Query psy7163
Match_columns 544
No_of_seqs 190 out of 238
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 19:45:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7163.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7163hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3712|consensus 100.0 7.9E-93 1.7E-97 774.2 24.6 412 22-507 257-675 (736)
2 KOG3712|consensus 100.0 6.8E-31 1.5E-35 288.6 19.4 340 1-384 264-611 (736)
3 PF02257 RFX_DNA_binding: RFX 98.5 1.3E-08 2.9E-13 87.0 -0.1 22 22-43 63-84 (85)
4 PF10266 Strumpellin: Heredita 45.1 3.3E+02 0.0072 33.8 13.7 165 280-487 589-763 (1081)
5 PF12243 CTK3: CTD kinase subu 42.8 1.9E+02 0.004 27.3 9.0 107 332-447 5-118 (139)
6 PF09452 Mvb12: ESCRT-I subuni 38.2 48 0.001 29.2 4.0 57 255-329 25-83 (91)
7 COG4755 Uncharacterized protei 31.1 3.2E+02 0.007 25.7 8.3 72 298-371 7-84 (151)
8 PF12331 DUF3636: Protein of u 28.7 4.6E+02 0.01 25.1 9.2 90 200-323 4-93 (149)
9 PF07159 DUF1394: Protein of u 26.8 8E+02 0.017 26.2 12.2 142 277-425 56-214 (303)
10 PF08336 P4Ha_N: Prolyl 4-Hydr 26.1 3.4E+02 0.0075 24.7 7.9 46 327-374 27-76 (134)
11 KOG0064|consensus 25.9 8.4E+02 0.018 28.5 12.0 27 301-330 150-176 (728)
12 PF07851 TMPIT: TMPIT-like pro 21.4 2.4E+02 0.0051 30.4 6.5 54 435-489 149-224 (330)
No 1
>KOG3712|consensus
Probab=100.00 E-value=7.9e-93 Score=774.20 Aligned_cols=412 Identities=49% Similarity=0.782 Sum_probs=366.6
Q ss_pred CcCCCCCCCCcccccccccCCCCCCCCCCCCC------CCCCCCCCcccccc-CCCCCCCCCCCCCccCCCCCCCCCCCC
Q psy7163 22 PLSDENGGNSKYHYYGIRVKPDSPLNNIPLSD------ENGSPRGKKYKLVK-TDSNSNQYGSEGHTTAGQTNSNPSPQS 94 (544)
Q Consensus 22 ~~rlgtrg~skyhYygiRiKp~S~~~r~~~~~------~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~ 94 (544)
+|||||||||||||||||+||+|+++++++++ ++|+++++| .+.+ +++.+...+......+++....-|.+
T Consensus 257 TRRLGtRGqSKYHYyGirvk~~ss~~sl~~d~~~~~~~~qP~~~~qr-~p~q~~~~~~ps~s~~~~~~S~~~~~~~q~~- 334 (736)
T KOG3712|consen 257 TRRLGTRGQSKYHYYGIRVKPSSSLSSLQEDQKYMAMRQQPMQQSQR-MPLQKPSSVTPSGSPQLVPASVEQTVNLQSQ- 334 (736)
T ss_pred hhhcccCCCCceeeeeeecCCCCcccccccccccccccCCccccccc-CccccCCcCCCCCCcccCccccchhhcHHHH-
Confidence 89999999999999999999999999998887 478888877 4544 33333311111111122223333444
Q ss_pred ccccccCCCCCCCCCCCccCcCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCCChh
Q psy7163 95 GNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC 174 (544)
Q Consensus 95 ~~~~~lg~~~~~~Pdfp~~~l~~~~lp~~~~~~~v~~~~~~y~~hc~~vld~v~~~~f~~~~~fW~~fw~~~~~~~~~~~ 174 (544)
+++++. +.+..+|+||++++.+ +|.+++..+++.|..+|++||+++++++.+++|+++|++|..||........+
T Consensus 335 ~~~q~~-~~~~~lP~~p~l~~~s--~p~s~~~~dl~~~~~~~~~h~~a~~~~~~~~~~~liE~~~~~~~k~~ls~~~~-- 409 (736)
T KOG3712|consen 335 QYQQSF-DVSHVLPEFPELDLLS--LPASLPAIDLKALGPAYREHCEAILDVVPNLQFDLIEKVWLKFWKLSLSEISD-- 409 (736)
T ss_pred hhcccc-cchhcCcccCCccccc--CcccCChhhcccccchhhhhhHHHHhHHHhcchhhHHHHHHHhhhhhhccccc--
Confidence 555777 8899999999998875 89999999999999999999999999999999999999999999965332111
Q ss_pred hhhhhhhhhhhhcccccchhhhHHhhchhhhhhhhHHhccCCchhhhhhhcchhhHHHHHHHHHhhccCCCCCcchhhhh
Q psy7163 175 EEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKY 254 (544)
Q Consensus 175 ~~~~~lp~~~L~~Lc~~~~v~~~v~~cD~~lyq~lv~vLiP~vl~~~~~t~~f~~ve~~lr~FW~~~~~~~~~~~~~e~~ 254 (544)
+. +++. .++.|..
T Consensus 410 ----------------------------------------------------~p-~~~~--------------~~~~~~~ 422 (736)
T KOG3712|consen 410 ----------------------------------------------------GP-ILSN--------------PSDLEAR 422 (736)
T ss_pred ----------------------------------------------------Cc-cccc--------------chhhhhc
Confidence 00 1112 2333456
Q ss_pred hhhhhhhhccCChhHHHHHHHhHHHHHHHHHHHhcccccccCChhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy7163 255 LSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAV 334 (544)
Q Consensus 255 lp~~kL~~L~~~~~V~~wI~~CD~ilYq~Lv~~Lip~vLq~VP~~ll~~IR~FAk~Le~wL~~Al~~lP~~lv~~Kl~~a 334 (544)
++..||..+|.++.|.+||+.||.+||++++++|+|+||+++|..+++.||+|||+|+.||.+++.++|..+++.|.++|
T Consensus 423 ~~~p~L~al~~~~~v~~~v~~~d~~LY~~i~~~liP~vL~~~p~~ltq~ir~fAksL~~~Ls~~~aslp~~~~~~K~~aa 502 (736)
T KOG3712|consen 423 LDKPKLLALCRSDSVVKWVISCDNILYQAIVEILIPDVLQPLPSSLTQLIRNFAKSLDPWLSNALASLPESLRQTKVEAA 502 (736)
T ss_pred CCccccccccCchhHHHHHhhhhHHHHHHHHHHhhhhhhccCChhHHHHHHhhhHHHHHHHHHHHhhccHHHHhhhHHHH
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHccChhhHHHHHHHhhccChhhHHhhhcccccCchHHHHHHHHHHHHhhcccccHHHH
Q psy7163 335 GAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEW 414 (544)
Q Consensus 335 ~~F~qlLrR~tsLnhlAqAAr~vL~n~~~i~qM~~Dw~rVDf~~I~eQa~~~~~C~~~vv~~l~~~fk~lL~~~~~le~~ 414 (544)
++|+++|||+|+|||+|||||+||+|++++++|+.||+|||+++|++|+.|+|.|++.+|++++.+||.+|+.++.+|.|
T Consensus 503 ~~f~q~L~r~tslnhla~asr~vl~n~~~~~qml~D~~rvd~~~vq~q~~wv~~c~~~~V~~~~~~fK~~lq~~s~ie~~ 582 (736)
T KOG3712|consen 503 SYFSQILRRYTSLNHLAQASRGVLQNPEQTQQMLSDWRRVDKANVQEQASWVCRCDEVMVQRLEQDFKHLLQQQSDIEVW 582 (736)
T ss_pred HHHHHHHhhhcccccccccchhhcCCHHHHHHHHHHHhhcchhhhhcchhhhhccccHHHhhhhhhhhHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHhHhhhCCC
Q psy7163 415 ANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGET 494 (544)
Q Consensus 415 a~wLd~lv~~vl~p~~~~~~f~~~ar~FlL~Ws~~sS~ViRdLTLrsA~SFGSfhLirll~DEYm~~lvE~~va~~~~~~ 494 (544)
|+|||++++|+++++.++++|++.+|+|+|+||||+|+|||||||+||+||||||+||||+||||+|++|+|+++++|++
T Consensus 583 a~wld~vv~r~~~~~~~~p~~~~~~~qfLl~ws~~sS~virdltl~sa~sFgsf~lirl~~DeyM~yl~e~~~~~~~~~~ 662 (736)
T KOG3712|consen 583 AEWLDSVVDRMLKKYAGSPSLPKVARQFLLKWSFYSSMVIRDLTLRSAESFGSFHLIRLLADEYMYYLIESGIAQAGGNE 662 (736)
T ss_pred HHHHHHHHHHHhhhhccCCCcccHHHHHHHHhhhcccchhHhhhhhccccccchhhhhhhhhhhhhhhhccchhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceecccCCCCCC
Q psy7163 495 PIAVIGSKESNPV 507 (544)
Q Consensus 495 ~~~~~~~~~~~~~ 507 (544)
||+|||+|.+++.
T Consensus 663 ~i~~~~~~~~~~~ 675 (736)
T KOG3712|consen 663 PIAVMGAFASLKS 675 (736)
T ss_pred HHHHHhhhccccc
Confidence 9999999999976
No 2
>KOG3712|consensus
Probab=99.97 E-value=6.8e-31 Score=288.59 Aligned_cols=340 Identities=20% Similarity=0.235 Sum_probs=246.3
Q ss_pred CCCcceeeeeEeCCCCCCCCCCcCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCC
Q psy7163 1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGH 80 (544)
Q Consensus 1 gnskyhyyg~r~kp~sPlnr~~~rlgtrg~skyhYygiRiKp~S~~~r~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 80 (544)
|||||||||||+||+||+++++ ++..||++|.+|+++.+|.+ .+ +..+.+++.+......+...
T Consensus 264 GqSKYHYyGirvk~~ss~~sl~--------~d~~~~~~~~qP~~~~qr~p------~q--~~~~~~ps~s~~~~~~S~~~ 327 (736)
T KOG3712|consen 264 GQSKYHYYGIRVKPSSSLSSLQ--------EDQKYMAMRQQPMQQSQRMP------LQ--KPSSVTPSGSPQLVPASVEQ 327 (736)
T ss_pred CCCceeeeeeecCCCCcccccc--------cccccccccCCcccccccCc------cc--cCCcCCCCCCcccCccccch
Confidence 9999999999999999999988 88889999999999999933 22 22233443333333334444
Q ss_pred ccCCCCCCCCCCCCccccccCCCCCCCCCCCccCcCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHh
Q psy7163 81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWR 160 (544)
Q Consensus 81 ~~~~~~~~~~q~~~~~~~~lg~~~~~~Pdfp~~~l~~~~lp~~~~~~~v~~~~~~y~~hc~~vld~v~~~~f~~~~~fW~ 160 (544)
+...|+++.+|..+.++..+ .++-+|.-+ |+...-+.++..-- ..+.+||......+....+++.++.|..||+
T Consensus 328 ~~~~q~~~~~q~~~~~~~lP---~~p~l~~~s--~p~s~~~~dl~~~~-~~~~~h~~a~~~~~~~~~~~liE~~~~~~~k 401 (736)
T KOG3712|consen 328 TVNLQSQQYQQSFDVSHVLP---EFPELDLLS--LPASLPAIDLKALG-PAYREHCEAILDVVPNLQFDLIEKVWLKFWK 401 (736)
T ss_pred hhcHHHHhhcccccchhcCc---ccCCccccc--CcccCChhhccccc-chhhhhhHHHHhHHHhcchhhHHHHHHHhhh
Confidence 55556666667777888888 777777655 45544455554222 3488999999999999999999999999999
Q ss_pred hhccCCCCC--CCChhhhhhhhhhhhhhcccccchhhhHHhhchhhhhhhhHHhccCCchhhhhhhcchhhHHHHHHHHH
Q psy7163 161 EFWRSQDNN--NGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFW 238 (544)
Q Consensus 161 ~fw~~~~~~--~~~~~~~~~~lp~~~L~~Lc~~~~v~~~v~~cD~~lyq~lv~vLiP~vl~~~~~t~~f~~ve~~lr~FW 238 (544)
-+-....+. .+..++.+.++++++|.+||+++.|++||+.||++|||++|++|||+||+..+.+ +.-.+|+|.
T Consensus 402 ~~ls~~~~~p~~~~~~~~~~~~~~p~L~al~~~~~v~~~v~~~d~~LY~~i~~~liP~vL~~~p~~-----ltq~ir~fA 476 (736)
T KOG3712|consen 402 LSLSEISDGPILSNPSDLEARLDKPKLLALCRSDSVVKWVISCDNILYQAIVEILIPDVLQPLPSS-----LTQLIRNFA 476 (736)
T ss_pred hhhcccccCcccccchhhhhcCCccccccccCchhHHHHHhhhhHHHHHHHHHHhhhhhhccCChh-----HHHHHHhhh
Confidence 653322211 2445667779999999999999999999999999999999999999999988876 556899999
Q ss_pred hhccCCCCCcchhhhhhhhhhhhhccCChhHHHHHHHhHHHHHHH--HHHHhcccccccCChhHHHHHHHHHHHHHHHHH
Q psy7163 239 RSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQN--LVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLT 316 (544)
Q Consensus 239 ~~~~~~~~~~~~~e~~lp~~kL~~L~~~~~V~~wI~~CD~ilYq~--Lv~~Lip~vLq~VP~~ll~~IR~FAk~Le~wL~ 316 (544)
+++++ .|.+.+.+.+...|...|+.+.|=. +-+...=+.+......+++.-...-+-+.+|.+
T Consensus 477 ksL~~---------------~Ls~~~aslp~~~~~~K~~aa~~f~q~L~r~tslnhla~asr~vl~n~~~~~qml~D~~r 541 (736)
T KOG3712|consen 477 KSLDP---------------WLSNALASLPESLRQTKVEAASYFSQILRRYTSLNHLAQASRGVLQNPEQTQQMLSDWRR 541 (736)
T ss_pred HHHHH---------------HHHHHHhhccHHHHhhhHHHHHHHHHHHhhhcccccccccchhhcCCHHHHHHHHHHHhh
Confidence 99974 3455666788999999999987633 222333333556777888888888888999988
Q ss_pred --HH-HhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccChhhHHHHHHHhh-ccChhhHHhhhc
Q psy7163 317 --NA-MQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN-RVDFHNVQEQAS 384 (544)
Q Consensus 317 --~A-l~~lP~~lv~~Kl~~a~~F~qlLrR~tsLnhlAqAAr~vL~n~~~i~qM~~Dw~-rVDf~~I~eQa~ 384 (544)
.+ .+..-..+.+.+...+..|-+..+..+..-..-......| ...+.+|+.+|. +..+.++.+|-.
T Consensus 542 vd~~~vq~q~~wv~~c~~~~V~~~~~~fK~~lq~~s~ie~~a~wl--d~vv~r~~~~~~~~p~~~~~~~qfL 611 (736)
T KOG3712|consen 542 VDKANVQEQASWVCRCDEVMVQRLEQDFKHLLQQQSDIEVWAEWL--DSVVDRMLKKYAGSPSLPKVARQFL 611 (736)
T ss_pred cchhhhhcchhhhhccccHHHhhhhhhhhHHHHhhhHHHHHHHHH--HHHHHHHhhhhccCCCcccHHHHHH
Confidence 33 3334445555577777776666655554332222222333 356789999996 788888877644
No 3
>PF02257 RFX_DNA_binding: RFX DNA-binding domain; InterPro: IPR003150 RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DP7_P 2KW3_A.
Probab=98.55 E-value=1.3e-08 Score=87.01 Aligned_cols=22 Identities=55% Similarity=0.890 Sum_probs=16.7
Q ss_pred CcCCCCCCCCcccccccccCCC
Q psy7163 22 PLSDENGGNSKYHYYGIRVKPD 43 (544)
Q Consensus 22 ~~rlgtrg~skyhYygiRiKp~ 43 (544)
+|||||||+|||||+|||+|++
T Consensus 63 ~RRLG~RG~SkYhY~Gir~k~~ 84 (85)
T PF02257_consen 63 TRRLGTRGQSKYHYCGIRLKPD 84 (85)
T ss_dssp EEEESSTT--EEEEEEEEE---
T ss_pred ccccccCCCcceEEEeEEecCC
Confidence 7999999999999999999986
No 4
>PF10266 Strumpellin: Hereditary spastic paraplegia protein strumpellin; InterPro: IPR019393 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. Strumpellin contains one known domain called a spectrin repeat that consists of three alpha-helices of a characteristic length wrapped in a left-handed coiled coil. The spectrin proteins have multiple copies of this repeat, which can then form multimers in the cell. Spectrin associates with the cell membrane via spectrin repeats in the ankyrin protein. The spectrin repeat is a structural platform for cytoskeletal protein assemblies. Two closely situated point mutations in human strumpellin lead to the condition of hereditary spastic paraplegia.
Probab=45.10 E-value=3.3e+02 Score=33.85 Aligned_cols=165 Identities=22% Similarity=0.339 Sum_probs=93.7
Q ss_pred HHHHHHHHhcccccccCChhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Q psy7163 280 FYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQ 359 (544)
Q Consensus 280 lYq~Lv~~Lip~vLq~VP~~ll~~IR~FAk~Le~wL~~Al~~lP~~lv~~Kl~~a~~F~qlLrR~tsLnhlAqAAr~vL~ 359 (544)
-|-.-..-.+..|||-||.++..-+..+.+ -+.+.+..+|..+-+.|+ +.|||+=.|+ .|.+++++.+ .
T Consensus 589 yYS~eLv~~vR~VLqiIP~smF~il~~ii~----l~t~~~ke~P~rl~K~~l---k~~Aql~~R~-~lA~~T~~is---~ 657 (1081)
T PF10266_consen 589 YYSSELVKYVRKVLQIIPESMFEILAQIID----LQTNVLKELPTRLEKDEL---KDYAQLDERY-QLAKLTHSIS---V 657 (1081)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HhhcccccCCCccCHHHH---HHHHhhHHHH-HHHHHHHHHH---H
Confidence 455555555556666666666666655554 233334446666665554 4566665554 3334444443 2
Q ss_pred ChhhHHHHHHHhh---ccChhhHHhhhcccccCchHHHHHHHHHHHHhhc----ccccHHHHHHHHHHHHHhhcCCCCCC
Q psy7163 360 NSTQINQMLTDLN---RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQ----QQNSLEEWANWLKNVVNAVLKPFEGK 432 (544)
Q Consensus 360 n~~~i~qM~~Dw~---rVDf~~I~eQa~~~~~C~~~vv~~l~~~fk~lL~----~~~~le~~a~wLd~lv~~vl~p~~~~ 432 (544)
=.+-+-.|..-+. +||+..+.|.-. ..++|.++...+...|. ..++...+.+-|..+-.++
T Consensus 658 ft~GIl~M~~T~vGvi~vdP~qLLedGI-----RkeLv~~i~~~l~~~L~F~~~~~~~~~~l~~~L~~L~~~~------- 725 (1081)
T PF10266_consen 658 FTEGILAMKTTLVGVIEVDPKQLLEDGI-----RKELVKQIAKALHEGLIFNEKPKPKASELQEKLQKLAARM------- 725 (1081)
T ss_pred HHHHHHHhhhhhceeEecCHHHHHHHHH-----HHHHHHHHHHHHHhhccCCccccCCHHHHHHHHHHHHHHH-------
Confidence 3567788998885 679988876433 23455555555554443 3556667777777766653
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHH---HHHHHHHHh
Q psy7163 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEY---MFYLIEHQV 487 (544)
Q Consensus 433 ~~f~~~ar~FlL~Ws~~sS~ViRdLTLrsA~SFGSfhLirll~DEY---m~~lvE~~v 487 (544)
-.-.|+|- -|-| +-.-|-+|+|-+|+ +.|.||..-
T Consensus 726 ---~g~R~SFE---------YIQD--------YvnI~GLrIW~EE~sRIInynVEqEC 763 (1081)
T PF10266_consen 726 ---DGFRRSFE---------YIQD--------YVNIHGLRIWQEEFSRIINYNVEQEC 763 (1081)
T ss_pred ---HHHHHHHH---------HHHH--------HhccchhHHHHHHHHHHHHHHHHHHH
Confidence 22233441 2222 23446688888776 567777654
No 5
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=42.80 E-value=1.9e+02 Score=27.34 Aligned_cols=107 Identities=22% Similarity=0.297 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHH-hHHHHHHHHHHHccChhhHHHHHHHhhccChhhHHhhhcc-cccCchHHHHHHHHHHHHhhcccc
Q psy7163 332 TAVGAFAQMLRRYT-SLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASW-VCQCDASLVQQLESDFKLTLQQQN 409 (544)
Q Consensus 332 ~~a~~F~qlLrR~t-sLnhlAqAAr~vL~n~~~i~qM~~Dw~rVDf~~I~eQa~~-~~~C~~~vv~~l~~~fk~lL~~~~ 409 (544)
++..+|.++|+|++ +...+.+||+=.|.+.+ |-.|+- +-|.|+..- ..+..-.+.+-++.=...-...+.
T Consensus 5 E~r~~F~~~L~~L~aS~qSi~kaa~fAlk~~~----~~edL~----~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~ 76 (139)
T PF12243_consen 5 EVRMQFTQLLRRLNASQQSIQKAAQFALKNRD----MEEDLW----SCILEQLEKENLNTRINIFYFIDSLCESSQKSKK 76 (139)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHHccc----cHHHHH----HHHHHHHhccchhhHHHHHHHHHHHHHHHHhccc
Confidence 46778999999998 56677778887887743 444442 223332111 123333444444431122222233
Q ss_pred cHHHHHHHHHHHHHhh---cCCCCCC--CchhhHHHHHHHHHH
Q psy7163 410 SLEEWANWLKNVVNAV---LKPFEGK--PNFTKAARQFLLKWS 447 (544)
Q Consensus 410 ~le~~a~wLd~lv~~v---l~p~~~~--~~f~~~ar~FlL~Ws 447 (544)
.-..|+..+.+-+-++ +.|..+. .+. +.++.+|-.|+
T Consensus 77 ~~~~Yv~~l~~dL~~Iv~~V~P~~~~g~~N~-~~~~kvL~~~~ 118 (139)
T PF12243_consen 77 YNYPYVSMLQRDLPRIVDAVAPPDNSGAANL-KSVRKVLKNWS 118 (139)
T ss_pred ccchhHHHHHHHHHHHHHHhCCCCCccchHH-HHHHHHHHHHH
Confidence 4456777777644443 2344333 232 36777788886
No 6
>PF09452 Mvb12: ESCRT-I subunit Mvb12; InterPro: IPR019014 The endosomal sorting complex required for transport (ESCRT) complexes play a critical role in receptor down-regulation and retroviral budding. A new component of the ESCRT-I complex was identified [], multivesicular body sorting factor of 12 kDa (Mvb12), which binds to the coiled-coil domain of the ESCRT-I subunit vacuolar protein sorting 23 (Vps23) []. ; PDB: 2P22_D.
Probab=38.18 E-value=48 Score=29.18 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=26.7
Q ss_pred hhhhhhhhccCC-hhHHHHHHHhHHHHHHHHHHHhcccccccCChhHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHH
Q psy7163 255 LSKSKLFCLSKC-VPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNA-MQGCPQEMINI 329 (544)
Q Consensus 255 lp~~kL~~L~~~-~~V~~wI~~CD~ilYq~Lv~~Lip~vLq~VP~~ll~~IR~FAk~Le~wL~~A-l~~lP~~lv~~ 329 (544)
||.-+|-.+-.. +-+.+|+.+||.|+ ...+.-+.=.+.++.|-.+- |.+-|..|++.
T Consensus 25 ~P~~~l~~~~~t~em~~~W~~ECd~i~------------------~~~~~hd~~~k~Fd~WY~e~yLs~KPpGm~~~ 83 (91)
T PF09452_consen 25 VPEIKLPPLQPTKEMFQPWYEECDQIV------------------ESCEQHDKSSKEFDQWYKEKYLSKKPPGMVES 83 (91)
T ss_dssp ---------HHHHHHHHHHHHHHHHHH------------------HHHHHHHTHHHHHHHHHHHHS-----------
T ss_pred CccccCCCCCChHHHHHHHHHHHHHHH------------------HHHHHHHHhcchHHHHHHHHHhccCCCCcccC
Confidence 444444433222 34889999999986 23555667788899998764 55678877765
No 7
>COG4755 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.07 E-value=3.2e+02 Score=25.75 Aligned_cols=72 Identities=11% Similarity=0.259 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHccChhhHHHHHHHh
Q psy7163 298 GSLTSSIRNFAKGVESWLTNA---MQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAA---RAVLQNSTQINQMLTDL 371 (544)
Q Consensus 298 ~~ll~~IR~FAk~Le~wL~~A---l~~lP~~lv~~Kl~~a~~F~qlLrR~tsLnhlAqAA---r~vL~n~~~i~qM~~Dw 371 (544)
.+++..+..|-.+|+.|+.-- +.++-. ...|++.+.+.--++.-.+.++|++.+. ..+|+||-....|=.|.
T Consensus 7 ~a~~~~~~sf~~~Le~WvklQk~~l~~lk~--~~~~~k~~DRLdLi~~~r~af~hm~rtLKaFd~WLqdP~v~s~mPrem 84 (151)
T COG4755 7 EAVLEYLESFMERLEQWVKLQKRQLKELKS--HGEHMKVADRLDLIYSARAAFGHMARTLKAFDSWLQDPVVTSVMPREM 84 (151)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhCcHHH
Confidence 456677888999999997631 112211 3455666677777777778888887654 46788887666665554
No 8
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=28.71 E-value=4.6e+02 Score=25.14 Aligned_cols=90 Identities=24% Similarity=0.361 Sum_probs=54.0
Q ss_pred hchhhhhhhhHHhccCCchhhhhhhcchhhHHHHHHHHHhhccCCCCCcchhhhhhhhhhhhhccCChhHHHHHHHhHHH
Q psy7163 200 RVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFL 279 (544)
Q Consensus 200 ~cD~~lyq~lv~vLiP~vl~~~~~t~~f~~ve~~lr~FW~~~~~~~~~~~~~e~~lp~~kL~~L~~~~~V~~wI~~CD~i 279 (544)
.|=.+||....-++. .++.+++|||.++.+- -|.-|-...++.+|+ .
T Consensus 4 ~~L~LLyl~A~~c~~---------------~~~~~~~FWr~m~~dF-------------vL~mLs~~Qp~~Di~-----~ 50 (149)
T PF12331_consen 4 ECLSLLYLAALGCLT---------------DDSAQTRFWRTMRYDF-------------VLMMLSPKQPLDDII-----L 50 (149)
T ss_pred HHHHHHHHHHHHhcC---------------ChHHHHHHHHhCcHHH-------------HHHHhCccCcHHHHH-----H
Confidence 344678988888875 3467899999998541 222333446777776 2
Q ss_pred HHHHHHHHhcccccccCChhHHHHHHHHHHHHHHHHHHHHhcCC
Q psy7163 280 FYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCP 323 (544)
Q Consensus 280 lYq~Lv~~Lip~vLq~VP~~ll~~IR~FAk~Le~wL~~Al~~lP 323 (544)
|-+-|.--..|+.+-||++.= +.=++-++...+.+.+-+...|
T Consensus 51 mL~lL~TS~lp~S~GpI~~~~-~~q~~~e~~iIdrvt~~L~E~P 93 (149)
T PF12331_consen 51 MLNLLSTSVLPDSFGPITDDE-SDQKNVENYIIDRVTNLLSEPP 93 (149)
T ss_pred HHHHHHhccCCCCcCCCCCCc-chhhhHHHHHHHHHHHHccCCC
Confidence 223333334455566887752 2223444466666666666777
No 9
>PF07159 DUF1394: Protein of unknown function (DUF1394); InterPro: IPR009828 This family consists of several hypothetical eukaryotic proteins of around 320 residues in length. The function of this family is unknown.
Probab=26.81 E-value=8e+02 Score=26.16 Aligned_cols=142 Identities=15% Similarity=0.212 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhcccccccCChhHHHHHHHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy7163 277 DFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQG------CPQEMINIKVTAVGAFAQMLRRYTSLNHL 350 (544)
Q Consensus 277 D~ilYq~Lv~~Lip~vLq~VP~~ll~~IR~FAk~Le~wL~~Al~~------lP~~lv~~Kl~~a~~F~qlLrR~tsLnhl 350 (544)
|.-+|....++|.|.| .-+..+=.|+.+++.-+-+-+.. =|...+..+-..++.|+.+|.=.+++-.+
T Consensus 56 ~ee~qe~aw~al~P~V------~kLk~Fy~Fs~~le~~~~~ll~~L~~~~~~~~~~l~~~qAL~kq~a~iL~f~l~fD~L 129 (303)
T PF07159_consen 56 DEELQEKAWEALEPLV------KKLKEFYEFSQELEKVFPKLLKELCSGPLKPKEHLEQKQALAKQFAEILDFVLKFDEL 129 (303)
T ss_pred hHHHHHHHHHHHhhHH------HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhHHhHHHHHHHHHHHHHHhhhhhh
Confidence 4457888888888876 33555556788888876665532 25577778888999999999877777655
Q ss_pred HHHHHHHccChhhHHHHHHHhhcc----Chh-----hHHhhhcccccCchHHHHHHHHHHHHhhcc-cc-cHHHHHHHHH
Q psy7163 351 AQAARAVLQNSTQINQMLTDLNRV----DFH-----NVQEQASWVCQCDASLVQQLESDFKLTLQQ-QN-SLEEWANWLK 419 (544)
Q Consensus 351 AqAAr~vL~n~~~i~qM~~Dw~rV----Df~-----~I~eQa~~~~~C~~~vv~~l~~~fk~lL~~-~~-~le~~a~wLd 419 (544)
--.-.++-+|-+-...-.+= .++ |.+ ++....++..-....+...|-........+ .. ++|...+||.
T Consensus 130 K~~npaIqNDFSyYRRa~sr-~k~~~~~~~~~~v~~elaN~mSlF~A~~tPmlk~L~~at~~~v~~~~~l~i~n~~d~L~ 208 (303)
T PF07159_consen 130 KMMNPAIQNDFSYYRRALSR-MKMNNMQEEENEVSDELANRMSLFYAEATPMLKTLSEATTKFVSENKDLPIENTTDVLS 208 (303)
T ss_pred hccChhhhccHHHHHHHHHH-HhhccccccchhhhHHHhhccceeeeeCCcHHHHHHHHHHHHHHcCccCCcccHHHHHH
Confidence 32222222222211111110 011 111 112223343333334444443333333333 22 5888899998
Q ss_pred HHHHhh
Q psy7163 420 NVVNAV 425 (544)
Q Consensus 420 ~lv~~v 425 (544)
.++..|
T Consensus 209 t~a~vC 214 (303)
T PF07159_consen 209 TMANVC 214 (303)
T ss_pred HHHHHH
Confidence 877765
No 10
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=26.10 E-value=3.4e+02 Score=24.70 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCh----hhHHHHHHHhhcc
Q psy7163 327 INIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNS----TQINQMLTDLNRV 374 (544)
Q Consensus 327 v~~Kl~~a~~F~qlLrR~tsLnhlAqAAr~vL~n~----~~i~qM~~Dw~rV 374 (544)
.+.|+...+.|...+++...-..- --...+.|| .-+..|..||.++
T Consensus 27 ~~~kl~~l~~~~~~~~~~~~~~~~--d~e~yl~nPlnaF~LIrRl~~dW~~~ 76 (134)
T PF08336_consen 27 LQEKLDTLKRFLDEMKREHEKAKS--DPEEYLSNPLNAFSLIRRLHQDWPKW 76 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc--chhhhhhcHHHHHHHHHHHHHhhhhH
Confidence 567888889999988887652221 122344554 5678999999876
No 11
>KOG0064|consensus
Probab=25.85 E-value=8.4e+02 Score=28.54 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy7163 301 TSSIRNFAKGVESWLTNAMQGCPQEMINIK 330 (544)
Q Consensus 301 l~~IR~FAk~Le~wL~~Al~~lP~~lv~~K 330 (544)
-...|+|...|-.|+- ..+|..+++.-
T Consensus 150 rk~~r~F~~~LlkW~l---iaiPAtFvNS~ 176 (728)
T KOG0064|consen 150 RKRGRQFLWDLLKWFL---IAIPASFVNSA 176 (728)
T ss_pred HhhHHHHHHHHHHHHh---hhccHHHHHHH
Confidence 4678999999999986 56798888653
No 12
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=21.41 E-value=2.4e+02 Score=30.43 Aligned_cols=54 Identities=17% Similarity=0.463 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcC-CCCCchHHHHHHH---------------------HHHHHHHHHHHHHhHh
Q psy7163 435 FTKAARQFLLKWSFYSSMVIRDLTLR-SAASFGSFHLIRL---------------------LYDEYMFYLIEHQVAL 489 (544)
Q Consensus 435 f~~~ar~FlL~Ws~~sS~ViRdLTLr-sA~SFGSfhLirl---------------------l~DEYm~~lvE~~va~ 489 (544)
++...-+|+|+| ||.|..|||=-|+ ++..-=.||+.+= |..-+|.|.+=.++.+
T Consensus 149 ~~d~~~~f~lvw-yY~tLtiRE~IL~~NGS~Ik~WW~~HHy~s~~~s~v~Ltwp~~~~~~~fr~~fl~f~~~~~~vq 224 (330)
T PF07851_consen 149 VLDQLFNFLLVW-YYCTLTIRESILIVNGSRIKGWWVFHHYISTFLSGVMLTWPDGEAYQKFRPQFLLFSLYQSVVQ 224 (330)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999 8999999998888 7888889998764 3455666666666654
Done!