RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7163
         (544 letters)



>d1dp7p_ a.4.5.20 (P:) Class II MHC transcription factor RFX1
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 76

 Score = 31.7 bits (72), Expect = 0.026
 Identities = 11/13 (84%), Positives = 13/13 (100%)

Query: 1  GNSKYHYYGIRVK 13
          GNSKYHYYG+R+K
Sbjct: 63 GNSKYHYYGLRIK 75



 Score = 31.7 bits (72), Expect = 0.026
 Identities = 11/13 (84%), Positives = 13/13 (100%)

Query: 29 GNSKYHYYGIRVK 41
          GNSKYHYYG+R+K
Sbjct: 63 GNSKYHYYGLRIK 75


>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 147

 Score = 26.6 bits (58), Expect = 5.6
 Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 2/38 (5%)

Query: 376 FHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEE 413
               + +A+WV      L  QL++       Q  +LE+
Sbjct: 110 APTPEIKAAWVNAIRKVLTSQLQAC--REASQHRALEQ 145


>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein
           {Sandworm (Nereis diversicolor) [TaxId: 126592]}
          Length = 174

 Score = 26.2 bits (56), Expect = 8.7
 Identities = 10/149 (6%), Positives = 42/149 (28%), Gaps = 2/149 (1%)

Query: 101 GDGSNAIPDFPEI--DLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESL 158
            DG+    DF  +    +++   +    + +    +   ++    +     +D +T  + 
Sbjct: 19  KDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGIDETTFINS 78

Query: 159 WREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAF 218
            +E  ++ +  +  E     +         +     +  +        + +         
Sbjct: 79  MKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLDKTMAPASFDAID 138

Query: 219 LDAIVTLDFSTIESLWREFWRSQDNNNGD 247
            +    L          +F+ +  ++   
Sbjct: 139 TNNDGLLSLEEFVIAGSDFFMNDGDSTNK 167


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0412    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,065,046
Number of extensions: 96085
Number of successful extensions: 227
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 6
Length of query: 544
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 454
Effective length of database: 1,171,896
Effective search space: 532040784
Effective search space used: 532040784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)