Query psy7163
Match_columns 544
No_of_seqs 190 out of 238
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 19:46:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7163.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7163hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dp7_P MHC class II transcript 98.6 8.7E-09 3E-13 85.2 0.4 21 22-42 56-76 (76)
2 2vxg_A LD41624, GE-1, CG6181-P 23.2 3.4E+02 0.012 24.2 8.6 81 267-347 18-111 (139)
3 2khf_A PLNJ; anti-microbial, b 21.4 28 0.00096 22.2 0.7 10 233-242 2-11 (26)
4 1upk_A MO25 protein; transfera 13.8 6.2E+02 0.021 25.9 9.0 99 267-377 41-140 (341)
5 2p22_D Hypothetical 12.0 kDa p 13.3 85 0.0029 25.8 1.9 33 267-317 43-75 (79)
6 3swh_A MUNC13-1, protein UNC-1 13.3 1E+03 0.034 24.1 14.9 80 267-349 13-103 (341)
7 2pa2_A 60S ribosomal protein L 12.7 79 0.0027 29.0 1.7 48 2-50 51-108 (151)
8 3mhs_B Protein SUS1; multi-pro 10.4 89 0.0031 26.4 1.2 36 273-308 50-89 (96)
9 4dhx_B Enhancer of yellow 2 tr 9.8 1.7E+02 0.006 24.8 2.8 32 277-308 60-95 (101)
10 1iv8_A Maltooligosyl trehalose 8.6 7.5E+02 0.026 27.8 8.1 69 277-356 484-574 (720)
No 1
>1dp7_P MHC class II transcription factor HRFX1; winged helix, protein- DNA conovel mode of DNA recognition, transcription/DNA complex; HET: DNA BRU; 1.50A {Synthetic} SCOP: a.4.5.20
Probab=98.56 E-value=8.7e-09 Score=85.23 Aligned_cols=21 Identities=52% Similarity=0.925 Sum_probs=20.5
Q ss_pred CcCCCCCCCCcccccccccCC
Q psy7163 22 PLSDENGGNSKYHYYGIRVKP 42 (544)
Q Consensus 22 ~~rlgtrg~skyhYygiRiKp 42 (544)
+|||||||+|||||+|||+||
T Consensus 56 trRLg~rG~skyhy~Girlk~ 76 (76)
T 1dp7_P 56 TRRLGTRGNSKYHYYGLRIKA 76 (76)
T ss_dssp EEEESSTTCCEEEEEEEEECC
T ss_pred eeeccccCCccEEEEeeEeCC
Confidence 899999999999999999997
No 2
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=23.16 E-value=3.4e+02 Score=24.20 Aligned_cols=81 Identities=9% Similarity=0.071 Sum_probs=54.9
Q ss_pred hhHHHHHHHhHHHHHHHHHHHhcccc-c----ccCChhH-HHHHHHHHHHHH-------HHHHHHHhcCCHHHHHHHHHH
Q psy7163 267 VPVQAFVRRVDFLFYQNLVEVLIPDV-L----RPIPGSL-TSSIRNFAKGVE-------SWLTNAMQGCPQEMINIKVTA 333 (544)
Q Consensus 267 ~~V~~wI~~CD~ilYq~Lv~~Lip~v-L----q~VP~~l-l~~IR~FAk~Le-------~wL~~Al~~lP~~lv~~Kl~~ 333 (544)
++...|+...|.-+..-++.-+-|.. + .++|+.+ +.-+..++..|. .||+.++..+-..--..+.-+
T Consensus 18 eAf~~aL~ssd~~lv~~lc~~~dp~~~~~~~~~~Lsq~vLLSLiqqls~dL~~~~~~Kl~WLe~vl~aid~~dp~i~~~~ 97 (139)
T 2vxg_A 18 KAFHQALLANDLGLVEFTLRHTDSNQAFAPEGCRLEQKVLLSLIQQISADMTNHNELKQRYLNEALLAINMADPITREHA 97 (139)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCHHHHTC----CCCHHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHCCTTSHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHcCCHHHhcCCCCCCccHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCchHHHHH
Confidence 66777888888888888888888885 7 6777776 556667776654 699999886533333334445
Q ss_pred HHHHHHHHHHHHhH
Q psy7163 334 VGAFAQMLRRYTSL 347 (544)
Q Consensus 334 a~~F~qlLrR~tsL 347 (544)
-+.+.++..|+..+
T Consensus 98 p~Il~~l~~~L~~~ 111 (139)
T 2vxg_A 98 PKVLTELYRNCQQF 111 (139)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55566666666544
No 3
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=21.41 E-value=28 Score=22.24 Aligned_cols=10 Identities=40% Similarity=1.262 Sum_probs=8.3
Q ss_pred HHHHHHhhcc
Q psy7163 233 LWREFWRSQD 242 (544)
Q Consensus 233 ~lr~FW~~~~ 242 (544)
.|.+||.++.
T Consensus 2 awknfwsslr 11 (26)
T 2khf_A 2 AWKNFWSSLR 11 (26)
T ss_dssp CHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 3889999986
No 4
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=13.79 E-value=6.2e+02 Score=25.95 Aligned_cols=99 Identities=13% Similarity=0.146 Sum_probs=57.0
Q ss_pred hhHHHHHHHhHHHHHHHHHHHhcccccccCChhHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy7163 267 VPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRN-FAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYT 345 (544)
Q Consensus 267 ~~V~~wI~~CD~ilYq~Lv~~Lip~vLq~VP~~ll~~IR~-FAk~Le~wL~~Al~~lP~~lv~~Kl~~a~~F~qlLrR~t 345 (544)
++|...+.+.-.++|..-- -.|.|+.+.+-... +..++-.-|...+..+|- ++|-.++..|+.+|||..
T Consensus 41 ee~sK~l~~mK~iL~G~~e-------~ep~~e~~~qL~~ei~~~dll~~Li~~l~~L~f---E~RKd~~~if~~llr~~~ 110 (341)
T 1upk_A 41 EEVSKNLVAMKEILYGTNE-------KEPQTEAVAQLAQELYNSGLLSTLVADLQLIDF---EGKKDVAQIFNNILRRQI 110 (341)
T ss_dssp HHHHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHSHHHHHHHTGGGSCH---HHHHHHHHHHHHHHTCCB
T ss_pred HHHHHHHHHHHHHhcCCCC-------CCCCHHHHHHHHHHHHHhCHHHHHHHhcccCCc---hhhccHHHHHHHHHhccc
Confidence 5566666666666664321 12455544333332 345555556666666664 467789999999999985
Q ss_pred hHHHHHHHHHHHccChhhHHHHHHHhhccChh
Q psy7163 346 SLNHLAQAARAVLQNSTQINQMLTDLNRVDFH 377 (544)
Q Consensus 346 sLnhlAqAAr~vL~n~~~i~qM~~Dw~rVDf~ 377 (544)
.-- --+..-+.++++.+..++.-++.-|..
T Consensus 111 ~~~--~p~v~Yl~~~peil~~L~~gYe~~diA 140 (341)
T 1upk_A 111 GTR--TPTVEYICTQQNILFMLLKGYESPEIA 140 (341)
T ss_dssp TTB--CHHHHHHHTCTHHHHHHHHGGGSTTTH
T ss_pred CCC--CchhHHHHcCHHHHHHHHHhhccchhH
Confidence 311 112344556788888888887766653
No 5
>2p22_D Hypothetical 12.0 kDa protein in ADE3-Ser2 intergenic region; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=13.34 E-value=85 Score=25.77 Aligned_cols=33 Identities=9% Similarity=0.155 Sum_probs=22.0
Q ss_pred hhHHHHHHHhHHHHHHHHHHHhcccccccCChhHHHHHHHHHHHHHHHHHH
Q psy7163 267 VPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTN 317 (544)
Q Consensus 267 ~~V~~wI~~CD~ilYq~Lv~~Lip~vLq~VP~~ll~~IR~FAk~Le~wL~~ 317 (544)
+-+.+|+++||.|+ .+.+.=+.-.++++.|=.+
T Consensus 43 ~~~~pWy~EC~~I~------------------~~~~~hd~~~~~Fd~WY~e 75 (79)
T 2p22_D 43 DLLCPWYEECDNIT------------------KVCQLHDSSNKKFDQWYKE 75 (79)
T ss_dssp HHHHHHHHHHHHHH------------------HHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------------------HHHHHHHHhcCcHHHHHHH
Confidence 44568999999986 2344445566777777554
No 6
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=13.31 E-value=1e+03 Score=24.09 Aligned_cols=80 Identities=14% Similarity=0.113 Sum_probs=62.9
Q ss_pred hhHHHHHHHhHHHHHHHHHHHhcccccccC---------ChhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHH
Q psy7163 267 VPVQAFVRRVDFLFYQNLVEVLIPDVLRPI---------PGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKV--TAVG 335 (544)
Q Consensus 267 ~~V~~wI~~CD~ilYq~Lv~~Lip~vLq~V---------P~~ll~~IR~FAk~Le~wL~~Al~~lP~~lv~~Kl--~~a~ 335 (544)
|.|..|+..++..+-+.+-+.+-.+-+.++ +.++.+.++.|....+-|.. -+-|+....++. +.++
T Consensus 13 ~~V~~Wl~~~~~k~~~~v~~Ai~~Dk~~~~~~~~~~~~hSsSvvDif~~~~Q~~~~~~~---L~WpD~~~~~~f~t~l~~ 89 (341)
T 3swh_A 13 PFVIQWLDENEEVSRDFLHGALERDKKDGFQQTSEHALFSCSVVDVFSQLNQSFEIIKK---LECPDPQIVGHYMRRFAK 89 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSSSCCSCTHHHHHHHHHHHHHHHHHH---SCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccCccccchHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHH
Confidence 899999999999998888888776666655 78899999999887776655 467777666555 5778
Q ss_pred HHHHHHHHHHhHHH
Q psy7163 336 AFAQMLRRYTSLNH 349 (544)
Q Consensus 336 ~F~qlLrR~tsLnh 349 (544)
.|++.+-.|..+.+
T Consensus 90 ~i~~~~~~Y~~~l~ 103 (341)
T 3swh_A 90 TISNVLLQYADIVS 103 (341)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877653
No 7
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1
Probab=12.73 E-value=79 Score=28.98 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=21.2
Q ss_pred CCcceeeeeEeCCCCCCCC------C-CcCCCCC---CCCcccccccccCCCCCCCCCC
Q psy7163 2 NSKYHYYGIRVKPDSPLNN------I-PLSDENG---GNSKYHYYGIRVKPDSPLNNIP 50 (544)
Q Consensus 2 nskyhyyg~r~kp~sPlnr------~-~~rlgtr---g~skyhYygiRiKp~S~~~r~~ 50 (544)
...||.+ ||+-||-|+-. . -.|+||| |=-+=.|..-||||.-.+..+.
T Consensus 51 k~~~~iw-IRifP~~~ir~nkmlT~kgadRlq~gMg~gkG~p~~wvArVk~G~ilfei~ 108 (151)
T 2pa2_A 51 KDGFHIR-VRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIR 108 (151)
T ss_dssp TTSEEEE-ECCSCC-----------------------------CCEEEECTTBEEEEEE
T ss_pred CcCcEEE-EEECCCeeEeecccccccchhhhhcccccCCCCccEEEEEECCCCEEEEEE
Confidence 3446655 89999998821 1 3667776 5556778888999877766554
No 8
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=10.39 E-value=89 Score=26.36 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=28.3
Q ss_pred HHHhHHHHHHHHHHHhcccccccCChhH----HHHHHHHH
Q psy7163 273 VRRVDFLFYQNLVEVLIPDVLRPIPGSL----TSSIRNFA 308 (544)
Q Consensus 273 I~~CD~ilYq~Lv~~Lip~vLq~VP~~l----l~~IR~FA 308 (544)
|.+-|.+.|..|+..+.|....-||+++ ++.||.|-
T Consensus 50 i~~~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL 89 (96)
T 3mhs_B 50 MNINESTNFTQILSTVEPKALEMVSDSTRETVLKQIREFL 89 (96)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHHHHHH
Confidence 4444888999999999999999999877 55666653
No 9
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=9.82 E-value=1.7e+02 Score=24.79 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcccccccCChhH----HHHHHHHH
Q psy7163 277 DFLFYQNLVEVLIPDVLRPIPGSL----TSSIRNFA 308 (544)
Q Consensus 277 D~ilYq~Lv~~Lip~vLq~VP~~l----l~~IR~FA 308 (544)
|.+.|..++..+.|..-.-||+++ ++.||+|-
T Consensus 60 ~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~rIr~fL 95 (101)
T 4dhx_B 60 EHVTVDDLVAEITPKGRALVPDSVKKELLQRIRTFL 95 (101)
T ss_dssp TTCCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHHHHHH
Confidence 567888999999999988888876 55666663
No 10
>1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular transglucosylation, isomerase; HET: MLZ MLY; 1.90A {Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1
Probab=8.58 E-value=7.5e+02 Score=27.84 Aligned_cols=69 Identities=14% Similarity=0.293 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcccccccCChhHHHHHHHHHHHHHHHHHHHHhc--------CCHHHHHHH--------------HHHH
Q psy7163 277 DFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQG--------CPQEMINIK--------------VTAV 334 (544)
Q Consensus 277 D~ilYq~Lv~~Lip~vLq~VP~~ll~~IR~FAk~Le~wL~~Al~~--------lP~~lv~~K--------------l~~a 334 (544)
...+||+|+..- | ..+| ..|+.++..|+.+|+.. -|..--+.. +...
T Consensus 484 ~~~l~Q~l~g~w-p---~~~~-------~~~~~R~~~~~~Ka~rEak~~t~W~~p~~~ye~~~~~~~~~~l~~~~~~~~~ 552 (720)
T 1iv8_A 484 EYRYYQVLVGSF-Y---EGFS-------NDFXERIXQHMIXSVREAXINTSWRNQNKEYENRVMELVEETFTNKDFIKSF 552 (720)
T ss_dssp HHHHHHHHHHHC-T---TCSC-------HHHHHHHHHHHHHHHHHHTSSCCSSSCCHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHhhC-c---ccch-------HHHHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHHhcccchHHHHH
Confidence 358999999776 3 2232 26778888888887751 244333333 3445
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q psy7163 335 GAFAQMLRRYTSLNHLAQAARA 356 (544)
Q Consensus 335 ~~F~qlLrR~tsLnhlAqAAr~ 356 (544)
..|++.+.++-.+|-|+|++-.
T Consensus 553 ~~~~~~~~~~g~~nsl~q~ll~ 574 (720)
T 1iv8_A 553 MKFESXIRRIGMIKSLSLVALK 574 (720)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHH
Confidence 6666666666677777766643
Done!