BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7163
(544 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0V9K5|RFX3_XENTR Transcription factor RFX3 OS=Xenopus tropicalis GN=rfx3 PE=2 SV=2
Length = 749
Score = 449 bits (1156), Expect = e-125, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 297/488 (60%), Gaps = 94/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D + + G +
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVGDGFAGSGQS 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
A QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 GAS-VEQTVIAQSQHHQQFLDASRALPEFAEVEIS--SLPDGTTFE-------------- 347
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 348 ---------DIKSLQSLYRE-----------HCE-------------------------- 361
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWR---------SQDNNNGDECEEE 252
A LD +V L FS IE LW+ FWR S +G+ E E
Sbjct: 362 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSSPADGSTITESGNLSEIE 406
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L KSKL K + ++ D + YQ+LVE+LIPDVLRPIP +LT ++RNFAK +E
Sbjct: 407 SRLPKSKLILFCKNESIVKWMCNCDHMMYQSLVEILIPDVLRPIPSALTQAVRNFAKSLE 466
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL++AM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 467 GWLSSAMSNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 526
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD S+VQ+LE+DFK+TLQQQ++LE+WA WL NVV LKP+EG+
Sbjct: 527 RVDFANVQEQASWVCQCDDSMVQRLETDFKMTLQQQSTLEQWAAWLDNVVTQALKPYEGR 586
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 587 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 646
Query: 493 ETPIAVIG 500
E+PIAV+G
Sbjct: 647 ESPIAVMG 654
>sp|P48380|RFX3_HUMAN Transcription factor RFX3 OS=Homo sapiens GN=RFX3 PE=1 SV=2
Length = 749
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 295/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLN 527
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 647
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 648 ETPIAVMG 655
>sp|Q4R3I8|RFX3_MACFA Transcription factor RFX3 OS=Macaca fascicularis GN=RFX3 PE=2 SV=1
Length = 749
Score = 448 bits (1152), Expect = e-125, Method: Compositional matrix adjust.
Identities = 245/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 527
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 647
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 648 ETPIAVMG 655
>sp|P48381|RFX3_MOUSE Transcription factor RFX3 OS=Mus musculus GN=Rfx3 PE=1 SV=2
Length = 749
Score = 448 bits (1152), Expect = e-125, Method: Compositional matrix adjust.
Identities = 244/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
GNSKYHYYGIRVKPDSPLN + + + R ++YK + K D ++ + G
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
T QS +H D S A+P+F E+++S LP+ T E
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
D +++SL+RE CE
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362
Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
A LD +V L FS IE LW+ FWR + D E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPADGTTITESSNLSEIE 407
Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
L K+KL L K + ++ D YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
WL+NAM PQ MI KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLN 527
Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+ LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587
Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA TG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQVTG 647
Query: 493 ETPIAVIG 500
ETPIAV+G
Sbjct: 648 ETPIAVMG 655
>sp|A0JMF8|RFX3_DANRE Transcription factor RFX3 OS=Danio rerio GN=rfx3 PE=2 SV=1
Length = 765
Score = 422 bits (1085), Expect = e-117, Method: Compositional matrix adjust.
Identities = 240/489 (49%), Positives = 288/489 (58%), Gaps = 94/489 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYKLV-KTDSNS-NQYGSEGH 80
GNSKYHYYGIRVKPDSPLN + + + R +++K V K D S + + S G
Sbjct: 251 GNSKYHYYGIRVKPDSPLNRLQEDMQYMALRQQPVQQKQRFKPVQKMDGVSGDNFSSAGQ 310
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
T QS +H DGS LPE ++D ++
Sbjct: 311 HTPSAAEQTFIAQSQHHQQFLDGSR-------------ALPE---FVELDLGEAV----- 349
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 200
D + D +++L+RE CE
Sbjct: 350 ----DGVGPEDVKALQTLYRE-----------HCE------------------------- 369
Query: 201 VDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNN---------NGDECEE 251
A LD +V L F+ IE+LW+ FWR ++ N E
Sbjct: 370 ----------------AILDVVVNLQFNLIENLWQTFWRYSASSSVEGVTITENSGLSEI 413
Query: 252 EKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGV 311
E L +++L L + V ++ D L YQ LVE+LIPDVLRPIP +LT +IRNFAK +
Sbjct: 414 EGRLPRARLILLCRHEAVHKWMNTCDHLMYQALVEILIPDVLRPIPSALTQAIRNFAKSL 473
Query: 312 ESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDL 371
E WLTNAM P MIN KV+AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DL
Sbjct: 474 EGWLTNAMSSIPPRMINTKVSAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDL 533
Query: 372 NRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEG 431
NRVDF NVQEQASWVCQC+ +VQ+LE DFK TLQQQ+SLE+WA WL NVV +LKP+E
Sbjct: 534 NRVDFANVQEQASWVCQCEEGVVQRLEQDFKATLQQQSSLEQWAAWLDNVVTQILKPYED 593
Query: 432 KPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALAT 491
KP KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA AT
Sbjct: 594 KPTLPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQAT 653
Query: 492 GETPIAVIG 500
GET I V+G
Sbjct: 654 GETAIGVMG 662
>sp|B1WAV2|RFX2_XENTR DNA-binding protein RFX2 OS=Xenopus tropicalis GN=rfx2 PE=2 SV=1
Length = 694
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/291 (68%), Positives = 233/291 (80%), Gaps = 6/291 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQ----DNNN--GDECEEEKYLSKSKLFCLSKCVPV 269
+A +D ++ L F IE LW+ FW S+ D +N E E+E + K KL L K P+
Sbjct: 353 EATIDVVMNLQFQYIEKLWQAFWNSKPSSPDGSNPMNSEDEQEPIIPKDKLMVLCKYEPI 412
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++++
Sbjct: 413 MRWMRNCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMCDFPQQIVHA 472
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVCQC
Sbjct: 473 KVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQC 532
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFKLTLQQQ+SL++WANWL NVV VLKP EG P+F KAARQFLLKWSFY
Sbjct: 533 EEGMVQKLEQDFKLTLQQQSSLDQWANWLDNVVTQVLKPHEGSPSFPKAARQFLLKWSFY 592
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 593 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMG 643
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 115/231 (49%), Gaps = 29/231 (12%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRG 60
GNSKYHYYGIR+KPDSPLN + Y IR +P + P
Sbjct: 236 GNSKYHYYGIRLKPDSPLNRL--------QEDTQYMAIRQQPIH-------QKQRYRPAQ 280
Query: 61 KKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCL 120
K + + +NS+Q+ S + A QS +H D ++ PDFPE DL L
Sbjct: 281 KMDGMGENTANSSQHTSPEQSVAA--------QSQHHQQFIDTAHVFPDFPEPDLGNVLL 332
Query: 121 PEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQ----DNNN--GDEC 174
PE T+ D+ + +YR HCEA +D ++ L F IE LW+ FW S+ D +N E
Sbjct: 333 PEGITMTDIKNLQLMYRRHCEATIDVVMNLQFQYIEKLWQAFWNSKPSSPDGSNPMNSED 392
Query: 175 EEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
E+E + K KL L K P+ ++R D + YQ LVE+LIPD TL
Sbjct: 393 EQEPIIPKDKLMVLCKYEPIMRWMRNCDHILYQALVEILIPDVLRPVPSTL 443
>sp|A6QLW9|RFX2_BOVIN DNA-binding protein RFX2 OS=Bos taurus GN=RFX2 PE=2 SV=1
Length = 707
Score = 410 bits (1055), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/292 (68%), Positives = 230/292 (78%), Gaps = 7/292 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNG-------DECEEEKYLSKSKLFCLSKCVP 268
+A LD ++ L F IE LW FW S+ +++G DE E L K KL L KC P
Sbjct: 383 EATLDVVMNLQFHYIEKLWLSFWNSKSSSDGPTSLPASDEEPEGAVLPKDKLVSLCKCDP 442
Query: 269 VQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMIN 328
V ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 443 VLRWMRTCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVIQ 502
Query: 329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQ 388
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVCQ
Sbjct: 503 TKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQ 562
Query: 389 CDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSF 448
C+ +VQ+LE DFKLTLQQQ+SL++WA+WL NVV VLK G P+F KAARQFLLKWSF
Sbjct: 563 CEEGVVQRLEQDFKLTLQQQSSLDQWASWLDNVVTQVLKQHAGSPSFPKAARQFLLKWSF 622
Query: 449 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 623 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 674
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 110/212 (51%), Gaps = 18/212 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLVKTDSNSNQYGSEG--H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ + + + GS H
Sbjct: 266 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPVHQKPRYRPAQKTDSLGESGSHSSLH 325
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T Q + QS +H D S+ P+FP DL L E T+ DV + YR HC
Sbjct: 326 STPEQAMAA---QSQHHQQYIDVSHVFPEFPAPDLGSVLLQESITLHDVKALQLAYRRHC 382
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNNG-------DECEEEKYLSKSKLFCLSKCVP 193
EA LD ++ L F IE LW FW S+ +++G DE E L K KL L KC P
Sbjct: 383 EATLDVVMNLQFHYIEKLWLSFWNSKSSSDGPTSLPASDEEPEGAVLPKDKLVSLCKCDP 442
Query: 194 VQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
V ++R D + YQ LVE+LIPD TL
Sbjct: 443 VLRWMRTCDHILYQALVEILIPDVLRPVPSTL 474
>sp|Q32NR3|RFX2_XENLA DNA-binding protein RFX2 OS=Xenopus laevis GN=rfx2 PE=2 SV=1
Length = 694
Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/291 (67%), Positives = 231/291 (79%), Gaps = 6/291 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQ----DNNN--GDECEEEKYLSKSKLFCLSKCVPV 269
+A +D ++ L F IE LW+ FW S+ D +N E E+E + KL L K P+
Sbjct: 353 EATIDVVMNLQFQYIEKLWQAFWNSKPSSPDGSNPMSSEDEQEPIIPNEKLMVLCKYEPI 412
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++++
Sbjct: 413 MRWMRNCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMCDFPQQIVHA 472
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVCQC
Sbjct: 473 KVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQC 532
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
D +VQ+LE DFKLTLQQQ+SL++WANWL NVV VLKP EG +F KAARQFLLKWSFY
Sbjct: 533 DEGMVQKLEQDFKLTLQQQSSLDQWANWLDNVVTQVLKPHEGSTSFPKAARQFLLKWSFY 592
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 593 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMG 643
Score = 142 bits (358), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 113/231 (48%), Gaps = 29/231 (12%)
Query: 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRG 60
GNSKYHYYGIR+KPDSPLN I Y IR +P + P
Sbjct: 236 GNSKYHYYGIRLKPDSPLNRI--------QEDAQYMAIRQQPIH-------QKQRYRPAQ 280
Query: 61 KKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCL 120
K + + +NS+Q+ S + A QS +H D S+ PDFP DL L
Sbjct: 281 KIDGMGENPANSSQHASPEQSVAA--------QSQHHQQFIDTSHVFPDFPAPDLGSLLL 332
Query: 121 PEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQ----DNNN--GDEC 174
PE T+ D+ + +YR HCEA +D ++ L F IE LW+ FW S+ D +N E
Sbjct: 333 PEGITMTDIKNLQLMYRRHCEATIDVVMNLQFQYIEKLWQAFWNSKPSSPDGSNPMSSED 392
Query: 175 EEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
E+E + KL L K P+ ++R D + YQ LVE+LIPD TL
Sbjct: 393 EQEPIIPNEKLMVLCKYEPIMRWMRNCDHILYQALVEILIPDVLRPVPSTL 443
>sp|P22670|RFX1_HUMAN MHC class II regulatory factor RFX1 OS=Homo sapiens GN=RFX1 PE=1
SV=2
Length = 979
Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust.
Identities = 200/306 (65%), Positives = 238/306 (77%), Gaps = 8/306 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR SQ + E EK L K+ L LSK PV
Sbjct: 617 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPV 676
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 677 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 736
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 737 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 796
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 797 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSAGFPKAAKLFLLKWSFY 856
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 857 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLAT 914
Query: 510 SQNPMD 515
S NP+D
Sbjct: 915 SLNPLD 920
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 108/204 (52%), Gaps = 17/204 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDEN-----GSPRGKKYKLV---KTDSNSNQYGSEGH 80
GNSKYHYYG+R+K SPL + + D+ G P +K +L K + +N
Sbjct: 500 GNSKYHYYGLRIKASSPLLRL-MEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGQQ 558
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+ G S+ S Q + D S ++PDF E+DL LPE D+ F+ +YREHC
Sbjct: 559 PSTG--LSDISAQVQQYQQFLDASRSLPDFTELDLQGKVLPEGVGPGDIKAFQVLYREHC 616
Query: 141 EAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 194
EA +D +V L F+ +E+LW+ FWR SQ + E EK L K+ L LSK PV
Sbjct: 617 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPV 676
Query: 195 QAFVRRVDFLFYQNLVEVLIPDAF 218
+ + D + YQ LVE+LIPD
Sbjct: 677 LQWTKHCDNVLYQGLVEILIPDVL 700
>sp|P48379|RFX2_MOUSE DNA-binding protein RFX2 OS=Mus musculus GN=Rfx2 PE=2 SV=2
Length = 717
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 198/293 (67%), Positives = 227/293 (77%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A LD ++ L F IE LW FW + ++ DE E L K KL L KC
Sbjct: 373 EATLDVVMNLQFQYIEKLWLSFWNCKATSSDSCASLPASDEDPEVTLLPKEKLISLCKCE 432
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE LIPDVLRP+P SLT +IRNFAK +E WL NAM G PQ++I
Sbjct: 433 PILQWMRSCDHILYQTLVETLIPDVLRPVPSSLTQAIRNFAKSLEGWLINAMSGFPQQVI 492
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 493 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 552
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ SLVQ+LE DFK+TLQQQ+SL++WA+WL NVV VLK G P+F KAARQFLLKWS
Sbjct: 553 QCEESLVQRLEHDFKVTLQQQSSLDQWASWLDNVVTQVLKQHSGSPSFPKAARQFLLKWS 612
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 613 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMG 665
Score = 135 bits (341), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 104/205 (50%), Gaps = 17/205 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLV-KTDSNSNQYGSEGHT 81
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ K+DS + GS
Sbjct: 256 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPTHQKPRYRPAQKSDSLGD--GSAHSN 313
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
G + + Q +H D S+ P+FP DL L E T+ DV + +YR HCE
Sbjct: 314 MHGMPDQAMATQGQHHQQYIDVSHVFPEFPAPDLGSTLLQESVTLHDVKALQLVYRRHCE 373
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCVP 193
A LD ++ L F IE LW FW + ++ DE E L K KL L KC P
Sbjct: 374 ATLDVVMNLQFQYIEKLWLSFWNCKATSSDSCASLPASDEDPEVTLLPKEKLISLCKCEP 433
Query: 194 VQAFVRRVDFLFYQNLVEVLIPDAF 218
+ ++R D + YQ LVE LIPD
Sbjct: 434 ILQWMRSCDHILYQTLVETLIPDVL 458
>sp|P48377|RFX1_MOUSE MHC class II regulatory factor RFX1 OS=Mus musculus GN=Rfx1 PE=2
SV=2
Length = 963
Score = 408 bits (1048), Expect = e-113, Method: Compositional matrix adjust.
Identities = 198/306 (64%), Positives = 237/306 (77%), Gaps = 8/306 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWR------SQDNNNGDECEEEKYLSKSKLFCLSKCVPV 269
+A +D +V L F+ +E+LW+ FWR S+ E EK L ++ L LSK PV
Sbjct: 601 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPRASLVLLSKFQPV 660
Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
+ + D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM P+EM+ +
Sbjct: 661 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 720
Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 721 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 780
Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
+ +VQ+LE DFK+TLQQQNSLE+WA WL VV+ VLKP++G F KAA+ FLLKWSFY
Sbjct: 781 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSSGFPKAAKLFLLKWSFY 840
Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G E + +
Sbjct: 841 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLAT 898
Query: 510 SQNPMD 515
S NP+D
Sbjct: 899 SLNPLD 904
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 105/200 (52%), Gaps = 10/200 (5%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKY-KLVKTDSNSNQYGSEGHTTAGQTN 87
GNSKYHYYG+R+K SPL + ++ + RG+ + + + G GQ +
Sbjct: 485 GNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGVANGVAVGQQS 544
Query: 88 ---SNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFL 144
S+ S Q + D S ++PDF E+DL LPE D+ F+ +YREHCEA +
Sbjct: 545 TGLSDISAQVQQYQQFLDASRSLPDFAELDLQGKVLPEGVGPGDIKAFQVLYREHCEAIV 604
Query: 145 DAIVTLDFSTIESLWREFWR------SQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFV 198
D +V L F+ +E+LW+ FWR S+ E EK L ++ L LSK PV +
Sbjct: 605 DVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPRASLVLLSKFQPVLQWT 664
Query: 199 RRVDFLFYQNLVEVLIPDAF 218
+ D + YQ LVE+LIPD
Sbjct: 665 KHCDNVLYQGLVEILIPDVL 684
>sp|B2GV50|RFX2_RAT DNA-binding protein RFX2 OS=Rattus norvegicus GN=Rfx2 PE=2 SV=1
Length = 692
Score = 407 bits (1046), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/293 (67%), Positives = 227/293 (77%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A LD ++ L F IE LW FW + ++ DE E L K KL L KC
Sbjct: 348 EATLDVVMNLQFQYIEKLWLSFWNCKATSSDGRASLPASDEEPEVTLLPKDKLISLCKCE 407
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE LIPDVLRP+P SLT +IRNFAK +E WL NAM G PQ++I
Sbjct: 408 PILQWMRSCDHILYQALVETLIPDVLRPVPSSLTQAIRNFAKSLEGWLINAMSGFPQQVI 467
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 468 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 527
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ SLVQ+LE DFK+TLQQQ+SL++WA+WL NVV VLK G P+F KAARQFLLKWS
Sbjct: 528 QCEESLVQRLEHDFKVTLQQQSSLDQWASWLDNVVTQVLKQHAGSPSFPKAARQFLLKWS 587
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 588 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMG 640
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 104/206 (50%), Gaps = 19/206 (9%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLV-KTDS-NSNQYGSEGH 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ K+DS S H
Sbjct: 231 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPTHQKPRYRPAQKSDSLGDGSAHSNMH 290
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T Q + Q +H D S+ P+FP DL L E T+ DV + +YR HC
Sbjct: 291 STPEQAMAA---QGQHHQQYIDVSHVFPEFPAPDLGSTLLQESVTLHDVKALQLVYRRHC 347
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA LD ++ L F IE LW FW + ++ DE E L K KL L KC
Sbjct: 348 EATLDVVMNLQFQYIEKLWLSFWNCKATSSDGRASLPASDEEPEVTLLPKDKLISLCKCE 407
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAF 218
P+ ++R D + YQ LVE LIPD
Sbjct: 408 PILQWMRSCDHILYQALVETLIPDVL 433
>sp|Q5RDR2|RFX2_PONAB DNA-binding protein RFX2 OS=Pongo abelii GN=RFX2 PE=2 SV=1
Length = 704
Score = 406 bits (1043), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/306 (65%), Positives = 236/306 (77%), Gaps = 8/306 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 378 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 437
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 438 PILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 497
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 498 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 557
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL +VV VLK G P+F KAARQFLLKWS
Sbjct: 558 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWS 617
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPV 507
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G + S V
Sbjct: 618 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMGERLSQNV 677
Query: 508 ESSQNP 513
S+ P
Sbjct: 678 TSALWP 683
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 112/213 (52%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLV-KTDSNSNQYGSEG-H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ KTDS + G H
Sbjct: 261 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSSSHSGLH 320
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T QT + Q+ +H D S+ P+FP DL L + T+ DV + +YR HC
Sbjct: 321 STPEQTTAA---QNQHHQQYIDVSHVFPEFPAPDLGSVLLQDGVTLHDVKALQLVYRRHC 377
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 378 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 437
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 438 PILRWMRSCDHILYQALVEILIPDVLRPVPSTL 470
>sp|Q4R3Z4|RFX2_MACFA DNA-binding protein RFX2 OS=Macaca fascicularis GN=RFX2 PE=2 SV=1
Length = 723
Score = 404 bits (1038), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/293 (66%), Positives = 230/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 378 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 437
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 438 PILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 497
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 498 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 557
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL +VV VLK G P+F KAARQFLLKWS
Sbjct: 558 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWS 617
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 618 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 670
Score = 136 bits (342), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 110/213 (51%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLVKTDSNSNQYGSEG--H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ + + GS H
Sbjct: 261 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSSLH 320
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T QT + QS +H D S+ P+FP DL L + T+ DV + +YR HC
Sbjct: 321 STPEQTMAA---QSQHHQQYIDVSHVFPEFPAPDLGSVLLQDGVTLHDVKALQLVYRRHC 377
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 378 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 437
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 438 PILRWMRSCDHILYQALVEILIPDVLRPVPSTL 470
>sp|P48378|RFX2_HUMAN DNA-binding protein RFX2 OS=Homo sapiens GN=RFX2 PE=2 SV=2
Length = 723
Score = 404 bits (1038), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/293 (66%), Positives = 230/293 (78%), Gaps = 8/293 (2%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
+A +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 378 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 437
Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
P+ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM PQ++I
Sbjct: 438 PILRWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVI 497
Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
KV V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 498 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 557
Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL +VV VLK G P+F KAARQFLLKWS
Sbjct: 558 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDSVVTQVLKQHAGSPSFPKAARQFLLKWS 617
Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 618 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 670
Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 112/213 (52%), Gaps = 19/213 (8%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGK------KYKLV-KTDSNSNQYGSEG-H 80
GNSKYHYYGIR+KPDSPLN + + + R + +Y+ KTDS + G H
Sbjct: 261 GNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQQPMHQKPRYRPAQKTDSLGDSGSHSGLH 320
Query: 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
+T QT + QS +H D S+ P+FP DL L + T+ DV + +YR HC
Sbjct: 321 STPEQTMAV---QSQHHQQYIDVSHVFPEFPAPDLGSFLLQDGVTLHDVKALQLVYRRHC 377
Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 192
EA +D ++ L F IE LW FW S+ +++ DE E L K KL L +C
Sbjct: 378 EATVDVVMNLQFHYIEKLWLSFWNSKASSSDGPTSLPASDEDPEGAVLPKDKLISLCQCD 437
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P+ ++R D + YQ LVE+LIPD TL
Sbjct: 438 PILRWMRSCDHILYQALVEILIPDVLRPVPSTL 470
>sp|Q5EAP5|RFX2_DANRE DNA-binding protein RFX2 OS=Danio rerio GN=rfx2 PE=2 SV=1
Length = 734
Score = 400 bits (1029), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/294 (65%), Positives = 230/294 (78%), Gaps = 9/294 (3%)
Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDN---------NNGDECEEEKYLSKSKLFCLSKC 266
+A LD ++ L F IE LW+ FW S N+ ++ E+ + + KL L K
Sbjct: 385 EATLDVVMNLQFHLIEKLWQTFWHSTAPSSDGATTIPNSEEDVEDIRGFPRDKLITLCKY 444
Query: 267 VPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEM 326
P++ ++R D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLT+AM P E+
Sbjct: 445 EPIKQWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTSAMTNFPPEI 504
Query: 327 INIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWV 386
I+ K V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWV
Sbjct: 505 ISTKAAVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWV 564
Query: 387 CQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKW 446
CQCD S+VQ+LE DFK TLQQQ+SL++WA WL NVVN VLKP++G +F +AARQFLLKW
Sbjct: 565 CQCDESVVQRLELDFKATLQQQSSLDQWAAWLDNVVNQVLKPYDGSLSFPRAARQFLLKW 624
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 625 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMG 678
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 107/213 (50%), Gaps = 16/213 (7%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDE----NGSPRGKKYKLV---KTDSNSNQYGSEGHT 81
GNSKYHYYGIR+KPDSPLN + + +P +K + K D + S
Sbjct: 266 GNSKYHYYGIRLKPDSPLNRMQEDTQYMAMRQTPVHQKQRFKPFHKMDGMGDSLNSGSQH 325
Query: 82 TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
+ + + Q +H D S+ +P FP +DL LPE ++ DV +S YR HCE
Sbjct: 326 LSSTPEQSVAAQCQHHQQYIDVSHVLPPFPSLDLGSCPLPESISMTDVKKLQSSYRIHCE 385
Query: 142 AFLDAIVTLDFSTIESLWREFWRSQD---------NNNGDECEEEKYLSKSKLFCLSKCV 192
A LD ++ L F IE LW+ FW S N+ ++ E+ + + KL L K
Sbjct: 386 ATLDVVMNLQFHLIEKLWQTFWHSTAPSSDGATTIPNSEEDVEDIRGFPRDKLITLCKYE 445
Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTL 225
P++ ++R D + YQ LVE+LIPD TL
Sbjct: 446 PIKQWMRSCDHILYQALVEILIPDVLRPVPSTL 478
>sp|Q09555|DAF19_CAEEL RFX-like transcription factor daf-19 OS=Caenorhabditis elegans
GN=daf-19 PE=2 SV=3
Length = 805
Score = 225 bits (573), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 119/303 (39%), Positives = 176/303 (58%), Gaps = 18/303 (5%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
L I +DF+++E W +FW N G + + + L VQ ++ VD
Sbjct: 496 ILALIKNIDFASVEDTWSKFW---SGNFG--------VDRDHISALCTLDQVQDYIIEVD 544
Query: 278 FLFYQNLVEVLIPDVL-RPIPGSLTSSIRNFAKGVESWLTNAMQ--GCPQEMINIKVTAV 334
YQ +V+ LIP+VL + +T + R FAK ++ +L ++ + + K+ A+
Sbjct: 545 LALYQTIVDTLIPNVLLSELSTGMTQTCRTFAKNIDVYLRKSLMLANLGEFFVKKKIQAI 604
Query: 335 GAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLV 394
Q L+RYTSLNHLA A+R VL Q+ QM D RVD + V +QA W+C CD+ +V
Sbjct: 605 KYLQQGLKRYTSLNHLAHASRGVLMKPEQVQQMYQDYIRVDINTVHQQAGWICGCDSVMV 664
Query: 395 QQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPN--FTKAARQFLLKWSFYSSM 452
+ + FK LQ+ +++E WA WL+++V+ VL + KP +QFLL WSFY+SM
Sbjct: 665 HHVNNAFKHNLQRMSAMEVWAEWLESIVDQVLAKYHDKPANVIANVGKQFLLNWSFYTSM 724
Query: 453 VIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVESSQN 512
+IRDLTLRSA SFGSF LIRLL D+YM+YLIE ++A A + I VI + + P+ + N
Sbjct: 725 IIRDLTLRSAMSFGSFTLIRLLADDYMYYLIESKIAKAGKQQLITVIRADKDWPL--TTN 782
Query: 513 PMD 515
P +
Sbjct: 783 PQE 785
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 127 EDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLF 186
E++++ IY C L I +DF+++E W +FW N G + + +
Sbjct: 480 EELNSLIDIYEILCREILALIKNIDFASVEDTWSKFW---SGNFG--------VDRDHIS 528
Query: 187 CLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVT 224
L VQ ++ VD YQ +V+ LIP+ L + T
Sbjct: 529 ALCTLDQVQDYIIEVDLALYQTIVDTLIPNVLLSELST 566
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 1 GNSKYHYYGIRVKPDSPLNNI 21
GNSKYHYYGIR+K S L+++
Sbjct: 321 GNSKYHYYGIRLKDSSTLHSM 341
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 29 GNSKYHYYGIRVKPDSPLNNI 49
GNSKYHYYGIR+K S L+++
Sbjct: 321 GNSKYHYYGIRLKDSSTLHSM 341
>sp|Q33E94|RFX4_HUMAN Transcription factor RFX4 OS=Homo sapiens GN=RFX4 PE=1 SV=2
Length = 735
Score = 167 bits (422), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 212 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCD----ASL 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 317 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSRDEHRKL 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 377 ITQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 437 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 469
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKKEVSKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +P+FP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 167 AYSPRSK----LG---TLLPEFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>sp|Q7TNK1|RFX4_MOUSE Transcription factor RFX4 OS=Mus musculus GN=Rfx4 PE=1 SV=1
Length = 735
Score = 165 bits (418), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 145/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 212 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDAS----L 393
+Q+LRR TSLNHL QA+R V+ ++ QML D VD ++ +Q + + L
Sbjct: 317 SQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLSSITKQTLYTMEDSRDEHRRL 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L++Q+ +E + WL +V+ + K + K A+QFLL WS + +
Sbjct: 377 IIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 437 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 469
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVSETGKREVTKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +PDFP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 167 AYSPRSK----LG---TLLPDFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>sp|A2BGA0|RFX4_DANRE Transcription factor RFX4 OS=Danio rerio GN=rfx4 PE=2 SV=1
Length = 735
Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/273 (34%), Positives = 146/273 (53%), Gaps = 21/273 (7%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD ++ +F ++S FW+ + L L V V D
Sbjct: 212 ILDTVIRANFDEVQSFLLHFWQG--------------MPPHMLPVLGSSTVVN-IVGVCD 256
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ + VL+P VL+ +P SLT IR FAK ++ WL A+ P+ + NIK F
Sbjct: 257 SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRF 316
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDAS----L 393
+Q+L+R TSLNHL QA+R V+ ++ QML D VD +++ +Q + + L
Sbjct: 317 SQILKRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSREDQRRL 376
Query: 394 VQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK--PNFTKAARQFLLKWSFYSS 451
+ QL +F L+ Q+ +E + WL ++V + GK + + A+QFLL WS + +
Sbjct: 377 IIQLYQEFDRLLEDQSPIEAYIEWLDSMVERCVVRVAGKRPGSLKRVAQQFLLMWSCFGT 436
Query: 452 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
VIRD+TL SA SFGSFHLI L++D+Y+ YL+E
Sbjct: 437 RVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLE 469
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G SKYHYYGI VK S + Y ++ + + G +
Sbjct: 123 GQSKYHYYGIAVKESS----------------QYYDVMYSKKGAAWVNETGKKEVTKQTV 166
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEI-DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAI 147
SP+S LG +PDFP + DL+ LP E V TF +YR HC+ LD +
Sbjct: 167 AYSPRSK----LG---TLLPDFPNVKDLN---LPASLPEEKVSTFIMMYRTHCQRILDTV 216
Query: 148 VTLDFSTIESLWREFWR 164
+ +F ++S FW+
Sbjct: 217 IRANFDEVQSFLLHFWQ 233
>sp|Q8HWS3|RFX6_HUMAN DNA-binding protein RFX6 OS=Homo sapiens GN=RFX6 PE=1 SV=2
Length = 928
Score = 145 bits (367), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 146/280 (52%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 275 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 319
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + + K+ V F
Sbjct: 320 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRF 379
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ RVD +++ QA S ++ +
Sbjct: 380 VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIERVDLNSIGSQALLTISGSTDTESGI 439
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 440 YTEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDFLLKW 499
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 500 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 539
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 102/280 (36%), Gaps = 64/280 (22%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G+SKYHYYGI +K S + S + G R KL + +Y T
Sbjct: 186 GHSKYHYYGIGIKESSAYYHSVYSGK-GLTRFSGSKLKNEGGFTRKYSLSSKT------- 237
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEID--LSEDCLPEDCTIEDVDTFRSIYREHCEAFLDA 146
+P+FP + + C+ +D VDT +Y+ HC+ LD
Sbjct: 238 ---------------GTLLPEFPSAQHLVYQGCISKD----KVDTLIMMYKTHCQCILDN 278
Query: 147 IVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFY 206
+ +F I+ FW+ ++ E + +FC+ D + Y
Sbjct: 279 AINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CDSILY 323
Query: 207 QNLVEVLIPDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLS 264
+ L +VLIP + +L D W E W N E +K + + F
Sbjct: 324 KVLTDVLIPATMQEMPESLLADIRNFAKNW-EQWVVSSLENLPEALTDKKIPIVRRF--- 379
Query: 265 KCVPVQAFVRRVDF----------LFYQNLVEVLIPDVLR 294
V + R+ F LF Q++V ++ D+ R
Sbjct: 380 ----VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIER 415
>sp|Q5RJA1|RFX6_DANRE DNA-binding protein RFX6 OS=Danio rerio GN=rfx6 PE=2 SV=2
Length = 848
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 146/278 (52%), Gaps = 24/278 (8%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + ++F I++ FW+ + + L L V V F D
Sbjct: 207 ILDNAINVNFEEIQNFLLHFWQG--------------MPEHLLPLLENPVIVDIFCV-CD 251
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + KV F
Sbjct: 252 SILYKVLTDVLIPATMQDMPESLLADIRNFAKHWEHWMLSSLENLPEILSEKKVPIARRF 311
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA--SWVCQCDASLVQ 395
L+R TS HLAQ AR L + + M+ D+++VD +++ QA S D+
Sbjct: 312 VSSLKRQTSFLHLAQIARPALFDQIVVTSMVNDIDKVDLNSIGSQALLSVTNDQDSDFYS 371
Query: 396 QLES-----DFKLTLQQQNSLEEWANWLKNVV-NAVLKPF-EGKPNFTKAARQFLLKWSF 448
+ +S + K L++ ++E + WL +VV V+KP + + K A+ FLLKWSF
Sbjct: 372 EYDSISVFQELKDLLRKNATVESFIEWLDSVVEQKVIKPSKQNGRSVKKRAQDFLLKWSF 431
Query: 449 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
+ + V+ +LTL +A SFGSFHLIR+L DEY+ IE Q
Sbjct: 432 FGARVMHNLTLNNATSFGSFHLIRMLLDEYILLAIETQ 469
>sp|D2HNW6|RFX6_AILME DNA-binding protein RFX6 OS=Ailuropoda melanoleuca GN=RFX6 PE=3
SV=2
Length = 928
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 146/280 (52%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 275 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 319
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ + + K+ V F
Sbjct: 320 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALTDKKIPIVRRF 379
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ +VD +++ QA S ++ +
Sbjct: 380 VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIEKVDLNSIGSQALLTISGSTDTESDI 439
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 440 YTEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKKRAQDFLLKW 499
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 500 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 539
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 101/278 (36%), Gaps = 64/278 (23%)
Query: 29 GNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNS 88
G+SKYHYYGI +K S + S + G R KL + +Y T
Sbjct: 186 GHSKYHYYGIGIKESSAYYHSVYSGK-GLTRFSGSKLKNEGGFTRKYSLSSKT------- 237
Query: 89 NPSPQSGNHNFLGDGSNAIPDFPEID--LSEDCLPEDCTIEDVDTFRSIYREHCEAFLDA 146
+P+FP + + C+ +D VDT +Y+ HC+ LD
Sbjct: 238 ---------------GTLLPEFPSAQHLVYQGCISKD----KVDTLIMMYKTHCQCILDN 278
Query: 147 IVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFY 206
+ +F I+ FW+ ++ E + +FC+ D + Y
Sbjct: 279 AINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CDSILY 323
Query: 207 QNLVEVLIPDAFLDAIVTL--DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLS 264
+ L +VLIP + +L D W E W N E +K + + F
Sbjct: 324 KVLTDVLIPATMQEMPESLLADIRNFAKNW-EQWVVSSLENLPEALTDKKIPIVRRF--- 379
Query: 265 KCVPVQAFVRRVDF----------LFYQNLVEVLIPDV 292
V + R+ F LF Q++V ++ D+
Sbjct: 380 ----VSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDI 413
>sp|Q8C7R7|RFX6_MOUSE DNA-binding protein RFX6 OS=Mus musculus GN=Rfx6 PE=1 SV=2
Length = 927
Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 147/280 (52%), Gaps = 26/280 (9%)
Query: 218 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 277
LD + +F I+ FW+ ++ E + +FC+ D
Sbjct: 274 ILDNAINGNFEEIQHFLLHFWQGMPDHLLPLLENPVII---DIFCV------------CD 318
Query: 278 FLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAF 337
+ Y+ L +VLIP ++ +P SL + IRNFAK E W+ ++++ P+ +I+ K+ + F
Sbjct: 319 SILYKVLTDVLIPATMQEMPESLLADIRNFAKNWEQWVVSSLENLPEALIDKKIPILRRF 378
Query: 338 AQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA----SWVCQCDASL 393
L+R TS HLAQ AR L + +N M++D+ +VD +++ QA S ++ +
Sbjct: 379 VSSLKRQTSFLHLAQIARPALFDQHVVNAMVSDIEKVDLNSIGSQALLTISNSTDTESDI 438
Query: 394 VQQLES-----DFKLTLQQQNSLEEWANWLKNVV--NAVLKPFEGKPNFTKAARQFLLKW 446
+ +S + K L++ ++E + WL VV + + + K A+ FLLKW
Sbjct: 439 YSEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKMSKQNGRSLKKRAQDFLLKW 498
Query: 447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ 486
SF+ + V+ +LTL +A+SFGSFHLIR+L DEY+ +E Q
Sbjct: 499 SFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQ 538
>sp|D3YU81|RFX8_MOUSE DNA-binding protein RFX8 OS=Mus musculus GN=Rfx8 PE=3 SV=1
Length = 596
Score = 102 bits (254), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 126/268 (47%), Gaps = 24/268 (8%)
Query: 226 DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLV 285
+ +E L FW+S+ + L V+ + D Y+ L
Sbjct: 194 ELEKVEDLITSFWKSRQQDT---------------VMLMSLPDVRQLLGCYDMQLYKGLE 238
Query: 286 EVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYT 345
++L+PD L + S+R F+K + WL A++G P + K+ V F + LRR T
Sbjct: 239 DMLLPDFLEDVSIQYLKSVRLFSKRFKLWLLGALEGFPAILQISKLKEVTGFVKRLRRKT 298
Query: 346 SLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLT- 404
L+++A+ + VL+NS +I + +DL + + + V + D+ ++ ES ++
Sbjct: 299 YLSNMAKTMKMVLKNSRRIGLLKSDLRAIIREGTLDISKKVLEGDSDHEEEPESHTEMKC 358
Query: 405 -------LQQQNSLEEWANWL-KNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRD 456
L+ L E N + N+ V +P + K +F K A F LKW+F + V +
Sbjct: 359 LGCLISLLETSTDLAELLNCVSSNLQVLVFQPSKNKEDFIKLAASFQLKWNFLLTAVSKA 418
Query: 457 LTLRSAASFGSFHLIRLLYDEYMFYLIE 484
+TL SFG++HL LL EY+ +++E
Sbjct: 419 MTLSHRDSFGAWHLFHLLLLEYVIHILE 446
>sp|Q6ZV50|RFX8_HUMAN DNA-binding protein RFX8 OS=Homo sapiens GN=RFX8 PE=2 SV=2
Length = 586
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 138/307 (44%), Gaps = 27/307 (8%)
Query: 230 IESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLI 289
+E L FW+S + +S + L KC VQ Y+ + +VL+
Sbjct: 193 VEDLLTSFWKSLQQDT------VMLMSLPDVCQLFKCYDVQ---------LYKGIEDVLL 237
Query: 290 PDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNH 349
D L + S++ F+K + WL NA++G P + K+ V F + LRR T L++
Sbjct: 238 HDFLEDVSIQYLKSVQLFSKKFKLWLLNALEGVPALLQISKLKEVTLFVKRLRRKTYLSN 297
Query: 350 LAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLT----- 404
+A+ R VL++ +++ + +DL + + D S +LE++ ++
Sbjct: 298 MAKTMRMVLKSKRRVSVLKSDLQAIINQGTLATSKKALASDRSGADELENNPEMKCLRNL 357
Query: 405 ---LQQQNSLEEWANWLKNVVNA-VLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLR 460
L L + + L + + A V + K FTK A F L+W+ + V + +TL
Sbjct: 358 ISLLGTSTDLRVFLSCLSSHLQAFVFQTSRSKEEFTKLAASFQLRWNLLLTAVSKAMTLC 417
Query: 461 SAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVESSQNPMDNGLYA 520
SFGS+HL LL EYM ++++ + E + + KE P + + D L+
Sbjct: 418 HRDSFGSWHLFHLLLLEYMIHILQSCLEEEEEEEDMGTV--KEMLPDDPTLGQPDQALF- 474
Query: 521 HGQNNIL 527
H N+ L
Sbjct: 475 HSLNSSL 481
>sp|P48383|SAK1_SCHPO Protein sak1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sak1 PE=1 SV=2
Length = 766
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/234 (20%), Positives = 98/234 (41%), Gaps = 23/234 (9%)
Query: 272 FVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKV 331
++ R D + Y+ ++++L P L+ +P + +R+ A+ + + +++ ++ +K
Sbjct: 443 WIERSDTVMYREILKLLFPMTLQVVPPPVLVLLRHLAENLVNHISSIYASHSSCLLQVKS 502
Query: 332 TAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRV--------------DFH 377
F+ +L R +N A AA L N + + D R D
Sbjct: 503 ETAAIFSNLLSRLLRVNDTAHAAARFLANPADRHLICNDWERFVSTRFIVHRELMCNDKE 562
Query: 378 NVQEQASW-----VCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
V W C + L+ L+ + + N +E + V++ + F
Sbjct: 563 AVAALDEWYSILSTCSNPSELLDPLKDKHEASDTSMNRVE--LRQIDGVLDRMADFFLEL 620
Query: 433 PNF--TKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIE 484
P+ + + R FLL + V+R++T+ +FG+ +IR DEYM ++ E
Sbjct: 621 PSRFPSCSPRMFLLCLGALQTSVLREITVSGGEAFGALWVIRCWVDEYMTWVAE 674
>sp|Q86VH2|KIF27_HUMAN Kinesin-like protein KIF27 OS=Homo sapiens GN=KIF27 PE=2 SV=1
Length = 1401
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 13/96 (13%)
Query: 347 LNHLAQAARAVLQNSTQINQMLT-DLNRVDFHNVQEQASWV---------CQCDA-SLVQ 395
L Q+ +A + +TQIN+ + D NR+ H+++EQ + + C +A + +
Sbjct: 366 LREALQSQQAGVSQTTQINREGSPDTNRI--HSLEEQVAQLQGECLGYQCCVEEAFTFLV 423
Query: 396 QLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEG 431
L+ +L +QQ+ L+EW N ++ V AVL F G
Sbjct: 424 DLKDTVRLNEKQQHKLQEWFNMIQEVRKAVLTSFRG 459
>sp|Q65N90|TOP3_BACLD DNA topoisomerase 3 OS=Bacillus licheniformis (strain DSM 13 / ATCC
14580) GN=topB PE=3 SV=2
Length = 727
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 301 TSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLA 351
TS R F V S L A+QG P ++++K TA +FA L T L A
Sbjct: 233 TSQTRTFNASVTSQLAGALQGKPAVIVDLKKTAKKSFAPGLYDLTELQRDA 283
>sp|Q8QMN3|KBTB2_CWPXB Kelch repeat and BTB domain-containing protein 2 OS=Cowpox virus
(strain Brighton Red) GN=KBTB2 PE=3 SV=1
Length = 557
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 192 VPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIES-----LWREFWRSQDNNNG 246
+P+ +++R + N+ ++ DAF + + F I + L+RE ++
Sbjct: 141 IPIVKYIKR---MLMSNIPTLITTDAFKKTVFEILFDIISTNDNVYLYREGYKVTI---L 194
Query: 247 DECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQN 283
+ E Y+++ +L C+ C+ +Q ++ L Y N
Sbjct: 195 LKWLEHNYITEEQLLCILSCIDIQNLDKKSRLLLYSN 231
>sp|Q8N3X6|LCORL_HUMAN Ligand-dependent nuclear receptor corepressor-like protein OS=Homo
sapiens GN=LCORL PE=2 SV=4
Length = 602
Score = 32.7 bits (73), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 112 EIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNG 171
++ L EDC PE+ T +D S EA D I +LD S +S E SQ +N
Sbjct: 68 DLSLFEDCEPEELTDWSMDEKCSFCNLQREAVSDCIPSLDSS--QSTPTEELSSQGQSNT 125
Query: 172 D--ECEEEKYL 180
D EC+ E YL
Sbjct: 126 DKIECQAENYL 136
>sp|P47637|Y397_MYCGE Uncharacterized protein MG397 OS=Mycoplasma genitalium (strain ATCC
33530 / G-37 / NCTC 10195) GN=MG397 PE=4 SV=1
Length = 566
Score = 32.7 bits (73), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 18/162 (11%)
Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHL----AQAARAVLQNSTQINQML 368
SWL A+ ++ IN+ V + F +++Y N L +A V QN T ++ ++
Sbjct: 296 SWLFQAV-SSKEKSINLVVENIDDFRNQIQQYEKKNELLKTTIKAIELVFQNETDVHDLI 354
Query: 369 TDLNR------VDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVV 422
+LN + +N+ Q+ Q + E F L Q +LE+ N L +++
Sbjct: 355 IELNENCDLITKNINNLNHQSLAQNQINY------EKLFYLMSQTNQALEKLKNSLTDLL 408
Query: 423 NAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAAS 464
N + F+ F F K+ F +I D L+ A
Sbjct: 409 NLAVNKFDDYRFFVYTLDDFRFKF-FQIENLISDQDLKVPAK 449
>sp|Q84W66|NFYB6_ARATH Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana
GN=NFYB6 PE=1 SV=2
Length = 234
Score = 32.7 bits (73), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 76 GSEGHTTAGQTNSNPSPQSGNHNFL-GDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRS 134
G G+ N+ PSP NFL +GS P+F + + + + E+CT+ + D F
Sbjct: 5 GFHGYRKLSVNNTTPSPPGLAANFLMAEGSMRPPEFNQPNKTSNGGEEECTVREQDRFMP 64
Query: 135 I 135
I
Sbjct: 65 I 65
>sp|Q6BGY8|INO80_DEBHA Putative DNA helicase INO80 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=INO80 PE=3 SV=2
Length = 1364
Score = 32.3 bits (72), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 8/115 (6%)
Query: 283 NLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQ---EMINIKVTAVGAFAQ 339
N+VE +IP +RP S+ S + K S ++N + Q E KV A+ Q
Sbjct: 83 NIVESIIPKPIRPTRSSIESDEEDVGKNYNSIISNDSEHISQRYLENFEDKVNAINKIDQ 142
Query: 340 MLRRYTSLNHLAQAAR---AVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDA 391
+L + ++ L Q +++NS +I + D RV ++ +A+ + D+
Sbjct: 143 VLIKGNNMRVLNQEEENLNILIRNSGEIAENYID--RVVTEDISSKANILNGKDS 195
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 207,179,069
Number of Sequences: 539616
Number of extensions: 8793270
Number of successful extensions: 25432
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 25092
Number of HSP's gapped (non-prelim): 256
length of query: 544
length of database: 191,569,459
effective HSP length: 122
effective length of query: 422
effective length of database: 125,736,307
effective search space: 53060721554
effective search space used: 53060721554
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)