44/258 (17%)
Query: 230 IESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLI 289
+E L FW+S + ++ + L KC VQ Y+ + +VL+
Sbjct: 193 VEDLLTSFWKSLQQDT------VMLMTLPDVCQLFKCYDVQ---------LYKGIEDVLL 237
Query: 290 PDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNH 349
D L S+R F+K + WL NA++ P + KV V F + LRR T L++
Sbjct: 238 HDFLEDFSIQYLKSVRLFSKKFKLWLLNALERFPAIVQISKVKEVTVFVKRLRRKTYLSN 297
Query: 350 LAQAARAVLQNSTQINQMLTDLNRV------------------DFHNVQEQASWVCQCDA 391
+A+ R VL+N+ ++N + ++L+ + +++ W +C +
Sbjct: 298 MAKTMRTVLKNNRRVNVLKSELHAIINRGALDTSKKALPSHPSSAGDLETHTEW--KCLS 355
Query: 392 SLVQQLESDFKLTLQQQNSLEEWANWL-KNVVNAVLKPFEGKPNFTKAARQFLLKWSFYS 450
SL+ L + L++ + N L N+ V +P K F + A F L+W+F
Sbjct: 356 SLIALLGTSTDLSI--------FLNCLSSNLQTFVFQPSRSKEEFIRLAASFQLRWNFLL 407
Query: 451 SMVIRDLTLRSAASFGSF 468
+ V R +TL SFGS+
Sbjct: 408 TAVSRAMTLCHRDSFGSW 425
>gi|399788384|ref|NP_001257816.1| DNA-binding protein RFX8 [Canis lupus familiaris]
Length = 461
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 113/248 (45%), Gaps = 24/248 (9%)
Query: 230 IESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLI 289
+E L FW+S L + + +S Q F + D Y+ + ++L+
Sbjct: 80 VEDLLTSFWKS--------------LQQDTVMLMSLPDVCQLF-KYYDVQLYKGIEDILL 124
Query: 290 PDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNH 349
D L + S+R F+K + WL NA++G P + K+ V F + LRR T L++
Sbjct: 125 HDFLEDVSIQYLKSVRLFSKKFKLWLLNALEGFPALVQISKLKEVTVFVKRLRRKTYLSN 184
Query: 350 LAQAARAVLQNSTQINQMLTDLNRV------DFHNVQEQASWVCQCDASLVQQLE--SDF 401
+A+ R +L+N+ +++ + +DL+ + D ++ D + +++ S
Sbjct: 185 MAKTMRMLLENNRRVHILKSDLHAIIDQGTLDLSKKALPSTPSSSVDLEMHTEMKCLSSL 244
Query: 402 KLTLQQQNSLEEWANWL-KNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLR 460
L L + N L N+ VL+P K F + A F L+W+F + V + +TL
Sbjct: 245 IALLGTSTDLSVFLNCLYSNLQTFVLQPSRNKEEFVQLAASFQLRWNFLLTAVSKAMTLC 304
Query: 461 SAASFGSF 468
SFGS+
Sbjct: 305 HRESFGSW 312
>gi|405967266|gb|EKC32448.1| Transcription factor RFX4 [Crassostrea gigas]
Length = 503
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 123/279 (44%), Gaps = 31/279 (11%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F I + EFWRS + L LS + V A + R D
Sbjct: 239 LLDCVLRAEFYQIRDIIVEFWRS--------------IPALTLKLLSDPLVVAA-IERCD 283
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+N+ +L+P VL P+P L +++NF K + W + + P + KV A F
Sbjct: 284 QIIYRNMNGLLLPHVLVPLPSGLMLTLKNFVKNLLHWHQDGLYCIPPIIKYAKVKACYRF 343
Query: 338 AQMLRRYTSLNHLAQAARAVLQN---STQINQMLTDLNRVDFHNVQEQASWV-CQCDASL 393
R LNH++ A +V+++ + I + L R F N + A L
Sbjct: 344 KTSFLRQIQLNHMSITANSVVESRDTAATIQRAWHQLQRT-FKNTPLFYHFSPASIGADL 402
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTK--------AARQFLLK 445
V Q ++ SL E NW++ V VLK E ++ RQF+L+
Sbjct: 403 VYQFLQEYGNLWDTSCSLSEHLNWVEGV---VLKSMEKVTRLSQNKLKLREELIRQFVLE 459
Query: 446 WSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
W++ S+ + + +T + G HL+ + Y +YM +L+E
Sbjct: 460 WTYISTQIFKMITFICLETLGPLHLLDMFYRDYMLFLLE 498
>gi|440793985|gb|ELR15156.1| hypothetical protein ACA1_217180 [Acanthamoeba castellanii str.
Neff]
Length = 645
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 111/260 (42%), Gaps = 20/260 (7%)
Query: 270 QAFVRRV---DFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQ-GCPQE 325
QA V ++ D FY +V L+PDVL S + + A+ L AM P
Sbjct: 327 QAIVDQIADSDLQFYGWMVGQLVPDVLADTSEDKLSRLLHLAESFVPLLKAAMTYSLPPA 386
Query: 326 MINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNST---QINQMLTDLNRVDFHNVQEQ 382
+ K F++ LR + L+ RAVL++ ++ M +R+DF + E+
Sbjct: 387 LAESKARTAMNFSKTLRSRAVVARLSTRLRAVLEHDAGREEVQAMTAGWHRLDFDFIDEK 446
Query: 383 ASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLK-PFEGKPNFTKAARQ 441
+ + + + + LQQ+ L++W+ WL + +V K FE + ++
Sbjct: 447 TAIYGRFR-HIAMTFREGYTVLLQQRRRLDDWSAWLMRLAESVAKGEFESQ---ARSMGD 502
Query: 442 FLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGS 501
FL+KW YS +V+ +L + A +F+L+ F ++ +AL E I
Sbjct: 503 FLMKWGVYSHLVLCNLAVLRAERMETFYLL--------FDWVQTLLALCLEEQEITGTLR 554
Query: 502 KESNPVESSQNPMDNGLYAH 521
+ P Q M+ G H
Sbjct: 555 RRHTPYRPLQGEMERGRVDH 574
>gi|392578393|gb|EIW71521.1| hypothetical protein TREMEDRAFT_60446 [Tremella mesenterica DSM
1558]
Length = 984
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 100/229 (43%), Gaps = 21/229 (9%)
Query: 281 YQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQM 340
Y ++V VL+ VL P+ + +S+R ++ +ES + +++G P+E K A +
Sbjct: 680 YDHMVSVLLSKVLAPLSANSQNSLRALSQNLESIMEESLRGFPREFCEDKFELTVRVAHL 739
Query: 341 LR-----------RYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
+ R+ L+ L A +L N Q+ ML +D + +Q + C
Sbjct: 740 FKWQSKNDRLFLVRFIDLHQLTAALSPILANQDQVRSMLNAWENLDMSVISDQCALSANC 799
Query: 390 DASLVQQLESDFKLTL--------QQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQ 441
+++ + +F L + ++E W+ V++ + E R
Sbjct: 800 QQDVLEGILREFHRWLLDAEASPNRGGKAIERLGQWIDGVLHDLQHGSEMAAPM--PLRA 857
Query: 442 FLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALA 490
+ + F +S V+RD TL+S SFG F LI+ D+++ Q AL+
Sbjct: 858 LVPRAGFITSQVMRDFTLKSDPSFGLFQLIKTWIDDWISIHALRQTALS 906
>gi|384498378|gb|EIE88869.1| hypothetical protein RO3G_13580 [Rhizopus delemar RA 99-880]
Length = 151
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 61/137 (44%)
Query: 261 FCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQ 320
F + V V R D LFY ++E +P V P+ + ++R F + + + +
Sbjct: 14 FLIRDVPEVTEAVWRYDSLFYDTIIERFLPAVNYPLSQRMMITLRAFTRELAGLIDTYVS 73
Query: 321 GCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQ 380
P K+ FA RR+ SLNH AQ A +L ++ M D DF +
Sbjct: 74 SFPVNFYQKKLDVARIFAAKFRRHLSLNHAAQTASVILNMPEHLSAMRKDWEHFDFDGLL 133
Query: 381 EQASWVCQCDASLVQQL 397
+Q WVC C+ S V+ +
Sbjct: 134 DQTLWVCDCNISEVRHI 150
>gi|154311485|ref|XP_001555072.1| hypothetical protein BC1G_06595 [Botryotinia fuckeliana B05.10]
Length = 345
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%)
Query: 280 FYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQ 339
YQ+++ V+ P L+ +P + ++RN + + + + N+ G P +I KV FA
Sbjct: 1 MYQSMMRVVAPLTLQVVPKVVLDTLRNISDRLVTHIQNSFHGQPAHVIEAKVGPATTFAS 60
Query: 340 MLRRYTSLNHLAQAARAVLQNSTQINQMLTD-LNRVDFHNVQE----------------- 381
+L + +N A AA +L N + M D + V+ V E
Sbjct: 61 LLDKELRVNLTAHAAANMLSNPYNRDTMYEDFITMVNIRKVAESVPTRGMDDVVNLLITE 120
Query: 382 --------QASWVCQCD-------ASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVL 426
+ SW + A + +Q ++ +N L+ W N +L
Sbjct: 121 LRDLLDPSEVSWETEGQTPFGEMVARMGRQRQASVHADPTTENVLDRWVN--------ML 172
Query: 427 KPFEGKPNFTKAARQFLLKWSF--YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
GK + A + W + V+RDLT+ SFG++ + + DE + ++ E
Sbjct: 173 LSLPGKFPYATHAE---IVWCVQKIGTAVMRDLTIAQGKSFGAWWVTKCWLDEMIAFMAE 229
Query: 485 HQVALATGETPIAVIGSKESNPVESSQNPMDNGLYAHGQN 524
Q ET +VIG+ NP S +N G Y+ G +
Sbjct: 230 -QGGFMQRETIQSVIGNMPRNPAASRRNSQQEGRYSGGND 268
>gi|238585370|ref|XP_002390846.1| hypothetical protein MPER_09814 [Moniliophthora perniciosa FA553]
gi|215454757|gb|EEB91776.1| hypothetical protein MPER_09814 [Moniliophthora perniciosa FA553]
Length = 182
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 9/149 (6%)
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV F ++ R+ + + QA VL N Q+ +M +VDF +V+ Q++ VC C
Sbjct: 20 KVELGARFGHLVLRFLDIYQVTQALNTVLTNQKQLAEMRRSWQKVDFESVRNQSALVCNC 79
Query: 390 -DASLVQQLESDFKLTL----QQQNSLEEWANWLKNVVNAVLKPFEGKPNF----TKAAR 440
LVQ LE +F + + + E +W + ++ G T ++R
Sbjct: 80 RHEDLVQLLEVEFVAMMDSLTKTTEPVREVMSWADKCCDRLMGSVRGTHGTADRSTMSSR 139
Query: 441 QFLLKWSFYSSMVIRDLTLRSAASFGSFH 469
L++W + +S V+RD T+RS +FG+F
Sbjct: 140 SVLIRWGYVTSQVMRDSTIRSDPAFGAFQ 168
>gi|170036858|ref|XP_001846278.1| brg-1 associated factor [Culex quinquefasciatus]
gi|167879813|gb|EDS43196.1| brg-1 associated factor [Culex quinquefasciatus]
Length = 150
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 36/45 (80%)
Query: 334 VGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHN 378
V F LRRYTS NHLAQAARAVLQNSTQI QML LNRVDFH+
Sbjct: 7 VCVFLCTLRRYTSSNHLAQAARAVLQNSTQIAQMLNGLNRVDFHH 51
>gi|195995865|ref|XP_002107801.1| hypothetical protein TRIADDRAFT_51678 [Trichoplax adhaerens]
gi|190588577|gb|EDV28599.1| hypothetical protein TRIADDRAFT_51678 [Trichoplax adhaerens]
Length = 741
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/291 (20%), Positives = 127/291 (43%), Gaps = 37/291 (12%)
Query: 203 FLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFC 262
F+ Y+ + + L+A++ +F I++ FW+ + L
Sbjct: 157 FIMYKTHCQCV-----LNAVINANFDQIDTFLCHFWQG---------------IPTHLIS 196
Query: 263 LSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGC 322
L K V V D Y+ L +++IP ++ G + S IR K ESW+ A++
Sbjct: 197 LMKEPAVIDIVCYYDHTLYKVLNDIMIPKAMQAASGHILSEIRTMVKRFESWVVTALKNL 256
Query: 323 PQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQN---STQINQMLTDLNRVDFHNV 379
P+ ++ K+ F LRR TS L + + + T+I + + +V +++
Sbjct: 257 PETLLKRKLIVATHFIHSLRRQTSFIFLMLEWQRLYEKPELQTKIVHCVKGI-KVKTNDI 315
Query: 380 QEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVV------NAVLKPFEGKP 433
+ +++ D +++ ++ S +K + ++S+ + WL ++V N +++ E +P
Sbjct: 316 EHEST---NQDTTIIYEVISTWKKLMANKSSINGYIEWLDDLVKHEVAKNGLMRLDEYQP 372
Query: 434 NFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
A FL WS + V + + + H ++++ +EY+ +E
Sbjct: 373 ----YACHFLALWSKATQFVSTRMKGCEPSVCDAIHTLKMMLNEYLCLAME 419
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 79/210 (37%), Gaps = 48/210 (22%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI +K SP Y + H+ +G T
Sbjct: 83 GKSKYHYYGIGIKESSP-----------------------------YYNGLHSFSGLTRF 113
Query: 89 NPSPQSGNHNFLGDGSNAI-PDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
+ + +L + + + P FP P + VDTF +Y+ HC+ L+A+
Sbjct: 114 SGGRTADQGQYLSENTGTLLPPFPSA--KRLVFPSNIPTAKVDTFFIMYKTHCQCVLNAV 171
Query: 148 VTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQ 207
+ +F I++ FW+ + L L K V V D Y+
Sbjct: 172 INANFDQIDTFLCHFWQG---------------IPTHLISLMKEPAVIDIVCYYDHTLYK 216
Query: 208 NLVEVLIPDAFLDAIVTLDFSTIESLWREF 237
L +++IP A + A S I ++ + F
Sbjct: 217 VLNDIMIPKA-MQAASGHILSEIRTMVKRF 245
>gi|310792562|gb|EFQ28089.1| RFX DNA-binding domain-containing protein [Glomerella graminicola
M1.001]
Length = 767
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 109/278 (39%), Gaps = 51/278 (18%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E+ + F + +PVQ +V DF+ YQ ++ ++ L+ +P
Sbjct: 390 CKEKTFFHLYTSFQGTLTMPVQKLLGHPSLAPWVEECDFILYQRMLRIISGLTLQVVPKP 449
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ ++RN ++ + + A QG P +I K FA +L R +N A AA +L
Sbjct: 450 VLDTLRNISERLVPHIREAFQGQPHHVIRAKEAPATIFAALLDRALRVNLTAHAAANMLS 509
Query: 360 NSTQINQMLTD-LNRVDFHNVQE-------------------------QASWVCQC---- 389
N +QM D + V V E W +C
Sbjct: 510 NPANRDQMYLDWITMVRVRKVAECVPTRGMDDLVSLLVSELRDLLSPQNVPWEVECLTVY 569
Query: 390 -DASLVQQLESDFKLTLQQ--QNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKW 446
D +L + D + T + QN LE W +LK++ P+ + ++
Sbjct: 570 GDIALRNGRQPDAESTGEHNGQNVLERWVGFLKSLPTRF--PYASHTEIVYSVQRV---- 623
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
+ V+RDLT+ SFGS+ + + DE +L E
Sbjct: 624 ---GTAVMRDLTMAQGKSFGSWWVTKCWIDEMTCFLAE 658
>gi|170031617|ref|XP_001843681.1| brg-1 associated factor [Culex quinquefasciatus]
gi|167870509|gb|EDS33892.1| brg-1 associated factor [Culex quinquefasciatus]
Length = 149
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 34/38 (89%)
Query: 341 LRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHN 378
LRRYTS NHLAQAARAVLQNSTQI QML LNRVDFH+
Sbjct: 13 LRRYTSSNHLAQAARAVLQNSTQIAQMLNGLNRVDFHH 50
>gi|440803253|gb|ELR24161.1| hypothetical protein ACA1_376210 [Acanthamoeba castellanii str.
Neff]
Length = 1086
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 120/303 (39%), Gaps = 63/303 (20%)
Query: 259 KLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNA 318
+ F L + + + +D++ Y LV +L+PD R + ++S+I ++ +WL NA
Sbjct: 364 RFFSLFQSPIIVHQIVNIDYMLYDALVNMLVPDPFRCVAPEVSSAIIELSRQFPAWLHNA 423
Query: 319 MQ-GCPQEMINIKVTAVGAFAQMLRRYTSLN-------------HLAQAAR--------- 355
+Q P + + K+ AV F + L + ++ HL R
Sbjct: 424 IQFAIPLALTDAKIRAVKYFCKTLHKRAMISNLGGRLTNHLNGLHLTPEKRQRWSSQLQQ 483
Query: 356 ---------AVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASLVQQLESDFK 402
+ +S +ML D +DF + Q S D L L D
Sbjct: 484 QQQHGTHEDSADMSSLSRRRMLQDWMGLDFAFIAAQTSLFDTPDRPYSVPLPSTLLQDIT 543
Query: 403 LTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQ------FLLKWSFYSSMVI 454
L + +E+W+ WL + N + F G+ + A Q F+LKWSF+S+ V
Sbjct: 544 QLLAHEAGVEQWSEWLHGSILANHI---FAGERKESSAKAQGDLIHDFVLKWSFFSANVQ 600
Query: 455 RDLTLRSAASFGSFHL----IRLLYDEYM------------FYLIEHQVALATGETPIAV 498
++LT A + F L + + + +M + HQ +G P +V
Sbjct: 601 QELTSMRAETLKMFRLLFEWVEAVLNHHMELSWKNRGPADAMSAMSHQAMAPSGGPPQSV 660
Query: 499 IGS 501
+GS
Sbjct: 661 VGS 663
>gi|358401234|gb|EHK50540.1| hypothetical protein TRIATDRAFT_83492 [Trichoderma atroviride IMI
206040]
Length = 725
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 128/335 (38%), Gaps = 65/335 (19%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C E+ + F + +PVQ ++ D YQ ++ ++ L+ +P
Sbjct: 348 CREKTFFHLYTSFQGTLTMPVQKLFSNPALAPWIEGCDIALYQRMMRIVSGLTLQVVPKP 407
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ ++R+ ++ + + ++ QG PQ +I K + FA +L R +N A AA +L
Sbjct: 408 VLDTLRSISERLVPHIRDSFQGQPQHVIAAKESPAAIFAGLLDRALRVNLTAHAAANMLS 467
Query: 360 NSTQINQMLTD-LNRVDFHNVQE-------------------------QASWVCQC---- 389
N +QM D + + + E W +C
Sbjct: 468 NPANRDQMYIDWITMIRARKIAECVPTRGMDDVVNLLVTEIRDLLDPANVPWEVECLTIY 527
Query: 390 ---DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKW 446
+ +Q +SD QN L+ W N+L +G P A + W
Sbjct: 528 GDVASRSGRQPDSDGGSDTSGQNVLDRWVNFL-----------QGLPEKFPYASHADIVW 576
Query: 447 SF--YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG-ETPIAVIGSKE 503
+ V+RDLTL SFGS+ + + DE +L E L G +TPI S E
Sbjct: 577 CVERVGTAVMRDLTLAQGKSFGSWWVTKTWVDEMTCFLAEQGGFLKQGAKTPI----SPE 632
Query: 504 SNPVESSQNPMDN--GLYAHGQNNILVHEELHISH 536
++S P Y+ G ++ + HISH
Sbjct: 633 EPQSQASSKPASKQASRYSSGSDDTNL---AHISH 664
>gi|346974263|gb|EGY17715.1| sak1 [Verticillium dahliae VdLs.17]
Length = 795
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 113/278 (40%), Gaps = 50/278 (17%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQAF---------VRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E+ + F + +PVQ + DF+ YQ +++++ L+ +P
Sbjct: 414 CKEKTFFHLYTSFQGTLTMPVQKLLGNASVAPWIEECDFILYQRMMQIVSGLTLQVVPKP 473
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ ++R+ + + + A QG P +I K FA +L R +N A AA +L
Sbjct: 474 VLDTLRSISTRLVPHIREAFQGQPLHVIRAKEAPATVFAALLDRALKVNLTAHAAANMLS 533
Query: 360 NSTQINQMLTD------LNRV----------DFHNV----------QEQASWVCQC---- 389
N +QM D + +V DF N+ + W +C
Sbjct: 534 NPANRDQMYLDWITMVPVRKVAESIPTRGMDDFVNLVVSEIRDLLDPQSVPWEVECLTVY 593
Query: 390 --DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
AS ++ +D QN LE W N+LK++ + P+ + ++
Sbjct: 594 GDLASRKERQLNDNAGESSGQNVLERWVNFLKSLASRF--PYARHADIVYGVQRI----- 646
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEH 485
+ V+RDLT+ SFGS+ + + DE + +L E
Sbjct: 647 --GTAVMRDLTMAQGKSFGSWWVTKCWIDEMISFLAEQ 682
>gi|431895591|gb|ELK05024.1| hypothetical protein PAL_GLEAN10005831 [Pteropus alecto]
Length = 566
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 15/149 (10%)
Query: 226 DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLV 285
+ +E L FW+S E +S + L KC VQ Y+ +
Sbjct: 244 ELERVEDLLTSFWKSLQR------ETVVLMSLPDVCQLFKCYDVQ---------MYKGIE 288
Query: 286 EVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYT 345
+VL+ D L + S+R F+K + WL NA++G P + K+ V F + LRR T
Sbjct: 289 DVLLHDFLEDVSIQYLKSVRLFSKKFKLWLLNALEGFPALLQISKLKEVTVFVKRLRRKT 348
Query: 346 SLNHLAQAARAVLQNSTQINQMLTDLNRV 374
L+++A+ R VL+N+T++N + +DL+ +
Sbjct: 349 YLSNMAKTMRMVLKNNTRVNILKSDLHAI 377
>gi|358389855|gb|EHK27447.1| hypothetical protein TRIVIDRAFT_34449, partial [Trichoderma virens
Gv29-8]
Length = 791
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/333 (21%), Positives = 130/333 (39%), Gaps = 61/333 (18%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C E+ + F + +PVQ ++ D YQ ++ ++ L+ +P
Sbjct: 414 CREKTFFHLYTSFQGTLTMPVQKLFGNPALAPWIEGCDIALYQRMMRIVSGLTLQVVPKP 473
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ ++RN ++ + + ++ QG PQ +I K + FA +L R +N A AA +L
Sbjct: 474 VLDTLRNISERLVPHIRDSFQGQPQHVIAAKESPAAIFASLLDRALRVNLTAHAAANMLS 533
Query: 360 NSTQINQMLTD-LNRVDFHNVQEQ-------------------------ASWVCQC---D 390
N +QM D + + + E W +C
Sbjct: 534 NPANRDQMYVDWITMIRARKIAESVPTRGMDDVVTLLVTEIRDLLDPANVPWEVECLTIY 593
Query: 391 ASLV----QQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKW 446
+V +Q ++D QN L+ W N+L+++ P+ A + W
Sbjct: 594 GDVVTRSGRQSDADAGADTSGQNVLDRWVNFLQSL-----------PSKFPYASHADIVW 642
Query: 447 SF--YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG-ETPIAVIGSKE 503
+ V+RDLTL SFGS+ + + DE +L E + G + PI ++
Sbjct: 643 CVERVGTAVMRDLTLAQGKSFGSWWVTKTWVDEMTCFLAEQGGFMKEGAKAPIP--AAEP 700
Query: 504 SNPVESSQNPMDNGLYAHGQNNILVHEELHISH 536
+ V S Y+ G +++ V H+SH
Sbjct: 701 QSQVSSKPTSRQVSRYSSGSDDVNV---AHVSH 730
>gi|302910717|ref|XP_003050343.1| hypothetical protein NECHADRAFT_49316 [Nectria haematococca mpVI
77-13-4]
gi|256731280|gb|EEU44630.1| hypothetical protein NECHADRAFT_49316 [Nectria haematococca mpVI
77-13-4]
Length = 762
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/277 (20%), Positives = 108/277 (38%), Gaps = 51/277 (18%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQAF---------VRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C E+ + F + +PVQ + DF+ YQ ++ ++ L+ +P
Sbjct: 375 CREKNFFHLYTSFQGTLTMPVQKLFGNPALAPWIEECDFVLYQRMMRIVSGLTLQVVPKP 434
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ ++R ++ + + ++ QG PQ ++ K FA +L R N A AA +L
Sbjct: 435 VLDTLRTISERLVMHIRDSFQGQPQHVVRAKEAPAAIFAGLLDRALRTNLTAHAAANMLS 494
Query: 360 NSTQINQMLTD-LNRVDFHNVQE-------------------------QASWVCQC---- 389
N +QM D + + + E + W +C
Sbjct: 495 NPANRDQMYLDWITMIRPRKLAECVPTRGMDDVVNVLLTEMRDLLDPVKVPWEMECLTIY 554
Query: 390 -DASLVQQLESDFKLTLQQ--QNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKW 446
D S E+D + Q QN L+ W ++L+++ P+ + +
Sbjct: 555 GDISSRSNRETDAEGAATQSGQNVLDRWVDFLRSLPRKF--PYASHADIVSCVERI---- 608
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLI 483
+ V+RDLTL SFGS+ + + DE M +++
Sbjct: 609 ---GTAVMRDLTLSQGKSFGSWWVTKAFLDEMMCFMV 642
>gi|406865846|gb|EKD18887.1| hypothetical protein MBM_03129 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 805
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 122/303 (40%), Gaps = 41/303 (13%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQA---------FVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E+ + F + +PVQ ++ DF+ YQ ++ V+ P L+ P
Sbjct: 424 CKEKTFFHLFTSFHGTLTMPVQKLFANPGIAPWIEECDFVMYQKMMRVVAPLTLQVAPKP 483
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ ++RN ++ + S + + G P +I+ KV FA +L R +N A AA +L
Sbjct: 484 VLDTLRNISERLVSHIQTSFHGHPGHVIDAKVAPATLFAGLLDRELRVNLTAHAAANMLS 543
Query: 360 NSTQINQMLTD-LNRVDFHNVQEQASWVCQCDA----------------------SLVQQ 396
N +QM D + V V E D L
Sbjct: 544 NPANRDQMYEDWITMVRTRKVAECVPTRGMDDVVTLLLSELRDLLDPVGVPWEVEGLTPY 603
Query: 397 LESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSF--YSSMVI 454
E + QQQ S+ ++ +NV++ + + P+ A + W + V+
Sbjct: 604 GEMALRTGRQQQASIHADSS-TENVLDRWVNFLQALPSKFSYATHAEIVWCVQRVGTAVM 662
Query: 455 RDLTLRSAASFGSFHLIRLLYDEYMFYL------IEHQVALATGETPIAVIGSKESNPVE 508
RDLT+ SFG++ + + DE + ++ +E + +T P + ++ N E
Sbjct: 663 RDLTIAQGKSFGAWWVTKCWIDEMIAFMAEQGGFMEFKTTRSTRSQPKQTVATRVVNQHE 722
Query: 509 SSQ 511
SS+
Sbjct: 723 SSR 725
>gi|322705999|gb|EFY97581.1| putative cephalosporin C regulator [Metarhizium anisopliae ARSEF
23]
Length = 777
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 112/281 (39%), Gaps = 55/281 (19%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C E+ + F + +PVQ ++ D++ YQ ++ ++ L+ +P
Sbjct: 394 CREKTFFHLYTSFQGTLTMPVQKLFGHAAIAPWIEGCDYVLYQRMMSIISGLTLQVVPKP 453
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ ++RN ++ + + + QG PQ +++ K + F+ ++ R +N A AA +L
Sbjct: 454 VLDTLRNISERLVPHIRESFQGQPQHVLSAKESPAALFSGLIDRALRVNLTAHAAANMLS 513
Query: 360 NSTQINQMLTD-LNRVDFHNVQE-------------------------QASWVCQC---D 390
N +QM D + + V E W +C
Sbjct: 514 NPANRDQMYVDWITMIRARKVAECVPTRGMDDVVDILVTEMRDLLDPVNVPWEVECLTIY 573
Query: 391 ASLV----QQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKW 446
+V +Q + QN LE W N+L+N+ N F A+ +L W
Sbjct: 574 GDVVTRSGRQTDDGSGANSTGQNVLERWVNFLQNLPN----------KFPYASHTDIL-W 622
Query: 447 SF--YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEH 485
+ V+RDLTL SFGS+ + + DE + +L E
Sbjct: 623 CVERVGTSVMRDLTLAQGKSFGSWWVTKTWVDEMVCFLAEQ 663
>gi|429864000|gb|ELA38390.1| cephalosporin c regulator 1 [Colletotrichum gloeosporioides Nara
gc5]
Length = 762
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 108/279 (38%), Gaps = 51/279 (18%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E+ + F + +PVQ ++ DF+ YQ ++ ++ L+ +P
Sbjct: 381 CKEKTFFHLYTSFQGTLTMPVQKLLGNPALAPWIEECDFILYQRMLRIISGLTLQVVPKP 440
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ ++RN ++ + + +A QG P +I K FA +L R +N A AA +L
Sbjct: 441 VLDTLRNISERLVPHIRDAFQGQPHHVIRAKEAPATIFAALLDRALRVNLTAHAAANMLS 500
Query: 360 NSTQINQMLTD-LNRVDFHNVQE-------------------------QASWVCQC---- 389
N +QM D + V V E W +C
Sbjct: 501 NPANRDQMYLDWITMVRVRKVAECVPTRGMDDLVNLLVSELRDLLNPMNVPWEVECLTVY 560
Query: 390 -DASLV--QQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKW 446
D +L +Q ++ QN LE W +LK++ P+ ++
Sbjct: 561 GDIALRNGRQPGAEGTADANGQNVLERWVGFLKSLPTRF--PYASHTEIVYCVQRV---- 614
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEH 485
+ V+RDLT+ SFGS+ + + DE +L E
Sbjct: 615 ---GTAVMRDLTMAQGKSFGSWWVTKCWIDEMTCFLAEQ 650
>gi|340959813|gb|EGS20994.1| putative specific transcriptional repressor protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 835
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 113/281 (40%), Gaps = 55/281 (19%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQAF---------VRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E+ + F + +PVQ + DF+ YQ +++++ L+ +P
Sbjct: 449 CKEKTFFHLFTSFQGTLTMPVQKLFAHPSVAPWIEECDFILYQRMMKIVSGLTLQVVPKP 508
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ ++RN ++ + S + A QG PQ +I K FA +L R +N A AA +L
Sbjct: 509 VLDTLRNISERLVSHIREAFQGQPQHVIRAKEAPATLFAGLLDRALRVNLTAHAAANMLS 568
Query: 360 NSTQINQMLTD-LNRVDFHNVQE-------------------------QASWVCQC---- 389
N + M + ++ ++ V E W +C
Sbjct: 569 NPANRDLMYMEFISMINVRKVAECIPARGMDDVVNILLNEMRDLLDPVNVPWEIECLTMH 628
Query: 390 -DASLVQQLESDFKLTLQQQNS--LEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKW 446
+ +L + + Q +NS L+ W N+L+++ PN A L W
Sbjct: 629 GEVALRNGKQPQEGVNGQSENSNVLDRWVNFLRSL-----------PNRFPYASATDLVW 677
Query: 447 SF--YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEH 485
+ ++RDLT+ SFGS+ + + DE + ++ E
Sbjct: 678 GVQRLGTAILRDLTIGQGKSFGSWWVTKCWVDEMIQFMAEQ 718
>gi|322699790|gb|EFY91549.1| putative cephalosporin C regulator 1 [Metarhizium acridum CQMa 102]
Length = 776
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 109/281 (38%), Gaps = 55/281 (19%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C E+ + F + +PVQ ++ D++ YQ ++ ++ L+ +P
Sbjct: 394 CREKTFFHLYTSFQGTLTMPVQKLFGHAAIAPWIEGCDYVLYQRMMSIISGLTLQVVPKP 453
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ ++RN ++ + + + QG PQ +++ K F+ ++ R +N A AA +L
Sbjct: 454 VLDTLRNISERLVPHIRESFQGQPQHVLSAKEAPAALFSGLIDRALRVNLTAHAAANMLS 513
Query: 360 NSTQINQMLTD-LNRVDFHNVQE-------------------------QASWVCQC---D 390
N +QM D + + V E W +C
Sbjct: 514 NPANRDQMYVDWITMIRARKVAECVPTRGMDDVVDILVTEMRDLLDPVNVPWEVECLTIY 573
Query: 391 ASLV----QQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKW 446
+V +Q + QN LE W N+L+N+ PN A + W
Sbjct: 574 GDVVTRSGRQTDDGSGANSTGQNVLERWVNFLQNL-----------PNRFPYASHTDIVW 622
Query: 447 SF--YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEH 485
+ V+RDLTL SFGS+ + + DE + +L E
Sbjct: 623 CVERVGTSVMRDLTLAQGKSFGSWWVTKTWVDEMVCFLAEQ 663
>gi|444517440|gb|ELV11563.1| DNA-binding protein RFX8 [Tupaia chinensis]
Length = 384
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 18/160 (11%)
Query: 227 FSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVE 286
F +E+L FW+S + ++ + L KC +Q Y+ + +
Sbjct: 66 FGKVENLLTSFWKSLQQDT------VVLMTVPDVGQLFKCYDIQ---------LYKGIED 110
Query: 287 VLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTS 346
+L+ D L + S+R F+K + WL NA++G P + K+ V F + LRR T
Sbjct: 111 ILLHDFLEDVSIQYLKSVRLFSKRFKLWLLNALEGFPALLQISKLKEVTVFVKRLRRKTY 170
Query: 347 LNHLAQAARAVLQNSTQINQMLTDLNRVDFH---NVQEQA 383
L+++A+ R VL++S +++ + +DL+ V +V EQA
Sbjct: 171 LSNMAKTMRMVLKSSRRVSALKSDLHAVITQGALDVSEQA 210
>gi|440640457|gb|ELR10376.1| hypothetical protein GMDG_00789 [Geomyces destructans 20631-21]
Length = 816
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 104/261 (39%), Gaps = 49/261 (18%)
Query: 259 KLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNA 318
KLF P ++ DF+ YQ ++ +L L +P + ++ ++ + S + +
Sbjct: 453 KLFGHESIAP---WIEECDFIMYQKMIRLLGHLTLEVVPQQILDTLHAISERLVSHIQTS 509
Query: 319 MQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTD-LNRVDFH 377
G P +I+ KV FA +L R +N A AA +L + +QM D ++ V
Sbjct: 510 FHGQPAHVIDAKVAPATLFAGLLDRMCRVNLTAHAAANMLSHPPNRDQMYQDWISMVRLR 569
Query: 378 NVQE-------------------------QASWVCQC-------DASLVQQLESDFKLTL 405
V E +W + A Q ES L
Sbjct: 570 KVAECIPTRAMDDVARLLLTELRDLLDPVTVAWDIESVTPYGDMSARSGNQRESSIHLDS 629
Query: 406 QQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSF--YSSMVIRDLTLRSAA 463
+N L+ W N+L ++ G+ ++ A + W + V+RDLT++S
Sbjct: 630 TTENVLDRWVNFLVSI--------PGRFSYASPAD---IIWCVERVGTAVMRDLTIKSGQ 678
Query: 464 SFGSFHLIRLLYDEYMFYLIE 484
SFGS+ + + DE + ++ E
Sbjct: 679 SFGSWWVTKCWIDEMISFMAE 699
>gi|340514662|gb|EGR44922.1| predicted protein [Trichoderma reesei QM6a]
Length = 785
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 106/280 (37%), Gaps = 55/280 (19%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C E+ + F + +PVQ ++ D YQ ++ ++ L+ +P
Sbjct: 411 CREKTFFHLYTSFQGTLTMPVQKLFGNPALAPWIEGCDIALYQRMMRIVSGLTLQVVPKP 470
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ ++RN ++ + + + QG PQ +I K + FA +L R +N A AA +L
Sbjct: 471 VLDTLRNISERLVPHIRESFQGQPQHVIAAKESPAAIFAALLDRALRVNLTAHAAANMLS 530
Query: 360 NSTQINQMLTD-LNRVDFHNVQE-------------------------QASWVCQC---D 390
N +QM D + + + E W +C
Sbjct: 531 NPANRDQMYVDWITMIRARKIAETVPTRGMDDVVNLLVTEIRDLLDPANVPWEVECLTIY 590
Query: 391 ASLV----QQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKW 446
+V +Q + D QN L+ W N+L+++ P A + W
Sbjct: 591 GDVVTRSGRQSDGDSGADTSGQNVLDRWVNFLQSL-----------PGKFPYASHADIVW 639
Query: 447 SF--YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
+ V+RDLTL SFGS+ + + DE +L E
Sbjct: 640 CVERVGTAVMRDLTLAQGKSFGSWWVTKTWVDEMTCFLAE 679
>gi|390368247|ref|XP_786132.3| PREDICTED: DNA-binding protein RFX6-like, partial
[Strongylocentrotus purpuratus]
Length = 206
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 15/134 (11%)
Query: 219 LDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDF 278
LD I+ F I++ FW+ ++ + + L C+ D
Sbjct: 88 LDTIINSSFDEIQNFLLHFWQGMPDHLLPLLDNPIMID---LICI------------CDS 132
Query: 279 LFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFA 338
+ Y+ ++++LIP ++ +P SL + IR F + E WLT++++ P + K+T F
Sbjct: 133 ILYKTVIDILIPATMQEMPESLLTDIRRFTRQWEIWLTSSLENLPDTLKESKMTVARRFV 192
Query: 339 QMLRRYTSLNHLAQ 352
Q L+R +S HLAQ
Sbjct: 193 QSLKRQSSFLHLAQ 206
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 27/175 (15%)
Query: 107 IPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQ 166
+P+FP D + LP + E VDT +Y+ H + LD I+ F I++ FW+
Sbjct: 53 LPEFP--DAQQMALPFVLSAERVDTLLVMYKTHSQCVLDTIINSSFDEIQNFLLHFWQGM 110
Query: 167 DNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL- 225
++ + + L C+ D + Y+ ++++LIP + +L
Sbjct: 111 PDHLLPLLDNPIMID---LICI------------CDSILYKTVIDILIPATMQEMPESLL 155
Query: 226 -DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFL 279
D W E W + N + +E ++ ++ F VQ+ R+ FL
Sbjct: 156 TDIRRFTRQW-EIWLTSSLENLPDTLKESKMTVARRF-------VQSLKRQSSFL 202
>gi|380487709|emb|CCF37865.1| RFX DNA-binding domain-containing protein [Colletotrichum
higginsianum]
Length = 805
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 106/278 (38%), Gaps = 51/278 (18%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQAF---------VRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E+ + F + +PVQ + DF+ YQ ++ ++ L+ +P
Sbjct: 424 CKEKTFFHLYTSFQGTLTMPVQKLLGHPSLAPWIEECDFILYQRMLRIISGLTLQVVPKP 483
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ ++RN ++ + + A QG P ++ K FA +L R +N A AA +L
Sbjct: 484 VLDTLRNISERLVPHIQEAFQGQPHHVVRAKEAPATMFAALLDRALRVNLTAHAAANMLS 543
Query: 360 NSTQINQMLTD-LNRVDFHNVQE-------------------------QASWVCQC---- 389
N +QM D + V V E W +C
Sbjct: 544 NPANRDQMYLDWITMVRVRKVAECVPTRGMDDLVNLLVSELRDLLSPMNVPWEVECLTVY 603
Query: 390 -DASLV--QQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKW 446
D L +Q+ + QN LE W +LK++ P+ + ++
Sbjct: 604 GDIVLRNGRQVGVESAGEHNGQNVLERWVGFLKSLPTRF--PYASHTEIVYSVQRV---- 657
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
+ V+RDLT+ SFGS+ + + DE +L E
Sbjct: 658 ---GTAVMRDLTMAQGKSFGSWWVTKCWIDEMTSFLAE 692
>gi|346322924|gb|EGX92522.1| cephalosporin C regulator 1 [Cordyceps militaris CM01]
Length = 799
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/333 (21%), Positives = 128/333 (38%), Gaps = 64/333 (19%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C E+ + F + +PVQ ++ D++ YQ ++ ++ L+ +P
Sbjct: 417 CREKTFFHLYTSFQGTLTMPVQKLFSHEAIAPWIEGCDYVLYQRMMRIISGLTLQVVPKP 476
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ ++RN ++ + + + QG PQ +I+ K FA ++ R +N A AA +L
Sbjct: 477 VLDTLRNISERIVPHIRESFQGQPQHVISAKEAPAALFAGLIDRALRVNLTAHAAANMLS 536
Query: 360 NSTQINQMLTD-LNRVDFHNVQE-------------------------QASWVCQC---- 389
N +QM D + + V E W +
Sbjct: 537 NPANRDQMYVDWITMIRARKVAECVPTRGMDDVVDLLVHEMRDLLDPVNVPWEVEVLTIY 596
Query: 390 --DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
AS + E++ QN L+ W N+L+ + P+ A + W
Sbjct: 597 GDAASRNPRQENEGGAASTGQNVLDRWVNFLRVL-----------PSKFPYASHADIVWC 645
Query: 448 F--YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIA-VIGSKES 504
+ V+RD TL SFGS+ + + DE + ++ E + +P A I + +
Sbjct: 646 VERVGTAVMRDFTLSQGKSFGSWWVTKTWVDEMVCFIAEQGGFMKQKASPSAHAIPNAGA 705
Query: 505 NPVESSQNPMDNGLYAHGQNNILVHEELHISHA 537
E+S N Y+H EEL++S +
Sbjct: 706 AGTEAS---CQNSRYSHAS------EELNLSQS 729
>gi|336472421|gb|EGO60581.1| hypothetical protein NEUTE1DRAFT_119738 [Neurospora tetrasperma
FGSC 2508]
Length = 884
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 114/280 (40%), Gaps = 53/280 (18%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQA---------FVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E+ + F + +PVQ ++ DF+ YQ ++ ++ VL+ +P +
Sbjct: 501 CKEKTFFHLYTSFQGTLTMPVQKLFSNPAVAPWIEECDFVLYQRMMRIVSSLVLQVVPKT 560
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ ++RN A + + ++ QG P ++ K FA +L R +N A AA +L
Sbjct: 561 VLDTLRNIADKLVPHIRDSFQGQPPHVLKAKEAPATLFAGLLDRVLRVNLTAHAAANMLS 620
Query: 360 NSTQINQMLTD-LNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWL 418
N + M + +N ++ V E ++ ++ L L++ L + N
Sbjct: 621 NPANRDLMYVEWINIINLRKVAESVP---------LRGMDDVVNLLLREMRDLLDPVNIP 671
Query: 419 KNVVNAVL----------KPFEGKPNFTKAARQFLLKW-SFYSSM--------------- 452
+ L +P G P + A+ L +W SF S+
Sbjct: 672 WEIEGLTLHGEMAMRNGRQPQVGAPEESTAS-NVLDRWVSFLRSLPSHFPYASHTDIVWC 730
Query: 453 -------VIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEH 485
V+RD+TL SFGS+ + + DE + ++ E+
Sbjct: 731 VQRLGTAVMRDITLGQGKSFGSWWVTKCFIDEMILFVAEY 770
>gi|350294355|gb|EGZ75440.1| hypothetical protein NEUTE2DRAFT_83812 [Neurospora tetrasperma FGSC
2509]
Length = 925
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 114/280 (40%), Gaps = 53/280 (18%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQA---------FVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E+ + F + +PVQ ++ DF+ YQ ++ ++ VL+ +P +
Sbjct: 542 CKEKTFFHLYTSFQGTLTMPVQKLFSNPAVAPWIEECDFVLYQRMMRIVSSLVLQVVPKT 601
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ ++RN A + + ++ QG P ++ K FA +L R +N A AA +L
Sbjct: 602 VLDTLRNIADKLVPHIRDSFQGQPPHVLKAKEAPATLFAGLLDRVLRVNLTAHAAANMLS 661
Query: 360 NSTQINQMLTD-LNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWL 418
N + M + +N ++ V E ++ ++ L L++ L + N
Sbjct: 662 NPANRDLMYVEWINIINLRKVAESVP---------LRGMDDVVNLLLREMRDLLDPVNIP 712
Query: 419 KNVVNAVL----------KPFEGKPNFTKAARQFLLKW-SFYSSM--------------- 452
+ L +P G P + A+ L +W SF S+
Sbjct: 713 WEIEGLTLHGEMAMRNGRQPQVGAPEESTAS-NVLDRWVSFLRSLPSHFPYASHTDIVWC 771
Query: 453 -------VIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEH 485
V+RD+TL SFGS+ + + DE + ++ E+
Sbjct: 772 VQRLGTAVMRDITLGQGKSFGSWWVTKCFIDEMILFVAEY 811
>gi|28949939|emb|CAD70925.1| related to cephalosporin C regulator 1 (cpcR1 gene) [Neurospora
crassa]
Length = 899
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 114/280 (40%), Gaps = 53/280 (18%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQA---------FVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E+ + F + +PVQ ++ DF+ YQ ++ ++ VL+ +P +
Sbjct: 516 CKEKTFFHLYTSFQGTLTMPVQKLFSNPAVAPWIEECDFVLYQRMMRIVSSLVLQVVPKT 575
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ ++RN A + + ++ QG P ++ K FA +L R +N A AA +L
Sbjct: 576 VLDTLRNIADKLVPHIRDSFQGQPPHVLKAKEAPATLFAGLLDRVLRVNLTAHAAANMLS 635
Query: 360 NSTQINQMLTD-LNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWL 418
N + M + +N ++ V E ++ ++ L L++ L + N
Sbjct: 636 NPANRDLMYMEWINIINLRKVAESVP---------LRGMDDVVNLLLKEMRDLLDPVNIP 686
Query: 419 KNVVNAVL----------KPFEGKPNFTKAARQFLLKW-SFYSSM--------------- 452
+ L +P G P + A+ L +W SF S+
Sbjct: 687 WEIEGLTLHGEMAMRNGRQPQVGTPEESTAS-NVLDRWVSFLRSLPSHFPYASHTDIVWC 745
Query: 453 -------VIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEH 485
V+RD+TL SFGS+ + + DE + ++ E+
Sbjct: 746 VQRLGTAVMRDITLGQGKSFGSWWVTKCFIDEMILFVAEY 785
>gi|164424726|ref|XP_961016.2| hypothetical protein NCU06701 [Neurospora crassa OR74A]
gi|157070635|gb|EAA31780.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 854
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 113/280 (40%), Gaps = 53/280 (18%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQAF---------VRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E+ + F + +PVQ + DF+ YQ ++ ++ VL+ +P +
Sbjct: 471 CKEKTFFHLYTSFQGTLTMPVQKLFSNPAVAPWIEECDFVLYQRMMRIVSSLVLQVVPKT 530
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ ++RN A + + ++ QG P ++ K FA +L R +N A AA +L
Sbjct: 531 VLDTLRNIADKLVPHIRDSFQGQPPHVLKAKEAPATLFAGLLDRVLRVNLTAHAAANMLS 590
Query: 360 NSTQINQMLTD-LNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWL 418
N + M + +N ++ V E ++ ++ L L++ L + N
Sbjct: 591 NPANRDLMYMEWINIINLRKVAESVP---------LRGMDDVVNLLLKEMRDLLDPVNIP 641
Query: 419 KNVVNAVL----------KPFEGKPNFTKAARQFLLKW-SFYSSM--------------- 452
+ L +P G P + A+ L +W SF S+
Sbjct: 642 WEIEGLTLHGEMAMRNGRQPQVGTPEESTAS-NVLDRWVSFLRSLPSHFPYASHTDIVWC 700
Query: 453 -------VIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEH 485
V+RD+TL SFGS+ + + DE + ++ E+
Sbjct: 701 VQRLGTAVMRDITLGQGKSFGSWWVTKCFIDEMILFVAEY 740
>gi|18307572|dbj|BAB84030.1| transcription factor NYD-sp10 [Macaca fascicularis]
Length = 309
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 32/39 (82%)
Query: 446 WSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
WS + + VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 2 WSCFGTRVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 40
>gi|431914605|gb|ELK15793.1| MHC class II regulatory factor RFX1 [Pteropus alecto]
Length = 102
Score = 58.9 bits (141), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 102 DGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWRE 161
D S ++PDF E+DL LPE D+ F+ +YR+ EA +D +V L F+ +E LW+
Sbjct: 33 DASKSLPDFSELDLQGKVLPEAMEPRDIKAFQVLYRKQHEAIIDIMVNLQFTLVEKLWKT 92
Query: 162 F 162
F
Sbjct: 93 F 93
>gi|408391005|gb|EKJ70389.1| hypothetical protein FPSE_09383 [Fusarium pseudograminearum CS3096]
Length = 762
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 63/309 (20%), Positives = 121/309 (39%), Gaps = 31/309 (10%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E+ + F + +PVQ ++ DF+ YQ +++++ L+ +P
Sbjct: 377 CKEKNFFHLYTSFQGTLTMPVQKLLGNPAMAPWIEACDFVLYQRMMKIVSSLTLQVVPKP 436
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ + R + + + + QG PQ +I K FA +L R +N A AA +L
Sbjct: 437 ILDTFRTISDKLVPHIRESFQGQPQHVIRAKEGPATLFAGLLDRALRVNLTAHAAANMLS 496
Query: 360 NSTQINQMLTD-LNRVDFHNVQEQASWVCQCDA---------SLVQQLESDFKL------ 403
+ NQM +D + + + E D SL+ E ++L
Sbjct: 497 SQDNRNQMFSDWVTMIRLRKIAECVPTRGMDDVVNVLLHEIRSLLDNPEVPWELETITVY 556
Query: 404 -TLQQQNSLEEWANWL---KNVVNAVLKPFEGKPNFTKAARQFLLKWSF--YSSMVIRDL 457
+ NS + N +NV+++ ++ P+ A + W + V+RD+
Sbjct: 557 GEINAGNSRPDNGNTRASGQNVLDSWVEFLRRLPSRFPYASPTEIVWCIERIGTAVMRDI 616
Query: 458 TLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVESSQNPMDNG 517
TL SFG++ + + DE +L E + + I + P + N
Sbjct: 617 TLGGGKSFGAWWVTKTWLDEMTCFLAETGGFMTQRSSHTTGINTAAPPPQTAKDTSRQNS 676
Query: 518 LYAHGQNNI 526
Y+ G + +
Sbjct: 677 RYSSGSDEL 685
>gi|443927318|gb|ELU45822.1| RFX DNA-binding domain-containing protein [Rhizoctonia solani AG-1
IA]
Length = 622
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 82/209 (39%), Gaps = 39/209 (18%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
D ++++ T F E R FW +GD E + V + +
Sbjct: 226 DGLMESVRTFRFDQFEIHLRTFWAGL---SGDHRE------------VVHAPAVAGLMAK 270
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
D ++E+L VL PIP +S+R A +E L A++ + KV
Sbjct: 271 AD-----EILELLRSQVLAPIPPQALTSLRQLADKMEKILLVALENFGSTFVEPKVELGA 325
Query: 336 AFAQMLR------------------RYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFH 377
F ++R R+ + + QA +VL N Q++ M +DF
Sbjct: 326 RFGHLIRKSAPRHALANCSLLSITVRFLDIFQVTQALSSVLTNPKQLSDMRRSWRDIDFE 385
Query: 378 NVQEQASWVCQC-DASLVQQLESDFKLTL 405
+V+ Q++ VC C LVQ LE DF L
Sbjct: 386 SVRNQSALVCNCRHEDLVQLLEVDFTTLL 414
>gi|402891736|ref|XP_003909096.1| PREDICTED: DNA-binding protein RFX8-like, partial [Papio anubis]
Length = 675
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 15/145 (10%)
Query: 230 IESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLI 289
+E L FW+S + +S + L KC VQ Y+ + +VL+
Sbjct: 200 VEDLLTSFWKSLQQDT------VVLMSLPDVCQLFKCYDVQ---------LYKGIEDVLL 244
Query: 290 PDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNH 349
D L + S+R F+K + WL NA++G P + K+ V F + LRR T L++
Sbjct: 245 HDFLEDVSIQYLKSVRLFSKKFKLWLLNAVEGFPALLQISKLKEVTLFVKRLRRKTYLSN 304
Query: 350 LAQAARAVLQNSTQINQMLTDLNRV 374
+A+ R VL++ ++ + +D+ +
Sbjct: 305 MAKTMRTVLKSKRRVGVLKSDVQAI 329
Score = 42.4 bits (98), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 428 PFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
P K F K A F L+W+ + V + +TL SFGS+HL LL EY+ + ++
Sbjct: 474 PSRSKEEFIKLAAGFQLRWNLLLTAVSKAMTLCHRDSFGSWHLFHLLLLEYVIHTLQ 530
>gi|406697417|gb|EKD00677.1| hypothetical protein A1Q2_05037 [Trichosporon asahii var. asahii
CBS 8904]
Length = 964
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/265 (19%), Positives = 111/265 (41%), Gaps = 17/265 (6%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
D + F +S +R FW D+ ++ + S+ PV +
Sbjct: 572 DTLAQCVADHQFDQFDSNYRTFW--------DQTPADQLQAASQ-------PPVSTMMAD 616
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
+ + + + L+ ++L+PI +S+ A + ++ ++ P ++ V
Sbjct: 617 ATAMSFDHCILKLVDNILQPIKPQAHASLSLLALNFGNMVSESLALLPPDVSGPLVELGN 676
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNR-VDFHNVQEQASWVCQCDASLV 394
+Q++ R +L + A +L + + M++ + VD + + +Q + C C +V
Sbjct: 677 HCSQLISRILNLYQITSAINPILSDPDHLATMISSWQQTVDSNYIIKQTAETCDCGEPIV 736
Query: 395 QQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVI 454
+ F+ L + + ++ + V + PN R + K ++ +S V+
Sbjct: 737 EAALLSFQSWLFNLPTCYNTYHPIEKLAEVVDSALDDIPN-ASPRRSIVPKGAYLTSQVM 795
Query: 455 RDLTLRSAASFGSFHLIRLLYDEYM 479
R LTL+S SFG F L++ D+Y+
Sbjct: 796 RLLTLKSDISFGWFQLLKTWIDDYL 820
>gi|410035506|ref|XP_003949920.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein RFX8 [Pan
troglodytes]
Length = 584
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 127/313 (40%), Gaps = 41/313 (13%)
Query: 230 IESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLI 289
+E L FW+S + +S + L KC VQ Y+ + +VL+
Sbjct: 193 VEDLLTSFWKSLQQDT------VMLMSLPDVCQLFKCYDVQ---------LYKGIEDVLL 237
Query: 290 PDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNH 349
D L + S++ F+K + WL +A++G P + K+ V F + LRR T L++
Sbjct: 238 HDFLEDVSIQYLKSVQLFSKKFKLWLLSALEGVPALLQISKLKEVTLFVKRLRRKTYLSN 297
Query: 350 LAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLT----- 404
+A+ R VL++ +++ + +DL + + D S +LE++ ++
Sbjct: 298 MAKTMRMVLKSKRRVSVLKSDLQAIINQGTLATSKKALASDRSGADELENNPEMKCLRNL 357
Query: 405 ---LQQQNSLEEWANWLKNVVNAVL-------KPFEGKPNFTKAARQFLLKWSFYSSMVI 454
L L + + L + + A + + EG A S M
Sbjct: 358 ISLLGTSTDLRVFLSCLSSHLQAFVFQLASGSQRAEGSSGPGGA--------STLGDMKC 409
Query: 455 RDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVESSQNPM 514
+ + GS+HL LL EYM +++ Q L E + KE P + ++
Sbjct: 410 HTVDVTGRKLNGSWHLFHLLLLEYMIHIL--QSCLEEEEEEEDMGNVKEMLPDDPTRGQP 467
Query: 515 DNGLYAHGQNNIL 527
D L+ H N+ L
Sbjct: 468 DQALF-HSLNSSL 479
>gi|156065129|ref|XP_001598486.1| hypothetical protein SS1G_00575 [Sclerotinia sclerotiorum 1980]
gi|154691434|gb|EDN91172.1| hypothetical protein SS1G_00575 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 740
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 105/280 (37%), Gaps = 54/280 (19%)
Query: 283 NLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLR 342
+LVE ++P V+ ++RN + + + + N+ G P +I KV FA +L
Sbjct: 406 SLVEQVVPKVV-------LDTLRNISDRLVTHIQNSFHGQPAHVIEAKVGPATTFASLLD 458
Query: 343 RYTSLNHLAQAARAVLQNSTQINQMLTD-LNRVDFHNVQE-------------------- 381
+ +N A AA +L N + M D + V+ V E
Sbjct: 459 KELRVNLTAHAAANMLSNPFNRDSMYEDFITMVNIRKVAESVPTRGMDDVVHLLITELRD 518
Query: 382 -----QASWVCQCD-------ASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPF 429
+ SW + A + +Q ++ +N L+ W N L ++
Sbjct: 519 LLDPSEVSWEIEGQTPFGEMVARMGRQRQASVHADPTTENVLDRWVNMLLSL-------- 570
Query: 430 EGKPNFTKAARQFLLKWSF--YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQV 487
P A + W + V+RDLT+ SFG++ + + DE + ++ E Q
Sbjct: 571 ---PAKFPYATHAEIVWCVQKIGTAVMRDLTIAQGKSFGAWWVTKCWLDEMIAFMAE-QG 626
Query: 488 ALATGETPIAVIGSKESNPVESSQNPMDNGLYAHGQNNIL 527
E +G NP S +N G Y+ G + L
Sbjct: 627 GFMQREIGQGTMGDMPKNPSASRRNSQQEGRYSSGSDEFL 666
>gi|46126085|ref|XP_387596.1| hypothetical protein FG07420.1 [Gibberella zeae PH-1]
Length = 754
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 109/267 (40%), Gaps = 31/267 (11%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E+ + F + +PVQ ++ DF+ YQ +++++ L+ +P
Sbjct: 369 CKEKNFFHLYTSFQGTLTMPVQKLLGNPAMAPWIEACDFVLYQRMMKIVSSLTLQVVPKP 428
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ + R + + + + QG PQ +I K FA +L R +N A AA +L
Sbjct: 429 ILDTFRTISDKLVPHIRESFQGQPQHVIRAKEGPATLFAGLLDRALRVNLTAHAAANMLS 488
Query: 360 NSTQINQMLTD-LNRVDFHNVQEQASWVCQCDA---------SLVQQLESDFKL------ 403
+ NQM +D + + + E D SL+ E ++L
Sbjct: 489 SQDNRNQMFSDWVTMIRLRKIAECVPTRGMDDVVNVLLHEIRSLLDNPEVPWELETITVY 548
Query: 404 -TLQQQNSLEEWANWL---KNVVNAVLKPFEGKPNFTKAARQFLLKWSF--YSSMVIRDL 457
+ NS + N +NV+++ ++ P+ A + W + V+RD+
Sbjct: 549 GEINTGNSRPDNGNTRASGQNVLDSWVEFLRRLPSRFPYASPTEIVWCIERIGTAVMRDI 608
Query: 458 TLRSAASFGSFHLIRLLYDEYMFYLIE 484
TL SFG++ + + DE +L E
Sbjct: 609 TLGGGKSFGAWWVTKTWLDEMTCFLAE 635
>gi|119622217|gb|EAX01812.1| FLJ42986 protein, isoform CRA_a [Homo sapiens]
Length = 700
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 15/145 (10%)
Query: 230 IESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLI 289
+E L FW+S + +S + L KC VQ Y+ + +VL+
Sbjct: 461 VEDLLTSFWKSLQQDT------VMLMSLPDVCQLFKCYDVQ---------LYKGIEDVLL 505
Query: 290 PDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNH 349
D L + S++ F+K + WL NA++G P + K+ V F + LRR T L++
Sbjct: 506 HDFLEDVSIQYLKSVQLFSKKFKLWLLNALEGVPALLQISKLKEVTLFVKRLRRKTYLSN 565
Query: 350 LAQAARAVLQNSTQINQMLTDLNRV 374
+A+ R VL++ +++ + +DL +
Sbjct: 566 MAKTMRMVLKSKRRVSVLKSDLQAI 590
>gi|50552996|ref|XP_503908.1| YALI0E13596p [Yarrowia lipolytica]
gi|49649777|emb|CAG79501.1| YALI0E13596p [Yarrowia lipolytica CLIB122]
Length = 712
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 103/241 (42%), Gaps = 43/241 (17%)
Query: 269 VQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMIN 328
+Q +V + D++ Y+++V++L P L+ IP + S +++ ++ + +L +++ +
Sbjct: 457 LQPWVAKADWIMYKDMVQMLSPLALQEIPPQVLSGLKSLSQYLPEYLKSSLCKTSPGFVE 516
Query: 329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQ 388
K+ AFA +L R ++ LA A +L +D +R N W+
Sbjct: 517 TKLKPARAFASLLMRLVRVSELALNAGKLLA---------SDHDRAVMKN-----DWIKY 562
Query: 389 CDASLV-------------QQLESDFKLTLQQQNSL-----EEWANWLKNVVNAVLKPFE 430
D+ L+ + L+ D L ++ + E WA +L + +
Sbjct: 563 VDSGLIVARDVPCSSQEVTKILDVDLPQLLDYKDPVASAIVEHWAMYLMTLPS------- 615
Query: 431 GKPNFTKA-ARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAL 489
FT FLL + + +R++ L FG++ ++R DE+M + E L
Sbjct: 616 ---RFTNVYPHMFLLYMNAVFTAALREIFLNGGDGFGAWMVVRCWVDEWMGWTAEQGTFL 672
Query: 490 A 490
+
Sbjct: 673 S 673
>gi|400596074|gb|EJP63858.1| RFX DNA-binding domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 796
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/279 (20%), Positives = 105/279 (37%), Gaps = 54/279 (19%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C E+ + F + +PVQ ++ D++ YQ ++ ++ L+ +P
Sbjct: 416 CREKTFFHLYTSFQGTLTMPVQRLFSHEALAPWIEGCDYVLYQRMMRIISGLTLQVVPKP 475
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ ++RN ++ + + + QG PQ + K FA ++ R +N A AA +L
Sbjct: 476 VLDTLRNISERIVPHIRESFQGQPQHVTAAKEAPAALFAGLIDRALRVNLTAHAAANMLS 535
Query: 360 NSTQINQMLTD-LNRVDFHNVQE-------------------------QASWVCQC---- 389
N +QM D + + V E W +
Sbjct: 536 NPANRDQMYVDWITMIRARKVAECVPTRGMDDVVDLLVNEMRDLLDPVNVPWEVEVLTIY 595
Query: 390 --DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
AS + ++ QN L+ W N+L+ + P+ A + W
Sbjct: 596 GDAASRNPRQANEGGAASTGQNVLDRWVNFLRLL-----------PSRFAYASHADIVWC 644
Query: 448 F--YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
+ V+RDLTL SFGS+ + + DE + ++ E
Sbjct: 645 VERVGTAVMRDLTLSQGKSFGSWWVTKTWVDEMVCFIAE 683
>gi|401885908|gb|EJT49987.1| hypothetical protein A1Q1_00828 [Trichosporon asahii var. asahii
CBS 2479]
Length = 988
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/265 (19%), Positives = 112/265 (42%), Gaps = 17/265 (6%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 275
D + F +S +R FW D+ ++ + S+ PV +
Sbjct: 596 DTLAQCVADHQFDQFDSNYRTFW--------DQTPADQLQAASQ-------PPVSTMMAD 640
Query: 276 VDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVG 335
+ + + + L+ ++L+PI +S+ A + ++ ++ P ++ V
Sbjct: 641 ATAMSFDHCILKLVDNILQPIKPQAHASLSLLALKFGNMVSESLALLPPDVSGPLVELGN 700
Query: 336 AFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNR-VDFHNVQEQASWVCQCDASLV 394
+Q++ R +L + A +L + + M++ + VD + + +Q + C C +V
Sbjct: 701 HCSQLISRILNLYQITSAISPILSDPDHLATMISSWQQTVDSNYIIKQTAETCDCGEPIV 760
Query: 395 QQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVI 454
+ F+ L + + ++ + V + PN + R + K ++ +S V+
Sbjct: 761 EAALLSFQSWLFNLLTCYNTYHPIEKLAEVVDSALDDIPNASPR-RSIVPKGAYLTSQVM 819
Query: 455 RDLTLRSAASFGSFHLIRLLYDEYM 479
R LTL+S SFG F L++ D+Y+
Sbjct: 820 RLLTLKSDISFGWFQLLKTWIDDYL 844
>gi|449674121|ref|XP_002167174.2| PREDICTED: DNA-binding protein RFX6-like, partial [Hydra
magnipapillata]
Length = 204
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 25/141 (17%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
GNSKYHYYG+ +K S + S G R KL+ +D+ S + S
Sbjct: 66 GNSKYHYYGVAIKESSKYYHTVYSGI-GLTRFSGSKLLSSDNASRKILS----------- 113
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIV 148
+ +SG+ +PDFP + LP +DTF +YR HC+ LD V
Sbjct: 114 --AAKSGS---------LLPDFPSPH--QLHLPYHVETCKLDTFMVMYRTHCQCLLDTAV 160
Query: 149 TLDFSTIESLWREFWRSQDNN 169
++ I FW+ N+
Sbjct: 161 AKNYEAIHQYLVHFWQGIPNH 181
>gi|116199217|ref|XP_001225420.1| hypothetical protein CHGG_07764 [Chaetomium globosum CBS 148.51]
gi|88179043|gb|EAQ86511.1| hypothetical protein CHGG_07764 [Chaetomium globosum CBS 148.51]
Length = 832
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/305 (20%), Positives = 120/305 (39%), Gaps = 61/305 (20%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E+ + F + +PVQ ++ DF+ YQ ++ ++ L+ +P
Sbjct: 454 CKEKAFFHLFTSFQGTLTMPVQKLFANPAIAPWIEESDFVLYQRMMRIVSGLTLQVVPKP 513
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ ++RN ++ + + + QG P ++ K FA +L R +N A AA +L
Sbjct: 514 VLDTLRNISERLVPHIRESFQGQPLHVVRAKEGPATIFAGLLDRALRVNLTAHAAANMLS 573
Query: 360 NSTQINQMLTDLNRVDFHNVQEQAS----------------------------WVCQCDA 391
N N+ L + + NV++ A W +C
Sbjct: 574 NPA--NRDLMYMEWISMVNVKKLAECIPSRGMDDVVNLLLNEMRDLLSPVNIPWEMECLT 631
Query: 392 SLVQQLESDFKLT-------LQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLL 444
S + + + + + N L+ W N L+++ P+ A L
Sbjct: 632 SQGDVVIRNGRPSQDGGFEEVDSSNVLDRWVNLLRSL-----------PSRFPYASDTDL 680
Query: 445 KWSF--YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAL--ATGETPIAVIG 500
W S+ ++RDLT+ SFGS+ + + DE + ++ E L + + P+A+
Sbjct: 681 VWCVQRLSTALMRDLTIAQGKSFGSWWVTKCWVDEMIQFMAEQGGFLQQKSSQAPLAIPK 740
Query: 501 SKESN 505
+ +N
Sbjct: 741 RQSAN 745
>gi|448112442|ref|XP_004202097.1| Piso0_001573 [Millerozyma farinosa CBS 7064]
gi|359465086|emb|CCE88791.1| Piso0_001573 [Millerozyma farinosa CBS 7064]
Length = 785
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 103/229 (44%), Gaps = 10/229 (4%)
Query: 259 KLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNA 318
KL+ +P +V + D + Y+ +++++ + +P + ++ + L+++
Sbjct: 480 KLYTHESMLP---WVVQCDSIMYRAMIKLITKLQHQTVPSEVLLQLKYISSNYLDRLSSS 536
Query: 319 MQG-CPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFH 377
+Q P+E + +K+ +F +L R + + NS + ML D ++D +
Sbjct: 537 LQNKVPREFMKMKLNLAKSFLSILNRLIKVIETGAVVSKIFSNSAEKQNMLNDWMKLDIN 596
Query: 378 NVQ-EQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFT 436
+ + + +L++ L SDF L L +S E L N L K F
Sbjct: 597 EIVFREVPCSKENVETLLKVLNSDF-LDLFNDSSQESLQPSLVRCSN-FLADLPSK--FA 652
Query: 437 KA-ARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
K R F L S + + +R+++LR SFG++ ++R DEY+ + E
Sbjct: 653 KVNPRLFTLVLSNFLTACLREISLRGGQSFGAWWMLRCWVDEYINWCFE 701
>gi|226290570|gb|EEH46054.1| DNA damage and replication checkpoint protein Rfx1
[Paracoccidioides brasiliensis Pb18]
Length = 877
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E+ +L F + VPV ++R D+L Y+ ++ + P + +P
Sbjct: 449 CKEKNFLRHFSSFQGTLTVPVHKVLTLPEVAPWIRECDWLMYKKMIAFVAPLTTQVVPEP 508
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ ++ ++ +KG+ +++ +M+ P + +++ F +L+R +N A AA A L
Sbjct: 509 VLNAFKSISKGLVTYVQKSMKSHPDHVAEARLSPARVFCHLLKRMLDVNQSAIAASAWLS 568
Query: 360 NSTQINQMLTDL 371
++ +M D
Sbjct: 569 HADNRTRMWQDF 580
>gi|225678373|gb|EEH16657.1| RFX family DNA-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 830
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E+ +L F + VPV ++R D+L Y+ ++ + P + +P
Sbjct: 400 CKEKNFLRHFSSFQGTLTVPVHKVLTLPEVAPWIRECDWLMYKKMIAFVAPLTTQVVPEP 459
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ ++ ++ +KG+ +++ +M+ P + +++ F +L+R +N A AA A L
Sbjct: 460 VLNAFKSISKGLVTYVQKSMKSHPDHVAEARLSPARVFCHLLKRMLDVNQSAIAASAWLS 519
Query: 360 NSTQINQMLTDL 371
++ +M D
Sbjct: 520 HADNRTRMWQDF 531
>gi|260784228|ref|XP_002587170.1| hypothetical protein BRAFLDRAFT_98859 [Branchiostoma floridae]
gi|229272309|gb|EEN43181.1| hypothetical protein BRAFLDRAFT_98859 [Branchiostoma floridae]
Length = 550
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 64/157 (40%), Gaps = 26/157 (16%)
Query: 9 GIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKT 68
G + P P I S + YHYYGI +K S + S G R K +KT
Sbjct: 10 GEQTDPAEPAPEIKQSQISATLRWYHYYGIGIKETSIYYHSVYSGR-GLTRFSGIK-IKT 67
Query: 69 DSNSNQYGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIED 128
+ +S +Y T +PDFP D LP+D +
Sbjct: 68 EGSSRKYSLSSKT----------------------GTLLPDFP--DSQNLVLPDDVDRDK 103
Query: 129 VDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRS 165
V+TF +YR HC+ LD +++ +F +++ FW+
Sbjct: 104 VETFIMMYRTHCQRILDTVISANFDEVQNFLLHFWQG 140
>gi|406605126|emb|CCH43419.1| hypothetical protein BN7_2967 [Wickerhamomyces ciferrii]
Length = 821
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 67/322 (20%), Positives = 133/322 (41%), Gaps = 57/322 (17%)
Query: 202 DFLFYQNLVEVL---IPDA-----------FLDAIVTLDFS-TIESLWREFWRSQDNNNG 246
+ F NL+E L +PD+ FL +D + T+ L++ S
Sbjct: 407 ELKFVPNLIESLSNQVPDSDKPLLLPQIRPFLPPSTDMDIADTLYGLYKSHCTSV----- 461
Query: 247 DECEEEKYLSKSKLFCL------SKCVPV---------QAFVRRVDFLFYQNLVEVLIPD 291
E +Y+ KLF L S PV ++ D + Y+ ++++L
Sbjct: 462 --FESLRYMQLKKLFSLLSSFHGSLTSPVLKLYVSPSLHNWIIASDSIMYKEIIKMLANL 519
Query: 292 VLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLA 351
L+ IP + ++ A+ + ++Q P ++ K+ F+Q++ + + A
Sbjct: 520 ALQDIPTHVLQQLKQVAENFTEKSSTSLQNLPVKLAVAKLKLSKEFSQLVSKLIRVAETA 579
Query: 352 QAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSL 411
Q+A VL S ++ L + + F +V++ AS C+ ++Q K L + ++
Sbjct: 580 QSANKVL--SHDFDRELMEKDWTKFVDVEQIASKELPCNGENLKQAIEVLKNKLPELLNI 637
Query: 412 E---------EWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSA 462
E EWA ++ + + + R FLL S + +R+++L
Sbjct: 638 ETESRDTIINEWALFISELPHKFID---------VPPRLFLLCVSTILTSALREISLAGG 688
Query: 463 ASFGSFHLIRLLYDEYMFYLIE 484
A FG++ ++R DE++ + E
Sbjct: 689 AGFGAWWVVRCWIDEWVGWCAE 710
>gi|367024739|ref|XP_003661654.1| hypothetical protein MYCTH_2301302 [Myceliophthora thermophila ATCC
42464]
gi|347008922|gb|AEO56409.1| hypothetical protein MYCTH_2301302 [Myceliophthora thermophila ATCC
42464]
Length = 834
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 107/276 (38%), Gaps = 45/276 (16%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E+ + F + +PVQ ++ DF+ YQ ++ ++ L+ +P
Sbjct: 456 CKEKAFFHLFTSFQGTLTMPVQKLFANPAIAPWIEECDFVLYQRMMRIVSGLTLQVVPKP 515
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ ++RN ++ + + + QG P ++ K FA +L R +N A AA +L
Sbjct: 516 VLDTLRNISERLVPHIRESFQGQPLHVVKAKEAPATIFAGLLDRALRVNLTAHAAANMLS 575
Query: 360 NSTQINQMLTDLNRVDFHNVQEQAS----------------------------WVCQCDA 391
N N+ L + + NV++ A W +C
Sbjct: 576 NPA--NRDLMYMEWITMINVRKLAESIPSRGMDDVVNLLLNEMRDLLNPVNVPWEMECLT 633
Query: 392 SLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSF--Y 449
+ + K + N E +N L VN + P+ A L W
Sbjct: 634 VQGEIAMRNGKAPPEGDNEDAESSNVLDRWVNLL----RSLPSRFPYASDTDLVWCVQRL 689
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEH 485
S+ ++RDLT+ SFGS+ + + DE + ++ E
Sbjct: 690 STALMRDLTIGQGKSFGSWWVTKCWIDEMIQFMAEQ 725
>gi|295674791|ref|XP_002797941.1| DNA damage and replication checkpoint protein Rfx1
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226280591|gb|EEH36157.1| DNA damage and replication checkpoint protein Rfx1
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 895
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 62/132 (46%), Gaps = 9/132 (6%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E+ +L F + VPV ++R D+L Y+ ++ + P + +P
Sbjct: 461 CKEKNFLRHFSSFQGTLTVPVHKVLTLPEVAPWIRECDWLMYKKMIAFVAPLTTQVVPEP 520
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ ++ ++ +KG+ +++ +M+ P + ++ F +L+R +N A AA A L
Sbjct: 521 VLNAFKSISKGLVTYVQKSMKSHPDHVAEARLRPARVFCHLLKRMLDVNQSAIAASAWLS 580
Query: 360 NSTQINQMLTDL 371
++ +M D
Sbjct: 581 HADNRTRMWQDF 592
>gi|345560100|gb|EGX43228.1| hypothetical protein AOL_s00215g602 [Arthrobotrys oligospora ATCC
24927]
Length = 757
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/230 (20%), Positives = 95/230 (41%), Gaps = 29/230 (12%)
Query: 272 FVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKV 331
+V D+ Y+ L+ ++ V IP + + ++ + ++Q P ++ ++
Sbjct: 466 WVEDTDWEIYKELLGLVNNCVKTAIPPKIFEQFKKLVHNLDESVRKSLQPLPDHVVEARL 525
Query: 332 TAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTD-LNRVDFHNVQEQASWVCQCD 390
V AF +++ + N AA ++L N + M +D +N V+ + + C
Sbjct: 526 RPVSAFCRLVDQALRTNMTCHAAASILNNDADVKTMESDWVNMVEAERIVRRE---LPCR 582
Query: 391 ASLVQQLESDFKLTL---QQQNSL-------------EEWANWLKNVVNAVLKPFEGKPN 434
+ L QL ++L ++ NS+ + W WL + + +
Sbjct: 583 SPLAIQLLRTEIVSLVRGKEPNSMPTSQDGPDENGIFDHWVRWLDRLPSRFPE------- 635
Query: 435 FTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
+AR L+ S +S IRD+TL FG + ++ +EY+ + E
Sbjct: 636 --VSARSILIGTSAVASAAIRDITLSGGEGFGGWWVLVTFVEEYLRWNAE 683
>gi|302416773|ref|XP_003006218.1| sak1 [Verticillium albo-atrum VaMs.102]
gi|261355634|gb|EEY18062.1| sak1 [Verticillium albo-atrum VaMs.102]
Length = 589
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 66/152 (43%), Gaps = 13/152 (8%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQAF---------VRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E+ + F + +PVQ + DF+ YQ +++++ L+ +P
Sbjct: 414 CKEKTFFHLYTSFQGTLTMPVQKLLGNASVAPWIEECDFILYQRMMQIVSGLTLQVVPKP 473
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ ++R+ + + + A QG P +I K FA +L R +N A AA +L
Sbjct: 474 VLDTLRSISTRLVPHIREAFQGQPLHVIRAKEAPATVFAALLDRALKVNLTAHAAANMLS 533
Query: 360 NSTQINQM----LTDLNRVDFHNVQEQASWVC 387
N +QM +T + + N ++A W
Sbjct: 534 NPANRDQMYLDWITMVPVRKWRNQSQRAGWTT 565
>gi|402078839|gb|EJT74104.1| hypothetical protein GGTG_07952 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 829
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 116/292 (39%), Gaps = 59/292 (20%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQAF---------VRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E+ + F + +PVQ + DF+ YQ ++ +L L+ +P
Sbjct: 435 CKEKTFFHLYTSFQGTLTMPVQKLFSNPAIAPWIEECDFVLYQRMMRILSGLTLQVVPKP 494
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ +IR+ ++ + + + QG P ++ K FA +L R +N A AA +L
Sbjct: 495 VLDTIRSISERLVGHIRESFQGQPAHVVRAKEAPAALFAALLDRELRVNLTAHAAANMLS 554
Query: 360 NSTQINQMLTD-LNRVDFHNVQEQASWVCQCDASLVQQLESDFK--------------LT 404
N +QM D + V V E S + +V + ++ + LT
Sbjct: 555 NPANRDQMYLDWITMVQTRKVAE--SIPSRAMDEVVNIMLTEIRDLLDPANVPWEMEALT 612
Query: 405 LQQQ--------------------NSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLL 444
L + + LE WA++L+++ + F AA ++
Sbjct: 613 LHGEVTARSGRQSQPISLEEAGASSVLERWASFLRSLPD----------RFPYAAHTDIV 662
Query: 445 KWSF--YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGET 494
W S V+RDLT+ SFGS+ + + DE + +L E LA T
Sbjct: 663 -WCVDRLGSAVMRDLTISQGKSFGSWWVTKCWIDEMVSFLAEQGGFLAMKST 713
>gi|448114991|ref|XP_004202721.1| Piso0_001573 [Millerozyma farinosa CBS 7064]
gi|359383589|emb|CCE79505.1| Piso0_001573 [Millerozyma farinosa CBS 7064]
Length = 785
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/234 (20%), Positives = 104/234 (44%), Gaps = 20/234 (8%)
Query: 259 KLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNA 318
KL+ +P +V + D + Y+ + +++ + +P + ++ + L+++
Sbjct: 480 KLYTHESMLP---WVVQCDSIMYRAMTKLITKLQHQTVPSEVLLQLKYISSNYLDRLSSS 536
Query: 319 MQG-CPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFH 377
+Q P+E + +K+ AF +L R + + N+ + ML D ++D +
Sbjct: 537 LQNKVPREFMKMKLNLAKAFLSILNRLIKVIETGAVVSKIFNNAAEKQNMLNDWMKLDIN 596
Query: 378 NVQ-EQASWVCQCDASLVQQLESDF-----KLTLQQ-QNSLEEWANWLKNVVNAVLKPFE 430
+ + + +L++ L SDF L+ + Q SL +N+L ++ + K
Sbjct: 597 EIVFREVPCSKENVETLLKVLTSDFLDLFNDLSQESLQPSLVRCSNFLADLPSKFAK--- 653
Query: 431 GKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
R F L S + + +R+++LR SFG + ++R DEY+ + E
Sbjct: 654 ------VNPRLFTLVLSNFLTACLREISLRGGQSFGVWWMLRCWVDEYINWCFE 701
>gi|171692829|ref|XP_001911339.1| hypothetical protein [Podospora anserina S mat+]
gi|170946363|emb|CAP73164.1| unnamed protein product [Podospora anserina S mat+]
Length = 761
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/277 (17%), Positives = 106/277 (38%), Gaps = 50/277 (18%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQAF---------VRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E+ + F + +PVQ + DF+ YQ ++ ++ L+ +P
Sbjct: 381 CKEKTFFHLFTSFQGTLTMPVQKLFSHPAIAPWIEECDFILYQRMMRIVSGLTLQVVPKP 440
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ ++R+ ++ + + + G P ++ K FA +L R +N A AA +L
Sbjct: 441 VLDTLRSISERLVRHIRESFHGQPAHVLRAKEAPAALFAGLLDRALRVNLTAHAAANMLS 500
Query: 360 NSTQINQMLTD-LNRVDFHNVQEQ-------------------------ASWVCQCDA-- 391
N + M + ++ ++ + E W +C
Sbjct: 501 NPANRDLMYAEFISMINVRKISESIPSRGMDDVVNVLLTEMRHLLDPVNVPWDIECLTVH 560
Query: 392 ----SLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
+Q + + N L+ W N+L+++ P+ + A++
Sbjct: 561 GDVPPQSRQSQEAVQDDTSASNVLDRWVNFLRSLPARF--PYASATDVVWCAQRL----- 613
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
+ ++RDLT+ SFGS+ + + DE + ++ E
Sbjct: 614 --GTALMRDLTIGQGKSFGSWWVTKCWLDEMVEFMAE 648
>gi|355734212|gb|AES11279.1| hypothetical protein [Mustela putorius furo]
Length = 97
Score = 50.1 bits (118), Expect = 0.003, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 43/68 (63%)
Query: 307 FAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQ 366
F+K + WL NA++G P + K+ V F + LRR T L+++A+ R VL+N+ ++N
Sbjct: 2 FSKKFKLWLLNALEGFPALVQISKLKEVTVFVKRLRRKTYLSNMAKTMRMVLKNNRRVNV 61
Query: 367 MLTDLNRV 374
+ +DL+ +
Sbjct: 62 LKSDLHAI 69
>gi|344236196|gb|EGV92299.1| Uncharacterized protein FLJ42986 [Cricetulus griseus]
Length = 177
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 277 DFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGA 336
D ++ L + L+PD L + S+R F+K + WL +A++G P + K+ V
Sbjct: 63 DMQLFKGLEDALLPDFLEDVSIQYLKSVRLFSKRFKLWLLSALEGFPAILQISKLKEVTG 122
Query: 337 FAQMLRRYTSLNHLAQAAR 355
F + LRR T L+++A+ R
Sbjct: 123 FVKRLRRKTYLSNMAKEGR 141
>gi|350579267|ref|XP_003353577.2| PREDICTED: transcription factor RFX3-like, partial [Sus scrofa]
Length = 325
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/21 (90%), Positives = 20/21 (95%)
Query: 1 GNSKYHYYGIRVKPDSPLNNI 21
GNSKYHYYGIRVKPDSPLN +
Sbjct: 287 GNSKYHYYGIRVKPDSPLNRL 307
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/21 (90%), Positives = 20/21 (95%)
Query: 29 GNSKYHYYGIRVKPDSPLNNI 49
GNSKYHYYGIRVKPDSPLN +
Sbjct: 287 GNSKYHYYGIRVKPDSPLNRL 307
>gi|19114998|ref|NP_594086.1| transcriptional repressor Sak1 [Schizosaccharomyces pombe 972h-]
gi|6174972|sp|P48383.2|SAK1_SCHPO RecName: Full=Protein sak1
gi|2706465|emb|CAA15923.1| transcriptional repressor Sak1 [Schizosaccharomyces pombe]
Length = 766
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/234 (20%), Positives = 98/234 (41%), Gaps = 23/234 (9%)
Query: 272 FVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKV 331
++ R D + Y+ ++++L P L+ +P + +R+ A+ + + +++ ++ +K
Sbjct: 443 WIERSDTVMYREILKLLFPMTLQVVPPPVLVLLRHLAENLVNHISSIYASHSSCLLQVKS 502
Query: 332 TAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRV--------------DFH 377
F+ +L R +N A AA L N + + D R D
Sbjct: 503 ETAAIFSNLLSRLLRVNDTAHAAARFLANPADRHLICNDWERFVSTRFIVHRELMCNDKE 562
Query: 378 NVQEQASW-----VCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
V W C + L+ L+ + + N +E + V++ + F
Sbjct: 563 AVAALDEWYSILSTCSNPSELLDPLKDKHEASDTSMNRVE--LRQIDGVLDRMADFFLEL 620
Query: 433 PNF--TKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
P+ + + R FLL + V+R++T+ +FG+ +IR DEYM ++ E
Sbjct: 621 PSRFPSCSPRMFLLCLGALQTSVLREITVSGGEAFGALWVIRCWVDEYMTWVAE 674
>gi|367037603|ref|XP_003649182.1| hypothetical protein THITE_2107553 [Thielavia terrestris NRRL 8126]
gi|346996443|gb|AEO62846.1| hypothetical protein THITE_2107553 [Thielavia terrestris NRRL 8126]
Length = 800
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/278 (18%), Positives = 114/278 (41%), Gaps = 49/278 (17%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E+ + F + +PVQ ++ DF+ YQ ++ ++ +L+ +P
Sbjct: 420 CKEKTFFHLFTSFQGTLTMPVQKLFANPAIAPWIEECDFILYQRMMRIVSGLILQVLPKP 479
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRR---------------- 343
+ ++RN ++ + + ++ QG P ++ K FA +L R
Sbjct: 480 VLETLRNISERLVPHIRDSFQGQPPHVVRAKEAPATIFAGLLDRALRVNLAAHAAANMLA 539
Query: 344 -----------YTSLNHLAQAARAVLQNSTQ--INQMLTDL-NRVDFHNVQEQASWVCQC 389
+ ++ ++ + A AV +N ++ ++ + +D N+ W +C
Sbjct: 540 NPANRDLMYMEWITIINVRKIAEAVPSRGMDDVVNVLINEMRDLIDPVNI----PWELEC 595
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSF- 448
+ + + + N + + L VN L+ G+ + A L W
Sbjct: 596 LTVYGEVAMRNGRQPQEGSNDESDSSKLLDRWVN-FLRTLPGRFPYASATD---LVWCVQ 651
Query: 449 -YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEH 485
++++RDLT+ A SFGS+ + + DE + ++ EH
Sbjct: 652 RVGTVLMRDLTISGAKSFGSWWVTKCWIDEMIQFMAEH 689
>gi|260785956|ref|XP_002588025.1| hypothetical protein BRAFLDRAFT_83002 [Branchiostoma floridae]
gi|229273182|gb|EEN44036.1| hypothetical protein BRAFLDRAFT_83002 [Branchiostoma floridae]
Length = 957
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 107 IPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRS 165
+PDFP D LP+D + V+TF +YR HC+ LD +++ +F +++ FW+
Sbjct: 90 LPDFP--DSQNLVLPDDVDRDKVETFIMMYRTHCQRILDTVISANFDEVQNFLLHFWQG 146
>gi|395754944|ref|XP_002832627.2| PREDICTED: DNA-binding protein RFX8-like [Pongo abelii]
Length = 242
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 355 RAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLT--------LQ 406
R VL++ +++ + +DL + + D S +LE++ ++ L
Sbjct: 2 RMVLKSKRRVSVLKSDLQAIINQGTLATSKKALASDRSGADELENNPEMKCLRNLISLLG 61
Query: 407 QQNSLEEWANWLKNVVNA-VLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASF 465
L + + L + + A V +P K F K A F L+W+ + V + +TL SF
Sbjct: 62 TSTDLRVFLSCLSSHLQAFVFQPSRSKEEFIKLAASFQLRWNLLLTAVSKAMTLCHGDSF 121
Query: 466 GSFHLIRLLYDEYMFYLIE 484
GS+HL LL EY+ ++++
Sbjct: 122 GSWHLFHLLLLEYVIHILQ 140
>gi|452422|emb|CAA53704.1| DNA binding protein RFX3 [Mus musculus]
Length = 189
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/21 (90%), Positives = 20/21 (95%)
Query: 1 GNSKYHYYGIRVKPDSPLNNI 21
GNSKYHYYGIRVKPDSPLN +
Sbjct: 109 GNSKYHYYGIRVKPDSPLNRL 129
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/21 (90%), Positives = 20/21 (95%)
Query: 29 GNSKYHYYGIRVKPDSPLNNI 49
GNSKYHYYGIRVKPDSPLN +
Sbjct: 109 GNSKYHYYGIRVKPDSPLNRL 129
>gi|407916516|gb|EKG09884.1| DNA-binding RFX [Macrophomina phaseolina MS6]
Length = 731
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 69/307 (22%), Positives = 124/307 (40%), Gaps = 35/307 (11%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQAF---------VRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E+++ F + VPVQ +R D+L YQ ++ + L+ P
Sbjct: 330 CKEKQFFRLFTSFHGTLTVPVQKLLAHPNMAPWIRECDWLMYQKMIRFVSRLTLQVTPPV 389
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ + + N ++ + ++ QG P ++ ++ FAQ+L R N A AA A+L
Sbjct: 390 VLNFLNNISRELHKHISKTFQGHPLHVLEARLEPATLFAQLLHRMLRANQAAHAAAALLM 449
Query: 360 NSTQINQMLTD-LNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNS---LEEWA 415
NQM D + V+ V E C + + + L D + LQ ++ LE
Sbjct: 450 IDQNRNQMWMDWVTYVNPKRVMESELPNCGYEEAY-RILTQDVRSLLQPLSTPVWLENGT 508
Query: 416 NWLKNVVNAVLK----PFEGKPNFTKAA---------------RQFLLKWSFYSSMVIRD 456
++ + + A + P + + A R L S + R+
Sbjct: 509 HYQEAALQAAKQHGDSPITNETVIDRLAHFLSNLATRFPHADTRTLLHCISAVGTAACRE 568
Query: 457 LTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVESS-QNPMD 515
+T+ + ASF + + ++ DE +L LA P+ S + +P+E S N M+
Sbjct: 569 ITVENGASFSPWWITKVFVDELSLWLASLGGFLAH-RPPMHKHMSPQVSPMEGSLDNRME 627
Query: 516 NGLYAHG 522
NG G
Sbjct: 628 NGGAVRG 634
>gi|194380922|dbj|BAG64029.1| unnamed protein product [Homo sapiens]
Length = 247
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 27/125 (21%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 132 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 175
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 176 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 225
Query: 148 VTLDF 152
+ +F
Sbjct: 226 IRANF 230
>gi|119622218|gb|EAX01813.1| FLJ42986 protein, isoform CRA_b [Homo sapiens]
Length = 302
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 83/186 (44%), Gaps = 12/186 (6%)
Query: 351 AQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLT------ 404
++ R VL++ +++ + +DL + + D S +LE++ ++
Sbjct: 15 SKTMRMVLKSKRRVSVLKSDLQAIINQGTLATSKKALASDRSGADELENNPEMKCLRNLI 74
Query: 405 --LQQQNSLEEWANWLKNVVNA-VLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRS 461
L L + + L + + A V + K FTK A F L+W+ + V + +TL
Sbjct: 75 SLLGTSTDLRVFLSCLSSHLQAFVFQTSRSKEEFTKLAASFQLRWNLLLTAVSKAMTLCH 134
Query: 462 AASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVESSQNPMDNGLYAH 521
SFGS+HL LL EYM ++++ + E + + KE P + + D L+ H
Sbjct: 135 RDSFGSWHLFHLLLLEYMIHILQSCLEEEEEEEDMGTV--KEMLPDDPTLGQPDQALF-H 191
Query: 522 GQNNIL 527
N+ L
Sbjct: 192 SLNSSL 197
>gi|150866092|ref|XP_001385574.2| hypothetical protein PICST_78645 [Scheffersomyces stipitis CBS
6054]
gi|149387348|gb|ABN67545.2| DNA binding protein [Scheffersomyces stipitis CBS 6054]
Length = 875
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 99/234 (42%), Gaps = 14/234 (5%)
Query: 260 LFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLR-PIPGSLTSSIRNFAKGVESWLTNA 318
+F L V +V++ D + Y+ ++ +L L+ IP + S ++ + G LTN
Sbjct: 519 VFKLYTSDTVLEWVKQCDIIMYKRMIRMLNKLSLQFMIPQEVISQLKQISSGYIRALTNN 578
Query: 319 M--QGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDF 376
+ + + +K+ +F +L R + Q+A +L + + N M D ++D
Sbjct: 579 LLNNKVSKNFVIMKLKVAKSFINLLNRLIKIIETGQSASRILCDVNEKNGMNHDWMKLD- 637
Query: 377 HNVQEQASWVCQCDASLVQQLESDFK-----LTLQQQNSLEEWANWLKNVVNAVLKPFEG 431
+Q+ S C + L + K L +Q+ N + N + G
Sbjct: 638 --IQDIISREIPCGDKNIDVLSTILKSDVVNLLNTKQSERPVIDNAIMNQFANYISELPG 695
Query: 432 KPNFTKA-ARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
K F R F+L S + +R+++L FG++ ++R DEY+ + E
Sbjct: 696 K--FQDVNPRLFILLTSNLLTTCLREISLTGGQGFGAWWIVRCWVDEYLAWCFE 747
>gi|336262769|ref|XP_003346167.1| hypothetical protein SMAC_06634 [Sordaria macrospora k-hell]
gi|380088767|emb|CCC13345.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 769
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 55/272 (20%), Positives = 103/272 (37%), Gaps = 64/272 (23%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFA 308
C+E+ + F + +PVQ + VL+ +P ++ ++RN A
Sbjct: 413 CKEKTFFHLYTSFQGTLTMPVQKLL------------------VLQVVPKTVLDTLRNIA 454
Query: 309 KGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQML 368
+ + ++ QG P ++ K FA +L R +N A AA +L N + M
Sbjct: 455 DKLVPHIRDSFQGQPPHVLKAKEAPATLFAGLLDRVLRVNLTAHAAANMLSNPANRDLMY 514
Query: 369 TD-LNRVDFHNVQEQASWVCQCDAS--LVQQLESDFK----------LTLQQQ------- 408
+ +N ++ V E D L++++ LTL +
Sbjct: 515 VEWINIINLRKVAESVPSRGMDDVVNLLLKEMRDLLDPVNIPWEIEGLTLHGEMAMRNGR 574
Query: 409 -------------NSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSF--YSSMV 453
N L+ W ++L+++ P+ A + W + V
Sbjct: 575 QPQAGDAEESTASNVLDRWVSFLRHL-----------PSHFPYASHTDIVWCVQRLGTAV 623
Query: 454 IRDLTLRSAASFGSFHLIRLLYDEYMFYLIEH 485
+RD+TL SFGS+ + + DE + +L E+
Sbjct: 624 MRDITLGQGKSFGSWWVTKCFIDEMILFLAEY 655
>gi|148706258|gb|EDL38205.1| regulatory factor X, 2 (influences HLA class II expression),
isoform CRA_a [Mus musculus]
Length = 139
Score = 46.2 bits (108), Expect = 0.042, Method: Composition-based stats.
Identities = 18/21 (85%), Positives = 20/21 (95%)
Query: 1 GNSKYHYYGIRVKPDSPLNNI 21
GNSKYHYYGIR+KPDSPLN +
Sbjct: 99 GNSKYHYYGIRLKPDSPLNRL 119
Score = 46.2 bits (108), Expect = 0.042, Method: Composition-based stats.
Identities = 18/21 (85%), Positives = 20/21 (95%)
Query: 29 GNSKYHYYGIRVKPDSPLNNI 49
GNSKYHYYGIR+KPDSPLN +
Sbjct: 99 GNSKYHYYGIRLKPDSPLNRL 119
>gi|159126246|gb|EDP51362.1| DNA damage and replication checkpoint protein Rfx1, putative
[Aspergillus fumigatus A1163]
Length = 855
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 58/284 (20%), Positives = 107/284 (37%), Gaps = 59/284 (20%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E L F + VPVQ +++ D+L YQ ++ + P + +P
Sbjct: 438 CKERNLLRYFSAFHGTLTVPVQKLLIHPNLAPWIKECDWLMYQKMIAFVAPLTTQVVPKL 497
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ + + ++ + + + + P + ++ F +LR +N A AA A L
Sbjct: 498 VLDAFSSISQRLTAHIGETFKAQPAHVTLARLIPAHIFCNLLRHMLDVNQSANAAAAWLC 557
Query: 360 NSTQINQMLTDLNR-VDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWL 418
+ NQM D VD + +A+ + + Q L+ D + L + + A+
Sbjct: 558 HPDNRNQMWFDFKTLVDPKEMISRANIPTCAERAAEQILKHDVRALLTPVDDMNPSAS-- 615
Query: 419 KNVVNAVLKPFEGKPNFTKAAR---------------QFLLKW-SFYSSM---------- 452
PF KP+ T+A R F KW SF ++
Sbjct: 616 --------HPFFTKPD-TEADRAAHKYPVEASAGEEYNFPDKWISFILNLPSAFPHHRTQ 666
Query: 453 ------------VIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
++R LTL A SF ++ + ++ + E M + E
Sbjct: 667 CIIEKVDALWDCILRRLTLGGAQSFSAWWMTKVFFHEMMLWQAE 710
>gi|119498531|ref|XP_001266023.1| DNA damage and replication checkpoint protein Rfx1, putative
[Neosartorya fischeri NRRL 181]
gi|119414187|gb|EAW24126.1| DNA damage and replication checkpoint protein Rfx1, putative
[Neosartorya fischeri NRRL 181]
Length = 816
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 107/284 (37%), Gaps = 59/284 (20%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E L F + VPVQ +++ D+L YQ ++ + P + +P
Sbjct: 399 CKERNLLRYFSAFHGTLTVPVQKLLTHPNLAPWIKECDWLMYQKMIAFVAPLTTQVVPKL 458
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ + + ++ + + + + P + ++ F +LR +N A AA A L
Sbjct: 459 VLDAFSSISQRLTAHIGETFKAQPAHVSLARLIPAHIFCNLLRHMLDVNQSANAAAAWLC 518
Query: 360 NSTQINQMLTDLNR-VDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWL 418
+ NQM D VD + +A+ + + Q L+ D + L + L A+
Sbjct: 519 HPDNRNQMWFDFKTLVDPKEMISRANIPTCAERAAEQILKHDVRALLTPVDDLNPSAS-- 576
Query: 419 KNVVNAVLKPFEGKPNFTKAAR---------------QFLLKW-SFYSSM---------- 452
PF KP+ T+A R F KW SF ++
Sbjct: 577 --------HPFFTKPD-TEADRASHKYPVEASAGEEYNFPDKWISFILNLSSAFPHHRTQ 627
Query: 453 ------------VIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
++R LTL A SF ++ + ++ + E M + E
Sbjct: 628 CIIEKVDALWDCILRRLTLGGAQSFSAWWMTKVFFHEMMLWQAE 671
>gi|255720230|ref|XP_002556395.1| KLTH0H12144p [Lachancea thermotolerans]
gi|238942361|emb|CAR30533.1| KLTH0H12144p [Lachancea thermotolerans CBS 6340]
Length = 740
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 90/199 (45%), Gaps = 18/199 (9%)
Query: 296 IPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAAR 355
+P S++ + +FA ++NA P M+ KV+ FA++++R T + A++A
Sbjct: 541 LPSSVSEKLASFAHSYPEMISNANIDLPVPMVRNKVSIAEKFAKLVKRTTRVIRTAKSAS 600
Query: 356 AVLQNSTQINQMLTDLNR-VDFHNVQEQASWVCQCDAS--------LVQQLESDFKLTLQ 406
+ +T +M D + + ++ + C+ D + ++Q +E F +
Sbjct: 601 KAYRTATSREEMYMDWKKLIKVKDICRTELYCCRNDEASLNEITSFIIQMIEGFFD---R 657
Query: 407 QQNSL-EEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASF 465
++S+ E++ L + LK P + + ++ VIR+L++ +
Sbjct: 658 DEHSISEDFPMELAAQLLTFLKKIRDHP-----VSVVIACTNVVTTGVIRELSIMGSEHA 712
Query: 466 GSFHLIRLLYDEYMFYLIE 484
GS+ I+ DE++++ E
Sbjct: 713 GSWWAIKTFIDEWLYWCDE 731
>gi|342881295|gb|EGU82211.1| hypothetical protein FOXB_07271 [Fusarium oxysporum Fo5176]
Length = 785
Score = 45.4 bits (106), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 96/265 (36%), Gaps = 51/265 (19%)
Query: 259 KLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNA 318
KLF P ++ DF+ YQ ++ ++ L+ +P + R+ + + + +
Sbjct: 416 KLFGNPALAP---WIEECDFILYQRMMSIVSGLKLQVVPKYVLDIFRSISDRLVMHIRES 472
Query: 319 MQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTD-------- 370
QG PQ +I K F ++ R +N A AA L + Q NQM D
Sbjct: 473 FQGQPQHVIRAKEGPAALFVGLIDRALRVNLTAHAAANFLSSREQRNQMYIDWITTIRPR 532
Query: 371 ------------------LNRVDFHNVQEQASWVCQC-----DASLVQQLESDFKLTLQQ 407
LN + W +C D + SD +
Sbjct: 533 KIAECVPTRGMDDVVNLLLNEIRDLVDPADVPWEVECLTIYGDVLSRKGRPSDSDVDGGA 592
Query: 408 QNS--------LEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTL 459
+ S L+ W +L ++ P+ +A +L + V+RDLT+
Sbjct: 593 EASSEKGESYQLDRWVTFLNSLPTRF--PY-------ASASDIMLCVERIGTAVMRDLTM 643
Query: 460 RSAASFGSFHLIRLLYDEYMFYLIE 484
SF S+ + + DE + +++E
Sbjct: 644 NQGKSFSSWWVTKTWIDELVCFMVE 668
>gi|294659616|ref|XP_462015.2| DEHA2G10868p [Debaryomyces hansenii CBS767]
gi|199434102|emb|CAG90496.2| DEHA2G10868p [Debaryomyces hansenii CBS767]
Length = 809
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 95/219 (43%), Gaps = 7/219 (3%)
Query: 269 VQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQG-CPQEMI 327
+ +V D + Y+ + ++L L+ +P + ++ L+ ++Q P+ +
Sbjct: 490 ISEWVNECDNIMYKTMAKMLTKLHLQSVPDDVLRQLKQITNQYVDKLSYSLQNKVPKFFM 549
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHN-VQEQASWV 386
+K+ F +L R + +A +L ++ + M+ D ++D + V +
Sbjct: 550 AMKMKNAKKFISILSRLIKVIETGYSASRILNSAPEKQAMIDDWLKLDVNEIVLREVPCS 609
Query: 387 CQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKA-ARQFLLK 445
+ SL+ L +D L +Q E + +K+ L K F+K R F L
Sbjct: 610 KENVESLLHVLNNDLLTILHEQVDSESVSVLIKSA--HFLAELPSK--FSKLNPRLFTLV 665
Query: 446 WSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
S + + +R+++L FG++ ++R DEY+ + E
Sbjct: 666 SSNFLTTCLREISLNGGQGFGTWWIVRCWVDEYLSWCFE 704
>gi|317138895|ref|XP_001817070.2| DNA damage and replication checkpoint protein Rfx1 [Aspergillus
oryzae RIB40]
Length = 473
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 55/283 (19%), Positives = 99/283 (34%), Gaps = 57/283 (20%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E F + VPVQ +++ D+L YQ ++ + P + +P
Sbjct: 56 CKERNLRHYFSAFHGTLTVPVQKLLTHPNLAPWIKECDWLMYQKMIAFVAPLTTQVVPKL 115
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ + + ++ + + + + + P + ++ F +LR +N A AA A L
Sbjct: 116 VLDTFSSISQRLTTHIADTFKAQPMHVSLARLIPAHIFCNLLRHMLDVNQSANAAAAWLC 175
Query: 360 NSTQINQMLTDLNR-VDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWL 418
+ NQM D VD + +A+ + + Q L+ D + L L
Sbjct: 176 HPDNRNQMWFDFKTLVDPKEMISKANIPSCAEQATEQILKHDVRALLTPITDLNP----- 230
Query: 419 KNVVNAVLKPFEGKP---------------------NFTKAARQFLLKWSF--------- 448
A PF KP NF F+L F
Sbjct: 231 -----AAAHPFYTKPDSEGSIQSHKYPVQSSTGDDYNFPDKWISFILNLPFAFPNHRTKC 285
Query: 449 -------YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
++R LTL A SF ++ + ++ + E M + E
Sbjct: 286 IIEKIDALWDCILRRLTLGGAQSFSAWWMTKVFFHEMMLWQAE 328
>gi|70998596|ref|XP_754020.1| DNA damage and replication checkpoint protein Rfx1 [Aspergillus
fumigatus Af293]
gi|66851656|gb|EAL91982.1| DNA damage and replication checkpoint protein Rfx1, putative
[Aspergillus fumigatus Af293]
Length = 855
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 57/284 (20%), Positives = 107/284 (37%), Gaps = 59/284 (20%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E L F + VPVQ +++ D+L YQ ++ + P + +P
Sbjct: 438 CKERNLLRYFSAFHGTLTVPVQKLLIHPNLAPWIKECDWLMYQKMIAFVAPLTTQVVPKL 497
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ + + ++ + + + + P + ++ F +LR +N A AA A L
Sbjct: 498 VLDAFSSISQRLTAHIGETFKAQPAHVTLARLIPAHIFCNLLRHMLDVNQSANAAAAWLC 557
Query: 360 NSTQINQMLTDLNR-VDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWL 418
+ NQM D VD + +A+ + + Q L+ D + L + + A+
Sbjct: 558 HPDNRNQMWFDFKTLVDPKEMISRANIPTCAERAAEQILKHDVRALLTPVDDMNPSAS-- 615
Query: 419 KNVVNAVLKPFEGKPNFTKAAR---------------QFLLKW-SFYSSM---------- 452
PF +P+ T+A R F KW SF ++
Sbjct: 616 --------HPFFTRPD-TEADRAAHKYPVEASAGEEYNFPDKWISFILNLPSAFPHHRTQ 666
Query: 453 ------------VIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
++R LTL A SF ++ + ++ + E M + E
Sbjct: 667 CIIEKVDALWDCILRRLTLGGAQSFSAWWMTKVFFHEMMLWQAE 710
>gi|240274002|gb|EER37520.1| DNA damage and replication checkpoint protein Rfx1 [Ajellomyces
capsulatus H143]
Length = 558
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/103 (20%), Positives = 51/103 (49%)
Query: 269 VQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMIN 328
V +++ D+L YQ ++ + P + +P + ++ + ++G+ S + ++ P +
Sbjct: 228 VAPWIKECDWLMYQKMIAFVAPLTTQVVPDPVLNAFGSISRGLVSHIKETLKSHPDHVCR 287
Query: 329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDL 371
+++ F ++L+R +N A AA A L ++ +M D
Sbjct: 288 ARLSPARIFCRLLKRMLDVNQSAIAASAWLCHAENRTKMWEDF 330
>gi|195996205|ref|XP_002107971.1| hypothetical protein TRIADDRAFT_51992 [Trichoplax adhaerens]
gi|190588747|gb|EDV28769.1| hypothetical protein TRIADDRAFT_51992 [Trichoplax adhaerens]
Length = 338
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 52/136 (38%), Gaps = 28/136 (20%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI +K S G+K + + S ++ EG Q
Sbjct: 85 GRSKYHYYGICIKETSEFYK--------EIYGRKMLIREELSRKSEKRFEGEHGISQVQ- 135
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIV 148
NA+ D P ID + C+P D + + TF +Y HC+ L
Sbjct: 136 ----------------NAL-DLPNID--DCCIPSDLPQDKIITFTLMYSTHCQRILSTSS 176
Query: 149 TLDFSTIESLWREFWR 164
T +F+ FW+
Sbjct: 177 THNFTETCDFLIHFWQ 192
>gi|225557882|gb|EEH06167.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 887
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/103 (20%), Positives = 51/103 (49%)
Query: 269 VQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMIN 328
V +++ D+L YQ ++ + P + +P + ++ + ++G+ S + ++ P +
Sbjct: 504 VAPWIKECDWLMYQKMIAFVAPLTTQVVPDPVLNAFGSISRGLVSHIKETLKSHPDHVCR 563
Query: 329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDL 371
+++ F ++L+R +N A AA A L ++ +M D
Sbjct: 564 ARLSPARIFCRLLKRMLDVNQSAIAASAWLCHAENRTKMWEDF 606
>gi|297266644|ref|XP_001106532.2| PREDICTED: uncharacterized protein FLJ42986-like [Macaca mulatta]
Length = 351
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 415 ANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLL 474
A+ L + ++P K F K A F L+W+ + V + +TL SFGS+HL LL
Sbjct: 137 ASMLGDRKCHTVEPSRSKEEFIKLAAGFQLRWNLLLTAVSKAMTLCHRDSFGSWHLFHLL 196
Query: 475 YDEYMFYLIE 484
EY+ + ++
Sbjct: 197 LLEYVIHTLQ 206
>gi|325095613|gb|EGC48923.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 881
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/103 (20%), Positives = 51/103 (49%)
Query: 269 VQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMIN 328
V +++ D+L YQ ++ + P + +P + ++ + ++G+ S + ++ P +
Sbjct: 498 VAPWIKECDWLMYQKMIAFVAPLTTQVVPDPVLNAFGSISRGLVSHIKETLKSHPDHVCR 557
Query: 329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDL 371
+++ F ++L+R +N A AA A L ++ +M D
Sbjct: 558 ARLSPARIFCRLLKRMLDVNQSAIAASAWLCHAENRTKMWEDF 600
>gi|121712672|ref|XP_001273947.1| DNA damage and replication checkpoint protein Rfx1, putative
[Aspergillus clavatus NRRL 1]
gi|119402100|gb|EAW12521.1| DNA damage and replication checkpoint protein Rfx1, putative
[Aspergillus clavatus NRRL 1]
Length = 885
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 62/313 (19%), Positives = 114/313 (36%), Gaps = 69/313 (22%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQAF---------VRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E L F + VPVQ ++ D+L YQ ++ + P + +P
Sbjct: 470 CKERNLLRYFSAFHGTLTVPVQKLLTHPNLAPWIKECDWLMYQKMIAFVAPLTTQVVPKL 529
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ + + ++ + S + + P + ++ F +L+ +N A AA A L
Sbjct: 530 VLDAFSSISQRLTSHIAETFKAQPAHVTLARLIPAHIFCNLLKHMLDVNQSANAAAAWLC 589
Query: 360 NSTQINQMLTDLNR-VDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWL 418
+ NQM D VD + +A+ + + Q L+ D + L +
Sbjct: 590 HPDNRNQMWFDFKTLVDPKEMISRANIPSCAERAAEQILKHDMRALLTPIDD-------- 641
Query: 419 KNVVNAVLKPFEGKPNFTK-------AARQFLL------------KW-SFYSSM------ 452
+ P P FTK AA +F + KW +F ++
Sbjct: 642 -------MNPSVSHPFFTKADTEADHAAHKFPVESSTGDEYSFPDKWIAFILNLASAFPH 694
Query: 453 ----------------VIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPI 496
V+R LTL A SF ++ + ++ + E M + E + + + +
Sbjct: 695 HRTQCIIEKVDALWDCVLRRLTLGGAQSFSAWWMTKVFFHEMMLWQAEKNGFMRSTPSTL 754
Query: 497 --AVIGSKESNPV 507
A GS +S P
Sbjct: 755 QNAASGSNQSGPT 767
>gi|154271500|ref|XP_001536603.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150409273|gb|EDN04723.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 841
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/221 (19%), Positives = 99/221 (44%), Gaps = 20/221 (9%)
Query: 269 VQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMIN 328
V +++ D+L YQ ++ + P + +P + ++ + ++G+ S + ++ P +
Sbjct: 490 VAPWIKECDWLMYQKMIAFVAPLTTQVVPDPVLNAFGSISRGLVSHVKETLKSHPDHVCR 549
Query: 329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTD-LNRVDFHNVQEQASWVC 387
+++ F ++L+R +N A AA A L ++ +M D ++ ++ ++ A V
Sbjct: 550 ARLSPARIFCRLLKRMLDVNQSAIAASAWLCHAENRTKMWEDFVSYIEPMDIVAMAK-VP 608
Query: 388 QCDASLVQQLESDFKLTLQQQNS--LEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLK 445
C V + K + Q + W ++ N+ PF F Q ++
Sbjct: 609 NCSVGGVLDI---MKHQIPQDTPPFPDRWIAFILNL------PFL----FPNHKAQCIID 655
Query: 446 W--SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
+ ++ ++ R LTL A SF ++ + ++ + E M + E
Sbjct: 656 SADAIWTRLLHR-LTLGGAQSFSAWWMTKVFFSEMMLWQAE 695
>gi|256089713|ref|XP_002580915.1| hypothetical protein [Schistosoma mansoni]
Length = 67
Score = 43.5 bits (101), Expect = 0.32, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 109 DFPEIDLSEDCLP--EDCTI----EDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREF 162
D PE L+++ L E I EDV TF +Y LDA+V LDF++IE++W+ F
Sbjct: 1 DLPENSLNKNRLKTIETSNISPINEDVITFCRLYALSAGYMLDAVVNLDFTSIETVWKAF 60
Query: 163 WRSQD 167
W +++
Sbjct: 61 WCTEE 65
>gi|238503506|ref|XP_002382986.1| DNA damage and replication checkpoint protein Rfx1, putative
[Aspergillus flavus NRRL3357]
gi|220690457|gb|EED46806.1| DNA damage and replication checkpoint protein Rfx1, putative
[Aspergillus flavus NRRL3357]
Length = 854
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 55/283 (19%), Positives = 99/283 (34%), Gaps = 57/283 (20%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E F + VPVQ +++ D+L YQ ++ + P + +P
Sbjct: 437 CKERNLRHYFSAFHGTLTVPVQKLLTHPNLAPWIKECDWLMYQKMIAFVAPLTTQVVPKL 496
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ + + ++ + + + + + P + ++ F +LR +N A AA A L
Sbjct: 497 VLDTFSSISQRLTTHIADTFKAQPMHVSLARLIPAHIFCNLLRHMLDVNQSANAAAAWLC 556
Query: 360 NSTQINQMLTDLNR-VDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWL 418
+ NQM D VD + +A+ + + Q L+ D + L L
Sbjct: 557 HPDNRNQMWFDFKTLVDPKEMISKANIPSCAEQATEQILKHDVRALLTPITDLNP----- 611
Query: 419 KNVVNAVLKPFEGKP---------------------NFTKAARQFLLKWSFYS------- 450
A PF KP NF F+L F
Sbjct: 612 -----AAAHPFYTKPDSEGSIQSHKYPVQSSTGDDYNFPDKWISFILNLPFAFPNHRTKC 666
Query: 451 ---------SMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
++R LTL A SF ++ + ++ + E M + E
Sbjct: 667 IIEKVDALWDCILRRLTLGGAQSFSAWWMTKVFFHEMMLWQAE 709
>gi|239610064|gb|EEQ87051.1| RfxA [Ajellomyces dermatitidis ER-3]
Length = 875
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/103 (19%), Positives = 52/103 (50%)
Query: 269 VQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMIN 328
V +++ D+L YQ ++ + P + +P + ++ + ++G+ + + + ++ P +
Sbjct: 492 VAPWIKECDWLMYQKMIAFVAPLTTQVVPDPVLNAFGSISRGLVAHIKDTLKSHPNHVSQ 551
Query: 329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDL 371
+++ F ++L+R +N A AA A L ++ +M D
Sbjct: 552 ARLSPARIFCRLLKRMLDVNQSAIAASAWLCHAENRTKMWEDF 594
>gi|83764924|dbj|BAE55068.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 856
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 55/283 (19%), Positives = 99/283 (34%), Gaps = 57/283 (20%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E F + VPVQ +++ D+L YQ ++ + P + +P
Sbjct: 439 CKERNLRHYFSAFHGTLTVPVQKLLTHPNLAPWIKECDWLMYQKMIAFVAPLTTQVVPKL 498
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ + + ++ + + + + + P + ++ F +LR +N A AA A L
Sbjct: 499 VLDTFSSISQRLTTHIADTFKAQPMHVSLARLIPAHIFCNLLRHMLDVNQSANAAAAWLC 558
Query: 360 NSTQINQMLTDLNR-VDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWL 418
+ NQM D VD + +A+ + + Q L+ D + L L
Sbjct: 559 HPDNRNQMWFDFKTLVDPKEMISKANIPSCAEQATEQILKHDVRALLTPITDLNP----- 613
Query: 419 KNVVNAVLKPFEGKP---------------------NFTKAARQFLLKWSFYS------- 450
A PF KP NF F+L F
Sbjct: 614 -----AAAHPFYTKPDSEGSIQSHKYPVQSSTGDDYNFPDKWISFILNLPFAFPNHRTKC 668
Query: 451 ---------SMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
++R LTL A SF ++ + ++ + E M + E
Sbjct: 669 IIEKIDALWDCILRRLTLGGAQSFSAWWMTKVFFHEMMLWQAE 711
>gi|391863325|gb|EIT72636.1| RFX family transcription factor [Aspergillus oryzae 3.042]
Length = 888
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 55/283 (19%), Positives = 99/283 (34%), Gaps = 57/283 (20%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E F + VPVQ +++ D+L YQ ++ + P + +P
Sbjct: 471 CKERNLRHYFSAFHGTLTVPVQKLLTHPNLAPWIKECDWLMYQKMIAFVAPLTTQVVPKL 530
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ + + ++ + + + + + P + ++ F +LR +N A AA A L
Sbjct: 531 VLDTFSSISQRLTTHIADTFKAQPMHVSLARLIPAHIFCNLLRHMLDVNQSANAAAAWLC 590
Query: 360 NSTQINQMLTDLNR-VDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWL 418
+ NQM D VD + +A+ + + Q L+ D + L L
Sbjct: 591 HPDNRNQMWFDFKTLVDPKEMISKANIPSCAEQATEQILKHDVRALLTPITDLNP----- 645
Query: 419 KNVVNAVLKPFEGKP---------------------NFTKAARQFLLKWSFYS------- 450
A PF KP NF F+L F
Sbjct: 646 -----AAAHPFYTKPDSEGSIQSHKYPVQSSTGDDYNFPDKWISFILNLPFAFPNHRTKC 700
Query: 451 ---------SMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
++R LTL A SF ++ + ++ + E M + E
Sbjct: 701 IIEKVDALWDCILRRLTLGGAQSFSAWWMTKVFFHEMMLWQAE 743
>gi|327350986|gb|EGE79843.1| RfxA protein [Ajellomyces dermatitidis ATCC 18188]
Length = 880
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/103 (19%), Positives = 52/103 (50%)
Query: 269 VQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMIN 328
V +++ D+L YQ ++ + P + +P + ++ + ++G+ + + + ++ P +
Sbjct: 497 VAPWIKECDWLMYQKMIAFVAPLTTQVVPDPVLNAFGSISRGLVAHIKDTLKSHPNHVSQ 556
Query: 329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDL 371
+++ F ++L+R +N A AA A L ++ +M D
Sbjct: 557 ARLSPARIFCRLLKRMLDVNQSAIAASAWLCHAENRTKMWEDF 599
>gi|261198523|ref|XP_002625663.1| RfxA [Ajellomyces dermatitidis SLH14081]
gi|239594815|gb|EEQ77396.1| RfxA [Ajellomyces dermatitidis SLH14081]
Length = 862
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/103 (19%), Positives = 52/103 (50%)
Query: 269 VQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMIN 328
V +++ D+L YQ ++ + P + +P + ++ + ++G+ + + + ++ P +
Sbjct: 479 VAPWIKECDWLMYQKMIAFVAPLTTQVVPDPVLNAFGSISRGLVAHIKDTLKSHPNHVSQ 538
Query: 329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDL 371
+++ F ++L+R +N A AA A L ++ +M D
Sbjct: 539 ARLSPARIFCRLLKRMLDVNQSAIAASAWLCHAENRTKMWEDF 581
>gi|449280779|gb|EMC88005.1| hypothetical protein A306_03204, partial [Columba livia]
Length = 149
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 9/145 (6%)
Query: 331 VTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD 390
+T V F + L R L+++ + R VL +++++ + +DL+ V + + Q
Sbjct: 4 LTEVKVFIKRLGRKIDLSNMVKIMRTVLNSNSKVTVLRSDLHAVISQGFLDVPGNLFQTK 63
Query: 391 ASLVQQLESDFKLT--------LQQQNSLEEWANWLKNVVNA-VLKPFEGKPNFTKAARQ 441
++ ++D L L ++ N + + + A V++P K F K A
Sbjct: 64 CRNPEEPQNDIHLKCLNDLMSLLVPSIDIQVLLNCVSSNLQAFVIQPSRSKEEFRKLASD 123
Query: 442 FLLKWSFYSSMVIRDLTLRSAASFG 466
F LKW+F S V + +TL A SFG
Sbjct: 124 FQLKWNFLLSAVSKVMTLNYADSFG 148
>gi|7406679|emb|CAB85619.1| putative RFX transcription factor [Penicillium chrysogenum]
Length = 855
Score = 42.4 bits (98), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 105/273 (38%), Gaps = 37/273 (13%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E + F + VPVQ +++ D++ YQ ++ + P + +P
Sbjct: 455 CKERNLMKYFSAFHGTLTVPVQKLLTHPNLAPWIKECDWMMYQKMIAFVAPLTTQVVPKP 514
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ + + ++ + + + P + ++ F +L+ +N A AA A L
Sbjct: 515 VLDAFNSISQRLCGHIAETFKTQPTHVSIARLIPAHIFCNLLKHMLDVNQAANAAAAWLC 574
Query: 360 NSTQINQMLTDLNR-VDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWL 418
+ NQM TD V+ ++ +A+ + + Q L+ D + L + + A+ L
Sbjct: 575 HPDNRNQMWTDFKTMVNPRDMMTKANIPTCAELATEQILKHDIRALLTPLSDADPSASLL 634
Query: 419 -------KNVVNAVLKPFEGKP----NFTKAARQFLL----------------KWSFYSS 451
+ V A P E P NF QF+L K
Sbjct: 635 FFTQPDTPDSVEAHKFPVESAPGDEYNFPDKWVQFILNIPAAFANHRTQCVIEKVDALWD 694
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
V+ LTL A SF ++ + ++ + E M + E
Sbjct: 695 SVLHRLTLAGAPSFSAWWMTKVFFHEMMVWQAE 727
>gi|296809129|ref|XP_002844903.1| RfxA [Arthroderma otae CBS 113480]
gi|238844386|gb|EEQ34048.1| RfxA [Arthroderma otae CBS 113480]
Length = 865
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 58/280 (20%), Positives = 109/280 (38%), Gaps = 39/280 (13%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQAF---------VRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E+ F + VPV V D+L YQ ++ + P + +P
Sbjct: 473 CKEKNLFRHFSAFQGTLTVPVHKLLVHPNVAPWVEECDWLMYQKMLAFVSPLTTQVVPDP 532
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ + R+ + + S + ++ P+ + ++ F +L+R +N A AA A L
Sbjct: 533 VLKAFRSISCKLVSHIAETLKSQPEHVSTARLIPCRLFCHLLKRMLDVNQSAIAAAAWLC 592
Query: 360 NSTQINQMLTDL-NRVDFHNVQEQASWVCQCDASLVQQLESDFKLTL---------QQQN 409
+ N+M + N +D +A+ + C L + D TL Q +
Sbjct: 593 HLQNRNKMWEEFSNFIDPAETVVKAN-IPPCSLKLAITVLKDHMKTLLYPLDNCAPPQTD 651
Query: 410 SL-----------------EEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSM 452
SL +E+ N+ + +L+ PN + A + K S
Sbjct: 652 SLDNELAGFQKFPLPPASADEYTNFPDRWIAFILQLPAMFPNHSAAC--MIEKADSLWST 709
Query: 453 VIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
V+ LTL +A SF ++ + ++ + E M + E +AT
Sbjct: 710 VLHRLTLSNAESFNAWWMTKVFFLEMMQWQAERGGFMATS 749
>gi|255943921|ref|XP_002562728.1| transcription factor like protein RFX-Penicillium chrysogenum
[Penicillium chrysogenum Wisconsin 54-1255]
gi|211587463|emb|CAP85498.1| transcription factor like protein RFX-Penicillium chrysogenum
[Penicillium chrysogenum Wisconsin 54-1255]
Length = 859
Score = 42.0 bits (97), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 105/273 (38%), Gaps = 37/273 (13%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E + F + VPVQ +++ D++ YQ ++ + P + +P
Sbjct: 459 CKERNLMKYFSAFHGTLTVPVQKLLTHPNLAPWIKECDWMMYQKMIAFVAPLTTQVVPKP 518
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ + + ++ + + + P + ++ F +L+ +N A AA A L
Sbjct: 519 VLDAFNSISQRLCGHIAETFKTQPTHVSIARLIPAHIFCNLLKHMLDVNQAANAAAAWLC 578
Query: 360 NSTQINQMLTDL-NRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWL 418
+ NQM TD V+ ++ +A+ + + Q L+ D + L + + A+ L
Sbjct: 579 HPDNRNQMWTDFKTMVNPRDMMTKANIPTCAELATEQILKHDIRALLTPLSDADPSASLL 638
Query: 419 -------KNVVNAVLKPFEGKP----NFTKAARQFLL----------------KWSFYSS 451
+ V A P E P NF QF+L K
Sbjct: 639 FFTQPDTPDSVEAHKFPVESAPGDEYNFPDKWVQFILNIPAAFANHRTQCVIEKVDALWD 698
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
V+ LTL A SF ++ + ++ + E M + E
Sbjct: 699 SVLHRLTLAGAPSFSAWWMTKVFFHEMMVWQAE 731
>gi|258572198|ref|XP_002544861.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237905131|gb|EEP79532.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 838
Score = 42.0 bits (97), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 12/128 (9%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E+ + F + VPV ++ D+L YQ +V + P + IP
Sbjct: 465 CKEKNFFRHISAFQGTLTVPVHKLLVHPAIVPWIEECDWLMYQKMVAFIAPLTTQVIPEP 524
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVL- 358
+ + + ++ + + + + P+ + + ++ F +LRR +N A +A A L
Sbjct: 525 VVKAFTSISRRLVPHIEDTFKSQPEHVSSARIVPARLFCHLLRRMLDVNQCANSAAAWLC 584
Query: 359 --QNSTQI 364
+N T++
Sbjct: 585 HIENRTKM 592
>gi|425766384|gb|EKV04997.1| DNA damage and replication checkpoint protein Rfx1, putative
[Penicillium digitatum PHI26]
Length = 865
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 103/273 (37%), Gaps = 37/273 (13%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E + F + VPVQ +++ D++ YQ ++ + P + +P
Sbjct: 465 CKERNLMKYFSAFHGTLTVPVQKLLTHPNLAPWIKECDWMMYQKMIAFVAPLTTQVVPKP 524
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ + + ++ + +T + P + ++ F +L+ +N A AA A L
Sbjct: 525 VLDAFNSISQRLCGHITETFKTQPTHVSLARLIPAHIFCNLLKHMLDVNQAANAAAAWLC 584
Query: 360 NSTQINQMLTDLNR-VDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANW- 417
+ NQM TD V+ + +A+ + + Q L+ D + L + A+
Sbjct: 585 HPDNRNQMWTDFKTMVNPREMMTKANIPTCAEPATEQILKHDIRALLTPLTDTDPSASLH 644
Query: 418 ------LKNVVNAVLKPFEGKP----NFTKAARQFLL----------------KWSFYSS 451
+ V A P E P NF QF+L K
Sbjct: 645 FFTQPDTPDSVEAHKFPVESAPGDEYNFPDKWVQFILNIPAAFANHRTQCVIEKVDALWD 704
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
V+ LTL A SF ++ + ++ + E M + E
Sbjct: 705 SVLHRLTLAGAPSFSAWWMTKVFFHEMMIWQAE 737
>gi|425775384|gb|EKV13657.1| DNA damage and replication checkpoint protein Rfx1, putative
[Penicillium digitatum Pd1]
Length = 865
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 103/273 (37%), Gaps = 37/273 (13%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E + F + VPVQ +++ D++ YQ ++ + P + +P
Sbjct: 465 CKERNLMKYFSAFHGTLTVPVQKLLTHPNLAPWIKECDWMMYQKMIAFVAPLTTQVVPKP 524
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ + + ++ + +T + P + ++ F +L+ +N A AA A L
Sbjct: 525 VLDAFNSISQRLCGHITETFKTQPTHVSLARLIPAHIFCNLLKHMLDVNQAANAAAAWLC 584
Query: 360 NSTQINQMLTDLNR-VDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANW- 417
+ NQM TD V+ + +A+ + + Q L+ D + L + A+
Sbjct: 585 HPDNRNQMWTDFKTMVNPREMMTKANIPTCAEPATEQILKHDIRALLTPLTDTDPSASLH 644
Query: 418 ------LKNVVNAVLKPFEGKP----NFTKAARQFLL----------------KWSFYSS 451
+ V A P E P NF QF+L K
Sbjct: 645 FFTQPDTPDSVEAHKFPVESAPGDEYNFPDKWVQFILNIPAAFANHRTQCVIEKVDALWD 704
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
V+ LTL A SF ++ + ++ + E M + E
Sbjct: 705 SVLHRLTLAGAPSFSAWWMTKVFFHEMMIWQAE 737
>gi|67523681|ref|XP_659900.1| hypothetical protein AN2296.2 [Aspergillus nidulans FGSC A4]
gi|40745251|gb|EAA64407.1| hypothetical protein AN2296.2 [Aspergillus nidulans FGSC A4]
Length = 843
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 54/283 (19%), Positives = 103/283 (36%), Gaps = 57/283 (20%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQAF---------VRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E L F + VPVQ ++ D+L YQ ++ + P + +P
Sbjct: 449 CKERNLLRFFSAFHGTLTVPVQKLLTHPNLAPWIKECDWLMYQKMIAFVAPLTTQVVPKL 508
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ + + ++ + + + + P + ++ F +L+ +N A AA A L
Sbjct: 509 VLDAFSSISQRLTTHIAETFKAQPVHVSLARLLPAHIFCNLLKHMLDVNQSANAAAAWLC 568
Query: 360 NSTQINQMLTDLNR-VDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWL 418
+ NQM D VD + +A+ + + Q L+ D + L L A+
Sbjct: 569 HPDNRNQMWLDFTTLVDPKEMITRANIPVCAEQATEQILKDDIRALLTPVADLNPAAS-- 626
Query: 419 KNVVNAVLKPFEGKPNFTKAAR--------------QFLLKW-SFYSSM----------- 452
PF +P+ K+ + F KW SF ++
Sbjct: 627 --------HPFFSQPDLEKSPKPHKFSVEESVGDEYNFPDKWISFILNLAHIFPQHRTQC 678
Query: 453 -----------VIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
++ LTL A SF ++ + ++ + E M + E
Sbjct: 679 IIERVDALWDCILHRLTLGGAQSFSAWWMTKVFFHEMMLWQAE 721
>gi|402580616|gb|EJW74565.1| hypothetical protein WUBG_14526, partial [Wuchereria bancrofti]
Length = 165
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 467 SFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPV 507
SFHLIRLL+DEY+ YL+E ++A A+ + I V+ N V
Sbjct: 17 SFHLIRLLFDEYLLYLVELRLAKASNKPVIYVMTQVMENIV 57
>gi|259487690|tpe|CBF86555.1| TPA: DNA damage and replication checkpoint protein Rfx1, putative
(AFU_orthologue; AFUA_5G06120) [Aspergillus nidulans
FGSC A4]
Length = 862
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 54/283 (19%), Positives = 103/283 (36%), Gaps = 57/283 (20%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQAF---------VRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E L F + VPVQ ++ D+L YQ ++ + P + +P
Sbjct: 468 CKERNLLRFFSAFHGTLTVPVQKLLTHPNLAPWIKECDWLMYQKMIAFVAPLTTQVVPKL 527
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ + + ++ + + + + P + ++ F +L+ +N A AA A L
Sbjct: 528 VLDAFSSISQRLTTHIAETFKAQPVHVSLARLLPAHIFCNLLKHMLDVNQSANAAAAWLC 587
Query: 360 NSTQINQMLTDLNR-VDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWL 418
+ NQM D VD + +A+ + + Q L+ D + L L A+
Sbjct: 588 HPDNRNQMWLDFTTLVDPKEMITRANIPVCAEQATEQILKDDIRALLTPVADLNPAAS-- 645
Query: 419 KNVVNAVLKPFEGKPNFTKAAR--------------QFLLKW-SFYSSM----------- 452
PF +P+ K+ + F KW SF ++
Sbjct: 646 --------HPFFSQPDLEKSPKPHKFSVEESVGDEYNFPDKWISFILNLAHIFPQHRTQC 697
Query: 453 -----------VIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
++ LTL A SF ++ + ++ + E M + E
Sbjct: 698 IIERVDALWDCILHRLTLGGAQSFSAWWMTKVFFHEMMLWQAE 740
>gi|354546127|emb|CCE42856.1| hypothetical protein CPAR2_204990 [Candida parapsilosis]
Length = 920
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 99/236 (41%), Gaps = 20/236 (8%)
Query: 258 SKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPI-PGSLTSSIRNFAKGVESWLT 316
SKL+ + +V++ D L Y+ +V +L ++ + P + ++ A L
Sbjct: 633 SKLYTADSVI---EWVQQCDLLMYKKMVRMLSKLHMQYLMPQENINQLKTIASNYTRTLA 689
Query: 317 NAMQGC--PQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRV 374
N++ + I +K+ F +L R + A +L + T+ ML D ++
Sbjct: 690 NSIINSRNSKTFITMKLKMAKHFVNLLNRLIKVIETGSTASRILNDDTEKQVMLQDWQKL 749
Query: 375 DFHNVQEQASWVCQC-DASLVQQL-----ESDFKLTLQQQNSLEEWANWLKNVVNAVLKP 428
+F E S C D S + L E K+ + N V +
Sbjct: 750 NF---TEMVSRDVPCADESNLNTLIFILSEEVVKIVETPSDENSSLMQTYANFVGGLPSQ 806
Query: 429 FEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
F T + R FLL S + ++R+++L+S FG++ ++R DEY+ +++E
Sbjct: 807 FP-----TVSPRMFLLLSSNLLTSILREISLKSGDGFGAWWIVRCWVDEYLAWIME 857
>gi|241958840|ref|XP_002422139.1| RFX-like DNA-binding protein, putative [Candida dubliniensis CD36]
gi|223645484|emb|CAX40141.1| RFX-like DNA-binding protein, putative [Candida dubliniensis CD36]
Length = 853
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 31/232 (13%)
Query: 269 VQAFVRRVDFLFYQNLVEVLIPDVLRP-IPGSLTSSIRNFAKGVESWLTNAM--QGCPQE 325
+ +V + D + Y+ ++ +L L+ IP ++ A G L+ ++
Sbjct: 547 IAEWVMKCDLIMYKKMIRMLSKLQLQLLIPQEQLFQLKQIADGYIKTLSTSLINSKVSPN 606
Query: 326 MINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASW 385
+ +K+ F +L R + Q A +L + + N M D ++D H +
Sbjct: 607 FVMMKLKLAKHFVNLLNRLIKVIETGQPASRILNDDNEKNAMTQDWMKLDVHGI------ 660
Query: 386 VCQ---CDASLVQQLES----------DFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
+C+ C S + L KL +Q ++ ++AN++ N+ +
Sbjct: 661 ICREMPCSDSNIDTLTYILTGEVVNLIKVKLDNEQSPTMNDFANYISNLPSRF------- 713
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
P R FLL S + +R+++L FG++ ++R DEY+ + E
Sbjct: 714 PEVN--TRLFLLLASNLLTTCLREISLSGGEGFGAWWIVRCWIDEYLAWSFE 763
>gi|156380816|ref|XP_001631963.1| predicted protein [Nematostella vectensis]
gi|156219012|gb|EDO39900.1| predicted protein [Nematostella vectensis]
Length = 440
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 367 MLTDLNRVDFHNVQEQASWV----CQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVV 422
ML D ++DF + QA W + D + ++++ ++F L QQ +++++A W ++V
Sbjct: 1 MLQDWKQIDFEGIARQAMWTFSQNVEKDYAKIKEIHTEFTQLLDQQATIDQYAEWASSLV 60
Query: 423 N 423
+
Sbjct: 61 D 61
>gi|115438328|ref|XP_001218038.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188853|gb|EAU30553.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 881
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 10/167 (5%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C+E+ L F + VPVQ +++ D+L YQ ++ + P + +P
Sbjct: 471 CKEKNLLRYFSAFHGTLTVPVQKLLTHPNLAPWIKECDWLMYQKMIAFVAPLTTQVVPKL 530
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ + + ++ + + + + P + ++ F +L+ +N A AA A L
Sbjct: 531 VLDAFSSISQRLTAHIAETFKAQPVHVSLARLIPAHIFCNLLKHMLDVNQSANAAAAWLC 590
Query: 360 NSTQINQMLTDLNR-VDFHNVQEQASWVCQCDASLVQQLESDFKLTL 405
+ NQM D VD + +A+ + + Q L+ D + L
Sbjct: 591 HPDNRNQMWFDFKTLVDPQEMMTRANIPNCAEKATEQILKHDIRALL 637
>gi|389644440|ref|XP_003719852.1| hypothetical protein MGG_04000 [Magnaporthe oryzae 70-15]
gi|351639621|gb|EHA47485.1| hypothetical protein MGG_04000 [Magnaporthe oryzae 70-15]
gi|440470042|gb|ELQ39131.1| hypothetical protein OOU_Y34scaffold00514g48 [Magnaporthe oryzae
Y34]
gi|440490039|gb|ELQ69634.1| hypothetical protein OOW_P131scaffold00134g6 [Magnaporthe oryzae
P131]
Length = 797
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 106/275 (38%), Gaps = 51/275 (18%)
Query: 249 CEEEKYLSKSKLFCLSKCVPVQ---------AFVRRVDFLFYQNLVEVLIPDVLRPIPGS 299
C E+ + F + +PVQ ++ DF+ YQ ++ +L L+ +P
Sbjct: 410 CREKAFFHLYTSFLGTLTMPVQRLFAHPDIAQWIEECDFVLYQRMMRILHGLSLQVVPKP 469
Query: 300 LTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359
+ ++RN + + + +A QG P ++ K FA +L R +N A AA +L
Sbjct: 470 VLDAMRNISDRLVPRIRDAFQGQPPHVMRAKEAPAVIFAALLDRELRVNLAAHAAANMLA 529
Query: 360 NSTQINQMLTDL-----NRVDFHNVQEQA-SWVCQCDASLVQQLESDFKLTLQQQNSLEE 413
++ N+M D R NV +A V ++ L + ++ + S
Sbjct: 530 HAPNRNEMYQDFITLLSYRKIAENVPRRAMDEVADILLKEIRDLIAPAEIDWYEVESKTT 589
Query: 414 WANWLKNVVNAVLKPFEGKPNFTKAA---------------RQFLLKWSFYS-------- 450
WL VN G P KA R ++ + S
Sbjct: 590 HGAWL--AVN-------GGPPIPKAPEADTTRVLDLWLAFLRSLPSRFPYASASDIVCYL 640
Query: 451 ----SMVIRDLTLRSAASFGSFHLIRLLYDEYMFY 481
S ++RDLT+ + SFG++ + + DE M +
Sbjct: 641 DRVGSAIMRDLTICAGKSFGTWWVTKCWIDEMMSF 675
>gi|397475628|ref|XP_003846033.1| PREDICTED: LOW QUALITY PROTEIN: kinesin-like protein KIF27 [Pan
paniscus]
Length = 816
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 13/96 (13%)
Query: 347 LNHLAQAARAVLQNSTQINQMLT-DLNRVDFHNVQEQASWV---C---QCDA----SLVQ 395
L Q+ +A + +TQIN+ + D NR+ H+++EQ + + C QC + +
Sbjct: 366 LREALQSQQAGVSQTTQINREGSPDTNRI--HSLEEQVAQLQGECLGYQCCVEEAFTFLV 423
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEG 431
L+ +L +QQ+ L+EW N ++ V AVL F G
Sbjct: 424 DLKDTVRLNEKQQHKLQEWFNMIQEVRKAVLTSFRG 459
>gi|68485085|ref|XP_713532.1| hypothetical protein CaO19.11346 [Candida albicans SC5314]
gi|68485166|ref|XP_713492.1| hypothetical protein CaO19.3865 [Candida albicans SC5314]
gi|46434989|gb|EAK94381.1| hypothetical protein CaO19.3865 [Candida albicans SC5314]
gi|46435035|gb|EAK94426.1| hypothetical protein CaO19.11346 [Candida albicans SC5314]
Length = 851
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 44/227 (19%), Positives = 98/227 (43%), Gaps = 27/227 (11%)
Query: 272 FVRRVDFLFYQNLVEVLIPDVLRP-IPGSLTSSIRNFAKGVESWLTNAM--QGCPQEMIN 328
+V + D + Y+ ++ +L L+ IP ++ A G L+ ++ Q +
Sbjct: 546 WVMKCDLIMYKKMIRMLSKLQLQLLIPQEQLLQLKQIADGYIKTLSTSLINSKVSQNFVM 605
Query: 329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQ-------- 380
+K+ F +L R + Q A +L ++ + N M D ++D H +
Sbjct: 606 MKLKLAKHFVNLLNRLIKVIETGQPASRILNDNNEKNTMTQDWMKLDIHGIICREMPCND 665
Query: 381 ---EQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTK 437
+ +++ + + +++SD +Q ++ ++AN++ N+ + P
Sbjct: 666 NNIDTLTYILTGEVVNLIKVKSDN----EQAPTMSDFANYISNLPSRF-------PEVN- 713
Query: 438 AARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
R FLL S + +R+++L FG++ ++R DEY+ + E
Sbjct: 714 -TRLFLLLASNLLTTCLREISLSGGEGFGAWWIVRCWIDEYLAWSFE 759
>gi|119583072|gb|EAW62668.1| kinesin family member 27, isoform CRA_b [Homo sapiens]
Length = 567
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 13/96 (13%)
Query: 347 LNHLAQAARAVLQNSTQINQMLT-DLNRVDFHNVQEQASWV---C---QCDA----SLVQ 395
L Q+ +A + +TQIN+ + D NR+ H+++EQ + + C QC + +
Sbjct: 366 LREALQSQQAGVSQTTQINREGSPDTNRI--HSLEEQVAQLQGECLGYQCCVEEAFTFLV 423
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEG 431
L+ +L +QQ+ L+EW N ++ V AVL F G
Sbjct: 424 DLKDTVRLNEKQQHKLQEWFNMIQEVRKAVLTSFRG 459
>gi|238880044|gb|EEQ43682.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 849
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 44/227 (19%), Positives = 97/227 (42%), Gaps = 27/227 (11%)
Query: 272 FVRRVDFLFYQNLVEVLIPDVLRP-IPGSLTSSIRNFAKGVESWLTNAM--QGCPQEMIN 328
+V + D + Y+ ++ +L L+ IP ++ A G L+ ++ Q +
Sbjct: 544 WVMKCDLIMYKKMIRMLSKLQLQLLIPQEQLLQLKQIADGYIKTLSTSLINSKVSQNFVM 603
Query: 329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQ-------- 380
+K+ F +L R + Q A +L + + N M D ++D H +
Sbjct: 604 MKLKLAKHFVNLLNRLIKVIETGQPASRILNDDNEKNTMTQDWMKLDIHGIICREMPCND 663
Query: 381 ---EQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTK 437
+ +++ + + +++SD +Q ++ ++AN++ N+ + P
Sbjct: 664 NNIDTLTYILTGEVVNLIKVKSDN----EQAPTMSDFANYISNLPSRF-------PEVN- 711
Query: 438 AARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
R FLL S + +R+++L FG++ ++R DEY+ + E
Sbjct: 712 -TRLFLLLASNLLTTCLREISLSGGEGFGAWWIVRCWIDEYLAWSFE 757
>gi|194387366|dbj|BAG60047.1| unnamed protein product [Homo sapiens]
Length = 535
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 13/96 (13%)
Query: 347 LNHLAQAARAVLQNSTQINQMLT-DLNRVDFHNVQEQASWV---C---QCDA----SLVQ 395
L Q+ +A + +TQIN+ + D NR+ H+++EQ + + C QC + +
Sbjct: 366 LREALQSQQAGVSQTTQINREGSPDTNRI--HSLEEQVAQLQGECLGYQCCVEEAFTFLV 423
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEG 431
L+ +L +QQ+ L+EW N ++ V AVL F G
Sbjct: 424 DLKDTVRLNEKQQHKLQEWFNMIQEVRKAVLTSFRG 459
>gi|119583074|gb|EAW62670.1| kinesin family member 27, isoform CRA_d [Homo sapiens]
Length = 821
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 13/96 (13%)
Query: 347 LNHLAQAARAVLQNSTQINQMLT-DLNRVDFHNVQEQASWV---C---QCDA----SLVQ 395
L Q+ +A + +TQIN+ + D NR+ H+++EQ + + C QC + +
Sbjct: 366 LREALQSQQAGVSQTTQINREGSPDTNRI--HSLEEQVAQLQGECLGYQCCVEEAFTFLV 423
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEG 431
L+ +L +QQ+ L+EW N ++ V AVL F G
Sbjct: 424 DLKDTVRLNEKQQHKLQEWFNMIQEVRKAVLTSFRG 459
>gi|426362160|ref|XP_004048248.1| PREDICTED: LOW QUALITY PROTEIN: kinesin-like protein KIF27 [Gorilla
gorilla gorilla]
Length = 983
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 13/96 (13%)
Query: 347 LNHLAQAARAVLQNSTQINQMLT-DLNRVDFHNVQEQASWV---------CQCDA-SLVQ 395
L Q+ +A + +TQIN+ + D NR+ H+++EQ + + C +A + +
Sbjct: 374 LREALQSQQAGVSQTTQINREGSPDTNRI--HSLEEQVAQLQGECLGYQCCVEEAFTFLV 431
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEG 431
L+ +L +QQ+ L+EW N ++ V AVL F G
Sbjct: 432 DLKDTVRLNEKQQHKLQEWFNMIQEVRKAVLTSFRG 467
>gi|429535822|ref|NP_001258856.1| kinesin-like protein KIF27 isoform B [Homo sapiens]
gi|30025501|gb|AAP04414.1| KIF27B [Homo sapiens]
Length = 1335
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 13/96 (13%)
Query: 347 LNHLAQAARAVLQNSTQINQMLT-DLNRVDFHNVQEQASWV---------CQCDA-SLVQ 395
L Q+ +A + +TQIN+ + D NR+ H+++EQ + + C +A + +
Sbjct: 366 LREALQSQQAGVSQTTQINREGSPDTNRI--HSLEEQVAQLQGECLGYQCCVEEAFTFLV 423
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEG 431
L+ +L +QQ+ L+EW N ++ V AVL F G
Sbjct: 424 DLKDTVRLNEKQQHKLQEWFNMIQEVRKAVLTSFRG 459
>gi|429535824|ref|NP_001258857.1| kinesin-like protein KIF27 isoform C [Homo sapiens]
gi|30025503|gb|AAP04415.1| KIF27C [Homo sapiens]
Length = 1304
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 13/96 (13%)
Query: 347 LNHLAQAARAVLQNSTQINQMLT-DLNRVDFHNVQEQASWV---------CQCDA-SLVQ 395
L Q+ +A + +TQIN+ + D NR+ H+++EQ + + C +A + +
Sbjct: 366 LREALQSQQAGVSQTTQINREGSPDTNRI--HSLEEQVAQLQGECLGYQCCVEEAFTFLV 423
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEG 431
L+ +L +QQ+ L+EW N ++ V AVL F G
Sbjct: 424 DLKDTVRLNEKQQHKLQEWFNMIQEVRKAVLTSFRG 459
>gi|114625186|ref|XP_001153364.1| PREDICTED: kinesin family member 27 isoform 1 [Pan troglodytes]
Length = 1305
Score = 38.9 bits (89), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 13/96 (13%)
Query: 347 LNHLAQAARAVLQNSTQINQMLT-DLNRVDFHNVQEQASWV---------CQCDA-SLVQ 395
L Q+ +A + +TQIN+ + D NR+ H+++EQ + + C +A + +
Sbjct: 366 LREALQSQQAGVSQTTQINREGSPDTNRI--HSLEEQVAQLQGECLGYQCCVEEAFTFLV 423
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEG 431
L+ +L +QQ+ L+EW N ++ V AVL F G
Sbjct: 424 DLKDTVRLNEKQQHKLQEWFNMIQEVRKAVLTSFRG 459
>gi|119583071|gb|EAW62667.1| kinesin family member 27, isoform CRA_a [Homo sapiens]
Length = 996
Score = 38.9 bits (89), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 13/96 (13%)
Query: 347 LNHLAQAARAVLQNSTQINQMLT-DLNRVDFHNVQEQASWV---C---QCDA----SLVQ 395
L Q+ +A + +TQIN+ + D NR+ H+++EQ + + C QC + +
Sbjct: 366 LREALQSQQAGVSQTTQINREGSPDTNRI--HSLEEQVAQLQGECLGYQCCVEEAFTFLV 423
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEG 431
L+ +L +QQ+ L+EW N ++ V AVL F G
Sbjct: 424 DLKDTVRLNEKQQHKLQEWFNMIQEVRKAVLTSFRG 459
>gi|30794488|ref|NP_060046.1| kinesin-like protein KIF27 isoform A [Homo sapiens]
gi|74750464|sp|Q86VH2.1|KIF27_HUMAN RecName: Full=Kinesin-like protein KIF27
gi|30025499|gb|AAP04413.1| KIF27A [Homo sapiens]
gi|187954611|gb|AAI40789.1| Kinesin family member 27 [Homo sapiens]
Length = 1401
Score = 38.5 bits (88), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 13/96 (13%)
Query: 347 LNHLAQAARAVLQNSTQINQMLT-DLNRVDFHNVQEQASWV---------CQCDA-SLVQ 395
L Q+ +A + +TQIN+ + D NR+ H+++EQ + + C +A + +
Sbjct: 366 LREALQSQQAGVSQTTQINREGSPDTNRI--HSLEEQVAQLQGECLGYQCCVEEAFTFLV 423
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEG 431
L+ +L +QQ+ L+EW N ++ V AVL F G
Sbjct: 424 DLKDTVRLNEKQQHKLQEWFNMIQEVRKAVLTSFRG 459
>gi|114625184|ref|XP_001153428.1| PREDICTED: kinesin family member 27 isoform 2 [Pan troglodytes]
Length = 1336
Score = 38.5 bits (88), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 13/96 (13%)
Query: 347 LNHLAQAARAVLQNSTQINQMLT-DLNRVDFHNVQEQASWV---------CQCDA-SLVQ 395
L Q+ +A + +TQIN+ + D NR+ H+++EQ + + C +A + +
Sbjct: 366 LREALQSQQAGVSQTTQINREGSPDTNRI--HSLEEQVAQLQGECLGYQCCVEEAFTFLV 423
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEG 431
L+ +L +QQ+ L+EW N ++ V AVL F G
Sbjct: 424 DLKDTVRLNEKQQHKLQEWFNMIQEVRKAVLTSFRG 459
>gi|114625182|ref|XP_520097.2| PREDICTED: kinesin family member 27 isoform 3 [Pan troglodytes]
Length = 1402
Score = 38.5 bits (88), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 13/96 (13%)
Query: 347 LNHLAQAARAVLQNSTQINQMLT-DLNRVDFHNVQEQASWV---------CQCDA-SLVQ 395
L Q+ +A + +TQIN+ + D NR+ H+++EQ + + C +A + +
Sbjct: 366 LREALQSQQAGVSQTTQINREGSPDTNRI--HSLEEQVAQLQGECLGYQCCVEEAFTFLV 423
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEG 431
L+ +L +QQ+ L+EW N ++ V AVL F G
Sbjct: 424 DLKDTVRLNEKQQHKLQEWFNMIQEVRKAVLTSFRG 459
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,758,714,417
Number of Sequences: 23463169
Number of extensions: 369545721
Number of successful extensions: 936223
Number of sequences better than 100.0: 629
Number of HSP's better than 100.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 933009
Number of HSP's gapped (non-prelim): 1973
length of query: 544
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 396
effective length of database: 8,886,646,355
effective search space: 3519111956580
effective search space used: 3519111956580
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)