BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7164
(2307 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|170047758|ref|XP_001851377.1| DNA topoisomerase 2 [Culex quinquefasciatus]
gi|167870064|gb|EDS33447.1| DNA topoisomerase 2 [Culex quinquefasciatus]
Length = 1358
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/665 (64%), Positives = 486/665 (73%), Gaps = 107/665 (16%)
Query: 14 QNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHM 73
QNG+G S+EKIYQKKSQLEHILLRPDTYIGSVE + ET W+ + E N M
Sbjct: 27 QNGSGAGATASPKVGGKSIEKIYQKKSQLEHILLRPDTYIGSVEQLKETQWIYDTEANKM 86
Query: 74 ERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEH 133
++EIT+VPGLYKIFDEILVNA DNKQRD KM IKI +NQETNTIS+WNNG+GIPVV H
Sbjct: 87 IQKEITFVPGLYKIFDEILVNAADNKQRDAKMTAIKIDINQETNTISIWNNGQGIPVVMH 146
Query: 134 KDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGY 193
K+EKM+VPTMIFGHLLTSSNYND EE KVTGGRNGY
Sbjct: 147 KEEKMYVPTMIFGHLLTSSNYND-------------------------EEQKVTGGRNGY 181
Query: 194 GAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSG-SKDDFTKITFTPDLT 252
GAKLCNIFS+KF VET+ +YKK+FKQ W DNMSK + P+IK G S +D+TKITF+PDLT
Sbjct: 182 GAKLCNIFSTKFTVETASKQYKKAFKQTWGDNMSKASEPKIKEGASGEDYTKITFSPDLT 241
Query: 253 KFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDED-GD 311
KFKM LD D+V L++RRA+D AAST+ V V+LNG+KLP+KNF+DY+ LY Q ED
Sbjct: 242 KFKMEKLDDDIVGLMSRRAFDVAASTRGVAVYLNGKKLPIKNFKDYIDLYVKEQQEDVSA 301
Query: 312 PVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK 371
P+K+ YEN N RWEVA+A S++GFQQVSFVNSIATTKGGRHVD V D IVKQ+IEV+KKK
Sbjct: 302 PIKVCYENANERWEVAVAISEKGFQQVSFVNSIATTKGGRHVDYVTDMIVKQLIEVLKKK 361
Query: 372 NKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIV 431
NK GG+ +KPFQVKNH+W+FINCLIV
Sbjct: 362 NK-----------------------------------GGINIKPFQVKNHMWVFINCLIV 386
Query: 432 NPTFDSQTKENMTLQKGSFGSTC------------------------------------- 454
NPTFDSQTKENMTLQ SFGS C
Sbjct: 387 NPTFDSQTKENMTLQAKSFGSKCALSEKFITAVSKSGIVESVLQWAKFKAQTELNKASGS 446
Query: 455 -------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKL 507
VPKLEDANDAGTKNS++CTLILTEGDSAK+LAVSGLGVVGRD YGVFPLRGKL
Sbjct: 447 KKSKIKGVPKLEDANDAGTKNSLNCTLILTEGDSAKTLAVSGLGVVGRDTYGVFPLRGKL 506
Query: 508 LNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIK 567
LNVREATHKQILENAEINNL+KILGLQY KKY T++D+KTLRYG++MIMTDQDQDGSHIK
Sbjct: 507 LNVREATHKQILENAEINNLIKILGLQYKKKYLTIDDLKTLRYGKVMIMTDQDQDGSHIK 566
Query: 568 GLIINFIHHNWPTLLRLPFLEEFITPIIKATKAR-EELSFYSLPEFEEWKEETTNWHTYK 626
GL+INFIH NWP LLRLPFLEEFITPI+KATK EELSF+SLPEFEEWK ET N HTY
Sbjct: 567 GLLINFIHTNWPELLRLPFLEEFITPIVKATKKNGEELSFFSLPEFEEWKTETANSHTYN 626
Query: 627 IKYYK 631
IKYYK
Sbjct: 627 IKYYK 631
Score = 156 bits (395), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 65/115 (56%), Positives = 92/115 (80%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP WY+PIIPMVLVNG+EGIGTGW TKIP HNPR+I+ N++RM+ GE+P + PWYKN
Sbjct: 852 KIEPLWYLPIIPMVLVNGSEGIGTGWSTKIPLHNPRDIIANLRRMLNGEEPKVLHPWYKN 911
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F+G ++ G +++ G +++L++ K+EI+EL +G WT YK+ TL+ LLHG+EK
Sbjct: 912 FRGSVEVVGPQKYLTVGNLSLLENQKIEISELPIGTWTQVYKENTLEPLLHGSEK 966
Score = 48.1 bits (113), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 16/63 (25%)
Query: 850 KDYDYLLGMTFWSLTMERK--------NELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
K +DYLLGM+ W LT ERK N K++EL+ +K K LW+DDLDAL
Sbjct: 1158 KKFDYLLGMSMWMLTDERKNELLKQRDN--------KLSELSAIKAKTSEVLWTDDLDAL 1209
Query: 902 REK 904
+K
Sbjct: 1210 AKK 1212
>gi|328724888|ref|XP_001948540.2| PREDICTED: DNA topoisomerase 2-like isoform 1 [Acyrthosiphon pisum]
gi|328724890|ref|XP_003248280.1| PREDICTED: DNA topoisomerase 2-like isoform 2 [Acyrthosiphon pisum]
Length = 1537
Score = 859 bits (2220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/663 (63%), Positives = 490/663 (73%), Gaps = 108/663 (16%)
Query: 14 QNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHM 73
+NG P+ K + K +VE+IYQKKSQLEHILLRPDTYIGSVEP+TE+MW+ + E + M
Sbjct: 5 ENGTPPAAPK---SKKTAVEEIYQKKSQLEHILLRPDTYIGSVEPVTESMWVYDTEEDSM 61
Query: 74 ERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEH 133
+REITYVPGLYKIFDEILVNA DNKQRD M+ IKI +N+E N ISVWNNGKGIPVVEH
Sbjct: 62 VQREITYVPGLYKIFDEILVNAADNKQRDQTMDTIKIDINKEENIISVWNNGKGIPVVEH 121
Query: 134 KDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGY 193
KDEKM+VPTMI FGHLLTSSNYNDEE KVTGGRNG+
Sbjct: 122 KDEKMYVPTMI-------------------------FGHLLTSSNYNDEEAKVTGGRNGF 156
Query: 194 GAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTK 253
GAKLCNIFS+KF VET+ EY+K+FKQ W DNM+K + P IK D+TK++F+PDL K
Sbjct: 157 GAKLCNIFSNKFTVETASREYRKAFKQTWADNMAKSSDPSIKEVKTTDYTKVSFSPDLAK 216
Query: 254 FKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD-RQDEDGDP 312
F+MT LDKD+VDL++RRAYD AAST+ V+V+LNG+ LP+K FQDYV LY ++DE G+P
Sbjct: 217 FRMTCLDKDIVDLMSRRAYDVAASTRGVRVYLNGKLLPIKTFQDYVNLYIKGKEDEIGNP 276
Query: 313 VKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKN 372
+K++YEN RWEVA+ SD GF+QVSFVNSIATTKGGRHVD + D IVKQ+ ++VKK+N
Sbjct: 277 LKLVYENAGQRWEVAVTMSDTGFKQVSFVNSIATTKGGRHVDYITDMIVKQLTDIVKKRN 336
Query: 373 KDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVN 432
K GGM LK QVKNH+W+F+NCLIVN
Sbjct: 337 K-----------------------------------GGMDLKNHQVKNHLWVFVNCLIVN 361
Query: 433 PTFDSQTKENMTLQKGSFGSTC-------------------------------------- 454
PTFDSQTKE+MTLQ +FGS C
Sbjct: 362 PTFDSQTKEHMTLQVKNFGSKCTLSEKFVTGVSKCGIVEAVLSWAKFKAQTQLQKQSGKK 421
Query: 455 ------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLL 508
VPKLEDANDAGT+NSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLL
Sbjct: 422 QSKLKGVPKLEDANDAGTRNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLL 481
Query: 509 NVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKG 568
NVREA+HKQI++NAEI+N+VKI+GLQY KKY T+ED+K+LRYGRLMIMTDQDQDGSHIKG
Sbjct: 482 NVREASHKQIMDNAEISNIVKIVGLQYKKKYETMEDLKSLRYGRLMIMTDQDQDGSHIKG 541
Query: 569 LIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIK 628
LIINFIHHNWPTLL+LPFLEEFITPI+KATK ++E SFYSLPEFEEWK+ T NW+ YKIK
Sbjct: 542 LIINFIHHNWPTLLKLPFLEEFITPIVKATKGKDETSFYSLPEFEEWKDATRNWNKYKIK 601
Query: 629 YYK 631
YYK
Sbjct: 602 YYK 604
Score = 174 bits (442), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 74/115 (64%), Positives = 95/115 (82%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP WY+PIIPMVLVNGAEGIGTGWMTKIPNHNPRE++ NIKRM+RGEDPLPMKPWYKN
Sbjct: 825 KIEPVWYMPIIPMVLVNGAEGIGTGWMTKIPNHNPREVISNIKRMLRGEDPLPMKPWYKN 884
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
F G I+ + +F+ +GE+ ++ +++EITEL VG WT +YK++ L+ +L EK
Sbjct: 885 FTGHIEKLSEQKFISSGELGVIGHNRVEITELPVGVWTQNYKESVLEPMLTDTEK 939
Score = 73.2 bits (178), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 42/45 (93%)
Query: 857 GMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
GM+FW LT+E+KN+LL+K+++K TEL+ILKKK+P DLW++DLDAL
Sbjct: 1128 GMSFWHLTLEKKNDLLRKKEEKCTELDILKKKSPADLWTEDLDAL 1172
>gi|158299572|ref|XP_319665.4| AGAP008917-PA [Anopheles gambiae str. PEST]
gi|157013582|gb|EAA14841.5| AGAP008917-PA [Anopheles gambiae str. PEST]
Length = 1427
Score = 853 bits (2205), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/648 (65%), Positives = 482/648 (74%), Gaps = 107/648 (16%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
S+EKIYQKKSQLEHILLRPDTYIGSVE + E MW+ ++E N M +R+ITYVPGLYKIFDE
Sbjct: 6 SIEKIYQKKSQLEHILLRPDTYIGSVEMVKEPMWIFDKEANKMVQRDITYVPGLYKIFDE 65
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNKQRDPKM+ IK+ +NQETNTISVWN+G GIPVV HK+EKM+VPTMIFGHLLT
Sbjct: 66 ILVNAADNKQRDPKMSTIKVEINQETNTISVWNDGHGIPVVMHKEEKMYVPTMIFGHLLT 125
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
SSNYNDE E+KVTGGRNGYGAKLCNIFS+KF VET+
Sbjct: 126 SSNYNDE-------------------------EEKVTGGRNGYGAKLCNIFSTKFTVETA 160
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSG-SKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
+YKK FKQ W DNMSK T P+IK +D+TKITF+PDL+KFKM LD D+V L++R
Sbjct: 161 SKQYKKCFKQTWGDNMSKTTEPKIKEDFFGNDYTKITFSPDLSKFKMEKLDDDIVGLLSR 220
Query: 270 RAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAI 328
RAYD AAST+ V V+LNG ++PVKNF+DY+ L+ D D+ G PVK+ YE+VN RWEVA+
Sbjct: 221 RAYDVAASTRGVSVYLNGTRVPVKNFKDYIDLFLRDTTDDVGAPVKMCYESVNERWEVAV 280
Query: 329 APSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
A S+RGFQQVSFVNSIATTKGGRHVD V D IVKQ+IEV+KKKNK
Sbjct: 281 AISERGFQQVSFVNSIATTKGGRHVDYVSDMIVKQLIEVLKKKNK--------------- 325
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
GG+ +KPFQVKNH+W+FINCLIVNPTFDSQTKENMTLQ
Sbjct: 326 --------------------GGVTIKPFQVKNHMWVFINCLIVNPTFDSQTKENMTLQSK 365
Query: 449 SFGSTC--------------------------------------------VPKLEDANDA 464
SFGS C +PKLEDANDA
Sbjct: 366 SFGSKCALSEKFITAVSKSGIVESVLQWAKFKAQTDLAKTSGSKKSKIKGIPKLEDANDA 425
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
G++NS++CTLILTEGDSAK+LAVSGLGVVGRD YGVFPLRGKLLNVREATHKQILENAEI
Sbjct: 426 GSRNSLNCTLILTEGDSAKTLAVSGLGVVGRDTYGVFPLRGKLLNVREATHKQILENAEI 485
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
NNL+KILGLQY KKY T++D+KTLRYG++MIMTDQDQDGSHIKGL+INFIH NWP LLRL
Sbjct: 486 NNLIKILGLQYKKKYLTMDDLKTLRYGKVMIMTDQDQDGSHIKGLLINFIHTNWPELLRL 545
Query: 585 PFLEEFITPIIKATKAR-EELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
PFLEEFITPI+KATK EELSF+SLPEFEEWK ET N HTY IKYYK
Sbjct: 546 PFLEEFITPIVKATKKNGEELSFFSLPEFEEWKAETANSHTYNIKYYK 593
Score = 158 bits (399), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 64/115 (55%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEP WY+PIIPM+L+NGA+GIGTGW TKIPNHNPR+++ NI+RM+ G++P + PWYKN
Sbjct: 814 RIEPVWYLPIIPMLLINGADGIGTGWATKIPNHNPRDVIANIRRMLNGDEPKMLTPWYKN 873
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F+G I+ G +++ G + +LD K+EI+EL +G WT YK+ L+ LLHG++K
Sbjct: 874 FRGVIESVGHQKYLTAGTVGLLDGKKIEISELPIGTWTQTYKENVLEPLLHGSDK 928
Score = 68.9 bits (167), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 39/55 (70%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
K ++YLLGM+ W LT ERKNE+LK+RD K+ EL L+ K LW DDLDAL K
Sbjct: 1129 KKFNYLLGMSMWMLTEERKNEILKQRDQKLAELKSLEAKTVQGLWMDDLDALSRK 1183
>gi|157167886|ref|XP_001656143.1| DNA topoisomerase/gyrase [Aedes aegypti]
gi|108871009|gb|EAT35234.1| AAEL012584-PA, partial [Aedes aegypti]
Length = 1300
Score = 851 bits (2199), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/666 (64%), Positives = 485/666 (72%), Gaps = 108/666 (16%)
Query: 14 QNGNGPSPKKKTP-ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNH 72
QNG + +P S+EKIYQKKSQLEHILLRPDTYIGSVE + ETMW+ + E
Sbjct: 11 QNGAPTAGTTSSPKIGGKSIEKIYQKKSQLEHILLRPDTYIGSVEHLKETMWIYDGELKK 70
Query: 73 MERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVE 132
M +REI YVPGLYKIFDEILVNA DNKQRD KM+ IKI +NQETNT+S+WNNG+GIPVV
Sbjct: 71 MVQREINYVPGLYKIFDEILVNAADNKQRDAKMSAIKIDINQETNTVSIWNNGQGIPVVM 130
Query: 133 HKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNG 192
HK EKMFVPTMIFGHLLTSSNYNDE E+KVTGGRNG
Sbjct: 131 HKGEKMFVPTMIFGHLLTSSNYNDE-------------------------EEKVTGGRNG 165
Query: 193 YGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSG-SKDDFTKITFTPDL 251
YGAKLCNIFS+KF VET+ +YKK FKQ W DNMSK + P+IK S +D+TKITF+PDL
Sbjct: 166 YGAKLCNIFSTKFTVETATKQYKKCFKQTWGDNMSKASEPKIKEDYSGEDYTKITFSPDL 225
Query: 252 TKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDG 310
KFKM LD D+V L++RRA+D AAST+ V V+LNG KLPVK+F+DY+ LY D+QD+ G
Sbjct: 226 KKFKMEKLDNDIVGLMSRRAFDVAASTRGVSVYLNGTKLPVKSFKDYIDLYIKDQQDDIG 285
Query: 311 DPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKK 370
VK++YEN N RWEVA+ SDRGFQQVSFVNSIATTKGGRHVD + D IVKQ+IEV+KK
Sbjct: 286 SQVKVVYENCNERWEVAVTLSDRGFQQVSFVNSIATTKGGRHVDYITDMIVKQLIEVLKK 345
Query: 371 KNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLI 430
KNK GG+ +KPFQVKNH+W+FINCLI
Sbjct: 346 KNK-----------------------------------GGVNIKPFQVKNHMWVFINCLI 370
Query: 431 VNPTFDSQTKENMTLQKGSFGSTC------------------------------------ 454
VNPTFDSQTKENMTLQ SFGS C
Sbjct: 371 VNPTFDSQTKENMTLQAKSFGSKCTLSEKFINNMSKIGIVESVLQWAKFKAQTELNKASG 430
Query: 455 --------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGK 506
VPKLEDANDAG++NS++CTLILTEGDSAK+LAVSGLGVVGRD YGVFPLRGK
Sbjct: 431 SKKSKVKGVPKLEDANDAGSRNSLNCTLILTEGDSAKTLAVSGLGVVGRDTYGVFPLRGK 490
Query: 507 LLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHI 566
LLNVREATHKQILENAEINNL+KI+GLQY KKY T++D+KTLRYG+LMIMTDQDQDGSHI
Sbjct: 491 LLNVREATHKQILENAEINNLIKIIGLQYKKKYITMDDLKTLRYGKLMIMTDQDQDGSHI 550
Query: 567 KGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAR-EELSFYSLPEFEEWKEETTNWHTY 625
KGL+INFIH NWP LLRLPFLEEFITPI+KATK EELSF+SLPEFEEWK ET N HTY
Sbjct: 551 KGLLINFIHTNWPELLRLPFLEEFITPIVKATKKNGEELSFFSLPEFEEWKTETPNAHTY 610
Query: 626 KIKYYK 631
IKYYK
Sbjct: 611 NIKYYK 616
Score = 161 bits (408), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 92/115 (80%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP WY+PIIPMVLVNG EGIGTGW TKIPNHNPR+I+ N++RM+ GE+P M PWYKN
Sbjct: 837 KIEPLWYLPIIPMVLVNGTEGIGTGWSTKIPNHNPRDIISNLRRMLNGEEPKIMHPWYKN 896
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F+GEI+ G R++ G +++LD+ K+EI+EL +G WT YK+ TL+ L +G++K
Sbjct: 897 FRGEIESVGHQRYLTVGNVSLLDNQKIEISELPIGTWTQTYKENTLEPLANGSDK 951
Score = 72.0 bits (175), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 42/55 (76%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
K +DYLLGM+ W LT ERKNELLK+RD K++EL+ LK K LW DDLDAL +K
Sbjct: 1142 KKFDYLLGMSMWMLTDERKNELLKQRDAKLSELSSLKAKTLEMLWVDDLDALSKK 1196
Score = 41.6 bits (96), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 1047 RLDEVERKEKEEENSNITKIKSKLKEKGS----KKRNPLSSLDDTMPSAAGRRVEPKY-E 1101
+LDEVE KE+ + S K+KS KG K + S++D+T PS G V+ K E
Sbjct: 1196 KLDEVEEKERLDAISTEKKLKSGGAAKGGRGTVKSFSKKSAIDETKPSDMGEEVKFKVSE 1255
Query: 1102 ELLIKAEKAAAP 1113
ELL K EKA AP
Sbjct: 1256 ELLKKYEKATAP 1267
>gi|242016991|ref|XP_002428978.1| DNA topoisomerase 2-beta, putative [Pediculus humanus corporis]
gi|212513807|gb|EEB16240.1| DNA topoisomerase 2-beta, putative [Pediculus humanus corporis]
Length = 1223
Score = 850 bits (2197), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/669 (63%), Positives = 491/669 (73%), Gaps = 109/669 (16%)
Query: 9 DPDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNR 68
D ++ N P+ K K+ K +VE+IYQKKSQLEHILLRPDTYIGSVEP+ E MW+ +
Sbjct: 13 DNEIHNNAVPPAKKIKS---KTTVEEIYQKKSQLEHILLRPDTYIGSVEPVKENMWIYDN 69
Query: 69 ETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGI 128
ET M +++ITYVPGLYKIFDEILVNA DNKQRD KM+CIKI ++ E NT+SVWNNG+GI
Sbjct: 70 ETEKMIQKDITYVPGLYKIFDEILVNAADNKQRDKKMDCIKIDIDAENNTVSVWNNGQGI 129
Query: 129 PVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTG 188
PVVEHK+EKMFVPTMI FG+LLTSSNYNDEE+KVTG
Sbjct: 130 PVVEHKEEKMFVPTMI-------------------------FGYLLTSSNYNDEEEKVTG 164
Query: 189 GRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFT 248
GRNGYGAKLCNIFS+KF +ET+ EYK+ FKQ W +NM+K T P+I +DFTK+TF+
Sbjct: 165 GRNGYGAKLCNIFSTKFTLETASIEYKRKFKQTWANNMTKTTDPKISDFFGEDFTKVTFS 224
Query: 249 PDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD-RQD 307
PDL KFKMT LDKD+VDL++RRAYD AAST+ VKV LNG++LP+K+F+DYV+LYT ++D
Sbjct: 225 PDLAKFKMTHLDKDIVDLMSRRAYDVAASTRGVKVILNGKRLPIKSFKDYVELYTKGKED 284
Query: 308 EDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEV 367
+ G+PVKIIYENVN RWEVA+ SD FQQVSFVNSIATTKGGRHVD V D +VK+++EV
Sbjct: 285 DAGNPVKIIYENVNERWEVAVTMSDNDFQQVSFVNSIATTKGGRHVDHVTDILVKKLLEV 344
Query: 368 VKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFIN 427
KKNK GM LK Q+KNH+WIFIN
Sbjct: 345 CNKKNK-----------------------------------AGMQLKAHQIKNHLWIFIN 369
Query: 428 CLIVNPTFDSQTKENMTLQKGSFGSTC--------------------------------- 454
CLIVNPTFDSQTK +MTLQ +FGS C
Sbjct: 370 CLIVNPTFDSQTKTHMTLQMKNFGSKCTLSDKFITNVTKCGVIEAVLSWAKFKAEAQMDR 429
Query: 455 ------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFP 502
+ KLEDANDAGTKNS++CTLILTEGDSAKSLAVSGLGVVGRDKYGVFP
Sbjct: 430 KCSGKKMTKLKGIAKLEDANDAGTKNSVNCTLILTEGDSAKSLAVSGLGVVGRDKYGVFP 489
Query: 503 LRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQD 562
LRGKLLNVREATHKQILENAEINNL+KILGLQY KKY + +D+KTLRYG+LMIMTDQDQD
Sbjct: 490 LRGKLLNVREATHKQILENAEINNLIKILGLQYKKKYESSDDLKTLRYGKLMIMTDQDQD 549
Query: 563 GSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNW 622
GSHIKGLIINFIHHNWP+LLRLPFLEEFITPI+KATK +EELSFYSLPEFE+WK+ T N
Sbjct: 550 GSHIKGLIINFIHHNWPSLLRLPFLEEFITPIVKATKGKEELSFYSLPEFEDWKKATENA 609
Query: 623 HTYKIKYYK 631
H Y+ KYYK
Sbjct: 610 HLYRTKYYK 618
Score = 187 bits (475), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 83/114 (72%), Positives = 100/114 (87%), Gaps = 1/114 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPEWYIPIIPMVLVNGA+GIGTGWMTKIPNHNPREIV NIKRM+ G++PLPMKPWYK
Sbjct: 839 KIEPEWYIPIIPMVLVNGADGIGTGWMTKIPNHNPREIVQNIKRMLDGDEPLPMKPWYKG 898
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYK-DTLDTLLHGAE 771
FKG+I+ GDSR++V+GEI+I+ +++LEITEL VG WT YK + L+ LLHG E
Sbjct: 899 FKGDIESYGDSRYLVSGEISIISNNQLEITELPVGTWTQAYKENVLEPLLHGVE 952
Score = 82.4 bits (202), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/54 (70%), Positives = 44/54 (81%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
DYDYLLGM WSLT+ERKNELLKKRDDK+ EL L+ K+P+ LW +DLDA EK
Sbjct: 1129 DYDYLLGMPLWSLTLERKNELLKKRDDKIKELKSLQAKSPSLLWREDLDAFLEK 1182
>gi|312376011|gb|EFR23229.1| hypothetical protein AND_13286 [Anopheles darlingi]
Length = 1530
Score = 845 bits (2182), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/668 (62%), Positives = 488/668 (73%), Gaps = 108/668 (16%)
Query: 12 VQQNGNGPSPKKKTPA-NKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRET 70
QQNG + +P S+EKIYQKKSQLEHILLRPDTYIGS+E + E MW+ ++E+
Sbjct: 10 AQQNGAALAAATGSPKIGGKSIEKIYQKKSQLEHILLRPDTYIGSIEMLKEQMWIYDKES 69
Query: 71 NHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPV 130
N M ++EITYVPGLYKIFDEILVNA DNKQRD KM+ IK+ +NQETNTISVWNNG+GIPV
Sbjct: 70 NKMVQKEITYVPGLYKIFDEILVNAADNKQRDAKMSTIKVEINQETNTISVWNNGQGIPV 129
Query: 131 VEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGR 190
V HK+EKM+VPTMI FGHLLTSSNYNDEE KVTGGR
Sbjct: 130 VMHKEEKMYVPTMI-------------------------FGHLLTSSNYNDEEAKVTGGR 164
Query: 191 NGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSG-SKDDFTKITFTP 249
NGYGAKLCNIFS+KF VET+ +YKK FKQ W DNMSK + P+IK + +D+TKITF+P
Sbjct: 165 NGYGAKLCNIFSTKFTVETATKQYKKCFKQTWGDNMSKASEPKIKEDFNGEDYTKITFSP 224
Query: 250 DLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDE 308
DL+KFKM LD D++ L++RRA+D AAST+ V V+LNG ++PVK+F+DYV L+ D +D+
Sbjct: 225 DLSKFKMEKLDDDIIGLLSRRAFDVAASTRGVAVYLNGSRVPVKSFKDYVDLFLKDAKDD 284
Query: 309 DGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVV 368
G VK+ YE+VN RWEVA+A S+RGFQQVSFVNSIATTKGGRHVD V D +VKQ+ EV+
Sbjct: 285 VGGQVKMCYESVNERWEVAVAISERGFQQVSFVNSIATTKGGRHVDYVTDMVVKQLTEVL 344
Query: 369 KKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINC 428
KKKNK GG+A+KPFQ+KNH+W+F+NC
Sbjct: 345 KKKNK-----------------------------------GGVAIKPFQIKNHMWVFVNC 369
Query: 429 LIVNPTFDSQTKENMTLQKGSFGSTC---------------------------------- 454
LIVNPTFDSQTKENMTLQ SFGS C
Sbjct: 370 LIVNPTFDSQTKENMTLQSKSFGSKCNLSEKFINAVAKSGIVESVLQWAKFKAQTDLAKT 429
Query: 455 ----------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLR 504
+PKLEDANDAG++NS++CTLILTEGDSAK+LAVSGLGVVGRD YGVFPLR
Sbjct: 430 SGSKKSKIKGIPKLEDANDAGSRNSLNCTLILTEGDSAKTLAVSGLGVVGRDTYGVFPLR 489
Query: 505 GKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGS 564
GKLLNVREATHKQILENAEINNL+KILGLQY KKY T +D+KTLRYG++MIMTDQDQDGS
Sbjct: 490 GKLLNVREATHKQILENAEINNLIKILGLQYKKKYLTTDDLKTLRYGKVMIMTDQDQDGS 549
Query: 565 HIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAR-EELSFYSLPEFEEWKEETTNWH 623
HIKGL+INFIH NWP LLRLPFLEEFITPI+KATK ELSF+SLPEFEEWK ET N H
Sbjct: 550 HIKGLLINFIHTNWPELLRLPFLEEFITPIVKATKKNGTELSFFSLPEFEEWKAETPNAH 609
Query: 624 TYKIKYYK 631
T+ IKYYK
Sbjct: 610 TFNIKYYK 617
Score = 162 bits (410), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEP WY+PIIPM+LVNGAEGIGTGW TKIPNHNPR+++ NI+RM+ GE+P + PWYKN
Sbjct: 838 RIEPVWYLPIIPMLLVNGAEGIGTGWSTKIPNHNPRDVIANIRRMLNGEEPKVLNPWYKN 897
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F+G ++ G +++ G +A+LD K+EI+EL +G WT YK+ L+ LLHG++K
Sbjct: 898 FRGLVESVGHQKYLTVGNVALLDGQKIEISELPIGTWTQTYKENVLEPLLHGSDK 952
Score = 67.8 bits (164), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 39/55 (70%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
K +DYLLGM+ W LT ERKNE+LK+RD K+ EL L+ K LW +DLDAL K
Sbjct: 1154 KKFDYLLGMSMWMLTEERKNEILKQRDQKLMELKSLQAKTLQMLWMEDLDALSRK 1208
>gi|307180209|gb|EFN68242.1| DNA topoisomerase 2 [Camponotus floridanus]
Length = 1502
Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/667 (61%), Positives = 483/667 (72%), Gaps = 115/667 (17%)
Query: 14 QNGNG---PSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRET 70
+NG G PS K+KT +E IYQKKSQLEHILLRPDTYIGSVEP+TE MW+ ++E
Sbjct: 6 ENGAGDGKPSTKQKT------IEGIYQKKSQLEHILLRPDTYIGSVEPVTEMMWVFDKEK 59
Query: 71 NHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPV 130
+ M +++I YVPGLYKIFDEILVNA DNKQRDPKM+ IKI ++ E NTISVWNNGKGIPV
Sbjct: 60 DMMIQKDIKYVPGLYKIFDEILVNAADNKQRDPKMDMIKIDIDSENNTISVWNNGKGIPV 119
Query: 131 VEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGR 190
V HK+E M+VPTMIFGHLLTSSNY+DE E+KVTGGR
Sbjct: 120 VIHKEENMYVPTMIFGHLLTSSNYDDE-------------------------EEKVTGGR 154
Query: 191 NGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPD 250
NGYGAKLCNIFS +F VET+ EYKK KQ W DNM K + P IK DDFTK+TF+PD
Sbjct: 155 NGYGAKLCNIFSHRFTVETATKEYKKCLKQTWGDNMGKASEPRIKEYHGDDFTKVTFSPD 214
Query: 251 LTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD-RQDED 309
L+KFKM SLD D+V L++RRAYD AAS+K VKV+LNG ++PVKNF+DYV Y ++D+
Sbjct: 215 LSKFKMQSLDNDIVGLMSRRAYDVAASSKGVKVYLNGSRIPVKNFKDYVDFYIKGKEDDV 274
Query: 310 GDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVK 369
G+P+KI+YEN PRWEVA+ SD+GFQQ+SFVNSIATTKGGRHVD V + IVKQ+IE +K
Sbjct: 275 GNPLKIVYENCGPRWEVALTLSDKGFQQMSFVNSIATTKGGRHVDHVTELIVKQLIETLK 334
Query: 370 KKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCL 429
KKNK G+A+KPFQ+KNH+WIF+NCL
Sbjct: 335 KKNK-----------------------------------AGVAIKPFQIKNHLWIFVNCL 359
Query: 430 IVNPTFDSQTKENMTLQKGSFGSTCV---------------------------------- 455
I NPTFDSQTKENMTLQ SFGS CV
Sbjct: 360 INNPTFDSQTKENMTLQAKSFGSKCVLTDKFIASITKIGVVEAVLSWAKFKADSQLEKLG 419
Query: 456 -----------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLR 504
PKLEDANDAGT S++CTLILTEGDSAK++AVSG+ +GRDKYG+FPLR
Sbjct: 420 PKSKQRKLHGIPKLEDANDAGTAKSLECTLILTEGDSAKTMAVSGIASIGRDKYGIFPLR 479
Query: 505 GKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGS 564
GK+LNVREATHKQILENAEINNL+KILGLQY KKY T +D+KTLRYG++MIMTDQDQDGS
Sbjct: 480 GKMLNVREATHKQILENAEINNLIKILGLQYKKKYETRDDLKTLRYGKMMIMTDQDQDGS 539
Query: 565 HIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHT 624
HIKGL+INFIHHNWP+LL+L F+EEFITPI+KATK + LSF+SLPEFE WK+ET N+HT
Sbjct: 540 HIKGLLINFIHHNWPSLLKLNFIEEFITPIVKATKGSQTLSFFSLPEFEAWKKETENFHT 599
Query: 625 YKIKYYK 631
YKIKYYK
Sbjct: 600 YKIKYYK 606
Score = 174 bits (442), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 73/115 (63%), Positives = 98/115 (85%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP +Y+P+IPM+LVNGA+GIGTGWMTKIPN+NPREI++N+ RM+ G DP PM P+YKN
Sbjct: 827 KIEPVFYVPVIPMILVNGADGIGTGWMTKIPNYNPREIIENLHRMMDGADPKPMSPYYKN 886
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
FKG ++ CGD R+V++GEI+++ DKLEITEL +G WT YK+T L+ +LHG+EK
Sbjct: 887 FKGVVESCGDYRYVISGEISVIGPDKLEITELPIGTWTQTYKETVLEPMLHGSEK 941
Score = 70.9 bits (172), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 66/110 (60%), Gaps = 6/110 (5%)
Query: 795 IDDDSEEEEIEEVFHDNELAKP---QKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKD 851
I++ +++ I E+ N + P K E+ + E +D+ A + T E++ +
Sbjct: 1057 IENKKKKDMIAELVRRNYDSDPVMVWKLSQNREQVLEEVGEHDDENAPTATAMEKE---N 1113
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
+DYLLGMT W+LT E+K++LL++RD+KM EL L+ + P LW +DLD L
Sbjct: 1114 FDYLLGMTMWTLTKEKKDDLLRQRDEKMAELKRLQVRTPISLWKEDLDNL 1163
>gi|307211209|gb|EFN87409.1| DNA topoisomerase 2 [Harpegnathos saltator]
Length = 1492
Score = 836 bits (2160), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/665 (61%), Positives = 486/665 (73%), Gaps = 113/665 (16%)
Query: 14 QNGNGPS-PKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNH 72
+NG G S PK+KT +E IYQKKSQLEHILLRPDTYIGSVEP+TE MW+ ++E +
Sbjct: 6 ENGAGDSGPKQKT------IEGIYQKKSQLEHILLRPDTYIGSVEPVTEMMWIFDKEKDM 59
Query: 73 MERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVE 132
M +++I YVPGLYKIFDEILVNA DNKQRDPKM+ IKI ++ E NTISVWNNGKGIPVV
Sbjct: 60 MVQKDIKYVPGLYKIFDEILVNAADNKQRDPKMDMIKIDIDSENNTISVWNNGKGIPVVI 119
Query: 133 HKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNG 192
HK+E M+VPTMIFGHLLTSSNY+DE E+KVTGGRNG
Sbjct: 120 HKEENMYVPTMIFGHLLTSSNYDDE-------------------------EEKVTGGRNG 154
Query: 193 YGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLT 252
YGAKLCNIFS +F VET+ EY+KS KQ W +NM K + P IK +DFTK+TF+PDL+
Sbjct: 155 YGAKLCNIFSHRFTVETATKEYRKSLKQTWGNNMGKASEPRIKEYHGEDFTKVTFSPDLS 214
Query: 253 KFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD-RQDEDGD 311
KFKM SLD+D+V L++RRAYD AAS+K VKV+LNG ++PVKNF+DY+ Y ++D+ G+
Sbjct: 215 KFKMQSLDEDIVALMSRRAYDVAASSKGVKVYLNGTRVPVKNFKDYIDFYIKGKEDDVGN 274
Query: 312 PVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK 371
P+KIIYEN PRWEVAI SD+GFQQ+SFVNSIATTKGGRHVD V + IVKQ+IE +KKK
Sbjct: 275 PLKIIYENCGPRWEVAITLSDKGFQQMSFVNSIATTKGGRHVDHVTELIVKQLIETLKKK 334
Query: 372 NKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIV 431
NK G+A+KPFQ+KNH+WIFINCLI
Sbjct: 335 NK-----------------------------------AGVAIKPFQIKNHLWIFINCLIN 359
Query: 432 NPTFDSQTKENMTLQKGSFGSTC------------------------------------- 454
NPTFDSQTKENMTLQ SFGS C
Sbjct: 360 NPTFDSQTKENMTLQAKSFGSKCTLTDKFIANITKIGIVEAVLTWAKFKADSQLQKLGPK 419
Query: 455 --------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGK 506
+PKLEDANDAGT S++CTLILTEGDSAK++AVSG+ +GRDKYG+FPLRGK
Sbjct: 420 SKQRKLQGIPKLEDANDAGTGKSLECTLILTEGDSAKTMAVSGIASIGRDKYGIFPLRGK 479
Query: 507 LLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHI 566
+LNVREATHKQILENAEINNL+KILGLQY KKY T +D+KTLRYG++MIMTDQDQDGSHI
Sbjct: 480 MLNVREATHKQILENAEINNLIKILGLQYKKKYETRDDLKTLRYGKMMIMTDQDQDGSHI 539
Query: 567 KGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYK 626
KGL+INFIHHNWP+LL+L F+EEFITPI+KATK ++LSF+SLPEFE WK+ET N+HTYK
Sbjct: 540 KGLLINFIHHNWPSLLKLNFIEEFITPIVKATKGNQQLSFFSLPEFEMWKKETDNFHTYK 599
Query: 627 IKYYK 631
IKYYK
Sbjct: 600 IKYYK 604
Score = 173 bits (439), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 74/115 (64%), Positives = 99/115 (86%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP +YIP+IPMVLVNGA+GIGTGWMTKIPN+NPREI++N++RM+ G DP PM P+YKN
Sbjct: 825 KIEPVFYIPVIPMVLVNGADGIGTGWMTKIPNYNPREIIENLQRMMDGIDPKPMTPYYKN 884
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
FKG ++ CGD R+V++GEI+++ DKLEITEL +G WT YK+T L+ +LHG++K
Sbjct: 885 FKGVVESCGDFRYVISGEISVIGPDKLEITELPIGTWTQTYKETVLEPMLHGSDK 939
Score = 70.5 bits (171), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 66/110 (60%), Gaps = 4/110 (3%)
Query: 795 IDDDSEEEEIEEVFHDNELAKP---QKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKD 851
I++ +++ I E+ N + P K E+ + AE +D+ A + T + + +
Sbjct: 1055 IENKKKKDMIAELVRRNYESDPVVAWKLSQNREQVLEEVAENDDENAAAATAITMESE-N 1113
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
+DYLLGMT W+LT E+K++LL++RD+K+ EL L+ + P LW +DLD L
Sbjct: 1114 FDYLLGMTMWTLTKEKKDDLLRQRDEKVAELKRLQARTPISLWKEDLDNL 1163
>gi|322786140|gb|EFZ12747.1| hypothetical protein SINV_05088 [Solenopsis invicta]
Length = 1518
Score = 835 bits (2157), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/662 (61%), Positives = 479/662 (72%), Gaps = 106/662 (16%)
Query: 16 GNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMER 75
G+G K T ++E IYQKKSQLEHILLRPDTYIGSVEP+TE MW+ ++E M +
Sbjct: 11 GDGKPAAKSTAGKSKTIEGIYQKKSQLEHILLRPDTYIGSVEPVTEMMWVFDKEKEMMVQ 70
Query: 76 REITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKD 135
+EI YVPGLYKIFDEILVNA DNKQRDPKM+ IKI ++ E NTISVWNNGKGIPVV HK+
Sbjct: 71 KEIKYVPGLYKIFDEILVNAADNKQRDPKMDMIKIDIDSENNTISVWNNGKGIPVVIHKE 130
Query: 136 EKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGA 195
E M+VPTMIFGHLLTSSNY+DE E+KVTGGRNGYGA
Sbjct: 131 ENMYVPTMIFGHLLTSSNYDDE-------------------------EEKVTGGRNGYGA 165
Query: 196 KLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFK 255
KLCNIFS +F VET+ EYKKS KQ W +NM K + P IK +DFTK+TF+PDLTKFK
Sbjct: 166 KLCNIFSHRFTVETATKEYKKSLKQTWGNNMGKASEPRIKEYYGEDFTKVTFSPDLTKFK 225
Query: 256 MTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD-RQDEDGDPVK 314
M SLD D+V L++RRAYD AAS+K VKV+LNG ++PVKNF+DYV Y ++D+ G+P+K
Sbjct: 226 MQSLDDDIVSLMSRRAYDVAASSKGVKVYLNGHRIPVKNFKDYVDCYIKGKEDDVGNPLK 285
Query: 315 IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKD 374
++YEN PRWEVA+ SD+GFQQ+SFVNSIATTKGGRHVD V + IVKQ+IE +KKKNK
Sbjct: 286 VVYENCGPRWEVALTLSDKGFQQMSFVNSIATTKGGRHVDHVTELIVKQLIETLKKKNK- 344
Query: 375 LGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPT 434
G+ +KPFQ+KNH+WIF+NCLI NPT
Sbjct: 345 ----------------------------------AGITIKPFQIKNHLWIFVNCLINNPT 370
Query: 435 FDSQTKENMTLQKGSFGSTC---------------------------------------- 454
FDSQTKENMTLQ+ SFGS C
Sbjct: 371 FDSQTKENMTLQQKSFGSKCALTDKFITSITKIGVVEAVLSWAKFKADSQLEKLGPKSKQ 430
Query: 455 -----VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLN 509
+PKLEDANDAGT S++CTLILTEGDSAK++AVSG+ +GRDKYG+FPLRGK+LN
Sbjct: 431 RKLHGIPKLEDANDAGTARSLECTLILTEGDSAKTMAVSGIASIGRDKYGIFPLRGKMLN 490
Query: 510 VREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGL 569
VREATHKQILENAEINNL+KILGLQY KKY T +D+KTLRYG++MIMTDQDQDGSHIKGL
Sbjct: 491 VREATHKQILENAEINNLIKILGLQYKKKYETRDDLKTLRYGKMMIMTDQDQDGSHIKGL 550
Query: 570 IINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKY 629
+INFIHHNWP+LL+L F+EEFITPI+KATK + LSF+SLPEFE WK+ET N+HTYKIKY
Sbjct: 551 LINFIHHNWPSLLKLNFIEEFITPIVKATKGSQVLSFFSLPEFEMWKKETENFHTYKIKY 610
Query: 630 YK 631
YK
Sbjct: 611 YK 612
Score = 169 bits (428), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 71/115 (61%), Positives = 97/115 (84%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP +Y P+IPMVLVNGA+GIGTGWMTKIPN+NPREI++N+ RM+ G DP PM P+YKN
Sbjct: 833 KIEPVFYTPVIPMVLVNGADGIGTGWMTKIPNYNPREIIENLHRMMDGADPKPMIPYYKN 892
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
FKG ++ CG+ R+V++GEI+++ DK+EITEL +G WT YK+T L+ +LHG++K
Sbjct: 893 FKGSVESCGEYRYVISGEISVIGPDKVEITELPIGTWTQTYKETVLEPMLHGSDK 947
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 834 EDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDL 893
E+DE + T + + + ++DYLLGMT WSLT E+K++LL++RD+K+ EL L+ + P L
Sbjct: 1103 ENDEESAPTTDVIERE-NFDYLLGMTMWSLTKEKKDDLLRQRDEKIAELKRLQARTPMSL 1161
Query: 894 WSDDLDAL 901
W +DLD+L
Sbjct: 1162 WKEDLDSL 1169
>gi|332027283|gb|EGI67367.1| DNA topoisomerase 2 [Acromyrmex echinatior]
Length = 1552
Score = 834 bits (2155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/663 (61%), Positives = 480/663 (72%), Gaps = 109/663 (16%)
Query: 15 NGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHME 74
NG G S K+ + ++E IYQKKSQLEHILLRPDTYIGSVE ITE MW+ ++E M
Sbjct: 54 NGAGNS---KSVTKQKTIEGIYQKKSQLEHILLRPDTYIGSVETITEMMWVFDKEKEMMV 110
Query: 75 RREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHK 134
+++I YVPGLYKIFDEILVNA DNKQRDPKM+ IKI ++ E NTISVWNNGKGIPVV HK
Sbjct: 111 QKDIKYVPGLYKIFDEILVNAADNKQRDPKMDMIKIDIDSENNTISVWNNGKGIPVVIHK 170
Query: 135 DEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYG 194
+E M+VPTMIFGHLLTSSNY+DE E+KVTGGRNGYG
Sbjct: 171 EENMYVPTMIFGHLLTSSNYDDE-------------------------EEKVTGGRNGYG 205
Query: 195 AKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKF 254
AKLCNIFS +F VET+ EYKK KQ W DNM K + P IK +DFTK+TF+PDL+KF
Sbjct: 206 AKLCNIFSHRFTVETATKEYKKCLKQTWGDNMGKASEPRIKEYFGEDFTKVTFSPDLSKF 265
Query: 255 KMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD-RQDEDGDPV 313
KM SLD D+V L++RRAYD AASTK VKVFLNG ++PVKNF+DYV Y ++D+ G+P+
Sbjct: 266 KMQSLDDDIVSLMSRRAYDVAASTKGVKVFLNGSRVPVKNFKDYVDFYIKGKEDDIGNPL 325
Query: 314 KIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNK 373
KI+YEN +PRWEVA+ SD+G+QQ+SFVNSIATTKGGRHVD V + IVKQ+IE +KKKNK
Sbjct: 326 KIVYENCSPRWEVALTLSDKGYQQMSFVNSIATTKGGRHVDHVTELIVKQLIETLKKKNK 385
Query: 374 DLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNP 433
G+A+KPFQ+KNH+WIF+NCLI NP
Sbjct: 386 -----------------------------------AGVAIKPFQIKNHMWIFVNCLINNP 410
Query: 434 TFDSQTKENMTLQKGSFGSTC--------------------------------------- 454
TFDSQTKENMTLQ SFGS C
Sbjct: 411 TFDSQTKENMTLQPKSFGSKCALSDKFITSITKIGVVEAVLTWAKFKADSQLEKLGPKSK 470
Query: 455 ------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLL 508
+PKLEDANDAGT S++CTLILTEGDSAK++AVSG+ +GRDKYG+FPLRGK+L
Sbjct: 471 QRKLHGIPKLEDANDAGTAKSLECTLILTEGDSAKTMAVSGIASIGRDKYGIFPLRGKML 530
Query: 509 NVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKG 568
NVREATHKQILENAEINNL+KILGLQY KKY T EDMKTLRYG++MIMTDQDQDGSHIKG
Sbjct: 531 NVREATHKQILENAEINNLIKILGLQYKKKYETREDMKTLRYGKMMIMTDQDQDGSHIKG 590
Query: 569 LIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIK 628
L+INFIHHNWP+LL+L F+EEFITPI+KATK + SF+SLPEFE+WK+ET N+HTYKIK
Sbjct: 591 LLINFIHHNWPSLLKLNFIEEFITPIVKATKGSQVKSFFSLPEFEQWKKETENFHTYKIK 650
Query: 629 YYK 631
YYK
Sbjct: 651 YYK 653
Score = 176 bits (446), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 74/115 (64%), Positives = 98/115 (85%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEP +Y+P+IPMVLVNGA+GIGTGWMTKIPN+NPREI++N++RM+ G DP PM P+YKN
Sbjct: 874 RIEPVYYVPVIPMVLVNGADGIGTGWMTKIPNYNPREIIENLQRMMEGADPKPMIPYYKN 933
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
FKG ++ CGD R+V++GEI+++ DK+EITEL +G WT YK+T L+ +LHG EK
Sbjct: 934 FKGVVESCGDFRYVISGEISVIGPDKVEITELPIGTWTQAYKETVLEPMLHGTEK 988
Score = 71.2 bits (173), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
Query: 795 IDDDSEEEEIEEVFHDNELAKPQKTGPQLERQERQAAEG-EDDEAGSQTQEEEDPDKDYD 853
I++ +++ I E+ N + P + + +E+ E E+DE + T + + ++D
Sbjct: 1104 IENKKKKDMIAELVRRNYESDPVVSWKLSQNREQVLEEAVENDEESTPTTSTMEKE-NFD 1162
Query: 854 YLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
YLLGMT WSLT E+K +LL++RD+K+ EL L+ + P DLW +DLD L
Sbjct: 1163 YLLGMTMWSLTREKKEDLLRQRDEKIAELKRLQARTPIDLWKEDLDNL 1210
>gi|328791048|ref|XP_001119985.2| PREDICTED: DNA topoisomerase 2 [Apis mellifera]
Length = 1447
Score = 833 bits (2153), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/666 (61%), Positives = 476/666 (71%), Gaps = 112/666 (16%)
Query: 12 VQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETN 71
++ N S KKKT +E IYQKKSQLEHILLRPDTYIGSVEP+TE MW+ ++E
Sbjct: 5 IENGSNDNSAKKKT------IEGIYQKKSQLEHILLRPDTYIGSVEPVTEIMWVYDKEKE 58
Query: 72 HMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVV 131
M ++EI YVPGLYKIFDEILVNA DNKQRDPKM+ IKI +N E N ISVWNNGKGIPVV
Sbjct: 59 SMTQKEIKYVPGLYKIFDEILVNAADNKQRDPKMDTIKIEINAENNIISVWNNGKGIPVV 118
Query: 132 EHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRN 191
HK+E M+VPTMI FGHLLTSSNY+DEE+KVTGGRN
Sbjct: 119 IHKEENMYVPTMI-------------------------FGHLLTSSNYDDEEEKVTGGRN 153
Query: 192 GYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDL 251
GYGAKLCNIFS +F VET+ EYKK KQ W +NM + P IK S +DFTK+ F+PDL
Sbjct: 154 GYGAKLCNIFSHRFTVETASKEYKKCLKQTWSNNMGSASEPRIKDFSGEDFTKVIFSPDL 213
Query: 252 TKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD-RQDEDG 310
+KFKM SLD D++ L++RRAYD AAST+ VKVFLNG K+PVKNF+DYV Y R+D+ G
Sbjct: 214 SKFKMQSLDDDIIALMSRRAYDIAASTRGVKVFLNGTKIPVKNFKDYVDFYIKGREDDVG 273
Query: 311 DPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKK 370
+P+KI+YEN PRWEVAIA SD+GFQQ+SFVNSIATTKGGRHVD V + IVKQ+ E +KK
Sbjct: 274 NPLKIVYENCGPRWEVAIALSDKGFQQMSFVNSIATTKGGRHVDHVTELIVKQLTETLKK 333
Query: 371 KNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLI 430
KNK G+ +KPFQ+KNH+WIFINCLI
Sbjct: 334 KNK-----------------------------------AGVTIKPFQIKNHLWIFINCLI 358
Query: 431 VNPTFDSQTKENMTLQKGSFGSTC------------------------------------ 454
NPTFDSQTKENMTLQ SFGS C
Sbjct: 359 NNPTFDSQTKENMTLQPKSFGSKCTLSEKFITSVTKIGIVEAVLTWAKFKADSQLQKLGP 418
Query: 455 ---------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRG 505
+PKLEDANDAGT S++CTLILTEGDSAK++AVSGL +GRDKYG+FPLRG
Sbjct: 419 KSKQRKLQGIPKLEDANDAGTNKSLECTLILTEGDSAKTMAVSGLAAIGRDKYGIFPLRG 478
Query: 506 KLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSH 565
K+LNVREATHKQILENAEINNL+KILGLQY KKY T ED+KTLRYG++MIMTDQDQDGSH
Sbjct: 479 KILNVREATHKQILENAEINNLIKILGLQYKKKYETREDLKTLRYGKMMIMTDQDQDGSH 538
Query: 566 IKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTY 625
IKGL+INFIHHNWP+LL+L F+EEFITPI+KATK + LSF+S+PEF +WK ET N+HTY
Sbjct: 539 IKGLLINFIHHNWPSLLKLNFVEEFITPIVKATKGNQVLSFFSMPEFNKWKSETENFHTY 598
Query: 626 KIKYYK 631
KIKYYK
Sbjct: 599 KIKYYK 604
Score = 118 bits (295), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 688 IPNHNPREIVDNIKRMIRGEDPLPMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEI 747
IPN+NPREI++N+ RM+ G DP PM P+YKNFKG I+ CGD R+++NGEI+++ DK+EI
Sbjct: 805 IPNYNPREIIENLYRMMDGADPKPMVPYYKNFKGVIESCGDFRYIINGEISVIGPDKIEI 864
Query: 748 TELQVGKWTTDYKDT-LDTLLHGAEK 772
TEL +G WT YK+T L+ +LHG +K
Sbjct: 865 TELPIGTWTQTYKETVLEPMLHGTDK 890
Score = 74.7 bits (182), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 3/73 (4%)
Query: 829 QAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKK 888
+ AE DDE S T ++ ++DYLLGMT WSLT E+K+ELL+++DDK+ EL L+ +
Sbjct: 1043 EVAENVDDETVSSTAITKE---NFDYLLGMTLWSLTKEKKDELLRQKDDKLAELKRLQAR 1099
Query: 889 APTDLWSDDLDAL 901
P LW +DLD L
Sbjct: 1100 TPISLWKEDLDNL 1112
>gi|357628633|gb|EHJ77901.1| DNA topoisomerase 2 [Danaus plexippus]
Length = 1545
Score = 832 bits (2150), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/664 (62%), Positives = 479/664 (72%), Gaps = 110/664 (16%)
Query: 14 QNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHM 73
QNG + K K ++EKIYQKKSQLEHILLRPDTYIGSVE TETMW+ ++E M
Sbjct: 16 QNGTSEAAK----GQKGAIEKIYQKKSQLEHILLRPDTYIGSVERSTETMWVYDKEKECM 71
Query: 74 ERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEH 133
+RE+TYVPGLYKI+DEILVNA DNKQRDPKM+ IKI +NQE NTISV+NNG GIPVV H
Sbjct: 72 VQRELTYVPGLYKIYDEILVNAADNKQRDPKMDVIKIDINQEQNTISVYNNGCGIPVVMH 131
Query: 134 KDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGY 193
KDEKMFVPTMI FGHLLTSSNYNDEE+KVTGGRNGY
Sbjct: 132 KDEKMFVPTMI-------------------------FGHLLTSSNYNDEEEKVTGGRNGY 166
Query: 194 GAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIK-SGSKDDFTKITFTPDLT 252
GAKLCNIFS+KF VET+ +YKK FKQ W NM+K + P++K SG DDFTK+TF+PDL
Sbjct: 167 GAKLCNIFSTKFTVETASKQYKKHFKQTWGSNMTKASEPKVKESGKDDDFTKVTFSPDLA 226
Query: 253 KFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD-RQDEDGD 311
KFKM L+ D+V L++RRAYD AAST VKV+LNGE+L + F+DY+ LY ++DE+G
Sbjct: 227 KFKMDKLEDDIVALMSRRAYDVAASTTGVKVYLNGERLKINKFKDYIDLYIKGKEDENGQ 286
Query: 312 PVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK 371
P+K++YE VN RWEVA+ SDRGFQQVSFVNSIATTKGG+HVD V D++VK ++EV+KKK
Sbjct: 287 PLKVVYEKVNDRWEVALTLSDRGFQQVSFVNSIATTKGGKHVDTVADSVVKNVLEVLKKK 346
Query: 372 NKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIV 431
NK GG+ +KPFQVK H+W+FINCLIV
Sbjct: 347 NK-----------------------------------GGVNIKPFQVKTHMWVFINCLIV 371
Query: 432 NPTFDSQTKENMTLQKGSFGSTC------------------------------------- 454
NPTFDSQTKENMTLQ SFGS C
Sbjct: 372 NPTFDSQTKENMTLQAKSFGSKCNFSEKFINAVTKSGLVESVLTWAKFKAQNELVKASGK 431
Query: 455 -------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKL 507
+PKLEDANDAGTKN+ CTLILTEGDSAK+LAVSGL VVGRD YGVFPL+GK
Sbjct: 432 KQSKLKGIPKLEDANDAGTKNAHLCTLILTEGDSAKTLAVSGLSVVGRDHYGVFPLKGKP 491
Query: 508 LNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIK 567
LNVR+A+HKQ+LEN EINNL+KI+GLQY KKY +V+D+K+LRYG++MIM DQDQDGSHIK
Sbjct: 492 LNVRDASHKQVLENVEINNLIKIVGLQYKKKYNSVDDLKSLRYGKVMIMADQDQDGSHIK 551
Query: 568 GLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKI 627
GLIINFIHHNWP LL+LPFLEEFITPI+KATK +E SFYSLPEFEEWK ET N HTY I
Sbjct: 552 GLIINFIHHNWPELLKLPFLEEFITPIVKATKKDKEFSFYSLPEFEEWKRETDNHHTYNI 611
Query: 628 KYYK 631
KYYK
Sbjct: 612 KYYK 615
Score = 160 bits (404), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/114 (62%), Positives = 93/114 (81%), Gaps = 1/114 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP Y+PI+PMVLVNGAEGIGTGW TKIPN+NPR+IV NI+RM+ GEDP+PM PWYKN
Sbjct: 848 KIEPIHYVPILPMVLVNGAEGIGTGWSTKIPNYNPRDIVANIRRMLDGEDPVPMHPWYKN 907
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F+G I+ GD ++V++GE AIL ++K+EITEL VG WT +YK+ + + G +K
Sbjct: 908 FRGTIESFGD-KYVISGEAAILPNEKIEITELPVGTWTQNYKENVLEPMLGTDK 960
Score = 68.6 bits (166), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 39/52 (75%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
K ++YLLGM+ W LT E+K+ELLK+RD K+TEL LK K P LW +DLD+
Sbjct: 1147 KKFNYLLGMSMWMLTKEKKDELLKQRDQKLTELETLKAKTPAMLWREDLDSF 1198
>gi|380013857|ref|XP_003690962.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-like [Apis
florea]
Length = 1497
Score = 831 bits (2146), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/666 (61%), Positives = 475/666 (71%), Gaps = 112/666 (16%)
Query: 12 VQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETN 71
++ N S KKKT +E IYQKKSQLEHILLRPDTYIGSVEP+TETMW+ ++E
Sbjct: 5 IENGSNDNSAKKKT------IEGIYQKKSQLEHILLRPDTYIGSVEPVTETMWIYDKEKE 58
Query: 72 HMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVV 131
M ++ I YVPGLYKIFDEILVNA DNKQRDPKM+ IKI +N E N ISVWNNGKGIPVV
Sbjct: 59 SMIQKXIKYVPGLYKIFDEILVNAADNKQRDPKMDTIKIEINAENNIISVWNNGKGIPVV 118
Query: 132 EHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRN 191
HK+E M+VPTMI FGHLLTSSNY+DEE+KVTGGRN
Sbjct: 119 IHKEENMYVPTMI-------------------------FGHLLTSSNYDDEEEKVTGGRN 153
Query: 192 GYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDL 251
GYGAKLCNIFS +F VET+ EYKK KQ W +NM + P IK S +DFTK+ F+PDL
Sbjct: 154 GYGAKLCNIFSHRFTVETASKEYKKCLKQTWSNNMGSASEPRIKDFSGEDFTKVIFSPDL 213
Query: 252 TKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD-RQDEDG 310
+KFKM SLD D++ L++RRAYD AAST+ VKVFLNG K+PVKNF+DYV Y R+D+ G
Sbjct: 214 SKFKMQSLDDDIIALMSRRAYDIAASTRGVKVFLNGTKIPVKNFKDYVDFYIKGREDDVG 273
Query: 311 DPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKK 370
+P+KI+YEN PRWEVAI SD+GFQQ+SFVNSIATTKGGRHVD V + IVKQ+ E +KK
Sbjct: 274 NPLKIVYENCGPRWEVAITLSDKGFQQMSFVNSIATTKGGRHVDHVTELIVKQLTETLKK 333
Query: 371 KNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLI 430
KNK G+ +KPFQ+KNH+WIFINCLI
Sbjct: 334 KNK-----------------------------------AGVTIKPFQIKNHLWIFINCLI 358
Query: 431 VNPTFDSQTKENMTLQKGSFGSTC------------------------------------ 454
NPTFDSQTKENMTLQ SFGS C
Sbjct: 359 NNPTFDSQTKENMTLQAKSFGSKCTLSEKFITSVTKIGIVEAVLTWAKFKADSQLQKLGP 418
Query: 455 ---------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRG 505
+PKLEDANDAGT S++CTLILTEGDSAK++AVSGL +GRDKYG+FPLRG
Sbjct: 419 KSKQRKLQGIPKLEDANDAGTNKSLECTLILTEGDSAKTMAVSGLAAIGRDKYGIFPLRG 478
Query: 506 KLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSH 565
K+LNVREATHKQILENAEINNL+KILGLQY KKY T ED+KTLRYG++MIMTDQDQDGSH
Sbjct: 479 KILNVREATHKQILENAEINNLIKILGLQYKKKYETREDLKTLRYGKMMIMTDQDQDGSH 538
Query: 566 IKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTY 625
IKGL+INFIHHNWP+LL+L F+EEFITPI+KATK + LSF+S+PEF +WK ET N+HTY
Sbjct: 539 IKGLLINFIHHNWPSLLKLNFVEEFITPIVKATKGNQVLSFFSMPEFNKWKSETENFHTY 598
Query: 626 KIKYYK 631
KIKYYK
Sbjct: 599 KIKYYK 604
Score = 172 bits (436), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/115 (64%), Positives = 96/115 (83%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP +YIP IPMVLVNGA+GIGTGWMTKIPN+NPREI++N+ RM+ G DP PM P+YKN
Sbjct: 825 KIEPVFYIPTIPMVLVNGADGIGTGWMTKIPNYNPREIIENLYRMMDGADPKPMVPYYKN 884
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
FKG I+ CGD R+++NGEI+++ DK+EITEL +G WT YK+T L+ +LHG +K
Sbjct: 885 FKGVIESCGDFRYIINGEISVIGPDKVEITELPIGTWTQTYKETVLEPMLHGTDK 939
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 3/73 (4%)
Query: 829 QAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKK 888
+ AE DDE S T ++ ++DYLLGMT WSLT E+K+ELL+++DDK+ EL L+ +
Sbjct: 1092 EVAENVDDETVSSTVITKE---NFDYLLGMTLWSLTKEKKDELLRQKDDKLAELKRLQAR 1148
Query: 889 APTDLWSDDLDAL 901
P LW +DLD L
Sbjct: 1149 TPISLWKEDLDNL 1161
>gi|195031277|ref|XP_001988321.1| GH10628 [Drosophila grimshawi]
gi|193904321|gb|EDW03188.1| GH10628 [Drosophila grimshawi]
Length = 1486
Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/649 (62%), Positives = 468/649 (72%), Gaps = 105/649 (16%)
Query: 28 NKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKI 87
N MS+E++YQKKSQLEHILLRPD+YIGSVE E MW+++ E N M +REI++VPGLYKI
Sbjct: 23 NAMSIEQMYQKKSQLEHILLRPDSYIGSVEFTKELMWVLDLEKNRMVQREISFVPGLYKI 82
Query: 88 FDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGH 147
FDEILVNA DNKQRD MN IK+ ++ E N +S+WNNG+GIPV HK+E M+VPTMI
Sbjct: 83 FDEILVNAADNKQRDKSMNTIKVDIDPEKNIVSIWNNGQGIPVTMHKEENMYVPTMI--- 139
Query: 148 LLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVV 207
FGHLLTSSNYND+E KVTGGRNGYGAKLCNIFS F V
Sbjct: 140 ----------------------FGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSDSFTV 177
Query: 208 ETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLI 267
ETS +++KSFKQ W +NM K P IK S DFT+ITF+PDLTKFKM SLDKD+V L+
Sbjct: 178 ETSTKQFRKSFKQTWGNNMGKAGDPIIKDSSGTDFTRITFSPDLTKFKMDSLDKDIVALM 237
Query: 268 TRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDED-GDPVKIIYENVNPRWEV 326
+RRAYD AASTK V VFLNG K+PVK F+DY+ L+ DED G P+K++YE RWEV
Sbjct: 238 SRRAYDVAASTKGVSVFLNGTKVPVKGFKDYIDLFVKNDDEDSGQPIKVVYEACGDRWEV 297
Query: 327 AIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNK 386
A+ PS+RGFQQVSFVNSIATTKGGRHVD VVD ++KQ+IEV+KKKNK+
Sbjct: 298 AVCPSERGFQQVSFVNSIATTKGGRHVDHVVDNVIKQLIEVLKKKNKN------------ 345
Query: 387 FNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ 446
G+++KPFQV+NH+WIF+NCLI NPTFDSQTKENMTLQ
Sbjct: 346 -----------------------GISIKPFQVRNHLWIFVNCLIENPTFDSQTKENMTLQ 382
Query: 447 KGSFGSTCV--------------------------------------------PKLEDAN 462
SFGS CV PKLEDAN
Sbjct: 383 AKSFGSKCVLSDKFIGSVSKAGIVESVLAWAKFKAQNDIAKTGGKKSSKIKGIPKLEDAN 442
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
+AGTKNSI CTLILTEGDSAKSLAVSGLGV+GR+ YGVFPLRGKLLNVREAT KQ+ ENA
Sbjct: 443 EAGTKNSIQCTLILTEGDSAKSLAVSGLGVIGRNYYGVFPLRGKLLNVREATFKQLTENA 502
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINNL KI+GLQY KKY +++D+KTLRYG++MIMTDQDQDGSHIKGL+INFIH NWP LL
Sbjct: 503 EINNLCKIIGLQYKKKYLSIDDLKTLRYGKVMIMTDQDQDGSHIKGLLINFIHTNWPELL 562
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
RLPFLEEFITPI+KATK EELSFYS+PEFEEWK +T N HTY IKYYK
Sbjct: 563 RLPFLEEFITPIVKATKKNEELSFYSMPEFEEWKMDTANHHTYNIKYYK 611
Score = 166 bits (420), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/115 (63%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEP WYIPIIPMVLVNGAEGIGTGW TKI N+NPRE+++N++RMI GE+PL M PWYKN
Sbjct: 832 RIEPLWYIPIIPMVLVNGAEGIGTGWSTKIANYNPRELINNLRRMINGEEPLLMHPWYKN 891
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYK-DTLDTLLHGAEK 772
F G +DY D R+V +G I +L D+++EITEL +G WT YK + L+ L +G EK
Sbjct: 892 FTGNMDYVNDGRYVHSGNIQMLSDNRIEITELPIGVWTQTYKENVLEALSNGTEK 946
Score = 79.0 bits (193), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 69/127 (54%), Gaps = 12/127 (9%)
Query: 838 AGSQTQEEEDPDK---------DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKK 888
+G + ++E DP+K +DYLLGM+ W LT ERKNELLK+RD K+ EL+ L KK
Sbjct: 1116 SGKKVKKELDPEKAFQKLTEVKKFDYLLGMSMWMLTEERKNELLKQRDTKLIELDNLMKK 1175
Query: 889 APTDLWSDDLDALREKDKIHPCPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSG-E 947
P LW DDLD L +K +G+ LK Q + S + R + +SG E
Sbjct: 1176 TPNHLWMDDLDNLEQKLDEVEEKERLEEQGINLK-QAKAIKSQKAAGGRGKKGKAASGNE 1234
Query: 948 DA-PPPT 953
D P PT
Sbjct: 1235 DIFPDPT 1241
>gi|345490822|ref|XP_001601580.2| PREDICTED: DNA topoisomerase 2-like [Nasonia vitripennis]
Length = 1512
Score = 823 bits (2126), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/647 (61%), Positives = 472/647 (72%), Gaps = 106/647 (16%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E +YQKK+QLEHILLRPDTYIGSVEP+TE MW+ ++E M ++EI YVPGLYKIFDE
Sbjct: 21 TIEGMYQKKTQLEHILLRPDTYIGSVEPVTELMWIYDKEKEMMIQKEIKYVPGLYKIFDE 80
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNKQRDPKM+ IKI ++ E NTISVWNNGKGIPVV HK+E M+VPTMIFGHLLT
Sbjct: 81 ILVNAADNKQRDPKMDSIKIDIDAENNTISVWNNGKGIPVVIHKEENMYVPTMIFGHLLT 140
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
SSNY+D E+KVTGGRNGYGAKLCNIFS +F VET+
Sbjct: 141 SSNYDD-------------------------AEEKVTGGRNGYGAKLCNIFSHRFTVETA 175
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
C EYKKS KQ W +NM K + +IK +DFTK+TF+PDL+KFKM LD+D+V L++RR
Sbjct: 176 CKEYKKSLKQTWGNNMGKASEAKIKEFHGEDFTKVTFSPDLSKFKMEKLDEDVVALMSRR 235
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD-RQDEDGDPVKIIYENVNPRWEVAIA 329
AYD AAS++ VKVFLNG ++PVK+F+DYV LY ++D+ G+P+KI YEN PRWEVAI
Sbjct: 236 AYDIAASSRGVKVFLNGTRVPVKSFKDYVDLYIKGKEDDTGNPLKITYENCGPRWEVAIT 295
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD+GFQQ+SFVNSIATTKGGRHVD V D +VKQ+IE +KKKNK
Sbjct: 296 LSDKGFQQMSFVNSIATTKGGRHVDHVTDMVVKQLIETLKKKNK---------------- 339
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G+ +KPFQ+KNH+W+FINCLI NPTFDSQTKENMTLQ+ S
Sbjct: 340 -------------------AGVQIKPFQIKNHLWVFINCLINNPTFDSQTKENMTLQQKS 380
Query: 450 FGSTC---------------------------------------------VPKLEDANDA 464
FGS C +PKLEDANDA
Sbjct: 381 FGSKCTLSEKFITNVTKSGIVESVLSWAKFKADSQLQKLGPKSKQRKLQGIPKLEDANDA 440
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
GT S+DCTLILTEGDSAKS+AVSG+ +GRDKYGVFPL+GK+LNVREATHKQILENAEI
Sbjct: 441 GTARSLDCTLILTEGDSAKSMAVSGIASIGRDKYGVFPLKGKILNVREATHKQILENAEI 500
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
NNL+KILGLQY KKY T +D+KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL+L
Sbjct: 501 NNLIKILGLQYKKKYETRDDLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKL 560
Query: 585 PFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
F+EEFITPI+KA K LSF+SLPEFE WK+ET N+HTYKIKYYK
Sbjct: 561 NFIEEFITPIVKARKGNHVLSFFSLPEFEAWKKETENFHTYKIKYYK 607
Score = 176 bits (446), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 75/115 (65%), Positives = 99/115 (86%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP +Y+PIIPMVLVNGA+GIGTGWMTKIPN+NPREI++N++RM+ G DP PM P+YKN
Sbjct: 828 KIEPTYYVPIIPMVLVNGADGIGTGWMTKIPNYNPREIIENLQRMMDGADPRPMSPFYKN 887
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
FKG I+ CGD R+V++GEI+I+ DK+EITEL +G WT YK+T L+ +LHG++K
Sbjct: 888 FKGTIESCGDYRYVISGEISIIGPDKVEITELPIGTWTQAYKETVLEPMLHGSDK 942
Score = 77.8 bits (190), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 52/73 (71%), Gaps = 2/73 (2%)
Query: 829 QAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKK 888
+ AE EDDEA + E +++DYLLGMT WSLT E+K+ELLK+RD+K+ EL+ L+ +
Sbjct: 1095 EVAENEDDEASTSAVVVEK--ENFDYLLGMTMWSLTKEKKDELLKQRDEKLAELHRLQAR 1152
Query: 889 APTDLWSDDLDAL 901
P LW +DLD L
Sbjct: 1153 TPLSLWKEDLDNL 1165
>gi|340729154|ref|XP_003402873.1| PREDICTED: DNA topoisomerase 2-like [Bombus terrestris]
Length = 1502
Score = 821 bits (2121), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/664 (60%), Positives = 477/664 (71%), Gaps = 111/664 (16%)
Query: 14 QNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHM 73
+NG+G + KK ++E IYQKKSQLEHILLRPDTYIGSVEP+TE MW+ ++E M
Sbjct: 6 ENGSGDNASKKK-----TIEGIYQKKSQLEHILLRPDTYIGSVEPMTEMMWIYDKEKESM 60
Query: 74 ERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEH 133
++EI YVPGLYKIFDEILVNA DNKQRDPKM+ IKI ++ + N ISVWNNGKGIPVV H
Sbjct: 61 VQKEIKYVPGLYKIFDEILVNAADNKQRDPKMDTIKIEIDPKNNVISVWNNGKGIPVVIH 120
Query: 134 KDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGY 193
K+E M+VPTMIFGHLLTSSNY+DE E+KVTGGRNGY
Sbjct: 121 KEENMYVPTMIFGHLLTSSNYDDE-------------------------EEKVTGGRNGY 155
Query: 194 GAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTK 253
GAKLCNIFS +F VET+ EYKK KQ W +NM + P IK S +DFTK+ F+PDL+K
Sbjct: 156 GAKLCNIFSHRFTVETASKEYKKCLKQTWNNNMGSASEPRIKDFSGEDFTKVIFSPDLSK 215
Query: 254 FKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD-RQDEDGDP 312
FKM SLD D+V L++RRAYD AAST+ VKV+LNG K+PVKNF+DYV Y R+DE G+P
Sbjct: 216 FKMQSLDDDIVALMSRRAYDIAASTRGVKVYLNGTKIPVKNFKDYVDFYIKGREDEGGNP 275
Query: 313 VKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKN 372
+K++YE+ RWEVA+A SD+G+QQ+SFVNSIATTKGGRH D V D IVKQ+ E +K+KN
Sbjct: 276 LKVVYESCGARWEVAVALSDKGYQQMSFVNSIATTKGGRHTDHVTDLIVKQLTETLKRKN 335
Query: 373 KDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVN 432
K G+A+KPFQ+KNH+WIF+NCLI N
Sbjct: 336 K-----------------------------------AGVAIKPFQIKNHLWIFVNCLINN 360
Query: 433 PTFDSQTKENMTLQKGSFGSTC-------------------------------------- 454
PTFDSQTKENMTLQ SFGS C
Sbjct: 361 PTFDSQTKENMTLQPKSFGSKCTLSEKFITAVTKIGIVEAVLTWAKFKADSQLQKLGPKS 420
Query: 455 -------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKL 507
+PKLEDANDAGT S++CTLILTEGDSAK++AVSGL +GRDKYG+FPLRGK+
Sbjct: 421 KQRKLQGIPKLEDANDAGTNKSLECTLILTEGDSAKTMAVSGLAAIGRDKYGIFPLRGKI 480
Query: 508 LNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIK 567
LNVREATHKQILENAEINNL+KILGLQY KKY T ED+KTLRYG++MIMTDQDQDGSHIK
Sbjct: 481 LNVREATHKQILENAEINNLIKILGLQYKKKYETREDLKTLRYGKMMIMTDQDQDGSHIK 540
Query: 568 GLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKI 627
GL+INFIHHNWP+LL+L F+EEFITPI+KA+K + LSF+S+PEF++WK ET N+HTYKI
Sbjct: 541 GLLINFIHHNWPSLLKLNFVEEFITPIVKASKGNQILSFFSMPEFQKWKSETENFHTYKI 600
Query: 628 KYYK 631
KYYK
Sbjct: 601 KYYK 604
Score = 174 bits (440), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 76/115 (66%), Positives = 96/115 (83%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP +Y+P IPMVLVNGA+GIGTGWMTKIPN+NPREI++N+ RM+ G DP PM P+YKN
Sbjct: 825 KIEPVFYVPTIPMVLVNGADGIGTGWMTKIPNYNPREIIENLYRMMDGADPKPMVPYYKN 884
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
FKG I+ CGD R+V+NGEI+++ DK+EITEL VG WT YK+T L+ +LHG EK
Sbjct: 885 FKGVIESCGDYRYVINGEISVIAPDKVEITELPVGTWTQTYKETVLEPMLHGTEK 939
Score = 70.1 bits (170), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 829 QAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKK 888
+ AE D+E S T +++DYLLGMT W LT E+K+ELL+++DDK+ EL L+ +
Sbjct: 1092 EVAENVDEE--SATSSTAIGKENFDYLLGMTLWCLTKEKKDELLRQKDDKLAELKRLQAR 1149
Query: 889 APTDLWSDDLDAL 901
P LW +DLD L
Sbjct: 1150 TPISLWKEDLDNL 1162
>gi|350401441|ref|XP_003486153.1| PREDICTED: DNA topoisomerase 2-like [Bombus impatiens]
Length = 1502
Score = 820 bits (2119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/664 (60%), Positives = 477/664 (71%), Gaps = 111/664 (16%)
Query: 14 QNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHM 73
+NG+G + KK ++E IYQKKSQLEHILLRPDTYIGSVEP+TE MW+ ++E M
Sbjct: 6 ENGSGDNVSKKK-----TIEGIYQKKSQLEHILLRPDTYIGSVEPMTEMMWIYDKEKESM 60
Query: 74 ERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEH 133
++EI YVPGLYKIFDEILVNA DNKQRDPKM+ IKI ++ + N ISVWNNGKGIPVV H
Sbjct: 61 VQKEIKYVPGLYKIFDEILVNAADNKQRDPKMDTIKIEIDPKNNVISVWNNGKGIPVVIH 120
Query: 134 KDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGY 193
K+E M+VPTMI FGHLLTSSNY+DEE+KVTGGRNGY
Sbjct: 121 KEENMYVPTMI-------------------------FGHLLTSSNYDDEEEKVTGGRNGY 155
Query: 194 GAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTK 253
GAKLCNIFS +F VET+ EYKK KQ W +NM + P IK S +DFTK+ F+PDL+K
Sbjct: 156 GAKLCNIFSHRFTVETASKEYKKCLKQTWNNNMGIASEPRIKDFSGEDFTKVIFSPDLSK 215
Query: 254 FKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD-RQDEDGDP 312
FKM SLD D+V L++RRAYD AAST+ VKV+LNG K+PVKNF+DYV Y R+DE G+P
Sbjct: 216 FKMQSLDDDIVALMSRRAYDVAASTRGVKVYLNGTKIPVKNFKDYVDFYIKGREDESGNP 275
Query: 313 VKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKN 372
+K++YEN RWEVA+A SD+G+Q +SFVNSIATTKGGRHVD V + IVKQ+ E +KKKN
Sbjct: 276 LKVVYENCGARWEVAVALSDKGYQHMSFVNSIATTKGGRHVDHVTELIVKQLTETLKKKN 335
Query: 373 KDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVN 432
K G+A+KPFQ+KNH+WIF+NCLI N
Sbjct: 336 K-----------------------------------AGVAIKPFQIKNHLWIFVNCLINN 360
Query: 433 PTFDSQTKENMTLQKGSFGSTC-------------------------------------- 454
PTFDSQTKENMTLQ SFGS C
Sbjct: 361 PTFDSQTKENMTLQPKSFGSKCTLSEKFITTVTKIGIVEAVLTWAKFKADSQLQKLGPKS 420
Query: 455 -------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKL 507
+PKLEDANDAGT S++CTLILTEGDSAK++AVSGL +GRDKYG+FPLRGK+
Sbjct: 421 KQRKLQGIPKLEDANDAGTNKSLECTLILTEGDSAKTMAVSGLAAIGRDKYGIFPLRGKI 480
Query: 508 LNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIK 567
LNVREATHKQILENAEINNL+KILGLQY KKY T ED+KTLRYG++MIMTDQDQDGSHIK
Sbjct: 481 LNVREATHKQILENAEINNLIKILGLQYKKKYETREDLKTLRYGKMMIMTDQDQDGSHIK 540
Query: 568 GLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKI 627
GL+INFIHHNWP+LL+L F+EEFITPI+KA+K + LSF+S+PEF++WK ET N+HTYKI
Sbjct: 541 GLLINFIHHNWPSLLKLNFVEEFITPIVKASKGNQILSFFSMPEFQKWKSETENFHTYKI 600
Query: 628 KYYK 631
KYYK
Sbjct: 601 KYYK 604
Score = 174 bits (440), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 76/115 (66%), Positives = 96/115 (83%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP +Y+P IPMVLVNGA+GIGTGWMTKIPN+NPREI++N+ RM+ G DP PM P+YKN
Sbjct: 825 KIEPVFYVPTIPMVLVNGADGIGTGWMTKIPNYNPREIIENLYRMMDGADPKPMVPYYKN 884
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
FKG I+ CGD R+V+NGEI+++ DK+EITEL VG WT YK+T L+ +LHG EK
Sbjct: 885 FKGVIESCGDYRYVINGEISVIAPDKVEITELPVGTWTQTYKETVLEPMLHGTEK 939
Score = 68.6 bits (166), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 39/51 (76%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
++DYLLGMT W LT E+K+ELL+++DDK+ EL L+ + P LW +DLD L
Sbjct: 1112 NFDYLLGMTLWCLTKEKKDELLRQKDDKLAELKRLQARTPISLWKEDLDNL 1162
>gi|270004896|gb|EFA01344.1| topoisomerase II [Tribolium castaneum]
Length = 1547
Score = 820 bits (2119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/647 (62%), Positives = 467/647 (72%), Gaps = 106/647 (16%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E+ YQKKSQLEHILLRPDTYIGSVE + E MW+ +R+T + ++ I+YVPGLYKIFDE
Sbjct: 32 TIEETYQKKSQLEHILLRPDTYIGSVEKVDENMWVYDRDTEMIIQKNISYVPGLYKIFDE 91
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNKQRD M+CIKI +NQ+ N ISVWNNG+GIPV HK E M+VPTMIFGHLLT
Sbjct: 92 ILVNAADNKQRDNTMDCIKIEINQDDNVISVWNNGQGIPVAMHKSENMYVPTMIFGHLLT 151
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
SSNYND +E+KVTGGRNGYGAKLCNIFS+KF VET+
Sbjct: 152 SSNYND-------------------------KEEKVTGGRNGYGAKLCNIFSTKFTVETA 186
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
EYK+ FKQVW +NM+K + P+IK +DFTKITF+PDL KFKM L+ D+V L+ RR
Sbjct: 187 TKEYKRHFKQVWGNNMTKASEPKIKDHFGEDFTKITFSPDLVKFKMEKLEDDIVSLMCRR 246
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDG-DPVKIIYENVNPRWEVAIA 329
A+D AAST+ VKVFLNG+++PVKNF+DYV +T +DEDG + K++YE N RWEVA+
Sbjct: 247 AFDVAASTRGVKVFLNGKRVPVKNFKDYVDFFTKGKDEDGNEKCKVVYEVCNERWEVAMT 306
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SDRGFQQ+SFVNSIATTKGGRHVD V + IVKQIIEV+KK+NK
Sbjct: 307 LSDRGFQQMSFVNSIATTKGGRHVDYVTEMIVKQIIEVLKKRNK---------------- 350
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
GG+A+KPFQVKNH+WIFINCLIVNPTFDSQTKENMTLQ S
Sbjct: 351 -------------------GGVAIKPFQVKNHMWIFINCLIVNPTFDSQTKENMTLQAKS 391
Query: 450 FGSTC---------------------------------------------VPKLEDANDA 464
FGS C +PKLEDAN+A
Sbjct: 392 FGSKCTLSEKFITQVVKSGIVESVLSWAKFKAQTELEKKTAGKKQSKLKGIPKLEDANEA 451
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
GTKN + CTLILTEGDSAKSLAVSGLGV+GRD YGVFPLRGKLLNVREATHKQILEN EI
Sbjct: 452 GTKNGLRCTLILTEGDSAKSLAVSGLGVIGRDYYGVFPLRGKLLNVREATHKQILENQEI 511
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
NNL+KILGLQY KKY T EDM+TLRYG++MIMTDQDQDGSHIKGL+INFIH+NWP LLR
Sbjct: 512 NNLIKILGLQYKKKYNTDEDMRTLRYGKVMIMTDQDQDGSHIKGLLINFIHYNWPELLRR 571
Query: 585 PFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FLEEFITPI+KA K E LSFYSLPEFEEWK T N TY+IKYYK
Sbjct: 572 DFLEEFITPIVKAKKRNETLSFYSLPEFEEWKSNTPNHRTYQIKYYK 618
Score = 172 bits (436), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/115 (66%), Positives = 95/115 (82%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP WYIPIIPMVLVNGA+GIGTGWMTKIPN+NPRE+V NI+ M+ E+P M PWYKN
Sbjct: 839 KIEPVWYIPIIPMVLVNGADGIGTGWMTKIPNYNPRELVKNIRAMLDQEEPTNMVPWYKN 898
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F G I CGD+R+V +GEIAI+ D+++EITEL +G WT +YK+ L+ LLHG+EK
Sbjct: 899 FIGSIVDCGDNRYVASGEIAIIGDNRVEITELPIGTWTQNYKENVLEPLLHGSEK 953
Score = 72.4 bits (176), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 40/53 (75%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
+DYLLGM+ W LT E+KNELL++RD K+ EL LKKK DLW +DLDA EK
Sbjct: 1141 FDYLLGMSMWMLTEEKKNELLRQRDIKLQELETLKKKTHCDLWREDLDAFMEK 1193
>gi|321457974|gb|EFX69050.1| hypothetical protein DAPPUDRAFT_329527 [Daphnia pulex]
Length = 1572
Score = 820 bits (2118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/665 (61%), Positives = 483/665 (72%), Gaps = 111/665 (16%)
Query: 17 NGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERR 76
NG + KK ++SVE+IYQKKSQLEHILLRPDTYIGSVEP+ + MW+ + M +R
Sbjct: 26 NGDAGKKNGANKRLSVERIYQKKSQLEHILLRPDTYIGSVEPVKDVMWVYEEDAG-MIQR 84
Query: 77 EITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDE 136
EITYVPGLYKIFDEILVNA DNK RDPKM+ IK+ ++ + N I+++NNGKGIPVVEHK+E
Sbjct: 85 EITYVPGLYKIFDEILVNAADNKVRDPKMDTIKVDIDPKENVITIYNNGKGIPVVEHKEE 144
Query: 137 KMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAK 196
KM+VP++IF GHLLTSSNYNDEE+KVTGGRNGYGAK
Sbjct: 145 KMYVPSLIF-------------------------GHLLTSSNYNDEEEKVTGGRNGYGAK 179
Query: 197 LCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKM 256
LCNIFS+ F +ET+ + +K FKQ W DNM+K +P+I + ++ DFT+ITF+PDL KFKM
Sbjct: 180 LCNIFSTSFELETASKDERKKFKQTWTDNMTKAGTPKIVNYNEADFTQITFSPDLAKFKM 239
Query: 257 TSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKL-YTDRQDEDGDPVKI 315
SLDKD V L++RRA+D AAST+ VKVFLNG++LP+KNF+DYV L ++D+DG +K
Sbjct: 240 DSLDKDTVALLSRRAFDVAASTRGVKVFLNGKRLPIKNFKDYVDLCLKGKEDDDGAQLKC 299
Query: 316 IYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDL 375
+YE V+ RWE+A+APSD+GFQQVSF NSIATTKGGRHVD V + + K + E +KKKNK
Sbjct: 300 VYEAVSERWEIAVAPSDKGFQQVSFANSIATTKGGRHVDYVTEIVSKYLQEFLKKKNK-- 357
Query: 376 GCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTF 435
G+ +KP Q+KNH+WIF+NCLIVNPTF
Sbjct: 358 ---------------------------------SGINVKPHQIKNHLWIFVNCLIVNPTF 384
Query: 436 DSQTKENMTLQKGSFGSTC----------------------------------------- 454
DSQTKENMTLQ SFGSTC
Sbjct: 385 DSQTKENMTLQAKSFGSTCKPSEKFFNALNKSGVIEGVMTWAKFKAQTELNKACSGKKQT 444
Query: 455 ----VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNV 510
VPKLEDAN+AGTK+SIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPL+GK+LNV
Sbjct: 445 KLKGVPKLEDANNAGTKHSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLKGKVLNV 504
Query: 511 REATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLI 570
REATHKQILENAEINNL+KILGLQY KKY +VED+K+LRYGRLMIMTDQDQDGSHIKGL+
Sbjct: 505 REATHKQILENAEINNLIKILGLQYKKKYESVEDLKSLRYGRLMIMTDQDQDGSHIKGLL 564
Query: 571 INFIHHNWPTLLRLPFLEEFITPIIKATK----AREELSFYSLPEFEEWKEETTNWHTYK 626
INF+HHNWP+LLRLPFLEEFITPI+KATK + + LSFYSLPEFEEWK T NW TY+
Sbjct: 565 INFLHHNWPSLLRLPFLEEFITPIVKATKGTGASAKSLSFYSLPEFEEWKTNTENWPTYR 624
Query: 627 IKYYK 631
IKYYK
Sbjct: 625 IKYYK 629
Score = 157 bits (397), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 93/115 (80%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPE+Y PIIPM+LVNG +GIGTGWMTKI N+NPRE+V N+KRM+ GE+P+PM PW+K
Sbjct: 850 RIEPEYYAPIIPMILVNGTDGIGTGWMTKILNYNPREVVANVKRMLDGEEPIPMDPWFKG 909
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
++G I+ R+ ++GE+A+L ++EITEL + WT +YK++ ++TLLHG+EK
Sbjct: 910 YRGTIERIDRHRYAISGELAVLSGTEMEITELPLRVWTQNYKESVMETLLHGSEK 964
Score = 67.4 bits (163), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 37/49 (75%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
DYDYLL M SLT E+K ELLKKRD KM E +IL KK+P DLW +DLD
Sbjct: 1136 DYDYLLDMPMRSLTYEKKEELLKKRDVKMKEYDILLKKSPADLWREDLD 1184
>gi|91079588|ref|XP_967653.1| PREDICTED: similar to topoisomerase II [Tribolium castaneum]
Length = 1552
Score = 820 bits (2118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/647 (62%), Positives = 467/647 (72%), Gaps = 106/647 (16%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E+ YQKKSQLEHILLRPDTYIGSVE + E MW+ +R+T + ++ I+YVPGLYKIFDE
Sbjct: 32 TIEETYQKKSQLEHILLRPDTYIGSVEKVDENMWVYDRDTEMIIQKNISYVPGLYKIFDE 91
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNKQRD M+CIKI +NQ+ N ISVWNNG+GIPV HK E M+VPTMIFGHLLT
Sbjct: 92 ILVNAADNKQRDNTMDCIKIEINQDDNVISVWNNGQGIPVAMHKSENMYVPTMIFGHLLT 151
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
SSNYND +E+KVTGGRNGYGAKLCNIFS+KF VET+
Sbjct: 152 SSNYND-------------------------KEEKVTGGRNGYGAKLCNIFSTKFTVETA 186
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
EYK+ FKQVW +NM+K + P+IK +DFTKITF+PDL KFKM L+ D+V L+ RR
Sbjct: 187 TKEYKRHFKQVWGNNMTKASEPKIKDHFGEDFTKITFSPDLVKFKMEKLEDDIVSLMCRR 246
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDG-DPVKIIYENVNPRWEVAIA 329
A+D AAST+ VKVFLNG+++PVKNF+DYV +T +DEDG + K++YE N RWEVA+
Sbjct: 247 AFDVAASTRGVKVFLNGKRVPVKNFKDYVDFFTKGKDEDGNEKCKVVYEVCNERWEVAMT 306
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SDRGFQQ+SFVNSIATTKGGRHVD V + IVKQIIEV+KK+NK
Sbjct: 307 LSDRGFQQMSFVNSIATTKGGRHVDYVTEMIVKQIIEVLKKRNK---------------- 350
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
GG+A+KPFQVKNH+WIFINCLIVNPTFDSQTKENMTLQ S
Sbjct: 351 -------------------GGVAIKPFQVKNHMWIFINCLIVNPTFDSQTKENMTLQAKS 391
Query: 450 FGSTC---------------------------------------------VPKLEDANDA 464
FGS C +PKLEDAN+A
Sbjct: 392 FGSKCTLSEKFITQVVKSGIVESVLSWAKFKAQTELEKKTAGKKQSKLKGIPKLEDANEA 451
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
GTKN + CTLILTEGDSAKSLAVSGLGV+GRD YGVFPLRGKLLNVREATHKQILEN EI
Sbjct: 452 GTKNGLRCTLILTEGDSAKSLAVSGLGVIGRDYYGVFPLRGKLLNVREATHKQILENQEI 511
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
NNL+KILGLQY KKY T EDM+TLRYG++MIMTDQDQDGSHIKGL+INFIH+NWP LLR
Sbjct: 512 NNLIKILGLQYKKKYNTDEDMRTLRYGKVMIMTDQDQDGSHIKGLLINFIHYNWPELLRR 571
Query: 585 PFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FLEEFITPI+KA K E LSFYSLPEFEEWK T N TY+IKYYK
Sbjct: 572 DFLEEFITPIVKAKKRNETLSFYSLPEFEEWKSNTPNHRTYQIKYYK 618
Score = 172 bits (436), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/115 (66%), Positives = 95/115 (82%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP WYIPIIPMVLVNGA+GIGTGWMTKIPN+NPRE+V NI+ M+ E+P M PWYKN
Sbjct: 839 KIEPVWYIPIIPMVLVNGADGIGTGWMTKIPNYNPRELVKNIRAMLDQEEPTNMVPWYKN 898
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F G I CGD+R+V +GEIAI+ D+++EITEL +G WT +YK+ L+ LLHG+EK
Sbjct: 899 FIGSIVDCGDNRYVASGEIAIIGDNRVEITELPIGTWTQNYKENVLEPLLHGSEK 953
Score = 72.4 bits (176), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 40/53 (75%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
+DYLLGM+ W LT E+KNELL++RD K+ EL LKKK DLW +DLDA EK
Sbjct: 1141 FDYLLGMSMWMLTEEKKNELLRQRDIKLQELETLKKKTHCDLWREDLDAFMEK 1193
>gi|112983266|ref|NP_001037009.1| DNA topoisomerase 2 [Bombyx mori]
gi|6094494|sp|O16140.1|TOP2_BOMMO RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
II; Short=TOPOII
gi|2338552|gb|AAB67168.1| topoisomerase II [Bombyx mori]
Length = 1547
Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/671 (61%), Positives = 481/671 (71%), Gaps = 115/671 (17%)
Query: 13 QQNGNG-PSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETN 71
+QNG G P+P K K ++EKIYQKKSQLEHILLRPDTYIGSVE TETMW+ ++
Sbjct: 15 KQNGTGEPAPAK---GQKGAIEKIYQKKSQLEHILLRPDTYIGSVERATETMWVYDKVKE 71
Query: 72 HMERREITYVP-----GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGK 126
M ++E+T VP GLYKI+DEILVNA DNKQRDPKM+ IKI +NQETNTISV+NNG
Sbjct: 72 CMMQKELTSVPDCSFPGLYKIYDEILVNAADNKQRDPKMDVIKIDINQETNTISVYNNGS 131
Query: 127 GIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKV 186
GIPVV HKDEKM+VPTMI FGHLLTSSNYNDEE+KV
Sbjct: 132 GIPVVMHKDEKMYVPTMI-------------------------FGHLLTSSNYNDEEEKV 166
Query: 187 TGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIK-SGSKDDFTKI 245
TGGRNGYGAKLCNIFS+KF VET+ +YKK FKQ W NM+K + P+IK SG DDFTKI
Sbjct: 167 TGGRNGYGAKLCNIFSTKFTVETASKQYKKHFKQTWGSNMTKASEPKIKDSGKDDDFTKI 226
Query: 246 TFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD- 304
F+PDL KFKM L+ D+V L++RRAYD AAS++ VKV+LNGE+L + F+DYV LY
Sbjct: 227 VFSPDLAKFKMEKLEDDIVLLMSRRAYDVAASSQGVKVYLNGERLKINKFKDYVDLYIKG 286
Query: 305 RQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQI 364
+ DE+G P+K++YE V+ RWEVA+ SD GFQQVSFVNSIATTKGG+HVD V D++VK +
Sbjct: 287 KDDENGQPLKVVYEKVSDRWEVALTISDMGFQQVSFVNSIATTKGGKHVDTVADSVVKNV 346
Query: 365 IEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWI 424
+EV+KKKNK GG+ +KP+QVK H+W+
Sbjct: 347 LEVLKKKNK-----------------------------------GGVNIKPYQVKTHMWL 371
Query: 425 FINCLIVNPTFDSQTKENMTLQKGSFGSTC------------------------------ 454
F+NCLIVNPTFDSQTKENMTLQ SFGS C
Sbjct: 372 FVNCLIVNPTFDSQTKENMTLQAKSFGSKCNLSEKFITAVTKCGLVESVLTWAKFKAQDQ 431
Query: 455 --------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGV 500
+PKLEDANDAGTKN+ CTLILTEGDSAK+LAVSGL VVGRD YGV
Sbjct: 432 LVKASGKKQSKLKGIPKLEDANDAGTKNAHLCTLILTEGDSAKTLAVSGLSVVGRDHYGV 491
Query: 501 FPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQD 560
FPL GK LNVR+A+HKQ+LEN EINNL+KILGLQY KKY +V+D+KTLRYG++MIM DQD
Sbjct: 492 FPLEGKPLNVRDASHKQVLENVEINNLIKILGLQYKKKYNSVDDLKTLRYGKVMIMADQD 551
Query: 561 QDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETT 620
QDGSHIKGLIINFIHHNWP LL+LPFLEEFITPI+KATK +E+SFYSLPEFEEWK+ET
Sbjct: 552 QDGSHIKGLIINFIHHNWPELLKLPFLEEFITPIVKATKKDKEISFYSLPEFEEWKKETE 611
Query: 621 NWHTYKIKYYK 631
N HTY IKYYK
Sbjct: 612 NHHTYNIKYYK 622
Score = 151 bits (381), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 67/114 (58%), Positives = 89/114 (78%), Gaps = 1/114 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP +Y+PIIPMVLVNG EGIGTGW TKIPN+NPR+I +N++R++ GE P M PWYKN
Sbjct: 843 KIEPVYYLPIIPMVLVNGVEGIGTGWSTKIPNYNPRDIAENLRRLLDGEKPKVMHPWYKN 902
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
FKG ++ GD ++V++GE AIL DK+EITEL VG WT +YK+ + + G +K
Sbjct: 903 FKGNVEGFGD-KYVISGEAAILPGDKIEITELPVGTWTHNYKENVLEPMLGTDK 955
Score = 65.9 bits (159), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 38/52 (73%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
K ++YLLGM+ W LT E+K+ELLK+RD K+TEL LK K LW +DLDA
Sbjct: 1144 KKFNYLLGMSMWMLTKEKKDELLKQRDQKLTELTTLKNKTAPMLWREDLDAF 1195
>gi|405962935|gb|EKC28563.1| DNA topoisomerase 2-beta [Crassostrea gigas]
Length = 1665
Score = 819 bits (2115), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/679 (58%), Positives = 474/679 (69%), Gaps = 115/679 (16%)
Query: 1 MSSDESDFD--PDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEP 58
MS D +D P + G G ++S+E+IYQKKSQLEHILLRPDTYIGSVE
Sbjct: 1 MSGDNTDIMHLPAAAEGGKGEK-------KRLSIERIYQKKSQLEHILLRPDTYIGSVES 53
Query: 59 ITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNT 118
+T+ MW+ + + M +R+IT+VPGLYKIFDEI+VNA DNKQRDP M +KI ++ E N
Sbjct: 54 VTQAMWVYDSDLEQMVQRDITFVPGLYKIFDEIIVNAADNKQRDPGMTTMKIDIDPENNK 113
Query: 119 ISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSN 178
I VWNNG+GIPV+EHK EKM+VPTMI FGHLLTSSN
Sbjct: 114 IKVWNNGRGIPVIEHKTEKMYVPTMI-------------------------FGHLLTSSN 148
Query: 179 YNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGS 238
Y+D + KVTGGRNGYGAKLCNIFS+KF+VETSC EY K+FKQ W DNM K P I
Sbjct: 149 YDDSQKKVTGGRNGYGAKLCNIFSTKFIVETSCKEYHKAFKQTWIDNMGKTKEPTITDAK 208
Query: 239 KDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDY 298
+DFT ITF PDL KFKM SL KDMVDL TRRAYD AAS++ VKVFLNG++LPVKNF+DY
Sbjct: 209 NEDFTSITFFPDLQKFKMESLTKDMVDLFTRRAYDIAASSRGVKVFLNGKRLPVKNFKDY 268
Query: 299 VKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVV 357
+ LY D+ D++G P+ +I+E N RWEVA+ S++GFQQVSFVNSIATTKGGRHVD V
Sbjct: 269 INLYVKDKTDDNGQPLPVIHEAANERWEVAVTLSEKGFQQVSFVNSIATTKGGRHVDNVT 328
Query: 358 DAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQ 417
D +V ++IEVVKKKNK GG+A+KPFQ
Sbjct: 329 DQVVTKLIEVVKKKNK-----------------------------------GGIAIKPFQ 353
Query: 418 VKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC----------------------- 454
VKNH+WIF+NCLI NPTFDSQTKE+MTLQ FGS C
Sbjct: 354 VKNHLWIFVNCLIENPTFDSQTKESMTLQAKQFGSKCTLSEKFINQVSKCGIVDNILSWM 413
Query: 455 ----------------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGV 492
+PKL+DANDAGT+NS DCTLILTEGDSAKSLAV+GLGV
Sbjct: 414 KFKAQTQLNKKLTSSKTSKMKGIPKLDDANDAGTRNSRDCTLILTEGDSAKSLAVAGLGV 473
Query: 493 VGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGR 552
VGRDKYGVFPL+GK+LNVREATHKQI++NAEINN++KI+GLQ+ +KY + +K LRYG+
Sbjct: 474 VGRDKYGVFPLKGKVLNVREATHKQIMDNAEINNIIKIMGLQFKEKYNDPDTLKNLRYGK 533
Query: 553 LMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEF 612
LMIMTDQDQDGSHIKGL+INF+HH WP LL+ +EEFITPI+K TK + ELSFYSLPEF
Sbjct: 534 LMIMTDQDQDGSHIKGLLINFMHHFWPNLLKYNVIEEFITPIVKVTKGKTELSFYSLPEF 593
Query: 613 EEWKEETTNWHTYKIKYYK 631
EEWK ET NWHTY++KYYK
Sbjct: 594 EEWKRETENWHTYRVKYYK 612
Score = 170 bits (431), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 76/115 (66%), Positives = 93/115 (80%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPEWY PIIPMVLVNGAEGIGTGW TK+PN++ REI+ NIKRM+ GEDPLPM P YKN
Sbjct: 833 KIEPEWYCPIIPMVLVNGAEGIGTGWSTKLPNYDVREIIANIKRMLDGEDPLPMVPSYKN 892
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYK-DTLDTLLHGAEK 772
FKG I+ +SRF+ +GE+AI+DD +EITEL + WT +YK D L+ +LHG EK
Sbjct: 893 FKGTIEELSESRFIASGEVAIIDDQTVEITELPIRTWTQNYKEDVLEIMLHGTEK 947
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 37/53 (69%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
D++Y+L W LT E+K+ LLK+RD+K +EL LKKK+ DLW DDL+ +
Sbjct: 1120 DFNYILNNPLWCLTKEKKDALLKQRDEKKSELEALKKKSKEDLWMDDLEEFMQ 1172
>gi|194761210|ref|XP_001962822.1| GF15632 [Drosophila ananassae]
gi|190616519|gb|EDV32043.1| GF15632 [Drosophila ananassae]
Length = 1456
Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/653 (61%), Positives = 469/653 (71%), Gaps = 105/653 (16%)
Query: 24 KTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPG 83
K MS+E++YQKKSQLEHILLRPD+YIGSVE E MW+ + E N M +RE+++VPG
Sbjct: 6 KASGGAMSIEQMYQKKSQLEHILLRPDSYIGSVEYTKELMWVYDFEKNRMVQRELSFVPG 65
Query: 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTM 143
LYKIFDEILVNA DNKQRD MN IKI ++ E N +S+WNNG+GIPV HK++KM+VPTM
Sbjct: 66 LYKIFDEILVNAADNKQRDKSMNTIKIDIDPERNVVSIWNNGQGIPVTMHKEQKMYVPTM 125
Query: 144 IFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSS 203
I FGHLLTSSNYND+E KVTGGRNGYGAKLCNIFS+
Sbjct: 126 I-------------------------FGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFST 160
Query: 204 KFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDM 263
F VET+ +YKKSFKQ W +NM+K + P IK + DFT+ITF+PDL KFKM SL++D+
Sbjct: 161 SFTVETATKQYKKSFKQTWGNNMAKASDPTIKDFNGSDFTRITFSPDLAKFKMESLEEDI 220
Query: 264 VDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDED-GDPVKIIYENVNP 322
V L++RRA+D AASTK V VFLNG KL VKNF+DY+ L+ QD+D G P+KI++E N
Sbjct: 221 VALMSRRAFDVAASTKGVAVFLNGTKLTVKNFKDYIDLHIKNQDDDAGQPIKIVHEVANE 280
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RWEVA PSDRGFQQVSFVNSIATTKGGRHVD VVD+++KQ+IEV+KKKNK
Sbjct: 281 RWEVACCPSDRGFQQVSFVNSIATTKGGRHVDHVVDSVIKQLIEVLKKKNK--------- 331
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
GG+ +KPFQV+NH+WIF+NCLI NPTFDSQTKEN
Sbjct: 332 --------------------------GGINIKPFQVRNHLWIFVNCLIENPTFDSQTKEN 365
Query: 443 MTLQKGSFGSTC--------------------------------------------VPKL 458
MTLQ SFGS C +PKL
Sbjct: 366 MTLQAKSFGSKCALSEKFISNMSKSGIVESVLAWAKFKAQNDIAKTGGRKSSKIKGIPKL 425
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
EDAN+AG KNSI+CTLILTEGDSAKSLAVSGLGV+GR+ YGVFPLRGKLLNVREA KQ+
Sbjct: 426 EDANEAGGKNSINCTLILTEGDSAKSLAVSGLGVIGRNFYGVFPLRGKLLNVREANFKQL 485
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNW 578
ENAEINNL KI+GLQY KKY T +D+KTLRYG++MIMTDQDQDGSHIKGL+INFIH NW
Sbjct: 486 SENAEINNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIMTDQDQDGSHIKGLLINFIHTNW 545
Query: 579 PTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P LLRLPFLEEFITPI+KATK EE+SFYSLPEFEEWK +T N HTY IKYYK
Sbjct: 546 PELLRLPFLEEFITPIVKATKKNEEISFYSLPEFEEWKIDTPNHHTYNIKYYK 598
Score = 164 bits (416), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 73/115 (63%), Positives = 88/115 (76%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEP WY+PIIPMVLVNGAEGIGTGW TKI NHNPREI+ N++RMI E+P+ M PWYKN
Sbjct: 819 RIEPLWYLPIIPMVLVNGAEGIGTGWATKIANHNPREIMKNLRRMINSEEPVAMHPWYKN 878
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F G ++Y D R+V G I IL D++EITEL VG WT +YK+ L+ L +G EK
Sbjct: 879 FAGRMEYVSDGRYVHTGNIQILPGDRVEITELPVGVWTQNYKENVLEALANGTEK 933
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 11/64 (17%)
Query: 838 AGSQTQEEEDPD-----------KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILK 886
A S+ ++E+D D K +DYLLGM+ W LT E+KNELLK+RD K+ EL L+
Sbjct: 1103 ASSKVKKEKDADPEKAFKKLTDVKKFDYLLGMSMWMLTEEKKNELLKQRDAKLAELENLR 1162
Query: 887 KKAP 890
KK P
Sbjct: 1163 KKTP 1166
>gi|383858079|ref|XP_003704530.1| PREDICTED: DNA topoisomerase 2-like [Megachile rotundata]
Length = 1497
Score = 816 bits (2107), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/664 (59%), Positives = 475/664 (71%), Gaps = 111/664 (16%)
Query: 14 QNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHM 73
+NG+G + +KK ++E+IYQKKSQLEHILLRPDTYIGSVEP+ E MW+ ++E M
Sbjct: 6 ENGSGENVQKKK-----TIERIYQKKSQLEHILLRPDTYIGSVEPVCELMWVFDKEKECM 60
Query: 74 ERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEH 133
++EI YVPGLYKIFDEILVNA DNKQRDPKM+ IKI ++ N ISVWNNGKGIPVV H
Sbjct: 61 IQKEIKYVPGLYKIFDEILVNAADNKQRDPKMDTIKIEIDSTNNIISVWNNGKGIPVVVH 120
Query: 134 KDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGY 193
K+E M+VPTMI FGHLLTSSNY+DEE+KVTGGRNGY
Sbjct: 121 KEENMYVPTMI-------------------------FGHLLTSSNYDDEEEKVTGGRNGY 155
Query: 194 GAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTK 253
GAKLCNIFS +F +ET+ EY+K KQ W +NM + P IK S +DFTK+ F+PDL+K
Sbjct: 156 GAKLCNIFSHRFTIETASKEYRKCLKQTWSNNMGSASEPRIKDFSGEDFTKVIFSPDLSK 215
Query: 254 FKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD-RQDEDGDP 312
FKM LD+D++ L++RRAYD AAST+ VKV+LNG ++PVK+F+DY+ Y ++D+ G+P
Sbjct: 216 FKMECLDEDIISLMSRRAYDVAASTRGVKVYLNGTRIPVKSFKDYIDFYIKGKEDDAGNP 275
Query: 313 VKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKN 372
+KI YEN PRWE+A+ SD+GFQQ+SFVNSIATTKGGRHVD V + IVKQ+ E +KKKN
Sbjct: 276 LKIAYENCGPRWEIAVTISDKGFQQMSFVNSIATTKGGRHVDHVTELIVKQLTETLKKKN 335
Query: 373 KDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVN 432
K GG+ +KPFQ+KNH+WIF+NCLI N
Sbjct: 336 K-----------------------------------GGLTIKPFQIKNHLWIFVNCLINN 360
Query: 433 PTFDSQTKENMTLQKGSFGSTC-------------------------------------- 454
PTFDSQTKENMTLQ SFGS C
Sbjct: 361 PTFDSQTKENMTLQAKSFGSKCTLSDKFITAVTKTGIVEAVLSWAKFKADSQLQKLGPKS 420
Query: 455 -------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKL 507
+PKLEDANDAGT S+DCTLILTEGDSAK++AVSGL +GRDK+G+FPLRGK+
Sbjct: 421 KQRKLQGIPKLEDANDAGTGKSLDCTLILTEGDSAKTMAVSGLASIGRDKFGIFPLRGKI 480
Query: 508 LNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIK 567
LNVREATHKQILEN EINNL+KILGLQY KKY T ED+KTLRYG+LMIMTDQDQDGSHIK
Sbjct: 481 LNVREATHKQILENPEINNLIKILGLQYKKKYETREDLKTLRYGKLMIMTDQDQDGSHIK 540
Query: 568 GLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKI 627
GL+INFIHHNWP+LL+L F+EEFITPI+KATK + LSF+S+PEF +WK ET N+HTYKI
Sbjct: 541 GLLINFIHHNWPSLLKLNFVEEFITPIVKATKGNQVLSFFSVPEFTKWKSETDNYHTYKI 600
Query: 628 KYYK 631
KYYK
Sbjct: 601 KYYK 604
Score = 163 bits (412), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/115 (61%), Positives = 95/115 (82%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP +Y+P IPMVLVNGA+GIGTGWMTKIPN+NPREI++N+ RM+ +P PM P+YKN
Sbjct: 825 KIEPVYYVPTIPMVLVNGADGIGTGWMTKIPNYNPREIIENLFRMMDDGEPKPMIPYYKN 884
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
FKG I+ CG+ R+V++GEI+++ DK+EITEL VG WT YK+T L+ +LHG +K
Sbjct: 885 FKGTIESCGEYRYVISGEISVIGPDKVEITELPVGTWTQVYKETVLEPMLHGTDK 939
Score = 73.9 bits (180), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 829 QAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKK 888
+ A+ +DEA T ++YDYLLGMT WSLT ERK+ELL++RD+K+ EL L+ +
Sbjct: 1092 EVADNVEDEAALSTAVI--AQENYDYLLGMTLWSLTKERKDELLRQRDEKLAELKRLQAR 1149
Query: 889 APTDLWSDDLDAL 901
+P LW +DLD L
Sbjct: 1150 SPVSLWKEDLDNL 1162
>gi|195119011|ref|XP_002004025.1| GI19824 [Drosophila mojavensis]
gi|193914600|gb|EDW13467.1| GI19824 [Drosophila mojavensis]
Length = 1431
Score = 814 bits (2102), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/647 (61%), Positives = 467/647 (72%), Gaps = 105/647 (16%)
Query: 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFD 89
MS+E++YQKKSQLEHILLRPD+YIGSVE E MW+ + E N M +REI++VPGLYKIFD
Sbjct: 8 MSIEQMYQKKSQLEHILLRPDSYIGSVEFTKELMWVHDAEKNRMVQREISFVPGLYKIFD 67
Query: 90 EILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
EILVNA DNKQRD MN IK+ ++ E N +S+WNNG+GIPV HK+E M+VPTMI
Sbjct: 68 EILVNAADNKQRDKSMNTIKVDIDPERNIVSIWNNGQGIPVTMHKEENMYVPTMI----- 122
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
FGHLLTSSNYND+E KVTGGRNGYGAKLCNIFS+ F VET
Sbjct: 123 --------------------FGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSNSFTVET 162
Query: 210 SCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
+ +YKKSFKQ W +NMSK P IK + D+T+ITF+PDL+KFKM SLD D+V L++R
Sbjct: 163 ATKQYKKSFKQTWGNNMSKAGDPIIKDFNGSDYTRITFSPDLSKFKMESLDSDIVALMSR 222
Query: 270 RAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDED-GDPVKIIYENVNPRWEVAI 328
RAYD AASTK V VFLNG K+PV+ F++Y+ L+ D+D G P+K++YE RWEVA
Sbjct: 223 RAYDIAASTKGVSVFLNGTKVPVRGFKEYIDLFVKNTDDDAGQPIKVVYEACGERWEVAC 282
Query: 329 APSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
PSDRGFQQVSFVNSIATTKGGRHVD VVD ++KQ+IEV+KKKNK+
Sbjct: 283 CPSDRGFQQVSFVNSIATTKGGRHVDHVVDNVIKQLIEVLKKKNKN-------------- 328
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
G+++KPFQV+NH+WIF+NCLI NPTFDSQTKENMTLQ
Sbjct: 329 ---------------------GISIKPFQVRNHLWIFVNCLIENPTFDSQTKENMTLQAK 367
Query: 449 SFGSTC--------------------------------------------VPKLEDANDA 464
SFGS C +PKLEDAN+A
Sbjct: 368 SFGSKCTFSEKFIANVAKAGIVESVLAWAKFKAQNDIAKTGGKKSHKIKGIPKLEDANEA 427
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
GTKNSI+CTLILTEGDSAKSLAVSGLGV+GR+ YGVFPLRGKLLNVREAT KQ+ ENAEI
Sbjct: 428 GTKNSINCTLILTEGDSAKSLAVSGLGVIGRNYYGVFPLRGKLLNVREATFKQLTENAEI 487
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
NNL KI+GLQY KKY T++D+KTLRYG++MIMTDQDQDGSHIKGL+INFIH NWP LLRL
Sbjct: 488 NNLCKIIGLQYKKKYLTMDDLKTLRYGKVMIMTDQDQDGSHIKGLLINFIHTNWPELLRL 547
Query: 585 PFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
PFLEEFITPI+KATK EE+SFYSLPEFEEWK +T N HTY IKYYK
Sbjct: 548 PFLEEFITPIVKATKKNEEISFYSLPEFEEWKMDTPNHHTYNIKYYK 594
Score = 163 bits (412), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/115 (60%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEP WYIPIIPMVLVNGAEGIGTGW TKI N+NPR+++ N++RMI E+PLP+ PWYKN
Sbjct: 815 RIEPLWYIPIIPMVLVNGAEGIGTGWSTKIANYNPRDMITNLRRMINNEEPLPLHPWYKN 874
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F G ++Y D R+V +G + IL D+++EITEL +G WT +YK+ L+ L +G EK
Sbjct: 875 FTGTMEYVSDGRYVHSGNVQILPDNRIEITELPIGVWTQNYKENVLEVLSNGTEK 929
Score = 74.3 bits (181), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 42/55 (76%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
K +DYLLGM+ W LT ERKNELLK+RD K+ EL+ L KK P+ LW DDLD L +K
Sbjct: 1119 KKFDYLLGMSMWMLTEERKNELLKQRDLKIAELDNLMKKTPSHLWLDDLDNLEQK 1173
>gi|195438268|ref|XP_002067059.1| GK24224 [Drosophila willistoni]
gi|194163144|gb|EDW78045.1| GK24224 [Drosophila willistoni]
Length = 1453
Score = 809 bits (2089), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/663 (60%), Positives = 466/663 (70%), Gaps = 112/663 (16%)
Query: 14 QNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHM 73
+NG+G S MS+E++YQKK+QLEHILLRPD+YIGSVE E MW+ + E N M
Sbjct: 2 ENGSGKS-------GGMSIEQMYQKKTQLEHILLRPDSYIGSVEYTKELMWVYDFENNRM 54
Query: 74 ERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEH 133
+REI++VPGLYKIFDEILVNA DNKQRD MN IKI ++ E N IS+WNNG+GIPV H
Sbjct: 55 VQREISFVPGLYKIFDEILVNAADNKQRDKSMNAIKIDIDAEKNVISIWNNGQGIPVTMH 114
Query: 134 KDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGY 193
K++KM+VPTMIFGHLLTSSNYND +E KVTGGRNGY
Sbjct: 115 KEQKMYVPTMIFGHLLTSSNYND-------------------------DEKKVTGGRNGY 149
Query: 194 GAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTK 253
GAKLCNIFS+ F +ET+ +YKKSF+Q W +NM K + IK + DFT+ITF+PDL+K
Sbjct: 150 GAKLCNIFSTSFTLETATKQYKKSFQQTWANNMGKASEANIKDFNGTDFTRITFSPDLSK 209
Query: 254 FKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDED-GDP 312
FKM LD+D+V L++RRA+D AASTK V VFLNG KL VKNF+DY+ L+ QD D G P
Sbjct: 210 FKMEKLDEDIVALMSRRAFDVAASTKGVSVFLNGNKLSVKNFKDYIDLHIKNQDSDSGQP 269
Query: 313 VKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKN 372
+K++YE RWEVA PSDRGFQQVSFVNSIAT KGGRHVD VVD ++KQ+IEV+KKKN
Sbjct: 270 IKVVYEACGERWEVACCPSDRGFQQVSFVNSIATYKGGRHVDHVVDGVIKQLIEVLKKKN 329
Query: 373 KDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVN 432
K GG+ +KPFQV+NH+WIF+NCLI N
Sbjct: 330 K-----------------------------------GGINIKPFQVRNHLWIFVNCLIEN 354
Query: 433 PTFDSQTKENMTLQKGSFGSTC-------------------------------------- 454
PTFDSQTKENMTLQ SFGS C
Sbjct: 355 PTFDSQTKENMTLQAKSFGSKCTLSEKFIANVSKSGIVESVLAWAKFKAQNDIAKTGGRK 414
Query: 455 ------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLL 508
+PKLEDAN+AG KNSI CTLILTEGDSAKSLAVSGLGV+GR+ YGVFPLRGKLL
Sbjct: 415 SGKIKGIPKLEDANEAGGKNSIQCTLILTEGDSAKSLAVSGLGVIGRNYYGVFPLRGKLL 474
Query: 509 NVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKG 568
NVREA KQ+ ENAEINNL KI+GLQY KKY T +D+KTLRYG++MIMTDQDQDGSHIKG
Sbjct: 475 NVREANFKQLTENAEINNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIMTDQDQDGSHIKG 534
Query: 569 LIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIK 628
L+INFIH NWP LLRLPFLEEFITPI+KATK EELSFYSLPEFEEWK +T N TY IK
Sbjct: 535 LLINFIHTNWPELLRLPFLEEFITPIVKATKKNEELSFYSLPEFEEWKMDTPNHATYHIK 594
Query: 629 YYK 631
YYK
Sbjct: 595 YYK 597
Score = 169 bits (427), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/127 (59%), Positives = 93/127 (73%), Gaps = 1/127 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEP WY+PIIPMVLVNGAEGIGTGW TKI NHNPREI+ N++RMI EDPLPM PWYKN
Sbjct: 818 RIEPLWYLPIIPMVLVNGAEGIGTGWSTKIANHNPREIIRNLRRMINSEDPLPMHPWYKN 877
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEKDEVHP 777
F+G I+Y D R+V G I +L D++EITEL +G WT YK+ L+ L +G +K +
Sbjct: 878 FRGRIEYVSDGRYVHTGNIQMLPGDRIEITELPLGVWTQTYKENVLEVLSNGTDKVKAVV 937
Query: 778 GPGRKSH 784
R+ H
Sbjct: 938 SEYREYH 944
Score = 58.2 bits (139), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 33/41 (80%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAP 890
K +DYLLGM+ W LT E+KNELLK+RD K++EL+ L KK P
Sbjct: 1124 KKFDYLLGMSMWMLTEEKKNELLKQRDSKLSELDNLMKKTP 1164
>gi|195397652|ref|XP_002057442.1| GJ18099 [Drosophila virilis]
gi|194141096|gb|EDW57515.1| GJ18099 [Drosophila virilis]
Length = 1445
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/647 (61%), Positives = 462/647 (71%), Gaps = 105/647 (16%)
Query: 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFD 89
MS+E++YQKKSQLEHILLRPD+YIGSVE E MW+ + E N M +REI++VPGLYKIFD
Sbjct: 9 MSIEQMYQKKSQLEHILLRPDSYIGSVEFTKELMWVHDVEKNRMVQREISFVPGLYKIFD 68
Query: 90 EILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
EILVNA DNKQRD MN IK+ ++ E N +S+WNNG+GIPV HKDE M+VPTMIFGHLL
Sbjct: 69 EILVNAADNKQRDKTMNTIKVDIDPERNLVSIWNNGQGIPVTMHKDENMYVPTMIFGHLL 128
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
TSSNYND +E KVTGGRNGYGAKLCNIFS+ F VET
Sbjct: 129 TSSNYND-------------------------DEKKVTGGRNGYGAKLCNIFSNSFTVET 163
Query: 210 SCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
+ +Y+K FKQ W +NM K P I + D+T+ITF+PDLTKFKM SLD D+V L++R
Sbjct: 164 ATRKYRKCFKQTWGNNMGKAGDPVISDFNGTDYTRITFSPDLTKFKMESLDNDIVALMSR 223
Query: 270 RAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDED-GDPVKIIYENVNPRWEVAI 328
RAYD AASTK V VFLNG K+PVK F+DY+ L+ D+D G P+K++YE RWE+A
Sbjct: 224 RAYDVAASTKGVSVFLNGTKVPVKGFKDYIDLFIKNTDDDAGQPMKVVYEACGDRWEIAC 283
Query: 329 APSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
PSDRGFQQVSFVNSIATTKGGRHVD VVD ++KQ+IEV+KKKNK+
Sbjct: 284 CPSDRGFQQVSFVNSIATTKGGRHVDHVVDNVIKQLIEVLKKKNKN-------------- 329
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
G+++KPFQV+NH+WIF+NCLI NPTFDSQTKENMTLQ
Sbjct: 330 ---------------------GISIKPFQVRNHLWIFVNCLIENPTFDSQTKENMTLQAK 368
Query: 449 SFGSTCV--------------------------------------------PKLEDANDA 464
SFGS CV PKLEDAN+A
Sbjct: 369 SFGSKCVLSEKFISNVSKAGIVESVLAWAKFKAQNDIAKTGGKKSSKIKGIPKLEDANEA 428
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
GTKNSI CTLILTEGDSAKSLAVSGLGV+GR+ YGVFPLRGKLLNVREAT KQ+ ENAEI
Sbjct: 429 GTKNSIMCTLILTEGDSAKSLAVSGLGVIGRNYYGVFPLRGKLLNVREATFKQLTENAEI 488
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
NNL KI+GLQY KKY T +D+KTLRYG++MIMTDQDQDGSHIKGL+INFIH NWP LLRL
Sbjct: 489 NNLCKIIGLQYKKKYLTTDDLKTLRYGKVMIMTDQDQDGSHIKGLLINFIHTNWPELLRL 548
Query: 585 PFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
PFLEEFITPI+KA+K EE+SFYSLPEFEEWK +T N HTY IKYYK
Sbjct: 549 PFLEEFITPIVKASKKNEEISFYSLPEFEEWKMDTPNHHTYNIKYYK 595
Score = 166 bits (420), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/115 (63%), Positives = 92/115 (80%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEP WYIPIIPMVLVNGAEGIGTGW TKI N+NPRE++ N++RMI GE+ LP+ PWYKN
Sbjct: 816 RIEPIWYIPIIPMVLVNGAEGIGTGWSTKIANYNPRELISNLRRMINGEELLPLHPWYKN 875
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYK-DTLDTLLHGAEK 772
F+G +DY D R+V +G I +L D+++EITEL VG WT +YK + L+ L +G EK
Sbjct: 876 FQGSMDYVSDGRYVHSGNIQLLPDNRIEITELPVGVWTQNYKENVLEVLSNGTEK 930
Score = 74.7 bits (182), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 47/74 (63%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHP 909
K +DYLLGM+ W LT ERKNELLK+RD K+ EL+ L KK PT LW DDLD L K
Sbjct: 1123 KKFDYLLGMSMWMLTEERKNELLKQRDLKLAELDNLIKKMPTHLWMDDLDNLEAKLNEVE 1182
Query: 910 CPGGNRTRGLALKR 923
+G+ LK+
Sbjct: 1183 EKERLEEQGINLKQ 1196
>gi|348535612|ref|XP_003455293.1| PREDICTED: DNA topoisomerase 2-beta-like [Oreochromis niloticus]
Length = 1603
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/665 (59%), Positives = 476/665 (71%), Gaps = 109/665 (16%)
Query: 15 NGNGPSPKKKTP--ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNH 72
NG G + K + +K+SVE++YQKK+QLEHILLRPDTYIGSVEPIT+ MW+ + +
Sbjct: 18 NGRGDAGKMEGAKKGSKLSVERVYQKKTQLEHILLRPDTYIGSVEPITQQMWVFDEDIG- 76
Query: 73 MERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVE 132
M +REITYVPGLYKIFDEILVNA DNKQRD M IKIT++ E+NTIS+WNNGKGIPVVE
Sbjct: 77 MNQREITYVPGLYKIFDEILVNAADNKQRDKNMTAIKITIDPESNTISIWNNGKGIPVVE 136
Query: 133 HKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNG 192
HKDEKM+VP +IF GHLLTSSNY+DEE KVTGGRNG
Sbjct: 137 HKDEKMYVPALIF-------------------------GHLLTSSNYDDEEKKVTGGRNG 171
Query: 193 YGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLT 252
YGAKLCNIFS+KF VET+C EY+ SFKQ W++NM+K + P+IK DDFT +TF PDL+
Sbjct: 172 YGAKLCNIFSTKFTVETACKEYRHSFKQTWQNNMTKTSEPKIKFFDGDDFTSVTFQPDLS 231
Query: 253 KFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGD 311
KFKM LDKD+V L+TRRAYD A S + VKV LNG+KLPV F+ YV LY D+ DE G
Sbjct: 232 KFKMEKLDKDIVALLTRRAYDVAGSCRGVKVSLNGKKLPVNGFRSYVDLYVKDKLDETGV 291
Query: 312 PVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK 371
+K+++E VN RWEV + S++GFQQ+SFVNSIATTKGGRH+D VVD IV ++IEVVKKK
Sbjct: 292 ALKVVHETVNDRWEVCLTMSEKGFQQISFVNSIATTKGGRHIDYVVDQIVAKLIEVVKKK 351
Query: 372 NKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIV 431
NK G+++KPFQVKNHIW+F+N LI
Sbjct: 352 NK-----------------------------------AGVSVKPFQVKNHIWVFVNALIE 376
Query: 432 NPTFDSQTKENMTLQKGSFGSTC------------------------------------- 454
NP+FDSQTKENMTLQ SFGS C
Sbjct: 377 NPSFDSQTKENMTLQTKSFGSKCLLSDKFIRAATNCGIVESILNWVKFKAQTQLNKKCSS 436
Query: 455 --------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGK 506
+PKL+DANDAG K+S +CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK
Sbjct: 437 VKHSKIKGIPKLDDANDAGGKHSSECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGK 496
Query: 507 LLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHI 566
+LNVREATHKQI+ENAEINN++KI+GLQY K Y E ++TLRYG++MIMTDQDQDGSHI
Sbjct: 497 ILNVREATHKQIMENAEINNIIKIVGLQYKKSYDDPESLRTLRYGKIMIMTDQDQDGSHI 556
Query: 567 KGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYK 626
KGL+INF HHNWP+LL+ FLEEFITPI+KATK ++EL+FYS+PEF+EWK+ T N+ T+
Sbjct: 557 KGLLINFFHHNWPSLLKHTFLEEFITPIVKATKNKQELAFYSIPEFDEWKKHTENYKTWH 616
Query: 627 IKYYK 631
IKYYK
Sbjct: 617 IKYYK 621
Score = 157 bits (397), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 92/115 (80%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
++EPEWYIPIIPMVLVNGAEGIGTGW KIPN++PREIV+NI RM+ +DPLPM P YKN
Sbjct: 842 KVEPEWYIPIIPMVLVNGAEGIGTGWACKIPNYDPREIVNNINRMLNHQDPLPMLPSYKN 901
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
FKG I G ++++V+GE++++D + +EITEL V WT YK++ L+ +L G +K
Sbjct: 902 FKGVIHELGQNQYLVSGEVSVIDKNTIEITELPVRTWTQAYKESVLEPMLQGTDK 956
Score = 64.7 bits (156), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 4/139 (2%)
Query: 819 TGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDK 878
T Q + QE +G + ++ + P+ ++Y+L M W LT E+ +ELLK+RD K
Sbjct: 1098 TKAQEKSQEEDYKDGNESDSSVDSGSTSGPN--FNYILNMPLWCLTKEKVDELLKQRDQK 1155
Query: 879 MTELNILKKKAPTDLWSDDLDA-LREKDKIHPCPGGNRTRGLALK-RQTRYQPSNRVLTS 936
ELN L+KK+P DLW +DL + E D + ++ G A+K + + +
Sbjct: 1156 RGELNDLQKKSPEDLWKEDLTVFIEELDNVEAQEREEQSLGKAIKLVKGKVGKPKVKKMN 1215
Query: 937 RDEPMVVSSGEDAPPPTKA 955
+E M G PPT+A
Sbjct: 1216 LEETMPSPFGRRVEPPTQA 1234
>gi|291234700|ref|XP_002737286.1| PREDICTED: DNA topoisomerase II, beta isozyme-like [Saccoglossus
kowalevskii]
Length = 1649
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/652 (60%), Positives = 470/652 (72%), Gaps = 109/652 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNH---MERREITYVPGLY 85
++SVE+IYQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + + REIT+VPGLY
Sbjct: 38 RLSVERIYQKKTQLEHILLRPDTYIGSVEPLTQNMWVFDNDIGDNGGLCYREITFVPGLY 97
Query: 86 KIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIF 145
KIFDEILVNA DNKQRD KM+CIKIT++ + N ISVWNNGKGIPVVEH+ EK+FVPT+I
Sbjct: 98 KIFDEILVNAADNKQRDAKMDCIKITIDPDNNQISVWNNGKGIPVVEHQTEKVFVPTLI- 156
Query: 146 GHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF 205
FGHLLTSSNYND+E KVTGGRNGYGAKLCNIFSSKF
Sbjct: 157 ------------------------FGHLLTSSNYNDDERKVTGGRNGYGAKLCNIFSSKF 192
Query: 206 VVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVD 265
V T+ EY K FKQVWK+NM K + P IKS DFT+++F PDL+KFKM LDKD V
Sbjct: 193 TVTTASMEYHKQFKQVWKNNMDKASEPAIKSFDGKDFTEVSFQPDLSKFKMEKLDKDTVA 252
Query: 266 LITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRW 324
L+TRRAYD A K VKV+LNG++LPVK+F+DYV LY D+ DE+ P+K+++E N RW
Sbjct: 253 LLTRRAYDIAGINKGVKVYLNGKRLPVKSFKDYVDLYVKDKTDENDQPLKVVHEICNERW 312
Query: 325 EVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFG 384
EV I S++GF QVSFVNSIATTKGGRHVD VVD IV+++I+VVKKKNK
Sbjct: 313 EVCITLSEKGFNQVSFVNSIATTKGGRHVDYVVDRIVEKVIDVVKKKNK----------- 361
Query: 385 NKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT 444
GG+ ++PFQ+KNHIW+F+NCL+ NPTFDSQTKENMT
Sbjct: 362 ------------------------GGINIRPFQIKNHIWVFVNCLVENPTFDSQTKENMT 397
Query: 445 LQKGSFGSTC---------------------------------------------VPKLE 459
LQ FGS C +PKL+
Sbjct: 398 LQVKKFGSVCKLSDKFIKQTLTCGIVESIMNWVKFKAQNLLNKKCSAAKHSKLRGIPKLD 457
Query: 460 DANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQIL 519
DANDAGTKNS DCTLILTEGDSAK+LAVSGL +VGRDKYGVFPLRGKLLNVREATHKQI+
Sbjct: 458 DANDAGTKNSKDCTLILTEGDSAKTLAVSGLSIVGRDKYGVFPLRGKLLNVREATHKQIM 517
Query: 520 ENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWP 579
ENAEINN++KI+GLQY K Y + + +KTLRYG+LMIMTDQDQDGSHIKGL++NFIHHNWP
Sbjct: 518 ENAEINNVIKIMGLQYKKSYDSDDALKTLRYGKLMIMTDQDQDGSHIKGLLVNFIHHNWP 577
Query: 580 TLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+LL+ FLEEFITPI+KATK +E +FYSLPEFEEWK+ET N HT+++KYYK
Sbjct: 578 SLLKHKFLEEFITPIVKATKGKEVFTFYSLPEFEEWKKETPNHHTWRVKYYK 629
Score = 154 bits (388), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 106/155 (68%), Gaps = 5/155 (3%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPEWY PIIPMVLVNGAEGIGTGW TKI N++ REIV NI+ MI GE+PLPM P YK
Sbjct: 850 RIEPEWYCPIIPMVLVNGAEGIGTGWSTKIANYDVREIVANIRLMIDGEEPLPMLPSYKG 909
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEKDEVHP 777
+KG I+ +R+ +GEIAI+D++ LEITEL V WT YK+T L+ +LHG+EK +
Sbjct: 910 YKGAIEEIEANRYACSGEIAIVDNNTLEITELPVRVWTQVYKETVLEPMLHGSEKVQPLI 969
Query: 778 GPGRKSHPRPIAPKSYKIDDD----SEEEEIEEVF 808
++ H K+ D+ +EE+ + +VF
Sbjct: 970 TDYKEYHTDTTVKIVVKMSDEKLLKAEEQGLHKVF 1004
Score = 75.1 bits (183), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 824 ERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELN 883
E Q R E ED + S D++YLLGM WSL+ ERK+ELLK RD K EL
Sbjct: 1107 ESQNRNN-EDEDSDTDSMYSSATGGGPDFNYLLGMALWSLSKERKDELLKNRDTKAAELE 1165
Query: 884 ILKKKAPTDLWSDDLDALREK 904
+L+ K P+DLW +DLDA K
Sbjct: 1166 VLRDKTPSDLWIEDLDAFSAK 1186
>gi|195345101|ref|XP_002039114.1| Top2 [Drosophila sechellia]
gi|194134244|gb|EDW55760.1| Top2 [Drosophila sechellia]
Length = 1448
Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/647 (61%), Positives = 463/647 (71%), Gaps = 105/647 (16%)
Query: 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFD 89
MS+E++YQKKSQLEHILLRPD+YIGSVE E MW+ + N M ++EI++VPGLYKIFD
Sbjct: 8 MSIEQMYQKKSQLEHILLRPDSYIGSVEFTKELMWVYDNSQNRMVQKEISFVPGLYKIFD 67
Query: 90 EILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
EILVNA DNKQRD MN IKI ++ E N +SVWNNG+GIPV HK++KM+VPTMI
Sbjct: 68 EILVNAADNKQRDKSMNTIKIDIDPERNIVSVWNNGQGIPVTMHKEQKMYVPTMI----- 122
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
FGHLLTSSNYND+E KVTGGRNGYGAKLCNIFS+ F VET
Sbjct: 123 --------------------FGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTSFTVET 162
Query: 210 SCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
+ EY+KSFKQ W +NM K + +IK + D+T+ITF+PDL KFKM LD+D+V L++R
Sbjct: 163 ATKEYRKSFKQTWGNNMGKASDVQIKDFNGTDYTRITFSPDLAKFKMDRLDEDIVALMSR 222
Query: 270 RAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDED-GDPVKIIYENVNPRWEVAI 328
RAYD AAS+K V VFLNG KL V+NF+DY+ L+ DED G P+KI++E N RWEVA
Sbjct: 223 RAYDVAASSKGVSVFLNGNKLAVRNFKDYIDLHIKSTDEDSGPPIKIVHEVANERWEVAC 282
Query: 329 APSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
PSDRGFQQVSFVNSIAT KGGRHVD VVD ++KQ++EV+KKKNK
Sbjct: 283 CPSDRGFQQVSFVNSIATYKGGRHVDHVVDNLIKQLLEVLKKKNK--------------- 327
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
GG+ +KPFQV+NH+W+F+NCLI NPTFDSQTKENMTLQ+
Sbjct: 328 --------------------GGINIKPFQVRNHLWVFVNCLIENPTFDSQTKENMTLQQK 367
Query: 449 SFGSTC--------------------------------------------VPKLEDANDA 464
FGS C +PKLEDAN+A
Sbjct: 368 GFGSKCTLSDKFINNMSKSGIVESVLAWAKFKAQNDIAKTGGRKSSKIKGIPKLEDANEA 427
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
G KNSI+CTLILTEGDSAKSLAVSGLGV+GRD YGVFPLRGKLLNVREA +KQ+ ENAE+
Sbjct: 428 GGKNSINCTLILTEGDSAKSLAVSGLGVIGRDHYGVFPLRGKLLNVREANYKQLSENAEV 487
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
NNL KI+GLQY KKY T +D+KTLRYG++MIMTDQDQDGSHIKGL+INFIH NWP LLRL
Sbjct: 488 NNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIMTDQDQDGSHIKGLLINFIHTNWPELLRL 547
Query: 585 PFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
PFLEEFITPI+KATK EELSFYSLPEFEEWK +T N HTY IKYYK
Sbjct: 548 PFLEEFITPIVKATKKNEELSFYSLPEFEEWKNDTANHHTYNIKYYK 594
Score = 157 bits (397), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP WY+PIIPMVLVNGAEGIGTGW TKI N+NPREI++N+++MI G++P+ M PWYKN
Sbjct: 815 KIEPLWYLPIIPMVLVNGAEGIGTGWSTKISNYNPREIMNNLRKMINGQEPVVMHPWYKN 874
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F G I+Y D R++ G + IL ++LEI+EL VG WT +YK+ L+ L +G EK
Sbjct: 875 FLGRIEYVSDGRYIQTGNLQILHGNRLEISELPVGVWTQNYKENVLEALSNGTEK 929
Score = 77.0 bits (188), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 50/74 (67%), Gaps = 9/74 (12%)
Query: 840 SQTQEEEDPDK---------DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAP 890
++ ++E DP+K +DYLLGM+ W LT ERKNELLK+RD K++EL L+KK P
Sbjct: 1102 AKKEKEADPEKAFKKLTDVKKFDYLLGMSMWMLTEERKNELLKQRDTKLSELENLRKKTP 1161
Query: 891 TDLWSDDLDALREK 904
LW DDLDAL K
Sbjct: 1162 EMLWLDDLDALESK 1175
>gi|194879545|ref|XP_001974253.1| GG21630 [Drosophila erecta]
gi|190657440|gb|EDV54653.1| GG21630 [Drosophila erecta]
Length = 1446
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/647 (61%), Positives = 463/647 (71%), Gaps = 105/647 (16%)
Query: 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFD 89
MS+E++YQKKSQLEHILLRPD+YIGSVE E MW+ + N M +REI++VPGLYKIFD
Sbjct: 8 MSIEQMYQKKSQLEHILLRPDSYIGSVEFTKELMWVYDNSQNRMVQREISFVPGLYKIFD 67
Query: 90 EILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
EILVNA DNKQRD MN IKI ++ E N +SVWNNG+GIPV HK++KM+VPTMI
Sbjct: 68 EILVNAADNKQRDKSMNTIKIDIDPERNIVSVWNNGQGIPVTMHKEQKMYVPTMI----- 122
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
FGHLLTSSNYND+E KVTGGRNGYGAKLCNIFS+ F VET
Sbjct: 123 --------------------FGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTSFTVET 162
Query: 210 SCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
+ EYKKSFKQ W +NM K + +IK + D+T+ITF+PDL KFKM SLD+D+V L++R
Sbjct: 163 ATREYKKSFKQTWGNNMGKASDVQIKDFNGTDYTRITFSPDLAKFKMESLDEDIVALMSR 222
Query: 270 RAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDED-GDPVKIIYENVNPRWEVAI 328
RAYD AAS+K V VFLNG KL V+NF+DY+ L+ D+D G P+KI++E N RWEVA
Sbjct: 223 RAYDVAASSKGVSVFLNGNKLAVRNFKDYIDLHVKSTDDDSGPPIKIVHEVANERWEVAC 282
Query: 329 APSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
PSDRGFQQVSFVNSIAT KGGRHVD VVD ++KQ++EV+KKKNK
Sbjct: 283 CPSDRGFQQVSFVNSIATYKGGRHVDHVVDNLIKQLLEVLKKKNK--------------- 327
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
GG+ +KPFQV+NH+W+F+NCLI NPTFDSQTKENMTLQ+
Sbjct: 328 --------------------GGINIKPFQVRNHLWVFVNCLIENPTFDSQTKENMTLQQK 367
Query: 449 SFGSTC--------------------------------------------VPKLEDANDA 464
FGS C +PKLEDAN+A
Sbjct: 368 GFGSKCTLSEKFINNMSKSGIVESVLAWAKFKAQNDIAKTGGRKSSKIKGIPKLEDANEA 427
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
G KNSI+CTLILTEGDSAKSLAVSGLGV+GR+ YGVFPLRGKLLNVREA KQ+ ENAEI
Sbjct: 428 GGKNSINCTLILTEGDSAKSLAVSGLGVIGRNFYGVFPLRGKLLNVREANFKQLSENAEI 487
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
NNL KI+GLQY KKY T +D+KTLRYG++MIMTDQDQDGSHIKGL+INFIH NWP LLRL
Sbjct: 488 NNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIMTDQDQDGSHIKGLLINFIHTNWPELLRL 547
Query: 585 PFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
PFLEEFITPI+KATK EELSFYSLPEFEEWK +T N HTY IKYYK
Sbjct: 548 PFLEEFITPIVKATKKNEELSFYSLPEFEEWKNDTANHHTYNIKYYK 594
Score = 159 bits (403), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/115 (61%), Positives = 88/115 (76%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP+WY+PIIPMVLVNGAEGIGTGW TKI NHNPREI+ N+++MI GE+P M PWYKN
Sbjct: 815 KIEPQWYLPIIPMVLVNGAEGIGTGWSTKISNHNPREIMSNLRKMINGEEPKVMHPWYKN 874
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F G ++Y D R+V G I IL ++ EITEL VG WT +YK+ L+ L +G EK
Sbjct: 875 FTGRMEYVSDGRYVQTGNIQILPGNRAEITELPVGVWTQNYKENVLEPLANGTEK 929
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 11/64 (17%)
Query: 838 AGSQTQEEEDPDKD-----------YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILK 886
A S+ ++E+D D D +DYLLGM+ W LT E+KNELLK+RD K++EL L+
Sbjct: 1098 ASSKVKKEKDVDPDKAFKKLTDVKKFDYLLGMSMWMLTEEKKNELLKQRDAKLSELENLR 1157
Query: 887 KKAP 890
KK P
Sbjct: 1158 KKTP 1161
>gi|390342282|ref|XP_783546.2| PREDICTED: DNA topoisomerase 2-beta [Strongylocentrotus purpuratus]
Length = 1673
Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/649 (62%), Positives = 460/649 (70%), Gaps = 109/649 (16%)
Query: 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFD 89
+SVE+IYQKKSQLEHIL+RPDTYIGS EP TETMW+++ M RE+TYVPGLYKIFD
Sbjct: 59 LSVERIYQKKSQLEHILIRPDTYIGSTEPFTETMWVVDDGV--MVNREVTYVPGLYKIFD 116
Query: 90 EILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
EILVNA DNKQRDP MNCIKIT+++E N IS+WNNGKGIPVVEHK EKMFVP MIF
Sbjct: 117 EILVNAADNKQRDPTMNCIKITLDKEQNLISIWNNGKGIPVVEHKGEKMFVPEMIF---- 172
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
GHLLTSSNYND+E KVTGGRNGYGAKLCNIFS+KF V T
Sbjct: 173 ---------------------GHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTKFTVVT 211
Query: 210 SCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
+C EYKK FKQ W +NMSK TSP+I DFT++TF PDL+KFKMT LD D + L+TR
Sbjct: 212 ACKEYKKKFKQSWHNNMSKTTSPKITPFEGTDFTEVTFNPDLSKFKMTELDADTMALLTR 271
Query: 270 RAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAI 328
RAYD A +K VKVFLNG++LPV F+ YV LY D+ DE G+ +K+++E VNPRWEV +
Sbjct: 272 RAYDLAGGSKGVKVFLNGKRLPVNGFKSYVDLYIKDKVDETGNRLKLVHEQVNPRWEVCV 331
Query: 329 APSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
S++GFQQVSFVNSIATTKGGRHVD V D IV QII+ VKKKNK
Sbjct: 332 CLSEKGFQQVSFVNSIATTKGGRHVDYVSDQIVNQIIQTVKKKNK--------------- 376
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
G+ +KPFQV++HIW+F+NC I NPTFDSQTKENMTLQ
Sbjct: 377 --------------------AGINIKPFQVRSHIWVFVNCAIENPTFDSQTKENMTLQIK 416
Query: 449 SFGSTC---------------------------------------------VPKLEDAND 463
FGSTC VPKL+DAN
Sbjct: 417 KFGSTCKLSEKFVKAAANCGIVENILSWMKFKAQSQLDKKCHTSKHSKIKGVPKLDDANS 476
Query: 464 AGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAE 523
AG KNS CTLILTEGDSAKSLAVSGLGVVGRD YGVFPLRGKLLNVREA+HKQI+ENAE
Sbjct: 477 AGGKNSSVCTLILTEGDSAKSLAVSGLGVVGRDHYGVFPLRGKLLNVREASHKQIMENAE 536
Query: 524 INNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR 583
INN++KILGLQY KY + E +K+LRYGRLMIMTDQDQDGSHIKGL+INFIH NWP LL+
Sbjct: 537 INNIIKILGLQYKNKYDSPESLKSLRYGRLMIMTDQDQDGSHIKGLLINFIHSNWPHLLQ 596
Query: 584 LPFLEEFITPIIKATKARE-ELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FLEEFITPI+KA+KA E L FYSLPEFE+WK+ T NW T+K+KYYK
Sbjct: 597 RNFLEEFITPIVKASKANETTLPFYSLPEFEKWKDATDNWKTWKVKYYK 645
Score = 146 bits (368), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 109/155 (70%), Gaps = 5/155 (3%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPE+Y PIIPMVL+NG+EGIGTGW T+I N++ RE+V N++R++ G++P+PM P YKN
Sbjct: 866 RIEPEFYAPIIPMVLINGSEGIGTGWSTRICNYDIREVVANVRRLLAGDEPVPMLPSYKN 925
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEKDEVHP 777
FKG I+ +RF VNGEI+++DD+ +EITEL + WT +YK++ L+ +++G +K +
Sbjct: 926 FKGTIEEFEPNRFAVNGEISVVDDNSVEITELPIRVWTQNYKESVLENMVYGTDKVKPSI 985
Query: 778 GPGRKSHPRPIAPKSYKIDDD----SEEEEIEEVF 808
++ H K+++D EEE + ++F
Sbjct: 986 SDYKEYHTDTTVKFVVKMNEDRLLRGEEEGLHKMF 1020
Score = 78.2 bits (191), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 65/99 (65%), Gaps = 4/99 (4%)
Query: 824 ERQERQAAEGED--DEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTE 881
E Q++ E ED D+A S + E DY+YLLGM+ WSLT E+KN+LLK+RD+K E
Sbjct: 1124 EAQQKSVEEEEDSFDDAASDSSEA-GSGPDYNYLLGMSLWSLTKEKKNDLLKQRDEKAAE 1182
Query: 882 LNILKKKAPTDLWSDDLDA-LREKDKIHPCPGGNRTRGL 919
L++L++K + LW+DDL+A + E D++ + + GL
Sbjct: 1183 LSLLRRKTASMLWTDDLNAFMAELDRVEAQEREDESSGL 1221
Score = 46.6 bits (109), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 5/67 (7%)
Query: 1046 CRLDEVERKEKEEENSNITKIKSKL-KEKGSKKRNP----LSSLDDTMPSAAGRRVEPKY 1100
LD VE +E+E+E+S +T + SK+ K KGSK P L + ++T PS GRRV P+
Sbjct: 1204 AELDRVEAQEREDESSGLTGVSSKMTKGKGSKITKPRKQKLLTREETKPSPYGRRVAPRI 1263
Query: 1101 EELLIKA 1107
+ L+ KA
Sbjct: 1264 DNLIKKA 1270
>gi|195164670|ref|XP_002023169.1| GL21103 [Drosophila persimilis]
gi|194105254|gb|EDW27297.1| GL21103 [Drosophila persimilis]
Length = 1451
Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/650 (61%), Positives = 461/650 (70%), Gaps = 105/650 (16%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYK 86
N +S+E++YQKKSQLEHILLRPD+YIGSVE E MW+ + E M +REI +VPGLYK
Sbjct: 4 GNALSIEQMYQKKSQLEHILLRPDSYIGSVEFTKELMWVYDFEKARMIQREIAFVPGLYK 63
Query: 87 IFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFG 146
IFDEILVNA DNKQRD MN IKI ++ E N +S+WNNG+GIPV HK++KM+VPTMI
Sbjct: 64 IFDEILVNAADNKQRDKSMNTIKIDIDAEKNVVSIWNNGQGIPVTMHKEQKMYVPTMI-- 121
Query: 147 HLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFV 206
FGHLLTSSNYND+E KVTGGRNGYGAKLCNIFS+ F
Sbjct: 122 -----------------------FGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTSFT 158
Query: 207 VETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDL 266
VET+ +YKK+FKQ W NMSK + IK + DFT+ITF+PDL KFKM LD+D+V L
Sbjct: 159 VETATKQYKKNFKQTWGSNMSKASDVTIKDFNGTDFTRITFSPDLAKFKMERLDEDIVAL 218
Query: 267 ITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDED-GDPVKIIYENVNPRWE 325
++RRA+D AAS+K V VFLNG KL VKNF+DY+ L+ QD+D G P+KI++E N RWE
Sbjct: 219 MSRRAFDVAASSKGVSVFLNGNKLTVKNFKDYIDLHVKNQDDDCGQPIKIVHEVANERWE 278
Query: 326 VAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
VA PSDRGFQQVSFVNSIATTKGGRHVD VVD ++KQ+IEV+KKKNK
Sbjct: 279 VACCPSDRGFQQVSFVNSIATTKGGRHVDHVVDNVIKQLIEVLKKKNK------------ 326
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTL 445
GG+ +KPFQV+NH+WIF+NCLI NPTFDSQTKENMTL
Sbjct: 327 -----------------------GGINIKPFQVRNHLWIFVNCLIENPTFDSQTKENMTL 363
Query: 446 QKGSFGSTC--------------------------------------------VPKLEDA 461
Q FGS C +PKLEDA
Sbjct: 364 QAKGFGSKCTLSEKFISSLSKSGIVESVLAWAKFKAQNDIAKTGGRKSSKIKGIPKLEDA 423
Query: 462 NDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILEN 521
N+AG KNSI+CTLILTEGDSAKSLAVSGLGV+GR+ YGVFPLRGKLLNVREA KQ+ EN
Sbjct: 424 NEAGGKNSINCTLILTEGDSAKSLAVSGLGVIGRNYYGVFPLRGKLLNVREANFKQLSEN 483
Query: 522 AEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTL 581
AEINNL KI+GLQY KKY T +D+KTLRYG++MIMTDQDQDGSHIKGL+INF+H NWP L
Sbjct: 484 AEINNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIMTDQDQDGSHIKGLLINFVHTNWPEL 543
Query: 582 LRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
LRLPFLEEFITPI+K TK EELSFYSLPEFEEWK +T N HTY +KYYK
Sbjct: 544 LRLPFLEEFITPIVKVTKKNEELSFYSLPEFEEWKMDTPNHHTYNVKYYK 593
Score = 161 bits (407), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 72/115 (62%), Positives = 88/115 (76%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEP WY+PIIPMVLVNGAEGIGTGW TKI N+NPREI N++RMI E+PLPM PWYKN
Sbjct: 814 RIEPLWYLPIIPMVLVNGAEGIGTGWSTKIANYNPREITRNLRRMINEEEPLPMHPWYKN 873
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F G ++Y D R+V G I IL +++EITEL +G WT +YK+ L+ L +G EK
Sbjct: 874 FTGRMEYISDGRYVHTGNIQILPGERVEITELPIGVWTQNYKENVLEALSNGTEK 928
Score = 77.0 bits (188), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 50/72 (69%), Gaps = 9/72 (12%)
Query: 842 TQEEEDPDK---------DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTD 892
++E DPDK +DYLLGM+ W LT E+KNELLK+RD K++EL+ L+K+ P
Sbjct: 1104 VKKEVDPDKAFKKLTDVKKFDYLLGMSMWMLTEEKKNELLKQRDYKLSELDNLRKRTPHQ 1163
Query: 893 LWSDDLDALREK 904
LW DDLDAL +K
Sbjct: 1164 LWLDDLDALEQK 1175
>gi|198473349|ref|XP_001356262.2| GA10169 [Drosophila pseudoobscura pseudoobscura]
gi|198139416|gb|EAL33325.2| GA10169 [Drosophila pseudoobscura pseudoobscura]
Length = 1450
Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/650 (61%), Positives = 461/650 (70%), Gaps = 105/650 (16%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYK 86
N +S+E++YQKKSQLEHILLRPD+YIGSVE E MW+ + E M +REI +VPGLYK
Sbjct: 4 GNALSIEQMYQKKSQLEHILLRPDSYIGSVEFTKELMWVYDFEKARMIQREIAFVPGLYK 63
Query: 87 IFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFG 146
IFDEILVNA DNKQRD MN IKI ++ E N +S+WNNG+GIPV HK++KM+VPTMI
Sbjct: 64 IFDEILVNAADNKQRDKSMNTIKIDIDAEKNVVSIWNNGQGIPVTMHKEQKMYVPTMI-- 121
Query: 147 HLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFV 206
FGHLLTSSNYND+E KVTGGRNGYGAKLCNIFS+ F
Sbjct: 122 -----------------------FGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTSFT 158
Query: 207 VETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDL 266
VET+ +YKK+FKQ W NMSK + IK + DFT+ITF+PDL KFKM LD+D+V L
Sbjct: 159 VETATKQYKKNFKQTWGSNMSKASDVTIKDFNGTDFTRITFSPDLAKFKMERLDEDIVAL 218
Query: 267 ITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDED-GDPVKIIYENVNPRWE 325
++RRA+D AAS+K V VFLNG KL VKNF+DY+ L+ QD+D G P+KI++E N RWE
Sbjct: 219 MSRRAFDVAASSKGVSVFLNGNKLTVKNFKDYIDLHVKNQDDDCGQPIKIVHEVANERWE 278
Query: 326 VAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
VA PSDRGFQQVSFVNSIATTKGGRHVD VVD ++KQ+IEV+KKKNK
Sbjct: 279 VACCPSDRGFQQVSFVNSIATTKGGRHVDHVVDNVIKQLIEVLKKKNK------------ 326
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTL 445
GG+ +KPFQV+NH+WIF+NCLI NPTFDSQTKENMTL
Sbjct: 327 -----------------------GGINIKPFQVRNHLWIFVNCLIENPTFDSQTKENMTL 363
Query: 446 QKGSFGSTC--------------------------------------------VPKLEDA 461
Q FGS C +PKLEDA
Sbjct: 364 QAKGFGSKCTLSEKFISSLSKSGIVESVLAWAKFKAQNDIAKTGGRKSSKIKGIPKLEDA 423
Query: 462 NDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILEN 521
N+AG KNSI+CTLILTEGDSAKSLAVSGLGV+GR+ YGVFPLRGKLLNVREA KQ+ EN
Sbjct: 424 NEAGGKNSINCTLILTEGDSAKSLAVSGLGVIGRNYYGVFPLRGKLLNVREANFKQLSEN 483
Query: 522 AEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTL 581
AEINNL KI+GLQY KKY T +D+KTLRYG++MIMTDQDQDGSHIKGL+INF+H NWP L
Sbjct: 484 AEINNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIMTDQDQDGSHIKGLLINFVHTNWPEL 543
Query: 582 LRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
LRLPFLEEFITPI+K TK EELSFYSLPEFEEWK +T N HTY +KYYK
Sbjct: 544 LRLPFLEEFITPIVKVTKKNEELSFYSLPEFEEWKMDTPNHHTYNVKYYK 593
Score = 161 bits (407), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 72/115 (62%), Positives = 88/115 (76%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEP WY+PIIPMVLVNGAEGIGTGW TKI N+NPREI N++RMI E+PLPM PWYKN
Sbjct: 814 RIEPLWYLPIIPMVLVNGAEGIGTGWSTKIANYNPREITRNLRRMINEEEPLPMHPWYKN 873
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F G ++Y D R+V G I IL +++EITEL +G WT +YK+ L+ L +G EK
Sbjct: 874 FTGRMEYISDGRYVHTGNIQILPGERVEITELPIGVWTQNYKENVLEALSNGTEK 928
Score = 77.0 bits (188), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 50/72 (69%), Gaps = 9/72 (12%)
Query: 842 TQEEEDPDK---------DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTD 892
++E DPDK +DYLLGM+ W LT E+KNELLK+RD K++EL+ L+K+ P
Sbjct: 1104 VKKEVDPDKAFKKLTDVKKFDYLLGMSMWMLTEEKKNELLKQRDYKLSELDNLRKRTPHQ 1163
Query: 893 LWSDDLDALREK 904
LW DDLDAL +K
Sbjct: 1164 LWLDDLDALEQK 1175
>gi|195484462|ref|XP_002090705.1| GE12650 [Drosophila yakuba]
gi|194176806|gb|EDW90417.1| GE12650 [Drosophila yakuba]
Length = 1441
Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/647 (61%), Positives = 464/647 (71%), Gaps = 105/647 (16%)
Query: 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFD 89
MS+E++YQKKSQLEHILLRPD+YIGSVE E MW+ ++ N M +REI++VPGLYKIFD
Sbjct: 8 MSIEQMYQKKSQLEHILLRPDSYIGSVEFTKELMWVYDKSQNRMVQREISFVPGLYKIFD 67
Query: 90 EILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
EILVNA DNKQRD MN IKI ++ E N +SVWNNG+GIPV HK++KM+VPTMIFGHLL
Sbjct: 68 EILVNAADNKQRDKSMNTIKIDIDPERNIVSVWNNGQGIPVTMHKEQKMYVPTMIFGHLL 127
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
TSSNYND +E KVTGGRNGYGAKLCNIFS+ F VET
Sbjct: 128 TSSNYND-------------------------DEKKVTGGRNGYGAKLCNIFSTSFTVET 162
Query: 210 SCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
+ EY+KSFKQ W +NM K + +IK + D+T+ITF+PDL KFKM +LD+D+V L++R
Sbjct: 163 ATREYRKSFKQTWGNNMGKASDVQIKDFNGTDYTRITFSPDLAKFKMETLDEDIVALMSR 222
Query: 270 RAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDED-GDPVKIIYENVNPRWEVAI 328
RAYD AAS+K V VFLNG KL V+NF+DY+ L+ D+D G P+KI++E N RWEVA
Sbjct: 223 RAYDVAASSKGVSVFLNGNKLSVRNFKDYIDLHVKSSDDDSGPPIKIVHEVANERWEVAC 282
Query: 329 APSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
PSDRGFQQVSFVNSIAT KGGRHVD VVD ++KQ++EV+KKKNK
Sbjct: 283 CPSDRGFQQVSFVNSIATYKGGRHVDHVVDNLIKQLLEVLKKKNK--------------- 327
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
GG+ +KPFQV+NH+W+F+NCLI NPTFDSQTKENMTLQ+
Sbjct: 328 --------------------GGINIKPFQVRNHLWVFVNCLIENPTFDSQTKENMTLQQK 367
Query: 449 SFGSTC--------------------------------------------VPKLEDANDA 464
FGS C +PKLEDAN+A
Sbjct: 368 GFGSKCTLSEKFINNMSKSGIVESVLAWAKFKAQNDIAKTGGRKSSKIKGIPKLEDANEA 427
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
G KNSI+CTLILTEGDSAKSLAVSGLGV+GR+ YGVFPLRGKLLNVREA KQ+ ENAEI
Sbjct: 428 GGKNSINCTLILTEGDSAKSLAVSGLGVIGRNFYGVFPLRGKLLNVREANFKQLSENAEI 487
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
NNL KI+GLQY KKY T +D+KTLRYG++MIMTDQDQDGSHIKGL+INFIH NWP LLRL
Sbjct: 488 NNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIMTDQDQDGSHIKGLLINFIHTNWPELLRL 547
Query: 585 PFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
PFLEEFITPI+KATK EELSFYSLPEFEEWK +T N HTY IKYYK
Sbjct: 548 PFLEEFITPIVKATKKNEELSFYSLPEFEEWKNDTANHHTYNIKYYK 594
Score = 161 bits (408), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 71/115 (61%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP+WY+PIIPMVLVNGAEGIGTGW TKI NHNPREI++N+++MI GE+P M PWYKN
Sbjct: 815 KIEPQWYLPIIPMVLVNGAEGIGTGWSTKIANHNPREIMNNLRKMINGEEPKVMHPWYKN 874
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F G ++Y D R+V G I IL +++EITEL VG WT +YK+ L+ L +G EK
Sbjct: 875 FTGRMEYVSDGRYVQTGNIQILPGNRVEITELPVGVWTQNYKENVLEPLANGTEK 929
Score = 57.8 bits (138), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 32/41 (78%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAP 890
K +DYLLGM+ W LT E+KNELLK+RD K+ EL L+KK P
Sbjct: 1121 KKFDYLLGMSMWMLTEEKKNELLKQRDAKLAELENLRKKTP 1161
>gi|395532490|ref|XP_003768303.1| PREDICTED: DNA topoisomerase 2-alpha isoform 1 [Sarcophilus
harrisii]
Length = 1561
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/649 (60%), Positives = 469/649 (72%), Gaps = 107/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + E + R++T+VPGLYKIF
Sbjct: 32 RLSVERIYQKKTQLEHILLRPDTYIGSVEVVTQQMWVYDEEVG-LNYRDVTFVPGLYKIF 90
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKMNCIK+T++ E NTIS+WNNGKGIPVVEHK EK++VP +IF
Sbjct: 91 DEILVNAADNKQRDPKMNCIKVTIDSENNTISIWNNGKGIPVVEHKVEKVYVPALIF--- 147
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS++F VE
Sbjct: 148 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTRFTVE 185
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+C EYKK FKQ W+DNM K +K S +D+T ITF PDL+KFKMT+LDKD+V L++
Sbjct: 186 TACKEYKKLFKQTWRDNMGKAGEMTLKPFSGEDYTCITFQPDLSKFKMTNLDKDIVALMS 245
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG +LPVK F+ YV LY D+ DE G+P+KII+E VN RWEV
Sbjct: 246 RRAYDIAGSTKDVKVFLNGNRLPVKGFRSYVDLYVKDKLDETGNPLKIIHEEVNNRWEVC 305
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D I+ ++I+VVKKKNK
Sbjct: 306 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIISRLIDVVKKKNK-------------- 351
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 352 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQA 390
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGS C +PKL+DAN
Sbjct: 391 KSFGSKCELSEKFIKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDAN 450
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG+KNS DCTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 451 DAGSKNSTDCTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENA 510
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +K+LRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 511 EINNIIKIVGLQYKKNYEDADSLKSLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 570
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
R FLEEFITPI+K ++ ++ELSFYSLPEFEEWK T N +K+KYYK
Sbjct: 571 RHCFLEEFITPIVKVSRNKQELSFYSLPEFEEWKNSTENHKKWKVKYYK 619
Score = 151 bits (381), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 840 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLMDGEEPLPMLPSYKN 899
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG ID ++++++GE++IL+ +EI+EL V WT YK+ L+ +L+G +K
Sbjct: 900 FKGTIDELAPNQYIISGEVSILNSTTIEISELPVRTWTQVYKEQVLEPMLNGTDK 954
Score = 59.3 bits (142), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL ++R +K EL LK+K+P+DLW +DL A E
Sbjct: 1132 FNYLLDMPLWYLTKEKKDELCRQRTEKEQELETLKRKSPSDLWREDLAAFVE 1183
>gi|395532492|ref|XP_003768304.1| PREDICTED: DNA topoisomerase 2-alpha isoform 2 [Sarcophilus
harrisii]
Length = 1550
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/649 (60%), Positives = 469/649 (72%), Gaps = 107/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + E + R++T+VPGLYKIF
Sbjct: 32 RLSVERIYQKKTQLEHILLRPDTYIGSVEVVTQQMWVYDEEVG-LNYRDVTFVPGLYKIF 90
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKMNCIK+T++ E NTIS+WNNGKGIPVVEHK EK++VP +IF
Sbjct: 91 DEILVNAADNKQRDPKMNCIKVTIDSENNTISIWNNGKGIPVVEHKVEKVYVPALIF--- 147
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS++F VE
Sbjct: 148 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTRFTVE 185
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+C EYKK FKQ W+DNM K +K S +D+T ITF PDL+KFKMT+LDKD+V L++
Sbjct: 186 TACKEYKKLFKQTWRDNMGKAGEMTLKPFSGEDYTCITFQPDLSKFKMTNLDKDIVALMS 245
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG +LPVK F+ YV LY D+ DE G+P+KII+E VN RWEV
Sbjct: 246 RRAYDIAGSTKDVKVFLNGNRLPVKGFRSYVDLYVKDKLDETGNPLKIIHEEVNNRWEVC 305
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D I+ ++I+VVKKKNK
Sbjct: 306 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIISRLIDVVKKKNK-------------- 351
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 352 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQA 390
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGS C +PKL+DAN
Sbjct: 391 KSFGSKCELSEKFIKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDAN 450
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG+KNS DCTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 451 DAGSKNSTDCTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENA 510
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +K+LRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 511 EINNIIKIVGLQYKKNYEDADSLKSLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 570
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
R FLEEFITPI+K ++ ++ELSFYSLPEFEEWK T N +K+KYYK
Sbjct: 571 RHCFLEEFITPIVKVSRNKQELSFYSLPEFEEWKNSTENHKKWKVKYYK 619
Score = 150 bits (380), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 840 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLMDGEEPLPMLPSYKN 899
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG ID ++++++GE++IL+ +EI+EL V WT YK+ L+ +L+G +K
Sbjct: 900 FKGTIDELAPNQYIISGEVSILNSTTIEISELPVRTWTQVYKEQVLEPMLNGTDK 954
Score = 59.3 bits (142), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL ++R +K EL LK+K+P+DLW +DL A E
Sbjct: 1132 FNYLLDMPLWYLTKEKKDELCRQRTEKEQELETLKRKSPSDLWREDLAAFVE 1183
>gi|240952142|ref|XP_002399322.1| DNA topoisomerase II, putative [Ixodes scapularis]
gi|215490528|gb|EEC00171.1| DNA topoisomerase II, putative [Ixodes scapularis]
Length = 1582
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/683 (58%), Positives = 483/683 (70%), Gaps = 115/683 (16%)
Query: 1 MSSDE---SDFDPDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVE 57
MSSDE S P +QNG +P + +SVE+IYQKKSQLEHILLRPDTYIGSVE
Sbjct: 1 MSSDEEYGSPTTPAAKQNG---APAAASNKGNLSVERIYQKKSQLEHILLRPDTYIGSVE 57
Query: 58 PITETMWLMNRETNH-MERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQET 116
PI++TMW+ + E N M+ R +TYVPGLYKIFDEILVNA DNKQRD M+CIKI ++ +
Sbjct: 58 PISQTMWVYDGEENGGMKNRSVTYVPGLYKIFDEILVNAADNKQRDKNMDCIKIEIDPDA 117
Query: 117 NTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTS 176
N IS+WNNG+GIPVVEHK EKMFVPT+I FGHLLTS
Sbjct: 118 NRISIWNNGRGIPVVEHKVEKMFVPTLI-------------------------FGHLLTS 152
Query: 177 SNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKS 236
SNYNDEE KVTGGRNGYGAKLCNIFS+KF+VET K+ FKQVW+DNM K T P+I++
Sbjct: 153 SNYNDEEKKVTGGRNGYGAKLCNIFSTKFIVETYSRSEKRLFKQVWEDNMKKTTEPKIRT 212
Query: 237 GSK-DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNF 295
K +DFT+ITF PDL+KF M LD D V L++RRAYD A T+ VKV+LNG++LPVK F
Sbjct: 213 EPKGEDFTRITFHPDLSKFSMEKLDADTVALLSRRAYDVAGCTRGVKVYLNGKRLPVKGF 272
Query: 296 QDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVAIAPSDRG-FQQVSFVNSIATTKGGRHV 353
+DYV L+ D++DE G+P+ ++YE+ + RWEVA+ S+ G F+Q+SFVNSIATTKGG HV
Sbjct: 273 KDYVGLFLKDKEDEAGNPLTVVYESPSDRWEVAVTLSEAGEFRQMSFVNSIATTKGGSHV 332
Query: 354 DAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMAL 413
D + + + K+++E VKKKNK G+ +
Sbjct: 333 DYIAEQLTKKVLENVKKKNK-----------------------------------AGVKI 357
Query: 414 KPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC------------------- 454
+ Q+K+H+W+F+NCLI NPTFDSQTKENMTLQ FGS C
Sbjct: 358 QNKQIKDHVWVFVNCLIENPTFDSQTKENMTLQAKKFGSKCELSDKFYNQVLKCGVVEAV 417
Query: 455 --------------------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVS 488
+PKLEDANDAGT+NS+DCTLILTEGDSAKSLAVS
Sbjct: 418 MSWLTFKAQKQLGMKCSAKKHSKLKGIPKLEDANDAGTRNSVDCTLILTEGDSAKSLAVS 477
Query: 489 GLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTL 548
GL VVGRDKYGVFPL+GK+LNVREA+HKQILENAEINN++KI+GLQY KKY +VED+K L
Sbjct: 478 GLAVVGRDKYGVFPLKGKMLNVREASHKQILENAEINNVIKIMGLQYKKKYESVEDLKAL 537
Query: 549 RYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYS 608
RYGRLMIMTDQDQDGSHIKGL+INFIHHNWP+LL+LPFLEEFITPI+KA+K + E+SFYS
Sbjct: 538 RYGRLMIMTDQDQDGSHIKGLVINFIHHNWPSLLKLPFLEEFITPIVKASKGKNEISFYS 597
Query: 609 LPEFEEWKEETTNWHTYKIKYYK 631
LPEFEEWK T +W +K+KYYK
Sbjct: 598 LPEFEEWKTATDDWQRWKVKYYK 620
Score = 168 bits (425), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 72/115 (62%), Positives = 96/115 (83%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE+Y+PI+PMVLVNGAEGIGTGW TK+PN++PRE+V N++RMI G++P PMKPW+KN
Sbjct: 841 KIEPEFYMPILPMVLVNGAEGIGTGWSTKVPNYDPREVVANLRRMIAGDEPKPMKPWFKN 900
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG +D + RFVV+GE+A+L + +EITEL V WT +YK+ L+T+LHG EK
Sbjct: 901 FKGTVDQVEEQRFVVSGEVALLSSNSIEITELPVRTWTQNYKENVLETMLHGTEK 955
Score = 67.8 bits (164), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 36/53 (67%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
Y+YLLGM WSLT ERK +LL KRD K EL L++K P DLWS DLD K
Sbjct: 1128 YNYLLGMPLWSLTRERKEDLLAKRDQKKGELESLQQKTPADLWSMDLDVFMAK 1180
>gi|195580167|ref|XP_002079927.1| Top2 [Drosophila simulans]
gi|194191936|gb|EDX05512.1| Top2 [Drosophila simulans]
Length = 1133
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/647 (61%), Positives = 464/647 (71%), Gaps = 105/647 (16%)
Query: 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFD 89
MS+E++YQKKSQLEHILLRPD+YIGSVE E MW+ + N M ++EI++VPGLYKIFD
Sbjct: 8 MSIEQMYQKKSQLEHILLRPDSYIGSVEFTKELMWVYDNSQNRMVQKEISFVPGLYKIFD 67
Query: 90 EILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
EILVNA DNKQRD MN IKI ++ E N +SVWNNG+GIPV HK++KM+VPTMI
Sbjct: 68 EILVNAADNKQRDKSMNTIKIDIDPERNIVSVWNNGQGIPVTMHKEQKMYVPTMI----- 122
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
FGHLLTSSNYND+E KVTGGRNGYGAKLCNIFS+ F VET
Sbjct: 123 --------------------FGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTSFTVET 162
Query: 210 SCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
+ EY+KSFKQ W +NM K + +IK + D+T+ITF+PDL KFKM LD+D+V L++R
Sbjct: 163 ATKEYRKSFKQTWGNNMGKASDVQIKDFNGTDYTRITFSPDLAKFKMDRLDEDIVALMSR 222
Query: 270 RAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDED-GDPVKIIYENVNPRWEVAI 328
RAYD AAS+K V VFLNG KL V+NF+DY+ L+ D+D G P+KI++E N RWEVA
Sbjct: 223 RAYDVAASSKGVSVFLNGNKLAVRNFKDYIDLHIKSTDDDSGPPIKIVHEVANERWEVAC 282
Query: 329 APSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
PSDRGFQQVSFVNSIAT KGGRHVD VVD ++KQ++EV+KKKNK
Sbjct: 283 CPSDRGFQQVSFVNSIATYKGGRHVDHVVDNLIKQLLEVLKKKNK--------------- 327
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
GG+ +KPFQV+NH+W+F+NCLI NPTFDSQTKENMTLQ+
Sbjct: 328 --------------------GGINIKPFQVRNHLWVFVNCLIENPTFDSQTKENMTLQQK 367
Query: 449 SFGSTC--------------------------------------------VPKLEDANDA 464
FGS C +PKLEDAN+A
Sbjct: 368 GFGSKCTLSDKFINNMSKSGIVESVLAWAKFKAQNDIAKTGGRKSSKIKGIPKLEDANEA 427
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
G KNSI+CTLILTEGDSAKSLAVSGLGV+GRD YGVFPLRGKLLNVREA +KQ+ ENAE+
Sbjct: 428 GGKNSINCTLILTEGDSAKSLAVSGLGVIGRDLYGVFPLRGKLLNVREANYKQLSENAEV 487
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
NNL KI+GLQY KKY T +D+KTLRYG++MIMTDQDQDGSHIKGL+INFIH NWP LLRL
Sbjct: 488 NNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIMTDQDQDGSHIKGLLINFIHTNWPELLRL 547
Query: 585 PFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
PFLEEFITPI+KATK +EELSFYSLPEFEEWK +T N HTY IKYYK
Sbjct: 548 PFLEEFITPIVKATKKKEELSFYSLPEFEEWKNDTANHHTYNIKYYK 594
Score = 157 bits (398), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP WY+PIIPMVLVNGAEGIGTGW TKI N+NPREI++N+++MI G++P+ M PWYKN
Sbjct: 815 KIEPLWYLPIIPMVLVNGAEGIGTGWSTKISNYNPREIMNNLRKMINGQEPVVMHPWYKN 874
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYK-DTLDTLLHGAEK 772
F G I+Y D R+V G + IL ++LEI+EL VG WT +YK + L+ L +G EK
Sbjct: 875 FLGRIEYVSDGRYVQTGNLQILHGNRLEISELPVGVWTQNYKENVLEALSNGTEK 929
>gi|301626919|ref|XP_002942632.1| PREDICTED: DNA topoisomerase 2-alpha, partial [Xenopus (Silurana)
tropicalis]
Length = 1458
Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/655 (60%), Positives = 474/655 (72%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
KK+ ++SVE+IYQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + E + R++T+VP
Sbjct: 18 KKSDNKRLSVERIYQKKTQLEHILLRPDTYIGSVEPVTQQMWVFD-EDEGLNCRDVTFVP 76
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRDP M+CIKIT+N E+NT+SVWNNGKGIPVVEHK EK+FVP
Sbjct: 77 GLYKIFDEILVNAADNKQRDPTMSCIKITINPESNTVSVWNNGKGIPVVEHKVEKVFVPA 136
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D++ KVTGGRNGYGAKLCNIFS
Sbjct: 137 LIF-------------------------GQLLTSSNYDDDQKKVTGGRNGYGAKLCNIFS 171
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYKK FKQ W DNMS +IK +D+T ITF PDL+KFKM LDKD
Sbjct: 172 NKFTVETACREYKKVFKQTWTDNMSDAADAKIKPFDGEDYTCITFQPDLSKFKMQILDKD 231
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVN 321
+V L++RRAYD A S+K VKVFLNG++LP+ F+ YV LY ++ DE G+P+K+++E VN
Sbjct: 232 IVALMSRRAYDVAGSSKGVKVFLNGKRLPISGFRSYVDLYLKNKLDETGNPLKVMHELVN 291
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RWE+ + S++GFQQ+SFVNSIATTKGGRHVD V D I+ ++IEVVKKKNK
Sbjct: 292 DRWEICLTMSEKGFQQISFVNSIATTKGGRHVDYVADQIIAKLIEVVKKKNK-------- 343
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
GG+A+KPFQVKNH+W+F+N LI NPTFDSQTKE
Sbjct: 344 ---------------------------GGIAVKPFQVKNHMWVFVNSLIENPTFDSQTKE 376
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 377 NMTLQSKSFGSKCTLSEKFIKGATNCGIVESILNWVKFKAQTQLNKKCSSVKHTKIKGIP 436
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG++NS+DCTLILTEGDSAK+LAVSGLGVVGRD+YGVFPLRGKLLNVREA+HK
Sbjct: 437 KLDDANDAGSRNSLDCTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLRGKLLNVREASHK 496
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 497 QIMENAEINNIIKIVGLQYKKNYDDNESLKTLRYGKVMIMTDQDQDGSHIKGLLINFIHH 556
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPIIK TK+++ELSFYS+PEFEEWK T + T+KIKYYK
Sbjct: 557 NWPSLLKHRFLEEFITPIIKVTKSKQELSFYSIPEFEEWKNNTDSHKTWKIKYYK 611
Score = 150 bits (379), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 71/133 (53%), Positives = 96/133 (72%), Gaps = 5/133 (3%)
Query: 645 LHKVTSDSISMFI----GRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNI 700
L DS+ F+ ++EPEWYIPIIP VLVNGAEGIGTGW KIPN++ REIV NI
Sbjct: 760 LFPAMDDSVLKFMYDDNQKVEPEWYIPIIPTVLVNGAEGIGTGWSCKIPNYDTREIVSNI 819
Query: 701 KRMIRGEDPLPMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYK 760
R++ G +PLPM P YKNFKG I G +++++NGE+++LD+ +EI+EL V WT +YK
Sbjct: 820 GRLLDGLEPLPMLPSYKNFKGLIQELGPNQYILNGEVSVLDNTTIEISELPVRTWTQNYK 879
Query: 761 D-TLDTLLHGAEK 772
+ L+ +L+G EK
Sbjct: 880 EQVLEPMLNGTEK 892
Score = 67.0 bits (162), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 40/53 (75%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
D++YLLGM W+L+ E+K+EL K+RD K EL LKKK+P+DLW +DL A E
Sbjct: 1060 DFNYLLGMPLWNLSKEKKDELCKQRDVKNAELQDLKKKSPSDLWKEDLSAFVE 1112
>gi|45382161|ref|NP_990122.1| DNA topoisomerase 2-alpha [Gallus gallus]
gi|13959708|sp|O42130.2|TOP2A_CHICK RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
topoisomerase II, alpha isozyme
gi|6714553|dbj|BAA22539.2| DNA topoisomeraseII_alpha [Gallus gallus]
Length = 1553
Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/657 (60%), Positives = 471/657 (71%), Gaps = 107/657 (16%)
Query: 21 PKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITY 80
PK ++SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + R++T+
Sbjct: 20 PKADGAQKRLSVERIYQKKTQLEHILLRPDTYIGSVETVTQQMWVFDEDVG-LNCRDVTF 78
Query: 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
VPGLYKIFDEILVNA DNKQRD M+CIK+T++ E NTISVWNNGKGIPVVEHK EK++V
Sbjct: 79 VPGLYKIFDEILVNAADNKQRDKSMSCIKVTIDPENNTISVWNNGKGIPVVEHKVEKVYV 138
Query: 141 PTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNI 200
P +IF G LLTSSNY+D+E KVTGGRNGYGAKLCNI
Sbjct: 139 PALIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNI 173
Query: 201 FSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLD 260
FS+KF VET+C EYKK FKQ W DNM K +K +D+T +TF PDL+KFKMT LD
Sbjct: 174 FSTKFTVETACREYKKLFKQTWTDNMGKAGEMTLKHFDGEDYTCVTFQPDLSKFKMTILD 233
Query: 261 KDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYEN 319
KD+V L++RRAYD A STKDVKVFLNG++LPVK F+ YV LY D+ DE G+ +K+I+E
Sbjct: 234 KDIVALMSRRAYDIAGSTKDVKVFLNGKRLPVKGFRSYVDLYLKDKVDETGNALKVIHEE 293
Query: 320 VNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTI 379
VN RWEV + S++GFQQVSFVNSIATTKGGRHVD V D IV ++I+VVKKKNK+
Sbjct: 294 VNSRWEVCLTLSEKGFQQVSFVNSIATTKGGRHVDYVADQIVTKLIDVVKKKNKN----- 348
Query: 380 IMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQT 439
G+ +KPFQVKNH+WIF+N LI NPTFDSQT
Sbjct: 349 ------------------------------GVGVKPFQVKNHMWIFVNSLIENPTFDSQT 378
Query: 440 KENMTLQKGSFGSTC--------------------------------------------- 454
KENMTLQ SFGSTC
Sbjct: 379 KENMTLQAKSFGSTCKLSEKFIKGAVGCGIVESILNWVKFKAQTQLNKKCSAVKHTKIKG 438
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
VPKL+DANDAG+KNSIDCTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+
Sbjct: 439 VPKLDDANDAGSKNSIDCTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKMLNVREAS 498
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
HKQI+ENAEINN++KI+GLQY K Y E +K+LRYG++MIMTDQDQDGSHIKGL+INFI
Sbjct: 499 HKQIMENAEINNIIKIVGLQYKKNYEDRESLKSLRYGKIMIMTDQDQDGSHIKGLLINFI 558
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
HHNWP+LLR FLEEFITPIIK +K +EE+ FYS+PEFEEWK T N++++KIKYYK
Sbjct: 559 HHNWPSLLRHNFLEEFITPIIKVSKNKEEIPFYSIPEFEEWKSSTQNYNSWKIKYYK 615
Score = 151 bits (381), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWY+PIIPMVL+NGAEGIGTGW KIPN + RE V+NI+ ++ G++PLPM P YKN
Sbjct: 836 RVEPEWYMPIIPMVLINGAEGIGTGWSCKIPNFDIRETVNNIRCLLDGKEPLPMLPSYKN 895
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG ID G +++V++GE++ILD +EITEL V WT YK+ L+ +L+G EK
Sbjct: 896 FKGTIDELGPNQYVISGEVSILDSTTIEITELPVRTWTQTYKEQVLEPMLNGTEK 950
Score = 63.2 bits (152), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 38/53 (71%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
D++YLL M W LT E+K+EL K+RD+K EL LK K+P+DLW +DL A E
Sbjct: 1116 DFNYLLNMPLWYLTKEKKDELCKQRDNKDKELEDLKHKSPSDLWKEDLAAFVE 1168
>gi|334322751|ref|XP_001369978.2| PREDICTED: DNA topoisomerase 2-alpha [Monodelphis domestica]
Length = 1668
Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/649 (60%), Positives = 468/649 (72%), Gaps = 107/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + E + R++T+VPGLYKIF
Sbjct: 139 RLSVERIYQKKTQLEHILLRPDTYIGSVEVVTQQMWVYDEEVG-LNYRDVTFVPGLYKIF 197
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKMNCIK+T++ E NTIS+WNNGKGIPVVEHK EK++VP +IF
Sbjct: 198 DEILVNAADNKQRDPKMNCIKVTIDSENNTISIWNNGKGIPVVEHKVEKVYVPALIF--- 254
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 255 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 292
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+C EYKK FKQ W DNM K +K S +D+T ITF PDL+KFKMTSLDKDMV L++
Sbjct: 293 TACKEYKKMFKQTWMDNMGKAGEMTLKPFSGEDYTCITFQPDLSKFKMTSLDKDMVALMS 352
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG +LPVK F+ YV LY D+ DE G+P+KII+E VN RWEV
Sbjct: 353 RRAYDIAGSTKDVKVFLNGNRLPVKGFRSYVDLYVKDKLDETGNPLKIIHEEVNHRWEVC 412
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D I+ ++I+VVKKKNK
Sbjct: 413 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIISRLIDVVKKKNK-------------- 458
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 459 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQA 497
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
+FGS C +PKL+DAN
Sbjct: 498 KNFGSKCELSEKFIKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDAN 557
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG+KNS DCTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 558 DAGSKNSTDCTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENA 617
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +K+LRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 618 EINNIIKIVGLQYKKNYEDADSLKSLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 677
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+ FLEEFITPI+K ++ ++E+SFYSLPEFEEWK T N +K+KYYK
Sbjct: 678 KHCFLEEFITPIVKVSRNKQEMSFYSLPEFEEWKNTTENHKKWKVKYYK 726
Score = 150 bits (380), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 947 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLMDGEEPLPMLPSYKN 1006
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG ID +++V++GE++I++ +EI+EL V WT YK+ L+ +L+G +K
Sbjct: 1007 FKGTIDELAPNQYVISGEVSIINSTTIEISELPVRTWTQVYKEQVLEPMLNGTDK 1061
Score = 58.9 bits (141), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL ++R +K EL LK+K+P+DLW +DL A E
Sbjct: 1239 FNYLLDMPLWYLTKEKKDELCRQRTEKEQELENLKRKSPSDLWKEDLAAFVE 1290
>gi|410911494|ref|XP_003969225.1| PREDICTED: DNA topoisomerase 2-beta-like [Takifugu rubripes]
Length = 1605
Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/662 (58%), Positives = 473/662 (71%), Gaps = 107/662 (16%)
Query: 16 GNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMER 75
G + +K A+K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M +
Sbjct: 24 GKMEAARKDKAASKLSVERVYQKKTQLEHILLRPDTYIGSVEPVTQQMWVFDEDVG-MNQ 82
Query: 76 REITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKD 135
REI+YVPGLYKIFDEILVNA DNKQRD M IKI+++ E+NTIS+WNNGKGIPVVEHKD
Sbjct: 83 REISYVPGLYKIFDEILVNAADNKQRDKNMTAIKISIDPESNTISIWNNGKGIPVVEHKD 142
Query: 136 EKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGA 195
EKM+VP +IF GHLLTSSNY+DEE KVTGGRNGYGA
Sbjct: 143 EKMYVPALIF-------------------------GHLLTSSNYDDEEKKVTGGRNGYGA 177
Query: 196 KLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFK 255
KLCNIFS+KF VET+C EY+ SFKQ W++NM+K + P++K DDFT +TF PDL+KFK
Sbjct: 178 KLCNIFSTKFTVETACKEYRHSFKQTWQNNMTKTSDPKVKFFDGDDFTCVTFQPDLSKFK 237
Query: 256 MTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVK 314
M LDKD++ L+TRRAYD A S K VKV LNG+KLPV F+ YV LY D+ DE G +K
Sbjct: 238 MEKLDKDIIALLTRRAYDVAGSCKGVKVTLNGKKLPVNGFRSYVDLYVKDKLDETGVALK 297
Query: 315 IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKD 374
++ E VN RWEV + S++GFQQ+SFVNSIATTKGGRH+D VVD IV ++IEVVKKKNK
Sbjct: 298 VVNEAVNERWEVCLTLSEKGFQQISFVNSIATTKGGRHIDYVVDQIVAKLIEVVKKKNK- 356
Query: 375 LGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPT 434
G+ +KPFQVKNHIW+F+N LI NP+
Sbjct: 357 ----------------------------------AGVTVKPFQVKNHIWVFVNALIENPS 382
Query: 435 FDSQTKENMTLQKGSFGSTC---------------------------------------- 454
FDSQTKENMTLQ SFGS C
Sbjct: 383 FDSQTKENMTLQTKSFGSKCPLSDKFIRAATNCGIVESILNWVKFKAQTQLNKKCSSVKH 442
Query: 455 -----VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLN 509
+PKL+DANDAG K+S +CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LN
Sbjct: 443 SKIKGIPKLDDANDAGGKHSSECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILN 502
Query: 510 VREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGL 569
VREATHKQI+ENAEINN++KI+GLQY K Y E +++LRYG++MIMTDQDQDGSHIKGL
Sbjct: 503 VREATHKQIMENAEINNIIKIVGLQYKKSYDDPESLRSLRYGKIMIMTDQDQDGSHIKGL 562
Query: 570 IINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKY 629
+INF HHNWP+LL+ FLEEFITPI+KATK ++E++FYS+PEF+EWK+ T N+ ++ IKY
Sbjct: 563 LINFFHHNWPSLLKHTFLEEFITPIVKATKNKQEMAFYSIPEFDEWKKHTENYKSWHIKY 622
Query: 630 YK 631
YK
Sbjct: 623 YK 624
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
++EPEWYIPIIPMVLVNGAEGIGTGW KIPN++ REIV+NI RM+ +DPL M P YKN
Sbjct: 845 KVEPEWYIPIIPMVLVNGAEGIGTGWACKIPNYDVREIVNNIYRMLNHQDPLQMLPSYKN 904
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
FKG I G ++++V+GE++++D + +E+TEL V WT YK++ L+ +L G++K
Sbjct: 905 FKGVIHELGQNQYLVSGEVSVIDKNTIEVTELPVRTWTQAYKESVLEPMLQGSDK 959
Score = 61.6 bits (148), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%)
Query: 826 QERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNIL 885
QE+ E +E+ + +++Y+L M W LT ER ELLK+RD K ELN L
Sbjct: 1104 QEKALEEDGGNESDTSLDSGSTSGPNFNYILNMPLWCLTKERVEELLKQRDLKRGELNEL 1163
Query: 886 KKKAPTDLWSDDLDALRE 903
+KK+P DLW +DL E
Sbjct: 1164 QKKSPEDLWKEDLAVFVE 1181
>gi|427791141|gb|JAA61022.1| Putative dna topoisomerase type ii, partial [Rhipicephalus
pulchellus]
Length = 1662
Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/691 (58%), Positives = 472/691 (68%), Gaps = 148/691 (21%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNH-MERREITYVPGLYKI 87
++SVE+IYQKKSQLEHILLRPDTYIGSVEP+T+ MW+ + E N M+ R IT+VPGLYKI
Sbjct: 91 RLSVERIYQKKSQLEHILLRPDTYIGSVEPVTQNMWVYDGEENGGMKNRSITFVPGLYKI 150
Query: 88 FDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGH 147
FDEILVNA DNKQRD M+CIKI ++ E N IS+WNNGKGIPVVEHK EKMFVPT+IFGH
Sbjct: 151 FDEILVNAADNKQRDKNMDCIKIEIDAEQNRISIWNNGKGIPVVEHKVEKMFVPTLIFGH 210
Query: 148 LLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVV 207
LLTSSNYND EE KVTGGRNGYGAKLCNIFS+KF V
Sbjct: 211 LLTSSNYND-------------------------EEKKVTGGRNGYGAKLCNIFSTKFTV 245
Query: 208 ETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDL 266
ET KK FKQVW+DNM K T P+I++ K DDFTKITF PDL KFKM LD D V L
Sbjct: 246 ETYSRSEKKLFKQVWEDNMKKTTDPKIRTEPKGDDFTKITFNPDLAKFKMEKLDPDTVAL 305
Query: 267 ITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWE 325
++RRAYD A T+ VKV+LNG++LPVK F+DY +L+ D++DE G+P+ ++YE+VN RWE
Sbjct: 306 LSRRAYDVAGCTRGVKVYLNGKRLPVKGFKDYTQLFVKDKEDEAGNPLTVVYESVNDRWE 365
Query: 326 VAIAPSDRG----------------------------------------FQQVSFVNSIA 345
VA+ S+ G F+Q+SFVNSIA
Sbjct: 366 VAVTLSESGDFRQMSFVNSIATTKGGXXVVYESVNDRWEVAVTLSESGDFRQMSFVNSIA 425
Query: 346 TTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIG 405
TTKGG HVD V D +VK+I+E+VKKKNK
Sbjct: 426 TTKGGSHVDYVADQLVKKILEIVKKKNK-------------------------------- 453
Query: 406 VRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC----------- 454
G+ ++ QVK+H+W+F+NCLI NPTFDSQTKENMTLQ FGS C
Sbjct: 454 ---AGVKIQNKQVKDHLWVFVNCLIENPTFDSQTKENMTLQVKKFGSKCELSDKFYNQVL 510
Query: 455 ----------------------------------VPKLEDANDAGTKNSIDCTLILTEGD 480
+PKLEDANDAGT+NS+DCTLILTEGD
Sbjct: 511 KCGVVEAVMSWVNFKAQKQLGQKCSAKKHSKLKGIPKLEDANDAGTRNSVDCTLILTEGD 570
Query: 481 SAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYT 540
SAKSLAVSGL VVGRDK+GVFPL+GK+LNVREATHKQILENAEINN++KI+GLQY KKY
Sbjct: 571 SAKSLAVSGLAVVGRDKFGVFPLKGKILNVREATHKQILENAEINNVIKIMGLQYKKKYE 630
Query: 541 TVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKA 600
+VED+KTLRYGRLMIMTDQDQDGSHIKGL+INFIHHNWP+LL+LPFLEEFITPI+KATK
Sbjct: 631 SVEDLKTLRYGRLMIMTDQDQDGSHIKGLLINFIHHNWPSLLKLPFLEEFITPIVKATKG 690
Query: 601 REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+ ELSFYSLPEFEEWK T +W +K+KYYK
Sbjct: 691 KTELSFYSLPEFEEWKAATDDWQRWKVKYYK 721
Score = 165 bits (417), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 72/115 (62%), Positives = 93/115 (80%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPE+YIPI+PMVLVNGAEGIGTGW TKIPN+NPREIV N+++M+ GE+ PMKPW+KN
Sbjct: 942 RIEPEYYIPILPMVLVNGAEGIGTGWSTKIPNYNPREIVANLRKMLNGEETKPMKPWFKN 1001
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
F+G +D RF+++GE+AIL +EITEL V WT YK++ L+ +LHG+EK
Sbjct: 1002 FRGSVDQVEPQRFLISGEVAILSSTTIEITELPVRTWTQAYKESVLEAMLHGSEK 1056
Score = 68.2 bits (165), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 37/53 (69%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
Y+YLLGM WSLT ERK +LL KRD K E+ L++K P +LW +DLDA K
Sbjct: 1261 YNYLLGMPLWSLTRERKEDLLAKRDQKRAEVETLRRKTPENLWEEDLDAFMTK 1313
Score = 41.2 bits (95), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 15/85 (17%)
Query: 1046 CRLDEVERKEKEEENSNITKI--------KSKLKEKGSKKRNPLSSLDDTMPSAAGRRVE 1097
+LDEVE+ E++EE+S K K ++K GSKK +T PS G RVE
Sbjct: 1312 TKLDEVEKIERDEESSTGAKAAGLKLATGKGRVKGSGSKKMEA-----ETQPSPFGERVE 1366
Query: 1098 PKYE-ELLIKAEKAAAP-KKPNEVL 1120
PK + E K EK A P +KP + L
Sbjct: 1367 PKVDWEAKRKTEKGAGPGRKPKKSL 1391
>gi|148222806|ref|NP_001082502.1| topoisomerase (DNA) II alpha 170kDa [Xenopus laevis]
gi|47939759|gb|AAH72193.1| LOC398512 protein [Xenopus laevis]
Length = 1579
Score = 801 bits (2068), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/655 (60%), Positives = 473/655 (72%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
KK+ ++SVE+IYQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + E + R+IT+VP
Sbjct: 19 KKSDNKRLSVERIYQKKTQLEHILLRPDTYIGSVEPVTQQMWVFD-EDEGLNCRDITFVP 77
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRDP M+CIKIT++ + NTISVWNNGKGIPVVEHK EK++VP
Sbjct: 78 GLYKIFDEILVNAADNKQRDPTMSCIKITIDPDNNTISVWNNGKGIPVVEHKVEKVYVPA 137
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D++ KVTGGRNGYGAKLCNIFS
Sbjct: 138 LIF-------------------------GQLLTSSNYDDDQKKVTGGRNGYGAKLCNIFS 172
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYKK FKQ W +NMS P+IK +DFT ITF PDL+KFKM LDKD
Sbjct: 173 NKFTVETACREYKKIFKQTWTNNMSNAPDPKIKPFEGEDFTCITFQPDLSKFKMQILDKD 232
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVN 321
+V L++RRAYD A S+K VKVFLNG++LPV F+ YV++Y D+ DE G+P K+++E VN
Sbjct: 233 IVALMSRRAYDVAGSSKGVKVFLNGKRLPVSGFRTYVEMYLKDKLDETGNPFKVMHEQVN 292
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RWEV + S++GFQQ+SFVNSIATTKGGRHVD V D IV ++I+VVKKKNK
Sbjct: 293 DRWEVCLTMSEKGFQQISFVNSIATTKGGRHVDYVADQIVTKLIDVVKKKNK-------- 344
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
GG+++KPFQVKNH+W+F+N LI NPTFDSQTKE
Sbjct: 345 ---------------------------GGISVKPFQVKNHMWVFVNALIENPTFDSQTKE 377
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 378 NMTLQSKSFGSKCTLSEKFIKGATSCGIVESILNWVKFKAQTQLNKKCSAVKHTKIKGIP 437
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG++NS++CTLILTEGDSAK+LAVSGLGVVGRD+YGVFPLRGKLLNVREA+HK
Sbjct: 438 KLDDANDAGSRNSLECTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLRGKLLNVREASHK 497
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E ++TLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 498 QIMENAEINNIIKIVGLQYKKNYDDNESLRTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 557
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPIIK TK ++ELSFYS+PEFEEWK T + T+KIKYYK
Sbjct: 558 NWPSLLKHCFLEEFITPIIKVTKNKQELSFYSIPEFEEWKNNTESHKTWKIKYYK 612
Score = 150 bits (379), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
++EPEWYIPIIPMVLVNGAEGIGTGW K+PN++ REIV+NI+RM+ G++P M P YKN
Sbjct: 833 KVEPEWYIPIIPMVLVNGAEGIGTGWSCKLPNYDTREIVNNIRRMLDGDEPQQMLPSYKN 892
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G ++F++NGE+++LD +EI+EL WT +YK+ L+ +L+G EK
Sbjct: 893 FKGVIQELGPNQFILNGEVSVLDSTTIEISELPARTWTQNYKEQVLEPMLNGTEK 947
Score = 61.2 bits (147), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 36/51 (70%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
D++YLL M W LT E+K EL K+RD K TEL LK+K+PTDL+ DL A
Sbjct: 1114 DFNYLLSMPLWYLTKEKKEELCKQRDTKNTELQDLKRKSPTDLYKQDLVAF 1164
>gi|17136538|ref|NP_476760.1| topoisomerase 2, isoform A [Drosophila melanogaster]
gi|442628399|ref|NP_001260580.1| topoisomerase 2, isoform B [Drosophila melanogaster]
gi|135995|sp|P15348.1|TOP2_DROME RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
II
gi|8711|emb|CAA43523.1| DNA topoisomerase type II [Drosophila melanogaster]
gi|22946840|gb|AAF53802.2| topoisomerase 2, isoform A [Drosophila melanogaster]
gi|440213938|gb|AGB93115.1| topoisomerase 2, isoform B [Drosophila melanogaster]
Length = 1447
Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/647 (61%), Positives = 461/647 (71%), Gaps = 105/647 (16%)
Query: 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFD 89
+S+E++YQKKSQLEHILLRPD+YIGSVE E MW+ + N M ++EI++VPGLYKIFD
Sbjct: 8 LSIEQMYQKKSQLEHILLRPDSYIGSVEFTKELMWVYDNSQNRMVQKEISFVPGLYKIFD 67
Query: 90 EILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
EILVNA DNKQRD MN IKI ++ E N +SVWNNG+GIPV HK++KM+VPTMI
Sbjct: 68 EILVNAADNKQRDKSMNTIKIDIDPERNMVSVWNNGQGIPVTMHKEQKMYVPTMI----- 122
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
FGHLLTSSNYND+E KVTGGRNGYGAKLCNIFS+ F VET
Sbjct: 123 --------------------FGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTSFTVET 162
Query: 210 SCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
+ EYKKSFKQ W +NM K + +IK + D+T+ITF+PDL KFKM LD+D+V L++R
Sbjct: 163 ATREYKKSFKQTWGNNMGKASDVQIKDFNGTDYTRITFSPDLAKFKMDRLDEDIVALMSR 222
Query: 270 RAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDED-GDPVKIIYENVNPRWEVAI 328
RAYD AAS+K V VFLNG KL V+NF+DY+ L+ D+D G P+KI++E N RWEVA
Sbjct: 223 RAYDVAASSKGVSVFLNGNKLGVRNFKDYIDLHIKNTDDDSGPPIKIVHEVANERWEVAC 282
Query: 329 APSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
PSDRGFQQVSFVNSIAT KGGRHVD VVD ++KQ++EV+KKKNK
Sbjct: 283 CPSDRGFQQVSFVNSIATYKGGRHVDHVVDNLIKQLLEVLKKKNK--------------- 327
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
GG+ +KPFQV+NH+W+F+NCLI NPTFDSQTKENMTLQ+
Sbjct: 328 --------------------GGINIKPFQVRNHLWVFVNCLIENPTFDSQTKENMTLQQK 367
Query: 449 SFGSTC--------------------------------------------VPKLEDANDA 464
FGS C +PKLEDAN+A
Sbjct: 368 GFGSKCTLSEKFINNMSKSGIVESVLAWAKFKAQNDIAKTGGRKSSKIKGIPKLEDANEA 427
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
G KNSI CTLILTEGDSAKSLAVSGLGV+GRD YGVFPLRGKLLNVREA KQ+ ENAEI
Sbjct: 428 GGKNSIKCTLILTEGDSAKSLAVSGLGVIGRDLYGVFPLRGKLLNVREANFKQLSENAEI 487
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
NNL KI+GLQY KKY T +D+KTLRYG++MIMTDQDQDGSHIKGL+INFIH NWP LLRL
Sbjct: 488 NNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIMTDQDQDGSHIKGLLINFIHTNWPELLRL 547
Query: 585 PFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
PFLEEFITPI+KATK EELSFYSLPEFEEWK +T N HTY IKYYK
Sbjct: 548 PFLEEFITPIVKATKKNEELSFYSLPEFEEWKNDTANHHTYNIKYYK 594
Score = 154 bits (388), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 88/115 (76%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP WY+PIIPMVLVNGAEGIGTGW TKI N+NPREI+ N+++MI G++P M PWYKN
Sbjct: 815 KIEPLWYLPIIPMVLVNGAEGIGTGWSTKISNYNPREIMKNLRKMINGQEPSVMHPWYKN 874
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F G ++Y D R++ G I IL ++LEI+EL VG WT +YK+ L+ L +G EK
Sbjct: 875 FLGRMEYVSDGRYIQTGNIQILSGNRLEISELPVGVWTQNYKENVLEPLSNGTEK 929
Score = 75.1 bits (183), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 42/55 (76%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
K +DYLLGM+ W LT E+KNELLK+RD K++EL L+KK P LW DDLDAL K
Sbjct: 1121 KKFDYLLGMSMWMLTEEKKNELLKQRDTKLSELESLRKKTPEMLWLDDLDALESK 1175
>gi|432882842|ref|XP_004074154.1| PREDICTED: DNA topoisomerase 2-beta-like [Oryzias latipes]
Length = 1599
Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/656 (59%), Positives = 471/656 (71%), Gaps = 107/656 (16%)
Query: 22 KKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYV 81
KK A+K+SVE++YQKK+ LEHILLRPDTY+GSVEP+++ MW+ + + M +REITYV
Sbjct: 30 KKDKAASKLSVERVYQKKTPLEHILLRPDTYVGSVEPVSQPMWVFDEDVG-MNQREITYV 88
Query: 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVP 141
PGLYKIFDEILVNA DNKQRD M+ IKIT++ E+NTI++WNNGKGIPVVEHKDEKM+VP
Sbjct: 89 PGLYKIFDEILVNAADNKQRDKNMSAIKITIDPESNTITIWNNGKGIPVVEHKDEKMYVP 148
Query: 142 TMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIF 201
+IF GHLLTSSNY+DEE KVTGGRNGYGAKLCNIF
Sbjct: 149 ALIF-------------------------GHLLTSSNYDDEEKKVTGGRNGYGAKLCNIF 183
Query: 202 SSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDK 261
S+KF VET+C EY+ SFKQ W++NM+K + P+I+ DDFT +TF PDL KFKM LD+
Sbjct: 184 STKFTVETACKEYRHSFKQTWQNNMTKTSEPKIRFFDGDDFTCVTFQPDLAKFKMEKLDR 243
Query: 262 DMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENV 320
D V L+TRRAYD A S + VKV LNG+KLPV F+ YV LY ++ DE G P+K++ E V
Sbjct: 244 DTVALMTRRAYDVAGSCRGVKVTLNGKKLPVNGFRSYVDLYVKEKLDETGVPLKVVNEMV 303
Query: 321 NPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTII 380
N RWEV + S++GFQQ+SFVNSIATTKGGRH+D VVD IV +IIEVVKKKNK
Sbjct: 304 NDRWEVCLTMSEKGFQQISFVNSIATTKGGRHIDYVVDQIVAKIIEVVKKKNK------- 356
Query: 381 MLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTK 440
G+ +KPFQVKNHIW+F+N LI NPTFDSQTK
Sbjct: 357 ----------------------------AGVTVKPFQVKNHIWVFVNALIENPTFDSQTK 388
Query: 441 ENMTLQKGSFGSTCV--------------------------------------------- 455
ENMTLQ SFGS CV
Sbjct: 389 ENMTLQTKSFGSKCVLSEKFIRAATNCGIVESILNWVKFKAQTQLNKKCSSVKHSKIKGI 448
Query: 456 PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATH 515
PKL+DANDAG K+S +CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREATH
Sbjct: 449 PKLDDANDAGGKHSSECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREATH 508
Query: 516 KQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIH 575
KQI+ENAEINN++KI+GLQY K Y E +++LRYG++MIMTDQDQDGSHIKGL+INF H
Sbjct: 509 KQIMENAEINNIIKIVGLQYKKSYDDPESLRSLRYGKIMIMTDQDQDGSHIKGLLINFFH 568
Query: 576 HNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
HNWP+LL+ FLE+FITPI+KATK ++ELSFYSLPEFEEWK++T N+ ++ +KYYK
Sbjct: 569 HNWPSLLKHTFLEQFITPIVKATKNKQELSFYSLPEFEEWKKQTDNYKSWHVKYYK 624
Score = 158 bits (399), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 70/115 (60%), Positives = 92/115 (80%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
++EPEWYIPIIPMVLVNGAEGIGTGW KIPN++PREIV+NI RM+ +DPLPM P YKN
Sbjct: 845 KVEPEWYIPIIPMVLVNGAEGIGTGWACKIPNYDPREIVNNINRMLNHQDPLPMLPSYKN 904
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
FKG I G ++++V+GE+++LD + +EITEL V WT YK++ L+ +L G +K
Sbjct: 905 FKGVIHELGQNQYLVSGEVSVLDKNTIEITELPVRTWTQAYKESVLEPMLQGTDK 959
Score = 58.2 bits (139), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 8/185 (4%)
Query: 826 QERQAAEGEDD--EAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELN 883
QE+ EGE D ++ S +++Y+L M W LT E+ ELLK+RD K EL
Sbjct: 1104 QEKAQEEGETDGNQSDSSVDSGSSSGPNFNYILNMPLWCLTKEKVEELLKQRDIKRGELA 1163
Query: 884 ILKKKAPTDLWSDDLDA-LREKDKIHPCPGGNRTRGLALK--RQTRYQPSNRVLTSRDEP 940
L+KK+ DLW +DL + E D + ++ G A+K + +P + + + +E
Sbjct: 1164 DLQKKSSEDLWKEDLAVFIEELDNVEAQEREEQSAGRAIKLVKGKVGKPKAKKM-NLEET 1222
Query: 941 MVVSSGEDAPPPTKASPVKKKKPAAKRPAPKSDSSDLSDSDGDSDFASRKKKTAAAKKAK 1000
M G PPT+ VK + K+DS + + D D + + + KA
Sbjct: 1223 MPSPFGRRVDPPTQT--VKSESAKKLTKKKKADSDSVVKLELDDDGGGTVENSVSKPKAP 1280
Query: 1001 PAKKE 1005
KKE
Sbjct: 1281 RVKKE 1285
>gi|449491151|ref|XP_002193920.2| PREDICTED: DNA topoisomerase 2-alpha [Taeniopygia guttata]
Length = 1541
Score = 799 bits (2063), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/649 (61%), Positives = 469/649 (72%), Gaps = 107/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
K++VE IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + E + R++T+VPGLYKIF
Sbjct: 27 KLTVEHIYQKKTQLEHILLRPDTYIGSVELVTQQMWVFD-EGVGLNCRDVTFVPGLYKIF 85
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRD M+CIK+T++ E NTISVWNNGKGIPVVEHK EK++VP MI
Sbjct: 86 DEILVNAADNKQRDKNMSCIKVTIDVENNTISVWNNGKGIPVVEHKVEKVYVPAMI---- 141
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
FG LLTSSNY+D E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 142 ---------------------FGQLLTSSNYDDNEKKVTGGRNGYGAKLCNIFSTKFTVE 180
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T C EYKK FKQ W DNM K ++K DD+T +TF PDL+KFKMT LDKD+V L++
Sbjct: 181 TGCREYKKLFKQTWTDNMGKAGEMKLKYFDGDDYTCVTFQPDLSKFKMTVLDKDIVALMS 240
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG++LPVK F+ YV LY D+ DE G+ +K+I+E VN RWEV
Sbjct: 241 RRAYDIAGSTKDVKVFLNGQRLPVKGFRSYVDLYLKDKVDETGNALKVIHEEVNSRWEVC 300
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQVSFVNSIATTKGGRHVD V D +V ++I+VVKKKNK+
Sbjct: 301 LTLSEKGFQQVSFVNSIATTKGGRHVDYVADQLVTKLIDVVKKKNKN------------- 347
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
G+ +KPFQVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 348 ----------------------GVGVKPFQVKNHMWIFVNALIENPTFDSQTKENMTLQS 385
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
+FGSTC VPKL+DAN
Sbjct: 386 KNFGSTCKLSEKFIKGAVGCGIVESILNWVKFKAQNQLNKKCSAVKHSKIKGVPKLDDAN 445
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG+KNS+DCTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 446 DAGSKNSLDCTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENA 505
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y E +K+LRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 506 EINNIIKIVGLQYKKNYEDQESLKSLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 565
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
R FLEEFITPIIKA+K +EE++FYS+PEFEEWK T N++++KIKYYK
Sbjct: 566 RHNFLEEFITPIIKASKNKEEIAFYSIPEFEEWKASTQNYNSWKIKYYK 614
Score = 157 bits (398), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 71/115 (61%), Positives = 92/115 (80%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWY+PIIPMVLVNGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 835 RVEPEWYMPIIPMVLVNGAEGIGTGWACKIPNFDIREVVNNIRRLMDGEEPLPMLPSYKN 894
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG ID G +++V++GE++ILD +EITEL V WT YK+ L+ +L+G EK
Sbjct: 895 FKGTIDELGPNQYVISGEVSILDSTTIEITELPVRTWTQTYKEQVLEPMLNGTEK 949
Score = 65.5 bits (158), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 40/54 (74%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
D++YLL M W LT E+K+EL K+RD+K EL LK+K+P+DLW +DL A E+
Sbjct: 1117 DFNYLLNMPLWYLTKEKKDELCKQRDNKEKELETLKRKSPSDLWKEDLAAFIEE 1170
>gi|327275489|ref|XP_003222506.1| PREDICTED: DNA topoisomerase 2-alpha-like [Anolis carolinensis]
Length = 1559
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/671 (59%), Positives = 475/671 (70%), Gaps = 113/671 (16%)
Query: 7 DFDPDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLM 66
D +P V + N S K+ +SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+
Sbjct: 14 DVNPKVDKIKNEDSKKR------LSVERIYQKKTQLEHILLRPDTYIGSVEQVTQQMWVF 67
Query: 67 NRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGK 126
+ E + R++T+VPGLYKIFDEILVNA DNKQRD KM+CIKIT++ E NT+SVWNNGK
Sbjct: 68 DEEIG-LNCRDVTFVPGLYKIFDEILVNAADNKQRDKKMSCIKITIDPENNTVSVWNNGK 126
Query: 127 GIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKV 186
GIPVVEHK EK++VP +IF G LLTSSNY+D+E KV
Sbjct: 127 GIPVVEHKVEKVYVPALIF-------------------------GQLLTSSNYDDDEKKV 161
Query: 187 TGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKIT 246
TGGRNGYGAKLCNIFS+KF VET+C EYKK F+Q W +NM K ++K +DFT IT
Sbjct: 162 TGGRNGYGAKLCNIFSTKFTVETACREYKKRFQQTWSNNMGKAGEMKLKYFDGEDFTCIT 221
Query: 247 FTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DR 305
F PDL KFKMT+LDKD+V L++RRAYD A ++ V VFLNG KLPV+ F+ YV LY D+
Sbjct: 222 FQPDLAKFKMTTLDKDIVALMSRRAYDIAGASNGVTVFLNGNKLPVRGFRSYVDLYIKDK 281
Query: 306 QDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQII 365
DE G+ +KII+E VN RWEV + S++GFQQVSFVNSIATTKGGRHVD V D IV ++I
Sbjct: 282 VDETGNLLKIIHEEVNSRWEVCLTMSEKGFQQVSFVNSIATTKGGRHVDYVADQIVNKLI 341
Query: 366 EVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIF 425
+VVK++NK GG+A+KPFQVKNH+WIF
Sbjct: 342 DVVKRRNK-----------------------------------GGVAVKPFQVKNHMWIF 366
Query: 426 INCLIVNPTFDSQTKENMTLQKGSFGSTC------------------------------- 454
INCLI NPTFDSQTKENMTLQ SFGSTC
Sbjct: 367 INCLIENPTFDSQTKENMTLQAKSFGSTCKLSEKFIKGAVSCGIVENILNWVKFKAQNQL 426
Query: 455 --------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGV 500
+PKL+DANDAG+KNSI+CTLILTEGDSAK+LAVSGLGVVGRD+YGV
Sbjct: 427 NKKCSAVKHTRIKGIPKLDDANDAGSKNSINCTLILTEGDSAKTLAVSGLGVVGRDRYGV 486
Query: 501 FPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQD 560
FPLRGK+LNVREA+HKQI+ENAEINN++KI+GLQY K Y E ++TLRYG++MIMTDQD
Sbjct: 487 FPLRGKMLNVREASHKQIMENAEINNIIKIVGLQYKKTYDDEESLRTLRYGKIMIMTDQD 546
Query: 561 QDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETT 620
QDGSHIKGL+INFIHHNWP+LLR FLEEFITPI+K +K +EE+SFYS+PEFEEWK +
Sbjct: 547 QDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKEEISFYSIPEFEEWKSSNS 606
Query: 621 NWHTYKIKYYK 631
N+ +K KYYK
Sbjct: 607 NYRNWKTKYYK 617
Score = 161 bits (407), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 99/130 (76%), Gaps = 5/130 (3%)
Query: 648 VTSDSISMFI----GRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRM 703
V D++ F+ R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN++ RE+V+NI+RM
Sbjct: 823 VLDDNVLKFLFDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNYDVREVVNNIRRM 882
Query: 704 IRGEDPLPMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-T 762
+ G++PLPM P YKNFKG ID G +++VVNGE++I+D +EI+EL V WT YK+
Sbjct: 883 LDGDEPLPMMPNYKNFKGTIDSVGQNQYVVNGEVSIIDSTTIEISELPVRTWTQVYKEQV 942
Query: 763 LDTLLHGAEK 772
L+ +L+G EK
Sbjct: 943 LEPMLNGTEK 952
Score = 65.1 bits (157), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 825 RQERQAAEGEDDEAGSQTQEEEDPDK----DYDYLLGMTFWSLTMERKNELLKKRDDKMT 880
++ +Q +D ++++E +PD D+ YLL M W LT E+K+EL K+RDDK T
Sbjct: 1094 KESQQKGSDDDSNEEGESEKENEPDASTGPDFGYLLNMPLWYLTKEKKDELCKQRDDKET 1153
Query: 881 ELNILKKKAPTDLWSDDLDALRE 903
EL LK+K+P DLW DL E
Sbjct: 1154 ELETLKRKSPDDLWRHDLAVFVE 1176
>gi|111305596|gb|AAI21351.1| LOC779457 protein [Xenopus (Silurana) tropicalis]
Length = 757
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/658 (60%), Positives = 466/658 (70%), Gaps = 107/658 (16%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
S K + KMSVE++YQKK+QLEHILLRPDTYIGSVE +T++MW+ + + M R+IT
Sbjct: 36 SNNKNDSSKKMSVERVYQKKTQLEHILLRPDTYIGSVETVTQSMWVYDEDVG-MNCRDIT 94
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
YVPGLYKIFDEILVNA DNKQRD MNCIKI+++ ++N IS+WNNGKGIPVVEHK EKM+
Sbjct: 95 YVPGLYKIFDEILVNAADNKQRDKNMNCIKISIDPDSNIISIWNNGKGIPVVEHKVEKMY 154
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCN 199
VP +IF G LLTSSNY+DEE KVTGGRNGYGAKLCN
Sbjct: 155 VPALIF-------------------------GQLLTSSNYDDEEKKVTGGRNGYGAKLCN 189
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSL 259
IFS+KF VET+C EYK SFKQ W +NM K T P+IK DD+T ITF PDL KF+M L
Sbjct: 190 IFSTKFTVETACKEYKHSFKQTWTNNMLKTTEPKIKHFDGDDYTCITFQPDLAKFQMEKL 249
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYE 318
DKD V L+TRRAYD A S K VKV LNG+KLPV F+ YV LY DR DE G +K+I+E
Sbjct: 250 DKDTVALLTRRAYDIAGSCKGVKVLLNGKKLPVNGFRSYVDLYVKDRLDETGVALKVIHE 309
Query: 319 NVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCT 378
N RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD IV ++IEVVKKKNK
Sbjct: 310 VANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQIVSKLIEVVKKKNK----- 364
Query: 379 IIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQ 438
G+++KPFQVKNH+W+F+NCLI NPTFDSQ
Sbjct: 365 ------------------------------AGVSVKPFQVKNHVWVFVNCLIENPTFDSQ 394
Query: 439 TKENMTLQKGSFGSTC-------------------------------------------- 454
TKENMTLQ FGS C
Sbjct: 395 TKENMTLQPKGFGSKCQLSEKFSKAASNCGIVESILNWVKFKAQTQLNKKCSSVKHSKIK 454
Query: 455 -VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREA 513
+PKL+DANDAG K+S+DCTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA
Sbjct: 455 GIPKLDDANDAGGKHSLDCTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREA 514
Query: 514 THKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINF 573
+HKQI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INF
Sbjct: 515 SHKQIMENAEINNIIKIVGLQYKKSYDDNESLKTLRYGKIMIMTDQDQDGSHIKGLLINF 574
Query: 574 IHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
HHNWP+LL+ FLEEFITPI+KATK ++ELSFYS+PEFEEWK++T N +KIKYYK
Sbjct: 575 FHHNWPSLLKHSFLEEFITPIVKATKNKQELSFYSIPEFEEWKKQTENQKLWKIKYYK 632
>gi|426237937|ref|XP_004012914.1| PREDICTED: DNA topoisomerase 2-alpha [Ovis aries]
Length = 1530
Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/667 (59%), Positives = 472/667 (70%), Gaps = 108/667 (16%)
Query: 12 VQQNGNGPSPKKKTPANK-MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRET 70
V +N KK A K +SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + +T
Sbjct: 9 VNENMQVSKTKKNEDAKKRLSVERIYQKKTQLEHILLRPDTYIGSVESVTQQMWVYDEDT 68
Query: 71 NHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPV 130
+ RE+TYVPGLYKIFDEILVNA DNKQRDPKM+CI+IT++ E N IS+WNNGKGIPV
Sbjct: 69 G-INYREVTYVPGLYKIFDEILVNAADNKQRDPKMSCIRITIDPENNLISIWNNGKGIPV 127
Query: 131 VEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGR 190
VEHK EKM+VP +IF G LLTSSNY+DEE KVTGGR
Sbjct: 128 VEHKVEKMYVPALIF-------------------------GQLLTSSNYDDEEKKVTGGR 162
Query: 191 NGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPD 250
NGYGAKLCNIFS+KF VET+ EYKK FKQ W DNM K E+K S +D+T ITF PD
Sbjct: 163 NGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGKAGEMELKPFSGEDYTCITFHPD 222
Query: 251 LTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDED 309
L+KFKM SLDKD+V L+ RRAYD A STKDVKV+LNG +LPVK F+ YV LY D+ DE
Sbjct: 223 LSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVYLNGNRLPVKGFRSYVDLYLKDKVDET 282
Query: 310 GDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVK 369
G+P+KII+E VN RWEV + S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVK
Sbjct: 283 GNPLKIIHEQVNHRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVK 342
Query: 370 KKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCL 429
KKNK GG+A+K QVKNH+WIF+N L
Sbjct: 343 KKNK-----------------------------------GGVAVKAHQVKNHMWIFVNAL 367
Query: 430 IVNPTFDSQTKENMTLQKGSFGSTC----------------------------------- 454
I NPTFDSQTKENMTLQ SFGSTC
Sbjct: 368 IENPTFDSQTKENMTLQVKSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQIQLNKKC 427
Query: 455 ----------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLR 504
+PKL+DANDAG +NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLR
Sbjct: 428 SAVKHNRIKGIPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLR 487
Query: 505 GKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGS 564
GK+LNVREA+HKQI+ENAEINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGS
Sbjct: 488 GKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGS 547
Query: 565 HIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHT 624
HIKGL+INFIHHNWP+LLR FLEEFITPI+K +K ++E++FYSLPEFEEWK T N
Sbjct: 548 HIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKK 607
Query: 625 YKIKYYK 631
+K+KYYK
Sbjct: 608 WKVKYYK 614
Score = 152 bits (385), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 835 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLMDGEEPLPMLPSYKN 894
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V++GE+AIL+ +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 895 FKGTIEELAPNQYVISGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 949
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL K R++K EL LK+K+P+DLW +DL A E
Sbjct: 1125 FNYLLDMPLWYLTKEKKDELCKLRNEKEQELETLKRKSPSDLWKEDLAAFVE 1176
>gi|113681126|ref|NP_001038656.1| DNA topoisomerase 2-beta [Danio rerio]
Length = 1618
Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/669 (59%), Positives = 469/669 (70%), Gaps = 111/669 (16%)
Query: 13 QQNGNGPSPK----KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNR 68
+ NG G + K KK + KMSVE+IYQKK+QLEHILLRPDTYIGSVEP+T+ MW+ +
Sbjct: 27 EMNGRGDAGKSEVVKKESSKKMSVERIYQKKTQLEHILLRPDTYIGSVEPVTQQMWVFDE 86
Query: 69 ETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGI 128
E M REI++VPGLYKIFDEILVNA DNKQRD M IKIT++ E+NTISVWNNGKGI
Sbjct: 87 EIG-MNLREISFVPGLYKIFDEILVNAADNKQRDKNMTTIKITIDPESNTISVWNNGKGI 145
Query: 129 PVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTG 188
PVVEHKDEKM+VP +IF GHLLTSSNY+D E KVTG
Sbjct: 146 PVVEHKDEKMYVPALIF-------------------------GHLLTSSNYDDNEKKVTG 180
Query: 189 GRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFT 248
GRNGYGAKLCNIFS KF VET+C EYK+SFKQ W +NM K +IK +DFT +TF
Sbjct: 181 GRNGYGAKLCNIFSLKFTVETACKEYKRSFKQTWTENMGKSNEAKIKYFDGEDFTCVTFQ 240
Query: 249 PDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQD 307
PDL KF M LDKD+V L+TRRAYD A S + VKV LNG+KLPV +F+ YV Y D+ D
Sbjct: 241 PDLAKFNMEKLDKDIVALLTRRAYDVAGSCRGVKVILNGKKLPVNSFRSYVDFYVKDKLD 300
Query: 308 EDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEV 367
E G +K++ E VN RWEV + S++GFQQ+SFVNSIATTKGGRH+D +VD IV ++IEV
Sbjct: 301 ETGVALKVVNETVNERWEVCLTMSEKGFQQISFVNSIATTKGGRHIDYIVDQIVGKLIEV 360
Query: 368 VKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFIN 427
VKKKNK G+++KPFQVKNH+W+F+N
Sbjct: 361 VKKKNK-----------------------------------AGVSVKPFQVKNHLWVFVN 385
Query: 428 CLIVNPTFDSQTKENMTLQKGSFGSTC--------------------------------- 454
LI NPTFDSQTKENMTLQ SFGS C
Sbjct: 386 ALIENPTFDSQTKENMTLQTKSFGSKCALSEKFIRAATNCGIVESILNWVKFKAQTQLNK 445
Query: 455 ------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFP 502
+PKL+DANDAG K+S +CTLILTEGDSAKSLAVSGLGV+GRD+YGVFP
Sbjct: 446 KCSSVKHSKIKGIPKLDDANDAGGKHSSECTLILTEGDSAKSLAVSGLGVIGRDRYGVFP 505
Query: 503 LRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQD 562
LRGK+LNVREATHKQI+ENAEINN++KILGLQY K Y E +K+LRYGR+MIMTDQDQD
Sbjct: 506 LRGKILNVREATHKQIMENAEINNIIKILGLQYKKSYDDPESLKSLRYGRIMIMTDQDQD 565
Query: 563 GSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNW 622
GSHIKGL+INF HHNWP+LL+ FLEEFITPI+KA+K ++E+SFYS+PEFEEWK+ T ++
Sbjct: 566 GSHIKGLLINFFHHNWPSLLKHTFLEEFITPIVKASKNKQEVSFYSIPEFEEWKKHTESY 625
Query: 623 HTYKIKYYK 631
T+ IKYYK
Sbjct: 626 KTWHIKYYK 634
Score = 157 bits (397), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 92/115 (80%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
++EPEWYIPIIPMVLVNGAEGIGTGW KIPN++PREIV+NI RM+ +DPLPM P YKN
Sbjct: 855 KVEPEWYIPIIPMVLVNGAEGIGTGWACKIPNYDPREIVNNINRMLNHQDPLPMLPSYKN 914
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
FKG I G ++++V+GE+++LD + +EI+EL V WT YK++ L+ +L G +K
Sbjct: 915 FKGTIHELGQNQYLVSGEVSVLDKNTIEISELPVRTWTQAYKESVLEPMLQGTDK 969
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
+++Y+L M W LT E+ ELLK+RD K ELN L+ K +LW +DL E
Sbjct: 1141 NFNYILNMPLWCLTKEKVEELLKQRDLKKAELNELQSKTSENLWREDLAVFIE 1193
>gi|28277299|gb|AAH44276.1| LOC398512 protein [Xenopus laevis]
Length = 1132
Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/664 (59%), Positives = 475/664 (71%), Gaps = 107/664 (16%)
Query: 14 QNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHM 73
+N KK+ ++SVE+IYQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + E +
Sbjct: 10 ENKTAVGKVKKSDNKRLSVERIYQKKTQLEHILLRPDTYIGSVEPVTQQMWVFD-EDEGL 68
Query: 74 ERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEH 133
R+IT+VPGLYKIFDEILVNA DNKQRDP M+CIKIT++ + NTISVWNNGKGIPVVEH
Sbjct: 69 NCRDITFVPGLYKIFDEILVNAADNKQRDPTMSCIKITIDPDNNTISVWNNGKGIPVVEH 128
Query: 134 KDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGY 193
K EK++VP +IF G LLTSSNY+D++ KVTGGRNGY
Sbjct: 129 KVEKVYVPALIF-------------------------GQLLTSSNYDDDQKKVTGGRNGY 163
Query: 194 GAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTK 253
GAKLCNIFS+KF VET+C EYKK FKQ W +NMS P+IK +DFT ITF PDL+K
Sbjct: 164 GAKLCNIFSNKFTVETACREYKKIFKQTWTNNMSNAPDPKIKPFEGEDFTCITFQPDLSK 223
Query: 254 FKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDP 312
FKM LDKD+V L++RRAYD A S+K VKVFLNG++LPV F+ YV++Y D+ DE G+P
Sbjct: 224 FKMQILDKDIVALMSRRAYDVAGSSKGVKVFLNGKRLPVSGFRTYVEMYLKDKLDETGNP 283
Query: 313 VKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKN 372
K+++E VN RWEV + S++GFQQ+SFVNSIATTKGGRHVD V D IV ++I+VVKKKN
Sbjct: 284 FKVMHEQVNDRWEVCLTMSEKGFQQISFVNSIATTKGGRHVDYVADQIVTKLIDVVKKKN 343
Query: 373 KDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVN 432
K GG+++KPFQVKNH+W+F+N LI N
Sbjct: 344 K-----------------------------------GGISVKPFQVKNHMWVFVNALIEN 368
Query: 433 PTFDSQTKENMTLQKGSFGSTC-------------------------------------- 454
PTFDSQTKENMTLQ SFGS C
Sbjct: 369 PTFDSQTKENMTLQSKSFGSKCTLSEKFIKGATSCGIVESILNWVKFKAQTQLNKKCSAV 428
Query: 455 -------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKL 507
+PKL+DANDAG++NS++CTLILTEGDSAK+LAVSGLGVVGRD+YGVFPLRGKL
Sbjct: 429 KHTKIKGIPKLDDANDAGSRNSLECTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLRGKL 488
Query: 508 LNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIK 567
LNVREA+HKQI+ENAEINN++KI+GLQY K Y E ++TLRYG++MIMTDQDQDGSHIK
Sbjct: 489 LNVREASHKQIMENAEINNIIKIVGLQYKKNYDDNESLRTLRYGKIMIMTDQDQDGSHIK 548
Query: 568 GLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKI 627
GL+INFIHHNWP+LL+ FLEEFITPIIK TK ++ELSFYS+PEFEEWK T + T+KI
Sbjct: 549 GLLINFIHHNWPSLLKHCFLEEFITPIIKVTKNKQELSFYSIPEFEEWKNNTESHKTWKI 608
Query: 628 KYYK 631
KYYK
Sbjct: 609 KYYK 612
Score = 148 bits (374), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
++EPEWYIPIIPMVLVNGAEGIGTGW K+PN++ REIV+NI+RM+ G++P M P YKN
Sbjct: 833 KVEPEWYIPIIPMVLVNGAEGIGTGWSCKLPNYDTREIVNNIRRMLDGDEPQQMLPSYKN 892
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G ++F++NGE+++LD +EI+EL WT +YK+ L+ +L+G EK
Sbjct: 893 FKGVIQELGPNQFILNGEVSVLDSTTIEISELPARTWTQNYKEQVLEPMLNGTEK 947
>gi|345317767|ref|XP_001519680.2| PREDICTED: DNA topoisomerase 2-alpha, partial [Ornithorhynchus
anatinus]
Length = 1764
Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/660 (59%), Positives = 470/660 (71%), Gaps = 107/660 (16%)
Query: 18 GPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERRE 77
G K + ++SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + R+
Sbjct: 261 GKIKKDEAAKKRLSVERIYQKKTQLEHILLRPDTYIGSVELLTQQMWVFDEDAG-LNCRD 319
Query: 78 ITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEK 137
+T+VPGLYKIFDEILVNA DNKQRD KM+CIK+T++ E NTISVWNNGKGIPVVEHK EK
Sbjct: 320 VTFVPGLYKIFDEILVNAADNKQRDNKMSCIKVTIDPENNTISVWNNGKGIPVVEHKVEK 379
Query: 138 MFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKL 197
++VP +IF G LLTSSNY+D+E KVTGGRNGYGAKL
Sbjct: 380 VYVPALIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKL 414
Query: 198 CNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMT 257
CNIFS+KF VET+ EY+K FKQ W DNM K ++K +D+T ITF PDL KFKMT
Sbjct: 415 CNIFSTKFTVETASREYRKLFKQTWTDNMGKAGEMKLKPFDGEDYTCITFQPDLAKFKMT 474
Query: 258 SLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKII 316
SLDKD+V L++RRAYD A STKDVKVFLNG++LPVK F+ YV LY D+ DE G+P+K+I
Sbjct: 475 SLDKDIVALMSRRAYDIAGSTKDVKVFLNGKRLPVKGFRGYVDLYVKDKVDETGNPLKVI 534
Query: 317 YENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLG 376
+E VN RWEV + S++GFQQVSFVNSIAT+KGGRHVD V D I+ ++IEVVKKKNK
Sbjct: 535 HEEVNSRWEVCLTMSEKGFQQVSFVNSIATSKGGRHVDYVADQIISKLIEVVKKKNK--- 591
Query: 377 CTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFD 436
GG+A+KP QVKNH+WIF+N LI NPTFD
Sbjct: 592 --------------------------------GGVAVKPHQVKNHMWIFVNSLIENPTFD 619
Query: 437 SQTKENMTLQKGSFGSTC------------------------------------------ 454
SQTKENMTLQ SFGS C
Sbjct: 620 SQTKENMTLQAKSFGSKCQLSEKFIKAAASCGVVESILNWVKFKAQIQLNKKCSAVKHNR 679
Query: 455 ---VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVR 511
+PKL+DANDAG+KNS DCTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVR
Sbjct: 680 IKGIPKLDDANDAGSKNSTDCTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKMLNVR 739
Query: 512 EATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLII 571
EA+HKQI+ENAEINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+I
Sbjct: 740 EASHKQIMENAEINNIIKIVGLQYKKNYDDQDSLKTLRYGKIMIMTDQDQDGSHIKGLLI 799
Query: 572 NFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NFIHHNWP+LLR FLEEFITPI+K ++ ++E+SFYSLPEFEEWK T + +K+KYYK
Sbjct: 800 NFIHHNWPSLLRHRFLEEFITPIVKVSRNKQEMSFYSLPEFEEWKNSTGDHKKWKVKYYK 859
Score = 158 bits (399), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 70/115 (60%), Positives = 92/115 (80%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPI+PMVLVNGAEGIGTGW K+PN++ RE+V+NI+RM+ GE+PLPM P YKN
Sbjct: 1080 RVEPEWYIPIVPMVLVNGAEGIGTGWSCKLPNYDVREVVNNIRRMMDGEEPLPMLPSYKN 1139
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG ID +++V+NGE++ILD +EI+EL V WT YK+ L+ +L+G EK
Sbjct: 1140 FKGTIDELAPNQYVINGEVSILDSTTIEISELPVRTWTQVYKEQVLEPMLNGTEK 1194
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 87/202 (43%), Gaps = 55/202 (27%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL--------- 901
D++YLL M W LT E+K+EL ++RD+K EL LK+K+P DLW +DL A
Sbjct: 1369 DFNYLLEMPLWYLTKEKKDELCRQRDNKTQELETLKRKSPADLWKEDLAAFVEELEAVET 1428
Query: 902 REKDKIHPCPGGNRTRGLALK-RQTRY-----QPSNRVLTSR------------------ 937
REK G T+G LK ++T+ P R + R
Sbjct: 1429 REKQDEQAGLSGKATKGGKLKVKKTQLAEILPSPHGRRVIPRVTIEMKAEAEKKIKKKVK 1488
Query: 938 DEPMVVSSGEDAPPPTKASPVKKKKPA-------------------AKRPAPKSDS-SDL 977
E SS ED P + ++KK + K+ P SDS SDL
Sbjct: 1489 SETSAGSSPEDKEPLSLKQRLEKKFKSDTGTKGKKQNTLLSKRVKKEKKRNPWSDSESDL 1548
Query: 978 SDSDGDSDFASR--KKKTAAAK 997
S D D D A R K + AAAK
Sbjct: 1549 SCDDSDIDVAPRETKPRRAAAK 1570
>gi|358417405|ref|XP_001254458.3| PREDICTED: DNA topoisomerase 2-alpha [Bos taurus]
gi|359076890|ref|XP_002696055.2| PREDICTED: DNA topoisomerase 2-alpha [Bos taurus]
Length = 1530
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/667 (59%), Positives = 471/667 (70%), Gaps = 108/667 (16%)
Query: 12 VQQNGNGPSPKKKTPANK-MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRET 70
V +N KK A K +S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + +
Sbjct: 9 VNENMQVSKTKKNEDAKKRLSIERIYQKKTQLEHILLRPDTYIGSVESVTQQMWVYDEDI 68
Query: 71 NHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPV 130
+ RE+TYVPGLYKIFDEILVNA DNKQRDPKM+CI+IT++ E N IS+WNNGKGIPV
Sbjct: 69 G-INYREVTYVPGLYKIFDEILVNAADNKQRDPKMSCIRITIDPENNLISIWNNGKGIPV 127
Query: 131 VEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGR 190
VEHK EKM+VP +IF G LLTSSNY+DEE KVTGGR
Sbjct: 128 VEHKVEKMYVPALIF-------------------------GQLLTSSNYDDEEKKVTGGR 162
Query: 191 NGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPD 250
NGYGAKLCNIFS+KF VET+ EYKK FKQ W DNM K E+K S +D+T ITF PD
Sbjct: 163 NGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGKAGEMELKPFSGEDYTCITFHPD 222
Query: 251 LTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDED 309
L+KFKM SLDKD+V L+ RRAYD A STKDVKV+LNG +LPVK F+ YV LY D+ DE
Sbjct: 223 LSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVYLNGNRLPVKGFRSYVDLYLKDKVDET 282
Query: 310 GDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVK 369
G+P+K+I+E VN RWEV + S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVK
Sbjct: 283 GNPLKVIHEQVNHRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVK 342
Query: 370 KKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCL 429
KKNK GG+A+K QVKNH+WIF+N L
Sbjct: 343 KKNK-----------------------------------GGVAVKAHQVKNHMWIFVNAL 367
Query: 430 IVNPTFDSQTKENMTLQKGSFGSTC----------------------------------- 454
I NPTFDSQTKENMTLQ SFGSTC
Sbjct: 368 IENPTFDSQTKENMTLQVKSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQIQLNKKC 427
Query: 455 ----------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLR 504
+PKL+DANDAG +NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLR
Sbjct: 428 SAVKHNRIKGIPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLR 487
Query: 505 GKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGS 564
GK+LNVREA+HKQI+ENAEINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGS
Sbjct: 488 GKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGS 547
Query: 565 HIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHT 624
HIKGL+INFIHHNWP+LLR FLEEFITPI+K +K ++E++FYSLPEFEEWK T N
Sbjct: 548 HIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKK 607
Query: 625 YKIKYYK 631
+K+KYYK
Sbjct: 608 WKVKYYK 614
Score = 152 bits (383), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 835 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLMDGEEPLPMLPSYKN 894
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG ++ +++V++GE+AIL+ +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 895 FKGTVEELAPNQYVISGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 949
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL K R++K EL LK+K+P+DLW +DL A E
Sbjct: 1125 FNYLLDMPLWYLTKEKKDELCKLRNEKEQELETLKRKSPSDLWKEDLAAFVE 1176
>gi|45384180|ref|NP_990413.1| DNA topoisomerase 2-beta [Gallus gallus]
gi|3122959|sp|O42131.1|TOP2B_CHICK RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
topoisomerase II, beta isozyme
gi|2463529|dbj|BAA22540.1| DNA topoisomeraseII_beta [Gallus gallus]
Length = 1627
Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/658 (59%), Positives = 469/658 (71%), Gaps = 107/658 (16%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
S K + KMSVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T
Sbjct: 44 SVNKNDTSKKMSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVT 102
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
+VPGLYKIFDEILVNA DNKQRD M CIKI+++ E+N IS+WNNGKGIPVVEHK EK++
Sbjct: 103 FVPGLYKIFDEILVNAADNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEHKVEKVY 162
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCN 199
VP +IF G LLTSSNY+D+E KVTGGRNGYGAKLCN
Sbjct: 163 VPALIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCN 197
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSL 259
IFS+KF VET+C EYK SFKQ W +NM K + P+IK DD+T ITF PDL+KFKM +L
Sbjct: 198 IFSTKFTVETACKEYKHSFKQTWMNNMMKTSEPKIKHFEGDDYTCITFQPDLSKFKMENL 257
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYE 318
DKD+V L+TRRAYD A S K VKV LNG+KLPV F+ YV LY D+ DE G +K+I+E
Sbjct: 258 DKDIVSLMTRRAYDLAGSCKGVKVMLNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHE 317
Query: 319 NVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCT 378
VN RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 318 VVNERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK----- 372
Query: 379 IIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQ 438
G+++KPFQVKNHIW+F+NCLI NP+FDSQ
Sbjct: 373 ------------------------------AGVSVKPFQVKNHIWVFVNCLIENPSFDSQ 402
Query: 439 TKENMTLQKGSFGSTC-------------------------------------------- 454
TKENMTLQ SFGS C
Sbjct: 403 TKENMTLQPKSFGSKCQLSEKFFKAASNCGIIESILNWVKFKAQTQLNKKCSSVKHSKIK 462
Query: 455 -VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREA 513
+PKL+DANDAG K+S+DCTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA
Sbjct: 463 GIPKLDDANDAGGKHSLDCTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREA 522
Query: 514 THKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINF 573
+HKQI+ENAEINN++KI+GLQY K Y E +K+LRYG++MIMTDQDQDGSHIKGL+INF
Sbjct: 523 SHKQIMENAEINNIIKIVGLQYKKSYEDPESLKSLRYGKIMIMTDQDQDGSHIKGLLINF 582
Query: 574 IHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
IHHNWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 583 IHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHMENHKAWKIKYYK 640
Score = 152 bits (385), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVLVNGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 861 RVEPEWYIPIIPMVLVNGAEGIGTGWACKLPNYDTREIVNNVRRMLDGLDPHPMLPNYKN 920
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F+G I G +++VV+GEI ++D + +EITEL V WT YK+ L+ +L+G EK
Sbjct: 921 FRGTIQELGQNQYVVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTEK 975
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 38/53 (71%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
D++Y+L M+ WSLT E+ EL+K RD K ELN LK+K+ +DLW +DL A E
Sbjct: 1147 DFNYILNMSLWSLTKEKVEELIKHRDSKERELNDLKRKSASDLWKEDLAAFVE 1199
>gi|153945749|ref|NP_035753.2| DNA topoisomerase 2-alpha [Mus musculus]
gi|363548478|sp|Q01320.2|TOP2A_MOUSE RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
topoisomerase II, alpha isozyme
gi|148684229|gb|EDL16176.1| topoisomerase (DNA) II alpha [Mus musculus]
Length = 1528
Score = 793 bits (2048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/649 (59%), Positives = 465/649 (71%), Gaps = 107/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 26 RLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIF 84
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EK++VP +IF
Sbjct: 85 DEILVNAADNKQRDPKMSCIRVTIDPENNVISIWNNGKGIPVVEHKVEKIYVPALIF--- 141
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 142 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 179
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ EYKK FKQ W DNM + E+K S +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 180 TASREYKKMFKQTWMDNMGRAGDMELKPFSGEDYTCITFQPDLSKFKMQSLDKDIVALMV 239
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG LPVK F+ YV LY D+ DE G+ +K+I+E VNPRWEV
Sbjct: 240 RRAYDIAGSTKDVKVFLNGNSLPVKGFRSYVDLYLKDKVDETGNSLKVIHEQVNPRWEVC 299
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S+RGFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 300 LTMSERGFQQISFVNSIATSKGGRHVDYVADQIVSKLVDVVKKKNK-------------- 345
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 346 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQA 384
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGSTC +PKL+DAN
Sbjct: 385 KSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQIQLNKKCSAVKHTKIKGIPKLDDAN 444
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG++NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 445 DAGSRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENA 504
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 505 EINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 564
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
R FLEEFITPI+K +K ++E++FYSLPEFEEWK T N +K+KYYK
Sbjct: 565 RHRFLEEFITPIVKVSKNKQEIAFYSLPEFEEWKSSTPNHKKWKVKYYK 613
Score = 157 bits (398), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 834 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEEPLPMLPSYKN 893
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V+NGE+AILD +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 894 FKGTIEELASNQYVINGEVAILDSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 948
Score = 61.6 bits (148), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 38/52 (73%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL K+R++K ELN LK+K+P+DLW +DL E
Sbjct: 1122 FNYLLDMPLWYLTKEKKDELCKQRNEKEQELNTLKQKSPSDLWKEDLAVFIE 1173
>gi|344286028|ref|XP_003414761.1| PREDICTED: DNA topoisomerase 2-alpha [Loxodonta africana]
Length = 1532
Score = 793 bits (2047), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/649 (60%), Positives = 464/649 (71%), Gaps = 107/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 27 RLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDIG-INYREVTFVPGLYKIF 85
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 86 DEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIF--- 142
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 143 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ EYKK FKQ W DNM K E+K S +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 181 TASREYKKKFKQTWMDNMGKAGEMELKPFSGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG LPVK F+ YV +Y D+ DE G+P+K+IYE VN RWEV
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNTLPVKGFRSYVDMYLKDKVDETGNPLKVIYEQVNHRWEVC 300
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 301 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNK-------------- 346
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 347 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQV 385
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGSTC +PKL+DAN
Sbjct: 386 KSFGSTCQLSEKFIKAATGCGIVESILNWVKFKAQIQLNKKCSAVKHNRIKGIPKLDDAN 445
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG +NS DCTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 446 DAGGRNSTDCTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENA 505
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 506 EINNIIKIVGLQYKKSYDDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 565
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
R FLEEFITPI+K +K ++E++FYSLPEFEEWK T N +K+KYYK
Sbjct: 566 RHRFLEEFITPIVKVSKNKQEIAFYSLPEFEEWKSSTPNHKKWKVKYYK 614
Score = 153 bits (386), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 835 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLMDGEEPLPMLPSYKN 894
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V++GE+AIL+ +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 895 FKGTIEELASNQYVISGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 949
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL K R++K EL LKKK+P+DLW +DL A E
Sbjct: 1125 FNYLLDMPLWYLTKEKKDELCKLRNEKEQELETLKKKSPSDLWKEDLAAFIE 1176
>gi|224045386|ref|XP_002197470.1| PREDICTED: DNA topoisomerase 2-beta [Taeniopygia guttata]
Length = 1622
Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/658 (59%), Positives = 468/658 (71%), Gaps = 107/658 (16%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
S K + KMSVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T
Sbjct: 39 SINKNDTSKKMSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVT 97
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
+VPGLYKIFDEILVNA DNKQRD M CIKI+++ E+N IS+WNNGKGIPVVEHK EK++
Sbjct: 98 FVPGLYKIFDEILVNAADNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEHKVEKVY 157
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCN 199
VP +IF G LLTSSNY+D+E KVTGGRNGYGAKLCN
Sbjct: 158 VPALIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCN 192
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSL 259
IFS+KF VET+C EYK SFKQ W +NM K + P+IK DD+T ITF PDL+KFKM L
Sbjct: 193 IFSTKFTVETACKEYKHSFKQTWMNNMMKTSEPKIKHFEGDDYTCITFQPDLSKFKMEKL 252
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYE 318
DKD+V L+TRRAYD A S K VKV LNG+KLPV F+ YV LY D+ DE G +K+I+E
Sbjct: 253 DKDIVALMTRRAYDLAGSCKGVKVMLNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHE 312
Query: 319 NVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCT 378
VN RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 313 VVNERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK----- 367
Query: 379 IIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQ 438
G+++KPFQVKNHIW+F+NCLI NP+FDSQ
Sbjct: 368 ------------------------------AGVSVKPFQVKNHIWVFVNCLIENPSFDSQ 397
Query: 439 TKENMTLQKGSFGSTC-------------------------------------------- 454
TKENMTLQ SFGS C
Sbjct: 398 TKENMTLQPKSFGSKCQLSEKFFKAASNCGIIESILNWVKFKAQTQLNKKCSSVKHSKIK 457
Query: 455 -VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREA 513
+PKL+DANDAG K+S+DCTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA
Sbjct: 458 GIPKLDDANDAGGKHSLDCTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREA 517
Query: 514 THKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINF 573
+HKQI+ENAEINN++KI+GLQY K Y E +K+LRYG++MIMTDQDQDGSHIKGL+INF
Sbjct: 518 SHKQIMENAEINNIIKIVGLQYKKSYEDPESLKSLRYGKIMIMTDQDQDGSHIKGLLINF 577
Query: 574 IHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
IHHNWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 578 IHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHMENHKAWKIKYYK 635
Score = 153 bits (387), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/115 (60%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVLVNGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 856 RVEPEWYIPIIPMVLVNGAEGIGTGWACKLPNYDTREIVNNVRRMLDGLDPHPMLPNYKN 915
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++VV+GEI ++D + +EITEL V WT YK+ L+ +L+G EK
Sbjct: 916 FKGTIQELGQNQYVVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTEK 970
Score = 68.6 bits (166), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Query: 831 AEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAP 890
++ +D+A S + PD ++Y+L M+ WSLT E+ EL+K+RD K ELN LK+K+P
Sbjct: 1124 SQNANDDASSASGPASGPD--FNYILNMSLWSLTKEKVEELIKQRDSKERELNDLKRKSP 1181
Query: 891 TDLWSDDLDALRE 903
+DLW +DL A E
Sbjct: 1182 SDLWKEDLAAFVE 1194
>gi|296202778|ref|XP_002748606.1| PREDICTED: DNA topoisomerase 2-alpha [Callithrix jacchus]
Length = 1531
Score = 791 bits (2044), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/649 (59%), Positives = 466/649 (71%), Gaps = 107/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 27 RLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDIG-INYREVTFVPGLYKIF 85
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++TV+ E N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 86 DEILVNAADNKQRDPKMSCIRVTVDPENNLISIWNNGKGIPVVEHKVEKMYVPALIF--- 142
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 143 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+C EYKK FKQ W DNM + E+K S +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 181 TACREYKKMFKQTWMDNMGRAGEMELKPFSGEDYTCITFQPDLSKFKMKSLDKDIVALMV 240
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE G+P+K+I+E VN RWEV
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETGNPLKVIHEQVNHRWEVC 300
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 301 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNK-------------- 346
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 347 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQP 385
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGSTC +PKL+DAN
Sbjct: 386 KSFGSTCHLSEKFIKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDAN 445
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG +NS +CTLILTEGDSAK+LAVSGLGVVGRD+YGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 446 DAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLRGKILNVREASHKQIMENA 505
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 506 EINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 565
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
R FLEEFITPI+K +K ++E++FYSLPEFEEWK T N +K+KYYK
Sbjct: 566 RHRFLEEFITPIVKISKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYK 614
Score = 152 bits (385), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 835 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLMDGEEPLPMLPSYKN 894
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V++GE+AIL+ +EI+EL V WT YK+ L+ +L+G EK
Sbjct: 895 FKGTIEELAPNQYVISGEVAILNSTTIEISELPVRTWTQTYKEQVLEPMLNGTEK 949
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 38/52 (73%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL + R++K EL+ LK+K+P+DLW +DL A E
Sbjct: 1125 FNYLLDMPLWYLTKEKKDELCRLRNEKEQELDTLKRKSPSDLWKEDLAAFVE 1176
>gi|73966009|ref|XP_537646.2| PREDICTED: DNA topoisomerase 2-alpha isoform 1 [Canis lupus
familiaris]
Length = 1532
Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/667 (59%), Positives = 472/667 (70%), Gaps = 108/667 (16%)
Query: 12 VQQNGNGPSPKKKTPANK-MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRET 70
V +N KK A K +S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + +
Sbjct: 9 VNENMQISKTKKNEDAKKRLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDI 68
Query: 71 NHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPV 130
M RE+T+VPGLYKIFDEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPV
Sbjct: 69 G-MNYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPV 127
Query: 131 VEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGR 190
VEHK EKM+VP +IF G LLTSSNY+D+E KVTGGR
Sbjct: 128 VEHKVEKMYVPALIF-------------------------GQLLTSSNYDDDEKKVTGGR 162
Query: 191 NGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPD 250
NGYGAKLCNIFS+KF VET+ EYKK FKQ W DNM + E++ + +D+T ITF PD
Sbjct: 163 NGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELRPFNGEDYTCITFQPD 222
Query: 251 LTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDED 309
L+KFKM SLDKD+V L+ RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE
Sbjct: 223 LSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKVDET 282
Query: 310 GDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVK 369
G+P+KII+E VNPRWEV + S++GFQQ+SFVNSIAT+KGGRHVD + D IV ++++VVK
Sbjct: 283 GNPLKIIHEQVNPRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYIADQIVTKLVDVVK 342
Query: 370 KKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCL 429
KKNK GG+A+K QVKNH+WIF+N L
Sbjct: 343 KKNK-----------------------------------GGVAVKAHQVKNHMWIFVNAL 367
Query: 430 IVNPTFDSQTKENMTLQKGSFGSTC----------------------------------- 454
I NPTFDSQTKENMTLQ SFGSTC
Sbjct: 368 IENPTFDSQTKENMTLQVKSFGSTCQLSEKFIKAATGCGIVESILNWVKFKAQIQLNKKC 427
Query: 455 ----------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLR 504
+PKL+DANDAG +NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLR
Sbjct: 428 SAVKHNRIKGIPKLDDANDAGGRNSNECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLR 487
Query: 505 GKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGS 564
GK+LNVREA+HKQI+ENAEINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGS
Sbjct: 488 GKILNVREASHKQIMENAEINNIIKIVGLQYKKNYDDEDSLKTLRYGKIMIMTDQDQDGS 547
Query: 565 HIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHT 624
HIKGL+INFIHHNWP+LLR FLEEFITPI+K +K ++E++FYSLPEFEEWK T N
Sbjct: 548 HIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKK 607
Query: 625 YKIKYYK 631
+K+KYYK
Sbjct: 608 WKVKYYK 614
Score = 151 bits (382), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 835 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRLMDGEEPLPMLPSYKN 894
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F+G I+ +++V++GE+AIL+ +EI+EL V WT YK+ L+ +L+G EK
Sbjct: 895 FRGTIEELAPNQYVISGEVAILNSTTIEISELPVRTWTQTYKEQVLEPMLNGTEK 949
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 36/52 (69%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL K R++K EL LK+K+PTDLW +DL E
Sbjct: 1125 FNYLLDMPLWYLTKEKKDELCKLRNEKEQELETLKRKSPTDLWKEDLATFVE 1176
>gi|410981039|ref|XP_003996880.1| PREDICTED: DNA topoisomerase 2-alpha [Felis catus]
Length = 1534
Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/649 (59%), Positives = 466/649 (71%), Gaps = 107/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 27 RLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDIG-INYREVTFVPGLYKIF 85
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 86 DEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIF--- 142
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 143 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ EYKK FKQ W DNM + E+K + +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE G+P+KII+E VNPRWEV
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKVDETGNPLKIIHEQVNPRWEVC 300
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD + D IV +++EVVKKKNK
Sbjct: 301 LTMSEKGFQQISFVNSIATSKGGRHVDYIADQIVTKLVEVVKKKNK-------------- 346
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 347 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQV 385
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGSTC +PKL+DAN
Sbjct: 386 KSFGSTCHLSEKFIKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDAN 445
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG +NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 446 DAGGRNSNECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENA 505
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 506 EINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 565
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
R FLEEFITPI+K +K ++E++FYSLPEFEEWK T N +K+KYYK
Sbjct: 566 RHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYK 614
Score = 151 bits (381), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 835 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRLMDGEEPLPMLPSYKN 894
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F+G I+ +++V++GE+AIL+ +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 895 FRGTIEELAPNQYVISGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 949
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL K R++K EL LK+K+P+DLW +DL A E
Sbjct: 1125 FNYLLDMPLWYLTKEKKDELCKLRNEKEQELETLKRKSPSDLWKEDLAAFIE 1176
>gi|350537403|ref|NP_001233667.1| DNA topoisomerase 2-alpha [Cricetulus griseus]
gi|1174741|sp|P41515.1|TOP2A_CRIGR RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
topoisomerase II, alpha isozyme
gi|191218|gb|AAA37023.1| DNA topoisomerase II [Cricetulus griseus]
gi|344256934|gb|EGW13038.1| DNA topoisomerase 2-alpha [Cricetulus griseus]
Length = 1526
Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/666 (58%), Positives = 471/666 (70%), Gaps = 107/666 (16%)
Query: 12 VQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETN 71
V +N K + ++S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + +
Sbjct: 9 VNENMQMNKKKNEDAKKRLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG 68
Query: 72 HMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVV 131
+ RE+T+VPGLYKIFDEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVV
Sbjct: 69 -INYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVV 127
Query: 132 EHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRN 191
EHK EKM+VP +IF G LLTSSNY+D+E KVTGGRN
Sbjct: 128 EHKVEKMYVPALIF-------------------------GQLLTSSNYDDDEKKVTGGRN 162
Query: 192 GYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDL 251
GYGAKLCNIFS++F VET+ EYKK FKQ W DNM + E+K + +D+T ITF PDL
Sbjct: 163 GYGAKLCNIFSTRFTVETASKEYKKMFKQTWMDNMGRAGDMELKPFNGEDYTCITFQPDL 222
Query: 252 TKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDG 310
+KFKM SLDKD+V L+ RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE G
Sbjct: 223 SKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETG 282
Query: 311 DPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKK 370
+ +K+++E VNPRWEV + S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKK
Sbjct: 283 NALKVVHEQVNPRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVSKLVDVVKK 342
Query: 371 KNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLI 430
KNK GG+A+K QVKNH+WIF+N LI
Sbjct: 343 KNK-----------------------------------GGVAVKAHQVKNHMWIFVNALI 367
Query: 431 VNPTFDSQTKENMTLQKGSFGSTC------------------------------------ 454
NPTFDSQTKENMTLQ SFGSTC
Sbjct: 368 ENPTFDSQTKENMTLQAKSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQIQLNKKCS 427
Query: 455 ---------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRG 505
+PKL+DANDAG++NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRG
Sbjct: 428 AVKHNRIKGIPKLDDANDAGSRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRG 487
Query: 506 KLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSH 565
K+LNVREA+HKQI+ENAEINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSH
Sbjct: 488 KILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSH 547
Query: 566 IKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTY 625
IKGL+INFIHHNWP+LLR FLEEFITPI+K +K ++EL+FYSLPEFEEWK T N +
Sbjct: 548 IKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQELAFYSLPEFEEWKSSTPNHKKW 607
Query: 626 KIKYYK 631
K+KYYK
Sbjct: 608 KVKYYK 613
Score = 155 bits (392), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 834 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRLLDGEEPLPMLPSYKN 893
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V+NGE+AIL+ +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 894 FKGTIEELASNQYVINGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 948
Score = 60.8 bits (146), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL K+R++K ELN LK K+P+DLW +DL E
Sbjct: 1120 FNYLLDMPLWYLTKEKKDELCKQRNEKEQELNTLKNKSPSDLWKEDLAVFIE 1171
>gi|47523094|ref|NP_999049.1| DNA topoisomerase 2-alpha [Sus scrofa]
gi|6094498|sp|O46374.1|TOP2A_PIG RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
topoisomerase II, alpha isozyme
gi|2668414|dbj|BAA23778.1| topoisomersae II [Sus scrofa]
Length = 1533
Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/649 (60%), Positives = 465/649 (71%), Gaps = 107/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 27 RLSIERIYQKKTQLEHILLRPDTYIGSVESVTQQMWVYDEDIG-INYREVTFVPGLYKIF 85
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 86 DEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIF--- 142
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+DEE KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 143 ----------------------GQLLTSSNYDDEEKKVTGGRNGYGAKLCNIFSTKFTVE 180
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ EYKK FKQ W DNM + E+K + +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFHPDLSKFKMQSLDKDIVALMV 240
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG KLPVK F+ YV LY D+ DE G+P+KII+E VN RWEV
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDLYLKDKVDETGNPLKIIHEQVNHRWEVC 300
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 301 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVAKLVDVVKKKNK-------------- 346
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 347 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQV 385
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGSTC +PKL+DAN
Sbjct: 386 KSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDAN 445
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG +NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 446 DAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENA 505
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 506 EINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 565
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
R FLEEFITPI+K +K ++E++FYSLPEFEEWK T N +K+KYYK
Sbjct: 566 RHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYK 614
Score = 149 bits (376), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+ ++ GE+PLPM P YKN
Sbjct: 835 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRLLMDGEEPLPMLPSYKN 894
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V++GE+AIL+ +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 895 FKGTIEELAPNQYVISGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 949
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL K R++K EL LK+K+P+DLW +DL A E
Sbjct: 1125 FNYLLDMPLWYLTKEKKDELCKLRNEKEQELETLKRKSPSDLWKEDLAAFIE 1176
>gi|432921791|ref|XP_004080225.1| PREDICTED: DNA topoisomerase 2-alpha-like [Oryzias latipes]
Length = 1571
Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/661 (58%), Positives = 469/661 (70%), Gaps = 107/661 (16%)
Query: 17 NGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERR 76
N P K K + ++SVE+IYQKK+QLEHILLRPD+YIGSVEP+T+ MW+ + + + R
Sbjct: 11 NKPLEKTKKDSKRLSVERIYQKKTQLEHILLRPDSYIGSVEPVTQQMWVYDVDVG-LNCR 69
Query: 77 EITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDE 136
++T+VPGLYKIFDEILVNA DNKQRD M+CIK+ ++ E NTISVWNNGKGIPVVEHK E
Sbjct: 70 DVTFVPGLYKIFDEILVNAADNKQRDKSMSCIKVNIDVENNTISVWNNGKGIPVVEHKVE 129
Query: 137 KMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAK 196
K++VP +IF G LLTSSNY+DE+ KVTGGRNGYGAK
Sbjct: 130 KVYVPALIF-------------------------GQLLTSSNYDDEQKKVTGGRNGYGAK 164
Query: 197 LCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKM 256
LCNIFS+KF VET+C E +K+FKQ W DNM + IK+ ++FT ITF PDL+KFKM
Sbjct: 165 LCNIFSTKFTVETACKESRKTFKQTWYDNMGRAGDTNIKAFDGEEFTCITFKPDLSKFKM 224
Query: 257 TSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKI 315
++LDKD V L+TRRAYD A S+K VKVF NG++LP+ F+ YV +Y D+ DE G P+ +
Sbjct: 225 STLDKDTVALMTRRAYDVAGSSKGVKVFFNGKRLPITGFRSYVDMYVKDKVDELGGPLTV 284
Query: 316 IYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDL 375
I+E VN RWEV + S++GFQQVSFVNSIATTKGGRH+D V D IV ++IEVVKKKNK
Sbjct: 285 IHEAVNERWEVCLTMSEKGFQQVSFVNSIATTKGGRHIDYVADQIVGRLIEVVKKKNK-- 342
Query: 376 GCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTF 435
G+A+KPFQVKNH+W+F+NCL+ NPTF
Sbjct: 343 ---------------------------------AGVAVKPFQVKNHMWLFVNCLVENPTF 369
Query: 436 DSQTKENMTLQKGSFGSTC----------------------------------------- 454
DSQTKENMTLQ+ SFGSTC
Sbjct: 370 DSQTKENMTLQQKSFGSTCSLSDKFFKQATSCGIVESIMNWVKFKAQTQLNKKCSAVKHT 429
Query: 455 ----VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNV 510
VPKL+DANDAG KNSI CTLILTEGDSAK+LAVSGLGVVGRD+YGVFPLRGK+LNV
Sbjct: 430 KIKGVPKLDDANDAGGKNSIGCTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLRGKMLNV 489
Query: 511 REATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLI 570
REA+HKQI+ENAEINN++KILGLQY K Y+ E +K+LRYG++MIMTDQDQDGSHIKGL+
Sbjct: 490 REASHKQIMENAEINNVIKILGLQYKKNYSDPESLKSLRYGKIMIMTDQDQDGSHIKGLL 549
Query: 571 INFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYY 630
INFIHHNWP+LLR FLEEFITPIIKA+ + +LSFYS+PEF WKE +N ++KIKYY
Sbjct: 550 INFIHHNWPSLLRHNFLEEFITPIIKASNKKNQLSFYSIPEFNAWKETQSNHKSWKIKYY 609
Query: 631 K 631
K
Sbjct: 610 K 610
Score = 147 bits (372), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 88/115 (76%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIP VLVNGAEGIGTGW +KIPN++ REIV NI RM+ GE+PLPM P YK
Sbjct: 831 RVEPEWYIPIIPTVLVNGAEGIGTGWASKIPNYDIREIVSNIHRMLDGEEPLPMLPNYKG 890
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F+G ID ++++ +GE+AI+D +EI+EL V WT YK+ L+ +L+G +K
Sbjct: 891 FRGTIDQVMSNQYMNSGEVAIIDSTTIEISELPVKTWTQAYKENVLEPMLNGTDK 945
Score = 70.5 bits (171), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 38/53 (71%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
DY+YLL M W LT E+K +L K+RD KMTELN LK K+P DLW +DL A E
Sbjct: 1117 DYNYLLSMPMWFLTKEKKEDLCKQRDAKMTELNTLKGKSPADLWKEDLAAFSE 1169
>gi|395540283|ref|XP_003772086.1| PREDICTED: DNA topoisomerase 2-beta [Sarcophilus harrisii]
Length = 1601
Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/658 (59%), Positives = 466/658 (70%), Gaps = 107/658 (16%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
S K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T++MW+ + E M RE+T
Sbjct: 19 SSNKNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQSMWVYDEEVG-MNCREVT 77
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
+VPGLYKIFDEILVNA DNKQRD M CIKI+++ E+N IS+WNNGKGIPVVEHK EK++
Sbjct: 78 FVPGLYKIFDEILVNAADNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEHKVEKVY 137
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCN 199
VP +IF G LLTSSNY+D+E KVTGGRNGYGAKLCN
Sbjct: 138 VPALIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCN 172
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSL 259
IFS+KF VET+C EYK SFKQ W +NM K + P++K DD+T ITF PDL KFKM L
Sbjct: 173 IFSTKFTVETACKEYKHSFKQTWVNNMMKTSEPKVKYFDGDDYTCITFQPDLAKFKMEKL 232
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYE 318
DKD+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E
Sbjct: 233 DKDIVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHE 292
Query: 319 NVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCT 378
N RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD IV ++IEVVKKKNK
Sbjct: 293 LANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQIVGKLIEVVKKKNK----- 347
Query: 379 IIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQ 438
G+++KPFQVKNHIW+F+NCLI NPTFDSQ
Sbjct: 348 ------------------------------AGVSVKPFQVKNHIWVFVNCLIENPTFDSQ 377
Query: 439 TKENMTLQKGSFGSTC-------------------------------------------- 454
TKENMTLQ SFGS C
Sbjct: 378 TKENMTLQPKSFGSKCQLSEKFFKAASNCGIIESILNWVKFKAQTQLNKKCSSVKYSKIK 437
Query: 455 -VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREA 513
+PKL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA
Sbjct: 438 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREA 497
Query: 514 THKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINF 573
+HKQI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INF
Sbjct: 498 SHKQIMENAEINNIIKIVGLQYKKSYEDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINF 557
Query: 574 IHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
IHHNWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 558 IHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 615
Score = 149 bits (375), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWY+PIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 836 RVEPEWYMPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 895
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 896 FKGTIQEIGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 950
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK-DKIHP 909
D++Y+L M+ W LT E+ EL+K+RD K ELN LK+K+P+DLW +DL A E+ DK+
Sbjct: 1122 DFNYILNMSLWCLTKEKVEELIKQRDAKGRELNDLKRKSPSDLWKEDLAAFVEELDKVEA 1181
Query: 910 CPGGNRTRGLALK 922
+ G+A K
Sbjct: 1182 QEREDALAGMAGK 1194
>gi|220616|dbj|BAA02076.1| DNA topoisomerase II [Mus musculus]
Length = 1528
Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/649 (59%), Positives = 464/649 (71%), Gaps = 107/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 26 RLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIF 84
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EK++VP +IF
Sbjct: 85 DEILVNAADNKQRDPKMSCIRVTIDPENNVISIWNNGKGIPVVEHKVEKIYVPALIF--- 141
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 142 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 179
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ YKK FKQ W DNM + E+K S +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 180 TASRAYKKMFKQTWMDNMGRAGDMELKPFSGEDYTCITFQPDLSKFKMQSLDKDIVALMV 239
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG LPVK F+ YV LY D+ DE G+ +K+I+E VNPRWEV
Sbjct: 240 RRAYDIAGSTKDVKVFLNGNMLPVKGFRSYVDLYLKDKVDETGNSLKVIHEQVNPRWEVC 299
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S+RGFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 300 LTMSERGFQQISFVNSIATSKGGRHVDYVADQIVSKLVDVVKKKNK-------------- 345
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 346 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQA 384
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGSTC +PKL+DAN
Sbjct: 385 KSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQIQLNKKCSAVKHTKIKGIPKLDDAN 444
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG++NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 445 DAGSRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENA 504
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 505 EINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 564
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
R FLEEFITPI+K +K ++E++FYSLPEFEEWK T N +K+KYYK
Sbjct: 565 RHRFLEEFITPIVKVSKNKQEIAFYSLPEFEEWKSSTPNHKKWKVKYYK 613
Score = 147 bits (372), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 88/115 (76%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWY PI MVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 834 RVEPEWYNPINTMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEEPLPMLPSYKN 893
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V+NGE+AILD +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 894 FKGTIEELASNQYVINGEVAILDSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 948
Score = 61.6 bits (148), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 38/52 (73%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL K+R++K ELN LK+K+P+DLW +DL E
Sbjct: 1122 FNYLLDMPLWYLTKEKKDELCKQRNEKEQELNTLKQKSPSDLWKEDLAVFIE 1173
>gi|291405994|ref|XP_002719184.1| PREDICTED: DNA topoisomerase II, alpha isozyme-like [Oryctolagus
cuniculus]
Length = 1181
Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/667 (59%), Positives = 473/667 (70%), Gaps = 108/667 (16%)
Query: 12 VQQNGNGPSPKKKTPANK-MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRET 70
V +N KK A K +S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + +
Sbjct: 9 VNENMQMNKIKKNEDAKKRLSIERIYQKKTQLEHILLRPDTYIGSVELVTQHMWVYDEDV 68
Query: 71 NHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPV 130
+ RE+T+VPGLYKIFDEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPV
Sbjct: 69 G-INYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPV 127
Query: 131 VEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGR 190
VEHK EKM+VP +IF G LLTSSNY+D+E KVTGGR
Sbjct: 128 VEHKVEKMYVPALIF-------------------------GQLLTSSNYDDDEKKVTGGR 162
Query: 191 NGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPD 250
NGYGAKLCNIFS+KF VET+ EYKK FKQ W DNM + E+KS S +D+T ITF PD
Sbjct: 163 NGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKSFSGEDYTCITFQPD 222
Query: 251 LTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDED 309
L+KFKM SLDKD+V L+ RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE
Sbjct: 223 LSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKVDET 282
Query: 310 GDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVK 369
G+P+K+I+E VN RWEV + S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVK
Sbjct: 283 GNPLKVIHEQVNHRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVAKLVDVVK 342
Query: 370 KKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCL 429
KKNK GG+A+K QVKNH+WIF+N L
Sbjct: 343 KKNK-----------------------------------GGVAVKAHQVKNHMWIFVNAL 367
Query: 430 IVNPTFDSQTKENMTLQKGSFGSTC----------------------------------- 454
I NPTFDSQTKENMTLQ SFGSTC
Sbjct: 368 IENPTFDSQTKENMTLQAKSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQVQLNKKC 427
Query: 455 ----------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLR 504
+PKL+DANDAG++NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLR
Sbjct: 428 SAVKHNRIKGIPKLDDANDAGSRNSAECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLR 487
Query: 505 GKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGS 564
GK+LNVREA+HKQI+ENAEINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGS
Sbjct: 488 GKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGS 547
Query: 565 HIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHT 624
HIKGL+INFIHHNWP+LLR FLEEFITPI+K ++ ++E++FYSLPEFEEWK T N
Sbjct: 548 HIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSRNKQEMAFYSLPEFEEWKSSTPNHKK 607
Query: 625 YKIKYYK 631
+K+KYYK
Sbjct: 608 WKVKYYK 614
Score = 154 bits (390), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 70/115 (60%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + REIV+NI+R++ GE+PLPM P YKN
Sbjct: 835 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEEPLPMLPSYKN 894
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V+NGE+AIL+ +EI+EL V WT YK+ L+ +L+G EK
Sbjct: 895 FKGTIEELAPNQYVINGEVAILNSTTIEISELPVRTWTQTYKEQVLEPMLNGTEK 949
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 817 QKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRD 876
Q+ P E E E E +++ S T D ++YLL M W LT E+K+EL ++R+
Sbjct: 1094 QQKVPDEEENEESDTEKETEKSDSVT----DSGPTFNYLLDMPLWYLTKEKKDELCRQRN 1149
Query: 877 DKMTELNILKKKAPTDLWSDDLDALREK 904
+K EL LK+K P+DLW +DL A E+
Sbjct: 1150 EKEQELETLKRKGPSDLWKEDLAAFIEE 1177
>gi|2909391|emb|CAA76312.1| DNA topoisomerase II alpha [Cricetulus longicaudatus]
Length = 1526
Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/666 (58%), Positives = 471/666 (70%), Gaps = 107/666 (16%)
Query: 12 VQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETN 71
V +N K + ++S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + +
Sbjct: 9 VNENMQMNKKKNEDAKKRLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG 68
Query: 72 HMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVV 131
+ RE+T+VPGLYKIFDEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVV
Sbjct: 69 -INYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVV 127
Query: 132 EHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRN 191
EHK EKM+VP +IF G LLTSSNY+D+E KVTGGRN
Sbjct: 128 EHKVEKMYVPALIF-------------------------GQLLTSSNYDDDEKKVTGGRN 162
Query: 192 GYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDL 251
GYGAKLCNIFS++F VET+ EYKK FKQ W DNM + E+K + +D+T ITF PDL
Sbjct: 163 GYGAKLCNIFSTRFTVETASKEYKKMFKQTWMDNMGRAGDMELKPFNGEDYTCITFQPDL 222
Query: 252 TKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDG 310
+KFKM SLDKD+V L+ RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE G
Sbjct: 223 SKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETG 282
Query: 311 DPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKK 370
+ +K+++E VNPRWEV + S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKK
Sbjct: 283 NALKVVHEQVNPRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVSKLVDVVKK 342
Query: 371 KNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLI 430
KNK GG+A+K QVKNH+WIF+N LI
Sbjct: 343 KNK-----------------------------------GGVAVKAHQVKNHMWIFVNALI 367
Query: 431 VNPTFDSQTKENMTLQKGSFGSTC------------------------------------ 454
NP+FDSQTKENMTLQ SFGSTC
Sbjct: 368 ENPSFDSQTKENMTLQAKSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQIQLNKKCS 427
Query: 455 ---------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRG 505
+PKL+DANDAG++NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRG
Sbjct: 428 AVKHNRIKGIPKLDDANDAGSRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRG 487
Query: 506 KLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSH 565
K+LNVREA+HKQI+ENAEINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSH
Sbjct: 488 KILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSH 547
Query: 566 IKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTY 625
IKGL+INFIHHNWP+LLR FLEEFITPI+K +K ++EL+FYSLPEFEEWK T N +
Sbjct: 548 IKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQELAFYSLPEFEEWKSSTPNHKKW 607
Query: 626 KIKYYK 631
K+KYYK
Sbjct: 608 KVKYYK 613
Score = 153 bits (386), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K PN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 834 RVEPEWYIPIIPMVLINGAEGIGTGWSCKTPNFDIREVVNNIRRLLDGEEPLPMLPSYKN 893
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V+NGE+AIL+ +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 894 FKGTIEELASNQYVINGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 948
Score = 60.8 bits (146), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL K+R++K ELN LK K+P+DLW +DL E
Sbjct: 1120 FNYLLDMPLWYLTKEKKDELCKQRNEKEQELNTLKNKSPSDLWKEDLAVFIE 1171
>gi|149054149|gb|EDM05966.1| topoisomerase (DNA) 2 alpha [Rattus norvegicus]
Length = 1528
Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/649 (59%), Positives = 465/649 (71%), Gaps = 107/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 26 RLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIF 84
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 85 DEILVNAADNKQRDPKMSCIRVTIDAENNLISIWNNGKGIPVVEHKVEKMYVPALIF--- 141
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 142 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 179
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ EYKK FKQ W DNM + E+K S +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 180 TASREYKKMFKQTWMDNMGRAGDMELKPFSGEDYTCITFQPDLSKFKMQSLDKDIVALMV 239
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG +LPVK F+ YV +Y D+ DE G+ +K+++E VNPRWEV
Sbjct: 240 RRAYDIAGSTKDVKVFLNGNRLPVKGFRSYVDMYLKDKVDETGNALKVVHEQVNPRWEVC 299
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 300 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVSKLVDVVKKKNK-------------- 345
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 346 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQA 384
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGSTC +PKL+DAN
Sbjct: 385 KSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQIQLNKKCSAVKHNRIKGIPKLDDAN 444
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG++NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 445 DAGSRNSAECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENA 504
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 505 EINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 564
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
R FLEEFITPI+K +K ++E++FYSLPEFEEWK N +K+KYYK
Sbjct: 565 RHRFLEEFITPIVKVSKNKQEIAFYSLPEFEEWKSANPNHKKWKVKYYK 613
Score = 155 bits (391), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 834 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEEPLPMLPSYKN 893
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
+KG I+ +++V+NGE+AIL+ +EITEL + WT YK+ L+ +L+G EK
Sbjct: 894 YKGTIEELASNQYVINGEVAILNSTTIEITELPIRTWTQTYKEQVLEPMLNGTEK 948
Score = 65.9 bits (159), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 38/52 (73%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL K+RD+K ELN LKKK P+DLW +DL A E
Sbjct: 1123 FNYLLDMPLWYLTKEKKDELCKQRDEKEQELNTLKKKTPSDLWKEDLAAFVE 1174
>gi|56269784|gb|AAH86970.1| Top2a protein [Danio rerio]
gi|197247280|gb|AAI65253.1| Top2a protein [Danio rerio]
Length = 1570
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/656 (59%), Positives = 464/656 (70%), Gaps = 107/656 (16%)
Query: 22 KKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYV 81
K K ++SVE+IYQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + +T M R+IT+V
Sbjct: 19 KPKKDEKRLSVERIYQKKTQLEHILLRPDTYIGSVEPVTQQMWVFDEDTG-MNCRDITFV 77
Query: 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVP 141
PGLYKIFDEILVNA DNKQRD MNCIK+ ++ E NTISVWNNGKGIPVVEHK EK++VP
Sbjct: 78 PGLYKIFDEILVNAADNKQRDKTMNCIKVNIDPENNTISVWNNGKGIPVVEHKVEKVYVP 137
Query: 142 TMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIF 201
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIF
Sbjct: 138 ALIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIF 172
Query: 202 SSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDK 261
S KF VET+C E K+ FKQ W DNM + +IK DD+T ITF PDL KFKM +LDK
Sbjct: 173 SLKFTVETACRESKRCFKQTWFDNMGRAGESKIKPFDGDDYTCITFQPDLAKFKMQALDK 232
Query: 262 DMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENV 320
D V L+TRRAYD A STK V+V LNG++LP+ NF+ YV LY D+ DE G P+ +++E V
Sbjct: 233 DTVALLTRRAYDIAGSTKGVRVLLNGKRLPINNFRTYVDLYVKDKVDETGSPLTVVHEMV 292
Query: 321 NPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTII 380
N RWEV + S++GFQQVSFVNSIATTKGGRH D V D IV ++IEVVKKKNK
Sbjct: 293 NERWEVCLTLSEKGFQQVSFVNSIATTKGGRHTDYVADQIVSKLIEVVKKKNK------- 345
Query: 381 MLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTK 440
G+A+KPFQVKNH+W+F+NCLI NP+FDSQTK
Sbjct: 346 ----------------------------AGVAVKPFQVKNHMWLFVNCLIENPSFDSQTK 377
Query: 441 ENMTLQKGSFGSTC---------------------------------------------V 455
EN+TLQ+ +FGS C V
Sbjct: 378 ENVTLQQKNFGSACSLSDKFVKQANGCGIVESIMNWVKFKAQAQLNKKCSAVKHTKIKGV 437
Query: 456 PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATH 515
PKL+DANDAG KNS CTLILTEGDSAK+LAVSGLGVVGRD+YGVFPLRGK+L+VREA+H
Sbjct: 438 PKLDDANDAGGKNSNSCTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLRGKMLSVREASH 497
Query: 516 KQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIH 575
KQI+ENAEINN++KILGLQY K Y+ E +K+LRYG+LMIMTDQDQDGSHIKGL+INFIH
Sbjct: 498 KQIMENAEINNIIKILGLQYKKNYSDPESLKSLRYGKLMIMTDQDQDGSHIKGLLINFIH 557
Query: 576 HNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
HNWP+LLR FLEEFITPIIKA+ ++E+SFYS+PEF EWKE+ ++ ++KIKYYK
Sbjct: 558 HNWPSLLRHNFLEEFITPIIKASNKKQEISFYSIPEFTEWKEKQSSIKSWKIKYYK 613
Score = 153 bits (387), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 88/115 (76%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWY+PIIP+VL NG EGIGTGW ++IPN++ REI++NI RM+ GE+PLPM P YK
Sbjct: 834 RVEPEWYMPIIPLVLANGGEGIGTGWASRIPNYDVREIINNIHRMLNGEEPLPMLPSYKG 893
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG ID +++V NGE+AI+D +EITEL V WT YK+ L+ +L+G EK
Sbjct: 894 FKGTIDELAKNQYVNNGEVAIIDSTTIEITELPVKTWTQTYKENVLEVMLNGTEK 948
Score = 73.9 bits (180), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 39/53 (73%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
DY+YLL M W LT E+K+EL K+RD KMTELN LK KAP DLW +DL A E
Sbjct: 1116 DYNYLLSMPMWYLTKEKKDELCKQRDAKMTELNTLKMKAPADLWKEDLAAFTE 1168
>gi|338711459|ref|XP_003362534.1| PREDICTED: DNA topoisomerase 2-alpha-like [Equus caballus]
Length = 1485
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/649 (59%), Positives = 465/649 (71%), Gaps = 107/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 27 RLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIF 85
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 86 DEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIF--- 142
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 143 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ EYKK FKQ W DNM + E+K + +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFHPDLSKFKMQSLDKDIVALMV 240
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE G+P+KII+E VN RWEV
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKVDETGNPLKIIHEQVNHRWEVC 300
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 301 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNK-------------- 346
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 347 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQA 385
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
+FGSTC +PKL+DAN
Sbjct: 386 KNFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDAN 445
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG +NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 446 DAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENA 505
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 506 EINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 565
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
R FLEEFITPI+K +K ++E++FYSLPEFEEWK T N +K+KYYK
Sbjct: 566 RHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYK 614
Score = 153 bits (387), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVLVNGAEGIGTGW KIPN + REIV+NI+R++ GE+PLPM P YKN
Sbjct: 792 RVEPEWYIPIIPMVLVNGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEEPLPMLPSYKN 851
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V++GE+AIL+ +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 852 FKGTIEELAPNQYVISGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 906
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL K R++K EL LK+K+P+DLW +DL A E
Sbjct: 1082 FNYLLDMPLWYLTKEKKDELCKLRNEKEQELETLKRKSPSDLWKEDLAAFIE 1133
>gi|301779127|ref|XP_002924981.1| PREDICTED: DNA topoisomerase 2-alpha-like [Ailuropoda melanoleuca]
Length = 1533
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/667 (59%), Positives = 471/667 (70%), Gaps = 108/667 (16%)
Query: 12 VQQNGNGPSPKKKTPANK-MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRET 70
V +N KK A K +S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + +
Sbjct: 9 VNENMQISKTKKNEDAKKGLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDI 68
Query: 71 NHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPV 130
+ RE+T+VPGLYKIFDEILVNA DNKQRDP M+CI++T++ E N IS+WNNGKGIPV
Sbjct: 69 G-INYREVTFVPGLYKIFDEILVNAADNKQRDPNMSCIRVTIDPENNLISIWNNGKGIPV 127
Query: 131 VEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGR 190
VEHK EKM+VP +IF G LLTSSNY+D+E KVTGGR
Sbjct: 128 VEHKVEKMYVPALIF-------------------------GQLLTSSNYDDDEKKVTGGR 162
Query: 191 NGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPD 250
NGYGAKLCNIFS+KF VET+ EYKK FKQ W DNM + E+K + +D+T ITF PD
Sbjct: 163 NGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPD 222
Query: 251 LTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDED 309
L+KFKM SLDKD+V L+ RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE
Sbjct: 223 LSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKVDET 282
Query: 310 GDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVK 369
G+P+KII+E VNPRWEV + S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVK
Sbjct: 283 GNPLKIIHEQVNPRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVK 342
Query: 370 KKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCL 429
KKNK GG+A+K QVKNH+WIF+N L
Sbjct: 343 KKNK-----------------------------------GGVAVKAHQVKNHMWIFVNAL 367
Query: 430 IVNPTFDSQTKENMTLQKGSFGSTC----------------------------------- 454
I NPTFDSQTKENMTLQ SFGSTC
Sbjct: 368 IENPTFDSQTKENMTLQVKSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQVQLNKKC 427
Query: 455 ----------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLR 504
+PKL+DANDAG +NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLR
Sbjct: 428 SAVKHNRIKGIPKLDDANDAGGRNSNECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLR 487
Query: 505 GKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGS 564
GK+LNVREA+HKQI+ENAEINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGS
Sbjct: 488 GKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGS 547
Query: 565 HIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHT 624
HIKGL+INFIHHNWP+LLR FLEEFITPI+K +K ++E++FYSLPEFEEWK T N
Sbjct: 548 HIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKK 607
Query: 625 YKIKYYK 631
+K+KYYK
Sbjct: 608 WKVKYYK 614
Score = 152 bits (383), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 835 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRLMDGEEPLPMLPSYKN 894
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V++GE+AIL+ +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 895 FKGTIEELAPNQYVISGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 949
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL K R++K EL LK+K+P+DLW +DL A E
Sbjct: 1125 FNYLLDMPLWYLTKEKKDELCKLRNEKEQELETLKRKSPSDLWKEDLAAFIE 1176
>gi|338714796|ref|XP_001492165.2| PREDICTED: DNA topoisomerase 2-beta-like [Equus caballus]
Length = 1627
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/681 (57%), Positives = 476/681 (69%), Gaps = 114/681 (16%)
Query: 4 DESDFDPDVQQNGNGPSPK-------KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSV 56
D+S+F+ + + N + K K P+ K+SVE++YQKK+QLEHILLRPDTYIGSV
Sbjct: 20 DDSNFEEETLFDQNNAARKEELETANKNDPSKKLSVERVYQKKTQLEHILLRPDTYIGSV 79
Query: 57 EPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQET 116
EP+T+ MW+ + + M RE+T+VPGLYKIFDEILVNA DNKQRD M CIK++++ E+
Sbjct: 80 EPLTQLMWVYDEDVG-MNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPES 138
Query: 117 NTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTS 176
N IS+WNNGKGIPVVEHK EK++VP +IF G LLTS
Sbjct: 139 NIISIWNNGKGIPVVEHKVEKVYVPALIF-------------------------GQLLTS 173
Query: 177 SNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKS 236
SNY+D+E KVTGGRNGYGAKLCNIFS+KF VET+C EYK SFKQ W +NM K + +IK
Sbjct: 174 SNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKH 233
Query: 237 GSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQ 296
+D+T ITF PDL+KFKM LDKD+V L+TRRAYD A S K VKV NG+KLPV F+
Sbjct: 234 FDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFR 293
Query: 297 DYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDA 355
YV LY D+ DE G +K+I+E N RW+V + S++GFQQ+SFVNSIATTKGGRHVD
Sbjct: 294 SYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDY 353
Query: 356 VVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKP 415
VVD +V ++IEVVKKKNK G+++KP
Sbjct: 354 VVDQVVSKLIEVVKKKNK-----------------------------------AGVSVKP 378
Query: 416 FQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC--------------------- 454
FQVKNHIW+FINCLI NPTFDSQTKENMTLQ SFGS C
Sbjct: 379 FQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFKAASNCGIVESILN 438
Query: 455 ------------------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGL 490
+PKL+DANDAG K+S++CTLILTEGDSAKSLAVSGL
Sbjct: 439 WVKFKAQTQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGL 498
Query: 491 GVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRY 550
GV+GRD+YGVFPLRGK+LNVREA+HKQI+ENAEINN++KI+GLQY K Y E +KTLRY
Sbjct: 499 GVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRY 558
Query: 551 GRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLP 610
G++MIMTDQDQDGSHIKGL+INFIHHNWP+LL+ FLEEFITPI+KA+K ++ELSFYS+P
Sbjct: 559 GKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIP 618
Query: 611 EFEEWKEETTNWHTYKIKYYK 631
EF+EWK+ N +KIKYYK
Sbjct: 619 EFDEWKKHIENQKAWKIKYYK 639
Score = 150 bits (379), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 860 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLEGLDPHPMLPNYKN 919
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 920 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 974
Score = 65.5 bits (158), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 57/92 (61%), Gaps = 3/92 (3%)
Query: 832 EGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPT 891
+ + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E+N LK+K+P+
Sbjct: 1129 QNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKRKSPS 1186
Query: 892 DLWSDDLDALREK-DKIHPCPGGNRTRGLALK 922
DLW +DL A E+ DK+ + G+A K
Sbjct: 1187 DLWKEDLAAFVEELDKVEAQEREDILAGMAGK 1218
>gi|2909393|emb|CAA76313.1| DNA topoisomerase II alpha [Cricetulus longicaudatus]
Length = 1526
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/666 (58%), Positives = 470/666 (70%), Gaps = 107/666 (16%)
Query: 12 VQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETN 71
V +N K + ++S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + +
Sbjct: 9 VNENMQMNKKKNEDAKKRLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG 68
Query: 72 HMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVV 131
+ RE+T+VPGLYKIFDEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVV
Sbjct: 69 -INYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVV 127
Query: 132 EHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRN 191
EHK EKM+VP +IF G LLTSSNY+D+E KVTGGRN
Sbjct: 128 EHKVEKMYVPALIF-------------------------GQLLTSSNYDDDEKKVTGGRN 162
Query: 192 GYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDL 251
GYGAKLCNIFS++F VET+ EYKK FKQ W DNM + E+K + +D+T ITF PDL
Sbjct: 163 GYGAKLCNIFSTRFTVETASKEYKKMFKQTWMDNMGRAGDMELKPFNGEDYTCITFQPDL 222
Query: 252 TKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDG 310
+KFKM SLDKD+V L+ RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE G
Sbjct: 223 SKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETG 282
Query: 311 DPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKK 370
+ +K+++E VNPRWEV + S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKK
Sbjct: 283 NALKVVHEQVNPRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVSKLVDVVKK 342
Query: 371 KNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLI 430
KNK GG+A+K QVKNH+WIF+N LI
Sbjct: 343 KNK-----------------------------------GGVAVKAHQVKNHMWIFVNALI 367
Query: 431 VNPTFDSQTKENMTLQKGSFGSTC------------------------------------ 454
NPTFDSQTKENMTLQ SFGSTC
Sbjct: 368 ENPTFDSQTKENMTLQAKSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQIQLNKKCS 427
Query: 455 ---------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRG 505
+PKL+DANDAG++NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPL G
Sbjct: 428 AVKHNRIKGIPKLDDANDAGSRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLGG 487
Query: 506 KLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSH 565
K+LNVREA+HKQI+ENAEINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSH
Sbjct: 488 KILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSH 547
Query: 566 IKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTY 625
IKGL+INFIHHNWP+LLR FLEEFITPI+K +K ++EL+FYSLPEFEEWK T N +
Sbjct: 548 IKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQELAFYSLPEFEEWKSSTPNHKKW 607
Query: 626 KIKYYK 631
K+KYYK
Sbjct: 608 KVKYYK 613
Score = 155 bits (391), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 834 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRLLDGEEPLPMLPSYKN 893
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V+NGE+AIL+ +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 894 FKGTIEELASNQYVINGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 948
Score = 60.8 bits (146), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL K+R++K ELN LK K+P+DLW +DL E
Sbjct: 1120 FNYLLDMPLWYLTKEKKDELCKQRNEKEQELNTLKNKSPSDLWKEDLAVFIE 1171
>gi|344288185|ref|XP_003415831.1| PREDICTED: DNA topoisomerase 2-beta-like [Loxodonta africana]
Length = 1742
Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/651 (59%), Positives = 463/651 (71%), Gaps = 107/651 (16%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYK 86
+ K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VPGLYK
Sbjct: 164 SKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDDDVG-MNCREVTFVPGLYK 222
Query: 87 IFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFG 146
IFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK+FVP +IF
Sbjct: 223 IFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVFVPALIF- 281
Query: 147 HLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFV 206
G LLTSSNY+DEE KVTGGRNGYGAKLCNIFS+KF
Sbjct: 282 ------------------------GQLLTSSNYDDEEKKVTGGRNGYGAKLCNIFSTKFT 317
Query: 207 VETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDL 266
VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD+V L
Sbjct: 318 VETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVAL 377
Query: 267 ITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWE 325
+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N RW+
Sbjct: 378 MTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELANERWD 437
Query: 326 VAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 438 VCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK------------ 485
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTL 445
G+++KPFQVKNHIW+FINCLI NPTFDSQTKENMTL
Sbjct: 486 -----------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTL 522
Query: 446 QKGSFGSTC---------------------------------------------VPKLED 460
Q SFGS C +PKL+D
Sbjct: 523 QPKSFGSKCQLSEKFIKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIPKLDD 582
Query: 461 ANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILE 520
ANDAG K+S+DCTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HKQI+E
Sbjct: 583 ANDAGGKHSLDCTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIME 642
Query: 521 NAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPT 580
NAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+
Sbjct: 643 NAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPS 702
Query: 581 LLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 703 LLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 753
Score = 149 bits (377), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 974 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 1033
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 1034 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 1088
Score = 63.2 bits (152), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Query: 832 EGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPT 891
+ + D++ S + PD ++YLL M+ WSLT E+ EL+K+RD K E++ +K+K+P+
Sbjct: 1243 QNQHDDSSSDSGTPAGPD--FNYLLNMSLWSLTKEKVEELIKQRDTKGREVSDVKRKSPS 1300
Query: 892 DLWSDDLDA-LREKDKI 907
DLW +DL A + E DK+
Sbjct: 1301 DLWREDLAAFIEELDKV 1317
>gi|126341720|ref|XP_001380856.1| PREDICTED: DNA topoisomerase 2-beta [Monodelphis domestica]
Length = 1756
Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/658 (59%), Positives = 466/658 (70%), Gaps = 107/658 (16%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
S K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T++MW+ + + M RE+T
Sbjct: 174 SSNKNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQSMWVYDEDVG-MNCREVT 232
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
+VPGLYKIFDEILVNA DNKQRD M CIKI+++ E+N IS+WNNGKGIPVVEHK EK++
Sbjct: 233 FVPGLYKIFDEILVNAADNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEHKVEKVY 292
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCN 199
VP +IF G LLTSSNY+D+E KVTGGRNGYGAKLCN
Sbjct: 293 VPALIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCN 327
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSL 259
IFS+KF VET+C EYK SFKQ W +NM K + P++K DD+T ITF PDL KFKM L
Sbjct: 328 IFSTKFTVETACKEYKHSFKQTWVNNMMKTSEPKVKYFDGDDYTCITFQPDLLKFKMEKL 387
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYE 318
DKD+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E
Sbjct: 388 DKDIVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHE 447
Query: 319 NVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCT 378
N RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD IV ++IEVVKKKNK
Sbjct: 448 LANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQIVGKLIEVVKKKNK----- 502
Query: 379 IIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQ 438
G+++KPFQVKNHIW+F+NCLI NPTFDSQ
Sbjct: 503 ------------------------------AGVSVKPFQVKNHIWVFVNCLIENPTFDSQ 532
Query: 439 TKENMTLQKGSFGSTC-------------------------------------------- 454
TKENMTLQ SFGS C
Sbjct: 533 TKENMTLQPKSFGSKCQLSEKFFKAASNCGIIESILNWVKFKAQTQLNKKCSSVKYSKIK 592
Query: 455 -VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREA 513
+PKL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA
Sbjct: 593 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREA 652
Query: 514 THKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINF 573
+HKQI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INF
Sbjct: 653 SHKQIMENAEINNIIKIVGLQYKKSYEDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINF 712
Query: 574 IHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
IHHNWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 713 IHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 770
Score = 148 bits (374), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWY+PIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 991 RVEPEWYMPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 1050
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 1051 FKGTIQEIGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 1105
Score = 65.5 bits (158), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK-DKIHP 909
D++Y+L M+ W LT E+ EL+K+RD K ELN LK+K+P+DLW +DL A E+ DK+
Sbjct: 1277 DFNYILNMSLWCLTKEKVEELIKQRDTKGRELNDLKRKSPSDLWKEDLAAFVEELDKVEA 1336
Query: 910 CPGGNRTRGLALK 922
+ G+A K
Sbjct: 1337 QEREDALAGMAGK 1349
>gi|410971557|ref|XP_003992234.1| PREDICTED: DNA topoisomerase 2-beta [Felis catus]
Length = 1628
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/655 (58%), Positives = 464/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 47 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVP 105
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 106 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 165
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 166 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 200
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD
Sbjct: 201 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKD 260
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 261 IVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 320
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 321 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 372
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 373 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 405
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 406 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 465
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 466 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 525
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 526 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 585
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 586 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 640
Score = 150 bits (379), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 861 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 920
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 921 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 975
Score = 65.9 bits (159), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 57/92 (61%), Gaps = 3/92 (3%)
Query: 832 EGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPT 891
+ + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E+N LK+K+P+
Sbjct: 1130 QNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKRKSPS 1187
Query: 892 DLWSDDLDALREK-DKIHPCPGGNRTRGLALK 922
DLW +DL A E+ DK+ + G+A K
Sbjct: 1188 DLWKEDLAAFVEELDKVEAQEREDILAGMAGK 1219
>gi|397522864|ref|XP_003831468.1| PREDICTED: DNA topoisomerase 2-alpha [Pan paniscus]
Length = 1531
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/649 (59%), Positives = 464/649 (71%), Gaps = 107/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 27 RLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIF 85
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 86 DEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIF--- 142
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 143 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ EYKK FKQ W DNM + E+K + +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE G+ +K+I+E VN RWEV
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVC 300
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 301 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNK-------------- 346
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 347 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQP 385
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGSTC +PKL+DAN
Sbjct: 386 KSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDAN 445
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG +NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 446 DAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENA 505
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 506 EINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 565
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
R FLEEFITPI+K +K ++E++FYSLPEFEEWK T N +K+KYYK
Sbjct: 566 RHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYK 614
Score = 153 bits (387), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + REIV+NI+R++ GE+PLPM P YKN
Sbjct: 835 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEEPLPMLPSYKN 894
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V++GE+AIL+ +EI+EL V WT YK+ L+ +L+G EK
Sbjct: 895 FKGTIEELAPNQYVISGEVAILNSTTIEISELPVRTWTQTYKEQVLEPMLNGTEK 949
Score = 57.8 bits (138), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL + R++K EL+ LK+K+P+DLW +DL E
Sbjct: 1125 FNYLLDMPLWYLTKEKKDELCRLRNEKEQELDTLKRKSPSDLWKEDLATFIE 1176
>gi|291399726|ref|XP_002716252.1| PREDICTED: DNA topoisomerase II, beta isozyme-like [Oryctolagus
cuniculus]
Length = 1667
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/655 (59%), Positives = 463/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + E M RE+T+VP
Sbjct: 85 KNDTSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEEVG-MNCREVTFVP 143
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIKI+++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 144 GLYKIFDEILVNAADNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 203
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 204 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 238
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL KFKM LDKD
Sbjct: 239 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLAKFKMEKLDKD 298
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 299 IVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 358
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 359 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 410
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 411 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 443
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 444 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 503
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 504 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 563
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 564 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 623
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 624 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 678
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 899 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 958
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 959 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 1013
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Query: 832 EGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPT 891
+ + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E+N LK+K+P+
Sbjct: 1168 QNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDTKGREVNDLKRKSPS 1225
Query: 892 DLWSDDLDALREK-DKI 907
DLW +DL A E+ DK+
Sbjct: 1226 DLWKEDLAAFVEELDKV 1242
>gi|345327921|ref|XP_001507216.2| PREDICTED: DNA topoisomerase 2-beta-like [Ornithorhynchus anatinus]
Length = 1915
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/658 (59%), Positives = 465/658 (70%), Gaps = 107/658 (16%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
S K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T
Sbjct: 334 STNKNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVT 392
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
+VPGLYKIFDEILVNA DNKQRD M CIKI+++ E+N IS+WNNGKGIPVVEHK EK++
Sbjct: 393 FVPGLYKIFDEILVNAADNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEHKVEKVY 452
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCN 199
VP +IF G LLTSSNY+D+E KVTGGRNGYGAKLCN
Sbjct: 453 VPALIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCN 487
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSL 259
IFS+KF VET+C EYK SFKQ W +NM K + P+IK +D+T ITF PDL KFKM L
Sbjct: 488 IFSTKFTVETACKEYKHSFKQTWVNNMMKTSEPKIKHFEGEDYTCITFQPDLAKFKMDKL 547
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYE 318
DKD+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E
Sbjct: 548 DKDIVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHE 607
Query: 319 NVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCT 378
N RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD IV ++IEVVKKKNK
Sbjct: 608 LANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQIVGKLIEVVKKKNK----- 662
Query: 379 IIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQ 438
G+++KPFQVKNHIW+F+NCLI NPTFDSQ
Sbjct: 663 ------------------------------AGVSVKPFQVKNHIWVFVNCLIENPTFDSQ 692
Query: 439 TKENMTLQKGSFGSTC-------------------------------------------- 454
TKENMTLQ SFGS C
Sbjct: 693 TKENMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIK 752
Query: 455 -VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREA 513
+PKL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA
Sbjct: 753 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREA 812
Query: 514 THKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINF 573
+HKQI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INF
Sbjct: 813 SHKQIMENAEINNIIKIVGLQYKKSYEDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINF 872
Query: 574 IHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
IHHNWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 873 IHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHMENHKAWKIKYYK 930
Score = 149 bits (376), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 1151 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 1210
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F+G I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 1211 FRGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 1265
Score = 68.6 bits (166), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 56/89 (62%), Gaps = 7/89 (7%)
Query: 824 ERQERQAAEGE----DDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKM 879
E QE+ A E E D++ S + PD ++Y+L M+ W LT E+ EL+K+RD K
Sbjct: 1408 EAQEKAAEEDETQNQHDDSSSDSGTTTGPD--FNYILNMSLWCLTKEKVEELIKQRDAKG 1465
Query: 880 TELNILKKKAPTDLWSDDLDALREK-DKI 907
ELN LK+K+P+DLW +DL A E+ DK+
Sbjct: 1466 RELNDLKRKSPSDLWKEDLAAFVEELDKV 1494
>gi|327283546|ref|XP_003226502.1| PREDICTED: DNA topoisomerase 2-beta-like [Anolis carolinensis]
Length = 1640
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/659 (59%), Positives = 463/659 (70%), Gaps = 107/659 (16%)
Query: 19 PSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREI 78
P K + KMSVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M REI
Sbjct: 50 PEHTSKNDSKKMSVERVYQKKTQLEHILLRPDTYIGSVEPVTQLMWVFDEDIG-MNCREI 108
Query: 79 TYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKM 138
T+VPGLYKIFDEILVNA DNKQRD M CIKI+++ E+N IS+WNNGKGIPVVEHK EKM
Sbjct: 109 TFVPGLYKIFDEILVNAADNKQRDKNMTCIKISIDAESNIISIWNNGKGIPVVEHKVEKM 168
Query: 139 FVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLC 198
+VP +IF G LLTSSNY+D+E KVTGGRNGYGAKLC
Sbjct: 169 YVPALIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLC 203
Query: 199 NIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTS 258
NIFS+KF VET+C EYK SFKQ W +NM K + P+IK DD+T +TF PDL KFKM
Sbjct: 204 NIFSTKFTVETACKEYKHSFKQTWLNNMMKTSDPKIKHFEGDDYTCVTFQPDLAKFKMEK 263
Query: 259 LDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIY 317
LDKD V L+TRRAYD A + K VK+ NG+KLPV F+ YV LY D+ DE G +K+ +
Sbjct: 264 LDKDTVALMTRRAYDLAGACKGVKIMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVTH 323
Query: 318 ENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGC 377
E N RW+V + S++GFQQVSFVNSIATTKGGRHVD VVD IV ++IEVVKKKNK
Sbjct: 324 ELANERWDVCLTLSEKGFQQVSFVNSIATTKGGRHVDYVVDQIVGKLIEVVKKKNK---- 379
Query: 378 TIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDS 437
G+++KPFQVKNHIW+FINCLI NP+FDS
Sbjct: 380 -------------------------------AGVSVKPFQVKNHIWVFINCLIENPSFDS 408
Query: 438 QTKENMTLQKGSFGSTC------------------------------------------- 454
QTKENMTLQ SFGS C
Sbjct: 409 QTKENMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKHSKI 468
Query: 455 --VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVRE 512
+PKL+DANDAG K+S+DCTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVRE
Sbjct: 469 KGIPKLDDANDAGGKHSLDCTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVRE 528
Query: 513 ATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIIN 572
A+HKQI+ENAEINN++KI+GLQY K Y E +K+LRYG++MIMTDQDQDGSHIKGL+IN
Sbjct: 529 ASHKQIMENAEINNIIKIVGLQYKKSYEDPESLKSLRYGKIMIMTDQDQDGSHIKGLLIN 588
Query: 573 FIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FIHHNWP+LL+ FLEEFITPI+KA+K ++EL+FYS+PEF+EWK+ N +KIKYYK
Sbjct: 589 FIHHNWPSLLKHGFLEEFITPIVKASKNKQELAFYSIPEFDEWKKHMENHKAWKIKYYK 647
Score = 157 bits (396), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/115 (62%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVLVNGAEGIGTGW KIPN++ REIV+N++RM+ G DPLPM P YKN
Sbjct: 868 RVEPEWYIPIIPMVLVNGAEGIGTGWACKIPNYDTREIVNNVRRMLDGLDPLPMLPNYKN 927
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++VV+GEI ++D + +EITEL V WT YK+ L+ +L+G EK
Sbjct: 928 FKGAIQELGQNQYVVSGEIYVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTEK 982
Score = 61.6 bits (148), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK-DKI 907
D++Y+L M+ W LT E+ +++K+RD K +LN LK+K+P+DLW +DL A E+ DK+
Sbjct: 1154 DFNYILNMSLWCLTKEKVEDIIKQRDSKGKDLNDLKRKSPSDLWKEDLAAFVEELDKV 1211
>gi|51467892|ref|NP_001003834.1| DNA topoisomerase 2-alpha [Danio rerio]
gi|49619131|gb|AAT68150.1| topoisomerase 2 [Danio rerio]
Length = 1574
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/656 (59%), Positives = 461/656 (70%), Gaps = 107/656 (16%)
Query: 22 KKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYV 81
K K ++SVE+IYQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + +T M R+IT+V
Sbjct: 19 KPKKDEKRLSVERIYQKKTQLEHILLRPDTYIGSVEPVTQQMWVFDEDTG-MNCRDITFV 77
Query: 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVP 141
PGLYKIFDEILVNA DNKQRD MNCIK+ ++ E NTISVWNNGKGIPVVEHK EK++VP
Sbjct: 78 PGLYKIFDEILVNAADNKQRDKTMNCIKVNIDPENNTISVWNNGKGIPVVEHKVEKVYVP 137
Query: 142 TMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIF 201
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIF
Sbjct: 138 ALIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIF 172
Query: 202 SSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDK 261
S KF VET+C E K+ FKQ W DNM + +IK DD+T ITF PDL KFKM +LDK
Sbjct: 173 SLKFTVETACRESKRCFKQTWFDNMERAGESKIKPFDGDDYTCITFQPDLAKFKMQALDK 232
Query: 262 DMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENV 320
D V L+TRRAYD A STK V+V LNG++LP+ NF+ YV LY D+ DE G P+ +++E V
Sbjct: 233 DTVALLTRRAYDIAGSTKGVRVLLNGKRLPINNFRTYVDLYVKDKVDETGSPLTVVHEMV 292
Query: 321 NPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTII 380
N RWEV + S++GFQQVSFVNSI KGGRH D V D IV ++IEVVKKKNK
Sbjct: 293 NERWEVCLTLSEKGFQQVSFVNSIDKNKGGRHTDYVADQIVSKLIEVVKKKNK------- 345
Query: 381 MLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTK 440
G+A+KPFQVKNH+W+F+NCLI NP+FDSQTK
Sbjct: 346 ----------------------------AGVAVKPFQVKNHMWLFVNCLIENPSFDSQTK 377
Query: 441 ENMTLQKGSFGSTC---------------------------------------------V 455
ENMTLQ+ +FGS C V
Sbjct: 378 ENMTLQQKNFGSACSLSDKFVKQANGCGIVESIMNWVKFKAQAQLNKKCSAVKHTKIKGV 437
Query: 456 PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATH 515
PKL+DANDAG KNS CTLILTEGDSAK+LAVSGLGVVGRD+YGVFPLRGK+LNVREA+H
Sbjct: 438 PKLDDANDAGGKNSNSCTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLRGKMLNVREASH 497
Query: 516 KQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIH 575
KQI+ENAEINN++KILGLQY K Y+ E +K+LRYG+LMIMTDQDQDGSHIKGL+INFIH
Sbjct: 498 KQIMENAEINNIIKILGLQYKKNYSDPESLKSLRYGKLMIMTDQDQDGSHIKGLLINFIH 557
Query: 576 HNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
HNWP+LLR FLEEFITPIIKA+ ++E+SFYS+PEF EWKE+ ++ ++KIKYYK
Sbjct: 558 HNWPSLLRHNFLEEFITPIIKASNKKQEISFYSIPEFTEWKEKQSSIKSWKIKYYK 613
Score = 142 bits (359), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 87/119 (73%), Gaps = 5/119 (4%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMK--PWY 716
R+EPEWY+PIIP+VL NG EGIGTGW ++IP ++ REI++NI RMI GE+PLPM P Y
Sbjct: 834 RVEPEWYMPIIPLVLANGGEGIGTGWASRIPKYDVREIINNIHRMINGEEPLPMVNLPSY 893
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWT---TDYKDTLDTLLHGAEK 772
K FKG ID +++V NGE+AI+D +EITEL V WT T ++ L+ +L+G EK
Sbjct: 894 KGFKGTIDELAKNQYVNNGEVAIIDSTTIEITELPVKTWTPGLTYKENVLEVMLNGTEK 952
Score = 73.9 bits (180), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 39/53 (73%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
DY+YLL M W LT E+K+EL K+RD KMTELN LK KAP DLW +DL A E
Sbjct: 1120 DYNYLLSMPMWYLTKEKKDELCKQRDAKMTELNTLKMKAPADLWKEDLAAFTE 1172
>gi|170575369|ref|XP_001893211.1| DNA topoisomerase II, alpha isozyme [Brugia malayi]
gi|158600906|gb|EDP37957.1| DNA topoisomerase II, alpha isozyme, putative [Brugia malayi]
Length = 1511
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/628 (61%), Positives = 460/628 (73%), Gaps = 83/628 (13%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITET-MWLMNRETNHMERREITYVPGLYKI 87
++S+EKIYQKKSQLEHILLRPDTYIGSVE T MW+ + ET+ + +REI+YVPGLYKI
Sbjct: 70 RLSIEKIYQKKSQLEHILLRPDTYIGSVEYTDRTPMWVYDTETDRILQREISYVPGLYKI 129
Query: 88 FDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGH 147
FDEILVNA DNKQRDPKMN IK+ +N+E N IS++NNG+GIPVV HK EK++VP +IF
Sbjct: 130 FDEILVNAADNKQRDPKMNLIKVNINKEKNEISIYNNGRGIPVVLHKIEKLYVPELIF-- 187
Query: 148 LLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVV 207
G LLTSSNY+D E KVTGGRNGYGAKLCNIFS +F +
Sbjct: 188 -----------------------GTLLTSSNYDDSERKVTGGRNGYGAKLCNIFSKEFTL 224
Query: 208 ETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLI 267
ETS +EY K+FKQ W +NMSK P+I + SK+DFT++TF PDL KFKMT LD D+V L+
Sbjct: 225 ETSTNEYGKAFKQTWVNNMSKDGEPKITTSSKEDFTRVTFRPDLAKFKMTELDDDIVALM 284
Query: 268 TRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQ-DEDGDPVKIIYENVNPRWEV 326
RRAYD A ST+ VKVFLN +++PV+ F+ Y++ Y D +G+ K++YE+V+PRWEV
Sbjct: 285 CRRAYDIAGSTRGVKVFLNNKQIPVQGFKQYIEQYVKHNVDSNGEAYKVVYESVSPRWEV 344
Query: 327 AIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNK 386
A+ SD+GFQQVSF NSIATTKGGRHVD VVD I ++I+V+KKK
Sbjct: 345 ALTISDKGFQQVSFTNSIATTKGGRHVDYVVDQIASKLIDVIKKK--------------- 389
Query: 387 FNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ 446
IG + GG+ +KPFQ+KNH+WIF+N LI NPTFDSQTKE MTLQ
Sbjct: 390 -----------------IG-KSGGINVKPFQIKNHMWIFVNALIENPTFDSQTKETMTLQ 431
Query: 447 KGSFGSTC-----------------------VPKLEDANDAGTKNSIDCTLILTEGDSAK 483
SFGSTC VPKLEDANDAGTKNS CTLILTEGDSAK
Sbjct: 432 SKSFGSTCELSEKFIQAAMKCGIVEAIMAWGVPKLEDANDAGTKNSAQCTLILTEGDSAK 491
Query: 484 SLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVE 543
SLAVSGLGVVGRDKYGVFPLRGK+LNVRE HKQI+ENAE+N L+KI+GLQY KY E
Sbjct: 492 SLAVSGLGVVGRDKYGVFPLRGKMLNVREGNHKQIMENAEVNALLKIIGLQYRLKYDKDE 551
Query: 544 DMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREE 603
DMKTLRYG++M+M DQDQDGSHIKGL+INFIH+NWP L+R F+EEFITPI+KATK +EE
Sbjct: 552 DMKTLRYGKVMVMADQDQDGSHIKGLVINFIHYNWPALVRRNFVEEFITPIVKATKGKEE 611
Query: 604 LSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+SF+SLPE+ EW T NW TY+IKYYK
Sbjct: 612 ISFFSLPEYREWLNNTENWKTYRIKYYK 639
Score = 152 bits (385), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 104/155 (67%), Gaps = 5/155 (3%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPEWY P+IP VLVNGAEGIGT W TK+P +NPREIVDN++ +I G++P P+ PWYK+
Sbjct: 860 KIEPEWYCPVIPTVLVNGAEGIGTAWSTKVPCYNPREIVDNMRALIDGKEPKPLIPWYKH 919
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEKDEVHP 777
F+G I+ D RFV NGE+A+++++ +EITEL + WT YK+T L ++ G +K
Sbjct: 920 FRGTIEQLDDQRFVCNGEVAVINNETIEITELPIRTWTQTYKETVLVPMMDGNDKQPAFI 979
Query: 778 GPGRKSHPRPIAPKSYKIDDD----SEEEEIEEVF 808
++ H K++ D S+EE + +VF
Sbjct: 980 TDFKEYHTDTTVKFVIKMNGDKLRASKEEGLHKVF 1014
Score = 51.2 bits (121), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 121/271 (44%), Gaps = 45/271 (16%)
Query: 841 QTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDA 900
Q++E + DYDYL+GM L+ E K++LL++ + K+ EL L++ DLW++DL+
Sbjct: 1158 QSKELANKLSDYDYLVGMAILKLSEEEKDKLLRESEAKLIELKSLEEMTWADLWNNDLNC 1217
Query: 901 ----LREKDKIHPCPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAPPPTKAS 956
L +++ + + A K Q+ +NR + AP +
Sbjct: 1218 FLAELEKQEAKEQADLDIQIKNAAKKLQSDVIGANR--------------KKAPVGLEVL 1263
Query: 957 PVKKKKPAAKRPAPKSDSSDLSDSDGDSDFASRKKKTAAAKKAKPAKKESEYSSTVCLFK 1016
P P A+R PK D+ + +KK ++ P KES+ T +
Sbjct: 1264 P----DPFAERVVPKIDAV--------KEKYEQKKACEGRRRKLPVVKESKPKGTDV--R 1309
Query: 1017 RFGRRNCNDG-----GLIPKSQREGAQDSDLENNCRLDEVERKEKEEEN-----SNITK- 1065
+F ++ NDG G+ K ++ +D + N ++E+ E + + SN K
Sbjct: 1310 KFFIQDKNDGQESQSGMKVKQRKSNNEDDQSDENNIVEELSVHESSDNSVIALPSNKRKD 1369
Query: 1066 -IKSKLKEKGSKKRNPLSSLDDTMPSAAGRR 1095
+K+ EK + +RN +++ D+ G+R
Sbjct: 1370 IVKNDDVEKKNARRN-IAAEDNKRTKKGGKR 1399
>gi|395816620|ref|XP_003781796.1| PREDICTED: DNA topoisomerase 2-beta [Otolemur garnettii]
Length = 1613
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/667 (58%), Positives = 468/667 (70%), Gaps = 107/667 (16%)
Query: 11 DVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRET 70
+ +N + K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + +
Sbjct: 19 NAAKNEESETANKNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDV 78
Query: 71 NHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPV 130
M RE+T+VPGLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPV
Sbjct: 79 G-MNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPV 137
Query: 131 VEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGR 190
VEHK EK++VP +IF G LLTSSNY+D+E KVTGGR
Sbjct: 138 VEHKVEKVYVPALIF-------------------------GQLLTSSNYDDDEKKVTGGR 172
Query: 191 NGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPD 250
NGYGAKLCNIFS+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PD
Sbjct: 173 NGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPD 232
Query: 251 LTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDED 309
L+KFKM LDKD+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE
Sbjct: 233 LSKFKMEKLDKDIVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDET 292
Query: 310 GDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVK 369
G +K+I+E N RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVK
Sbjct: 293 GVALKVIHELANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVK 352
Query: 370 KKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCL 429
KKNK G+++KPFQVKNHIW+FINCL
Sbjct: 353 KKNK-----------------------------------AGVSVKPFQVKNHIWVFINCL 377
Query: 430 IVNPTFDSQTKENMTLQKGSFGSTC----------------------------------- 454
I NPTFDSQTKENMTLQ SFGS C
Sbjct: 378 IENPTFDSQTKENMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKC 437
Query: 455 ----------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLR 504
+PKL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLR
Sbjct: 438 SSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLR 497
Query: 505 GKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGS 564
GK+LNVREA+HKQI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGS
Sbjct: 498 GKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGS 557
Query: 565 HIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHT 624
HIKGL+INFIHHNWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N
Sbjct: 558 HIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKA 617
Query: 625 YKIKYYK 631
+KIKYYK
Sbjct: 618 WKIKYYK 624
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 845 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 904
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 905 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 959
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Query: 832 EGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPT 891
+ + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E+N LK+K+P+
Sbjct: 1114 QNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKRKSPS 1171
Query: 892 DLWSDDLDALREK-DKI 907
DLW +DL A E+ DK+
Sbjct: 1172 DLWKEDLAAFVEELDKV 1188
>gi|301782147|ref|XP_002926491.1| PREDICTED: DNA topoisomerase 2-beta-like [Ailuropoda melanoleuca]
Length = 1608
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/655 (58%), Positives = 464/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 28 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVP 86
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 87 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 146
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 147 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 181
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD
Sbjct: 182 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKD 241
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 242 IVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 301
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 302 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 353
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 354 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 386
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 387 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 446
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 447 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 506
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 507 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 566
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 567 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 621
Score = 150 bits (379), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 842 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 901
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 902 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 956
Score = 65.9 bits (159), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 57/92 (61%), Gaps = 3/92 (3%)
Query: 832 EGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPT 891
+ + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E+N LK+K+P+
Sbjct: 1111 QNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDSKGREVNDLKRKSPS 1168
Query: 892 DLWSDDLDALREK-DKIHPCPGGNRTRGLALK 922
DLW +DL A E+ DK+ + G+A K
Sbjct: 1169 DLWKEDLAAFVEELDKVEAQEREDILAGMAGK 1200
>gi|292830|gb|AAA61209.1| DNA topoisomerase II (EC 5.99.1.3) [Homo sapiens]
Length = 1531
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/649 (59%), Positives = 464/649 (71%), Gaps = 107/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 27 RLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIF 85
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 86 DEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIF--- 142
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 143 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ EYKK FKQ W DNM + E+K + +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE G+ +K+I+E VN RWEV
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVC 300
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 301 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNK-------------- 346
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 347 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQP 385
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGSTC +PKL+DAN
Sbjct: 386 KSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDAN 445
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG +NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 446 DAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENA 505
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 506 EINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 565
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
R FLEEFITPI+K +K ++E++FYSLPEFEEWK T N +K+KYYK
Sbjct: 566 RHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYK 614
Score = 153 bits (387), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + REIV+NI+R++ GE+PLPM P YKN
Sbjct: 835 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEEPLPMLPSYKN 894
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V++GE+AIL+ +EI+EL V WT YK+ L+ +L+G EK
Sbjct: 895 FKGTIEELAPNQYVISGEVAILNSTTIEISELPVRTWTQTYKEQVLEPMLNGTEK 949
Score = 57.8 bits (138), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL + R++K EL+ LK+K+P+DLW +DL E
Sbjct: 1125 FNYLLDMPLWYLTKEKKDELCRLRNEKEQELDTLKRKSPSDLWKEDLATFIE 1176
>gi|19913406|ref|NP_001058.2| DNA topoisomerase 2-alpha [Homo sapiens]
gi|13959709|sp|P11388.3|TOP2A_HUMAN RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
topoisomerase II, alpha isozyme
gi|3869316|gb|AAC77388.1| topoisomerase II alpha [Homo sapiens]
gi|119581067|gb|EAW60663.1| topoisomerase (DNA) II alpha 170kDa, isoform CRA_c [Homo sapiens]
gi|187954517|gb|AAI40792.1| TOP2A protein [Homo sapiens]
gi|306921645|dbj|BAJ17902.1| topoisomerase (DNA) II alpha 170kDa [synthetic construct]
Length = 1531
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/649 (59%), Positives = 464/649 (71%), Gaps = 107/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 27 RLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIF 85
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 86 DEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIF--- 142
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 143 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ EYKK FKQ W DNM + E+K + +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE G+ +K+I+E VN RWEV
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVC 300
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 301 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNK-------------- 346
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 347 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQP 385
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGSTC +PKL+DAN
Sbjct: 386 KSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDAN 445
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG +NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 446 DAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENA 505
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 506 EINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 565
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
R FLEEFITPI+K +K ++E++FYSLPEFEEWK T N +K+KYYK
Sbjct: 566 RHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYK 614
Score = 153 bits (387), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + REIV+NI+R++ GE+PLPM P YKN
Sbjct: 835 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEEPLPMLPSYKN 894
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V++GE+AIL+ +EI+EL V WT YK+ L+ +L+G EK
Sbjct: 895 FKGTIEELAPNQYVISGEVAILNSTTIEISELPVRTWTQTYKEQVLEPMLNGTEK 949
Score = 57.4 bits (137), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL + R++K EL+ LK+K+P+DLW +DL E
Sbjct: 1125 FNYLLDMPLWYLTKEKKDELCRLRNEKEQELDTLKRKSPSDLWKEDLATFIE 1176
>gi|410214808|gb|JAA04623.1| topoisomerase (DNA) II alpha 170kDa [Pan troglodytes]
gi|410253008|gb|JAA14471.1| topoisomerase (DNA) II alpha 170kDa [Pan troglodytes]
gi|410293406|gb|JAA25303.1| topoisomerase (DNA) II alpha 170kDa [Pan troglodytes]
Length = 1531
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/649 (59%), Positives = 464/649 (71%), Gaps = 107/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 27 RLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIF 85
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 86 DEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIF--- 142
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 143 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ EYKK FKQ W DNM + E+K + +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE G+ +K+I+E VN RWEV
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVC 300
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 301 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNK-------------- 346
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 347 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQP 385
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGSTC +PKL+DAN
Sbjct: 386 KSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDAN 445
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG +NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 446 DAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENA 505
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 506 EINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 565
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
R FLEEFITPI+K +K ++E++FYSLPEFEEWK T N +K+KYYK
Sbjct: 566 RHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYK 614
Score = 153 bits (386), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + REIV+NI+R++ GE+PLPM P YKN
Sbjct: 835 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEEPLPMLPSYKN 894
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V++GE+AIL+ +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 895 FKGTIEELAPNQYVISGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 949
Score = 57.8 bits (138), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL + R++K EL+ LK+K+P+DLW +DL E
Sbjct: 1125 FNYLLDMPLWYLTKEKKDELCRLRNEKEQELDTLKRKSPSDLWKEDLATFIE 1176
>gi|348562672|ref|XP_003467133.1| PREDICTED: DNA topoisomerase 2-alpha-like [Cavia porcellus]
Length = 1561
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/649 (59%), Positives = 464/649 (71%), Gaps = 107/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + REIT+VPGLYKIF
Sbjct: 27 RLSIERIYQKKTQLEHILLRPDTYIGSVELLTQQMWVYDEDIG-INYREITFVPGLYKIF 85
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N ISVWNNGKGIPVVEHK EK++VP +IF
Sbjct: 86 DEILVNAADNKQRDPKMSCIRVTIDPENNLISVWNNGKGIPVVEHKVEKVYVPALIF--- 142
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS++F VE
Sbjct: 143 ----------------------GQLLTSSNYDDDERKVTGGRNGYGAKLCNIFSTRFTVE 180
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ +YKK FKQ W DNM + E+K S +D+T ITF PDL+KFKM LDKD+V L+
Sbjct: 181 TASKDYKKMFKQTWMDNMGRAGEMELKPFSGEDYTCITFQPDLSKFKMERLDKDIVALMV 240
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG KLPV F+ YV +Y D+ DE G+P+K+I+E VN RWEV
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVTGFRSYVDMYLKDKLDETGNPLKVIHEQVNQRWEVC 300
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 301 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLMDVVKKKNK-------------- 346
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 347 ---------------------GGIAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQV 385
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGSTC +PKL+DAN
Sbjct: 386 KSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNKIKGIPKLDDAN 445
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAGT+NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 446 DAGTRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKMLNVREASHKQIMENA 505
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 506 EINNIIKIVGLQYKKNYADEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 565
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+ FLEEFITPI+K +K ++EL+FYSLPEFEEWK T N +K+KYYK
Sbjct: 566 QHRFLEEFITPIVKVSKNKQELAFYSLPEFEEWKSSTPNHKKWKVKYYK 614
Score = 156 bits (395), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/115 (60%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVLVNGAEGIGTGW KIPN + REIV+NI+R++ GE+PLPM P YKN
Sbjct: 835 RVEPEWYIPIIPMVLVNGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEEPLPMLPSYKN 894
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V+NGE+AIL+ +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 895 FKGTIEELASNQYVINGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 949
Score = 63.9 bits (154), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 42/61 (68%), Gaps = 4/61 (6%)
Query: 847 DPDKD----YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALR 902
DP D ++YLL M W LT E+K+EL ++RD+K EL+ LKKK+P+DLW +DL A
Sbjct: 1116 DPAADSGPTFNYLLDMPLWYLTKEKKDELCRQRDEKEQELDTLKKKSPSDLWREDLAAFI 1175
Query: 903 E 903
E
Sbjct: 1176 E 1176
>gi|1066004|dbj|BAA07236.1| typr II DNA topoisomerase beta isoform [Mus musculus]
Length = 1612
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/649 (59%), Positives = 462/649 (71%), Gaps = 107/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VPGLYKIF
Sbjct: 36 KLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVPGLYKIF 94
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP +IF
Sbjct: 95 DEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIF--- 151
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 152 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 189
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD+V L+T
Sbjct: 190 TACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMT 249
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N RW+V
Sbjct: 250 RRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELANERWDVC 309
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 310 LTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVSKLIEVVKKKNK-------------- 355
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
G+++KPFQVKNHIW+FINCLI NPTFDSQTKENMTLQ
Sbjct: 356 ---------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQP 394
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGS C +PKL+DAN
Sbjct: 395 KSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIPKLDDAN 454
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 455 DAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENA 514
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 515 EINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 574
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 575 KHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 623
Score = 150 bits (380), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 844 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLEGLDPHPMLPNYKN 903
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 904 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 958
Score = 65.9 bits (159), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 831 AEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAP 890
++ + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E+N LK+K+P
Sbjct: 1112 SQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDTKGREVNDLKRKSP 1169
Query: 891 TDLWSDDLDALREK-DKI 907
+DLW +DL A E+ DK+
Sbjct: 1170 SDLWKEDLAAFVEELDKV 1187
>gi|432115884|gb|ELK37029.1| DNA topoisomerase 2-beta, partial [Myotis davidii]
Length = 1608
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/651 (59%), Positives = 463/651 (71%), Gaps = 107/651 (16%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYK 86
+ K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VPGLYK
Sbjct: 23 SKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVPGLYK 81
Query: 87 IFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFG 146
IFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP +IF
Sbjct: 82 IFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIF- 140
Query: 147 HLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFV 206
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF
Sbjct: 141 ------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFT 176
Query: 207 VETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDL 266
VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD+V L
Sbjct: 177 VETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVAL 236
Query: 267 ITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWE 325
+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N RW+
Sbjct: 237 MTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELANERWD 296
Query: 326 VAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 297 VCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK------------ 344
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTL 445
G+++KPFQVKNHIW+FINCLI NPTFDSQTKENMTL
Sbjct: 345 -----------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTL 381
Query: 446 QKGSFGSTC---------------------------------------------VPKLED 460
Q SFGS C +PKL+D
Sbjct: 382 QPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIPKLDD 441
Query: 461 ANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILE 520
ANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HKQI+E
Sbjct: 442 ANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIME 501
Query: 521 NAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPT 580
NAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+
Sbjct: 502 NAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPS 561
Query: 581 LLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 562 LLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 612
Score = 150 bits (380), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 96/133 (72%), Gaps = 5/133 (3%)
Query: 645 LHKVTSDSISMFI----GRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNI 700
L + D++ F+ R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N+
Sbjct: 815 LFPIVDDNLLKFLYDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNV 874
Query: 701 KRMIRGEDPLPMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYK 760
+RM+ G DP PM P YKNFKG I G +++ V+GEI ++D + +EITEL V WT YK
Sbjct: 875 RRMLDGLDPHPMLPNYKNFKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYK 934
Query: 761 D-TLDTLLHGAEK 772
+ L+ +L+G +K
Sbjct: 935 EQVLEPMLNGTDK 947
Score = 68.2 bits (165), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
Query: 822 QLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTE 881
Q + E + + + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E
Sbjct: 1092 QEKATEEEETQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDSKGRE 1149
Query: 882 LNILKKKAPTDLWSDDLDALREK-DKIHPCPGGNRTRGLALK 922
+N LK+K+P+DLW +DL A E+ DK+ + G+A K
Sbjct: 1150 VNDLKRKSPSDLWKEDLAAFVEELDKVEAQEREDLMAGMAGK 1191
>gi|441661001|ref|XP_003278314.2| PREDICTED: DNA topoisomerase 2-alpha [Nomascus leucogenys]
Length = 1499
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/649 (59%), Positives = 464/649 (71%), Gaps = 107/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 27 RLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIF 85
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 86 DEILVNAADNKQRDPKMSCIRVTIDPENNIISIWNNGKGIPVVEHKVEKMYVPALIF--- 142
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 143 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ EYKK FKQ W DNM + E+K + +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE G+ +K+I+E VN RWEV
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVC 300
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 301 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNK-------------- 346
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 347 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQP 385
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGSTC +PKL+DAN
Sbjct: 386 KSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDAN 445
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG +NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 446 DAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENA 505
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 506 EINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 565
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
R FLEEFITPI+K +K ++E++FYSLPEFEEWK T N +K+KYYK
Sbjct: 566 RHRFLEEFITPIVKVSKNKQEIAFYSLPEFEEWKSSTPNHKKWKVKYYK 614
Score = 100 bits (250), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/54 (75%), Positives = 49/54 (90%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPM 712
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + REIV+NI+R++ GE+PLPM
Sbjct: 835 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEEPLPM 888
Score = 57.8 bits (138), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL + R++K EL+ LK+K+P+DLW +DL E
Sbjct: 1093 FNYLLDMPLWYLTKEKKDELCRLRNEKEQELDTLKRKSPSDLWKEDLATFVE 1144
>gi|281341246|gb|EFB16830.1| hypothetical protein PANDA_016140 [Ailuropoda melanoleuca]
Length = 1599
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/655 (58%), Positives = 464/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 19 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVP 77
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 78 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 137
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 138 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 172
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD
Sbjct: 173 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKD 232
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 233 IVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 292
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 293 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 344
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 345 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 377
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 378 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 437
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 438 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 497
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 498 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 557
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 558 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 612
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 833 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 892
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 893 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 947
Score = 65.5 bits (158), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 48/72 (66%), Gaps = 2/72 (2%)
Query: 832 EGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPT 891
+ + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E+N LK+K+P+
Sbjct: 1102 QNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDSKGREVNDLKRKSPS 1159
Query: 892 DLWSDDLDALRE 903
DLW +DL A E
Sbjct: 1160 DLWKEDLAAFVE 1171
>gi|426348387|ref|XP_004041818.1| PREDICTED: DNA topoisomerase 2-alpha [Gorilla gorilla gorilla]
Length = 1531
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/649 (59%), Positives = 464/649 (71%), Gaps = 107/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 27 RLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIF 85
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 86 DEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIF--- 142
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 143 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ EYKK FKQ W DNM + E+K + +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE G+ +K+I+E VN RWEV
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVC 300
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 301 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNK-------------- 346
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 347 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQP 385
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGSTC +PKL+DAN
Sbjct: 386 KSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDAN 445
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG +NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 446 DAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENA 505
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 506 EINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 565
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
R FLEEFITPI+K +K ++E++FYSLPEFEEWK T N +K+KYYK
Sbjct: 566 RHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYK 614
Score = 153 bits (387), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + REIV+NI+R++ GE+PLPM P YKN
Sbjct: 835 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEEPLPMLPSYKN 894
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V++GE+AIL+ +EI+EL V WT YK+ L+ +L+G EK
Sbjct: 895 FKGTIEELAPNQYVISGEVAILNSTTIEISELPVRTWTQTYKEQVLEPMLNGTEK 949
Score = 57.4 bits (137), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL + R++K EL+ LK+K+P+DLW +DL E
Sbjct: 1125 FNYLLDMPLWYLTKEKKDELCRLRNEKEQELDTLKRKSPSDLWKEDLATFIE 1176
>gi|34328148|ref|NP_033435.2| DNA topoisomerase 2-beta [Mus musculus]
gi|76363529|sp|Q64511.2|TOP2B_MOUSE RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
topoisomerase II, beta isozyme
gi|32451610|gb|AAH54541.1| Topoisomerase (DNA) II beta [Mus musculus]
gi|54887373|gb|AAH41106.1| Topoisomerase (DNA) II beta [Mus musculus]
gi|148688695|gb|EDL20642.1| topoisomerase (DNA) II beta [Mus musculus]
Length = 1612
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/649 (59%), Positives = 462/649 (71%), Gaps = 107/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VPGLYKIF
Sbjct: 36 KLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVPGLYKIF 94
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP +IF
Sbjct: 95 DEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIF--- 151
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 152 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 189
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD+V L+T
Sbjct: 190 TACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMT 249
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N RW+V
Sbjct: 250 RRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELANERWDVC 309
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 310 LTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVSKLIEVVKKKNK-------------- 355
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
G+++KPFQVKNHIW+FINCLI NPTFDSQTKENMTLQ
Sbjct: 356 ---------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQP 394
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGS C +PKL+DAN
Sbjct: 395 KSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIPKLDDAN 454
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 455 DAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENA 514
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 515 EINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 574
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 575 KHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 623
Score = 150 bits (380), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 844 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLEGLDPHPMLPNYKN 903
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 904 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 958
Score = 65.9 bits (159), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 831 AEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAP 890
++ + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E+N LK+K+P
Sbjct: 1112 SQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDTKGREVNDLKRKSP 1169
Query: 891 TDLWSDDLDALREK-DKI 907
+DLW +DL A E+ DK+
Sbjct: 1170 SDLWKEDLAAFVEELDKV 1187
>gi|388454810|ref|NP_001252630.1| DNA topoisomerase 2-beta [Macaca mulatta]
gi|387273325|gb|AFJ70157.1| DNA topoisomerase 2-beta [Macaca mulatta]
Length = 1621
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/655 (58%), Positives = 464/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 37 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVG-MNCREVTFVP 95
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 96 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 155
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 156 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 190
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD
Sbjct: 191 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKD 250
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 251 IVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 310
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 311 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 362
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 363 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 395
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 396 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 455
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 456 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 515
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 516 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 575
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 576 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 630
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 851 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 910
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 911 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 965
Score = 68.6 bits (166), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 7/89 (7%)
Query: 824 ERQERQAAEGE----DDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKM 879
E QE+ A E E D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K
Sbjct: 1108 EAQEKAAEEDETQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKG 1165
Query: 880 TELNILKKKAPTDLWSDDLDALREK-DKI 907
E+N LK+K+P+DLW +DL A E+ DK+
Sbjct: 1166 REVNDLKRKSPSDLWKEDLAAFVEELDKV 1194
>gi|149040009|gb|EDL94093.1| similar to topoisomerase (DNA) II beta [Rattus norvegicus]
Length = 733
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/658 (58%), Positives = 464/658 (70%), Gaps = 107/658 (16%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
+ K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T
Sbjct: 27 TANKNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVT 85
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
+VPGLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++
Sbjct: 86 FVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVY 145
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCN 199
VP +IF G LLTSSNY+D+E KVTGGRNGYGAKLCN
Sbjct: 146 VPALIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCN 180
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSL 259
IFS+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL KFKM L
Sbjct: 181 IFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLAKFKMEKL 240
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYE 318
DKD+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E
Sbjct: 241 DKDIVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHE 300
Query: 319 NVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCT 378
N RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 301 LANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK----- 355
Query: 379 IIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQ 438
G+++KPFQVKNHIW+FINCLI NPTFDSQ
Sbjct: 356 ------------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQ 385
Query: 439 TKENMTLQKGSFGSTC-------------------------------------------- 454
TKENMTLQ SFGS C
Sbjct: 386 TKENMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIK 445
Query: 455 -VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREA 513
+PKL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA
Sbjct: 446 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREA 505
Query: 514 THKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINF 573
+HKQI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INF
Sbjct: 506 SHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINF 565
Query: 574 IHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
IHHNWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 566 IHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 623
>gi|345788922|ref|XP_534241.3| PREDICTED: DNA topoisomerase 2-beta [Canis lupus familiaris]
Length = 1644
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/655 (58%), Positives = 464/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 63 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVP 121
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 122 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 181
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 182 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 216
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD
Sbjct: 217 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKD 276
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 277 IVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 336
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 337 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 388
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 389 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 421
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 422 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 481
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 482 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 541
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 542 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 601
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 602 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 656
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 877 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 936
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 937 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 991
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 57/92 (61%), Gaps = 3/92 (3%)
Query: 832 EGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPT 891
+ + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E+N LK+K+P+
Sbjct: 1146 QNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKRKSPS 1203
Query: 892 DLWSDDLDALREK-DKIHPCPGGNRTRGLALK 922
DLW +DL A E+ DK+ + G+A K
Sbjct: 1204 DLWKEDLAAFVEELDKVEAQEREDILAGMAGK 1235
>gi|380798189|gb|AFE70970.1| DNA topoisomerase 2-beta, partial [Macaca mulatta]
Length = 1594
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/655 (58%), Positives = 464/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 10 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVG-MNCREVTFVP 68
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 69 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 128
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 129 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 163
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD
Sbjct: 164 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKD 223
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 224 IVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 283
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 284 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 335
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 336 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 368
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 369 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 428
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 429 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 488
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 489 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 548
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 549 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 603
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 824 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 883
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 884 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 938
Score = 68.6 bits (166), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 7/89 (7%)
Query: 824 ERQERQAAEGE----DDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKM 879
E QE+ A E E D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K
Sbjct: 1081 EAQEKAAEEDETQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKG 1138
Query: 880 TELNILKKKAPTDLWSDDLDALREK-DKI 907
E+N LK+K+P+DLW +DL A E+ DK+
Sbjct: 1139 REVNDLKRKSPSDLWKEDLAAFVEELDKV 1167
>gi|440908155|gb|ELR58207.1| DNA topoisomerase 2-beta, partial [Bos grunniens mutus]
Length = 1597
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/655 (58%), Positives = 464/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 19 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVP 77
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 78 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 137
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 138 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 172
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LD+D
Sbjct: 173 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDRD 232
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 233 IVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 292
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 293 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 344
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 345 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 377
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 378 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 437
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 438 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 497
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 498 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 557
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 558 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 612
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 833 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 892
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 893 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 947
Score = 63.2 bits (152), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 831 AEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAP 890
++ + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E++ LK+K+P
Sbjct: 1101 SQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKGREVSDLKRKSP 1158
Query: 891 TDLWSDDLDALREK 904
+DLW +DL A E+
Sbjct: 1159 SDLWKEDLAAFVEE 1172
>gi|410896057|ref|XP_003961516.1| PREDICTED: DNA topoisomerase 2-alpha-like [Takifugu rubripes]
Length = 1562
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/661 (58%), Positives = 465/661 (70%), Gaps = 107/661 (16%)
Query: 17 NGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERR 76
N P K K +MSVE+IYQKK+QLEHILLRPD+YIGSVEP+T+ MW+ + + + R
Sbjct: 11 NKPLEKTKKDPKRMSVERIYQKKTQLEHILLRPDSYIGSVEPVTQQMWVYDEDVG-LNCR 69
Query: 77 EITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDE 136
++T+VPGLYKIFDEILVNA DNKQRD M+CIK++++ E NTI+VWNNGKGIPVVEHK E
Sbjct: 70 DVTFVPGLYKIFDEILVNAADNKQRDKSMSCIKVSIDVENNTIAVWNNGKGIPVVEHKVE 129
Query: 137 KMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAK 196
K++VP +IF G LLTSSNY+D+E KVTGGRNGYGAK
Sbjct: 130 KVYVPALIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAK 164
Query: 197 LCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKM 256
LCNIFS+KF VETSC + KK+FKQ W DNM + I+S +++T ITF PDL KFKM
Sbjct: 165 LCNIFSTKFTVETSCKDSKKTFKQTWYDNMGRAGDANIRSFDGEEYTCITFRPDLAKFKM 224
Query: 257 TSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKI 315
+ LDKD + L+TRRAYD A +TK V+VF NG++LPV F+ YV LY D+ DE G+ + +
Sbjct: 225 SILDKDTLALMTRRAYDVAGATKGVRVFFNGKRLPVTGFRSYVDLYLKDKVDEIGNALNV 284
Query: 316 IYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDL 375
++E VN RWEV + S++GFQQVSFVNSIATTKGGRHVD V D +V ++IEVVKKKNK
Sbjct: 285 VHEVVNERWEVCLTMSEKGFQQVSFVNSIATTKGGRHVDYVADQVVSKLIEVVKKKNK-- 342
Query: 376 GCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTF 435
G+A+KPFQVKNHIW+F+NCL+ NPTF
Sbjct: 343 ---------------------------------AGVAVKPFQVKNHIWLFVNCLVENPTF 369
Query: 436 DSQTKENMTLQKGSFGSTC----------------------------------------- 454
DSQTKENMTLQ+ SFGSTC
Sbjct: 370 DSQTKENMTLQQKSFGSTCPLSDKFIKQATACGIVESIMNWVKFKAQTQLNKKCSAVKHT 429
Query: 455 ----VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNV 510
VPKL+DANDAG KNSI CTLILTEGDSAK+LAVSGLGVVGRD+YGVFPLRGK+LNV
Sbjct: 430 KIKGVPKLDDANDAGGKNSIGCTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLRGKMLNV 489
Query: 511 REATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLI 570
REA+ KQI+ENAEINN++KILGLQY K Y+ E +KTLRYG++MIMTDQDQDGSHIKGL+
Sbjct: 490 REASLKQIMENAEINNIIKILGLQYKKNYSDPESLKTLRYGKIMIMTDQDQDGSHIKGLL 549
Query: 571 INFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYY 630
INFIHHNWP+LLR F+EEFITPIIKA+ + +LSFYS+PEF WKE N ++KIKYY
Sbjct: 550 INFIHHNWPSLLRHNFIEEFITPIIKASHKKSQLSFYSIPEFNAWKESQANHKSWKIKYY 609
Query: 631 K 631
K
Sbjct: 610 K 610
Score = 154 bits (388), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 92/115 (80%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVLVNGAEGIGTGW +KIPN++ REIV+NI RM+ G++PLPM P YK
Sbjct: 831 RVEPEWYIPIIPMVLVNGAEGIGTGWASKIPNYDVREIVNNIHRMLNGDEPLPMLPSYKG 890
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I++ +++++ +GE+AI+D +EI+EL V WT YK+ L+ +L+G EK
Sbjct: 891 FKGTIEHVMNNQYMNSGEVAIIDSTTIEISELPVKSWTQTYKENVLEPMLNGTEK 945
Score = 89.4 bits (220), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 147/314 (46%), Gaps = 47/314 (14%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE------- 903
DY+YLL M W LT E+K EL K+RD K+TELN LKK++P DLW +DL A E
Sbjct: 1113 DYNYLLSMPMWFLTKEKKEELCKQRDAKLTELNTLKKRSPIDLWKEDLAAFSEELENSEA 1172
Query: 904 KDKIHPC----PGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAPPPTKASPVK 959
K+K + G + + L +K++TR P R + R V+S A KA
Sbjct: 1173 KEKENAAMPVKKGAGKGKTLKMKQETRPTPQGRRVIPR-----VTSTMKAEANRKAD--- 1224
Query: 960 KKKPAAKRPAPKSD---SSDLSDSDG-----DSDFASR---KKKTAAAKKAKPAKKESEY 1008
KK AKR D D D++G D A+R K KT A +KA + K+S
Sbjct: 1225 TKKGEAKRGKKIKDVVMQMDFEDAEGVMSSEDVGLAARLSKKTKTQAKEKAVKSSKQS-- 1282
Query: 1009 SSTVCLFKRFGRRNCNDGGLIPKSQREGAQ-DSDLENNCRL----DEVERKEKEEENSNI 1063
FK ++ + P S E Q DSD+E+ + ++V R+ K+ ++
Sbjct: 1283 ---TIQFKPVAKKPKKN----PWSDDETPQSDSDMEDEEEVAAPREQVGRRAKDTVKYSL 1335
Query: 1064 TKIKSK--LKEKGSKKRNPLSSLDDT-MPSAAGRRVEPKYEELLIKAEKAAAPKKPNEVL 1120
+ + + K + KR + S DD+ +P A PK E + K K+ + KP E
Sbjct: 1336 SDSEEEWNFHGKNAPKRKAVISDDDSFIPDADSPAPSPKVPEPVKKVAKSKSTSKPTESK 1395
Query: 1121 PGWESNLRPSADKA 1134
S+ + +A KA
Sbjct: 1396 SSSPSDDQVTASKA 1409
>gi|426256620|ref|XP_004021936.1| PREDICTED: DNA topoisomerase 2-beta [Ovis aries]
Length = 1652
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/655 (58%), Positives = 464/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 74 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVP 132
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 133 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 192
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 193 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 227
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LD+D
Sbjct: 228 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDRD 287
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 288 IVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 347
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 348 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 399
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 400 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 432
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 433 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 492
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 493 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 552
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 553 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 612
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 613 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 667
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 888 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 947
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 948 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 1002
Score = 63.9 bits (154), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
Query: 831 AEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAP 890
++ + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E++ LK+K+P
Sbjct: 1156 SQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKGREVSDLKRKSP 1213
Query: 891 TDLWSDDLDALREK-DKIHPCPGGNRTRGLALK 922
+DLW +DL A E+ DK+ + G+A K
Sbjct: 1214 SDLWKEDLAAFVEELDKVEAQEREDVLAGMAGK 1246
>gi|402861720|ref|XP_003895231.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-beta [Papio
anubis]
Length = 1599
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/655 (58%), Positives = 464/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 42 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVG-MNCREVTFVP 100
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 101 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 160
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 161 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 195
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD
Sbjct: 196 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKD 255
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 256 IVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 315
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 316 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 367
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 368 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 400
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 401 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 460
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 461 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 520
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 521 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 580
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 581 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 635
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 856 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 915
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 916 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 970
Score = 48.5 bits (114), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 862 SLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK-DKI 907
SLT E+ EL+K+RD K E+N LK+K+P+DLW +DL A E+ DK+
Sbjct: 1126 SLTKEKVEELIKQRDAKGREVNDLKRKSPSDLWKEDLAAFVEELDKV 1172
>gi|355747103|gb|EHH51717.1| hypothetical protein EGM_11149, partial [Macaca fascicularis]
Length = 1603
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/655 (58%), Positives = 463/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 19 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVG-MNCREVTFVP 77
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 78 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPEANIISIWNNGKGIPVVEHKVEKVYVPA 137
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 138 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 172
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD
Sbjct: 173 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKD 232
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 233 IVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 292
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 293 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 344
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 345 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 377
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 378 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 437
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 438 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 497
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 498 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 557
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 558 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 612
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 833 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 892
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 893 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 947
Score = 68.6 bits (166), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 7/89 (7%)
Query: 824 ERQERQAAEGE----DDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKM 879
E QE+ A E E D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K
Sbjct: 1090 EAQEKAAEEDETQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKG 1147
Query: 880 TELNILKKKAPTDLWSDDLDALREK-DKI 907
E+N LK+K+P+DLW +DL A E+ DK+
Sbjct: 1148 REVNDLKRKSPSDLWKEDLAAFVEELDKV 1176
>gi|417414445|gb|JAA53515.1| Putative dna topoisomerase type ii, partial [Desmodus rotundus]
Length = 1639
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/651 (59%), Positives = 463/651 (71%), Gaps = 107/651 (16%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYK 86
+ K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VPGLYK
Sbjct: 44 SKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVPGLYK 102
Query: 87 IFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFG 146
IFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP +IF
Sbjct: 103 IFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIF- 161
Query: 147 HLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFV 206
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF
Sbjct: 162 ------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFT 197
Query: 207 VETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDL 266
VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD+V L
Sbjct: 198 VETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVAL 257
Query: 267 ITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWE 325
+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N RW+
Sbjct: 258 MTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELANERWD 317
Query: 326 VAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 318 VCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK------------ 365
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTL 445
G+++KPFQVKNHIW+FINCLI NPTFDSQTKENMTL
Sbjct: 366 -----------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTL 402
Query: 446 QKGSFGSTC---------------------------------------------VPKLED 460
Q SFGS C +PKL+D
Sbjct: 403 QPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIPKLDD 462
Query: 461 ANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILE 520
ANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HKQI+E
Sbjct: 463 ANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIME 522
Query: 521 NAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPT 580
NAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+
Sbjct: 523 NAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPS 582
Query: 581 LLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 583 LLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 633
Score = 149 bits (377), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 854 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 913
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 914 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 968
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
Query: 831 AEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAP 890
++ + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E+N LK+K+P
Sbjct: 1122 SQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDSKGREVNDLKRKSP 1179
Query: 891 TDLWSDDLDALREK-DKIHPCPGGNRTRGLALK 922
+DLW +DL A E+ DK+ + G+A K
Sbjct: 1180 SDLWKEDLAAFVEELDKVEAQEREDIMAGMAGK 1212
>gi|359080606|ref|XP_002698796.2| PREDICTED: DNA topoisomerase 2-beta [Bos taurus]
Length = 1707
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/655 (58%), Positives = 464/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 129 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVP 187
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 188 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 247
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 248 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 282
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LD+D
Sbjct: 283 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDRD 342
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 343 IVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 402
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 403 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 454
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 455 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 487
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 488 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 547
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 548 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 607
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 608 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 667
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 668 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 722
Score = 149 bits (377), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 943 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 1002
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 1003 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 1057
Score = 63.9 bits (154), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
Query: 831 AEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAP 890
++ + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E++ LK+K+P
Sbjct: 1211 SQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKGREVSDLKRKSP 1268
Query: 891 TDLWSDDLDALREK-DKIHPCPGGNRTRGLALK 922
+DLW +DL A E+ DK+ + G+A K
Sbjct: 1269 SDLWKEDLAAFVEELDKVEAQEREDVLAGMAGK 1301
>gi|10121857|gb|AAG13401.1|AF285155_1 topoisomerase II alpha-2 [Gallus gallus]
Length = 1586
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/692 (57%), Positives = 471/692 (68%), Gaps = 142/692 (20%)
Query: 21 PKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITY 80
PK ++SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + R++T+
Sbjct: 20 PKADGAQKRLSVERIYQKKTQLEHILLRPDTYIGSVETVTQQMWVFDEDVG-LNCRDVTF 78
Query: 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
VPGLYKIFDEILVNA DNKQRD M+CIK+T++ E NTISVWNNGKGIPVVEHK EK++V
Sbjct: 79 VPGLYKIFDEILVNAADNKQRDKSMSCIKVTIDPENNTISVWNNGKGIPVVEHKVEKVYV 138
Query: 141 PTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNI 200
P +IF G LLTSSNY+D+E KVTGGRNGYGAKLCNI
Sbjct: 139 PALIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNI 173
Query: 201 FSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLD 260
FS+KF VET+C EYKK FKQ W DNM K +K +D+T +TF PDL+KFKMT LD
Sbjct: 174 FSTKFTVETACREYKKLFKQTWTDNMGKAGEMTLKHFDGEDYTCVTFQPDLSKFKMTILD 233
Query: 261 KDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYEN 319
KD+V L++RRAYD A STKDVKVFLNG++LPVK F+ YV LY D+ DE G+ +K+I+E
Sbjct: 234 KDIVALMSRRAYDIAGSTKDVKVFLNGKRLPVKGFRSYVDLYLKDKVDETGNALKVIHEE 293
Query: 320 VNPRWEVAIAPSDRGFQQVSFVNSIATTK------------------------------- 348
VN RWEV + S++GFQQVSFVNSIATTK
Sbjct: 294 VNSRWEVCLTLSEKGFQQVSFVNSIATTKVILSSCSHIHFIFFLLALCFVSLETPRALWS 353
Query: 349 ----GGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDI 404
GGRHVD V D IV ++I+VVKKKNK+
Sbjct: 354 HFPLGGRHVDYVADQIVTKLIDVVKKKNKN------------------------------ 383
Query: 405 GVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC---------- 454
G+ +KPFQVKNH+WIF+N LI NPTFDSQTKENMTLQ SFGSTC
Sbjct: 384 -----GVGVKPFQVKNHMWIFVNSLIENPTFDSQTKENMTLQAKSFGSTCKLSEKFIKGA 438
Query: 455 -----------------------------------VPKLEDANDAGTKNSIDCTLILTEG 479
VPKL+DANDAG+KNSIDCTLILTEG
Sbjct: 439 VGCGIVESILNWVKFKAQTQLNKKCSAVKHTKIKGVPKLDDANDAGSKNSIDCTLILTEG 498
Query: 480 DSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKY 539
DSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENAEINN++KI+GLQY K Y
Sbjct: 499 DSAKTLAVSGLGVVGRDKYGVFPLRGKMLNVREASHKQIMENAEINNIIKIVGLQYKKNY 558
Query: 540 TTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATK 599
E +K+LRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LLR FLEEFITPIIK +K
Sbjct: 559 EDRESLKSLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHNFLEEFITPIIKVSK 618
Query: 600 AREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+EE+ FYS+PEFEEWK T N++++KIKYYK
Sbjct: 619 NKEEIPFYSIPEFEEWKSSTQNYNSWKIKYYK 650
Score = 151 bits (381), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWY+PIIPMVL+NGAEGIGTGW KIPN + RE V+NI+ ++ G++PLPM P YKN
Sbjct: 871 RVEPEWYMPIIPMVLINGAEGIGTGWSCKIPNFDIRETVNNIRCLLDGKEPLPMLPSYKN 930
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG ID G +++V++GE++ILD +EITEL V WT YK+ L+ +L+G EK
Sbjct: 931 FKGTIDELGPNQYVISGEVSILDSTTIEITELPVRTWTQTYKEQVLEPMLNGTEK 985
Score = 63.5 bits (153), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
D++YLL M W LT E+K+EL K+RD+K EL LK K+P+DLW +DL A E+
Sbjct: 1151 DFNYLLNMPLWYLTKEKKDELCKQRDNKDKELEDLKHKSPSDLWKEDLAAFVEE 1204
>gi|332215374|ref|XP_003256818.1| PREDICTED: DNA topoisomerase 2-beta [Nomascus leucogenys]
Length = 1621
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/655 (58%), Positives = 464/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 37 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVG-MNCREVTFVP 95
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 96 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 155
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 156 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 190
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD
Sbjct: 191 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKD 250
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S + VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 251 IVALMTRRAYDLAGSCRGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 310
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 311 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 362
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIWIFINCLI NPTFDSQTKE
Sbjct: 363 ---------------------------AGVSVKPFQVKNHIWIFINCLIENPTFDSQTKE 395
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 396 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 455
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 456 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 515
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 516 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 575
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 576 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 630
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 851 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 910
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 911 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 965
Score = 68.6 bits (166), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 7/89 (7%)
Query: 824 ERQERQAAEGE----DDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKM 879
E QE+ A E E D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K
Sbjct: 1108 EAQEKAAEEDETQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKG 1165
Query: 880 TELNILKKKAPTDLWSDDLDALREK-DKI 907
E+N LK+K+P+DLW +DL A E+ DK+
Sbjct: 1166 REVNDLKRKSPSDLWKEDLAAFVEELDKV 1194
>gi|3024753|sp|Q64399.1|TOP2B_CRILO RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
topoisomerase II, beta isozyme
gi|2137065|pir||S59969 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) isoform beta -
Chinese hamster
gi|790988|emb|CAA60173.1| DNA topoisomerase (ATP-hydrolysing) [Cricetulus longicaudatus]
Length = 1612
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/655 (58%), Positives = 463/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 30 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVP 88
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 89 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 148
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 149 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 183
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL KFKM LDKD
Sbjct: 184 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLAKFKMEKLDKD 243
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 244 IVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 303
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 304 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 355
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 356 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 388
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 389 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 448
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 449 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 508
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 509 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 568
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 569 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 623
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 844 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 903
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 904 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 958
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Query: 832 EGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPT 891
+ + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E+N LK+K+P+
Sbjct: 1113 QNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDTKGREVNDLKRKSPS 1170
Query: 892 DLWSDDLDALREK-DKI 907
DLW +DL A E+ DK+
Sbjct: 1171 DLWKEDLAAFVEELDKV 1187
>gi|3869382|gb|AAC77432.1| DNA topoisomerase II beta [Homo sapiens]
Length = 1598
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/655 (58%), Positives = 464/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 14 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVG-MNCREVTFVP 72
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 73 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 132
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 133 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 167
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD
Sbjct: 168 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKD 227
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S + VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 228 IVALMTRRAYDLAGSCRGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 287
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 288 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 339
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 340 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 372
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 373 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 432
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 433 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 492
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 493 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 552
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 553 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 607
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 828 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 887
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 888 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 942
Score = 68.6 bits (166), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 7/89 (7%)
Query: 824 ERQERQAAEGE----DDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKM 879
E QE+ A E E D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K
Sbjct: 1085 EAQEKAAEEDETQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKG 1142
Query: 880 TELNILKKKAPTDLWSDDLDALREK-DKI 907
E+N LK+K+P+DLW +DL A E+ DK+
Sbjct: 1143 REVNDLKRKSPSDLWKEDLAAFVEELDKV 1171
>gi|417413901|gb|JAA53260.1| Putative dna topoisomerase type ii, partial [Desmodus rotundus]
Length = 1603
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/651 (59%), Positives = 463/651 (71%), Gaps = 107/651 (16%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYK 86
+ K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VPGLYK
Sbjct: 23 SKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVPGLYK 81
Query: 87 IFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFG 146
IFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP +IF
Sbjct: 82 IFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIF- 140
Query: 147 HLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFV 206
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF
Sbjct: 141 ------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFT 176
Query: 207 VETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDL 266
VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD+V L
Sbjct: 177 VETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVAL 236
Query: 267 ITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWE 325
+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N RW+
Sbjct: 237 MTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELANERWD 296
Query: 326 VAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 297 VCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK------------ 344
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTL 445
G+++KPFQVKNHIW+FINCLI NPTFDSQTKENMTL
Sbjct: 345 -----------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTL 381
Query: 446 QKGSFGSTC---------------------------------------------VPKLED 460
Q SFGS C +PKL+D
Sbjct: 382 QPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIPKLDD 441
Query: 461 ANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILE 520
ANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HKQI+E
Sbjct: 442 ANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIME 501
Query: 521 NAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPT 580
NAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+
Sbjct: 502 NAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPS 561
Query: 581 LLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 562 LLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 612
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 833 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 892
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 893 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 947
Score = 66.6 bits (161), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
Query: 831 AEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAP 890
++ + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E+N LK+K+P
Sbjct: 1101 SQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDSKGREVNDLKRKSP 1158
Query: 891 TDLWSDDLDALREK-DKIHPCPGGNRTRGLALK 922
+DLW +DL A E+ DK+ + G+A K
Sbjct: 1159 SDLWKEDLAAFVEELDKVEAQEREDIMAGMAGK 1191
>gi|296472299|tpg|DAA14414.1| TPA: topoisomerase (DNA) II beta 180kDa [Bos taurus]
Length = 1707
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/655 (58%), Positives = 464/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 129 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVP 187
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 188 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 247
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 248 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 282
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LD+D
Sbjct: 283 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDRD 342
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 343 IVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 402
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 403 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 454
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 455 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 487
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 488 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 547
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 548 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 607
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 608 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 667
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 668 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 722
Score = 149 bits (377), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 943 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 1002
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 1003 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 1057
Score = 63.5 bits (153), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 831 AEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAP 890
++ + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E++ LK+K+P
Sbjct: 1211 SQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKGREVSDLKRKSP 1268
Query: 891 TDLWSDDLDALREK 904
+DLW +DL A E+
Sbjct: 1269 SDLWKEDLAAFVEE 1282
>gi|354474033|ref|XP_003499236.1| PREDICTED: DNA topoisomerase 2-beta-like [Cricetulus griseus]
Length = 1726
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/655 (58%), Positives = 463/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 144 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVP 202
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 203 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 262
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 263 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 297
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL KFKM LDKD
Sbjct: 298 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLAKFKMEKLDKD 357
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 358 IVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 417
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 418 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 469
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 470 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 502
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 503 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 562
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 563 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 622
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 623 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 682
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 683 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 737
Score = 149 bits (377), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 958 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 1017
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 1018 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 1072
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Query: 832 EGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPT 891
+ + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E+N LK+K+P+
Sbjct: 1227 QNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDTKGREVNDLKRKSPS 1284
Query: 892 DLWSDDLDALREK-DKI 907
DLW +DL A E+ DK+
Sbjct: 1285 DLWKEDLAAFVEELDKV 1301
>gi|395826472|ref|XP_003786442.1| PREDICTED: DNA topoisomerase 2-alpha isoform 2 [Otolemur garnettii]
Length = 1532
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/639 (59%), Positives = 459/639 (71%), Gaps = 107/639 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 27 RLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIF 85
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 86 DEILVNAADNKQRDPKMSCIRVTIDSENNLISIWNNGKGIPVVEHKVEKMYVPALIF--- 142
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 143 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ EYKK FKQ WKDNM + E+K + +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 181 TASREYKKMFKQTWKDNMGRSGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE G+P+K+I+E VN RWEV
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKVDETGNPLKVIHEQVNQRWEVC 300
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 301 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNK-------------- 346
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 347 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQA 385
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGSTC +PKL+DAN
Sbjct: 386 KSFGSTCQLSEKFIKAAVGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDAN 445
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG +NS DCTLILTEGDSAK+LAVSGLGVVGRDKYG+FPLRGKLLNVREA+HKQI+ENA
Sbjct: 446 DAGGRNSTDCTLILTEGDSAKTLAVSGLGVVGRDKYGIFPLRGKLLNVREASHKQIMENA 505
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 506 EINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 565
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN 621
R FLEEFITPI+K +K ++E++FYS+PEFEEWK T N
Sbjct: 566 RHRFLEEFITPIVKVSKNKQEIAFYSIPEFEEWKNSTPN 604
Score = 152 bits (385), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 835 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLMDGEEPLPMLPSYKN 894
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V++GE+AIL+ +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 895 FKGTIEELAPNQYVISGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 949
Score = 62.4 bits (150), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 824 ERQERQAAEGEDDEAGSQTQEEE-----DPDKDYDYLLGMTFWSLTMERKNELLKKRDDK 878
E Q++ E E++E+ ++ E+ D ++YLL M W LT E+K+EL K R++K
Sbjct: 1092 EAQQKVPDEDENEESDTEKDTEKSDSVTDSGPTFNYLLDMPLWYLTKEKKDELCKLRNEK 1151
Query: 879 MTELNILKKKAPTDLWSDDLDALRE 903
EL+ LKKK P DLW +DL E
Sbjct: 1152 EQELDTLKKKTPADLWKEDLAVFIE 1176
>gi|395826470|ref|XP_003786441.1| PREDICTED: DNA topoisomerase 2-alpha isoform 1 [Otolemur garnettii]
Length = 1533
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/639 (59%), Positives = 459/639 (71%), Gaps = 107/639 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 27 RLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIF 85
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 86 DEILVNAADNKQRDPKMSCIRVTIDSENNLISIWNNGKGIPVVEHKVEKMYVPALIF--- 142
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 143 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ EYKK FKQ WKDNM + E+K + +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 181 TASREYKKMFKQTWKDNMGRSGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE G+P+K+I+E VN RWEV
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKVDETGNPLKVIHEQVNQRWEVC 300
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 301 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNK-------------- 346
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 347 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQA 385
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGSTC +PKL+DAN
Sbjct: 386 KSFGSTCQLSEKFIKAAVGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDAN 445
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG +NS DCTLILTEGDSAK+LAVSGLGVVGRDKYG+FPLRGKLLNVREA+HKQI+ENA
Sbjct: 446 DAGGRNSTDCTLILTEGDSAKTLAVSGLGVVGRDKYGIFPLRGKLLNVREASHKQIMENA 505
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 506 EINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 565
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN 621
R FLEEFITPI+K +K ++E++FYS+PEFEEWK T N
Sbjct: 566 RHRFLEEFITPIVKVSKNKQEIAFYSIPEFEEWKNSTPN 604
Score = 152 bits (385), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 835 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLMDGEEPLPMLPSYKN 894
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V++GE+AIL+ +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 895 FKGTIEELAPNQYVISGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 949
Score = 62.0 bits (149), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 824 ERQERQAAEGEDDEAGSQTQEEE-----DPDKDYDYLLGMTFWSLTMERKNELLKKRDDK 878
E Q++ E E++E+ ++ E+ D ++YLL M W LT E+K+EL K R++K
Sbjct: 1092 EAQQKVPDEDENEESDTEKDTEKSDSVTDSGPTFNYLLDMPLWYLTKEKKDELCKLRNEK 1151
Query: 879 MTELNILKKKAPTDLWSDDLDALRE 903
EL+ LKKK P DLW +DL E
Sbjct: 1152 EQELDTLKKKTPADLWKEDLAVFIE 1176
>gi|20141946|sp|Q02880.3|TOP2B_HUMAN RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
topoisomerase II, beta isozyme
Length = 1626
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/655 (58%), Positives = 464/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 42 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVG-MNCREVTFVP 100
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 101 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 160
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 161 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 195
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD
Sbjct: 196 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKD 255
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S + VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 256 IVALMTRRAYDLAGSCRGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 315
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 316 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 367
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 368 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 400
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 401 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 460
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 461 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 520
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 521 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 580
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 581 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 635
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 856 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 915
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 916 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 970
Score = 68.6 bits (166), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 7/89 (7%)
Query: 824 ERQERQAAEGE----DDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKM 879
E QE+ A E E D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K
Sbjct: 1113 EAQEKAAEEDETQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKG 1170
Query: 880 TELNILKKKAPTDLWSDDLDALREK-DKI 907
E+N LK+K+P+DLW +DL A E+ DK+
Sbjct: 1171 REVNDLKRKSPSDLWKEDLAAFVEELDKV 1199
>gi|403290004|ref|XP_003936124.1| PREDICTED: DNA topoisomerase 2-beta [Saimiri boliviensis
boliviensis]
Length = 1715
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/655 (58%), Positives = 464/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 132 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVP 190
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 191 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 250
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 251 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 285
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD
Sbjct: 286 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKD 345
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 346 IVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 405
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 406 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 457
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 458 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 490
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 491 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 550
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 551 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 610
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 611 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 670
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 671 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 725
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 946 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 1005
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 1006 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 1060
Score = 65.9 bits (159), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Query: 832 EGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPT 891
+ + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E+N LK+K+P+
Sbjct: 1215 QNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKRKSPS 1272
Query: 892 DLWSDDLDALREK-DKI 907
DLW +DL A E+ DK+
Sbjct: 1273 DLWKEDLAAFVEELDKV 1289
>gi|397512028|ref|XP_003826360.1| PREDICTED: DNA topoisomerase 2-beta [Pan paniscus]
Length = 1618
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/655 (58%), Positives = 464/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 34 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVG-MNCREVTFVP 92
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 93 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 152
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 153 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 187
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD
Sbjct: 188 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKD 247
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S + VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 248 IVALMTRRAYDLAGSCRGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 307
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 308 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 359
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 360 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 392
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 393 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 452
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 453 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 512
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 513 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 572
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 573 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 627
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 848 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 907
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 908 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 962
Score = 68.6 bits (166), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 7/89 (7%)
Query: 824 ERQERQAAEGE----DDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKM 879
E QE+ A E E D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K
Sbjct: 1105 EAQEKAAEEDETQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKG 1162
Query: 880 TELNILKKKAPTDLWSDDLDALREK-DKI 907
E+N LK+K+P+DLW +DL A E+ DK+
Sbjct: 1163 REVNDLKRKSPSDLWKEDLAAFVEELDKV 1191
>gi|410353945|gb|JAA43576.1| topoisomerase (DNA) II beta 180kDa [Pan troglodytes]
Length = 1621
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/655 (58%), Positives = 464/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 37 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVG-MNCREVTFVP 95
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 96 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 155
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 156 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 190
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD
Sbjct: 191 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKD 250
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S + VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 251 IVALMTRRAYDLAGSCRGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 310
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 311 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 362
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 363 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 395
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 396 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 455
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 456 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 515
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 516 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 575
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 576 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 630
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 851 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 910
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 911 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 965
Score = 68.6 bits (166), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 7/89 (7%)
Query: 824 ERQERQAAEGE----DDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKM 879
E QE+ A E E D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K
Sbjct: 1108 EAQEKAAEEDETQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKG 1165
Query: 880 TELNILKKKAPTDLWSDDLDALREK-DKI 907
E+N LK+K+P+DLW +DL A E+ DK+
Sbjct: 1166 REVNDLKRKSPSDLWKEDLAAFVEELDKV 1194
>gi|19913408|ref|NP_001059.2| DNA topoisomerase 2-beta [Homo sapiens]
gi|119584761|gb|EAW64357.1| topoisomerase (DNA) II beta 180kDa, isoform CRA_a [Homo sapiens]
gi|162317664|gb|AAI56331.1| Topoisomerase (DNA) II beta 180kDa [synthetic construct]
gi|162318196|gb|AAI57119.1| Topoisomerase (DNA) II beta 180kDa [synthetic construct]
Length = 1621
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/655 (58%), Positives = 464/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 37 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVG-MNCREVTFVP 95
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 96 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 155
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 156 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 190
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD
Sbjct: 191 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKD 250
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S + VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 251 IVALMTRRAYDLAGSCRGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 310
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 311 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 362
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 363 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 395
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 396 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 455
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 456 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 515
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 516 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 575
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 576 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 630
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 851 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 910
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 911 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 965
Score = 68.6 bits (166), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 7/89 (7%)
Query: 824 ERQERQAAEGE----DDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKM 879
E QE+ A E E D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K
Sbjct: 1108 EAQEKAAEEDETQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKG 1165
Query: 880 TELNILKKKAPTDLWSDDLDALREK-DKI 907
E+N LK+K+P+DLW +DL A E+ DK+
Sbjct: 1166 REVNDLKRKSPSDLWKEDLAAFVEELDKV 1194
>gi|348588584|ref|XP_003480045.1| PREDICTED: DNA topoisomerase 2-beta-like [Cavia porcellus]
Length = 1991
Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/655 (58%), Positives = 464/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 409 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQMMWVYDDDVG-MNCREVTFVP 467
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 468 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 527
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 528 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 562
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD
Sbjct: 563 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKD 622
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 623 IVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 682
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 683 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 734
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 735 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 767
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 768 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 827
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 828 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 887
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 888 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 947
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 948 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 1002
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 1223 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLEGLDPHPMLPNYKN 1282
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 1283 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 1337
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Query: 832 EGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPT 891
+ + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E+N LK+K+P+
Sbjct: 1492 QNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKRKSPS 1549
Query: 892 DLWSDDLDALREK-DKI 907
DLW +DL A E+ DK+
Sbjct: 1550 DLWKEDLAAFVEELDKV 1566
>gi|385648284|ref|NP_001245315.1| topoisomerase (DNA) II beta 180kDa [Sus scrofa]
Length = 1614
Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/655 (58%), Positives = 463/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 34 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVP 92
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 93 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 152
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 153 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 187
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL KFKM LDKD
Sbjct: 188 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLAKFKMEKLDKD 247
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 248 IVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 307
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 308 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 359
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 360 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 392
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 393 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 452
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 453 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 512
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 513 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 572
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++EL+FYS+PEF+EWK+ N +KIKYYK
Sbjct: 573 NWPSLLKHGFLEEFITPIVKASKNKQELAFYSIPEFDEWKKHIENQKAWKIKYYK 627
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 848 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 907
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 908 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 962
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 57/92 (61%), Gaps = 3/92 (3%)
Query: 832 EGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPT 891
+ + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E+N LK+K+P+
Sbjct: 1117 QNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKRKSPS 1174
Query: 892 DLWSDDLDALREK-DKIHPCPGGNRTRGLALK 922
DLW +DL A E+ DK+ + G+A K
Sbjct: 1175 DLWKEDLAAFVEELDKVEAQEREDVLAGMAGK 1206
>gi|119584763|gb|EAW64359.1| topoisomerase (DNA) II beta 180kDa, isoform CRA_c [Homo sapiens]
Length = 1626
Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/655 (58%), Positives = 464/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 42 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVG-MNCREVTFVP 100
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 101 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 160
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 161 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 195
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD
Sbjct: 196 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKD 255
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S + VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 256 IVALMTRRAYDLAGSCRGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 315
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 316 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 367
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 368 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 400
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 401 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 460
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 461 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 520
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 521 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 580
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 581 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 635
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 856 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 915
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 916 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 970
Score = 68.2 bits (165), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 6/85 (7%)
Query: 824 ERQERQAAEGE----DDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKM 879
E QE+ A E E D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K
Sbjct: 1113 EAQEKAAEEDETQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKG 1170
Query: 880 TELNILKKKAPTDLWSDDLDALREK 904
E+N LK+K+P+DLW +DL A E+
Sbjct: 1171 REVNDLKRKSPSDLWKEDLAAFVEE 1195
>gi|37231|emb|CAA48197.1| DNA topoisomerase II [Homo sapiens]
Length = 1621
Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/655 (58%), Positives = 464/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 37 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVG-MNCREVTFVP 95
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 96 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 155
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 156 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 190
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD
Sbjct: 191 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKD 250
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S + VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 251 IVALMTRRAYDLAGSCRGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 310
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 311 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 362
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 363 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 395
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 396 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 455
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 456 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 515
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 516 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 575
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 576 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 630
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 851 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 910
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 911 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 965
Score = 68.6 bits (166), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 7/89 (7%)
Query: 824 ERQERQAAEGE----DDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKM 879
E QE+ A E E D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K
Sbjct: 1108 EAQEKAAEEDETQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKG 1165
Query: 880 TELNILKKKAPTDLWSDDLDALREK-DKI 907
E+N LK+K+P+DLW +DL A E+ DK+
Sbjct: 1166 REVNDLKRKSPSDLWKEDLAAFVEELDKV 1194
>gi|119584762|gb|EAW64358.1| topoisomerase (DNA) II beta 180kDa, isoform CRA_b [Homo sapiens]
Length = 1643
Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/655 (58%), Positives = 464/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 37 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVG-MNCREVTFVP 95
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 96 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 155
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 156 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 190
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD
Sbjct: 191 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKD 250
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S + VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 251 IVALMTRRAYDLAGSCRGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 310
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 311 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 362
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 363 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 395
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 396 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 455
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 456 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 515
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 516 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 575
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 576 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 630
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 851 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 910
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 911 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 965
Score = 68.2 bits (165), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 6/85 (7%)
Query: 824 ERQERQAAEGE----DDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKM 879
E QE+ A E E D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K
Sbjct: 1108 EAQEKAAEEDETQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKG 1165
Query: 880 TELNILKKKAPTDLWSDDLDALREK 904
E+N LK+K+P+DLW +DL A E+
Sbjct: 1166 REVNDLKRKSPSDLWKEDLAAFVEE 1190
>gi|296228227|ref|XP_002759705.1| PREDICTED: DNA topoisomerase 2-beta-like [Callithrix jacchus]
Length = 1620
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/655 (58%), Positives = 464/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 37 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVP 95
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 96 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 155
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 156 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 190
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD
Sbjct: 191 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKD 250
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+T+RAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 251 IVALMTKRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 310
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 311 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 362
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 363 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 395
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 396 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 455
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 456 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 515
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 516 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 575
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 576 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 630
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 851 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 910
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 911 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 965
Score = 65.5 bits (158), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Query: 832 EGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPT 891
+ + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E+N LK+K+P+
Sbjct: 1120 QNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKRKSPS 1177
Query: 892 DLWSDDLDALREK-DKI 907
DLW +DL A E+ DK+
Sbjct: 1178 DLWKEDLAAFVEELDKV 1194
>gi|358422132|ref|XP_001254710.4| PREDICTED: DNA topoisomerase 2-beta [Bos taurus]
Length = 1908
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/655 (58%), Positives = 464/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 40 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVP 98
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 99 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 158
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 159 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 193
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LD+D
Sbjct: 194 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDRD 253
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 254 IVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 313
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 314 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 365
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 366 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 398
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 399 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 458
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 459 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 518
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 519 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 578
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 579 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 633
Score = 149 bits (377), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 854 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 913
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 914 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 968
Score = 64.7 bits (156), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 831 AEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAP 890
++ + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E++ LK+K+P
Sbjct: 1122 SQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKGREVSDLKRKSP 1179
Query: 891 TDLWSDDLDALREK-DKI 907
+DLW +DL A E+ DK+
Sbjct: 1180 SDLWKEDLAAFVEELDKV 1197
>gi|4218221|emb|CAA09762.1| DNA topoisomerase (ATP-hydrolysing) [Homo sapiens]
Length = 1531
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/649 (59%), Positives = 463/649 (71%), Gaps = 107/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 27 RLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIF 85
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 86 DEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIF--- 142
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF V+
Sbjct: 143 ----------------------GQLLTSSNYHDDEKKVTGGRNGYGAKLCNIFSTKFTVQ 180
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ EYKK FKQ W DNM + E+K + +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE G+ +K+I+E VN RWEV
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVC 300
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHV V D IV ++++VVKKKNK
Sbjct: 301 LTMSEKGFQQISFVNSIATSKGGRHVHYVADQIVTKLVDVVKKKNK-------------- 346
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 347 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQP 385
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGSTC +PKL+DAN
Sbjct: 386 KSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDAN 445
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG +NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 446 DAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENA 505
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 506 EINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 565
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
R FLEEFITPI+K +K ++E++FYSLPEFEEWK T N +K+KYYK
Sbjct: 566 RHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYK 614
Score = 153 bits (387), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + REIV+NI+R++ GE+PLPM P YKN
Sbjct: 835 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEEPLPMLPSYKN 894
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V++GE+AIL+ +EI+EL V WT YK+ L+ +L+G EK
Sbjct: 895 FKGTIEELAPNQYVISGEVAILNSTTIEISELPVRTWTQTYKEQVLEPMLNGTEK 949
Score = 57.8 bits (138), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL + R++K EL+ LK+K+P+DLW +DL E
Sbjct: 1125 FNYLLDMPLWYLTKEKKDELCRLRNEKEQELDTLKRKSPSDLWKEDLATFIE 1176
>gi|332816287|ref|XP_516332.3| PREDICTED: DNA topoisomerase 2-beta [Pan troglodytes]
Length = 1621
Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/655 (58%), Positives = 464/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 37 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVG-MNCREVTFVP 95
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 96 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 155
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 156 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 190
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD
Sbjct: 191 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKD 250
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S + VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 251 IVALMTRRAYDLAGSCRGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 310
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 311 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 362
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 363 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 395
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 396 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 455
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 456 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 515
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 516 QIMENAEINNIIKIVGLQYKKSYDDAKSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 575
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 576 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 630
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 851 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 910
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 911 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 965
Score = 68.6 bits (166), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 7/89 (7%)
Query: 824 ERQERQAAEGE----DDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKM 879
E QE+ A E E D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K
Sbjct: 1108 EAQEKAAEEDETQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKG 1165
Query: 880 TELNILKKKAPTDLWSDDLDALREK-DKI 907
E+N LK+K+P+DLW +DL A E+ DK+
Sbjct: 1166 REVNDLKRKSPSDLWKEDLAAFVEELDKV 1194
>gi|297701283|ref|XP_002827646.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha [Pongo
abelii]
Length = 1532
Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/650 (59%), Positives = 465/650 (71%), Gaps = 108/650 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 27 RLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIF 85
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 86 DEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIF--- 142
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 143 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ EYKK FKQ W DNM + E+K + +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE G+ +K+I+E VN RWEV
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVC 300
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 301 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNK-------------- 346
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 347 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQP 385
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGSTC +PKL+DAN
Sbjct: 386 KSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDAN 445
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG++NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 446 DAGSRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENA 505
Query: 523 EINNLVKIL-GLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTL 581
EINN++KI+ GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+L
Sbjct: 506 EINNIIKIIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSL 565
Query: 582 LRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
LR FLEEFITPI+K +K ++E++FYSLPEFEEWK T N +K+KYYK
Sbjct: 566 LRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYK 615
Score = 152 bits (385), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + REIV+NI+R++ GE+PLPM P YKN
Sbjct: 836 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEEPLPMLPSYKN 895
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V++GE+AIL+ +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 896 FKGTIEELAPNQYVISGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 950
Score = 55.5 bits (132), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 35/46 (76%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDD 897
++YLL M W LT E+K+EL + R++K EL+ LK+K+P+DLW +D
Sbjct: 1126 FNYLLDMPLWYLTKEKKDELCRLRNEKEQELDTLKRKSPSDLWKED 1171
>gi|328550504|ref|NP_001127186.1| DNA topoisomerase 2-beta [Pongo abelii]
gi|55725810|emb|CAH89685.1| hypothetical protein [Pongo abelii]
Length = 1620
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/655 (58%), Positives = 463/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 37 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVG-MNCREVTFVP 95
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 96 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 155
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 156 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 190
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD
Sbjct: 191 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKD 250
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S + VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 251 IVALMTRRAYDLAGSCRGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 310
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 311 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 362
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 363 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 395
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 396 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 455
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 456 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 515
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+G QY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 516 QIMENAEINNIIKIVGQQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 575
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 576 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 630
Score = 150 bits (379), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 99/144 (68%), Gaps = 5/144 (3%)
Query: 634 YVTGVLLFKMNLHKVTSDSISMFI----GRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIP 689
Y+ +L L D++ F+ R+EPEWYIPIIPMVL+NGAEGIGTGW K+P
Sbjct: 821 YIFTMLSSLARLFPAVDDNLLKFLYDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLP 880
Query: 690 NHNPREIVDNIKRMIRGEDPLPMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITE 749
N++ REIV+N++RM+ G DP PM P YKNFKG I G +++ V+GEI ++D + +EITE
Sbjct: 881 NYDAREIVNNVRRMLDGLDPHPMLPNYKNFKGTIQELGQNQYAVSGEIFVVDRNTVEITE 940
Query: 750 LQVGKWTTDYKD-TLDTLLHGAEK 772
L V WT YK+ L+ +L+G +K
Sbjct: 941 LPVRTWTQVYKEQVLEPMLNGTDK 964
Score = 67.4 bits (163), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 57/89 (64%), Gaps = 7/89 (7%)
Query: 824 ERQERQAAEGE----DDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKM 879
E QE+ A E E D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K
Sbjct: 1107 EAQEKAAEEDETQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKG 1164
Query: 880 TELNILKKKAPTDLWSDDLDALREK-DKI 907
++N LK+K+P+DLW +DL A E+ DK+
Sbjct: 1165 RDVNDLKRKSPSDLWKEDLAAFVEELDKV 1193
>gi|291045133|ref|NP_001094328.1| topoisomerase II beta [Rattus norvegicus]
gi|109945583|dbj|BAE96971.1| DNA topoisomerase IIbeta [Rattus norvegicus]
Length = 1614
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/655 (58%), Positives = 462/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 30 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVP 88
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 89 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 148
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 149 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 183
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL KFKM LDKD
Sbjct: 184 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLAKFKMEKLDKD 243
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 244 IVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 303
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 304 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 355
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 356 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 388
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 389 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 448
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LN REA+HK
Sbjct: 449 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNAREASHK 508
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 509 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 568
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EW++ N +KIKYYK
Sbjct: 569 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWEKHIENQKAWKIKYYK 623
Score = 150 bits (379), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 844 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLEGLDPHPMLPNYKN 903
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 904 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 958
Score = 65.5 bits (158), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK-DKI 907
D++Y+L M+ WSLT E+ EL+K+RD K E+N LK+K+P+DLW +DL A E+ DK+
Sbjct: 1130 DFNYILNMSLWSLTKEKVEELIKQRDTKGREVNDLKRKSPSDLWKEDLAAFVEELDKV 1187
>gi|431919412|gb|ELK17931.1| DNA topoisomerase 2-beta [Pteropus alecto]
Length = 1606
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/651 (58%), Positives = 462/651 (70%), Gaps = 107/651 (16%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYK 86
+ K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M R+IT+VPGLYK
Sbjct: 29 SKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCRDITFVPGLYK 87
Query: 87 IFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFG 146
IFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP +IF
Sbjct: 88 IFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIF- 146
Query: 147 HLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFV 206
G LLTSSNY+DEE KVTGGRNGYGAKLCNIFS+KF
Sbjct: 147 ------------------------GQLLTSSNYDDEEKKVTGGRNGYGAKLCNIFSTKFT 182
Query: 207 VETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDL 266
VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD+V L
Sbjct: 183 VETACKEYKHSFKQTWMNNMMKTSESKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVAL 242
Query: 267 ITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWE 325
+TRR YD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N RW+
Sbjct: 243 MTRRVYDLAGSCKGVKVIFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELANERWD 302
Query: 326 VAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 303 VCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK------------ 350
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTL 445
G+++KPFQVKNHIW+FINCLI NPTFDSQTKENMTL
Sbjct: 351 -----------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTL 387
Query: 446 QKGSFGSTC---------------------------------------------VPKLED 460
Q +FGS C +PKL+D
Sbjct: 388 QPKNFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIPKLDD 447
Query: 461 ANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILE 520
ANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HKQI+E
Sbjct: 448 ANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIME 507
Query: 521 NAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPT 580
NAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+
Sbjct: 508 NAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPS 567
Query: 581 LLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 568 LLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 618
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 839 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 898
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 899 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 953
Score = 67.4 bits (163), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Query: 822 QLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTE 881
Q + E + + + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E
Sbjct: 1098 QEKATEEEETQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKGRE 1155
Query: 882 LNILKKKAPTDLWSDDLDALREK-DKI 907
+N LK+K+P+DLW +DL A E+ DK+
Sbjct: 1156 VNDLKRKSPSDLWKEDLAAFAEELDKV 1182
>gi|383409263|gb|AFH27845.1| DNA topoisomerase 2-alpha [Macaca mulatta]
Length = 1531
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/639 (60%), Positives = 458/639 (71%), Gaps = 107/639 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 27 RLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIF 85
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 86 DEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIF--- 142
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 143 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ EYKK FKQ W DNM + E+K S +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELKPFSGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE G+P+K+I+E VN RWEV
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETGNPLKVIHEQVNHRWEVC 300
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 301 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNK-------------- 346
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 347 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQP 385
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGSTC +PKL+DAN
Sbjct: 386 KSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDAN 445
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG +NS DCTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 446 DAGGRNSTDCTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKMLNVREASHKQIMENA 505
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 506 EINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 565
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN 621
R FLEEFITPI+K +K ++E++FYSLPEFEEWK T N
Sbjct: 566 RHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPN 604
Score = 152 bits (384), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 835 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLMDGEEPLPMLPSYKN 894
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V++GE+AIL+ +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 895 FKGTIEELAPNQYVISGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 949
Score = 57.8 bits (138), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL + R++K EL+ LK+K+P+DLW +DL E
Sbjct: 1125 FNYLLDMPLWYLTKEKKDELCRLRNEKEQELDTLKRKSPSDLWKEDLATFIE 1176
>gi|339241631|ref|XP_003376741.1| DNA topoisomerase 2-alpha [Trichinella spiralis]
gi|316974528|gb|EFV58014.1| DNA topoisomerase 2-alpha [Trichinella spiralis]
Length = 1357
Score = 780 bits (2014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/647 (59%), Positives = 447/647 (69%), Gaps = 105/647 (16%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E IYQKKSQLEHIL+RPDTYIGS+EP TE MW+ + E M RE+TYVPGLYKI+DE
Sbjct: 48 TIESIYQKKSQLEHILIRPDTYIGSIEPHTENMWVFDEEQQKMVIRELTYVPGLYKIYDE 107
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
I+VNA DNKQRDP MNCIKI++N N I VWNNGKGIPVVEHK+EKM+VP MIF
Sbjct: 108 IVVNAADNKQRDPSMNCIKISINATKNEIMVWNNGKGIPVVEHKEEKMYVPEMIF----- 162
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
G LLTSSNY+D E KVTGGRNGYGAKLCNIFS +FVVETS
Sbjct: 163 --------------------GTLLTSSNYDDTERKVTGGRNGYGAKLCNIFSKRFVVETS 202
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
C EYKK FKQVW NM+ P I DFT + F PDL KF M LD D+V L+ RR
Sbjct: 203 CREYKKHFKQVWTKNMTATEKPVISDCVDQDFTCVRFIPDLDKFGMEKLDDDIVALMCRR 262
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIA 329
AYD A STK VKVFLNG+++PV F++YV LY DR + G+P+K++YE +PRWEVA+A
Sbjct: 263 AYDIAGSTKGVKVFLNGKRIPVLGFKEYVDLYLKDRTTDTGEPLKVVYEQPHPRWEVAVA 322
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SDRGFQQVSF NSIATTKGGRHVD V D IV+++IE VKK+ K
Sbjct: 323 VSDRGFQQVSFTNSIATTKGGRHVDYVCDGIVEKVIENVKKQTK---------------- 366
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
KT GM ++PFQVKNH+W+FINCLI NPTFDSQTKENMTLQ S
Sbjct: 367 ---------KT---------GMNVRPFQVKNHLWLFINCLIENPTFDSQTKENMTLQPKS 408
Query: 450 FGSTC---------------------------------------------VPKLEDANDA 464
FGS C VPKLEDAN+A
Sbjct: 409 FGSKCTLSDKFFSQVLKCGVLESVLSWLQYKAQAQLDKKCHSTKHSKLKGVPKLEDANEA 468
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
GTKNS CTLILTEGDSAKSLAV+G VVGRD YGVFPL+GK+LNVREA +KQI+ENAEI
Sbjct: 469 GTKNSHRCTLILTEGDSAKSLAVAGFSVVGRDFYGVFPLKGKVLNVREANYKQIMENAEI 528
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
NNL+KI+GLQY KY T E M +LRYGR+MIM DQDQDGSHIKGL+INF HHNWP LLR
Sbjct: 529 NNLIKIIGLQYKCKYDTSEQMNSLRYGRVMIMADQDQDGSHIKGLVINFFHHNWPNLLRR 588
Query: 585 PFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
F+EEFITPI+KATK REEL F+S+P++ +W+ ET NW +K+KYYK
Sbjct: 589 NFIEEFITPIVKATKGREELQFFSIPQYFQWRAETANWKAWKVKYYK 635
Score = 156 bits (395), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/114 (60%), Positives = 89/114 (78%), Gaps = 1/114 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP WY PI+P+VLVNG EGIGTGW TK+PNH+PR +V N+KR++ E+ LPM PWYKN
Sbjct: 856 KIEPFWYCPILPLVLVNGCEGIGTGWSTKVPNHDPRIVVKNLKRLMNDEELLPMYPWYKN 915
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAE 771
F+GEI SRFV GEIA +DD LEITEL +G WT +YK++ L+ +L+GA+
Sbjct: 916 FQGEISTLNASRFVCFGEIASVDDTTLEITELPIGTWTQNYKESVLEPMLYGAD 969
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 103/240 (42%), Gaps = 28/240 (11%)
Query: 794 KIDDDSEEEEIEEVFHDNELAKPQKTGPQLERQERQAAE----GEDDEAG----SQTQEE 845
KI++ ++ +E++ A P K + E + A E DEA + EE
Sbjct: 1085 KIENMKKKHIVEQLVERGYPADPVKKWKEAENMRKLKAMEEFVDETDEANEVEETGANEE 1144
Query: 846 EDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDA----- 900
+ DYDYLL M L+ E K++LLK RD K+ ELN LK K P LW +DLD
Sbjct: 1145 DVCLSDYDYLLSMALIRLSEEEKDKLLKDRDVKIDELNSLKAKTPKMLWIEDLDKFLDVL 1204
Query: 901 ----LREKDKIHPCPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAPPPTKAS 956
L EK++ G T G K +R + R S M S G PP +
Sbjct: 1205 DKHELSEKEEAASAVKGIVTSGKGNKASSR---NARKKVSTITAMPESEGIRIPPQITSD 1261
Query: 957 PVKKKKPA---AKRPAPKSDSSDLSDSDGDSDFASRKK----KTAAAKKAKPAKKESEYS 1009
+K + A +R +++ D + A RK+ +T A K AKK SE S
Sbjct: 1262 LREKAEKADQVKQRMINLREAAKAGDEEAIKKLAKRKRITGPRTVAGAKV-VAKKTSETS 1320
>gi|449273806|gb|EMC83192.1| DNA topoisomerase 2-beta, partial [Columba livia]
Length = 1611
Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/669 (58%), Positives = 468/669 (69%), Gaps = 118/669 (17%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
S K + KMSVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T
Sbjct: 17 SINKNDTSKKMSVERVYQKKTQLEHILLRPDTYIGSVEPLTQVMWVYDEDVG-MNCREVT 75
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
+VPGLYKIFDEILVNA DNKQRD M CIKI+++ E+N IS+WNNGKGIPVVEHK EK++
Sbjct: 76 FVPGLYKIFDEILVNAADNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEHKVEKVY 135
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTG-GRNGYGAKLC 198
VP +IF G LLTSSNY+D+E KVTG GRNGYGAKLC
Sbjct: 136 VPALIF-------------------------GQLLTSSNYDDDEKKVTGSGRNGYGAKLC 170
Query: 199 NIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTS 258
NIFS+KF VET+C EYK SFKQ W +NM K + P+IK DD+T ITF PDL+KFKM
Sbjct: 171 NIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEPKIKHFDGDDYTCITFQPDLSKFKMEK 230
Query: 259 LDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIY 317
LDKD+V L+TRRAYD A S K VKV LNG+KLPV F+ YV LY D+ DE G +K+I+
Sbjct: 231 LDKDIVALMTRRAYDLAGSCKGVKVMLNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIH 290
Query: 318 ENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGC 377
E VN RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 291 EVVNERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK---- 346
Query: 378 TIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPF----------QVKNHIWIFIN 427
G+++KPF QVKNHIW+F+N
Sbjct: 347 -------------------------------AGVSVKPFQAINWFLCFQQVKNHIWVFVN 375
Query: 428 CLIVNPTFDSQTKENMTLQKGSFGSTC--------------------------------- 454
CLI NP+FDSQTKENMTLQ SFGS C
Sbjct: 376 CLIENPSFDSQTKENMTLQPKSFGSKCQLSEKFFKAASNCGIIESILNWVKFKAQTQLNK 435
Query: 455 ------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFP 502
+PKL+DANDAG K+S+DCTLILTEGDSAKSLAVSGLGV+GRD+YGVFP
Sbjct: 436 KCSSVKHSKIKGIPKLDDANDAGGKHSLDCTLILTEGDSAKSLAVSGLGVIGRDRYGVFP 495
Query: 503 LRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQD 562
LRGK+LNVREA+HKQI+ENAEINN++KI+GLQY K Y E +K+LRYG++MIMTDQDQD
Sbjct: 496 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYEDPESLKSLRYGKIMIMTDQDQD 555
Query: 563 GSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNW 622
GSHIKGL+INFIHHNWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N
Sbjct: 556 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHMENH 615
Query: 623 HTYKIKYYK 631
+KIKYYK
Sbjct: 616 KAWKIKYYK 624
Score = 153 bits (386), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/115 (60%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVLVNGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 845 RVEPEWYIPIIPMVLVNGAEGIGTGWACKLPNYDTREIVNNVRRMLDGLDPHPMLPNYKN 904
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++VV+GEI ++D + +EITEL V WT YK+ L+ +L+G EK
Sbjct: 905 FKGTIQELGQNQYVVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTEK 959
Score = 62.0 bits (149), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
D++Y+L M+ WSLT E+ EL+K+RD K +LN LK+K+ +DLW +DL A E
Sbjct: 1131 DFNYILNMSLWSLTKEKVEELIKQRDSKERDLNDLKRKSSSDLWKEDLAAFVE 1183
>gi|341880169|gb|EGT36104.1| hypothetical protein CAEBREN_03194 [Caenorhabditis brenneri]
Length = 1547
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/656 (58%), Positives = 459/656 (69%), Gaps = 105/656 (16%)
Query: 22 KKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITET-MWLMNRETNHMERREITY 80
KK + KM++E IYQKKSQLEHILLRPDTYIGSVE T MW+ N E + +E+REI Y
Sbjct: 53 KKGGGSKKMAIEDIYQKKSQLEHILLRPDTYIGSVEYTERTPMWVYNTEKSQLEQREIKY 112
Query: 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
VPGLYKIFDEILVNA DNKQRD KMN IK+T+++E N ISV+NNGKGIPV +HK EK++V
Sbjct: 113 VPGLYKIFDEILVNAADNKQRDSKMNTIKVTIDKERNLISVYNNGKGIPVTQHKVEKVYV 172
Query: 141 PTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNI 200
P +IF G LLTSSNYND+E KVTGGRNGYGAKLCNI
Sbjct: 173 PELIF-------------------------GTLLTSSNYNDDEKKVTGGRNGYGAKLCNI 207
Query: 201 FSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLD 260
FS+KFV+ETS E+ + FKQ W +NM++ PEIK + +DFTKITF+PDLTKFKM LD
Sbjct: 208 FSTKFVLETSSKEFGQQFKQTWINNMTRDKDPEIKKNTGEDFTKITFSPDLTKFKMDELD 267
Query: 261 KDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENV 320
D+ L+ RRAYD A STK V VFLNGE++PVK F+DYVK+YT + DG+P+K+ YE V
Sbjct: 268 DDICHLMARRAYDVAGSTKGVTVFLNGERIPVKGFEDYVKMYTSQFTNDGEPIKVAYEQV 327
Query: 321 NPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTII 380
RW+VA+A S++GFQQVSFVNSIATTKGGRHVD V D +V + I+ +K+K
Sbjct: 328 GDRWQVALALSEKGFQQVSFVNSIATTKGGRHVDYVADQMVTKFIDSIKRK--------- 378
Query: 381 MLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTK 440
++KT M +KPFQ+KNH+W+F+N LI NPTFDSQTK
Sbjct: 379 ----------------LSKT---------SMNIKPFQIKNHMWVFVNALIENPTFDSQTK 413
Query: 441 ENMTLQKGSFGSTCV--------------------------------------------- 455
E MTLQ FGSTCV
Sbjct: 414 ETMTLQSKQFGSTCVLSEKFSKAASNVGITDAVMSWVRFKQMDDLNKKCSKTKTSKLKGI 473
Query: 456 PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATH 515
PKLEDANDAGTKNS CTLILTEGDSAK+LAV+GL VVGRDKYGVFPLRGKLLNVR+
Sbjct: 474 PKLEDANDAGTKNSQQCTLILTEGDSAKTLAVAGLAVVGRDKYGVFPLRGKLLNVRDGNM 533
Query: 516 KQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIH 575
KQI +NAEIN ++KILGLQY KKY T ED K+LRYG+LM+M DQDQDGSHIKGL+INF+H
Sbjct: 534 KQIADNAEINAMIKILGLQYKKKYETEEDFKSLRYGKLMVMADQDQDGSHIKGLVINFVH 593
Query: 576 HNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
H WP+L++ F+EEFITPI+KATK +EE+SF+S+PE+ EW+ T NW TYKIKYYK
Sbjct: 594 HFWPSLIQRNFVEEFITPIVKATKGKEEVSFFSIPEYAEWRMNTDNWKTYKIKYYK 649
Score = 158 bits (399), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 70/115 (60%), Positives = 87/115 (75%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPEWY P+IPMVLVNGA+GIGTGW T IPN+NPR+IV N+KR+I GE + PWYK
Sbjct: 870 RIEPEWYCPVIPMVLVNGAQGIGTGWSTNIPNYNPRDIVKNVKRLIAGEAQKALSPWYKG 929
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F+G I SRF GE+A+LDD+ +EITEL V +WT DYK+ L+TLL ++K
Sbjct: 930 FRGNIIQIDSSRFACYGEVAVLDDNTIEITELPVKQWTQDYKEKVLETLLESSDK 984
Score = 59.3 bits (142), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%)
Query: 831 AEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAP 890
++GE + S ++ E DYDYL+GM L+ E KN+L+K+ +DK+ E+ L+KK
Sbjct: 1155 SDGEGTSSSSASKAVETKLSDYDYLVGMALIKLSEEEKNKLIKESEDKLAEMKTLEKKTW 1214
Query: 891 TDLWSDDLDAL 901
DLW +DLD
Sbjct: 1215 QDLWHEDLDKF 1225
>gi|355725616|gb|AES08613.1| topoisomerase II beta 180kDa [Mustela putorius furo]
Length = 1482
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/661 (58%), Positives = 464/661 (70%), Gaps = 113/661 (17%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 14 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVP 72
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 73 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 132
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 133 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 167
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD
Sbjct: 168 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKD 227
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYEN-- 319
+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E
Sbjct: 228 IVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELXX 287
Query: 320 ----VNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDL 375
N RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 288 IHELANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-- 345
Query: 376 GCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTF 435
G+++KPFQVKNHIW+FINCLI NPTF
Sbjct: 346 ---------------------------------AGVSVKPFQVKNHIWVFINCLIENPTF 372
Query: 436 DSQTKENMTLQKGSFGSTC----------------------------------------- 454
DSQTKENMTLQ SFGS C
Sbjct: 373 DSQTKENMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYS 432
Query: 455 ----VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNV 510
+PKL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNV
Sbjct: 433 KIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNV 492
Query: 511 REATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLI 570
REA+HKQI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+
Sbjct: 493 REASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLL 552
Query: 571 INFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYY 630
INFIHHNWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYY
Sbjct: 553 INFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYY 612
Query: 631 K 631
K
Sbjct: 613 K 613
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 834 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 893
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 894 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 948
Score = 65.5 bits (158), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 57/92 (61%), Gaps = 3/92 (3%)
Query: 832 EGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPT 891
+ + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E+N LK+K+P+
Sbjct: 1103 QNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKRKSPS 1160
Query: 892 DLWSDDLDALREK-DKIHPCPGGNRTRGLALK 922
DLW +DL A E+ DK+ + G+A K
Sbjct: 1161 DLWKEDLAAFVEELDKVEAQEREDILAGMAGK 1192
>gi|1174742|sp|P41516.1|TOP2A_RAT RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
topoisomerase II, alpha isozyme
gi|587515|emb|CAA86496.1| DNA topoisomerase II [Rattus norvegicus]
Length = 1526
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/649 (59%), Positives = 462/649 (71%), Gaps = 108/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 26 RLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIF 84
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T+ N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 85 DEILVNAADNKQRDPKMSCIRVTM-MRNNLISIWNNGKGIPVVEHKVEKMYVPALIF--- 140
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 141 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 178
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ EYKK FKQ W DNM + E+K S +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 179 TASREYKKMFKQTWMDNMGRAGDMELKPFSGEDYTCITFQPDLSKFKMQSLDKDIVALMV 238
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG +LPVK F+ YV +Y D+ DE G+ +K+++E VNPRWEV
Sbjct: 239 RRAYDIAGSTKDVKVFLNGNRLPVKGFRSYVDMYLKDKVDETGNALKVVHEQVNPRWEVC 298
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 299 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVSKLVDVVKKKNK-------------- 344
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF N +I NPTFDSQTKENMTLQ
Sbjct: 345 ---------------------GGVAVKADQVKNHMWIFGNAVIENPTFDSQTKENMTLQA 383
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGSTC +PKL+DAN
Sbjct: 384 KSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQIQLNKKCSAVKHNRIKGIPKLDDAN 443
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG++NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 444 DAGSRNSAECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENA 503
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 504 EINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 563
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
R FLEEFITPI+K +K ++E++FYSLPEFEEWK N +K+KYYK
Sbjct: 564 RHRFLEEFITPIVKVSKNKQEIAFYSLPEFEEWKSTNPNHKKWKVKYYK 612
Score = 155 bits (391), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 833 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEEPLPMLPSYKN 892
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
+KG I+ +++V+NGE+AIL+ +EITEL + WT YK+ L+ +L+G EK
Sbjct: 893 YKGTIEELASNQYVINGEVAILNSTTIEITELPIRTWTQTYKEQVLEPMLNGTEK 947
Score = 65.9 bits (159), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 38/52 (73%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL K+RD+K ELN LKKK P+DLW +DL A E
Sbjct: 1122 FNYLLDMPLWYLTKEKKDELCKQRDEKEQELNTLKKKTPSDLWKEDLAAFVE 1173
>gi|38259192|ref|NP_071519.2| DNA topoisomerase 2-alpha [Rattus norvegicus]
gi|57964|emb|CAA79611.1| DNA topoisomerase II [Rattus norvegicus]
Length = 1526
Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/649 (59%), Positives = 462/649 (71%), Gaps = 108/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 26 RLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIF 84
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T+ N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 85 DEILVNAADNKQRDPKMSCIRVTM-MRNNLISIWNNGKGIPVVEHKVEKMYVPALIF--- 140
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 141 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 178
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ EYKK FKQ W DNM + E+K S +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 179 TASREYKKMFKQTWMDNMGRAGDMELKPFSGEDYTCITFQPDLSKFKMQSLDKDIVALMV 238
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG +LPVK F+ YV +Y D+ DE G+ +K+++E VNPRWEV
Sbjct: 239 RRAYDIAGSTKDVKVFLNGNRLPVKGFRSYVDMYLKDKVDETGNALKVVHEQVNPRWEVC 298
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 299 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVSKLVDVVKKKNK-------------- 344
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF N +I NPTFDSQTKENMTLQ
Sbjct: 345 ---------------------GGVAVKADQVKNHMWIFGNAVIENPTFDSQTKENMTLQA 383
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGSTC +PKL+DAN
Sbjct: 384 KSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQIQLNKKCSAVKHNRIKGIPKLDDAN 443
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG++NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 444 DAGSRNSAECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENA 503
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 504 EINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 563
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
R FLEEFITPI+K +K ++E++FYSLPEFEEWK N +K+KYYK
Sbjct: 564 RHRFLEEFITPIVKVSKNKQEIAFYSLPEFEEWKSTNPNHKKWKVKYYK 612
Score = 155 bits (391), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 833 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEEPLPMLPSYKN 892
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
+KG I+ +++V+NGE+AIL+ +EITEL + WT YK+ L+ +L+G EK
Sbjct: 893 YKGTIEELASNQYVINGEVAILNSTTIEITELPIRTWTQTYKEQVLEPMLNGTEK 947
Score = 65.9 bits (159), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 38/52 (73%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL K+RD+K ELN LKKK P+DLW +DL A E
Sbjct: 1122 FNYLLDMPLWYLTKEKKDELCKQRDEKEQELNTLKKKTPSDLWKEDLAAFVE 1173
>gi|348502160|ref|XP_003438637.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha-like
[Oreochromis niloticus]
Length = 1578
Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/661 (58%), Positives = 459/661 (69%), Gaps = 107/661 (16%)
Query: 17 NGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERR 76
N P K K ++SVE+IYQKK+QLEHILLRPD+YIGSVEP+T+ MW+ + + + R
Sbjct: 11 NKPVEKLKKDPKRLSVERIYQKKTQLEHILLRPDSYIGSVEPVTQQMWVFDEDAG-LNCR 69
Query: 77 EITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDE 136
++T+VPGLYKIFDEILVNA DNKQRD M+CIK+ ++ E NTISVWNNGKGIPVVEHK E
Sbjct: 70 DVTFVPGLYKIFDEILVNAADNKQRDKSMSCIKVNIDPENNTISVWNNGKGIPVVEHKVE 129
Query: 137 KMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAK 196
K++VP +IF G LLTSSNY+D+E KVTGGRNGYGAK
Sbjct: 130 KVYVPALIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAK 164
Query: 197 LCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKM 256
LCNIFS+KF VET+C + KK FKQ W DNM + IK +++T ITF PDL KFKM
Sbjct: 165 LCNIFSTKFTVETACKQSKKCFKQTWYDNMGRAGEASIKPFDGEEYTCITFRPDLAKFKM 224
Query: 257 TSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKI 315
+ LDKD V L+TRRAYD A +TK V+VF N +KLPV F+ YV +Y D+ DE G P+ +
Sbjct: 225 SILDKDTVALMTRRAYDIAGATKGVRVFFNSKKLPVTGFRSYVDMYVKDKVDELGGPLTV 284
Query: 316 IYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDL 375
I+E VN RWEV + S++GFQQVSFVNSIATTKGGRH+D V D +V ++IEVVKKKNK
Sbjct: 285 IHETVNERWEVCLTMSEKGFQQVSFVNSIATTKGGRHIDYVADQVVSKLIEVVKKKNK-- 342
Query: 376 GCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTF 435
G+ +KPFQVKNH+W+F+NCLI NPTF
Sbjct: 343 ---------------------------------AGVTVKPFQVKNHMWLFVNCLIENPTF 369
Query: 436 DSQTKENMTLQKGSFGSTC----------------------------------------- 454
DSQTKENMTLQ+ SFGS C
Sbjct: 370 DSQTKENMTLQQKSFGSKCPLSEKFIKQATSCGIVESIMNWVKFKAQTQLNKKCSAVKHT 429
Query: 455 ----VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNV 510
VPKL+DANDAG KNSI CTLILTEGDSAK+LAVSGLGVVGRD+YGVFPLRGK+LNV
Sbjct: 430 KIKGVPKLDDANDAGGKNSIGCTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLRGKMLNV 489
Query: 511 REATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLI 570
REA+HKQI+ENAEINN++KILGLQY K Y+ E +K+LRYG++MIMTDQDQDGSHIKGL+
Sbjct: 490 REASHKQIMENAEINNIIKILGLQYKKNYSDPESLKSLRYGKIMIMTDQDQDGSHIKGLL 549
Query: 571 INFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYY 630
INFIHHNWP+LL FLEEFITPIIKA+ + +LSFYS+PEF WKE N ++KIKYY
Sbjct: 550 INFIHHNWPSLLHHNFLEEFITPIIKASFKKTQLSFYSIPEFNAWKESQQNHKSWKIKYY 609
Query: 631 K 631
K
Sbjct: 610 K 610
Score = 149 bits (377), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIP VLVNGAEGIGTGW +KIPN++ REI+ NI RM+ GE+P+PM P YK+
Sbjct: 831 RVEPEWYIPIIPTVLVNGAEGIGTGWASKIPNYDIREIISNINRMLDGEEPMPMLPNYKD 890
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F+G I+ D++++ +GEI+ILD +EI+EL V WT YK+ L+ +L+G EK
Sbjct: 891 FRGTIEQVMDNQYLNSGEISILDSTTIEISELPVKTWTQTYKENVLEPMLNGTEK 945
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 38/53 (71%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
DY+YLL M W LT E+K EL K+RD KMTELN LKKK P DLW +DL A E
Sbjct: 1113 DYNYLLSMPMWFLTKEKKEELCKQRDAKMTELNTLKKKNPADLWREDLAAFSE 1165
>gi|17535065|ref|NP_496536.1| Protein TOP-2 [Caenorhabditis elegans]
gi|6175065|sp|Q23670.2|TOP2_CAEEL RecName: Full=Probable DNA topoisomerase 2; AltName: Full=DNA
topoisomerase II
gi|3878527|emb|CAA88867.1| Protein TOP-2 [Caenorhabditis elegans]
Length = 1520
Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/656 (58%), Positives = 461/656 (70%), Gaps = 105/656 (16%)
Query: 22 KKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITET-MWLMNRETNHMERREITY 80
KK + +M++E IYQKKSQLEHILLRPDTYIGSVE +T MW+ N E + +E+R+I+Y
Sbjct: 53 KKGGGSKQMAIEDIYQKKSQLEHILLRPDTYIGSVEHTEKTPMWVYNMEESKLEQRDISY 112
Query: 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
VPGLYKI+DEILVNA DNKQRDPKMN IKIT+N+E N ISV+NNGKGIPV +HK EK++V
Sbjct: 113 VPGLYKIYDEILVNAADNKQRDPKMNTIKITINKEKNEISVYNNGKGIPVTQHKVEKVYV 172
Query: 141 PTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNI 200
P +IF G LLTSSNYND+E KVTGGRNGYGAKLCNI
Sbjct: 173 PELIF-------------------------GTLLTSSNYNDDEKKVTGGRNGYGAKLCNI 207
Query: 201 FSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLD 260
FS+KF +ETS +YK +FKQ W NM++ P+I + +DFTKITF+PDL KFKM LD
Sbjct: 208 FSTKFTLETSSRDYKSAFKQTWIKNMTRDEEPKIVKSTDEDFTKITFSPDLAKFKMKELD 267
Query: 261 KDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENV 320
D+ L+ RRAYD A S+K V VFLNG+++P+K F+DYV++YT + + +G+P+KI YE V
Sbjct: 268 DDICHLMARRAYDVAGSSKGVAVFLNGKRIPIKGFEDYVQMYTSQFNNEGEPLKIAYEQV 327
Query: 321 NPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTII 380
RW+VA+A S++GFQQVSFVNSIATTKGGRHVD V D +V + I+ +K+K
Sbjct: 328 GDRWQVALALSEKGFQQVSFVNSIATTKGGRHVDYVADQMVAKFIDSIKRK--------- 378
Query: 381 MLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTK 440
+ KT M +KPFQ+KNH+W+F+NCLI NPTFDSQTK
Sbjct: 379 ----------------LTKT---------SMNIKPFQIKNHMWVFVNCLIENPTFDSQTK 413
Query: 441 ENMTLQKGSFGSTCV--------------------------------------------- 455
E MTLQ+ FGSTCV
Sbjct: 414 ETMTLQQKQFGSTCVLSEKFSKAASSVGITDAVMSWVRFKQMDDLNKKCSKTKTSKLKGI 473
Query: 456 PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATH 515
PKLEDANDAGTKNS CTLILTEGDSAK+LAVSGL VVGRDKYGVFPLRGKLLNVRE
Sbjct: 474 PKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDKYGVFPLRGKLLNVREGNM 533
Query: 516 KQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIH 575
KQI +NAE+N ++KILGLQY KKY T +D KTLRYG+LM+M DQDQDGSHIKGL+INFIH
Sbjct: 534 KQIADNAEVNAMIKILGLQYKKKYETEDDFKTLRYGKLMVMADQDQDGSHIKGLVINFIH 593
Query: 576 HNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
H WP+L++ F+EEFITPI+KATK +EE+SFYSLPE+ EW+ T NW +YKIKYYK
Sbjct: 594 HFWPSLIQRNFVEEFITPIVKATKGKEEVSFYSLPEYSEWRMNTDNWKSYKIKYYK 649
Score = 157 bits (398), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 70/115 (60%), Positives = 88/115 (76%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPEWY PIIPMVLVNGA+GIGTGW T IPN+NPRE+V NIKR+I GE + PWYKN
Sbjct: 870 RIEPEWYCPIIPMVLVNGAQGIGTGWSTNIPNYNPRELVKNIKRLIAGEPQKALAPWYKN 929
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F+G+I SRF GE+A+LDD+ +EITEL + +WT DYK+ L+ L+ ++K
Sbjct: 930 FRGKIIQIDPSRFACYGEVAVLDDNTIEITELPIKQWTQDYKEKVLEGLMESSDK 984
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 9/101 (8%)
Query: 800 EEEEIEEVFHDNELAKPQKTGPQLERQERQAAEGEDDEA-GSQTQEEEDPDKDYDYLLGM 858
EE++++E+ E+ +L+ + A E+DEA S + E DYDYL+GM
Sbjct: 1128 EEQKLKELRESGEI--------ELDEDDLAAVAVEEDEAISSAAKAVETKLSDYDYLVGM 1179
Query: 859 TFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
L+ E KN+L+K+ ++KM E+ +++KK DLW +DLD
Sbjct: 1180 ALIKLSEEEKNKLIKESEEKMAEVRVIEKKTWQDLWHEDLD 1220
>gi|268531746|ref|XP_002631000.1| Hypothetical protein CBG02746 [Caenorhabditis briggsae]
Length = 1506
Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/651 (58%), Positives = 456/651 (70%), Gaps = 105/651 (16%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITET-MWLMNRETNHMERREITYVPGLY 85
+ KM++E IYQKKSQLEHILLRPDTYIGSVE +T MW+ N E N +E+R+I YVPGLY
Sbjct: 56 SKKMAIEDIYQKKSQLEHILLRPDTYIGSVEYTEQTPMWVFNTEKNQLEQRDIRYVPGLY 115
Query: 86 KIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIF 145
KIFDEILVNA DNKQRDPKMN IK+ +++E N+ISV+NNGKGIPV HK EK++VP +IF
Sbjct: 116 KIFDEILVNAADNKQRDPKMNTIKVVIDKERNSISVYNNGKGIPVTLHKVEKVYVPELIF 175
Query: 146 GHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF 205
G LLTSSNYND+E KVTGGRNGYGAKLCNIFS+KF
Sbjct: 176 -------------------------GTLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTKF 210
Query: 206 VVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVD 265
+ETS EY K F Q W NM+K P+++ + +DFTKITF+PDL+KFKM LD D+
Sbjct: 211 KLETSSKEYHKKFSQTWVKNMTKEADPDVEKSTGEDFTKITFSPDLSKFKMKELDDDICH 270
Query: 266 LITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWE 325
L+ RRAYD A STK V VFLNGE++PVK F+DYVK+YT++ +G+P+KI YE V RW+
Sbjct: 271 LMARRAYDVAGSTKGVTVFLNGERIPVKGFEDYVKMYTNQFQNEGEPLKIAYEQVGDRWQ 330
Query: 326 VAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
VA+A S++GFQQVSFVNSIATTKGGRHVD V D +V + I+ +K+K
Sbjct: 331 VALALSEKGFQQVSFVNSIATTKGGRHVDYVADQMVAKFIDSIKRK-------------- 376
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTL 445
+ KT M +KPFQ+KNH+W+F+N LI NPTFDSQTKE MTL
Sbjct: 377 -----------LTKT---------AMNIKPFQIKNHMWVFVNALIENPTFDSQTKETMTL 416
Query: 446 QKGSFGSTC---------------------------------------------VPKLED 460
Q SFGSTC +PKLED
Sbjct: 417 QSKSFGSTCTLSEKFSKAAGNVGITDAVMTWVRFKQMDDLNKKCSKTKTSKLKGIPKLED 476
Query: 461 ANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILE 520
ANDAGTKNS CTLILTEGDSAK+LAVSGL +VGRDKYGVFPLRGKLLNVR+ KQI +
Sbjct: 477 ANDAGTKNSQQCTLILTEGDSAKTLAVSGLSIVGRDKYGVFPLRGKLLNVRDGNMKQIAD 536
Query: 521 NAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPT 580
NAEIN ++KILGLQY KKY T +D KTLRYG++M+M DQDQDGSHIKGL+INF+HH WP+
Sbjct: 537 NAEINAMIKILGLQYKKKYETDDDFKTLRYGKVMVMADQDQDGSHIKGLVINFVHHFWPS 596
Query: 581 LLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
L++ F+EEFITPI+KATK +EE+SF+S+PE+ EW+ T NW TYKIKYYK
Sbjct: 597 LIQRNFVEEFITPIVKATKGKEEISFFSIPEYSEWRMNTENWKTYKIKYYK 647
Score = 151 bits (381), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 86/115 (74%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPEWY PIIPMVLVNGA GIGTGW T IPN+NPRE+V N+K++I GE + PWYKN
Sbjct: 868 RIEPEWYCPIIPMVLVNGAAGIGTGWSTNIPNYNPRELVKNVKKLIAGEAQKALDPWYKN 927
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F+G+I SR+ GE+A+LDD+ +EITEL + WT +YK+ L++L+ +K
Sbjct: 928 FRGKIIQIDPSRYACYGEVAVLDDNTVEITELPIKTWTQEYKEKVLESLMESTDK 982
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%)
Query: 824 ERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELN 883
E Q + +GE A T+ E DYDYL+GM L+ E KN+L+K+ +DK+ E+
Sbjct: 1144 EDQVDEEGDGEGTSASFTTKVLETRLSDYDYLVGMALIKLSEEEKNKLIKESEDKLAEMK 1203
Query: 884 ILKKKAPTDLWSDDLD 899
L+KK DLW +DLD
Sbjct: 1204 ELEKKTWQDLWHEDLD 1219
>gi|114145437|ref|NP_001041456.1| transcription factor [Ciona intestinalis]
gi|93003262|tpd|FAA00214.1| TPA: transcription factor protein [Ciona intestinalis]
Length = 1538
Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/663 (58%), Positives = 464/663 (69%), Gaps = 107/663 (16%)
Query: 15 NGNGP-SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHM 73
NG+ P +P ++SVE+IYQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + E M
Sbjct: 3 NGDLPKTPPGGGGKKRLSVERIYQKKTQLEHILLRPDTYIGSVEPVTQAMWVYD-EGEGM 61
Query: 74 ERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEH 133
REIT+VPGLYKIFDEILVNA DNKQRDPKM+ IKIT+N E N ISVWN+GKGIPVVEH
Sbjct: 62 VNREITFVPGLYKIFDEILVNAADNKQRDPKMSTIKITINPEKNLISVWNDGKGIPVVEH 121
Query: 134 KDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGY 193
K EKM+VP MIF GHLLTSSNY+D++ KVTGGRNGY
Sbjct: 122 KGEKMYVPEMIF-------------------------GHLLTSSNYDDDDKKVTGGRNGY 156
Query: 194 GAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTK 253
GAKLCNIFS+KF VET+ + K F Q W NMSK +I S K DFT +TF PDL K
Sbjct: 157 GAKLCNIFSTKFKVETASKDEKMYFSQSWSKNMSKAHDKKIVSYEKPDFTCVTFHPDLEK 216
Query: 254 FKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR-QDEDGDP 312
F M SLDKD V L++RRAYD A ST VKVFLNG KLPVKNF+DYV+LY + +D++G+P
Sbjct: 217 FHMESLDKDTVALLSRRAYDIAGSTSGVKVFLNGSKLPVKNFKDYVQLYVAQMRDDNGEP 276
Query: 313 VKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKN 372
K+I+E VNPRWE+ + SD+GFQQVSFVNSIATTKGGRH D V+D + K++IEVVK+KN
Sbjct: 277 FKVIHEQVNPRWEICLTSSDKGFQQVSFVNSIATTKGGRHTDYVIDQVTKKLIEVVKRKN 336
Query: 373 KDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVN 432
K GG+ +KPFQ+KNH W+F+NCLI N
Sbjct: 337 K-----------------------------------GGVEVKPFQIKNHCWLFVNCLIEN 361
Query: 433 PTFDSQTKENMTLQKGSFGSTC-------------------------------------- 454
PTFDSQTKENMTLQ FGS C
Sbjct: 362 PTFDSQTKENMTLQAKKFGSKCNLTEKFLKMASSSGIVDNIMNWVKFKAQSQLQKKSAGK 421
Query: 455 ------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLL 508
VPKL+DANDAGT++S+DCTLILTEGDSAK+LAVSGL V+GRDKYGVFPLRGKLL
Sbjct: 422 SNKLKGVPKLDDANDAGTRHSLDCTLILTEGDSAKTLAVSGLSVIGRDKYGVFPLRGKLL 481
Query: 509 NVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKG 568
NVR+A+HKQI++N EIN+++KI+GL+Y+KKY T +D+K+LRYG+LMIMTDQD DGSHIKG
Sbjct: 482 NVRDASHKQIMDNIEINHIIKIMGLKYNKKYETDDDLKSLRYGKLMIMTDQDHDGSHIKG 541
Query: 569 LIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIK 628
L+INFIH NWP +L+ LEEFITPI+K TK + L FY++PEFE+W+ N ++K+K
Sbjct: 542 LLINFIHTNWPKMLQRRMLEEFITPIVKVTKGSQVLCFYTIPEFEDWQNTIENPKSWKVK 601
Query: 629 YYK 631
YYK
Sbjct: 602 YYK 604
Score = 147 bits (371), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 65/115 (56%), Positives = 88/115 (76%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
++EP WY PIIP VLVNG EGIGTGW T++PNH+ RE+V NIKR+I GE+P+PM P YKN
Sbjct: 827 KVEPSWYCPIIPTVLVNGTEGIGTGWSTRVPNHDIREVVKNIKRLINGEEPVPMLPSYKN 886
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
F+G I+ +R+VV+GE A++DD +EITEL + WT YK++ L+ L+ G +K
Sbjct: 887 FRGTIEEVEANRYVVSGEAALIDDQTVEITELPIKSWTQAYKESVLEPLVAGTDK 941
Score = 67.8 bits (164), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK-DKI 907
D++Y+L M WSL+ ERK+ELLK+RD K EL LKKK PT LW DDLD E+ DK+
Sbjct: 1110 DFNYILSMPLWSLSKERKDELLKQRDAKCGELEELKKKTPTRLWLDDLDKFMEELDKV 1167
>gi|402900108|ref|XP_003913022.1| PREDICTED: DNA topoisomerase 2-alpha isoform 2 [Papio anubis]
Length = 1526
Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/638 (59%), Positives = 452/638 (70%), Gaps = 110/638 (17%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 27 RLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIF 85
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 86 DEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIF--- 142
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 143 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ EYKK FKQ W DNM + E+K S +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELKPFSGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAI 328
RRAYD A STKDVKVFLNG KLPV F D D DE G+P+K+I+E VN RWEV +
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVSIFLD----VNDNLDETGNPLKVIHEQVNHRWEVCL 296
Query: 329 APSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 297 TMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNK--------------- 341
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 342 --------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPK 381
Query: 449 SFGSTC---------------------------------------------VPKLEDAND 463
SFGSTC +PKL+DAND
Sbjct: 382 SFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDAND 441
Query: 464 AGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAE 523
AG +NS DCTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENAE
Sbjct: 442 AGGRNSTDCTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKMLNVREASHKQIMENAE 501
Query: 524 INNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR 583
INN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LLR
Sbjct: 502 INNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLR 561
Query: 584 LPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN 621
FLEEFITPI+K +K ++E++FYSLPEFEEWK T N
Sbjct: 562 HRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPN 599
Score = 152 bits (384), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 830 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLMDGEEPLPMLPSYKN 889
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V++GE+AIL+ +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 890 FKGTIEELAPNQYVISGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 944
Score = 57.8 bits (138), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL + R++K EL+ LK+K+P+DLW +DL E
Sbjct: 1120 FNYLLDMPLWYLTKEKKDELCRLRNEKEQELDTLKRKSPSDLWKEDLATFIE 1171
>gi|317419224|emb|CBN81261.1| DNA topoisomerase 2-alpha, partial [Dicentrarchus labrax]
Length = 968
Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/661 (57%), Positives = 464/661 (70%), Gaps = 107/661 (16%)
Query: 17 NGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERR 76
N P K K ++SVE+IYQKK+QLEHILLRPD+YIGSVEP+T+ MW+ + + + R
Sbjct: 2 NKPLEKTKKDPKRLSVERIYQKKTQLEHILLRPDSYIGSVEPVTQQMWVYDEDVG-LNCR 60
Query: 77 EITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDE 136
++T+VPGLYKIFDEILVNA DNKQRD KM+CIKI+++ E NTISVWNNGKGIPVVEHK E
Sbjct: 61 DVTFVPGLYKIFDEILVNAADNKQRDNKMSCIKISIDVENNTISVWNNGKGIPVVEHKVE 120
Query: 137 KMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAK 196
K++VP +IF G LLTSSNY+D+E KVTGGRNGYGAK
Sbjct: 121 KVYVPALIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAK 155
Query: 197 LCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKM 256
LCNIFS+KF VET+C E KK FKQ W DNM + IKS + +++T ITF PDL KFKM
Sbjct: 156 LCNIFSTKFTVETACKESKKVFKQTWYDNMGRTGDSNIKSFNGEEYTCITFRPDLPKFKM 215
Query: 257 TSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKI 315
++LDKD V L+TRRAYD A +K V+V NG++LP+ F+ YV +Y D+ DE G+ + +
Sbjct: 216 STLDKDTVALMTRRAYDIAGVSKGVRVEFNGKRLPIAGFRSYVDMYLKDKVDEVGNSLTV 275
Query: 316 IYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDL 375
++E VN RWEV + S++GFQQVSFVNSIATTKGGRH+D V D +V ++IEVVKKKNK
Sbjct: 276 VHEIVNNRWEVCLTMSEKGFQQVSFVNSIATTKGGRHIDYVADQVVGKLIEVVKKKNK-- 333
Query: 376 GCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTF 435
G+A+KPFQVKNH+W+F+NCLI NPTF
Sbjct: 334 ---------------------------------AGVAVKPFQVKNHMWLFVNCLIENPTF 360
Query: 436 DSQTKENMTLQKGSFGSTC----------------------------------------- 454
DSQTKENMTLQ+ +FGSTC
Sbjct: 361 DSQTKENMTLQQKNFGSTCPLGDKFIKQATSCGIVESIMNWVKFKAQSQLNKKCSAVKHT 420
Query: 455 ----VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNV 510
VPKL+DANDAG KNSI CTLILTEGDSAK+LAVSGLGVVGRD+YGVFPLRGK+LNV
Sbjct: 421 KIKGVPKLDDANDAGGKNSISCTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLRGKMLNV 480
Query: 511 REATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLI 570
REA+ KQI+ENAEINN++KILGLQY K Y+ E +K+LRYG++MIMTDQDQDGSHIKGL+
Sbjct: 481 REASLKQIMENAEINNIIKILGLQYKKNYSDPESLKSLRYGKIMIMTDQDQDGSHIKGLL 540
Query: 571 INFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYY 630
INFIHHNWP+LLR FLEEFITPIIK + + +LSFYS+PEF WK+ N ++KIKYY
Sbjct: 541 INFIHHNWPSLLRHNFLEEFITPIIKVSHKKTQLSFYSIPEFNSWKDSQPNHKSWKIKYY 600
Query: 631 K 631
K
Sbjct: 601 K 601
Score = 151 bits (381), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWY+PIIP VLVNGAEGIGTGW +KIPN+N REIV NI RM+ G++PLPM P YK
Sbjct: 822 RVEPEWYMPIIPTVLVNGAEGIGTGWASKIPNYNIREIVSNIHRMLNGDEPLPMLPNYKG 881
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYK-DTLDTLLHGAEK 772
F+G I++ D++F+ +GE+AI+D +EI+EL V WT YK + L+ +L+G EK
Sbjct: 882 FRGTIEHVMDNQFMNSGEVAIIDSTTIEISELPVKSWTQTYKENVLEPMLNGTEK 936
>gi|170592146|ref|XP_001900830.1| Probable DNA topoisomerase II [Brugia malayi]
gi|158591697|gb|EDP30301.1| Probable DNA topoisomerase II, putative [Brugia malayi]
Length = 1570
Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/649 (58%), Positives = 451/649 (69%), Gaps = 106/649 (16%)
Query: 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITET-MWLMNRETNHMERREITYVPGLYKIF 88
+S+EKIYQKKSQLEHILLRPDTYIGSVE + +W+ + ET + +R+I+YVPGLYKIF
Sbjct: 75 LSIEKIYQKKSQLEHILLRPDTYIGSVERTDKAPLWVYDMETERIIQRDISYVPGLYKIF 134
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRD KMN IKI +N+ETN ISV+NNGKGIPVV HK E+++VP +IF
Sbjct: 135 DEILVNAADNKQRDSKMNLIKININKETNEISVFNNGKGIPVVLHKVEQLYVPELIF--- 191
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D E KVTGGRNGYGAKLCNIFS +F VE
Sbjct: 192 ----------------------GTLLTSSNYDDSERKVTGGRNGYGAKLCNIFSREFTVE 229
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
TS EY K+FKQ WK+NM+K P + S +DFT++TF PDL KF+MT LD D++ LI+
Sbjct: 230 TSSKEYGKAFKQTWKNNMTKDKDPFVSKSSGEDFTRVTFKPDLAKFRMTELDDDIISLIS 289
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQ-DEDGDPVKIIYENVNPRWEVA 327
RRAYD A STK VKV+LNG+ LPV+ F+ YV Y D DG+P K++YE VN RWEVA
Sbjct: 290 RRAYDVAGSTKGVKVYLNGKLLPVQGFKQYVDQYAKHNLDNDGEPYKVVYEQVNERWEVA 349
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQVSFVNSIATTKGGRHVD V D I ++I+ +KKK
Sbjct: 350 LTVSEKGFQQVSFVNSIATTKGGRHVDYVADQITAKLIDTIKKK---------------- 393
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
V G+ +KPFQ+K+H+WIF+N L+ NPTFDSQTKE MTLQ
Sbjct: 394 ------------------VGKSGVNVKPFQIKSHMWIFVNSLVENPTFDSQTKETMTLQA 435
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGS C +PKLEDAN
Sbjct: 436 KSFGSKCELSERFINAVMKCGIVEAVLAWVRFKQQETLDKKCSSKKTSKLKGIPKLEDAN 495
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAGTKNS CTLILTEGDSAKSLAVSGLGVVGRD+YGVFPLRGK+LNVRE +HKQI+ENA
Sbjct: 496 DAGTKNSSLCTLILTEGDSAKSLAVSGLGVVGRDRYGVFPLRGKMLNVREGSHKQIMENA 555
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EIN+L+KI+GLQY KY EDM+TLRYG++M+M DQDQDGSHIKGL+INFIH+NWP L+
Sbjct: 556 EINSLIKIIGLQYRLKYDKDEDMRTLRYGKIMVMADQDQDGSHIKGLVINFIHYNWPVLI 615
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
R F+EEFITPI+KATK +E LSF+SLPE+ EW+ T NW TY+IKYYK
Sbjct: 616 RRNFVEEFITPIVKATKGKESLSFFSLPEYAEWRNNTENWKTYRIKYYK 664
Score = 169 bits (427), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/115 (62%), Positives = 96/115 (83%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPEWY PIIP VLVNGAEGIGT W TKIPN+NPREIVDN++R+IRGE+P P+ PW+KN
Sbjct: 885 RIEPEWYCPIIPTVLVNGAEGIGTAWSTKIPNYNPREIVDNMRRLIRGEEPKPLIPWFKN 944
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
F+G I+ +SR++ +GEIA+L DD +EITEL + WT +YK++ L+++L G++K
Sbjct: 945 FRGTIEKLDESRYICSGEIALLGDDTIEITELPIRTWTQNYKESVLESMLEGSDK 999
Score = 46.6 bits (109), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
DYDYL+GM L+ E K++LL + K+ EL L+ K +DLW +DL+
Sbjct: 1187 DYDYLVGMAILKLSEEEKDKLLHDSELKLEELKALELKTWSDLWEEDLN 1235
>gi|393908751|gb|EJD75192.1| DNA topoisomerase 2 [Loa loa]
Length = 1569
Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/650 (58%), Positives = 450/650 (69%), Gaps = 106/650 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITET-MWLMNRETNHMERREITYVPGLYKI 87
++++EKIYQKKSQLEHILLRPDTYIGSVE + MW+ + E + +R+I+YVPGLYKI
Sbjct: 73 RLTIEKIYQKKSQLEHILLRPDTYIGSVEHTDKAPMWVYDAEVERIVQRDISYVPGLYKI 132
Query: 88 FDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGH 147
FDEILVNA DNKQRDPKMN I+I +N+ETN ISV+NNGKGIPVV HK E+++VP +IF
Sbjct: 133 FDEILVNAADNKQRDPKMNLIRININKETNEISVFNNGKGIPVVLHKVEQLYVPELIF-- 190
Query: 148 LLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVV 207
G LLTSSNY+D E KVTGGRNGYGAKLCNIFS +F V
Sbjct: 191 -----------------------GTLLTSSNYDDSERKVTGGRNGYGAKLCNIFSKEFTV 227
Query: 208 ETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLI 267
ETS EY K+FKQ WK+NM+K P + +DFT +TF PDLTKFKM LD D++ LI
Sbjct: 228 ETSSKEYGKAFKQTWKNNMTKDKDPFVSKSVGEDFTHVTFKPDLTKFKMIELDDDIISLI 287
Query: 268 TRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQ-DEDGDPVKIIYENVNPRWEV 326
+RRAYD A STK VKV+LNG+ LPV+ F+ YV+ YT D DG+P KI YE VN RWEV
Sbjct: 288 SRRAYDIAGSTKGVKVYLNGKLLPVQGFKQYVEQYTKHNLDNDGEPYKIAYEQVNERWEV 347
Query: 327 AIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNK 386
A+ S++GFQQVSFVNSIATTKGGRHVD VVD I ++I+ +KKK
Sbjct: 348 ALTVSEKGFQQVSFVNSIATTKGGRHVDYVVDQITAKLIDTIKKK--------------- 392
Query: 387 FNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ 446
V G+ +KPFQ+K+H+WIF+N L+ NPTFDSQTKE MTLQ
Sbjct: 393 -------------------VGKSGVNVKPFQIKSHMWIFVNSLVENPTFDSQTKETMTLQ 433
Query: 447 KGSFGSTC---------------------------------------------VPKLEDA 461
+FGS C +PKLEDA
Sbjct: 434 AKNFGSKCEMSERFINAVMKCGIVEAVLAWVRFKQQETLDKKCSTKKTSKLKGIPKLEDA 493
Query: 462 NDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILEN 521
NDAGTKNS CTLILTEGDSAKSLAVSGLGVVGRD+YGVFPLRGK+LNVRE +HKQI+EN
Sbjct: 494 NDAGTKNSSLCTLILTEGDSAKSLAVSGLGVVGRDRYGVFPLRGKMLNVREGSHKQIMEN 553
Query: 522 AEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTL 581
AEIN L+KI+GLQY KY EDMKTLRYG++M+M DQDQDGSHIKGL+INFIH+NWP L
Sbjct: 554 AEINALIKIIGLQYRLKYDKDEDMKTLRYGKIMVMADQDQDGSHIKGLVINFIHYNWPVL 613
Query: 582 LRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+R F+EEFITPI+KATK +E SF+SLPE+ EW+ T NW TY+IKYYK
Sbjct: 614 IRRNFVEEFITPIVKATKGKESFSFFSLPEYAEWRNNTENWKTYRIKYYK 663
Score = 169 bits (427), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/115 (63%), Positives = 94/115 (81%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPEWY PIIP VLVNGAEGIGT W TKIPN+NPREIVDN++R+IRGE+P + PW+KN
Sbjct: 884 RIEPEWYCPIIPTVLVNGAEGIGTAWSTKIPNYNPREIVDNMRRLIRGEEPKSLTPWFKN 943
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
F+G I+ DSR++ +GEIA+L DD +EITEL + WT +YK+T L+ +L G++K
Sbjct: 944 FRGTIEKLDDSRYICSGEIALLSDDTIEITELPIRTWTQNYKETVLEPMLEGSDK 998
Score = 49.7 bits (117), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
DYDYL+GM L+ E K++LL+ + K+ EL L+ K +DLW +DLD
Sbjct: 1186 DYDYLVGMAILKLSEEEKDKLLRDSELKLEELKSLESKTWSDLWKEDLD 1234
>gi|391343500|ref|XP_003746047.1| PREDICTED: DNA topoisomerase 2-beta [Metaseiulus occidentalis]
Length = 1489
Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/648 (58%), Positives = 454/648 (70%), Gaps = 109/648 (16%)
Query: 32 VEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEI 91
+EKIYQKK+QLEH+LLRPDTYIGSVEP+T+ MW+ + E M REITYVPGLYKIFDEI
Sbjct: 5 IEKIYQKKTQLEHVLLRPDTYIGSVEPLTQKMWVFDGEQEGMVMREITYVPGLYKIFDEI 64
Query: 92 LVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTS 151
LVNA DNK RD +CIKI ++ E N ISVWNNGKGIPVV H+ EK +VPT+I
Sbjct: 65 LVNAADNKHRDKNQDCIKIEIDPEKNMISVWNNGKGIPVVMHQKEKCYVPTLI------- 117
Query: 152 SNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSC 211
FGHLLTSSNYNDEE KVTGGRNGYGAKLCNIFS+KF VET+
Sbjct: 118 ------------------FGHLLTSSNYNDEEKKVTGGRNGYGAKLCNIFSTKFTVETAS 159
Query: 212 SEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRA 271
+ K++FKQ W DNM+ P+I S+D +TKITF PDL+KFKM +DKD + LI+RRA
Sbjct: 160 RDQKRAFKQSWSDNMTNTAEPKIVDSSQD-YTKITFYPDLSKFKMEKMDKDFIALISRRA 218
Query: 272 YDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR-QDEDGD-PVKIIYENVNPRWEVAIA 329
YD A T VKVFLNG +LP+K+F+DYV+++T + +ED D P+ +++E VN RWEVA
Sbjct: 219 YDVAGCTPGVKVFLNGTRLPIKSFKDYVQMFTSKCVNEDSDKPLVVVHEQVNERWEVACC 278
Query: 330 PSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
S G F+Q+SFVN+IATTKGG HV+ VVD++ K++ E VKKKNK
Sbjct: 279 LSPEGDFKQMSFVNNIATTKGGTHVEYVVDSLCKKLTEQVKKKNK--------------- 323
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
GV +G Q+++H+WIFINCLI NPTFDSQTKENMT Q
Sbjct: 324 ---------------AGVNIGKK-----QIRDHMWIFINCLIENPTFDSQTKENMTKQAK 363
Query: 449 SFGSTCV---------------------------------------------PKLEDAND 463
FGS CV PKLEDAND
Sbjct: 364 QFGSKCVVSEKFQNNVLKCGIVEAIMSWVQFKAQKEMNKKCSKSKVSKLKGIPKLEDAND 423
Query: 464 AGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAE 523
AGT SIDCTLILTEGDSAK+LAVSGLGV+GRDKYGVFPL+GK+LNVREATHKQI+ENAE
Sbjct: 424 AGTVRSIDCTLILTEGDSAKTLAVSGLGVIGRDKYGVFPLKGKILNVREATHKQIIENAE 483
Query: 524 INNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR 583
INN++KI+GLQY KKY T EDMKTLRYGR+MIMTDQDQDGSHIKGL+INFIHHNWP+LL+
Sbjct: 484 INNIIKIVGLQYKKKYETPEDMKTLRYGRIMIMTDQDQDGSHIKGLLINFIHHNWPSLLK 543
Query: 584 LPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+ FLEEFITPI+KA K +E SF+SLPEFEEWK T +W+ ++IKYYK
Sbjct: 544 MNFLEEFITPIVKAIKGNQEFSFFSLPEFEEWKAATPDWNKFRIKYYK 591
Score = 150 bits (379), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 71/117 (60%), Positives = 91/117 (77%), Gaps = 3/117 (2%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP++Y+PIIPMVLVNGAEGIGTGW TK+ N+NPRE+V NIKR++ E M PWYKN
Sbjct: 812 KIEPDFYLPIIPMVLVNGAEGIGTGWSTKVQNYNPREVVANIKRLLNDEPLKKMHPWYKN 871
Query: 719 FKGEIDYCGD--SRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F+GEI + +R+VV GE++IL + KLEITEL V WT YK+ L+TLLHG++K
Sbjct: 872 FRGEIHVLDEERTRYVVYGEVSILGNKKLEITELPVKTWTQQYKENVLETLLHGSDK 928
Score = 85.5 bits (210), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 55/78 (70%), Gaps = 2/78 (2%)
Query: 826 QERQAAEG-EDDEAGSQTQEEEDPD-KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELN 883
QE++A G ED+E+ + + ED KDY YLLGMT W+LT E+K ELLKKRD K+ EL+
Sbjct: 1077 QEKEAEAGLEDEESENSAEAREDAQTKDYGYLLGMTMWNLTYEKKEELLKKRDLKLAELD 1136
Query: 884 ILKKKAPTDLWSDDLDAL 901
+KKK P DLW DLDA
Sbjct: 1137 AIKKKTPKDLWRTDLDAF 1154
>gi|312069494|ref|XP_003137708.1| TOPoisomerase family member [Loa loa]
Length = 1485
Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/650 (58%), Positives = 450/650 (69%), Gaps = 106/650 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITET-MWLMNRETNHMERREITYVPGLYKI 87
++++EKIYQKKSQLEHILLRPDTYIGSVE + MW+ + E + +R+I+YVPGLYKI
Sbjct: 73 RLTIEKIYQKKSQLEHILLRPDTYIGSVEHTDKAPMWVYDAEVERIVQRDISYVPGLYKI 132
Query: 88 FDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGH 147
FDEILVNA DNKQRDPKMN I+I +N+ETN ISV+NNGKGIPVV HK E+++VP +IF
Sbjct: 133 FDEILVNAADNKQRDPKMNLIRININKETNEISVFNNGKGIPVVLHKVEQLYVPELIF-- 190
Query: 148 LLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVV 207
G LLTSSNY+D E KVTGGRNGYGAKLCNIFS +F V
Sbjct: 191 -----------------------GTLLTSSNYDDSERKVTGGRNGYGAKLCNIFSKEFTV 227
Query: 208 ETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLI 267
ETS EY K+FKQ WK+NM+K P + +DFT +TF PDLTKFKM LD D++ LI
Sbjct: 228 ETSSKEYGKAFKQTWKNNMTKDKDPFVSKSVGEDFTHVTFKPDLTKFKMIELDDDIISLI 287
Query: 268 TRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQ-DEDGDPVKIIYENVNPRWEV 326
+RRAYD A STK VKV+LNG+ LPV+ F+ YV+ YT D DG+P KI YE VN RWEV
Sbjct: 288 SRRAYDIAGSTKGVKVYLNGKLLPVQGFKQYVEQYTKHNLDNDGEPYKIAYEQVNERWEV 347
Query: 327 AIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNK 386
A+ S++GFQQVSFVNSIATTKGGRHVD VVD I ++I+ +KKK
Sbjct: 348 ALTVSEKGFQQVSFVNSIATTKGGRHVDYVVDQITAKLIDTIKKK--------------- 392
Query: 387 FNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ 446
V G+ +KPFQ+K+H+WIF+N L+ NPTFDSQTKE MTLQ
Sbjct: 393 -------------------VGKSGVNVKPFQIKSHMWIFVNSLVENPTFDSQTKETMTLQ 433
Query: 447 KGSFGSTC---------------------------------------------VPKLEDA 461
+FGS C +PKLEDA
Sbjct: 434 AKNFGSKCEMSERFINAVMKCGIVEAVLAWVRFKQQETLDKKCSTKKTSKLKGIPKLEDA 493
Query: 462 NDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILEN 521
NDAGTKNS CTLILTEGDSAKSLAVSGLGVVGRD+YGVFPLRGK+LNVRE +HKQI+EN
Sbjct: 494 NDAGTKNSSLCTLILTEGDSAKSLAVSGLGVVGRDRYGVFPLRGKMLNVREGSHKQIMEN 553
Query: 522 AEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTL 581
AEIN L+KI+GLQY KY EDMKTLRYG++M+M DQDQDGSHIKGL+INFIH+NWP L
Sbjct: 554 AEINALIKIIGLQYRLKYDKDEDMKTLRYGKIMVMADQDQDGSHIKGLVINFIHYNWPVL 613
Query: 582 LRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+R F+EEFITPI+KATK +E SF+SLPE+ EW+ T NW TY+IKYYK
Sbjct: 614 IRRNFVEEFITPIVKATKGKESFSFFSLPEYAEWRNNTENWKTYRIKYYK 663
Score = 168 bits (426), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 73/115 (63%), Positives = 94/115 (81%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPEWY PIIP VLVNGAEGIGT W TKIPN+NPREIVDN++R+IRGE+P + PW+KN
Sbjct: 884 RIEPEWYCPIIPTVLVNGAEGIGTAWSTKIPNYNPREIVDNMRRLIRGEEPKSLTPWFKN 943
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
F+G I+ DSR++ +GEIA+L DD +EITEL + WT +YK+T L+ +L G++K
Sbjct: 944 FRGTIEKLDDSRYICSGEIALLSDDTIEITELPIRTWTQNYKETVLEPMLEGSDK 998
Score = 49.7 bits (117), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
DYDYL+GM L+ E K++LL+ + K+ EL L+ K +DLW +DLD
Sbjct: 1186 DYDYLVGMAILKLSEEEKDKLLRDSELKLEELKSLESKTWSDLWKEDLD 1234
>gi|402900106|ref|XP_003913021.1| PREDICTED: DNA topoisomerase 2-alpha isoform 1 [Papio anubis]
Length = 1540
Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/648 (58%), Positives = 455/648 (70%), Gaps = 116/648 (17%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 27 RLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIF 85
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 86 DEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIF--- 142
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 143 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ EYKK FKQ W DNM + E+K S +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELKPFSGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240
Query: 269 RRAYDAAASTKDVKVFLNGEKLPV---------KNFQDYVKLYTDRQ-DEDGDPVKIIYE 318
RRAYD A STKDVKVFLNG KLPV K F ++ ++ DE G+P+K+I+E
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVSIFLDVNDNKGFCNHCQMXXXXXLDETGNPLKVIHE 300
Query: 319 NVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCT 378
VN RWEV + S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 301 QVNHRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNK----- 355
Query: 379 IIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQ 438
GG+A+K QVKNH+WIF+N LI NPTFDSQ
Sbjct: 356 ------------------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQ 385
Query: 439 TKENMTLQKGSFGSTC-------------------------------------------- 454
TKENMTLQ SFGSTC
Sbjct: 386 TKENMTLQPKSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIK 445
Query: 455 -VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREA 513
+PKL+DANDAG +NS DCTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA
Sbjct: 446 GIPKLDDANDAGGRNSTDCTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKMLNVREA 505
Query: 514 THKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINF 573
+HKQI+ENAEINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INF
Sbjct: 506 SHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINF 565
Query: 574 IHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN 621
IHHNWP+LLR FLEEFITPI+K +K ++E++FYSLPEFEEWK T N
Sbjct: 566 IHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPN 613
Score = 152 bits (384), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 844 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLMDGEEPLPMLPSYKN 903
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V++GE+AIL+ +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 904 FKGTIEELAPNQYVISGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 958
Score = 57.8 bits (138), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL + R++K EL+ LK+K+P+DLW +DL E
Sbjct: 1134 FNYLLDMPLWYLTKEKKDELCRLRNEKEQELDTLKRKSPSDLWKEDLATFIE 1185
>gi|393908752|gb|EJD75193.1| DNA topoisomerase 2, variant [Loa loa]
Length = 1352
Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/650 (58%), Positives = 450/650 (69%), Gaps = 106/650 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITET-MWLMNRETNHMERREITYVPGLYKI 87
++++EKIYQKKSQLEHILLRPDTYIGSVE + MW+ + E + +R+I+YVPGLYKI
Sbjct: 73 RLTIEKIYQKKSQLEHILLRPDTYIGSVEHTDKAPMWVYDAEVERIVQRDISYVPGLYKI 132
Query: 88 FDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGH 147
FDEILVNA DNKQRDPKMN I+I +N+ETN ISV+NNGKGIPVV HK E+++VP +IF
Sbjct: 133 FDEILVNAADNKQRDPKMNLIRININKETNEISVFNNGKGIPVVLHKVEQLYVPELIF-- 190
Query: 148 LLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVV 207
G LLTSSNY+D E KVTGGRNGYGAKLCNIFS +F V
Sbjct: 191 -----------------------GTLLTSSNYDDSERKVTGGRNGYGAKLCNIFSKEFTV 227
Query: 208 ETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLI 267
ETS EY K+FKQ WK+NM+K P + +DFT +TF PDLTKFKM LD D++ LI
Sbjct: 228 ETSSKEYGKAFKQTWKNNMTKDKDPFVSKSVGEDFTHVTFKPDLTKFKMIELDDDIISLI 287
Query: 268 TRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQ-DEDGDPVKIIYENVNPRWEV 326
+RRAYD A STK VKV+LNG+ LPV+ F+ YV+ YT D DG+P KI YE VN RWEV
Sbjct: 288 SRRAYDIAGSTKGVKVYLNGKLLPVQGFKQYVEQYTKHNLDNDGEPYKIAYEQVNERWEV 347
Query: 327 AIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNK 386
A+ S++GFQQVSFVNSIATTKGGRHVD VVD I ++I+ +KKK
Sbjct: 348 ALTVSEKGFQQVSFVNSIATTKGGRHVDYVVDQITAKLIDTIKKK--------------- 392
Query: 387 FNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ 446
V G+ +KPFQ+K+H+WIF+N L+ NPTFDSQTKE MTLQ
Sbjct: 393 -------------------VGKSGVNVKPFQIKSHMWIFVNSLVENPTFDSQTKETMTLQ 433
Query: 447 KGSFGSTC---------------------------------------------VPKLEDA 461
+FGS C +PKLEDA
Sbjct: 434 AKNFGSKCEMSERFINAVMKCGIVEAVLAWVRFKQQETLDKKCSTKKTSKLKGIPKLEDA 493
Query: 462 NDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILEN 521
NDAGTKNS CTLILTEGDSAKSLAVSGLGVVGRD+YGVFPLRGK+LNVRE +HKQI+EN
Sbjct: 494 NDAGTKNSSLCTLILTEGDSAKSLAVSGLGVVGRDRYGVFPLRGKMLNVREGSHKQIMEN 553
Query: 522 AEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTL 581
AEIN L+KI+GLQY KY EDMKTLRYG++M+M DQDQDGSHIKGL+INFIH+NWP L
Sbjct: 554 AEINALIKIIGLQYRLKYDKDEDMKTLRYGKIMVMADQDQDGSHIKGLVINFIHYNWPVL 613
Query: 582 LRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+R F+EEFITPI+KATK +E SF+SLPE+ EW+ T NW TY+IKYYK
Sbjct: 614 IRRNFVEEFITPIVKATKGKESFSFFSLPEYAEWRNNTENWKTYRIKYYK 663
Score = 168 bits (425), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 73/115 (63%), Positives = 94/115 (81%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPEWY PIIP VLVNGAEGIGT W TKIPN+NPREIVDN++R+IRGE+P + PW+KN
Sbjct: 884 RIEPEWYCPIIPTVLVNGAEGIGTAWSTKIPNYNPREIVDNMRRLIRGEEPKSLTPWFKN 943
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
F+G I+ DSR++ +GEIA+L DD +EITEL + WT +YK+T L+ +L G++K
Sbjct: 944 FRGTIEKLDDSRYICSGEIALLSDDTIEITELPIRTWTQNYKETVLEPMLEGSDK 998
Score = 49.7 bits (117), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
DYDYL+GM L+ E K++LL+ + K+ EL L+ K +DLW +DLD
Sbjct: 1186 DYDYLVGMAILKLSEEEKDKLLRDSELKLEELKSLESKTWSDLWKEDLD 1234
>gi|358337562|dbj|GAA55912.1| DNA topoisomerase II [Clonorchis sinensis]
Length = 2034
Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/652 (57%), Positives = 445/652 (68%), Gaps = 105/652 (16%)
Query: 26 PANK-MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGL 84
P NK +SVE+IYQKK+QLEHILLRPD+YIGS E ++MW+M+ E M R+I + PGL
Sbjct: 180 PQNKRLSVERIYQKKTQLEHILLRPDSYIGSTERNVQSMWVMDEEKQCMVYRDILFSPGL 239
Query: 85 YKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMI 144
YKIFDEILVNA DNK RDP M C+K+ + E N I +WNNGKGIPVV+HK E ++VPT+I
Sbjct: 240 YKIFDEILVNAADNKVRDPTMTCVKVDIEPEQNMIKIWNNGKGIPVVQHKVENVYVPTLI 299
Query: 145 FGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSK 204
FGHLLTSSNY+D E KVTGGRNGYGAKLCNIFS K
Sbjct: 300 -------------------------FGHLLTSSNYDDTERKVTGGRNGYGAKLCNIFSKK 334
Query: 205 FVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMV 264
F+VETS +YKKSF+QVW DNM+K + P+I DDFT ITF PDL +F MT LD D V
Sbjct: 335 FIVETSSKDYKKSFRQVWTDNMTKTSDPKISPDKGDDFTCITFYPDLQRFGMTELDSDTV 394
Query: 265 DLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRW 324
L RRAYD AA+T VKVFLNG++L +K+F DYV LY E K+++E VNPRW
Sbjct: 395 ALFVRRAYDLAATTSGVKVFLNGKRLAIKSFMDYVDLYVKANKESETTPKVVFEGVNPRW 454
Query: 325 EVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFG 384
+VA+APS GFQQVSFVN IATTKGG+HVD + D + ++IE+VKKK+
Sbjct: 455 QVAVAPSGSGFQQVSFVNGIATTKGGKHVDYIADQLNNKLIEIVKKKSGK---------- 504
Query: 385 NKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT 444
G+ +KPFQ+KNH+W+F+NCLI NPTFDSQTKENMT
Sbjct: 505 ------------------------SGVQIKPFQIKNHMWLFVNCLIENPTFDSQTKENMT 540
Query: 445 LQKGSFGSTC---------------------------------------------VPKLE 459
LQ SFGSTC +PKL+
Sbjct: 541 LQPKSFGSTCTLSEKFVTQASKCGIVESVLSWVRFKAMEKLDKQCHKAKHVKLKGIPKLD 600
Query: 460 DANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQIL 519
DAN+AGTK+S CTLILTEGDSAKSLAV+GLGVVGRD YGVFPLRGKLLNVREA+ KQI+
Sbjct: 601 DANNAGTKHSNQCTLILTEGDSAKSLAVAGLGVVGRDNYGVFPLRGKLLNVREASSKQIM 660
Query: 520 ENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWP 579
+NAEIN L+KI+GLQY KY E +K LRYG++MIMTDQDQDGSHIKGLIINF+H NWP
Sbjct: 661 DNAEINALIKIMGLQYKHKYENPESLKDLRYGKIMIMTDQDQDGSHIKGLIINFVHCNWP 720
Query: 580 TLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
LL+ LEEFITPI+K K ++ELSFYSLPEFEEW+ TTNWHT++IKYYK
Sbjct: 721 NLLKHNVLEEFITPIVKVFKGKDELSFYSLPEFEEWQRSTTNWHTWRIKYYK 772
Score = 142 bits (359), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 88/115 (76%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPEWY PI+PMVL+NGAEGIGTG+ T+IPN+N E++ N+ R++ GED LPM P ++
Sbjct: 1058 RIEPEWYAPIVPMVLINGAEGIGTGYSTRIPNYNVLEVISNLYRLLDGEDTLPMLPSFRG 1117
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
F G I +R++++GE+A+LDDD +EITEL V WT YK+T L+ +L+G +K
Sbjct: 1118 FCGTIQELEANRYMIHGEVAVLDDDTIEITELPVRTWTQTYKETVLEPMLNGTDK 1172
Score = 68.2 bits (165), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 42/65 (64%)
Query: 842 TQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
T++ E DY+Y+LGM WSLT ERK++LL +RD K EL +L+ K + LW DDL L
Sbjct: 1335 TEQTESGGPDYNYILGMPLWSLTKERKDDLLAQRDAKQNELRVLRSKTASMLWRDDLQKL 1394
Query: 902 REKDK 906
E K
Sbjct: 1395 EEAYK 1399
>gi|256083186|ref|XP_002577830.1| DNA topoisomerase II [Schistosoma mansoni]
Length = 1599
Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/648 (56%), Positives = 449/648 (69%), Gaps = 104/648 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++SVE+IYQKK+QLEHILLRPD+YIGS T+ MW+++ HM R+IT+ PGLYKIF
Sbjct: 29 RLSVERIYQKKTQLEHILLRPDSYIGSTLKDTQQMWVLDESQQHMVNRDITFSPGLYKIF 88
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNK RDP M+CIKI +N N + +WN+GKGIPVV HK E +VPT+I
Sbjct: 89 DEILVNAADNKVRDPTMSCIKIDINPAENMVRIWNDGKGIPVVHHKVENTYVPTLI---- 144
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
FGHLLTSSNY+D E KVTGGRNGYGAKLCNIFS KF+VE
Sbjct: 145 ---------------------FGHLLTSSNYDDTERKVTGGRNGYGAKLCNIFSKKFIVE 183
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
TS EYKKSF+QVW DNM+K + P+I + +DFT ITF PDL++F M L++D V L T
Sbjct: 184 TSSKEYKKSFRQVWVDNMTKTSDPKILADKGEDFTCITFYPDLSRFGMNELEQDTVSLFT 243
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAI 328
RRAYD AA+ +KVFLNG++LP+KNF DYV L+ +D D VK++YE VN RW+VA+
Sbjct: 244 RRAYDMAATCNGIKVFLNGKRLPIKNFVDYVNLFIKPNKDDADSVKVVYEAVNQRWQVAV 303
Query: 329 APSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
A S+ GFQQVSFVNSIATTKGG H++ V D IV +++++VKKK+
Sbjct: 304 AVSNTGFQQVSFVNSIATTKGGTHINYVSDQIVNKLMDIVKKKSGK-------------- 349
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
G+ +KPFQ+KNH+W+F+NCLI NPTFDSQTKENMTLQ
Sbjct: 350 --------------------SGVQIKPFQIKNHMWLFVNCLIENPTFDSQTKENMTLQIK 389
Query: 449 SFGSTC---------------------------------------------VPKLEDAND 463
SFGSTC +PKL+DAN+
Sbjct: 390 SFGSTCTLSEKFIGQASKSGIVENVLSWIRFKAMEKMDKQCHKSKHSKLKGIPKLDDANN 449
Query: 464 AGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAE 523
AGTKNS CTLILTEGDSAK+LAV+GLGVVGRD YGVFPLRGKLLNVREA++KQI+ENAE
Sbjct: 450 AGTKNSSQCTLILTEGDSAKTLAVAGLGVVGRDNYGVFPLRGKLLNVREASNKQIMENAE 509
Query: 524 INNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR 583
IN L+KILGLQY KY + + +K LRYG++MIMTDQDQDGSHIKGLIINF+H NWP LL+
Sbjct: 510 INALIKILGLQYKLKYESADTLKDLRYGKIMIMTDQDQDGSHIKGLIINFVHCNWPNLLK 569
Query: 584 LPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+EEFITPI+K K ++E SFYSLPEFEEW++ T NWHT+++KYYK
Sbjct: 570 HNVVEEFITPIVKVFKGKQEHSFYSLPEFEEWQKSTPNWHTWRVKYYK 617
Score = 140 bits (353), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 65/115 (56%), Positives = 88/115 (76%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPEWY PIIPMVLVNGA+GIGTG+ T I N+N EI++N+ RM+ GE+P M P ++
Sbjct: 838 RIEPEWYAPIIPMVLVNGADGIGTGYATHILNYNVIEIINNLYRMLDGEEPHRMLPNFRG 897
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
F G I+ G +R+V GE+A+LDDD LEITEL + WT +YK++ L+ +L+G+EK
Sbjct: 898 FTGTIEDLGSNRYVCYGEVAVLDDDTLEITELPIRVWTQNYKESVLEPMLNGSEK 952
Score = 79.3 bits (194), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 61/103 (59%)
Query: 804 IEEVFHDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSL 863
++E +D++ K K ++ E DEA SQT+ E DY+Y+L M WSL
Sbjct: 1080 LKEANYDSDPVKAWKESIDKAAALQEQEEARTDEAVSQTEAVEAGQPDYNYILNMPLWSL 1139
Query: 864 TMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDK 906
T ERK++LL +RD K EL ILK K+P+DLW +DL L E+ K
Sbjct: 1140 TKERKDDLLAQRDAKQKELLILKSKSPSDLWREDLKKLEEEYK 1182
>gi|360044785|emb|CCD82333.1| putative dna topoisomerase II [Schistosoma mansoni]
Length = 1544
Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/648 (56%), Positives = 449/648 (69%), Gaps = 104/648 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++SVE+IYQKK+QLEHILLRPD+YIGS T+ MW+++ HM R+IT+ PGLYKIF
Sbjct: 29 RLSVERIYQKKTQLEHILLRPDSYIGSTLKDTQQMWVLDESQQHMVNRDITFSPGLYKIF 88
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNK RDP M+CIKI +N N + +WN+GKGIPVV HK E +VPT+I
Sbjct: 89 DEILVNAADNKVRDPTMSCIKIDINPAENMVRIWNDGKGIPVVHHKVENTYVPTLI---- 144
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
FGHLLTSSNY+D E KVTGGRNGYGAKLCNIFS KF+VE
Sbjct: 145 ---------------------FGHLLTSSNYDDTERKVTGGRNGYGAKLCNIFSKKFIVE 183
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
TS EYKKSF+QVW DNM+K + P+I + +DFT ITF PDL++F M L++D V L T
Sbjct: 184 TSSKEYKKSFRQVWVDNMTKTSDPKILADKGEDFTCITFYPDLSRFGMNELEQDTVSLFT 243
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAI 328
RRAYD AA+ +KVFLNG++LP+KNF DYV L+ +D D VK++YE VN RW+VA+
Sbjct: 244 RRAYDMAATCNGIKVFLNGKRLPIKNFVDYVNLFIKPNKDDADSVKVVYEAVNQRWQVAV 303
Query: 329 APSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
A S+ GFQQVSFVNSIATTKGG H++ V D IV +++++VKKK+
Sbjct: 304 AVSNTGFQQVSFVNSIATTKGGTHINYVSDQIVNKLMDIVKKKSGK-------------- 349
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
G+ +KPFQ+KNH+W+F+NCLI NPTFDSQTKENMTLQ
Sbjct: 350 --------------------SGVQIKPFQIKNHMWLFVNCLIENPTFDSQTKENMTLQIK 389
Query: 449 SFGSTC---------------------------------------------VPKLEDAND 463
SFGSTC +PKL+DAN+
Sbjct: 390 SFGSTCTLSEKFIGQASKSGIVENVLSWIRFKAMEKMDKQCHKSKHSKLKGIPKLDDANN 449
Query: 464 AGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAE 523
AGTKNS CTLILTEGDSAK+LAV+GLGVVGRD YGVFPLRGKLLNVREA++KQI+ENAE
Sbjct: 450 AGTKNSSQCTLILTEGDSAKTLAVAGLGVVGRDNYGVFPLRGKLLNVREASNKQIMENAE 509
Query: 524 INNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR 583
IN L+KILGLQY KY + + +K LRYG++MIMTDQDQDGSHIKGLIINF+H NWP LL+
Sbjct: 510 INALIKILGLQYKLKYESADTLKDLRYGKIMIMTDQDQDGSHIKGLIINFVHCNWPNLLK 569
Query: 584 LPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+EEFITPI+K K ++E SFYSLPEFEEW++ T NWHT+++KYYK
Sbjct: 570 HNVVEEFITPIVKVFKGKQEHSFYSLPEFEEWQKSTPNWHTWRVKYYK 617
Score = 140 bits (353), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/115 (56%), Positives = 88/115 (76%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPEWY PIIPMVLVNGA+GIGTG+ T I N+N EI++N+ RM+ GE+P M P ++
Sbjct: 838 RIEPEWYAPIIPMVLVNGADGIGTGYATHILNYNVIEIINNLYRMLDGEEPHRMLPNFRG 897
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
F G I+ G +R+V GE+A+LDDD LEITEL + WT +YK++ L+ +L+G+EK
Sbjct: 898 FTGTIEDLGSNRYVCYGEVAVLDDDTLEITELPIRVWTQNYKESVLEPMLNGSEK 952
Score = 79.3 bits (194), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 61/103 (59%)
Query: 804 IEEVFHDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSL 863
++E +D++ K K ++ E DEA SQT+ E DY+Y+L M WSL
Sbjct: 1080 LKEANYDSDPVKAWKESIDKAAALQEQEEARTDEAVSQTEAVEAGQPDYNYILNMPLWSL 1139
Query: 864 TMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDK 906
T ERK++LL +RD K EL ILK K+P+DLW +DL L E+ K
Sbjct: 1140 TKERKDDLLAQRDAKQKELLILKSKSPSDLWREDLKKLEEEYK 1182
>gi|324500558|gb|ADY40259.1| DNA topoisomerase 2 [Ascaris suum]
Length = 1586
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/673 (56%), Positives = 458/673 (68%), Gaps = 113/673 (16%)
Query: 11 DVQQNGNGP-----SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITET-MW 64
D+Q++G+ P + K+T ++S+EKIYQKKSQLEHILLRPDTYIGSVE MW
Sbjct: 57 DIQEDGDDPLHIFTNIDKET--KRLSIEKIYQKKSQLEHILLRPDTYIGSVEHTDRAPMW 114
Query: 65 LMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNN 124
+ + E + +R+I+YVPGLYKIFDE+LVNA DNKQRDPKM+ IK+T+N+E N I+V+NN
Sbjct: 115 VYDAEAERIVQRDISYVPGLYKIFDEVLVNAADNKQRDPKMSTIKVTINKEKNEIAVFNN 174
Query: 125 GKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEED 184
GKGIPVV HK E ++VP +IF G LLTSSNY+D E
Sbjct: 175 GKGIPVVRHKVENVYVPELIF-------------------------GTLLTSSNYDDSER 209
Query: 185 KVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTK 244
KVTGGRNGYGAKLCNIFS +F VETS EY K FKQ W +NM+K P I S +DFT+
Sbjct: 210 KVTGGRNGYGAKLCNIFSKEFTVETSSKEYGKVFKQTWINNMTKDKEPFIGKSSGEDFTR 269
Query: 245 ITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD 304
+TF PDL+KFKMT LD D+V L++RRAYD A STK VKV+LN + LPV+ F+ YV Y
Sbjct: 270 VTFKPDLSKFKMTELDDDIVALMSRRAYDVAGSTKGVKVYLNNKLLPVQGFKQYVDQYAK 329
Query: 305 RQ-DEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQ 363
D G+P K+IYE N RW+VAI S++GFQQVSFVNSIATTKGGRHVD V D I +
Sbjct: 330 HNLDSQGEPYKVIYETANERWDVAITVSEKGFQQVSFVNSIATTKGGRHVDYVADQITSK 389
Query: 364 IIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIW 423
+I+ +KKK + G+++KPFQ+KNH+W
Sbjct: 390 LIDTIKKK----------------------------------IGKSGISVKPFQIKNHMW 415
Query: 424 IFINCLIVNPTFDSQTKENMTLQKGSFGSTC----------------------------- 454
+F+NCLI NPTFDSQTKE +TLQ SFGS C
Sbjct: 416 VFVNCLIENPTFDSQTKEALTLQSKSFGSKCELSERFVNSVMKCGIVEAVMAWVRFKQQE 475
Query: 455 ----------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKY 498
VPKLEDANDAGTKNS CTLILTEGDSAKSLAVSGLGVVGRD+Y
Sbjct: 476 TLDKKCSSKRTSKLKGVPKLEDANDAGTKNSSLCTLILTEGDSAKSLAVSGLGVVGRDRY 535
Query: 499 GVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTD 558
GVFPLRGK+LNVRE HKQI+ENAEIN L+KI+GLQY KY +DMKTLRYG++M+M D
Sbjct: 536 GVFPLRGKMLNVREGNHKQIMENAEINALIKIIGLQYRLKYDKDDDMKTLRYGKVMVMAD 595
Query: 559 QDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEE 618
QDQDGSHIKGL+INFIH+NWP L+R F+EEFITPI+KATK +EE SF+SLPE+ EW+
Sbjct: 596 QDQDGSHIKGLVINFIHYNWPALIRRNFVEEFITPIVKATKGKEEYSFFSLPEYNEWRNN 655
Query: 619 TTNWHTYKIKYYK 631
T NW +Y+IKYYK
Sbjct: 656 TENWKSYRIKYYK 668
Score = 174 bits (442), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 93/115 (80%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPEWY PIIP VLVNGAEGIGT W TK+PN+NPREIVDNI+R+IRGEDP PM PW+KN
Sbjct: 889 RIEPEWYCPIIPTVLVNGAEGIGTAWSTKVPNYNPREIVDNIRRLIRGEDPKPMVPWFKN 948
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
F+G I+ D RF +GEIAIL DD LEITEL + WT +YK++ L+ LL G++K
Sbjct: 949 FRGTIEQLDDQRFACSGEIAILRDDTLEITELPIRVWTQNYKESVLEPLLEGSDK 1003
Score = 50.1 bits (118), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
DYDYL+GM L+ E K++LL++ + KM+EL L+ DLW+ DLD
Sbjct: 1191 DYDYLVGMAILKLSEEEKDKLLRESEAKMSELKTLEDMTWADLWNADLD 1239
>gi|324500526|gb|ADY40245.1| DNA topoisomerase 2 [Ascaris suum]
Length = 1388
Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/673 (56%), Positives = 458/673 (68%), Gaps = 113/673 (16%)
Query: 11 DVQQNGNGP-----SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITET-MW 64
D+Q++G+ P + K+T ++S+EKIYQKKSQLEHILLRPDTYIGSVE MW
Sbjct: 57 DIQEDGDDPLHIFTNIDKET--KRLSIEKIYQKKSQLEHILLRPDTYIGSVEHTDRAPMW 114
Query: 65 LMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNN 124
+ + E + +R+I+YVPGLYKIFDE+LVNA DNKQRDPKM+ IK+T+N+E N I+V+NN
Sbjct: 115 VYDAEAERIVQRDISYVPGLYKIFDEVLVNAADNKQRDPKMSTIKVTINKEKNEIAVFNN 174
Query: 125 GKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEED 184
GKGIPVV HK E ++VP +IF G LLTSSNY+D E
Sbjct: 175 GKGIPVVRHKVENVYVPELIF-------------------------GTLLTSSNYDDSER 209
Query: 185 KVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTK 244
KVTGGRNGYGAKLCNIFS +F VETS EY K FKQ W +NM+K P I S +DFT+
Sbjct: 210 KVTGGRNGYGAKLCNIFSKEFTVETSSKEYGKVFKQTWINNMTKDKEPFIGKSSGEDFTR 269
Query: 245 ITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD 304
+TF PDL+KFKMT LD D+V L++RRAYD A STK VKV+LN + LPV+ F+ YV Y
Sbjct: 270 VTFKPDLSKFKMTELDDDIVALMSRRAYDVAGSTKGVKVYLNNKLLPVQGFKQYVDQYAK 329
Query: 305 RQ-DEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQ 363
D G+P K+IYE N RW+VAI S++GFQQVSFVNSIATTKGGRHVD V D I +
Sbjct: 330 HNLDSQGEPYKVIYETANERWDVAITVSEKGFQQVSFVNSIATTKGGRHVDYVADQITSK 389
Query: 364 IIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIW 423
+I+ +KKK + G+++KPFQ+KNH+W
Sbjct: 390 LIDTIKKK----------------------------------IGKSGISVKPFQIKNHMW 415
Query: 424 IFINCLIVNPTFDSQTKENMTLQKGSFGSTC----------------------------- 454
+F+NCLI NPTFDSQTKE +TLQ SFGS C
Sbjct: 416 VFVNCLIENPTFDSQTKEALTLQSKSFGSKCELSERFVNSVMKCGIVEAVMAWVRFKQQE 475
Query: 455 ----------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKY 498
VPKLEDANDAGTKNS CTLILTEGDSAKSLAVSGLGVVGRD+Y
Sbjct: 476 TLDKKCSSKRTSKLKGVPKLEDANDAGTKNSSLCTLILTEGDSAKSLAVSGLGVVGRDRY 535
Query: 499 GVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTD 558
GVFPLRGK+LNVRE HKQI+ENAEIN L+KI+GLQY KY +DMKTLRYG++M+M D
Sbjct: 536 GVFPLRGKMLNVREGNHKQIMENAEINALIKIIGLQYRLKYDKDDDMKTLRYGKVMVMAD 595
Query: 559 QDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEE 618
QDQDGSHIKGL+INFIH+NWP L+R F+EEFITPI+KATK +EE SF+SLPE+ EW+
Sbjct: 596 QDQDGSHIKGLVINFIHYNWPALIRRNFVEEFITPIVKATKGKEEYSFFSLPEYNEWRNN 655
Query: 619 TTNWHTYKIKYYK 631
T NW +Y+IKYYK
Sbjct: 656 TENWKSYRIKYYK 668
Score = 174 bits (441), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 93/115 (80%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPEWY PIIP VLVNGAEGIGT W TK+PN+NPREIVDNI+R+IRGEDP PM PW+KN
Sbjct: 889 RIEPEWYCPIIPTVLVNGAEGIGTAWSTKVPNYNPREIVDNIRRLIRGEDPKPMVPWFKN 948
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
F+G I+ D RF +GEIAIL DD LEITEL + WT +YK++ L+ LL G++K
Sbjct: 949 FRGTIEQLDDQRFACSGEIAILRDDTLEITELPIRVWTQNYKESVLEPLLEGSDK 1003
Score = 50.4 bits (119), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
DYDYL+GM L+ E K++LL++ + KM+EL L+ DLW+ DLD
Sbjct: 1191 DYDYLVGMAILKLSEEEKDKLLRESEAKMSELKTLEDMTWADLWNADLD 1239
>gi|324500590|gb|ADY40273.1| DNA topoisomerase 2 [Ascaris suum]
Length = 1560
Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/656 (57%), Positives = 451/656 (68%), Gaps = 106/656 (16%)
Query: 24 KTPANK-MSVEKIYQKKSQLEHILLRPDTYIGSVEPITET-MWLMNRETNHMERREITYV 81
K ANK +S+E+IYQKKSQLEHILLRPDTYIGSVE MW+ + E + +R+ITYV
Sbjct: 15 KENANKRISIERIYQKKSQLEHILLRPDTYIGSVEYTERAPMWVYDAELERIVQRDITYV 74
Query: 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVP 141
PGLYKIFDEILVNA DNKQRDPKMN IK+T+++E I+V+NNGKGIPVV HK EK+FVP
Sbjct: 75 PGLYKIFDEILVNAADNKQRDPKMNVIKVTIDKENCEITVFNNGKGIPVVLHKTEKVFVP 134
Query: 142 TMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIF 201
+IF G LLTSSNY+D E KVTGGRNGYGAKLCN+F
Sbjct: 135 ELIF-------------------------GTLLTSSNYDDTERKVTGGRNGYGAKLCNVF 169
Query: 202 SSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDK 261
S++F +ETS EY KSFKQ W +NM+K PEI +DFTK+TF PDL KF+MT LD
Sbjct: 170 STRFTIETSSKEYGKSFKQTWVNNMTKEREPEIGKSKGEDFTKVTFRPDLAKFRMTELDD 229
Query: 262 DMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQ-DEDGDPVKIIYENV 320
D+V L++RRA+D A ST+ VKVFLN ++LPV+ F+ YV+ Y + G+P IYE V
Sbjct: 230 DIVALMSRRAFDIAGSTRGVKVFLNHKQLPVQGFKQYVEQYVKYNVNAQGEPYGFIYEQV 289
Query: 321 NPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTII 380
N RWEVA+ S+RGFQQVSF NSIATTKGGRHVD +VD + ++I+++KKK
Sbjct: 290 NDRWEVALTVSERGFQQVSFANSIATTKGGRHVDYIVDQVTAKLIDIIKKK--------- 340
Query: 381 MLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTK 440
+G + GG+ +KPFQV+NH+W+F+N LI NPTFDSQ+K
Sbjct: 341 -----------------------VG-KSGGINVKPFQVRNHMWVFVNALIENPTFDSQSK 376
Query: 441 ENMTLQKGSFGSTC---------------------------------------------V 455
E MTLQ SFGS C V
Sbjct: 377 ETMTLQAKSFGSKCELSDKFIQSTMKCGIVEAVMAWVRFKQQESLDKKCSSKKTSKLKGV 436
Query: 456 PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATH 515
PKLEDANDAGTKNS CTLILTEGDSAKSLAVSGLGVVGRD+YGVFPLRGK+LNVRE H
Sbjct: 437 PKLEDANDAGTKNSSHCTLILTEGDSAKSLAVSGLGVVGRDRYGVFPLRGKMLNVREGNH 496
Query: 516 KQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIH 575
KQI+EN EIN L+KI+GLQY KY +DMKTLRYG++M+M DQDQDGSHIKGL+INFIH
Sbjct: 497 KQIMENVEINALLKIIGLQYRLKYENDDDMKTLRYGKVMVMADQDQDGSHIKGLVINFIH 556
Query: 576 HNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP L+R F+EEFITPI+KATK +EE SF+SLPE+ EW+ T NW +Y+IKYYK
Sbjct: 557 FNWPALIRRNFVEEFITPIVKATKGKEEFSFFSLPEYAEWRNNTENWKSYRIKYYK 612
Score = 157 bits (396), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/115 (60%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPEWY PIIP VLVNGAEGIGT W TK+PN+NPREIV+NI+ MIRGE P M PW+KN
Sbjct: 833 RIEPEWYCPIIPTVLVNGAEGIGTAWSTKVPNYNPREIVENIRLMIRGEQPRHMVPWFKN 892
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
F+G I+ ++RFV +GEIAI+ + +EITEL + WT YK++ L+ +L G++K
Sbjct: 893 FRGTIEQMDENRFVCSGEIAIIGEGTIEITELPIRTWTQTYKESVLEPMLDGSDK 947
Score = 50.4 bits (119), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 79/191 (41%), Gaps = 34/191 (17%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDA-LREKDK--- 906
DYDYL+GM L+ E K++LL++ + KM EL L++ + +LW+ DLD L E DK
Sbjct: 1135 DYDYLVGMAIMKLSTEEKDKLLRESEAKMEELKALEEMSWAELWTSDLDHFLVELDKQEA 1194
Query: 907 -----------------IHPCPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGE-- 947
GG R +G + + N + R P + S E
Sbjct: 1195 KEKADLDVQIKNAAKKLAKDAVGGGRKKGNTILAKEVLPDPNGI---RVAPKIDSMREKY 1251
Query: 948 DAPPPTKASPVKKKKPAAKRPAPKSDSSDL-------SDSDGDSDFASRKKKTAAAKKAK 1000
+A T P +K A K K++ D+ D G D A + A K K
Sbjct: 1252 EAKKGTSGEPKVRKPRALKEAKQKNEGGDVRTFFKKTEDGSGQGDQAKEPARKPGATK-K 1310
Query: 1001 PAKKESEYSST 1011
AKK YS +
Sbjct: 1311 VAKKVGWYSQS 1321
>gi|47226022|emb|CAG04396.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1345
Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/704 (54%), Positives = 462/704 (65%), Gaps = 155/704 (22%)
Query: 22 KKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYV 81
K K ++SVE+IYQKK+QLEHILLRPD+YIGSVEP+T+ MW+ + + + R++T+V
Sbjct: 11 KTKKDPKRLSVERIYQKKTQLEHILLRPDSYIGSVEPVTQQMWVYDEDVG-LNCRDVTFV 69
Query: 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVP 141
PGLYKIFDEILVNA DNKQRD M+CIK++++ E NTI +WNNGKGIPVVEHK EK++VP
Sbjct: 70 PGLYKIFDEILVNAADNKQRDKTMSCIKVSIDVENNTIVIWNNGKGIPVVEHKVEKVYVP 129
Query: 142 TMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIF 201
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIF
Sbjct: 130 ALIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIF 164
Query: 202 SSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDK 261
S+KF VET+C E KK+FKQ W DNM + I+S +++T ITF PDL KFKM+ LDK
Sbjct: 165 STKFTVETACKESKKTFKQTWYDNMGRAGDANIRSFDGEEYTCITFRPDLAKFKMSILDK 224
Query: 262 DMVDLITRRAYDAAASTKDVKVFLNGEKLP------------------------------ 291
D V L+TRRAYD A STK ++V+ NG+KLP
Sbjct: 225 DTVALMTRRAYDIAGSTKGIRVYFNGKKLPVCCGFTCVDRWCHRKGEFTTSEKMCGLFNV 284
Query: 292 ------------------VKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSD 332
V F+ YV LY D+ DE G+ + +++E VN RWEV + S+
Sbjct: 285 CGHYMSLCEIRMIVFIFQVTGFRSYVDLYVKDKVDEMGNALNVVHEVVNERWEVCLTMSE 344
Query: 333 RGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKN 392
+GFQQVSFVNSIATTKGGRHVD V D +V ++IEVVKKKNK
Sbjct: 345 KGFQQVSFVNSIATTKGGRHVDYVADQVVSKLIEVVKKKNK------------------- 385
Query: 393 NKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS 452
G+A+KPFQVKNH+W+F+NCL+ NPTFDSQTKENMTLQ+ SFGS
Sbjct: 386 ----------------AGVAVKPFQVKNHMWLFVNCLVENPTFDSQTKENMTLQQKSFGS 429
Query: 453 TC---------------------------------------------VPKLEDANDAGTK 467
TC VPKL+DANDAG K
Sbjct: 430 TCPLSDKFIKQATASGIVESIMNWVKFKAQSQLNKKCSAVKHTKIKGVPKLDDANDAGGK 489
Query: 468 NSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNL 527
NSI CTLILTEGDSAK+LAVSGLGVVGRD+YGVFPLRGK+LNVREA+ KQI+ENAEINN+
Sbjct: 490 NSIGCTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLRGKMLNVREASLKQIMENAEINNI 549
Query: 528 VKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFL 587
+KILGLQY K Y+ E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LLR F+
Sbjct: 550 IKILGLQYKKNYSDPESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHNFI 609
Query: 588 EEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
EEFITPIIKA+ + +LSFYS+PEF WKE N ++KIKYYK
Sbjct: 610 EEFITPIIKASHKKTQLSFYSIPEFSAWKESQANHKSWKIKYYK 653
Score = 150 bits (380), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVLVNGAEGIGTGW +KIPN++ REIV+NI RM+ G++PLPM P YK
Sbjct: 874 RVEPEWYIPIIPMVLVNGAEGIGTGWASKIPNYDIREIVNNIHRMLSGDEPLPMLPNYKG 933
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++++ +GE+AI+D +EI+EL V WT YK+ L+ +L+G EK
Sbjct: 934 FKGTIEQVMNNQYMNSGEVAIIDSTTIEISELPVKAWTQTYKENVLEPMLNGTEK 988
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
DY+YLL M W LT E+K EL K+RD K+TELN LKKK+P DLW +DL A E+
Sbjct: 1150 DYNYLLSMPMWFLTKEKKEELCKQRDAKLTELNTLKKKSPADLWKEDLAAFSEE 1203
>gi|324500583|gb|ADY40270.1| DNA topoisomerase 2 [Ascaris suum]
Length = 1514
Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/656 (57%), Positives = 451/656 (68%), Gaps = 106/656 (16%)
Query: 24 KTPANK-MSVEKIYQKKSQLEHILLRPDTYIGSVEPITET-MWLMNRETNHMERREITYV 81
K ANK +S+E+IYQKKSQLEHILLRPDTYIGSVE MW+ + E + +R+ITYV
Sbjct: 15 KENANKRISIERIYQKKSQLEHILLRPDTYIGSVEYTERAPMWVYDAELERIVQRDITYV 74
Query: 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVP 141
PGLYKIFDEILVNA DNKQRDPKMN IK+T+++E I+V+NNGKGIPVV HK EK+FVP
Sbjct: 75 PGLYKIFDEILVNAADNKQRDPKMNVIKVTIDKENCEITVFNNGKGIPVVLHKTEKVFVP 134
Query: 142 TMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIF 201
+IF G LLTSSNY+D E KVTGGRNGYGAKLCN+F
Sbjct: 135 ELIF-------------------------GTLLTSSNYDDTERKVTGGRNGYGAKLCNVF 169
Query: 202 SSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDK 261
S++F +ETS EY KSFKQ W +NM+K PEI +DFTK+TF PDL KF+MT LD
Sbjct: 170 STRFTIETSSKEYGKSFKQTWVNNMTKEREPEIGKSKGEDFTKVTFRPDLAKFRMTELDD 229
Query: 262 DMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQ-DEDGDPVKIIYENV 320
D+V L++RRA+D A ST+ VKVFLN ++LPV+ F+ YV+ Y + G+P IYE V
Sbjct: 230 DIVALMSRRAFDIAGSTRGVKVFLNHKQLPVQGFKQYVEQYVKYNVNAQGEPYGFIYEQV 289
Query: 321 NPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTII 380
N RWEVA+ S+RGFQQVSF NSIATTKGGRHVD +VD + ++I+++KKK
Sbjct: 290 NNRWEVALTVSERGFQQVSFANSIATTKGGRHVDYIVDQVTAKLIDIIKKK--------- 340
Query: 381 MLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTK 440
+G + GG+ +KPFQV+NH+W+F+N LI NPTFDSQ+K
Sbjct: 341 -----------------------VG-KSGGINVKPFQVRNHMWVFVNALIENPTFDSQSK 376
Query: 441 ENMTLQKGSFGSTC---------------------------------------------V 455
E MTLQ SFGS C V
Sbjct: 377 ETMTLQAKSFGSKCELSDKFIQSTMKCGIVEAVMAWVRFKQQESLDKKCSSKKTSKLKGV 436
Query: 456 PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATH 515
PKLEDANDAGTKNS CTLILTEGDSAKSLAVSGLGVVGRD+YGVFPLRGK+LNVRE H
Sbjct: 437 PKLEDANDAGTKNSSHCTLILTEGDSAKSLAVSGLGVVGRDRYGVFPLRGKMLNVREGNH 496
Query: 516 KQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIH 575
KQI+EN EIN L+KI+GLQY KY +DMKTLRYG++M+M DQDQDGSHIKGL+INFIH
Sbjct: 497 KQIMENVEINALLKIIGLQYRLKYENDDDMKTLRYGKVMVMADQDQDGSHIKGLVINFIH 556
Query: 576 HNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP L+R F+EEFITPI+KATK +EE SF+SLPE+ EW+ T NW +Y+IKYYK
Sbjct: 557 FNWPALIRRNFVEEFITPIVKATKGKEEFSFFSLPEYAEWRNNTENWKSYRIKYYK 612
Score = 156 bits (395), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/115 (60%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPEWY PIIP VLVNGAEGIGT W TK+PN+NPREIV+NI+ MIRGE P M PW+KN
Sbjct: 833 RIEPEWYCPIIPTVLVNGAEGIGTAWSTKVPNYNPREIVENIRLMIRGEQPRHMVPWFKN 892
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
F+G I+ ++RFV +GEIAI+ + +EITEL + WT YK++ L+ +L G++K
Sbjct: 893 FRGTIEQMDENRFVCSGEIAIIGEGTIEITELPIRTWTQTYKESVLEPMLDGSDK 947
Score = 50.8 bits (120), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 79/191 (41%), Gaps = 34/191 (17%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDA-LREKDK--- 906
DYDYL+GM L+ E K++LL++ + KM EL L++ + +LW+ DLD L E DK
Sbjct: 1135 DYDYLVGMAIMKLSTEEKDKLLRESEAKMEELKALEEMSWAELWTSDLDHFLVELDKQEA 1194
Query: 907 -----------------IHPCPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGE-- 947
GG R +G + + N + R P + S E
Sbjct: 1195 KEKADLDVQIKNAAKKLAKDAVGGGRKKGNTILAKEVLPDPNGI---RVAPKIDSMREKY 1251
Query: 948 DAPPPTKASPVKKKKPAAKRPAPKSDSSDL-------SDSDGDSDFASRKKKTAAAKKAK 1000
+A T P +K A K K++ D+ D G D A + A K K
Sbjct: 1252 EAKKGTSGEPKVRKPRALKEAKQKNEGGDVRTFFKKTEDGSGQGDQAKEPARKPGATK-K 1310
Query: 1001 PAKKESEYSST 1011
AKK YS +
Sbjct: 1311 VAKKVGWYSQS 1321
>gi|196000919|ref|XP_002110327.1| hypothetical protein TRIADDRAFT_23201 [Trichoplax adhaerens]
gi|190586278|gb|EDV26331.1| hypothetical protein TRIADDRAFT_23201, partial [Trichoplax
adhaerens]
Length = 1164
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/655 (56%), Positives = 455/655 (69%), Gaps = 114/655 (17%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++SVE+IYQKKSQLEHILLRPDTYIGSVE IT+TMW++ E M + ITY PGLYKIF
Sbjct: 11 RLSVERIYQKKSQLEHILLRPDTYIGSVEHITQTMWVI--EDGKMMNKSITYPPGLYKIF 68
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDP+M+ IKIT++ E N + +WNNG+GIPV H++E ++VPT+IFGHL
Sbjct: 69 DEILVNAADNKQRDPRMDTIKITIDPENNLLKIWNNGRGIPVEIHREENVYVPTLIFGHL 128
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
LTSSNYND +E KVTGGRNGYGAKLCNIFS++F VE
Sbjct: 129 LTSSNYND-------------------------DERKVTGGRNGYGAKLCNIFSTEFKVE 163
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKS--GSKDDFTKITFTPDLTKFKMTSLDKDMVDL 266
T ++ K F Q W +NMSK P+I + SK +FT ITF PDL KF +T L D+V L
Sbjct: 164 TYSADSGKQFSQTWNNNMSKAREPKITAIEKSKQEFTCITFKPDLQKFGLTHLTSDIVSL 223
Query: 267 ITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDGDPVKIIYENVN 321
+TRRAYD AA+ + VKV+LNG+++P+K F+DYV+L+ D +ED + KI +E VN
Sbjct: 224 MTRRAYDIAAAARGVKVYLNGDRIPIKTFKDYVELFLANEEKDDGEEDKEKRKITHEIVN 283
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RWEV + SDRGFQQ SFVNSIATTKGG HV+ VVD +V++++ VKKKNK
Sbjct: 284 GRWEVCLTASDRGFQQASFVNSIATTKGGTHVNHVVDQLVEKLMGAVKKKNK-------- 335
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
GG+ +KP+Q+KNH+W+FINCLI NP+FDSQTKE
Sbjct: 336 ---------------------------GGIDVKPYQIKNHMWVFINCLIENPSFDSQTKE 368
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTL+ SFGS+C +P
Sbjct: 369 NMTLRAKSFGSSCNLSEKFIKGALGCGVVERILNWVRFKTQAQLSKKCSASKHSKLKGIP 428
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAGT+NS DCTLILTEGDSAK+LAVSGL VVGRDKYGVFPLRGKLLN REA+ K
Sbjct: 429 KLDDANDAGTRNSSDCTLILTEGDSAKALAVSGLSVVGRDKYGVFPLRGKLLNTREASSK 488
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
Q++ENAEINN++KILGL Y+KKY +K+LRYG LMIM DQDQDGSHIKGL+INFIHH
Sbjct: 489 QVMENAEINNIIKILGLHYNKKYNDDVSLKSLRYGNLMIMADQDQDGSHIKGLLINFIHH 548
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ PFL+EFITPI+K TK + E++FYS+PEFEEWK+ T ++ ++K+KYYK
Sbjct: 549 NWPSLLQQPFLKEFITPIVKVTKGKNEIAFYSIPEFEEWKQNTASYKSWKVKYYK 603
Score = 152 bits (383), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEP+WY P+IP+VLVNGAEGIGTG+ T+IPN+NPREIVDN+KR++ GE+P+ M PWYKN
Sbjct: 824 RIEPDWYAPLIPVVLVNGAEGIGTGYSTRIPNYNPREIVDNLKRLLAGEEPIEMHPWYKN 883
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKGEI ++++ ++G I +++ LEI EL + WT YK+ L+ +LHG EK
Sbjct: 884 FKGEIKQVEENKYQIDGVIKKINETTLEIVELPIRTWTQAYKEGVLEPMLHGGEK 938
Score = 61.2 bits (147), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 824 ERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELN 883
+ +++ E E+ +A Q E D D++Y+L M WSLT ERK+EL+ ++ K+ E
Sbjct: 1080 QNKQKSVVESEESDASEQ---ETDEGPDFNYILNMNMWSLTKERKDELIANKNKKIAEYQ 1136
Query: 884 ILKKKAPTDLWSDDLDALREK 904
LK+K P LW +D++ E+
Sbjct: 1137 TLKEKTPKMLWLEDIEVFLEE 1157
>gi|426339768|ref|XP_004033813.1| PREDICTED: DNA topoisomerase 2-beta [Gorilla gorilla gorilla]
Length = 1518
Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/616 (58%), Positives = 447/616 (72%), Gaps = 68/616 (11%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+ + MW+ + + M RE+T+VP
Sbjct: 37 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLMQFMWVYDEDVG-MNCREVTFVP 95
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 96 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 155
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 156 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 190
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD
Sbjct: 191 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKD 250
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S + VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 251 IVALMTRRAYDLAGSCRGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 310
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 311 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 362
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPT-----FD 436
G+++KPFQV++ ++I NC IV F
Sbjct: 363 ---------------------------AGVSVKPFQVRDALYIASNCGIVESILNWVKFK 395
Query: 437 SQTKENMTLQKGSFGST-CVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGR 495
+QT+ N + +PKL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GR
Sbjct: 396 AQTQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGR 455
Query: 496 DKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMI 555
D+YGVFPLRGK+LNVREA+HKQI+ENAEINN++KI+GLQY K Y E +KTLRYG++MI
Sbjct: 456 DRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMI 515
Query: 556 MTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEW 615
MTDQDQDGSHIKGL+INFIHHNWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EW
Sbjct: 516 MTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEW 575
Query: 616 KEETTNWHTYKIKYYK 631
K+ N +KIKYYK
Sbjct: 576 KKHIENQKAWKIKYYK 591
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 812 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 871
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 872 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 926
Score = 67.8 bits (164), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 53/84 (63%), Gaps = 6/84 (7%)
Query: 824 ERQERQAAEGE----DDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKM 879
E QE+ A E E D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K
Sbjct: 1069 EAQEKAAEEDETQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKG 1126
Query: 880 TELNILKKKAPTDLWSDDLDALRE 903
E+N LK+K+P+DLW +DL A E
Sbjct: 1127 REVNDLKRKSPSDLWKEDLAAFVE 1150
>gi|391341933|ref|XP_003745280.1| PREDICTED: DNA topoisomerase 2-alpha-like [Metaseiulus
occidentalis]
Length = 1411
Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/649 (57%), Positives = 441/649 (67%), Gaps = 111/649 (17%)
Query: 32 VEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEI 91
VEKIYQKK+QLEHILLRPDTYIGSVE T+ +W+ + + M REITYVPGLYKIFDEI
Sbjct: 6 VEKIYQKKTQLEHILLRPDTYIGSVEQDTQKIWVYDGPEHGMVYREITYVPGLYKIFDEI 65
Query: 92 LVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTS 151
LVNA DNKQRD N IK+ ++ IS++NNGKGIPVV HK+EK +VPT+I
Sbjct: 66 LVNAADNKQRDKSQNMIKVDIDPVKGMISIYNNGKGIPVVMHKEEKCYVPTLI------- 118
Query: 152 SNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSC 211
FGHLLTSSNYND+E KVTGGRNGYGAKLCNIFS+KF +ETS
Sbjct: 119 ------------------FGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTKFTLETSS 160
Query: 212 SEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRA 271
KK+FKQ W +NM+ +I S+D +TK+TF PDL KF M LDKD V L +RRA
Sbjct: 161 KADKKAFKQSWSNNMTVTGEAKIVESSQD-YTKVTFYPDLKKFNMKELDKDFVALASRRA 219
Query: 272 YDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR---QDEDGDPVKIIYENVNPRWEVAI 328
YD A T VKV LNGE LPVKNF DYV L+T + +DED P+ +++E V+ RWEVA
Sbjct: 220 YDVAGCTPGVKVQLNGELLPVKNFLDYVNLFTSKCTNEDED-KPLTVVHEIVSSRWEVAC 278
Query: 329 APSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
P+ G F+Q+SFVN+IATTKGG HV+ VVDAI K++ + VKKKNK
Sbjct: 279 CPAPEGEFKQMSFVNNIATTKGGSHVEYVVDAISKRLTDQVKKKNKQ------------- 325
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
G+ + Q+++H+WIF+NCLI NPTFDSQTKENMTLQ
Sbjct: 326 ----------------------GVNITKKQIRDHMWIFVNCLIENPTFDSQTKENMTLQV 363
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
FGSTC +PKLEDAN
Sbjct: 364 KKFGSTCDMSDKFFNGVLKSGIIDSIMMFVHFKAQKEMNKKCSKTKHAKLKGIPKLEDAN 423
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAGT SIDCTLILTEGDSAK+LAVSGLGV+GRD+YGVFPLRGKLLNVREAT KQ+LENA
Sbjct: 424 DAGTSRSIDCTLILTEGDSAKTLAVSGLGVIGRDRYGVFPLRGKLLNVREATTKQLLENA 483
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY KKY EDM++LRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 484 EINNIIKIVGLQYKKKYEAPEDMRSLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 543
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
++ FLEEFITPI+K K E SF+SLPEFEEWK T NW ++++KYYK
Sbjct: 544 QMNFLEEFITPIVKVFKGSNEQSFFSLPEFEEWKVATPNWESWRVKYYK 592
Score = 148 bits (374), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/135 (50%), Positives = 100/135 (74%), Gaps = 6/135 (4%)
Query: 644 NLHKVTSDSISMFI----GRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDN 699
NL D++ ++ +IEP +Y+PIIPMVLVNGAEGIGTGW TKIPN+NPR++V+N
Sbjct: 794 NLFHADDDAVLDYLYDDNQKIEPNYYLPIIPMVLVNGAEGIGTGWSTKIPNYNPRDVVEN 853
Query: 700 IKRMIRGEDPLPMKPWYKNFKGEIDYC-GDSRFVVNGEIAILDDDKLEITELQVGKWTTD 758
++R+++G+ P M PWYK F+GEI SR VV+GEI+ L +++++ITEL + WT
Sbjct: 854 VRRLLKGQPPKKMTPWYKGFEGEIVALDSGSRIVVHGEISTLSNNRVQITELPIKVWTQA 913
Query: 759 YKD-TLDTLLHGAEK 772
+K+ L++LLHG++K
Sbjct: 914 FKENVLESLLHGSDK 928
Score = 92.0 bits (227), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 60/89 (67%), Gaps = 6/89 (6%)
Query: 822 QLERQERQAAEG-EDDEAG-----SQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKR 875
Q QE++A G EDDEA SQ + + + KDYDYLL MT WSLT ERK ELLKKR
Sbjct: 1073 QKSEQEKEAEAGIEDDEAEGSREESQPRSDSNQTKDYDYLLSMTMWSLTFERKEELLKKR 1132
Query: 876 DDKMTELNILKKKAPTDLWSDDLDALREK 904
D+K+TEL L+ K P DLW++DLDA K
Sbjct: 1133 DNKITELKTLEGKTPKDLWNEDLDAFSAK 1161
>gi|403304571|ref|XP_003942869.1| PREDICTED: DNA topoisomerase 2-alpha [Saimiri boliviensis
boliviensis]
Length = 1471
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/615 (57%), Positives = 429/615 (69%), Gaps = 107/615 (17%)
Query: 63 MWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVW 122
MW+ + + + RE+T+VPGLYKIFDEILVNA DNKQRDPKM+CI++T++ E N IS+W
Sbjct: 1 MWVYDEDVG-INYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIW 59
Query: 123 NNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDE 182
NNGKGIPVVEHK EKM+VP +IF G LLTSSNY+D+
Sbjct: 60 NNGKGIPVVEHKVEKMYVPALIF-------------------------GQLLTSSNYDDD 94
Query: 183 EDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDF 242
E KVTGGRNGYGAKLCNIFS+KF VET+C EYKK FKQ W DNM + E+K + +D+
Sbjct: 95 EKKVTGGRNGYGAKLCNIFSTKFTVETACREYKKMFKQTWMDNMGRAGEMELKPFNGEDY 154
Query: 243 TKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY 302
T ITF PDL+KFKM SLDKD+V L+ RRAYD A STKDVKVFLNG KLPVK F+ YV +Y
Sbjct: 155 TCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMY 214
Query: 303 -TDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIV 361
D+ DE G+P+K+++E VN RWEV + S++GFQQ+SFVNSIAT+KGGRHVD V D IV
Sbjct: 215 LKDKLDETGNPLKVVHEQVNHRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIV 274
Query: 362 KQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNH 421
++++VVKKKNK GG+A+K QVKNH
Sbjct: 275 TKLVDVVKKKNK-----------------------------------GGVAVKAHQVKNH 299
Query: 422 IWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC--------------------------- 454
+WIF+N LI NPTFDSQTKENMTLQ SFGSTC
Sbjct: 300 MWIFVNALIENPTFDSQTKENMTLQPKSFGSTCHLSEKFIKAAIGCGIVESILNWVKFKA 359
Query: 455 ------------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRD 496
+PKL+DANDAG +NS +CTLILTEGDSAK+LAVSGLGVVGRD
Sbjct: 360 QVQLNKKCSAVKHNRIKGIPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRD 419
Query: 497 KYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIM 556
+YGVFPLRGK+LNVREA+HKQI+ENAEINN++KI+GLQY K Y + +KTLRYG++M
Sbjct: 420 RYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMXX 479
Query: 557 TDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWK 616
DQDGSHIKGL+INFIHHNWP+LLR FLEEFITPI+K +K ++E++FYSLPEFEEWK
Sbjct: 480 XXXDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWK 539
Query: 617 EETTNWHTYKIKYYK 631
T + +K+KYYK
Sbjct: 540 SSTPHHKKWKVKYYK 554
Score = 152 bits (384), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 775 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLMDGEEPLPMLPSYKN 834
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V++GE+AIL+ +EI+EL V WT YK+ L+ +L+G EK
Sbjct: 835 FKGTIEELAPNQYVISGEVAILNSTTIEISELPVRTWTQTYKEQVLEPMLNGTEK 889
Score = 57.8 bits (138), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL + R++K EL+ LK+K+P+DLW +DL E
Sbjct: 1065 FNYLLDMPLWYLTKEKKDELCRLRNEKEQELDTLKRKSPSDLWKEDLATFIE 1116
>gi|194383172|dbj|BAG59142.1| unnamed protein product [Homo sapiens]
Length = 1178
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/615 (57%), Positives = 429/615 (69%), Gaps = 107/615 (17%)
Query: 63 MWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVW 122
MW+ + + M RE+T+VPGLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+W
Sbjct: 1 MWVYDEDVG-MNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIW 59
Query: 123 NNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDE 182
NNGKGIPVVEHK EK++VP +IF G LLTSSNY+D+
Sbjct: 60 NNGKGIPVVEHKVEKVYVPALIF-------------------------GQLLTSSNYDDD 94
Query: 183 EDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDF 242
E KVTGGRNGYGAKLCNIFS+KF VET+C EYK SFKQ W +NM K + +IK +D+
Sbjct: 95 EKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDY 154
Query: 243 TKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY 302
T ITF PDL+KFKM LDKD+V L+TRRAYD A S + VKV NG+KLPV F+ YV LY
Sbjct: 155 TCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCRGVKVMFNGKKLPVNGFRSYVGLY 214
Query: 303 T-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIV 361
D+ DE G +K+I+E N RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V
Sbjct: 215 VKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVV 274
Query: 362 KQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNH 421
++IEVVKKKNK G+++KPFQVKNH
Sbjct: 275 GKLIEVVKKKNK-----------------------------------AGVSVKPFQVKNH 299
Query: 422 IWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC--------------------------- 454
IW+FINCLI NPTFDSQTKENMTLQ SFGS C
Sbjct: 300 IWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKA 359
Query: 455 ------------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRD 496
+PKL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD
Sbjct: 360 QTQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRD 419
Query: 497 KYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIM 556
+YGVFPLRGK+LNVREA+HKQI+ENAEINN++KI+GL+Y K Y E +KTLRYG++MIM
Sbjct: 420 RYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLRYKKSYDDAESLKTLRYGKIMIM 479
Query: 557 TDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWK 616
TDQDQDGSHIKGL+INFIHHNWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK
Sbjct: 480 TDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWK 539
Query: 617 EETTNWHTYKIKYYK 631
+ N +KIKYYK
Sbjct: 540 KHIENQKAWKIKYYK 554
Score = 149 bits (376), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 775 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 834
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 835 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 889
Score = 68.6 bits (166), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 7/89 (7%)
Query: 824 ERQERQAAEGE----DDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKM 879
E QE+ A E E D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K
Sbjct: 1032 EAQEKAAEEDETQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKG 1089
Query: 880 TELNILKKKAPTDLWSDDLDALREK-DKI 907
E+N LK+K+P+DLW +DL A E+ DK+
Sbjct: 1090 REVNDLKRKSPSDLWKEDLAAFVEELDKV 1118
>gi|351698720|gb|EHB01639.1| DNA topoisomerase 2-alpha, partial [Heterocephalus glaber]
Length = 1491
Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/649 (55%), Positives = 437/649 (67%), Gaps = 142/649 (21%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 26 RLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDIG-INYREVTFVPGLYKIF 84
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 85 DEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIF--- 141
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E
Sbjct: 142 ----------------------GQLLTSSNYDDDE------------------------- 154
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
K+ W+DNM + E+K S +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 155 ----------KKTWRDNMGRAGEMELKPFSGEDYTCITFQPDLSKFKMQSLDKDIVALMV 204
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE G+P+K+I+E VN RWEV
Sbjct: 205 RRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETGNPLKVIHEQVNHRWEVC 264
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 265 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNK-------------- 310
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 311 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQA 349
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGSTC +PKL+DAN
Sbjct: 350 KSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDAN 409
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG++NS +CTLILTEGDSAK+LAVSGLGVVGRD+YGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 410 DAGSRNSTECTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLRGKILNVREASHKQIMENA 469
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 470 EINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 529
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
R FLEEFITPI+K +K ++E++FYSLPEFEEWK T N +K+KYYK
Sbjct: 530 RHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYK 578
Score = 154 bits (389), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVLVNGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 799 RVEPEWYIPIIPMVLVNGAEGIGTGWSCKIPNFDVREVVNNIRRLMDGEEPLPMLPSYKN 858
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F+G I+ +++V+NGE+AIL+ +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 859 FRGTIEELAPNQYVINGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 913
Score = 60.8 bits (146), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
+ YLL M W LT E+K+EL K+R +K EL+ LKKK+P+DLW +DL A E
Sbjct: 1089 FAYLLDMPLWYLTKEKKDELCKQRSEKEQELHTLKKKSPSDLWKEDLAAFVE 1140
>gi|449669861|ref|XP_002158728.2| PREDICTED: DNA topoisomerase 2-beta-like, partial [Hydra
magnipapillata]
Length = 1330
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/671 (54%), Positives = 445/671 (66%), Gaps = 114/671 (16%)
Query: 11 DVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRET 70
D+ N + P K ++SVE+IYQKKSQLEHI+LRPD+YIGS EP ++MW+ + E+
Sbjct: 5 DIDMNIDSVVPMKN---KRLSVERIYQKKSQLEHIILRPDSYIGSTEPCQQSMWVWDDES 61
Query: 71 NHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPV 130
+ + + IT+ PGLYKIFDEI+VNA DNKQRD KMN IK+ ++ E N ISVWNNG+GIPV
Sbjct: 62 SSIISKNITFSPGLYKIFDEIIVNAADNKQRDVKMNTIKVNIDVEKNIISVWNNGRGIPV 121
Query: 131 VEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGR 190
HK++ ++VPT+IFGHLLTSSNY +D E KV GGR
Sbjct: 122 EMHKEQNVYVPTLIFGHLLTSSNY-------------------------DDTEKKVVGGR 156
Query: 191 NGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPD 250
NG+GAKLCNIFS+KF +ET C K FKQVWK+NMSK I S DFT +TF+PD
Sbjct: 157 NGFGAKLCNIFSTKFSIETGCD--GKKFKQVWKNNMSKAEPEHIVDYSGSDFTCVTFSPD 214
Query: 251 LTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY--TDRQDE 308
L KFKM LD D V L+ RRAYD A + V V+LNGEKL VK+F+DYV LY T + E
Sbjct: 215 LPKFKMDKLDNDFVSLLKRRAYDMAGVCRGVSVYLNGEKLKVKSFKDYVGLYVKTACKTE 274
Query: 309 DGDPV--KIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIE 366
+G+ KII+E VNPRWE+ + S+ GFQ SFVNSIATTKGG HV +VD + ++I
Sbjct: 275 NGEEQGPKIIHEIVNPRWEICVTVSESGFQHSSFVNSIATTKGGTHVTYIVDQLCDKLIA 334
Query: 367 VVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFI 426
VKKK GG +KPF VK+H+W+F+
Sbjct: 335 TVKKKTGK----------------------------------GGFDIKPFHVKSHLWVFV 360
Query: 427 NCLIVNPTFDSQTKENMTLQKGSFGSTC-------------------------------- 454
N LI NPTFDSQTKENMTL+K +FGSTC
Sbjct: 361 NTLIENPTFDSQTKENMTLRKSAFGSTCELSDKYIKMVQDTGVLENILSWVKFKSEAQLN 420
Query: 455 -------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVF 501
VPKLEDANDAGTK S DCTLI+TEGDSAK+L ++GL VVGRDKYGVF
Sbjct: 421 KKGSSSKHSRLKGVPKLEDANDAGTKRSRDCTLIVTEGDSAKALVMAGLSVVGRDKYGVF 480
Query: 502 PLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQ 561
PLRGKLLNVR+A+H QI+ NAEI +LVKI+GLQ+ KKY DMKTLRYG LMIM DQDQ
Sbjct: 481 PLRGKLLNVRDASHSQIMNNAEIGSLVKIIGLQFGKKYENENDMKTLRYGHLMIMADQDQ 540
Query: 562 DGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREE-LSFYSLPEFEEWKEETT 620
DGSHIKGL+INFIH NWP LL++PFLEEFITPIIKA+K+++E +SF+S+PEFEEWKE T
Sbjct: 541 DGSHIKGLVINFIHANWPGLLKIPFLEEFITPIIKASKSKKETISFFSIPEFEEWKEATP 600
Query: 621 NWHTYKIKYYK 631
N+ ++ IKYYK
Sbjct: 601 NYKSWHIKYYK 611
Score = 149 bits (377), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/115 (61%), Positives = 86/115 (74%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPEWY PIIPM LVNGAEGIGTG+ TKIPN + R+IV+N+KRMI GE+P PM P YK+
Sbjct: 832 KIEPEWYCPIIPMCLVNGAEGIGTGYSTKIPNFDIRDIVENVKRMINGEEPQPMFPSYKD 891
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
F GEI GD +F+ G I I+D+ +EITEL V WT YK+T LD L+G EK
Sbjct: 892 FTGEIVQEGDQKFICQGTINIIDETTIEITELPVRTWTQAYKETVLDVYLYGNEK 946
Score = 64.3 bits (155), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 84/191 (43%), Gaps = 17/191 (8%)
Query: 829 QAAEGEDDEAGSQTQEEEDPDKD------------YDYLLGMTFWSLTMERKNELLKKRD 876
+A + E D++G + E P D + YLL M SL+ E+K ELL +RD
Sbjct: 1085 KAWKAEVDKSGHLEDDSEAPTTDVASSSSSLSGPDFAYLLSMAIMSLSREKKEELLNQRD 1144
Query: 877 DKMTELNILKKKAPTDLWSDDLDALREKDKIHPCPGGNRTR---GLALKRQTRYQPSNRV 933
+K ELN LK+K P+DLW+DDL+ E+ + R L+ K +R N+
Sbjct: 1145 EKKKELNALKQKTPSDLWTDDLNKFCEELERVEEQEKELNRAVDALSNKSNSRSTKGNKA 1204
Query: 934 LTSRDEPMVVSSGEDAPPPTKASPVKKKKPAAKR--PAPKSDSSDLSDSDGDSDFASRKK 991
+ ++ + TK PVK + P+ +S +D D A R K
Sbjct: 1205 KKVPVKSKDIAKAFEKKSDTKVLPVKDASSNVIKSEPSEQSQENDNEDKGEILSLADRLK 1264
Query: 992 KTAAAKKAKPA 1002
K + K K A
Sbjct: 1265 KNISEGKKKQA 1275
>gi|297272911|ref|XP_002808175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha-like
[Macaca mulatta]
Length = 1481
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/639 (56%), Positives = 433/639 (67%), Gaps = 128/639 (20%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 15 RLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIF 73
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 74 DEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIF--- 130
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVT IF + +
Sbjct: 131 ----------------------GQLLTSSNYDDDEKKVT-----------XIFHLSYSL- 156
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
W DNM + E+K S +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 157 ---------LPXTWMDNMGRAGEMELKPFSGEDYTCITFQPDLSKFKMQSLDKDIVALMV 207
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE G+P+K+I+E VN RWEV
Sbjct: 208 RRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETGNPLKVIHEQVNHRWEVC 267
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 268 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNK-------------- 313
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 314 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQP 352
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGSTC +PKL+DAN
Sbjct: 353 KSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDAN 412
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG +NS DCTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 413 DAGGRNSTDCTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKMLNVREASHKQIMENA 472
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 473 EINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 532
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN 621
R FLEEFITPI+K +K ++E++FYSLPEFEEWK T N
Sbjct: 533 RHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPN 571
Score = 152 bits (384), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 802 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLMDGEEPLPMLPSYKN 861
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V++GE+AIL+ +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 862 FKGTIEELAPNQYVISGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 916
Score = 57.4 bits (137), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
++YLL M W LT E+K+EL + R++K EL+ LK+K+P+DLW +DL E+
Sbjct: 1092 FNYLLDMPLWYLTKEKKDELCRLRNEKEQELDTLKRKSPSDLWKEDLATFIEE 1144
>gi|431890663|gb|ELK01542.1| DNA topoisomerase 2-alpha [Pteropus alecto]
Length = 1484
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/649 (55%), Positives = 435/649 (67%), Gaps = 142/649 (21%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 15 RLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDIG-INYREVTFVPGLYKIF 73
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 74 DEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIF--- 130
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E
Sbjct: 131 ----------------------GQLLTSSNYDDDE------------------------- 143
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
K+ W DNM + E+K + +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 144 ----------KKTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMV 193
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE G+P+KII+E VN RWEV
Sbjct: 194 RRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKVDETGNPLKIIHEQVNHRWEVC 253
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 254 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNK-------------- 299
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 300 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQV 338
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
+FGSTC +PKL+DAN
Sbjct: 339 KNFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQIQLNKKCSAVKHNRIKGIPKLDDAN 398
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG +NS +CTLILTEGDSAK+LAVSGLGVVGRD+YGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 399 DAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLRGKILNVREASHKQIMENA 458
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 459 EINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 518
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
R FLEEFITPI+K +K ++E++FYSLPEFEEWK T N +K+KYYK
Sbjct: 519 RHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYK 567
Score = 149 bits (376), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+ ++ GE+PLPM P YKN
Sbjct: 788 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRLLMDGEEPLPMLPSYKN 847
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V++GE+AIL+ +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 848 FKGTIEELAPNQYVISGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 902
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 36/52 (69%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL K R +K EL LKKK+P+DLW +DL A E
Sbjct: 1076 FNYLLDMPLWYLTKEKKDELCKLRKEKEQELETLKKKSPSDLWKEDLAAFIE 1127
>gi|444721790|gb|ELW62503.1| DNA topoisomerase 2-beta [Tupaia chinensis]
Length = 1652
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/655 (54%), Positives = 429/655 (65%), Gaps = 144/655 (21%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 71 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVP 129
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 130 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 189
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 190 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 224
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD
Sbjct: 225 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKD 284
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 285 IVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 344
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 345 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 396
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 397 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 429
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 430 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 489
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 490 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 549
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQ
Sbjct: 550 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQ----------------- 592
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
A+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 593 --------------------ASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 627
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 848 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 907
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 908 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 962
Score = 67.4 bits (163), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Query: 822 QLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTE 881
Q + E + + + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E
Sbjct: 1107 QEKASEEEETQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKGRE 1164
Query: 882 LNILKKKAPTDLWSDDLDALREK-DKI 907
+N LK+K+P+DLW +DL A E+ DK+
Sbjct: 1165 VNDLKRKSPSDLWKEDLAAFVEELDKV 1191
>gi|332847785|ref|XP_003315524.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha [Pan
troglodytes]
Length = 1500
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/649 (54%), Positives = 431/649 (66%), Gaps = 138/649 (21%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 27 RLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIF 85
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+ NNGKG PVV+HK EKM+V ++F
Sbjct: 86 DEILVNAADNKQRDPKMSCIRVTIDPENNLISISNNGKGXPVVQHKIEKMYV--LVF--- 140
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
IFG LLTS Y+D+E +TG
Sbjct: 141 --------------------IFGQLLTSCKYDDDEKNLTG-------------------- 160
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
+ W DNM + E+K + +D ITF PDL+KFKM SLDKD+V L+
Sbjct: 161 -----------RTWMDNMGTLGEMELKPFNGEDSLCITFQPDLSKFKMQSLDKDIVALLV 209
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE G+ +K+I+E VN RWEV
Sbjct: 210 RRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVC 269
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 270 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNK-------------- 315
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 316 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQP 354
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGSTC +PKL+DAN
Sbjct: 355 KSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDAN 414
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG +NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 415 DAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENA 474
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 475 EINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 534
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
R FLEEFITPI+K +K ++E++FYSLPEFEEWK T N +K+KYYK
Sbjct: 535 RHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYK 583
Score = 153 bits (386), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + REIV+NI+R++ GE+PLPM P YKN
Sbjct: 804 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEEPLPMLPSYKN 863
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V++GE+AIL+ +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 864 FKGTIEELAPNQYVISGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 918
Score = 57.4 bits (137), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL + R++K EL+ LK+K+P+DLW +DL E
Sbjct: 1094 FNYLLDMPLWYLTKEKKDELCRLRNEKEQELDTLKRKSPSDLWKEDLATFIE 1145
>gi|326921999|ref|XP_003207240.1| PREDICTED: DNA topoisomerase 2-beta-like, partial [Meleagris
gallopavo]
Length = 1688
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/619 (56%), Positives = 430/619 (69%), Gaps = 76/619 (12%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
S K + KMSVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T
Sbjct: 152 SVNKNDTSKKMSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVT 210
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
+VPGLYKIFDEILVNA DNKQRD M CIKI+++ E+N IS+WNNGKGIPVVEHK EK++
Sbjct: 211 FVPGLYKIFDEILVNAADNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEHKVEKVY 270
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCN 199
VP +IF G LLTSSNY+D+E KVTGGRNGYGAKLCN
Sbjct: 271 VPALIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCN 305
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSL 259
IFS+KF VET+C EYK SFKQ W +NM K + P+IK DD+T ITF PDL+KFKM L
Sbjct: 306 IFSTKFTVETACKEYKHSFKQTWMNNMMKTSEPKIKHFEGDDYTCITFQPDLSKFKMEKL 365
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYE 318
DKD+V L+TRRAYD A S K VKV LNG+KLPV F+ YV LY D+ DE G +K+I+E
Sbjct: 366 DKDIVSLMTRRAYDLAGSCKGVKVMLNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHE 425
Query: 319 NVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCT 378
VN RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 426 VVNERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK----- 480
Query: 379 IIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQ 438
G+++KPFQVKNHIW+F+NCLI NP+FDSQ
Sbjct: 481 ------------------------------AGVSVKPFQVKNHIWVFVNCLIENPSFDSQ 510
Query: 439 TKENMTLQKGSFGSTCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGL----GVVG 494
TKENMTLQ SFGS C ++ K + +C +I + + K A + L V
Sbjct: 511 TKENMTLQPKSFGSKC-----QLSEKFFKAASNCGIIESILNWVKFKAQTQLNKKCSSVK 565
Query: 495 RDKYGVFPLRGKLLNVREATH--KQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGR 552
K P KL + +A + QI+ENAEINN++KI+GLQY K Y E +K+LRYG+
Sbjct: 566 HSKIKGIP---KLDDANDAGNFFMQIMENAEINNIIKIVGLQYKKSYEDPESLKSLRYGK 622
Query: 553 LMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEF 612
+MIMTDQDQDGSHIKGL+INFIHHNWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF
Sbjct: 623 IMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEF 682
Query: 613 EEWKEETTNWHTYKIKYYK 631
+EWK+ N +KIKYYK
Sbjct: 683 DEWKKHMENHKAWKIKYYK 701
Score = 153 bits (387), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 70/115 (60%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVLVNGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 922 RVEPEWYIPIIPMVLVNGAEGIGTGWACKLPNYDTREIVNNVRRMLDGLDPHPMLPNYKN 981
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++VV+GEI ++D + +EITEL V WT YK+ L+ +L+G EK
Sbjct: 982 FKGTIQELGQNQYVVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTEK 1036
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 38/53 (71%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
D++Y+L M+ WSLT E+ EL+K RD K ELN LK+K+ +DLW +DL A E
Sbjct: 1208 DFNYILNMSLWSLTKEKVEELIKHRDSKERELNDLKRKSASDLWKEDLAAFVE 1260
>gi|390335410|ref|XP_003724141.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha-like
[Strongylocentrotus purpuratus]
Length = 1597
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/697 (52%), Positives = 439/697 (62%), Gaps = 153/697 (21%)
Query: 10 PDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRE 69
P Q G G KK+ +SVE+IYQKK+QLEHILLRPDTYIGS EP+T+ MW+++ E
Sbjct: 23 PSPGQPGKGSKGKKR-----LSVERIYQKKTQLEHILLRPDTYIGSTEPLTQAMWVIDGE 77
Query: 70 TNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIP 129
T + REIT+VPGLYKIFDEILVNA DNKQRDP MNCIKIT++ E NTISVWNNGKGIP
Sbjct: 78 T--LVNREITFVPGLYKIFDEILVNAADNKQRDPNMNCIKITIDSENNTISVWNNGKGIP 135
Query: 130 VVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGG 189
VVEHK EKM+VP MIF GHLLTSSNY+D + KVTGG
Sbjct: 136 VVEHKGEKMYVPEMIF-------------------------GHLLTSSNYDDTQKKVTGG 170
Query: 190 RNGYGAKLCNIFSSKFVVETSCSEYKKSFKQ-----------VWKDNMS----------- 227
RNGYGAKLCNIFS KF V T+ +Y K FKQ +WK+ +
Sbjct: 171 RNGYGAKLCNIFSKKFSVSTASKDYGKKFKQQEVLRFYCQQGLWKEIQAGLNGEDEKPTE 230
Query: 228 -----KVTSPEIKSGSK--DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKD 280
+ +PE + G++ F ++ F +K + ++ K +L A D +A T+
Sbjct: 231 ILKHWSLCNPETEEGARFLKMFCRLLFIHQPSK--VVNVVKFFQEL-HHTASDMSAFTR- 286
Query: 281 VKVFLNGEKLPVKNFQDYVKLYTD-RQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVS 339
++ V F+ YV ++ Q ED +P+K+++E VNPRWEV + S++GFQQVS
Sbjct: 287 -------KRHGVTGFKSYVDMFVKCFQPEDREPLKVLHEQVNPRWEVCLCMSEKGFQQVS 339
Query: 340 FVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAK 399
F NSIATTKGGRHVD V D ++ ++IE VKKKNK
Sbjct: 340 FCNSIATTKGGRHVDFVADQVITKLIETVKKKNK-------------------------- 373
Query: 400 TLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC----- 454
GG+ +KPFQ+KNH+ +F+NCLI NPTFDSQTKENMTLQ FGS C
Sbjct: 374 ---------GGVNIKPFQIKNHVMVFVNCLIENPTFDSQTKENMTLQAKKFGSECKLSDK 424
Query: 455 ----------------------------------------VPKLEDANDAGTKNSIDCTL 474
+PKL+DANDAG KNSI CTL
Sbjct: 425 FIKGALTCGIVESIMSWMKFKAQSQLDKKCHSSKHSKLKGIPKLDDANDAGGKNSIKCTL 484
Query: 475 ILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQ 534
ILTEGDSAK+LAVSGLGVVGRD YGVFPLRGKLLNVREA+HKQI+EN EINN++KILGLQ
Sbjct: 485 ILTEGDSAKTLAVSGLGVVGRDHYGVFPLRGKLLNVREASHKQIMENVEINNVIKILGLQ 544
Query: 535 YSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPI 594
Y KY T + +KTLRYG+LMIMTDQDQDGSHIKGL+INFI HNWP LL FLEEFITPI
Sbjct: 545 YKNKYETPDSLKTLRYGKLMIMTDQDQDGSHIKGLLINFIQHNWPNLLHHNFLEEFITPI 604
Query: 595 IKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+K TK +E FYSLPEFEEWK+ET +K+KYYK
Sbjct: 605 VKVTKGKETHPFYSLPEFEEWKDETEGSKAWKVKYYK 641
Score = 152 bits (383), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 71/115 (61%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPE YIPIIPMVLVNG+EGIGTGW TKI N++ RE+ NI+R++ GE+P+PM P YK
Sbjct: 844 RIEPETYIPIIPMVLVNGSEGIGTGWSTKISNYDVREVTANIRRLVAGEEPVPMIPSYKG 903
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +RFVV+GEI+I+D+D +EITEL V WT YK+ L+ +LHG+EK
Sbjct: 904 FKGTIEELEPNRFVVSGEISIIDNDTIEITELPVRTWTQVYKEQVLEPMLHGSEK 958
Score = 72.4 bits (176), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 70/148 (47%), Gaps = 26/148 (17%)
Query: 826 QERQAAEGEDDEAGSQTQEEE------DPDKDYDYLLGMTFWSLTMERKNELLKKRDDKM 879
+E Q GE G T++EE D DY+YLLGM WSLT E+K+ LLK RDDK
Sbjct: 1101 KESQVKAGEQPAGGEDTEDEEAAEATPDSGPDYNYLLGMALWSLTKEKKDALLKNRDDKA 1160
Query: 880 TELNILKKKAPTDLWSDDLDALR-EKDKIHPCPGGNRTRGLAL----------------- 921
EL ILK K T LW +DLD E D++ + + G+ +
Sbjct: 1161 RELEILKGKTATMLWVEDLDMFSAELDRVEAQEKEDASSGVVMAAAKGAKGKAKPRKQKL 1220
Query: 922 --KRQTRYQPSNRVLTSRDEPMVVSSGE 947
K +TR P R + R +P + + E
Sbjct: 1221 LTKEETRPSPMGRRVVPRIDPAMRKAAE 1248
>gi|326427379|gb|EGD72949.1| DNA topoisomerase II, variant [Salpingoeca sp. ATCC 50818]
Length = 1761
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/658 (52%), Positives = 441/658 (67%), Gaps = 117/658 (17%)
Query: 22 KKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYV 81
KK A K +VE+IYQKK+QLEHILLRPDTYIGSVE T+ +++++ E ++R EITYV
Sbjct: 23 KKGADAGK-TVEEIYQKKTQLEHILLRPDTYIGSVESNTKNLFVVDPEAGFVQR-EITYV 80
Query: 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVP 141
PGLYKIFDEI+VNA DNK RDP M+CIK+T+++ ISV+N GKGIPV H E ++VP
Sbjct: 81 PGLYKIFDEIIVNAADNKIRDPTMDCIKVTIDKAKAEISVYNTGKGIPVQVHAKEGVYVP 140
Query: 142 TMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIF 201
+IFGHLLTSSNY +D + KVTGGRNGYGAKLCNIF
Sbjct: 141 ELIFGHLLTSSNY-------------------------DDNQKKVTGGRNGYGAKLCNIF 175
Query: 202 SSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKD-DFTKITFTPDLTKFKMTSL 259
S+KFVVET +E K ++QV++DNM+ P I K+ S D DFT+ITF PDL+KF M+ L
Sbjct: 176 STKFVVETCDTETGKKYRQVFRDNMAIKEDPVIVKTKSSDKDFTRITFRPDLSKFHMSEL 235
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYEN 319
D D++ L+ RR YD A +T+ +KV+LN E+LPV++F+DYV L Q+ D K+++E
Sbjct: 236 DDDIIALMARRVYDVAGTTRGIKVYLNNERLPVRHFKDYVNLVLRDQNVD---TKVVHEV 292
Query: 320 VNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTI 379
VN RWEV + S+ GFQQ+SFVNSIATTKGG HV+ V D IV ++ +K+KNK
Sbjct: 293 VNDRWEVCMTLSENGFQQMSFVNSIATTKGGTHVNYVADQIVSGLLSTIKRKNK------ 346
Query: 380 IMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQT 439
G A+KP QVKNH+W+FINCLI NP+FDSQT
Sbjct: 347 ------------------------------GAAVKPHQVKNHMWLFINCLIENPSFDSQT 376
Query: 440 KENMTLQKGSFGS---------------------------------------------TC 454
KENMT + FGS +
Sbjct: 377 KENMTRRSKDFGSNPVLSDKFLKNIKDTGIVDAVLNWAKLKSQAQLSKASSGSKKCKISG 436
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+PKL+DAN+AG +NS CTLILTEGDSAK+LAVSGLGV+GRD YGVFPLRGKLLNVREA+
Sbjct: 437 IPKLDDANEAGGRNSSKCTLILTEGDSAKALAVSGLGVLGRDYYGVFPLRGKLLNVREAS 496
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
HKQI++NAE+ N+ KI+GL++ +YTT K LRYGRLMIMTDQDQDGSHIKGL+INFI
Sbjct: 497 HKQIMDNAEVKNIAKIMGLKFGHEYTTT---KQLRYGRLMIMTDQDQDGSHIKGLLINFI 553
Query: 575 HHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
HH WP+LL++P FL EF+TPI+K TK ++E+SF+++P++E W E+ N ++IKYYK
Sbjct: 554 HHFWPSLLKMPDFLVEFVTPIVKCTKGKQEVSFFTIPQYETWAEQQGNLKGWRIKYYK 611
Score = 122 bits (307), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 75/107 (70%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE+Y PI+PMVLVNG++GIGTGW + +PN+NPR++V+ + MI G++P + PWY F
Sbjct: 821 IEPEFYAPILPMVLVNGSDGIGTGWSSSVPNYNPRDLVNALIAMIEGQEPDELHPWYAGF 880
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
GEI G ++ V G + LD+ +EI+EL + WT YK+ L+ L
Sbjct: 881 TGEITPKGKDKYAVRGTLKKLDETTIEISELPIRTWTQPYKEFLEGL 927
Score = 63.2 bits (152), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 834 EDDEAGSQTQEEED-----PDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKK 888
+DD AG+ +ED D+DYLL M W+LTMER ++L ++R+ ELN L +K
Sbjct: 1085 DDDAAGAPPSSDEDEALEESASDFDYLLSMPMWNLTMERVDKLTEERNGTEAELNALLEK 1144
Query: 889 APTDLWSDDLDAL 901
P DLW +DL A
Sbjct: 1145 TPQDLWKEDLTAF 1157
>gi|326427380|gb|EGD72950.1| DNA topoisomerase II [Salpingoeca sp. ATCC 50818]
Length = 1795
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/658 (52%), Positives = 441/658 (67%), Gaps = 117/658 (17%)
Query: 22 KKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYV 81
KK A K +VE+IYQKK+QLEHILLRPDTYIGSVE T+ +++++ E ++R EITYV
Sbjct: 57 KKGADAGK-TVEEIYQKKTQLEHILLRPDTYIGSVESNTKNLFVVDPEAGFVQR-EITYV 114
Query: 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVP 141
PGLYKIFDEI+VNA DNK RDP M+CIK+T+++ ISV+N GKGIPV H E ++VP
Sbjct: 115 PGLYKIFDEIIVNAADNKIRDPTMDCIKVTIDKAKAEISVYNTGKGIPVQVHAKEGVYVP 174
Query: 142 TMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIF 201
+IFGHLLTSSNY +D + KVTGGRNGYGAKLCNIF
Sbjct: 175 ELIFGHLLTSSNY-------------------------DDNQKKVTGGRNGYGAKLCNIF 209
Query: 202 SSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKD-DFTKITFTPDLTKFKMTSL 259
S+KFVVET +E K ++QV++DNM+ P I K+ S D DFT+ITF PDL+KF M+ L
Sbjct: 210 STKFVVETCDTETGKKYRQVFRDNMAIKEDPVIVKTKSSDKDFTRITFRPDLSKFHMSEL 269
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYEN 319
D D++ L+ RR YD A +T+ +KV+LN E+LPV++F+DYV L Q+ D K+++E
Sbjct: 270 DDDIIALMARRVYDVAGTTRGIKVYLNNERLPVRHFKDYVNLVLRDQNVD---TKVVHEV 326
Query: 320 VNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTI 379
VN RWEV + S+ GFQQ+SFVNSIATTKGG HV+ V D IV ++ +K+KNK
Sbjct: 327 VNDRWEVCMTLSENGFQQMSFVNSIATTKGGTHVNYVADQIVSGLLSTIKRKNK------ 380
Query: 380 IMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQT 439
G A+KP QVKNH+W+FINCLI NP+FDSQT
Sbjct: 381 ------------------------------GAAVKPHQVKNHMWLFINCLIENPSFDSQT 410
Query: 440 KENMTLQKGSFGS---------------------------------------------TC 454
KENMT + FGS +
Sbjct: 411 KENMTRRSKDFGSNPVLSDKFLKNIKDTGIVDAVLNWAKLKSQAQLSKASSGSKKCKISG 470
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+PKL+DAN+AG +NS CTLILTEGDSAK+LAVSGLGV+GRD YGVFPLRGKLLNVREA+
Sbjct: 471 IPKLDDANEAGGRNSSKCTLILTEGDSAKALAVSGLGVLGRDYYGVFPLRGKLLNVREAS 530
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
HKQI++NAE+ N+ KI+GL++ +YTT K LRYGRLMIMTDQDQDGSHIKGL+INFI
Sbjct: 531 HKQIMDNAEVKNIAKIMGLKFGHEYTTT---KQLRYGRLMIMTDQDQDGSHIKGLLINFI 587
Query: 575 HHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
HH WP+LL++P FL EF+TPI+K TK ++E+SF+++P++E W E+ N ++IKYYK
Sbjct: 588 HHFWPSLLKMPDFLVEFVTPIVKCTKGKQEVSFFTIPQYETWAEQQGNLKGWRIKYYK 645
Score = 122 bits (307), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 75/107 (70%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE+Y PI+PMVLVNG++GIGTGW + +PN+NPR++V+ + MI G++P + PWY F
Sbjct: 855 IEPEFYAPILPMVLVNGSDGIGTGWSSSVPNYNPRDLVNALIAMIEGQEPDELHPWYAGF 914
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
GEI G ++ V G + LD+ +EI+EL + WT YK+ L+ L
Sbjct: 915 TGEITPKGKDKYAVRGTLKKLDETTIEISELPIRTWTQPYKEFLEGL 961
Score = 63.2 bits (152), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 834 EDDEAGSQTQEEED-----PDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKK 888
+DD AG+ +ED D+DYLL M W+LTMER ++L ++R+ ELN L +K
Sbjct: 1119 DDDAAGAPPSSDEDEALEESASDFDYLLSMPMWNLTMERVDKLTEERNGTEAELNALLEK 1178
Query: 889 APTDLWSDDLDAL 901
P DLW +DL A
Sbjct: 1179 TPQDLWKEDLTAF 1191
>gi|308510362|ref|XP_003117364.1| CRE-TOP-2 protein [Caenorhabditis remanei]
gi|308242278|gb|EFO86230.1| CRE-TOP-2 protein [Caenorhabditis remanei]
Length = 1547
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/654 (52%), Positives = 422/654 (64%), Gaps = 120/654 (18%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
KK + KM++E IYQKKSQLEHILLRPDTYIGSVE +T ++ + I +P
Sbjct: 54 KKGGSKKMAIEDIYQKKSQLEHILLRPDTYIGSVEYTEKT-------PIRLKSKRIK-IP 105
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
LY+ ++ N ISV+NNGKGIPV HK EK++VP
Sbjct: 106 YLYRF--------------------------RKNNRISVYNNGKGIPVTLHKVEKVYVPE 139
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNYND+E KVTGGRNGYGAKLCNIFS
Sbjct: 140 LIF-------------------------GTLLTSSNYNDDEKKVTGGRNGYGAKLCNIFS 174
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF +ETS ++K FKQ W NM++ P+IK +DFT+ITF PDL+KFKM LD D
Sbjct: 175 TKFTLETSSKDFKSQFKQTWVKNMTREKEPDIKKSDSEDFTRITFQPDLSKFKMDELDDD 234
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNP 322
+ L+ RRAYD A STK V VFLNGE++PVK F+DYVK+YT + DG+P+K+ YE V
Sbjct: 235 ICHLMARRAYDVAGSTKGVTVFLNGERVPVKGFEDYVKMYTSQFTNDGEPIKVAYEQVGD 294
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RW+VA+A S++GFQQVSFVNSIATTKGGRHVD V D +V + I+ +K+K I
Sbjct: 295 RWQVALALSEKGFQQVSFVNSIATTKGGRHVDYVADQMVAKFIDSIKRKLSKTAMNI--- 351
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
K + N L + T I I FQ+KNH+W+F+N LI NPTFDSQTKE
Sbjct: 352 ---KPFQIDPNSLNSSNTSICIH----------FQIKNHMWVFVNALIENPTFDSQTKET 398
Query: 443 MTLQKGSFGSTC---------------------------------------------VPK 457
MTLQ FGSTC +PK
Sbjct: 399 MTLQSKQFGSTCTLSEKFSKAAGNVGITDAVMSWVRFKQMDDLNKKCSKTKTSKLKGIPK 458
Query: 458 LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQ 517
LEDANDAGTKNS CTLILTEGDSAK+LAVSGL VVGRDK+GVFPLRGKLLNVR+ KQ
Sbjct: 459 LEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLAVVGRDKFGVFPLRGKLLNVRDGNMKQ 518
Query: 518 ILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHN 577
I +NAEIN ++KILGLQY KKY T +D KTLRYG++M+M DQDQDGSHIKGL+INF+HH
Sbjct: 519 IADNAEINAMIKILGLQYKKKYETEDDFKTLRYGKMMVMADQDQDGSHIKGLVINFVHHF 578
Query: 578 WPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
WP+L++ F+EEFITPI+KA+K +EE+SF+S+PE+ EW+ T NW TYKIKYYK
Sbjct: 579 WPSLIQRNFVEEFITPIVKASKGKEEVSFFSIPEYSEWRMNTDNWKTYKIKYYK 632
Score = 160 bits (404), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/120 (60%), Positives = 89/120 (74%), Gaps = 1/120 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPEWY PIIPMVLVNGA+GIGTGW T IPN+NPR+IV NIKR+I GE + PWYKN
Sbjct: 853 RIEPEWYCPIIPMVLVNGAQGIGTGWSTNIPNYNPRDIVKNIKRLIAGESQKAIAPWYKN 912
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEKDEVHP 777
F+G I SR+ GE+A +DD+ +EITEL V +WT DYK+ L+ LL ++KD+ P
Sbjct: 913 FRGNIIQIDSSRYACYGEVATIDDNTIEITELPVKQWTQDYKEKVLEALLDSSDKDKKAP 972
Score = 58.5 bits (140), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%)
Query: 838 AGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDD 897
A S T+ E DYDYL+GM L+ E KN+LL++ ++KM E+ L+KK DLW DD
Sbjct: 1146 ASSSTKVLETKLSDYDYLVGMALIKLSEEEKNKLLRESEEKMAEVKSLEKKTWQDLWHDD 1205
Query: 898 LD 899
LD
Sbjct: 1206 LD 1207
>gi|296476435|tpg|DAA18550.1| TPA: topoisomerase (DNA) II alpha 170kDa [Bos taurus]
Length = 1338
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/570 (58%), Positives = 394/570 (69%), Gaps = 106/570 (18%)
Query: 108 IKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPT 167
I+ + +E N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 70 IQSSFLRENNLISIWNNGKGIPVVEHKVEKMYVPALIF---------------------- 107
Query: 168 MIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMS 227
G LLTSSNY+DEE KVTGGRNGYGAKLCNIFS+KF VET+ EYKK FKQ W DNM
Sbjct: 108 ---GQLLTSSNYDDEEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMG 164
Query: 228 KVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNG 287
K E+K S +D+T ITF PDL+KFKM SLDKD+V L+ RRAYD A STKDVKV+LNG
Sbjct: 165 KAGEMELKPFSGEDYTCITFHPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVYLNG 224
Query: 288 EKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIAT 346
+LPVK F+ YV LY D+ DE G+P+K+I+E VN RWEV + S++GFQQ+SFVNSIAT
Sbjct: 225 NRLPVKGFRSYVDLYLKDKVDETGNPLKVIHEQVNHRWEVCLTMSEKGFQQISFVNSIAT 284
Query: 347 TKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGV 406
+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 285 SKGGRHVDYVADQIVTKLVDVVKKKNK--------------------------------- 311
Query: 407 RLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC------------ 454
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ SFGSTC
Sbjct: 312 --GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQVKSFGSTCQLSEKFIKAAIG 369
Query: 455 ---------------------------------VPKLEDANDAGTKNSIDCTLILTEGDS 481
+PKL+DANDAG +NS +CTLILTEGDS
Sbjct: 370 CGIVESILNWVKFKAQIQLNKKCSAVKHNRIKGIPKLDDANDAGGRNSTECTLILTEGDS 429
Query: 482 AKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTT 541
AK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENAEINN++KI+GLQY K Y
Sbjct: 430 AKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYED 489
Query: 542 VEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAR 601
+ +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LLR FLEEFITPI+K +K +
Sbjct: 490 EDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNK 549
Query: 602 EELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+E++FYSLPEFEEWK T N +K+KYYK
Sbjct: 550 QEMAFYSLPEFEEWKSSTPNHKKWKVKYYK 579
Score = 151 bits (382), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 800 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLMDGEEPLPMLPSYKN 859
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG ++ +++V++GE+AIL+ +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 860 FKGTVEELAPNQYVISGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 914
Score = 61.2 bits (147), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCP 911
++YLL M W LT E+K+EL K R++K EL LK+K+P+DLW +DL A E+ +
Sbjct: 1090 FNYLLDMPLWYLTKEKKDELCKLRNEKEQELETLKRKSPSDLWKEDLAAFVEELESENTE 1149
Query: 912 GGNRTRGLALKRQ 924
G + G+ ++ Q
Sbjct: 1150 GSPQEDGMEMESQ 1162
>gi|33636521|gb|AAQ23558.1| RE49802p [Drosophila melanogaster]
Length = 1157
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/512 (63%), Positives = 371/512 (72%), Gaps = 80/512 (15%)
Query: 165 VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKD 224
VPTMIFGHLLTSSNYND+E KVTGGRNGYGAKLCNIFS+ F VET+ EYKKSFKQ W +
Sbjct: 3 VPTMIFGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTSFTVETATREYKKSFKQTWGN 62
Query: 225 NMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVF 284
NM K + +IK + D+T+ITF+PDL KFKM LD+D+V L++RRAYD AAS+K V VF
Sbjct: 63 NMGKASDVQIKDFNGTDYTRITFSPDLAKFKMDRLDEDIVALMSRRAYDVAASSKGVSVF 122
Query: 285 LNGEKLPVKNFQDYVKLYTDRQDED-GDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNS 343
LNG KL V+NF+DY+ L+ D+D G P+KI++E N RWEVA PSDRGFQQVSFVNS
Sbjct: 123 LNGNKLGVRNFKDYIDLHIKNTDDDSGPPIKIVHEVANERWEVACCPSDRGFQQVSFVNS 182
Query: 344 IATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLID 403
IAT KGGRHVD VVD ++KQ++EV+KKKNK
Sbjct: 183 IATYKGGRHVDHVVDNLIKQLLEVLKKKNK------------------------------ 212
Query: 404 IGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC--------- 454
GG+ +KPFQV+NH+W+F+NCLI NPTFDSQTKENMTLQ+ FGS C
Sbjct: 213 -----GGINIKPFQVRNHLWVFVNCLIENPTFDSQTKENMTLQQKGFGSKCTLSEKFINN 267
Query: 455 -----------------------------------VPKLEDANDAGTKNSIDCTLILTEG 479
+PKLEDAN+AG KNSI CTLILTEG
Sbjct: 268 MSKSGIVESVLAWAKFKAQNDIAKTGGRKSSKIKGIPKLEDANEAGGKNSIKCTLILTEG 327
Query: 480 DSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKY 539
DSAKSLAVSGLGV+GRD YGVFPLRGKLLNVREA KQ+ ENAEINNL KI+GLQY KKY
Sbjct: 328 DSAKSLAVSGLGVIGRDLYGVFPLRGKLLNVREANFKQLSENAEINNLCKIIGLQYKKKY 387
Query: 540 TTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATK 599
T +D+KTLRYG++MIMTDQDQDGSHIKGL+INFIH NWP LLRLPFLEEFITPI+KATK
Sbjct: 388 LTEDDLKTLRYGKVMIMTDQDQDGSHIKGLLINFIHTNWPELLRLPFLEEFITPIVKATK 447
Query: 600 AREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
EELSFYSLPEFEEWK +T N HTY IKYYK
Sbjct: 448 KNEELSFYSLPEFEEWKNDTANHHTYNIKYYK 479
Score = 154 bits (388), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 88/115 (76%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP WY+PIIPMVLVNGAEGIGTGW TKI N+NPREI+ N+++MI G++P M PWYKN
Sbjct: 700 KIEPLWYLPIIPMVLVNGAEGIGTGWSTKISNYNPREIMKNLRKMINGQEPSVMHPWYKN 759
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYK-DTLDTLLHGAEK 772
F G ++Y D R++ G I IL ++LEI+EL VG WT +YK + L+ L +G EK
Sbjct: 760 FLGRMEYVSDGRYIQTGNIQILSGNRLEISELPVGVWTQNYKENVLEPLSNGTEK 814
Score = 75.1 bits (183), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 50/74 (67%), Gaps = 9/74 (12%)
Query: 840 SQTQEEEDPDK---------DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAP 890
++ ++E DP+K +DYLLGM+ W LT E+KNELLK+RD K++EL L+KK P
Sbjct: 987 AKKEKEVDPEKAFKKLTDVKKFDYLLGMSMWMLTEEKKNELLKQRDTKLSELESLRKKTP 1046
Query: 891 TDLWSDDLDALREK 904
LW DDLDAL K
Sbjct: 1047 EMLWLDDLDALESK 1060
>gi|417413864|gb|JAA53242.1| Putative dna topoisomerase type ii, partial [Desmodus rotundus]
Length = 1494
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/563 (58%), Positives = 389/563 (69%), Gaps = 106/563 (18%)
Query: 115 ETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLL 174
E+N IS+WNNGKGIPVVEHK EK++VP +IF G LL
Sbjct: 1 ESNIISIWNNGKGIPVVEHKVEKVYVPALIF-------------------------GQLL 35
Query: 175 TSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI 234
TSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VET+C EYK SFKQ W +NM K + +I
Sbjct: 36 TSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKI 95
Query: 235 KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKN 294
K +D+T ITF PDL+KFKM LDKD+V L+TRRAYD A S K VKV NG+KLPV
Sbjct: 96 KHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCKGVKVMFNGKKLPVNG 155
Query: 295 FQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHV 353
F+ YV LY D+ DE G +K+I+E N RW+V + S++GFQQ+SFVNSIATTKGGRHV
Sbjct: 156 FRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQISFVNSIATTKGGRHV 215
Query: 354 DAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMAL 413
D VVD +V ++IEVVKKKNK G+++
Sbjct: 216 DYVVDQVVGKLIEVVKKKNK-----------------------------------AGVSV 240
Query: 414 KPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC------------------- 454
KPFQVKNHIW+FINCLI NPTFDSQTKENMTLQ SFGS C
Sbjct: 241 KPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFKAASNCGIVESI 300
Query: 455 --------------------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVS 488
+PKL+DANDAG K+S++CTLILTEGDSAKSLAVS
Sbjct: 301 LNWVKFKAQTQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVS 360
Query: 489 GLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTL 548
GLGV+GRD+YGVFPLRGK+LNVREA+HKQI+ENAEINN++KI+GLQY K Y E +KTL
Sbjct: 361 GLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTL 420
Query: 549 RYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYS 608
RYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL+ FLEEFITPI+KA+K ++ELSFYS
Sbjct: 421 RYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYS 480
Query: 609 LPEFEEWKEETTNWHTYKIKYYK 631
+PEF+EWK+ N +KIKYYK
Sbjct: 481 IPEFDEWKKHIENQKAWKIKYYK 503
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 724 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 783
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 784 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 838
Score = 66.6 bits (161), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
Query: 831 AEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAP 890
++ + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E+N LK+K+P
Sbjct: 992 SQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDSKGREVNDLKRKSP 1049
Query: 891 TDLWSDDLDALREK-DKIHPCPGGNRTRGLALK 922
+DLW +DL A E+ DK+ + G+A K
Sbjct: 1050 SDLWKEDLAAFVEELDKVEAQEREDIMAGMAGK 1082
>gi|303388894|ref|XP_003072680.1| DNA topoisomerase II [Encephalitozoon intestinalis ATCC 50506]
gi|303301822|gb|ADM11320.1| DNA topoisomerase II [Encephalitozoon intestinalis ATCC 50506]
Length = 1141
Score = 636 bits (1641), Expect = e-179, Method: Compositional matrix adjust.
Identities = 329/647 (50%), Positives = 427/647 (65%), Gaps = 119/647 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E+ YQKK+ +EHILLRPD+YIGSVE + M++ + + + M + I YVPGLYKIFDE
Sbjct: 3 TIEETYQKKTPVEHILLRPDSYIGSVEKEMQQMYVWDEDNSKMVFKNIEYVPGLYKIFDE 62
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
I+VNA DNK RDPKMN IK++++ E N ISV+NNG+GIPV HK+E ++VP +IF
Sbjct: 63 IIVNAADNKIRDPKMNVIKVSIDPEKNEISVYNNGRGIPVRIHKEENVYVPELIF----- 117
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
G+LLTSSNYND+E KVTGGRNGYGAKLCNIFS +F+VET+
Sbjct: 118 --------------------GNLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSKEFIVETA 157
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
E KK +KQ ++DNM PEI +K+DFT+ITF PDL +FKM LD D V L+ +R
Sbjct: 158 DCEVKKYYKQRYRDNMGIKEEPEISRYTKEDFTRITFKPDLRRFKMNKLDDDTVSLLKKR 217
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAP 330
YD KDVK+FLN +K+PVK F++YVKLY V I+++ +N RWE+A+
Sbjct: 218 VYDLGGIVKDVKIFLNEKKIPVKGFKEYVKLYIP------SGVNIVHQVINDRWELALTT 271
Query: 331 SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNV 390
S+ FQQVSFVN+I T+KGG HV+ VV+ IV ++E ++KK K
Sbjct: 272 SEEQFQQVSFVNAICTSKGGSHVNHVVERIVDPLLEAIQKKEK----------------- 314
Query: 391 KNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSF 450
G++++PFQ+K+ ++IF+NCLI NP FDSQTKEN+TL+ +F
Sbjct: 315 -------------------GLSVRPFQIKSCMFIFVNCLIENPAFDSQTKENLTLRVSAF 355
Query: 451 GSTC---------------------------------------------VPKLEDANDAG 465
GS C +PKLEDAN AG
Sbjct: 356 GSKCEPISDFVKNVIKNTSLVQKVTSFAKARQSQQLKKTDGAKTSRLSGIPKLEDANFAG 415
Query: 466 TKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEIN 525
T S DCTLILTEGDSAK+LAVSGL VVGRD YGVFPLRGKLLNVREA+HKQI++NAEI+
Sbjct: 416 TSKSKDCTLILTEGDSAKTLAVSGLSVVGRDIYGVFPLRGKLLNVREASHKQIMDNAEIS 475
Query: 526 NLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP 585
N+ KILGLQ++K Y ED+ +LRYG +MIMTDQD DGSHIKGLIINF+ H +P+LL++P
Sbjct: 476 NIKKILGLQHNKIY---EDVSSLRYGHIMIMTDQDHDGSHIKGLIINFLDHFYPSLLKIP 532
Query: 586 -FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL+EFITPI++A+K E F++LPE+EE+K+ + W+ IKYYK
Sbjct: 533 GFLQEFITPIVRASKKGEVKDFFTLPEYEEFKKNSDGWN---IKYYK 576
Score = 163 bits (412), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 156/299 (52%), Gaps = 59/299 (19%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE+Y+PIIPMVLVNGAEGIGTGW T IPN NP ++V+NI+R+IRGEDP+ M P+Y+NF
Sbjct: 786 IEPEFYVPIIPMVLVNGAEGIGTGWSTSIPNFNPVDVVENIRRLIRGEDPVEMIPYYRNF 845
Query: 720 KGEIDYCGDSRFVVNGEIAILDDD-KLEITELQVGKWTTDYKDTLDTLLH-GAEKD--EV 775
+G I+ G+ ++ V+G I + D LEI+EL VG WT +YK+ L++L+ G KD E
Sbjct: 846 RGTIEKVGEGKYQVSG---IYEGDMDLEISELPVGTWTLNYKEFLESLVQAGVVKDFKEY 902
Query: 776 HP-----------------------------------GPGRKSHPRPIAPKSYKID---- 796
H G + S P+ I + Y +
Sbjct: 903 HTEKTVSFSVKLSKSISNLKLSTTITINNMVCFDENLGIKKYSTPQEILKEFYDVRLRYY 962
Query: 797 -------DDSEEEEIEEVFHDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPD 849
+EE+ ++ + K TG + + R+ D E+ + +
Sbjct: 963 SIRKENMLKVMKEELVKLENKVRFIKEVSTGELVISRRRKGEVIFDLESRRYARVD---- 1018
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL-REKDKI 907
DY+YLL M+ SLT+ER +L + K+ E N L+ K P +LW DDL+ RE KI
Sbjct: 1019 -DYEYLLSMSILSLTVERIEKLNNEHAKKLEEYNKLESKTPKELWLDDLEVFEREYLKI 1076
>gi|397643397|gb|EJK75837.1| hypothetical protein THAOC_02435 [Thalassiosira oceanica]
Length = 1391
Score = 634 bits (1635), Expect = e-178, Method: Compositional matrix adjust.
Identities = 337/690 (48%), Positives = 436/690 (63%), Gaps = 132/690 (19%)
Query: 2 SSDESDFDPDVQQNGNGPSPKKKTPANKM-SVEKIYQKKSQLEHILLRPDTYIGSVEPIT 60
S D+ +++P Q+ P K K ++E+ YQKK+QLEHILLRPDTYIGSVE +T
Sbjct: 15 SVDDENYNP--QKTAVAAKPSKAASKGKTKTIEETYQKKTQLEHILLRPDTYIGSVEQLT 72
Query: 61 ETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTIS 120
+ M+++N ET+ + ++EI++ PGLYKIFDEILVNA DNKQRDP M+ +++ ++ ETNTIS
Sbjct: 73 QPMFILNSETDRIVQKEISFTPGLYKIFDEILVNAADNKQRDPNMDRLEVEIDAETNTIS 132
Query: 121 VWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYN 180
V NNGKGIPVVEHK+ +VPT+IFGHLLT SN+ +
Sbjct: 133 VKNNGKGIPVVEHKEHNCYVPTLIFGHLLTGSNF-------------------------D 167
Query: 181 DEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGS-- 238
D+E K TGGRNGYGAKL NIFS++F VE SE +K F Q ++DNM +P+IK +
Sbjct: 168 DDEKKTTGGRNGYGAKLANIFSTEFTVECLDSENEKKFSQTFRDNMHTAETPKIKKATKA 227
Query: 239 ---KDDFTKITFTPDLTKFKMTS-LDKDMVDLITRRAYDAAAST-----KDVKVFLNGEK 289
K D+TKITF PDL +F M LD D L+++RAYD A S K + VFLNG+K
Sbjct: 228 EIKKGDYTKITFQPDLKRFNMNGQLDSDTTGLLSKRAYDIAGSMSMKGGKKLSVFLNGKK 287
Query: 290 LPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKG 349
LP+K+F+ Y+ L+ + Q D +E VN +WEV + SD FQQ+SFVN+IATTKG
Sbjct: 288 LPIKDFKSYIALFDNIQKPDA------FEKVNDQWEVGVGVSDGSFQQISFVNAIATTKG 341
Query: 350 GRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLG 409
G HV+ + D + K++ VKKKNK G
Sbjct: 342 GGHVNYIADQVAKKLQAAVKKKNK-----------------------------------G 366
Query: 410 GMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS----------------- 452
G +KP Q+KNH+ +F+NCL+ NPTFDSQTKENMT + +F S
Sbjct: 367 GTEIKPNQIKNHLAVFVNCLVENPTFDSQTKENMTKKPSTFSSVKLSDKFIKAVEKSGVV 426
Query: 453 --------------------------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLA 486
T + KL+DAN+AGT S DCTLI+TEGDSAKSLA
Sbjct: 427 DSIMQFAKFKANQALKRKGGTKKTKLTGITKLDDANNAGTAKSKDCTLIITEGDSAKSLA 486
Query: 487 VSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMK 546
VSGL VVGRD YGVFPL+GK LNVR+ATH QI++N EI NLV+I+GL++ Y+ E++K
Sbjct: 487 VSGLSVVGRDFYGVFPLKGKPLNVRDATHAQIMKNEEIMNLVEIMGLKFGTTYSE-ENIK 545
Query: 547 TLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELS 605
+LRYG LMIM DQD DGSHIKGL+INFIHH WP+LL +P FL++FITPI+K TK ++ +
Sbjct: 546 SLRYGHLMIMADQDHDGSHIKGLVINFIHHFWPSLLDVPGFLQQFITPIVKCTKGKKSET 605
Query: 606 FYSLPEFEEWKEETTN----WHTYKIKYYK 631
F++LPE+EEWKE T N W T KYYK
Sbjct: 606 FFTLPEYEEWKEGTGNDAKGWTT---KYYK 632
Score = 127 bits (318), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 80/116 (68%), Gaps = 3/116 (2%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE+Y+P+IP+VLVNG++GIGTGW T I NH+PRE++ N+++MI G++P M P + +
Sbjct: 857 IEPEYYMPVIPLVLVNGSDGIGTGWSTTIQNHDPREVISNLRKMIHGDEPEMMHPHFYGY 916
Query: 720 KGEIDYCGDSR---FVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
GEI R ++V G+I D L ITEL +GKWT DYK L+ L+ G +K
Sbjct: 917 TGEITAETGKRQGSYIVRGKIERTSDTTLLITELPIGKWTQDYKGFLEGLMSGTDK 972
Score = 60.8 bits (146), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 841 QTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDA 900
++ + D K ++YLLGM WSLT ER EL ++R +K E++ L +P LWS+DLDA
Sbjct: 1130 ESASDADLAKGFEYLLGMKIWSLTHERAEELRRQRAEKADEVDELNATSPEQLWSNDLDA 1189
Query: 901 LRE 903
+ E
Sbjct: 1190 IDE 1192
>gi|224007445|ref|XP_002292682.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
gi|220971544|gb|EED89878.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
Length = 1230
Score = 634 bits (1634), Expect = e-178, Method: Compositional matrix adjust.
Identities = 335/659 (50%), Positives = 422/659 (64%), Gaps = 129/659 (19%)
Query: 32 VEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEI 91
+E+ YQKK+QLEHILLRPDTYIGS EP+T+ M+++N ETN + +R++TY PGLYKIFDEI
Sbjct: 41 IEETYQKKTQLEHILLRPDTYIGSTEPLTQPMFVLNAETNRIAQRDVTYTPGLYKIFDEI 100
Query: 92 LVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTS 151
+VNA DNKQRDP M+ +++TV+ E+ TISV NNGKGIPVV HK+ +VPT+I
Sbjct: 101 VVNAADNKQRDPNMDRMEVTVDAESGTISVLNNGKGIPVVMHKEHNCYVPTLI------- 153
Query: 152 SNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSC 211
FGHLLT SN++D+E K TGGRNGYGAKL NIFS++F+VE
Sbjct: 154 ------------------FGHLLTGSNFDDDEKKTTGGRNGYGAKLANIFSTEFIVECVD 195
Query: 212 SEYKKSFKQVWKDNM--------SKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDM 263
S FKQV+++NM K T+ E+K G D+TKITF PDL +F MTSLD D
Sbjct: 196 SNEGMKFKQVFRNNMHVKEDPKVKKCTAAELKKG---DYTKITFKPDLNRFNMTSLDTDT 252
Query: 264 VDLITRRAYDAAAST-----KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYE 318
V L+++RAYD A S K + V+LNG+KLPVK+F+ Y+ L+ DG YE
Sbjct: 253 VGLLSKRAYDIAGSMANKEGKKLSVYLNGKKLPVKDFKSYLALF------DGITPPAAYE 306
Query: 319 NVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCT 378
V RWEV I+ SD FQQ+SFVN+IATTKGG HV+ + D + K + VKKKNK
Sbjct: 307 KVGDRWEVGISVSDGSFQQISFVNAIATTKGGGHVNYIADQVAKSLQASVKKKNK----- 361
Query: 379 IIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQ 438
GG +KP Q+KNH+ +F+NCL+ NPTFDSQ
Sbjct: 362 ------------------------------GGTEIKPNQIKNHLSVFVNCLVENPTFDSQ 391
Query: 439 TKENMTLQKGSFGS--------------------------------------------TC 454
TKEN+T + +FG T
Sbjct: 392 TKENLTTRPSAFGKEGQLSDKFMKQVEKCGVVDAIMSYAKFKQNQALKRKGGTKKTKLTG 451
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+ KL+DAN+AGT S DCTLI+TEGDSAKSLAVSGL VVGRD YGVFPL+GK LNVR+AT
Sbjct: 452 ITKLDDANNAGTAKSKDCTLIITEGDSAKSLAVSGLSVVGRDFYGVFPLKGKPLNVRDAT 511
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
H QI++N EI NLV+I+GL++ YT E++K+LRYG LMIM DQD DGSHIKGLIINFI
Sbjct: 512 HSQIMKNEEIMNLVEIMGLKFGTTYTE-ENIKSLRYGHLMIMADQDHDGSHIKGLIINFI 570
Query: 575 HHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN-WHTYKIKYYK 631
HH WP+LL +P FL +FITPI+K TK ++ +F++LPE+EEWKE T N + IKYYK
Sbjct: 571 HHFWPSLLDIPDFLMQFITPIVKCTKGKKSHTFFTLPEYEEWKEGTGNDAKGWTIKYYK 629
Score = 130 bits (328), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 61/116 (52%), Positives = 81/116 (69%), Gaps = 3/116 (2%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE+Y+P+IPMVLVNG++GIGTGW + I NH+PRE++ NIK+MI GE+P M P + +
Sbjct: 842 IEPEYYMPVIPMVLVNGSDGIGTGWSSTIQNHDPREVIANIKKMINGEEPELMHPHFAGY 901
Query: 720 KGEIDYCGDSR---FVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
GEI SR ++V G+I D L ITEL +GKWT DYK L+ L+ G +K
Sbjct: 902 TGEITAESGSREGSYIVEGKIERTGDTTLLITELPIGKWTQDYKGFLEGLMIGTDK 957
Score = 60.8 bits (146), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Query: 813 LAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPD--KDYDYLLGMTFWSLTMERKNE 870
LA Q G L +E + +E E+++ S ++ D + K Y+YLLGM WSLT ER E
Sbjct: 1084 LADLQLRGYDLYPREVKKSETEEEDDTSVEEDASDAELAKGYEYLLGMKIWSLTFERAEE 1143
Query: 871 LLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCPGGNRTRGLALKRQTRYQPS 930
L +++ +K E+ L+ +P +W DL+A+ E + LKR+ + Q
Sbjct: 1144 LRRQKAEKADEVEKLEGTSPEAIWMTDLEAIEE-----ALDERDVELNAELKREVQAQSK 1198
Query: 931 NRV 933
N+V
Sbjct: 1199 NKV 1201
>gi|452825658|gb|EME32653.1| DNA topoisomerase II [Galdieria sulphuraria]
Length = 1396
Score = 632 bits (1630), Expect = e-178, Method: Compositional matrix adjust.
Identities = 328/649 (50%), Positives = 415/649 (63%), Gaps = 115/649 (17%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+VE YQK + EH+LLRPDTYIGSVE T+T+W+ +R+ M RE+++VP LYKIFDE
Sbjct: 9 TVEDTYQKLTPREHVLLRPDTYIGSVERTTQTLWVYDRKDQRMSFREVSFVPALYKIFDE 68
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA D+KQRDP MN I++ +++E N IS++NNGKGIPV HK E ++VP MIFGHLLT
Sbjct: 69 ILVNAADHKQRDPSMNTIRVDIHKEDNKISIYNNGKGIPVEIHKKENIYVPEMIFGHLLT 128
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
SSNY +D E KV GGRNGYGAKL NIFS F+VET+
Sbjct: 129 SSNY-------------------------DDSEKKVVGGRNGYGAKLTNIFSKSFIVETA 163
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
S+ +++Q + +NMS P+I S KDD+TKITF PDL KF MT LD+D++ L +R
Sbjct: 164 DSQRGLTYRQEFSNNMSSRKDPKIMSNKKDDWTKITFVPDLEKFSMTHLDEDILALFQKR 223
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVAIA 329
+D A VKV+ NGE LP+K+F+DY +LY D+ D V IYE RWEV ++
Sbjct: 224 VFDVAGCNPTVKVYFNGEHLPIKSFRDYCELYLIDKAD-----VPRIYECNGSRWEVMLS 278
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
S+ F QVSFVNSI T KGG HV+ +VD I+ ++ E ++KK+K
Sbjct: 279 VSEGQFTQVSFVNSIWTMKGGTHVNHIVDQIISKVNEHIEKKHK---------------- 322
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G+ LKPFQ+KNH+W+F+ CLI NP FDSQTKENMT + +
Sbjct: 323 --------------------GLKLKPFQIKNHLWVFVKCLIENPAFDSQTKENMTSRPNT 362
Query: 450 FGSTC--------------------------------------------VPKLEDANDAG 465
FGS+C +PKL+DAN AG
Sbjct: 363 FGSSCPLSEEFMKKVMKSSILENVLSFAKMKQTSELKKTDGGKAKKILGIPKLDDANYAG 422
Query: 466 TKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEIN 525
TK S CTLILTEGDSAK+LAVSGL VVGRD YGVFPLRGKLLNVREA+HKQI+ENAEIN
Sbjct: 423 TKESFYCTLILTEGDSAKALAVSGLSVVGRDYYGVFPLRGKLLNVREASHKQIMENAEIN 482
Query: 526 NLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP 585
NL KILGLQ+ K Y E +KTLRYG ++IMTDQD DGSHIKGL+INF HH WP+LL +
Sbjct: 483 NLKKILGLQHGKVYDD-ETIKTLRYGHVLIMTDQDNDGSHIKGLLINFFHHFWPSLLEVK 541
Query: 586 -FLEEFITPIIKATKAREELSFYSLPEFEEWKE--ETTNWHTYKIKYYK 631
FL+EFITPI+KA+K + ++F+++PE++ W+ E + IKYYK
Sbjct: 542 GFLQEFITPIVKASKGNQVVTFFTIPEYKTWRTSLEQETLKGWTIKYYK 590
Score = 134 bits (336), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 645 LHKVTSDSISMFIGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMI 704
LH + D +S IEP +Y PIIP+VLVNGAEGIGTGW T +P +NP+++++NI+R+I
Sbjct: 790 LHYLEEDGLS-----IEPNYYCPIIPLVLVNGAEGIGTGWSTNVPCYNPKDVIENIRRLI 844
Query: 705 RGEDPLPMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLD 764
G +P M PWY+ F+G I + G S + + G++ + D + ITEL + WTT YK+ L+
Sbjct: 845 HGHEPHTMHPWYRGFRGSICFSGSSTYDIYGKVYRVRDHLVRITELPLKTWTTPYKEWLE 904
Query: 765 TLLHGAEK 772
+++ +E+
Sbjct: 905 SIMLSSEQ 912
Score = 58.2 bits (139), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 36/52 (69%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
YDYLL M WSLT ER +L ++RD K+ E+ L++ AP+DLW DL+ L +
Sbjct: 1078 YDYLLSMPIWSLTQERITKLTEERDKKIEEMKRLEQTAPSDLWLQDLEKLEQ 1129
>gi|19074112|ref|NP_584718.1| DNA TOPOISOMERASE II [Encephalitozoon cuniculi GB-M1]
gi|19068754|emb|CAD25222.1| DNA TOPOISOMERASE II [Encephalitozoon cuniculi GB-M1]
Length = 1144
Score = 631 bits (1627), Expect = e-177, Method: Compositional matrix adjust.
Identities = 330/647 (51%), Positives = 423/647 (65%), Gaps = 119/647 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E+ YQKK+ +EHILLRPDTYIGSVE + M++ + E M + I YVPGLYKIFDE
Sbjct: 3 TIEETYQKKTPVEHILLRPDTYIGSVEKEAQEMYVWDEENGRMVYKSIEYVPGLYKIFDE 62
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
I+VNA DNK RDPKM+ IK++++ E N ISV+NNGKGIPV HK+E ++VP +IF
Sbjct: 63 IIVNAADNKIRDPKMDVIKVSIDPEGNEISVYNNGKGIPVRIHKEENVYVPELIF----- 117
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
G+LLTSSNYND+E KVTGGRNGYGAKLCNIFS +FVVET+
Sbjct: 118 --------------------GNLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSKEFVVETA 157
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
E KK ++Q ++DNM PEI +K DFTKITF PDL +FKMT LD D+V L+ +R
Sbjct: 158 DCEVKKYYRQRYRDNMGVKEDPEISRYTKGDFTKITFKPDLRRFKMTRLDDDIVALLRKR 217
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAP 330
YD A KDVK+FLN +++ VK F++YVKLY ++++ +N RWE+A+
Sbjct: 218 VYDLAGIVKDVKIFLNEKRIEVKGFKEYVKLYIP------PGASVVHQVINDRWELALTT 271
Query: 331 SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNV 390
S+ FQQVSFVN I TTKGG HV+ VV+ IV ++E ++KK K
Sbjct: 272 SEEQFQQVSFVNGICTTKGGTHVNHVVERIVDPLVEAIQKKEK----------------- 314
Query: 391 KNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSF 450
G++++PFQV++ +++FIN LI NP FDSQTKEN+TL+ +F
Sbjct: 315 -------------------GLSVRPFQVRSCMFVFINSLIDNPAFDSQTKENLTLRASAF 355
Query: 451 GSTC---------------------------------------------VPKLEDANDAG 465
GS C +PKLEDAN AG
Sbjct: 356 GSKCEPMGDFVKSIIKNTPIVQKITSFAKAKQSQQLKKTDGAKTSRLSGIPKLEDANFAG 415
Query: 466 TKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEIN 525
T S DCTLILTEGDSAK+LAV+GL VVGRD YGVFPLRGKLLNVREA+HKQI+ENAEI+
Sbjct: 416 TSRSKDCTLILTEGDSAKTLAVAGLSVVGRDAYGVFPLRGKLLNVREASHKQIMENAEIS 475
Query: 526 NLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP 585
++ KILGLQ++K Y ED+ +LRYG +MIMTDQD DGSHIKGLIINF+ H +P+LL++P
Sbjct: 476 SIKKILGLQHNKVY---EDVSSLRYGHVMIMTDQDHDGSHIKGLIINFLDHFYPSLLKIP 532
Query: 586 -FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL+EFITPII+ATK + F++LPE+EE+K+ W+ IKYYK
Sbjct: 533 GFLQEFITPIIRATKKGQVRDFFTLPEYEEFKKNEDGWN---IKYYK 576
Score = 147 bits (371), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 69/116 (59%), Positives = 90/116 (77%), Gaps = 5/116 (4%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE+Y+PIIPMVLVNGAEGIGTGW T IPN NP ++V+NI+RMIRGEDP+ M P+Y+NF
Sbjct: 786 IEPEFYVPIIPMVLVNGAEGIGTGWSTSIPNFNPVDVVENIRRMIRGEDPVEMVPYYRNF 845
Query: 720 KGEIDYCGDSRFVVNGEIAILDDD-KLEITELQVGKWTTDYKDTLDTLLH-GAEKD 773
+G I+ G+ +F V+G I + D LEITEL VG WT +YK+ L++L+ G +D
Sbjct: 846 RGTIEKIGEGKFQVSG---IYEGDMDLEITELPVGTWTLNYKEFLESLVQAGVARD 898
Score = 46.2 bits (108), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
DY+YLL M+ SLT+ER L + +++E N L K P +LW +DL+
Sbjct: 1019 DYEYLLSMSILSLTVERIERLSNEHAKRLSEYNQLMGKTPKELWLEDLEVF 1069
>gi|401825934|ref|XP_003887061.1| DNA topoisomerase II [Encephalitozoon hellem ATCC 50504]
gi|392998219|gb|AFM98080.1| DNA topoisomerase II [Encephalitozoon hellem ATCC 50504]
Length = 1144
Score = 631 bits (1627), Expect = e-177, Method: Compositional matrix adjust.
Identities = 329/647 (50%), Positives = 425/647 (65%), Gaps = 119/647 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E+ YQKK+ +EHILLRPD+YIGSVE + M++ + E+ M + I YVPGLYKIFDE
Sbjct: 3 TIEETYQKKTPVEHILLRPDSYIGSVEREAQQMYIWDEESGRMIYKNIEYVPGLYKIFDE 62
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
I+VNA DNK RDPKMN IK++++ E N ISV+NNGKGIPV HK+E ++VP +IFG+LLT
Sbjct: 63 IIVNAADNKIRDPKMNVIKVSIDPEKNEISVYNNGKGIPVRIHKEENVYVPELIFGNLLT 122
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
SSNYND EE KVTGGRNGYGAKLCNIFS +FVVET+
Sbjct: 123 SSNYND-------------------------EEKKVTGGRNGYGAKLCNIFSKEFVVETA 157
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
E KK ++Q +++NM PEI +K+DFT+ITF PDL +FKM LD D+V L+ +R
Sbjct: 158 DCEVKKYYRQKYRNNMGIKEEPEISRYTKEDFTRITFKPDLRRFKMDRLDDDIVALLKKR 217
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAP 330
YD KDVK+FLN +K+ +K F++YVKLY + ++++ +N RWE+A+
Sbjct: 218 VYDLGGIVKDVKIFLNEKKINIKGFKEYVKLYVPPE------ANVVHQVINDRWELALTA 271
Query: 331 SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNV 390
S+ FQQVSFVN+I TTKGG HV+ VV+ IV+ + E ++KK K
Sbjct: 272 SEEQFQQVSFVNAICTTKGGSHVNHVVERIVEPLSEAIQKKEK----------------- 314
Query: 391 KNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSF 450
G+++KPFQ+K+ ++IF+NCLI NP FDSQTKEN+TL+ +F
Sbjct: 315 -------------------GLSVKPFQIKSCMFIFVNCLIENPAFDSQTKENLTLRVSAF 355
Query: 451 GSTC---------------------------------------------VPKLEDANDAG 465
GS C +PKLEDAN AG
Sbjct: 356 GSKCDPIGDFVKSVIKNTSIVQRVASFARARQSLQLKKTDGAKTSRLSGIPKLEDANFAG 415
Query: 466 TKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEIN 525
T S DCTLILTEGDSAK+LAVSGL VVGRD YGVFPLRGKLLNVREA+HKQI+EN+EI+
Sbjct: 416 TSRSKDCTLILTEGDSAKTLAVSGLSVVGRDIYGVFPLRGKLLNVREASHKQIMENSEIS 475
Query: 526 NLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP 585
++ KILGLQ++K Y ED +LRYG +MIMTDQD DGSHIKGLIINF+ H +P+LL++P
Sbjct: 476 SIKKILGLQHNKVY---EDTSSLRYGHVMIMTDQDHDGSHIKGLIINFLDHFYPSLLKIP 532
Query: 586 -FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL+EFITPII+ATK + F++LPE+EE+K+ W+ IKYYK
Sbjct: 533 GFLQEFITPIIRATKKGQVRDFFTLPEYEEFKKSEEGWN---IKYYK 576
Score = 171 bits (432), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 159/316 (50%), Gaps = 65/316 (20%)
Query: 639 LLFKMN----LHKVTSDSISMFIGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPR 694
L+F N L+ + D++S IEPE+Y+PIIPMVLVNGAEGIGTGW T IPN NP
Sbjct: 766 LIFNENDDAILNYLNDDNLS-----IEPEFYVPIIPMVLVNGAEGIGTGWSTSIPNFNPI 820
Query: 695 EIVDNIKRMIRGEDPLPMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGK 754
+I++NI+RMIR EDP+ M P+Y+NF+G I+ G+ +F V+G D LEITEL VG
Sbjct: 821 DIIENIRRMIRDEDPVEMTPYYRNFRGTIEKVGEGKFQVSG--VYEGDMDLEITELPVGT 878
Query: 755 WTTDYKDTLDTLLH-GAEKD--EVHP---------------------------------- 777
WT +YK+ L++L+ G KD E H
Sbjct: 879 WTLNYKEFLESLVQAGVVKDFKEYHTEKTVNFTVKLAKHVSNLKLNTTITINNMVCFDEK 938
Query: 778 -GPGRKSHPRPIAPKSYKID-----------DDSEEEEIEEVFHDNELAKPQKTGPQLER 825
G + S P+ I + Y + +EE+ + + K TG +
Sbjct: 939 LGIKKYSTPKDILKEFYDVRLRYYSIRKENMLKVMKEELVRLENKVRFIKEVSTGGLVIS 998
Query: 826 QERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNIL 885
+ R+A D EA + + DY+YLLGM+ SLT ER +L + K+ E N L
Sbjct: 999 RRRRAEIVFDLEARGYAKAD-----DYEYLLGMSILSLTAERIEKLSNEHSKKLEEYNRL 1053
Query: 886 KKKAPTDLWSDDLDAL 901
K P LW +DLDA
Sbjct: 1054 AGKTPKKLWLEDLDAF 1069
>gi|449328926|gb|AGE95201.1| DNA topoisomerase II [Encephalitozoon cuniculi]
Length = 1144
Score = 630 bits (1626), Expect = e-177, Method: Compositional matrix adjust.
Identities = 330/647 (51%), Positives = 422/647 (65%), Gaps = 119/647 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E+ YQKK+ +EHILLRPDTYIGSVE + M++ + E M + I YVPGLYKIFDE
Sbjct: 3 TIEETYQKKTPVEHILLRPDTYIGSVEKEAQEMYVWDEENGRMIYKSIEYVPGLYKIFDE 62
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
I+VNA DNK RDPKM+ IK++++ E N ISV+NNGKGIPV HK+E ++VP +IF
Sbjct: 63 IIVNAADNKIRDPKMDVIKVSIDPEGNEISVYNNGKGIPVRIHKEENVYVPELIF----- 117
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
G+LLTSSNYND+E KVTGGRNGYGAKLCNIFS +FVVET+
Sbjct: 118 --------------------GNLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSKEFVVETA 157
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
E KK ++Q ++DNM PEI +K DFTKITF PDL +FKMT LD D+V L+ +R
Sbjct: 158 DCEVKKYYRQRYRDNMGVKEDPEISRYTKGDFTKITFKPDLRRFKMTRLDDDIVALLRKR 217
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAP 330
YD A KDVK+FLN +++ VK F++YVKLY ++++ +N RWE+A+
Sbjct: 218 VYDLAGIVKDVKIFLNEKRIEVKGFKEYVKLYIP------PGASVVHQVINDRWELALTT 271
Query: 331 SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNV 390
S+ FQQVSFVN I TTKGG HV VV+ IV ++E ++KK K
Sbjct: 272 SEEQFQQVSFVNGICTTKGGTHVSHVVERIVDPLVEAIQKKEK----------------- 314
Query: 391 KNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSF 450
G++++PFQV++ +++FIN LI NP FDSQTKEN+TL+ +F
Sbjct: 315 -------------------GLSVRPFQVRSCMFVFINSLIDNPAFDSQTKENLTLRASAF 355
Query: 451 GSTC---------------------------------------------VPKLEDANDAG 465
GS C +PKLEDAN AG
Sbjct: 356 GSKCEPMGDFVKSIIKNTPIVQKITSFAKAKQSQQLKKTDGAKTSRLSGIPKLEDANFAG 415
Query: 466 TKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEIN 525
T S DCTLILTEGDSAK+LAV+GL VVGRD YGVFPLRGKLLNVREA+HKQI+ENAEI+
Sbjct: 416 TSRSKDCTLILTEGDSAKTLAVAGLSVVGRDAYGVFPLRGKLLNVREASHKQIMENAEIS 475
Query: 526 NLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP 585
++ KILGLQ++K Y ED+ +LRYG +MIMTDQD DGSHIKGLIINF+ H +P+LL++P
Sbjct: 476 SIKKILGLQHNKVY---EDVSSLRYGHVMIMTDQDHDGSHIKGLIINFLDHFYPSLLKIP 532
Query: 586 -FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL+EFITPII+ATK + F++LPE+EE+K+ W+ IKYYK
Sbjct: 533 GFLQEFITPIIRATKKGQVRDFFTLPEYEEFKKNEDGWN---IKYYK 576
Score = 147 bits (371), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 69/116 (59%), Positives = 90/116 (77%), Gaps = 5/116 (4%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE+Y+PIIPMVLVNGAEGIGTGW T IPN NP ++V+NI+RMIRGEDP+ M P+Y+NF
Sbjct: 786 IEPEFYVPIIPMVLVNGAEGIGTGWSTSIPNFNPVDVVENIRRMIRGEDPVEMVPYYRNF 845
Query: 720 KGEIDYCGDSRFVVNGEIAILDDD-KLEITELQVGKWTTDYKDTLDTLLH-GAEKD 773
+G I+ G+ +F V+G I + D LEITEL VG WT +YK+ L++L+ G +D
Sbjct: 846 RGTIEKIGEGKFQVSG---IYEGDMDLEITELPVGTWTLNYKEFLESLVQAGVARD 898
Score = 46.2 bits (108), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
DY+YLL M+ SLT+ER L + +++E N L K P +LW +DL+
Sbjct: 1019 DYEYLLSMSILSLTVERIERLSNEHAKRLSEYNQLMGKTPKELWLEDLEVF 1069
>gi|396081182|gb|AFN82800.1| DNA topoisomerase II [Encephalitozoon romaleae SJ-2008]
Length = 1144
Score = 630 bits (1624), Expect = e-177, Method: Compositional matrix adjust.
Identities = 329/647 (50%), Positives = 422/647 (65%), Gaps = 119/647 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E+ YQKK+ +EHILLRPD+YIGSVE + M++ + E+ M R I YVPGLYKIFDE
Sbjct: 3 TIEETYQKKTPVEHILLRPDSYIGSVEKEAQQMYIWDEESERMVCRNIEYVPGLYKIFDE 62
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
I+VNA DNK RDPKM+ IK++++ E N ISV+NNGKGIPV HK+E ++VP +IFG+LLT
Sbjct: 63 IIVNAADNKIRDPKMDVIKVSIDPEKNEISVYNNGKGIPVRIHKEENVYVPELIFGNLLT 122
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
SSNYND EE KVTGGRNGYGAKLCNIFS +F+VET+
Sbjct: 123 SSNYND-------------------------EEKKVTGGRNGYGAKLCNIFSKEFIVETA 157
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
E KK +KQ +++NM PEI +K DFT+ITF PDL +FKM LD D+V L+ +R
Sbjct: 158 DCEVKKYYKQKYRNNMGAKEEPEISRYTKGDFTRITFKPDLRRFKMDRLDDDIVALLKKR 217
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAP 330
YD KDVK+FLN +++ +K F++YVKLY ++++ +N RWEVA+
Sbjct: 218 VYDLGGIVKDVKIFLNEKRISIKGFREYVKLYIP------PGTNVVHQIINDRWEVALTT 271
Query: 331 SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNV 390
S+ FQQVSFVN+I TTKGG HV+ VV+ IV+ + E ++KK K
Sbjct: 272 SEEQFQQVSFVNAICTTKGGSHVNHVVERIVEPLSEAIQKKEK----------------- 314
Query: 391 KNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSF 450
G+++KPFQ+K+ ++IF+NCLI NP FDSQTKEN+TL+ +F
Sbjct: 315 -------------------GLSVKPFQIKSCMFIFVNCLIENPAFDSQTKENLTLRVSAF 355
Query: 451 GSTC---------------------------------------------VPKLEDANDAG 465
GS C +PKLEDAN AG
Sbjct: 356 GSKCEPIADFVKSVIKNTSIVQKVASFAKARQSLQLKKTDGAKTSRLSGIPKLEDANFAG 415
Query: 466 TKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEIN 525
T S DCTLILTEGDSAK+LAVSGL VVGRD YGVFPLRGKLLNVREA+HKQI+EN+EI+
Sbjct: 416 TNKSKDCTLILTEGDSAKTLAVSGLSVVGRDTYGVFPLRGKLLNVREASHKQIMENSEIS 475
Query: 526 NLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP 585
++ KILGLQ++K Y ED +LRYG +MIMTDQD DGSHIKGLIINF+ H +P+LL++P
Sbjct: 476 SIKKILGLQHNKVY---EDTSSLRYGHVMIMTDQDHDGSHIKGLIINFLDHFYPSLLKIP 532
Query: 586 -FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL+EFITPII+ATK + F++LPE+EE+K W+ IKYYK
Sbjct: 533 GFLQEFITPIIRATKKGQVRDFFTLPEYEEFKRSEEGWN---IKYYK 576
Score = 170 bits (430), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 119/323 (36%), Positives = 169/323 (52%), Gaps = 66/323 (20%)
Query: 639 LLFKMN----LHKVTSDSISMFIGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPR 694
L+F N L+ + D++S IEPE+Y+PIIPMVLVNGAEGIGTGW T IPN NP
Sbjct: 766 LIFNENDDAILNYLNDDNLS-----IEPEFYVPIIPMVLVNGAEGIGTGWSTSIPNFNPI 820
Query: 695 EIVDNIKRMIRGEDPLPMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGK 754
++V+NI+RMIRGEDP+ M P+Y+NF+G I+ G+ +F V+G D LEITEL VG
Sbjct: 821 DVVENIRRMIRGEDPVEMVPYYRNFRGSIEKIGEGKFQVSG--VYKGDMDLEITELPVGT 878
Query: 755 WTTDYKDTLDTLLH-GAEKD--EVHP---------------------------------- 777
WT +YK+ L++L+ G KD E H
Sbjct: 879 WTLNYKEFLESLVQAGVVKDFKEYHTEKTVNFTVKLAKHVSNLKLSNTITINNMVCFDEN 938
Query: 778 -GPGRKSHPRPIAP-------KSYKIDDDS----EEEEIEEVFHDNELAKPQKTGPQLER 825
G + S P+ I + Y + D+ ++E+ ++ + + K TG +
Sbjct: 939 LGIKKYSTPKDILRDFYDVRLRYYSMRKDNMMKVMKDELVKLENKVKFIKEVSTGGLIIN 998
Query: 826 QERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNIL 885
+ R+A D E+ + + DY+YLLGM+ SLT+ER +L + ++ E N L
Sbjct: 999 RRRKAEIIFDLESRGYARVD-----DYEYLLGMSILSLTVERIEKLNNEHAKRLEEYNKL 1053
Query: 886 KKKAPTDLWSDDLDAL-REKDKI 907
K P LW +DLDA RE KI
Sbjct: 1054 AGKTPKVLWLEDLDAFEREYLKI 1076
>gi|328773079|gb|EGF83116.1| hypothetical protein BATDEDRAFT_18312, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 1218
Score = 630 bits (1624), Expect = e-177, Method: Compositional matrix adjust.
Identities = 336/663 (50%), Positives = 422/663 (63%), Gaps = 118/663 (17%)
Query: 22 KKKTPA-NKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITY 80
KK+ P S+E+IYQKK+QLEHIL+RPDTYIGS E I +W+ + E M R I++
Sbjct: 74 KKQIPVKGGKSIEEIYQKKTQLEHILIRPDTYIGSTEFINTPLWVFDGE--RMVHRPISF 131
Query: 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
VPGLYKIFDEI+VNA DNK RDP M+ IKI++++E NTISV+NNG+GIP+ H E+++V
Sbjct: 132 VPGLYKIFDEIIVNAADNKVRDPTMDTIKISIDREKNTISVYNNGRGIPIEIHAKEQIYV 191
Query: 141 PTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNI 200
P +IFGHLLTSSNY+D +E KVTGGRNGYGAKLCNI
Sbjct: 192 PELIFGHLLTSSNYDD-------------------------DEKKVTGGRNGYGAKLCNI 226
Query: 201 FSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSL 259
FS+ F+VET+ S + FKQV+ +NMS T+P I +K +DFT+ITF PDL KFKMT +
Sbjct: 227 FSTYFMVETADSRSGRKFKQVFSNNMSSKTTPTITQNNKGEDFTQITFKPDLEKFKMTVI 286
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQD-EDGDPVKIIYE 318
D D L+ +RAYD A + +KVFLN ++ +K+F+DYV LY D + E G I+YE
Sbjct: 287 DDDFEALLKKRAYDLAGCVRGIKVFLNNTRIKIKDFKDYVDLYLDNVNPETGLKPPIVYE 346
Query: 319 NVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCT 378
+N RWE+A PSD F QVSF NSI T+KGG HV+ + D IV +++ VKKK+K
Sbjct: 347 KLNDRWEIAYTPSDGQFNQVSFANSICTSKGGTHVNTIADQIVTGLMDQVKKKDKK---- 402
Query: 379 IIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQ 438
+ LKP Q K+HIWIF+NC + NPTFDSQ
Sbjct: 403 -------------------------------AVPLKPHQAKSHIWIFVNCQVENPTFDSQ 431
Query: 439 TKENMTLQKGSFGSTC-------------------------------------------- 454
TKE +TL+ +FGS
Sbjct: 432 TKETLTLRTSAFGSKTPISEEFMKKVFRSGIIDTIMKFAKFKQDQLLKKTDGSGKKSRIN 491
Query: 455 -VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREA 513
+ KL+DAN+AGTKN CTLILTEGDSAKSLAVSGL VVGRD +GVFPLRGKLLNVREA
Sbjct: 492 GITKLDDANNAGTKNGGKCTLILTEGDSAKSLAVSGLSVVGRDNFGVFPLRGKLLNVREA 551
Query: 514 THKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINF 573
TH QI NAEI+ + +ILGLQ+ K Y ED TLRYG LMIMTDQD DGSHIKGLIINF
Sbjct: 552 THAQITGNAEISAIKQILGLQHGKVY---EDASTLRYGHLMIMTDQDHDGSHIKGLIINF 608
Query: 574 IHHNWPTLLRLP-FLEEFITPIIKATKA----REELSFYSLPEFEEWKEETTNWHTYKIK 628
+ H WP+LL +P FL EFITPI++ATK ++E+SF+++PEFE+WKE + + K
Sbjct: 609 LDHFWPSLLYIPGFLLEFITPIVRATKGKGHNKQEISFFTIPEFEQWKEVNSGGRGWTTK 668
Query: 629 YYK 631
Y+K
Sbjct: 669 YFK 671
Score = 130 bits (327), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 80/113 (70%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+P++PM+LVNGA+GIGTGW + IPN+NPR+IV+ + R++R E+ + PWY+ F
Sbjct: 881 IEPEWYLPVLPMLLVNGADGIGTGWSSSIPNYNPRDIVECLHRLMRHEELFEIHPWYRGF 940
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G+I+ R+ V G I +D + +EITEL + WT YK+ L+ L G EK
Sbjct: 941 SGKIERETPERYKVTGCIRKIDSNTVEITELPIRTWTQSYKEQLEAWLTGTEK 993
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 830 AAEGEDD-EAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKK 888
+EG DD G ++ +++DP + YDYLL M W+LT E+ +L K+ D+ E+ L K
Sbjct: 1141 GSEGSDDANDGDESVQDDDPRQGYDYLLSMPIWNLTWEKVQQLQKEMQDREDEIKALIGK 1200
Query: 889 APTDLWSDDLDAL 901
DLW DLDA
Sbjct: 1201 TIHDLWRFDLDAF 1213
>gi|168033077|ref|XP_001769043.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679677|gb|EDQ66121.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1172
Score = 627 bits (1618), Expect = e-176, Method: Compositional matrix adjust.
Identities = 333/660 (50%), Positives = 423/660 (64%), Gaps = 121/660 (18%)
Query: 24 KTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPG 83
+ P N S+E+ YQKK+QLEHILLRPDTY+GS+E T+++W+ E M R +T+VPG
Sbjct: 19 REPQNDKSIEETYQKKTQLEHILLRPDTYVGSIEKHTQSLWVY--EDEKMVNRSVTFVPG 76
Query: 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTM 143
LYKIFDEILVNA DNKQRDP M+ +K+ ++ E N ISV+NNG G+PV HK+E ++VP M
Sbjct: 77 LYKIFDEILVNAADNKQRDPSMDTVKVEIDVENNFISVFNNGDGVPVEIHKEEGVYVPEM 136
Query: 144 IFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSS 203
IF GHLLTSSNYND E K TGGRNGYGAKL NIFS+
Sbjct: 137 IF-------------------------GHLLTSSNYNDSEKKTTGGRNGYGAKLANIFST 171
Query: 204 KFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSG-SKDDFTKITFTPDLTKFKMTSLDKD 262
+F +ET+ + + +KQV+ +NMS + P+I + + +++TK++F PDL+KF MT L+ D
Sbjct: 172 EFTIETADGKRLRRYKQVFTNNMSLKSEPKITTCKANENWTKVSFKPDLSKFNMTHLESD 231
Query: 263 MVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGD-PVKIIYENV 320
+V L+++R D A K KV LNG++LP+K+FQDYV LY + + P+ IYE V
Sbjct: 232 VVALMSKRVMDVAGCLGKGCKVELNGKRLPIKSFQDYVGLYLSVANAGREEPLPRIYERV 291
Query: 321 NPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTII 380
+ RWEV ++ SD F QVSF NSIAT +GG HV V D IV ++ +V KKNK G
Sbjct: 292 SDRWEVCVSLSDGQFNQVSFCNSIATIRGGTHVAYVTDQIVTHVLALVNKKNKTAG---- 347
Query: 381 MLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTK 440
+KPFQ+KNH+W+F+N LI NPTFDSQTK
Sbjct: 348 --------------------------------VKPFQIKNHMWVFVNALIDNPTFDSQTK 375
Query: 441 ENMTLQKGSFGSTC--------------------------------------------VP 456
E +T + SFGS C +P
Sbjct: 376 ETLTTRASSFGSKCELSPEFLKKVAKCGVVENVLTWADFKQSKELKKNDGAKRQRITGIP 435
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S CTLILTEGDSAK+LA+SG+ VVGRDKYGVFPLRGKLLNVREA+HK
Sbjct: 436 KLDDANDAGGKSSEKCTLILTEGDSAKALAMSGISVVGRDKYGVFPLRGKLLNVREASHK 495
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEI N+ +ILGLQ+ K Y + K+LRYG LMIMTDQD DGSHIKGL+INFIH
Sbjct: 496 QIMENAEITNIKRILGLQHGKDY---DSTKSLRYGHLMIMTDQDHDGSHIKGLLINFIHS 552
Query: 577 NWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKE----ETTNWHTYKIKYYK 631
WP+LL++P FL EFITPI+KAT ++ LSFY++PE+E WKE ET W IKYYK
Sbjct: 553 FWPSLLKIPSFLVEFITPIVKATNKQKTLSFYTMPEYEAWKESLNGETKGW---TIKYYK 609
Score = 135 bits (339), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 87/120 (72%), Gaps = 6/120 (5%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY PIIP+VLVNG+EGIGTGW + +PN+NPREIV N++R++ G++ PM PWYK F
Sbjct: 819 IEPTWYCPIIPLVLVNGSEGIGTGWSSFVPNYNPREIVANLRRLLAGQEMEPMHPWYKGF 878
Query: 720 KGEIDYCGDSR-----FVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
KG I+ C ++ + + G I +D+ ++I+EL V KWT DYK+ LD ++ ++K++
Sbjct: 879 KGSIE-CSATKDSGFTYTITGAIDQIDETTIKISELPVRKWTQDYKEFLDVMMTPSDKNK 937
Score = 43.5 bits (101), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
DY+YLL M +LT E+ +L +RD E+ LKK P LW DLD
Sbjct: 1106 DYEYLLSMPIGTLTFEKVQQLRGQRDKMEGEVEELKKATPEALWIKDLD 1154
>gi|397581930|gb|EJK52100.1| hypothetical protein THAOC_28668 [Thalassiosira oceanica]
Length = 1027
Score = 627 bits (1617), Expect = e-176, Method: Compositional matrix adjust.
Identities = 334/668 (50%), Positives = 432/668 (64%), Gaps = 108/668 (16%)
Query: 4 DESDFDPDVQQN-----GNGPSPKK--KTPANKMSVEKIYQKKSQLEHILLRPDTYIGSV 56
+ESD++ + + N G S KK +T +K ++E+ QKKSQ EH+L+RPDTYIGSV
Sbjct: 70 EESDYEEENKSNLSNREARGKSVKKQARTKTSK-TIEETNQKKSQREHVLIRPDTYIGSV 128
Query: 57 EPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQET 116
EP+T+ M++ N TN +E R ITY PG YKI+DEI+VNA DNKQRDP M+ ++I ++ ET
Sbjct: 129 EPVTQPMFIFNETTNQIEERNITYTPGFYKIYDEIVVNAADNKQRDPSMDRLEIEIDAET 188
Query: 117 NTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTS 176
NTISV NNGKGIPVVEHK+ +VPT+IFGHLLT SN+
Sbjct: 189 NTISVMNNGKGIPVVEHKEHGCYVPTLIFGHLLTGSNF---------------------- 226
Query: 177 SNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKS 236
+D+E K TGGRNGYGAKL NIFS++F VE +E +K F Q ++DNMS+ P +K
Sbjct: 227 ---DDDEKKTTGGRNGYGAKLANIFSTEFTVECLDTENEKQFTQTFRDNMSRTEDPSVKK 283
Query: 237 GSKD-----DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAST-----KDVKVFLN 286
+K D+TKITF PDL +F M LD+ V L++RRAYD A S K + VFLN
Sbjct: 284 ATKSEMKKGDYTKITFKPDLNRFNMEKLDEYAVGLLSRRAYDIAGSMSGKGGKKLSVFLN 343
Query: 287 GEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDR--GFQQVSFVNSI 344
G+KLP+K+F+ Y+ L+ D + +E VN WEV + + G +Q+SFVN+I
Sbjct: 344 GKKLPIKDFKSYLALFDDLD------APLAFERVNDDWEVGVGVNTEGSGMKQISFVNAI 397
Query: 345 ATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDI 404
ATTKGG HV+ + IVK + VV+K+NK
Sbjct: 398 ATTKGGSHVNFITSKIVKAVQAVVEKRNK------------------------------- 426
Query: 405 GVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC---------- 454
GG +P Q+KNH+ +FINCL+ NPTFDSQTKENMTL++ SF
Sbjct: 427 ----GGKKAQPAQIKNHLTVFINCLVENPTFDSQTKENMTLKQSSFNKKIALSDQFMKRW 482
Query: 455 ---------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRG 505
+ KL+DAN+AGT S DCTLI+TEGDSAKSLAVSGL VVGRD YGVFPL+G
Sbjct: 483 KSAAYKLKGITKLDDANNAGTAKSKDCTLIITEGDSAKSLAVSGLSVVGRDFYGVFPLKG 542
Query: 506 KLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSH 565
K LNVR+ATH QI++N EI NLV+I+GL++ YT E++K+LRYG LMIM DQD DGSH
Sbjct: 543 KPLNVRDATHAQIMKNEEIMNLVEIMGLKFKTTYTK-ENIKSLRYGHLMIMADQDHDGSH 601
Query: 566 IKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEET-TNWH 623
IKGLIINFIHH WP+LL +P FL++FITPI+K TK ++ +F++LPE+ EWKE T +
Sbjct: 602 IKGLIINFIHHFWPSLLDVPGFLQQFITPIVKCTKGKKSETFFTLPEYNEWKEGTGDDAR 661
Query: 624 TYKIKYYK 631
+ IKYYK
Sbjct: 662 GWSIKYYK 669
Score = 116 bits (291), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 80/125 (64%), Gaps = 3/125 (2%)
Query: 650 SDSISMFIGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP 709
S IS FI EPE+Y+P+IPM+LVNG + IGTGW + +P +PREI+ N+++MIR EDP
Sbjct: 847 SHDISRFI---EPEFYMPVIPMLLVNGCQAIGTGWSSTVPQFSPREIISNLRKMIRKEDP 903
Query: 710 LPMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHG 769
M P+ + GE++ + G+I ++ L ITEL VGKWT DYK L+ L+
Sbjct: 904 EEMHPFNSGWMGELECNSKGGYKFKGKIRRKNETTLVITELPVGKWTQDYKMFLEGLMAS 963
Query: 770 AEKDE 774
E+ E
Sbjct: 964 DEEKE 968
>gi|339810|gb|AAA61210.1| topoisomerase II, partial [Homo sapiens]
Length = 886
Score = 626 bits (1614), Expect = e-176, Method: Compositional matrix adjust.
Identities = 311/521 (59%), Positives = 370/521 (71%), Gaps = 82/521 (15%)
Query: 158 EDKVTGV-VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKK 216
E KV V VP +IFG LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VET+C EYK
Sbjct: 2 EHKVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKH 61
Query: 217 SFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD+V L+TRRAYD A
Sbjct: 62 SFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAG 121
Query: 277 STKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
S + VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N RW+V + S++GF
Sbjct: 122 SCRGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGF 181
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
QQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 182 QQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK---------------------- 219
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC- 454
G+++KPFQVKNHIW+FINCLI NPTFDSQTKENMTLQ SFGS C
Sbjct: 220 -------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQ 266
Query: 455 --------------------------------------------VPKLEDANDAGTKNSI 470
+PKL+DANDAG K+S+
Sbjct: 267 LSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSL 326
Query: 471 DCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKI 530
+CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HKQI+ENAEINN++KI
Sbjct: 327 ECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKI 386
Query: 531 LGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEF 590
+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL+ FLEEF
Sbjct: 387 VGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEF 446
Query: 591 ITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
ITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 447 ITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 487
Score = 149 bits (377), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 708 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 767
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 768 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 822
>gi|325187394|emb|CCA21933.1| predicted protein putative [Albugo laibachii Nc14]
gi|325190307|emb|CCA24783.1| topoisomerase putative [Albugo laibachii Nc14]
Length = 1499
Score = 625 bits (1613), Expect = e-176, Method: Compositional matrix adjust.
Identities = 324/679 (47%), Positives = 422/679 (62%), Gaps = 129/679 (18%)
Query: 3 SDESDFDPDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITET 62
SDES+ D D Q+ N + K ++E+IYQKK+QL+HILLRPDTY+GS++P+T+
Sbjct: 52 SDESE-DTDRIQSKNA--------SQKQTIEQIYQKKTQLQHILLRPDTYVGSIDPVTQN 102
Query: 63 MWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVW 122
MW+ + E + M ++IT+VPGLYKIFDEI+VNACDNKQRD MN +++T++ ISVW
Sbjct: 103 MWIYDEEASKMHLKKITFVPGLYKIFDEIIVNACDNKQRDASMNTLRVTIDPTAGEISVW 162
Query: 123 NNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDE 182
NNGKGIPVV+HK+ +++VP +IFGHLLT SN ++D+
Sbjct: 163 NNGKGIPVVQHKEHEVYVPELIFGHLLTGSN-------------------------FDDK 197
Query: 183 EDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDF 242
+ K TGGRNGYGAKL NIFS+KF+VET+ KK +KQV+ DNMS+ SP I S +K DF
Sbjct: 198 KKKTTGGRNGYGAKLANIFSTKFIVETADKNVKKRYKQVFSDNMSQKESPAITSWNKQDF 257
Query: 243 TKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKL 301
T ITF PDL +FKM LD D+V L +R +D A T K ++V+LN EK+ K+F DY+ L
Sbjct: 258 TCITFRPDLKRFKMDRLDDDIVSLFKKRVFDIAGVTDKSLQVYLNEEKITCKSFPDYISL 317
Query: 302 YTDRQDEDGDPVK--IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDA 359
YT G+ K +I++ RW+V PSD GFQQ+SFVN I TT+GG+HV + D
Sbjct: 318 YT------GESAKEDVIFDKPTERWQVGFGPSDDGFQQISFVNGICTTRGGQHVTYIADQ 371
Query: 360 IVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVK 419
+V +++ VKK+NK G A+KP +K
Sbjct: 372 VVNKLVAAVKKRNK------------------------------------GEAVKPNYIK 395
Query: 420 NHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--------------------------- 452
N + I+++ LI NP FDSQTKE +T + SFGS
Sbjct: 396 NMMTIYVSALIDNPAFDSQTKETLTTRPSSFGSTHSLSDKFLKQIEKSGIVERVVSFAKF 455
Query: 453 -------------------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVV 493
T + KL+DAN AGT CTLILTEGDSAKSL + GL VV
Sbjct: 456 KQTAELQRKGAKGGNRSKLTGITKLDDANYAGTAEGRKCTLILTEGDSAKSLTIGGLSVV 515
Query: 494 GRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRL 553
GRD YGVFPL+GKLLNVREA+H QIL+N EI N+VKILGL+Y + Y E K+LRYG L
Sbjct: 516 GRDYYGVFPLKGKLLNVREASHSQILKNEEIQNVVKILGLKYGQVY---ESTKSLRYGHL 572
Query: 554 MIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEF 612
MIM DQD DGSHIKGL+INFIHH WP+LL++ F+ EFITPI+K K ++ FY++PE+
Sbjct: 573 MIMADQDHDGSHIKGLVINFIHHFWPSLLQVEGFMHEFITPIVKCAKGSKKEVFYTMPEY 632
Query: 613 EEWKEETTNWHTYKIKYYK 631
E W+ T N ++IKYYK
Sbjct: 633 EAWRLATNNGQGWRIKYYK 651
Score = 127 bits (319), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 80/115 (69%), Gaps = 7/115 (6%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPL-PMKPWYKN 718
IEPEWY+P+IPMVLVNG+EGIGTGW + IPN+NP ++++N++ I+GE P P+ PWY+
Sbjct: 861 IEPEWYVPVIPMVLVNGSEGIGTGWSSFIPNYNPLDLIENLRARIKGEAPTKPLVPWYRG 920
Query: 719 FKGEID-----YCGDSR-FVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
F G I+ GDS+ FVV G + DD L ITEL V WT YK L++L+
Sbjct: 921 FTGSIEERSGTRDGDSQAFVVRGIFHVEDDSTLVITELPVKTWTHTYKQFLESLM 975
Score = 43.1 bits (100), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
K Y+YLL M WSLT ER ++L + ++ E L+ K+ +LW DLD
Sbjct: 1143 KGYNYLLSMKIWSLTKERVDKLRAELKEREVEYKSLEAKSIEELWLTDLD 1192
>gi|168011945|ref|XP_001758663.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690273|gb|EDQ76641.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1238
Score = 625 bits (1611), Expect = e-175, Method: Compositional matrix adjust.
Identities = 331/670 (49%), Positives = 427/670 (63%), Gaps = 121/670 (18%)
Query: 14 QNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHM 73
Q+ +G + P S+E+ YQKK+QLEHILLRPDTY+GS+E T+T+W+ E M
Sbjct: 10 QSSSGFNVDANDPHGDKSIEETYQKKTQLEHILLRPDTYVGSIEKYTQTLWVY--EDGKM 67
Query: 74 ERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEH 133
R IT+VPGLYKIFDEILVNA DNKQRDP M+ +K+ ++ + N ISV+NNG G+PV H
Sbjct: 68 VNRSITFVPGLYKIFDEILVNAADNKQRDPSMDTVKVEIDIDQNFISVYNNGAGVPVEIH 127
Query: 134 KDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGY 193
K+E ++VP MIF GHLLTSSNYND E K TGGRNGY
Sbjct: 128 KEEGVYVPEMIF-------------------------GHLLTSSNYNDSEKKTTGGRNGY 162
Query: 194 GAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGS-KDDFTKITFTPDLT 252
GAKL NIFS++F +ET+ ++ +KQ++ +NMS + P+I + +++TK++F PDL+
Sbjct: 163 GAKLANIFSTEFTIETADGTRQRRYKQIFTNNMSLKSEPKITTCKPYENWTKVSFKPDLS 222
Query: 253 KFKMTSLDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGD 311
KF MT L+ D+V L+++R D A K KV LNG++LP+K+FQDYV LY + + +
Sbjct: 223 KFNMTHLESDVVALMSKRVVDIAGCIGKGCKVELNGKRLPIKSFQDYVGLYLSVANFNRE 282
Query: 312 -PVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKK 370
P+ IYE V+ RWE+ ++ SD F QVSF NSIAT +GG HV V D IV ++ +V K
Sbjct: 283 EPLPRIYEKVSDRWEICVSLSDGQFNQVSFCNSIATIRGGTHVAYVADQIVSHVLGLVNK 342
Query: 371 KNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLI 430
KNK G +KPFQ+KNH+W+F+N LI
Sbjct: 343 KNKTAG------------------------------------VKPFQIKNHMWVFVNALI 366
Query: 431 VNPTFDSQTKENMTLQKGSFGSTC------------------------------------ 454
NPTFDSQTKE +T + SFGS C
Sbjct: 367 NNPTFDSQTKETLTTRASSFGSKCELSAEFLKKVAKCGVVENVLTWADFKQSKELKKNDG 426
Query: 455 --------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGK 506
+PKL+DANDAG ++S CTLILTEGDSAK+LA+SG+ VVGRDKYGVFPLRGK
Sbjct: 427 AKRQRITGIPKLDDANDAGGRSSEQCTLILTEGDSAKALAMSGISVVGRDKYGVFPLRGK 486
Query: 507 LLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHI 566
LLNVREA+HKQI+ENAEI N+ +ILGLQ+ K Y ++ K+LRYG LMIMTDQD DGSHI
Sbjct: 487 LLNVREASHKQIMENAEITNIKRILGLQHGKDY---DNTKSLRYGHLMIMTDQDHDGSHI 543
Query: 567 KGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKE----ETTN 621
KGL+INFIH WP+LL++P FL EFITPI+KA+ ++ LSFY++PE+E WKE ET
Sbjct: 544 KGLLINFIHSFWPSLLKIPSFLVEFITPIVKASNKQKMLSFYTMPEYEAWKESLNGETKG 603
Query: 622 WHTYKIKYYK 631
W IKYYK
Sbjct: 604 W---TIKYYK 610
Score = 135 bits (339), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 86/120 (71%), Gaps = 6/120 (5%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY PIIP+VLVNG+EGIGTGW + +PN+NPREIV NI+R++ G++ PM PWYK+F
Sbjct: 820 IEPSWYCPIIPLVLVNGSEGIGTGWSSFVPNYNPREIVANIRRLLAGQELTPMHPWYKSF 879
Query: 720 KGEIDYCGDSR-----FVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
G I+ C ++ + + G I +D+ ++I EL V KWT DYK+ LD L+ ++K++
Sbjct: 880 MGTIE-CSATKDIGLTYTITGTIEQIDETTIKILELPVRKWTQDYKEFLDALMTPSDKNK 938
Score = 45.4 bits (106), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
DYDYLL M SLT E+ +L +RD E+ LK+ P LW DLD
Sbjct: 1107 DYDYLLSMPIGSLTYEKVQQLRGQRDKMEEEVEELKRATPEALWIKDLD 1155
>gi|440792851|gb|ELR14059.1| DNA gyrase/topoisomerase IV, A subunit [Acanthamoeba castellanii
str. Neff]
Length = 1559
Score = 623 bits (1606), Expect = e-175, Method: Compositional matrix adjust.
Identities = 326/649 (50%), Positives = 413/649 (63%), Gaps = 117/649 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E+IYQKK+ LEH+LLRPDTY+GS+E E MW+ + E M REI+YVPGLYKIFDE
Sbjct: 50 TIEQIYQKKTPLEHVLLRPDTYVGSIESREEKMWVYD-EVVGMNYREISYVPGLYKIFDE 108
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DN QRD M+ I++T+N +TNTISVWNNG+GIPV H +EKM VP +IFGHLLT
Sbjct: 109 ILVNAADNFQRDKTMDKIQVTINADTNTISVWNNGQGIPVELHAEEKMHVPELIFGHLLT 168
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
SSNY +D+ +KVTGGRNGYGAKL NIFS F VE
Sbjct: 169 SSNY-------------------------DDDMNKVTGGRNGYGAKLANIFSKHFSVECL 203
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
S+ K+ F W+ NM+K P IKS +K+D+T+++FTPDL +F M S DKD++ L T+
Sbjct: 204 DSKRKRKFFMEWEHNMTKRHEPVIKSTATKNDYTQVSFTPDLKRFNMKSFDKDIIALFTK 263
Query: 270 RAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIA 329
R YD A +KV+LN + + + +F+ YV+LY +++D V +++ +N RW V +A
Sbjct: 264 RVYDIAGCNPKLKVYLNEQLIKISSFEKYVELYFEKKD-----VPHVFQQINDRWSVCVA 318
Query: 330 PSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
S G FQQVSFVNSI TTKGG HV V D + K++ ++ KKNK
Sbjct: 319 LSSSGQFQQVSFVNSICTTKGGTHVKYVTDKLTKELTPIINKKNK--------------- 363
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
GG +K Q+KN+IW+F+N LIVNP FDSQTKE +T Q
Sbjct: 364 --------------------GGAEIKGHQIKNYIWVFVNSLIVNPAFDSQTKETLTSQAS 403
Query: 449 SFGSTC---------------------------------------------VPKLEDAND 463
FGS C + KL+DAN+
Sbjct: 404 KFGSKCEIPTDFVNKVVKKCAIVENVVQFAQFKQKQQLGRKGGSKKTRVSGIVKLDDANE 463
Query: 464 AGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAE 523
AG KN+ CTLILTEGDSAK+LAVSGL VVGRD+YGVFPL+GK LNVREATHKQI++N E
Sbjct: 464 AGGKNADKCTLILTEGDSAKTLAVSGLSVVGRDRYGVFPLKGKPLNVREATHKQIMDNVE 523
Query: 524 INNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR 583
++++ILGL+ + KY E K LRYGRLMIMTDQD DGSHIKGL+INF+HH WP LL+
Sbjct: 524 FGHIMEILGLKPNIKY---ESTKGLRYGRLMIMTDQDHDGSHIKGLVINFVHHFWPDLLK 580
Query: 584 LP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P FL EFITPI+KATK +E +SFY++ E+E WKEE N +KIKYYK
Sbjct: 581 TPGFLTEFITPIVKATKKKETISFYTMTEYETWKEENNNGQGWKIKYYK 629
Score = 127 bits (318), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/116 (53%), Positives = 81/116 (69%), Gaps = 3/116 (2%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPE+Y+PIIP+ LVNG EGIGTGW T +PN+NPR+IVDNIKRM+R E P M PWY+ F
Sbjct: 839 VEPEFYVPIIPLSLVNGGEGIGTGWSTFVPNYNPRDIVDNIKRMLRNETPKEMIPWYRAF 898
Query: 720 KGEI--DYCGDS-RFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
+G++ D G + R+ + G D LEITEL +G WT +K L+TLL +K
Sbjct: 899 EGQLVEDKDGKTPRYRILGIWNKPDPHTLEITELPIGVWTQGFKKFLETLLQPEKK 954
Score = 61.6 bits (148), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIH 908
Y+YLLGM W+LTMER +L ++RD+K EL+ LK DLW DLDA E + H
Sbjct: 1131 YNYLLGMPIWNLTMERVQKLQQQRDEKQEELDTLKATPIKDLWERDLDAFLEAFEAH 1187
>gi|348667921|gb|EGZ07746.1| hypothetical protein PHYSODRAFT_565596 [Phytophthora sojae]
Length = 1289
Score = 622 bits (1605), Expect = e-175, Method: Compositional matrix adjust.
Identities = 330/711 (46%), Positives = 425/711 (59%), Gaps = 152/711 (21%)
Query: 7 DFDPDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLM 66
D D + N K TP K S+E+IYQKK+QLEHILLRPDTY+GS+E + ++MW+
Sbjct: 68 DVDASEDEKDNALPEDKGTP--KQSIEQIYQKKTQLEHILLRPDTYVGSIEHVEQSMWVF 125
Query: 67 NRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGK 126
+ E M R+I YVPGLYKIFDEI+VNACDNKQRD MN +K+T++ E N ISVWNNGK
Sbjct: 126 DDEKKRMVNRKINYVPGLYKIFDEIIVNACDNKQRDKSMNTLKVTIDVEQNEISVWNNGK 185
Query: 127 GIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKV 186
GIP+V HK+ K++VP +IFGHLLT SN ++D++ K
Sbjct: 186 GIPIVLHKEHKVYVPELIFGHLLTGSN-------------------------FDDKKKKT 220
Query: 187 TGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKIT 246
TGGRNGYGAKL NIFS++FVVET+ + K+ +KQV+++NM K P I ++ DFT I+
Sbjct: 221 TGGRNGYGAKLANIFSTEFVVETADASTKQRYKQVFENNMGKKNPPSITKWAQKDFTCIS 280
Query: 247 FTPDLTKFKMTSLDKDMVDLITRRAYD-AAASTKDVKVFLNGEKLPVKNFQDYVKLY--- 302
F PDL +FK+ L+ D+V L +R YD A S K + VFLNGEK+P+K+F YV LY
Sbjct: 281 FKPDLERFKLDFLNDDIVALFKKRVYDVAGVSGKGLNVFLNGEKIPIKSFPQYVALYPGP 340
Query: 303 -------TDRQDEDGDPVK----------------------------IIYENVNPRWEVA 327
+ D+D P + +I+E + RW+V
Sbjct: 341 RGFEADTETKDDDDSHPEENDDDDDYSEEKGKKAKAKAKPTNVTKNGVIFEKPDERWQVG 400
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S+ GFQQVSFVN I TTKGG+HV +VD + +++ V+KKKNK
Sbjct: 401 VGQSEDGFQQVSFVNGICTTKGGQHVSYIVDQVTTKLVNVLKKKNK-------------- 446
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
G A+KP +KNH++++++ LI NP FDSQTKE +T +
Sbjct: 447 ----------------------GEAVKPNYIKNHMFVYVSALIDNPAFDSQTKETLTTRA 484
Query: 448 GSFGSTC----------------------------------------------VPKLEDA 461
SFGST +PKL+DA
Sbjct: 485 NSFGSTFSLTDKFLKQVEKSGLVEKILSFAAFKQTAELRRKGGGGGKRSRLTGIPKLDDA 544
Query: 462 NDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILEN 521
N AGT S DCTLILTEGDSAK++AV GL VVGRD YGVFPLRGK+LNVREA+H QIL+N
Sbjct: 545 NHAGTAKSKDCTLILTEGDSAKTVAVGGLAVVGRDYYGVFPLRGKMLNVREASHSQILKN 604
Query: 522 AEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTL 581
EI N+VKILGL+Y +KY E K LRYG LMIM DQD DGSHIKGL+IN IHH WP+L
Sbjct: 605 EEIQNVVKILGLKYGQKY---ESTKGLRYGHLMIMADQDHDGSHIKGLVINLIHHFWPSL 661
Query: 582 LRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
L + FL+EFITPI+K +K R + FY++PE+E W+E T + IKYYK
Sbjct: 662 LLVDGFLQEFITPIVKCSKGRTKEVFYTMPEYEAWRERTNQGRGWVIKYYK 712
Score = 126 bits (316), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 79/121 (65%), Gaps = 7/121 (5%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWYIP+IPMVLVNG++GIGTGW + +PN+NP +I+ +++MI GE+ P+ PWY+ F
Sbjct: 922 IEPEWYIPVIPMVLVNGSDGIGTGWSSSVPNYNPLDIIKGLRQMINGEEASPLTPWYRGF 981
Query: 720 KGEIDYCGDSR------FVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLH-GAEK 772
G I +SR ++V G + DD L I+EL V WT YK L+ LL G K
Sbjct: 982 TGHIVEKTNSRGTDTGNYIVQGLYEVTDDSTLVISELPVKTWTQSYKQFLEGLLETGTIK 1041
Query: 773 D 773
D
Sbjct: 1042 D 1042
Score = 51.2 bits (121), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 847 DPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDK 906
D + YDYLL M WSLT ER + L + ++ E +L+ + DLW DLDAL +K
Sbjct: 1198 DASRGYDYLLSMKIWSLTKERVDNLRAELQEREQEYTVLEGRTVRDLWLTDLDAL---EK 1254
Query: 907 IHPCPGGNRTRGLAL--KRQTRYQP 929
+ R R L+ K++TR P
Sbjct: 1255 MITETEAQRERILSHTPKKKTRAAP 1279
>gi|403345854|gb|EJY72307.1| DNA topoisomerase 2 [Oxytricha trifallax]
Length = 1410
Score = 622 bits (1604), Expect = e-175, Method: Compositional matrix adjust.
Identities = 330/660 (50%), Positives = 421/660 (63%), Gaps = 114/660 (17%)
Query: 23 KKTPANKM-SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYV 81
KK+ +NK ++E+IYQKK+QLEHILLRPDTYIGS+E + +W+ +++ + ++ +++ YV
Sbjct: 4 KKSNSNKQDAIEEIYQKKTQLEHILLRPDTYIGSIEMYQQYLWVYDKDNDRIDYKQVQYV 63
Query: 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVP 141
PGLYKIFDEILVNA DN Q DP MN IK+ ++ E N I VWNNGKGIPV HK +VP
Sbjct: 64 PGLYKIFDEILVNAADNFQNDPTMNLIKVEIDPEQNKIQVWNNGKGIPVQIHKVHNCYVP 123
Query: 142 TMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIF 201
MIFG LLTSSNYN D + KVTGGRNG+GAKL NIF
Sbjct: 124 DMIFGQLLTSSNYN-------------------------DNKKKVTGGRNGFGAKLANIF 158
Query: 202 SSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLD 260
S+KF+VET+ S+ KK +KQVWK+NMS P+I SK DD+T +TF PDL + M LD
Sbjct: 159 SNKFIVETADSKNKKCYKQVWKNNMSIREEPKITDNSKNDDYTCVTFYPDLRRLGMEVLD 218
Query: 261 KDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYE- 318
D+V L+T+R YD A T +V+V LNG+ + +KNF Y LY + DE KI+ +
Sbjct: 219 NDIVSLMTKRVYDMAGCTPANVRVKLNGKSIEIKNFNTYCDLYL-KNDETKQLPKIVEKY 277
Query: 319 NVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCT 378
+ RWE+ + SD FQQVSFVNSI T KGG HV+ + D IV++I EV+KKK+K
Sbjct: 278 DQGARWEIIASLSDGQFQQVSFVNSICTIKGGSHVNYIADQIVEKISEVLKKKHK----- 332
Query: 379 IIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQ 438
G+ +KP Q+K+++W+F+NCLI NP FDSQ
Sbjct: 333 -------------------------------GVDIKPHQIKSNLWLFVNCLIENPAFDSQ 361
Query: 439 TKENMTLQKGSFGSTC-------------------------------------------- 454
TKE +T + SFGSTC
Sbjct: 362 TKETLTTKPNSFGSTCTLTEKFLKDILASGIIESIVSVAKAKEEAKLVRNLNQGKKKSKL 421
Query: 455 --VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVRE 512
+PKLEDANDAGTK++ DCT+ILTEGDSAKSLA++G+ VVGRDK+GVFPLRGK LNVRE
Sbjct: 422 MGIPKLEDANDAGTKHARDCTIILTEGDSAKSLALAGIEVVGRDKFGVFPLRGKFLNVRE 481
Query: 513 ATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIIN 572
A KQI++N EI NL+KI+GL+ KKY D+ LRYG+LMIMTDQD DGSHIKGL+IN
Sbjct: 482 AGSKQIMDNPEIQNLIKIIGLKIGKKYEVDADLNDLRYGKLMIMTDQDHDGSHIKGLLIN 541
Query: 573 FIHHNWPTLLR-LPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FIH WPTL+R F+ EF+TPIIKATK E SF+++PE+E+W + N +KIKYYK
Sbjct: 542 FIHFFWPTLMRNNGFVREFVTPIIKATKGNEVYSFFTIPEYEQWA-DGRNLKGWKIKYYK 600
Score = 133 bits (334), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 80/110 (72%), Gaps = 3/110 (2%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP++Y+PIIPM LVNGAEGIGTGW T IP HNP++IVDN+KRM++GE M+PWYK +
Sbjct: 810 IEPDYYLPIIPMCLVNGAEGIGTGWSTFIPCHNPKDIVDNLKRMMKGEPYQTMRPWYKGY 869
Query: 720 KGEIDYC--GDSRFVVNGEIAILDDD-KLEITELQVGKWTTDYKDTLDTL 766
G I+ G + ++V G +LDD L ITEL +GKWT DYK L+ L
Sbjct: 870 LGSIETLQGGKNGYLVRGNYEVLDDGMSLVITELPIGKWTRDYKTFLEEL 919
>gi|430814552|emb|CCJ28239.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1482
Score = 621 bits (1602), Expect = e-174, Method: Compositional matrix adjust.
Identities = 332/648 (51%), Positives = 424/648 (65%), Gaps = 111/648 (17%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+ +IYQK SQLEHIL RPDTYIGS+E ++ +W+ + TN M+ R+++ VPGLYKIFDE
Sbjct: 84 TTSEIYQKLSQLEHILKRPDTYIGSIEFTSQHIWVYDDNTNAMKYRQVSIVPGLYKIFDE 143
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNK RDP M+ IK+ ++E N IS++NNG+GIP+ H EK+++P +IFGHLLT
Sbjct: 144 ILVNAADNKIRDPNMDTIKVEFSREKNVISIYNNGRGIPIEIHNKEKVWIPELIFGHLLT 203
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
SSNY+D EE KVTGGRNGYGAKLCNIFS++F+VET+
Sbjct: 204 SSNYDD-------------------------EEKKVTGGRNGYGAKLCNIFSTEFIVETA 238
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITR 269
KK++KQV+ +NM+K P IK KD ++T+ITF PDL +F M +D D+ + R
Sbjct: 239 DRATKKTYKQVFLNNMTKKKDPVIKENKKDEEYTRITFKPDLERFGMKEIDSDLESVFKR 298
Query: 270 RAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQD-EDGDPVKIIYENVNPRWEVAI 328
R YD A S K+VKVFLNGE++ VK+F+ Y+++Y + D E+ II+E VN RWEVA
Sbjct: 299 RVYDLAGSVKNVKVFLNGERIKVKSFKQYIEMYLNSDDSENNLKPTIIHEVVNDRWEVAF 358
Query: 329 APSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
SD F QVSFVNSIATT+GG HV+ V D IV ++IE VKKKNK
Sbjct: 359 TVSDGQFNQVSFVNSIATTRGGTHVNYVSDQIVLKLIEAVKKKNK--------------- 403
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
+ +KPFQVKNHIW+FIN LI NP+FDSQTKE +TL++
Sbjct: 404 ---------------------NIPIKPFQVKNHIWVFINSLIENPSFDSQTKETLTLKQT 442
Query: 449 SFGSTCV--------------------------------------------PKLEDANDA 464
+FGS C+ PKLEDAN A
Sbjct: 443 AFGSKCILSDDFIKKVLKTPIMEKILDTAQKKADQLMKKTDGSKKMRITGLPKLEDANKA 502
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
GTK CTLILTEGDSAKSLA+SG+GVVGRD +GV+PLRGKLLNVREA+H+QI +NAEI
Sbjct: 503 GTKEGHKCTLILTEGDSAKSLAMSGIGVVGRDYFGVYPLRGKLLNVREASHEQISKNAEI 562
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
N + +I+GLQ+ K YT+ + LRYG LMIMTDQD DGSHIKGLIIN++ ++P+LL +
Sbjct: 563 NAIKQIMGLQHKKVYTSTSE---LRYGHLMIMTDQDHDGSHIKGLIINYLESSFPSLLEI 619
Query: 585 P-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P FL EFITPI+KATK +E +F+++PE+E WKE N +KIKYYK
Sbjct: 620 PGFLIEFITPIVKATKGTQEKTFFTIPEYEYWKESVDNAKGWKIKYYK 667
Score = 130 bits (328), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 83/118 (70%), Gaps = 3/118 (2%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY+PIIP++LVNG EGIGTGW + IPN NP ++V+NI+RM+ GE PM PWY+ F
Sbjct: 877 IEPLWYVPIIPLILVNGCEGIGTGWSSYIPNFNPIDLVNNIRRMMNGEKLEPMHPWYRGF 936
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDEVHP 777
G I+ GD ++ ++G I +DD +EITEL + WT D K+ L+ + G+ D+V P
Sbjct: 937 NGSIEKQGD-KYKISGCIRQIDDTTVEITELPIRFWTQDMKEFLELSVVGS--DKVQP 991
Score = 54.3 bits (129), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 38/73 (52%), Gaps = 11/73 (15%)
Query: 831 AEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAP 890
AE +DD+A YDYLL M WSLT E+ +LLK + DK EL L K
Sbjct: 1143 AENDDDDATG-----------YDYLLSMPLWSLTAEKVEKLLKDKLDKENELESLLKLTV 1191
Query: 891 TDLWSDDLDALRE 903
DLW+ DLD E
Sbjct: 1192 KDLWNKDLDNFVE 1204
>gi|449015438|dbj|BAM78840.1| topoisomerase II [Cyanidioschyzon merolae strain 10D]
Length = 1576
Score = 619 bits (1595), Expect = e-173, Method: Compositional matrix adjust.
Identities = 313/662 (47%), Positives = 420/662 (63%), Gaps = 130/662 (19%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNR----------ETNHMERREITY 80
S+E+ YQK SQLEH+LLRPDTYIGS + +E +W+++ + + R+++Y
Sbjct: 19 SIEETYQKLSQLEHVLLRPDTYIGSTQRTSEKLWVLDDTIAEEGASQGSSRRVVFRDVSY 78
Query: 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
VPGLYKIFDEILVNA D+KQRDP ++ I++ V+ E N I+V+NNG GIPV H E +V
Sbjct: 79 VPGLYKIFDEILVNAADHKQRDPTLDEIRVDVDAENNRITVYNNGSGIPVEIHSKEGCYV 138
Query: 141 PTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNI 200
P +IFGHLLTSSNY+D EE KVTGGRNG+GAKL NI
Sbjct: 139 PELIFGHLLTSSNYDD-------------------------EERKVTGGRNGFGAKLANI 173
Query: 201 FSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIK-SGSKDDFTKITFTPDLTKFKMTSL 259
FS++F+VET ++ + F+QV++ NM + P+I+ +KD++T+++F PDL +F M +L
Sbjct: 174 FSTEFIVET--ADGRHCFRQVFRSNMQRCEEPQIRPCSAKDNYTRVSFVPDLQRFGMNAL 231
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYE 318
D D + L+ +R +D A VKV+ NG +LP+++F+DY+KLY +R+D +YE
Sbjct: 232 DADTLALMEKRVHDIAGCNPGVKVYWNGSRLPIRSFRDYIKLYLAERED-----TSFVYE 286
Query: 319 NVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCT 378
+ RWE+A+APSD FQQVSFVNSI T KGG HV+ + D IV ++E + +K+K+L
Sbjct: 287 RGHERWELAVAPSDGQFQQVSFVNSIWTIKGGTHVNHIADQIVNAVLEHLSRKHKNL--- 343
Query: 379 IIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQ 438
+KPFQV+NH+W+F+ CLI NP FDSQ
Sbjct: 344 ---------------------------------KVKPFQVRNHLWLFVRCLIENPAFDSQ 370
Query: 439 TKENMTLQKGSFGSTC-------------------------------------------- 454
TKE +T + SFGS C
Sbjct: 371 TKETLTSRPQSFGSRCELSAEFTRKLLRSDIIGNVLEFARFRQDAELKKTDGGKRQRVLG 430
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+PKL+DAN AGT+ S CTLILTEGDSAK+LA+SGL VVGRD YGVFPLRGKLLNVREAT
Sbjct: 431 IPKLDDANKAGTRESAKCTLILTEGDSAKALAISGLSVVGRDYYGVFPLRGKLLNVREAT 490
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
HKQI+EN EIN L KILGLQ+ K+Y + ++ LRYG +MIMTDQD DGSHIKGL++NF
Sbjct: 491 HKQIMENTEINLLKKILGLQHGKEYDQ-DSVRQLRYGHVMIMTDQDHDGSHIKGLLVNFF 549
Query: 575 HHNWPTLLRLP-FLEEFITPIIKATKAR----EELSFYSLPEFEEWKEETTNWHTYKIKY 629
HH WP+LLR+P FL EFITPI+KAT R EE+ F+++PE+++W++ ++ + IKY
Sbjct: 550 HHFWPSLLRIPGFLLEFITPIVKATAKRGERLEEVVFFTIPEYQQWRQSQSSLRGWTIKY 609
Query: 630 YK 631
YK
Sbjct: 610 YK 611
Score = 103 bits (258), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 72/120 (60%), Gaps = 10/120 (8%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMI--------RGEDPLP 711
IEP+WY P+IP+VLVNGAEGIGTGW T IP HNPR++V ++ M+ +
Sbjct: 821 IEPKWYCPVIPLVLVNGAEGIGTGWSTNIPCHNPRDLVRILRSMLLESHGALDADNESAT 880
Query: 712 MKPWYKNFKGEIDYCGD--SRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHG 769
+ PWY+ F+G I + + V G +A D ++ I EL + WT YK+ L+TL+ G
Sbjct: 881 LVPWYRGFRGSIVAVPHHPTNYEVFGCMARSSDGRVRIRELPLRTWTQPYKEWLETLVVG 940
Score = 57.4 bits (137), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 12/112 (10%)
Query: 803 EIEEVFHDNELAKPQKTGPQLERQER--QAAEGEDDEAGSQTQE------EEDPDKD--- 851
E+ + H A+ TG +R++R +AA G+ G+ + + D KD
Sbjct: 1086 ELLDELHQRNFAR-LPTGNNADREQRVSEAASGDGTPDGTSSDQVGGNGVHADHPKDATG 1144
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
YDYLL M WSLT ER EL ++ +K EL ++ P++LW DDL L +
Sbjct: 1145 YDYLLSMPLWSLTRERVQELQRQHQEKAAELARMQATRPSELWLDDLTRLEQ 1196
>gi|19112597|ref|NP_595805.1| DNA topoisomerase II [Schizosaccharomyces pombe 972h-]
gi|12644105|sp|P08096.2|TOP2_SCHPO RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
II
gi|3393015|emb|CAA20107.1| DNA topoisomerase II [Schizosaccharomyces pombe]
Length = 1485
Score = 618 bits (1594), Expect = e-173, Method: Compositional matrix adjust.
Identities = 318/643 (49%), Positives = 406/643 (63%), Gaps = 111/643 (17%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQ+ + EH+L RPDTYIGS+EP T MW+ + E N ++ + +TYVPGLYKIFDEI+VNA
Sbjct: 78 YQRLTPREHVLRRPDTYIGSIEPTTSEMWVFDSEKNKLDYKAVTYVPGLYKIFDEIIVNA 137
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP MN +K+T++ E N IS++NNGKGIP+ H EK+++P +IFG+LLTSSNY
Sbjct: 138 ADNKVRDPNMNTLKVTLDPEANVISIYNNGKGIPIEIHDKEKIYIPELIFGNLLTSSNY- 196
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
+D + KVTGGRNGYGAKLCNIFS++FVVET+ E
Sbjct: 197 ------------------------DDNQKKVTGGRNGYGAKLCNIFSTEFVVETADKERM 232
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
K +KQ W DNMS+ + P I S K D++TKITF PDL KF M +D DMV +I RR YD
Sbjct: 233 KKYKQTWYDNMSRKSEPVITSLKKPDEYTKITFKPDLAKFGMDKIDDDMVSIIKRRIYDM 292
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDE-DGDPVKIIYENVNPRWEVAIAPSDR 333
A + ++ KV+LN E++ + F+ YV++Y + D +P ++IYE+VN RW+VA A SD
Sbjct: 293 AGTVRETKVYLNNERISISGFKKYVEMYLASDTKPDEEPPRVIYEHVNDRWDVAFAVSDG 352
Query: 334 GFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNN 393
F+QVSFVN+I+T +GG HV+ V + IV I EVVKK+NK
Sbjct: 353 QFKQVSFVNNISTIRGGTHVNYVANKIVDAIDEVVKKENKK------------------- 393
Query: 394 KLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGST 453
+K FQ+KN++ +F+NC I NP+FDSQTKE +T + +FGS
Sbjct: 394 -----------------APVKAFQIKNYVQVFVNCQIENPSFDSQTKETLTTKVSAFGSQ 436
Query: 454 C--------------------------------------------VPKLEDANDAGTKNS 469
C + KLEDAN AGTK S
Sbjct: 437 CTLSDKFLKAIKKSSVVEEVLKFATAKADQQLSKGDGGLRSRITGLTKLEDANKAGTKES 496
Query: 470 IDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVK 529
C LILTEGDSAKSLAVSGL VVGRD YGVFPLRGKLLNVREA+H QIL N EI + K
Sbjct: 497 HKCVLILTEGDSAKSLAVSGLSVVGRDYYGVFPLRGKLLNVREASHSQILNNKEIQAIKK 556
Query: 530 ILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLE 588
I+G + K YT D+K LRYG LMIMTDQD DGSHIKGLIIN++ ++P+LL++P FL
Sbjct: 557 IMGFTHKKTYT---DVKGLRYGHLMIMTDQDHDGSHIKGLIINYLESSYPSLLQIPGFLI 613
Query: 589 EFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+FITPIIK T+ + +FY+LPE+E WKE N +KIKYYK
Sbjct: 614 QFITPIIKCTRGNQVQAFYTLPEYEYWKEANNNGRGWKIKYYK 656
Score = 130 bits (326), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 79/113 (69%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE+Y+PI+PMVLVNGAEGIGTGW T IPN+NP++I N++ M+ GE M PWY+ F
Sbjct: 866 IEPEYYVPILPMVLVNGAEGIGTGWSTFIPNYNPKDITANLRHMLNGEPLEIMTPWYRGF 925
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
+G I R+ ++G I + ++K+EITEL + WT D K+ L+ L G EK
Sbjct: 926 RGSITKVAPDRYKISGIINQIGENKVEITELPIRFWTQDMKEYLEAGLVGTEK 978
Score = 71.6 bits (174), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 57/89 (64%), Gaps = 4/89 (4%)
Query: 813 LAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELL 872
++KP+K L E + A E++++G +Q+E D D Y+YLL M WSLT ER ELL
Sbjct: 1114 ISKPKKG--HLVDLEVENALAEEEQSGDVSQDE-DSDA-YNYLLSMPLWSLTYERYVELL 1169
Query: 873 KKRDDKMTELNILKKKAPTDLWSDDLDAL 901
KK+D+ M EL+ L KK P +LW DLDA
Sbjct: 1170 KKKDEVMAELDALIKKTPKELWLHDLDAF 1198
>gi|357137146|ref|XP_003570162.1| PREDICTED: DNA topoisomerase 2-like [Brachypodium distachyon]
Length = 1494
Score = 618 bits (1594), Expect = e-173, Method: Compositional matrix adjust.
Identities = 324/651 (49%), Positives = 412/651 (63%), Gaps = 116/651 (17%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E++YQKK+QLEHILLRPDTYIGSVE T+ +W+ + M R +TYVPGLYKIFDE
Sbjct: 27 TIEEMYQKKTQLEHILLRPDTYIGSVEKHTQPLWVY--DDGAMVHRPVTYVPGLYKIFDE 84
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNKQRDPKM+ +++ ++ E +SV+NNG GIPV H+ E ++VP MIF
Sbjct: 85 ILVNAADNKQRDPKMDSLRVFIDVEGCCVSVYNNGDGIPVEIHQAEGVYVPEMIF----- 139
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
GHLLTSSNYND E K TGGRNGYGAKL NIFS++F +ET+
Sbjct: 140 --------------------GHLLTSSNYNDNEQKTTGGRNGYGAKLTNIFSTEFTIETA 179
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
+K +KQV+ +NM K + PEI K +++T++TF PDL KF M L+ D+V L+ +
Sbjct: 180 DGHRQKKYKQVFSENMGKKSEPEISKCKQSENWTRVTFKPDLAKFNMAHLEDDVVALMKK 239
Query: 270 RAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAI 328
R D A + K VKV LNG+K+P K+F +YV LY D +DG + IY+ VN RWEV +
Sbjct: 240 RVVDMAGTLGKTVKVELNGQKVPAKSFLEYVNLYIDSASKDGVKLPSIYQKVNDRWEVCV 299
Query: 329 APSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
+ S+ FQQVSFVN IAT +GG HVD V + I ++ VV KKNK
Sbjct: 300 SLSEGQFQQVSFVNGIATIRGGTHVDYVANQIATHVMAVVNKKNKQAN------------ 347
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
+K VK ++W+F+N LI NP FDSQTKE +T ++G
Sbjct: 348 ------------------------MKLHTVKGYLWVFVNALIDNPAFDSQTKETLTTRQG 383
Query: 449 SFGSTC--------------------------------------------VPKLEDANDA 464
SFGS C +PKLEDANDA
Sbjct: 384 SFGSKCDLSDDFLKKVADSGVVSNLLSWADFKLSKELKKTDGSKRSNVLGIPKLEDANDA 443
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
G ++S CTLILTEGDSAK+LA++G G+VG D YGVFPLRGKLLNVREATHKQ++ENAEI
Sbjct: 444 GGRDSDKCTLILTEGDSAKALAMAGRGIVGNDHYGVFPLRGKLLNVREATHKQMMENAEI 503
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
N+ KI+GLQ+ K+Y + +D LRYG LMIMTDQD DGSHIKGL+INFIH +WP+LL++
Sbjct: 504 QNIKKIIGLQHGKEYNSTKD---LRYGHLMIMTDQDHDGSHIKGLLINFIHSSWPSLLKV 560
Query: 585 P-FLEEFITPIIKATKAREE--LSFYSLPEFEEWKEET-TNWHTYKIKYYK 631
P FL EFITPIIKAT R + +SFYS+P++E WKE N + IKYYK
Sbjct: 561 PSFLVEFITPIIKATNKRSKSVISFYSMPDYEAWKERLGANASAWSIKYYK 611
Score = 126 bits (317), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 74/108 (68%), Gaps = 4/108 (3%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY+PIIPMVLVNG+EGIGTGW T PN+NPR+IV N+KR++ + +PM PWYK F
Sbjct: 821 IEPTWYMPIIPMVLVNGSEGIGTGWSTYTPNYNPRDIVANLKRLLNDDPIVPMDPWYKGF 880
Query: 720 KGEID----YCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTL 763
KG + + ++G I +D KL I+EL V +WT DYK+ L
Sbjct: 881 KGSFEKTTTKAAGVTYTISGIIEAANDTKLIISELPVRRWTLDYKEFL 928
Score = 50.4 bits (119), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 29/140 (20%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL-REKDKIHP 909
DY+YLL M +LT+E+ +L+ ++D+ + E+ L K P LW DLDAL +E D +
Sbjct: 1135 DYEYLLSMAIGTLTLEKVKQLIAQKDNLVNEVERLSKTDPKSLWVKDLDALEKELDVLDA 1194
Query: 910 -CPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAPPPTKASPVKKKKPAAKRP 968
R LA ++ T+ + +KA+P K++P K+
Sbjct: 1195 ELKAAEEKRRLAREKSTKDGKA----------------------SKAAP--KRQP--KKT 1228
Query: 969 APKSDSSDLSDSDGDSDFAS 988
A KS ++L+ SD D D+ +
Sbjct: 1229 AAKSQKANLAGSD-DEDYVA 1247
>gi|5121|emb|CAA27857.1| unnamed protein product [Schizosaccharomyces pombe]
Length = 1431
Score = 618 bits (1593), Expect = e-173, Method: Compositional matrix adjust.
Identities = 318/643 (49%), Positives = 406/643 (63%), Gaps = 111/643 (17%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQ+ + EH+L RPDTYIGS+EP T MW+ + E N ++ + +TYVPGLYKIFDEI+VNA
Sbjct: 24 YQRLTPREHVLRRPDTYIGSIEPTTSEMWVFDSEKNKLDYKAVTYVPGLYKIFDEIIVNA 83
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP MN +K+T++ E N IS++NNGKGIP+ H EK+++P +IFG+LLTSSNY
Sbjct: 84 ADNKVRDPNMNTLKVTLDPEANVISIYNNGKGIPIEIHDKEKIYIPELIFGNLLTSSNY- 142
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
+D + KVTGGRNGYGAKLCNIFS++FVVET+ E
Sbjct: 143 ------------------------DDNQKKVTGGRNGYGAKLCNIFSTEFVVETADKERM 178
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
K +KQ W DNMS+ + P I S K D++TKITF PDL KF M +D DMV +I RR YD
Sbjct: 179 KKYKQTWYDNMSRKSEPVITSLKKPDEYTKITFKPDLAKFGMDKIDDDMVSIIKRRIYDM 238
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDE-DGDPVKIIYENVNPRWEVAIAPSDR 333
A + ++ KV+LN E++ + F+ YV++Y + D +P ++IYE+VN RW+VA A SD
Sbjct: 239 AGTVRETKVYLNNERISISGFKKYVEMYLASDTKPDEEPPRVIYEHVNDRWDVAFAVSDG 298
Query: 334 GFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNN 393
F+QVSFVN+I+T +GG HV+ V + IV I EVVKK+NK
Sbjct: 299 QFKQVSFVNNISTIRGGTHVNYVANKIVDAIDEVVKKENKK------------------- 339
Query: 394 KLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGST 453
+K FQ+KN++ +F+NC I NP+FDSQTKE +T + +FGS
Sbjct: 340 -----------------APVKAFQIKNYVQVFVNCQIENPSFDSQTKETLTTKVSAFGSQ 382
Query: 454 C--------------------------------------------VPKLEDANDAGTKNS 469
C + KLEDAN AGTK S
Sbjct: 383 CTLSDKFLKAIKKSSVVEEVLKFATAKADQQLSKGDGGLRSRITGLTKLEDANKAGTKES 442
Query: 470 IDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVK 529
C LILTEGDSAKSLAVSGL VVGRD YGVFPLRGKLLNVREA+H QIL N EI + K
Sbjct: 443 HKCVLILTEGDSAKSLAVSGLSVVGRDYYGVFPLRGKLLNVREASHSQILNNKEIQAIKK 502
Query: 530 ILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLE 588
I+G + K YT D+K LRYG LMIMTDQD DGSHIKGLIIN++ ++P+LL++P FL
Sbjct: 503 IMGFTHKKTYT---DVKGLRYGHLMIMTDQDHDGSHIKGLIINYLESSYPSLLQIPGFLI 559
Query: 589 EFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+FITPIIK T+ + +FY+LPE+E WKE N +KIKYYK
Sbjct: 560 QFITPIIKCTRGNQVQAFYTLPEYEYWKEANNNGRGWKIKYYK 602
Score = 129 bits (325), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 79/113 (69%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE+Y+PI+PMVLVNGAEGIGTGW T IPN+NP++I N++ M+ GE M PWY+ F
Sbjct: 812 IEPEYYVPILPMVLVNGAEGIGTGWSTFIPNYNPKDITANLRHMLNGEPLEIMTPWYRGF 871
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
+G I R+ ++G I + ++K+EITEL + WT D K+ L+ L G EK
Sbjct: 872 RGSITKVAPDRYKISGIINQIGENKVEITELPIRFWTQDMKEYLEAGLVGTEK 924
Score = 71.6 bits (174), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 57/89 (64%), Gaps = 4/89 (4%)
Query: 813 LAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELL 872
++KP+K L E + A E++++G +Q+E D D Y+YLL M WSLT ER ELL
Sbjct: 1060 ISKPKKG--HLVDLEVENALAEEEQSGDVSQDE-DSDA-YNYLLSMPLWSLTYERYVELL 1115
Query: 873 KKRDDKMTELNILKKKAPTDLWSDDLDAL 901
KK+D+ M EL+ L KK P +LW DLDA
Sbjct: 1116 KKKDEVMAELDALIKKTPKELWLHDLDAF 1144
>gi|403158494|ref|XP_003307791.2| DNA topoisomerase II [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375163841|gb|EFP74785.2| DNA topoisomerase II [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1613
Score = 614 bits (1583), Expect = e-172, Method: Compositional matrix adjust.
Identities = 327/682 (47%), Positives = 421/682 (61%), Gaps = 136/682 (19%)
Query: 17 NGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERR 76
NGP+ KK A++ YQK SQLEH+L RPDTYIGSVE I + MW+ ++E M +
Sbjct: 97 NGPAGSKKKTASET-----YQKLSQLEHVLKRPDTYIGSVEAIRQFMWIFDKEKKTMVNK 151
Query: 77 EITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDE 136
EI++VPGLYKI DEILVNA DNKQRD M+ +K+T++ E N ISV NNGKGIP+ H+ E
Sbjct: 152 EISFVPGLYKIVDEILVNAADNKQRDDSMDTLKVTIDSEKNIISVMNNGKGIPIEIHETE 211
Query: 137 KMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAK 196
++++P +IFGHLL SN++D EE K TGGRNGYGAK
Sbjct: 212 QIYIPELIFGHLLAGSNFDD-------------------------EEKKTTGGRNGYGAK 246
Query: 197 LCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFK 255
L NI+S++F+VE + + K +KQ++K+NMS P+I K +++TKI+F PDL KF
Sbjct: 247 LANIYSTEFIVEAADKQTAKKYKQIFKNNMSVKEKPKITDNKKGEEYTKISFKPDLVKFN 306
Query: 256 MTS---LDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDED--- 309
+ + L DM LI++R YD A + ++VKV+LN E++ + F+ YV++YT +E
Sbjct: 307 LPAENGLAGDMEALISKRVYDMAGTLRNVKVWLNDERIKLTGFKKYVEMYTSGVNEAIKG 366
Query: 310 ---------GDP------VKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVD 354
G P IIYE RWE+A APSD FQQVSF NSIATTKGG HV+
Sbjct: 367 SAAKALEAPGSPGNGATKTPIIYEECGKRWEIAFAPSDGQFQQVSFCNSIATTKGGTHVE 426
Query: 355 AVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALK 414
+V +V++IIE V KK L LK
Sbjct: 427 HIVKQLVEKIIESVNKKKAKL------------------------------------TLK 450
Query: 415 PFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTCV------------------- 455
P+QV+NH+W+F+NCLI NPTFDSQTKENMTL FGS CV
Sbjct: 451 PYQVRNHLWVFVNCLIENPTFDSQTKENMTLGMSKFGSKCVMTEEFMKKVMKSGVIDSVM 510
Query: 456 -------------------------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGL 490
KLEDAN+AGT+ + DCTLILTEGDSAKSLAV+GL
Sbjct: 511 DFAKFKEEAALKKTDGSKRSRITGIVKLEDANNAGTRKAADCTLILTEGDSAKSLAVAGL 570
Query: 491 GVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRY 550
V+GRD YGVFPLRGKLLNVREA+ Q+L NAEI ++ +I+GLQ KKY + + +LRY
Sbjct: 571 SVIGRDNYGVFPLRGKLLNVREASGAQLLNNAEIQHIKQIMGLQQGKKYASRD---SLRY 627
Query: 551 GRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSL 609
G LMIMTDQD DGSHIKGLIINF+ + +P+LL +P FL EFITPI+K T+ +EELSF+++
Sbjct: 628 GSLMIMTDQDHDGSHIKGLIINFLDYFFPSLLEIPGFLVEFITPIVKVTRKKEELSFFTM 687
Query: 610 PEFEEWKEETTNWHTYKIKYYK 631
PEFE+WKEE + + KYYK
Sbjct: 688 PEFEKWKEENDDGRGWTSKYYK 709
Score = 124 bits (311), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 77/114 (67%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPEWYIPI+PMVLVNG+ GIGTGW + IPN+NP +IV+N++R + E PM PW++
Sbjct: 918 QIEPEWYIPILPMVLVNGSSGIGTGWSSDIPNYNPVDIVNNLRRRLANEPMEPMHPWFRG 977
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F G+I ++ V GE D+D +EITEL V W YK+ ++ ++ +K
Sbjct: 978 FTGQITSEAPGKYKVLGEWDQPDEDTIEITELPVRVWNQSYKEQIEAWINSTDK 1031
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL-REKDKIHP 909
D+DYLLGM LT E+ +LL +RDDK EL IL +K DLW DLD +E +I
Sbjct: 1203 DFDYLLGMAISRLTAEQVAKLLAERDDKEKELQILLEKTAEDLWHADLDLFEQEWRRIMT 1262
Query: 910 CPGGNRTRGLALKRQTRYQPSN 931
+R + + ++PSN
Sbjct: 1263 SDNDSRRASIKKVKPLGFKPSN 1284
>gi|110430606|gb|ABG73430.1| DNA topoisomerase II [Pleurotus ostreatus]
Length = 1571
Score = 613 bits (1582), Expect = e-172, Method: Compositional matrix adjust.
Identities = 318/669 (47%), Positives = 415/669 (62%), Gaps = 120/669 (17%)
Query: 19 PSP-KKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERRE 77
P P + K PA K + + YQK SQLEHIL RPD+YIGS+E IT+ MW+ + + M RE
Sbjct: 88 PLPGQNKGPAKKKTASETYQKLSQLEHILKRPDSYIGSIETITQAMWIFDADAKRMVHRE 147
Query: 78 ITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEK 137
+ YVPG +KI DEILVNA DNK DP M+ +K+T++ E TISV+NNGKGIPV H EK
Sbjct: 148 VKYVPGFFKIVDEILVNAADNKVNDPTMDALKVTIDIENCTISVYNNGKGIPVEMHTTEK 207
Query: 138 MFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKL 197
M++P +IFGHLL+SSNY +D+E K+TGGRNGYGAKL
Sbjct: 208 MYIPELIFGHLLSSSNY-------------------------DDDEKKLTGGRNGYGAKL 242
Query: 198 CNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKM 256
NI+S +F +ET+ K + Q W N+++V +I S+ +++T++TF P+LT+F M
Sbjct: 243 ANIYSLEFTIETADKVNGKKYSQTWTKNVTQVGKAKITKNSRNEEYTRVTFKPELTRFGM 302
Query: 257 TSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD-----RQDEDGD 311
T +D D L+ +R YD A + KDVKV+LNGE+L +K F+ YV++Y + ++ G
Sbjct: 303 THIDPDTAGLLRKRVYDMAGTVKDVKVYLNGERLKIKTFKQYVEMYIEAATAGAKENSGG 362
Query: 312 PVK----IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEV 367
+ +IYE ++PRWEVA A SD FQQVSF NSIAT +GG HV+ + D + K II
Sbjct: 363 AAQAKPTVIYEQISPRWEVAFATSDGTFQQVSFANSIATIEGGTHVNYIADQLSKSIIAH 422
Query: 368 VKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFIN 427
+ KKNK +KP QVKNH+WIF+N
Sbjct: 423 IAKKNK------------------------------------AATVKPAQVKNHMWIFVN 446
Query: 428 CLIVNPTFDSQTKENMTLQKGSFGS----------------------------------- 452
LI NPTFDSQTKE +TL G FGS
Sbjct: 447 ALIENPTFDSQTKETLTLPAGKFGSRPALSEEFMKKVQKSSIIDQVLNWAKFKADQQIKK 506
Query: 453 ---------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPL 503
T + KL DAN+AGTKN+ CTLILTEGDSAKSLAV+GL VVGRD +GVFPL
Sbjct: 507 TDGSKRNRLTGMAKLSDANNAGTKNAEKCTLILTEGDSAKSLAVAGLAVVGRDNFGVFPL 566
Query: 504 RGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDG 563
RGKLLNVREA H QI++N EI N+ KI+GLQ++K+YT V +LRYGRLMIMTDQD DG
Sbjct: 567 RGKLLNVREARHDQIMKNEEIQNIKKIMGLQHNKEYTNVS---SLRYGRLMIMTDQDHDG 623
Query: 564 SHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNW 622
SHIKGL+INF+ H +P+LL++P FL EF+TPI++ TK + +F+++PE+E W EET +
Sbjct: 624 SHIKGLLINFLDHFYPSLLKVPEFLVEFVTPIVRVTKGNQRKNFFTIPEYETWLEETPDS 683
Query: 623 HTYKIKYYK 631
+ KYYK
Sbjct: 684 KKWTAKYYK 692
Score = 135 bits (339), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 79/108 (73%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PIIPMVLVNGAEGIGTGW T IP +NP +IV NI+R++ GE+ +PM PW++ F
Sbjct: 902 VEPEWYLPIIPMVLVNGAEGIGTGWSTTIPCYNPVDIVANIRRLMNGEEVVPMLPWWRGF 961
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
KGE+ ++ V G L+D +EITEL + KWT ++K L+ ++
Sbjct: 962 KGEVKMVAKHKYDVTGIAKKLNDTTVEITELPIYKWTQNFKAELEGMI 1009
Score = 52.0 bits (123), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 847 DPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
D D+DYLLGM +SLT E+ +L ++ ++K EL L +K P+++W++DLD E
Sbjct: 1181 DSATDFDYLLGMAIYSLTKEKIGKLRQQANEKELELMALLEKKPSEMWNEDLDRFLE 1237
>gi|58258575|ref|XP_566700.1| DNA topoisomerase II [Cryptococcus neoformans var. neoformans
JEC21]
gi|134106673|ref|XP_778347.1| hypothetical protein CNBA3470 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50261050|gb|EAL23700.1| hypothetical protein CNBA3470 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57222837|gb|AAW40881.1| DNA topoisomerase II, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1272
Score = 613 bits (1580), Expect = e-172, Method: Compositional matrix adjust.
Identities = 320/669 (47%), Positives = 416/669 (62%), Gaps = 119/669 (17%)
Query: 18 GPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERRE 77
G K P + + ++YQK SQ EH+L RPDTYIGSVE IT+ MW++N ET M R
Sbjct: 94 GTESSAKAPTSNKNASEVYQKLSQREHVLKRPDTYIGSVEAITQPMWILNPETKTMVHRP 153
Query: 78 ITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEK 137
IT+VPG KIFDEILVNA DNK DP M+ IK+ +++E N ISV+NNG+GIPV H E
Sbjct: 154 ITFVPGFLKIFDEILVNASDNKINDPTMDSIKVVIDREKNAISVYNNGRGIPVEMHTKEG 213
Query: 138 MFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKL 197
+ +P +IFGHLL SN ++D++ K+TGGRNGYGAKL
Sbjct: 214 VMIPELIFGHLLAGSN-------------------------FDDDQKKLTGGRNGYGAKL 248
Query: 198 CNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKM 256
NI+S +F+VET+ K +KQ++ +NMSK +P+I K +++TKITF PDL +F M
Sbjct: 249 ANIYSHEFIVETADKVNSKKYKQIFSNNMSKKGTPKITDNKKGEEWTKITFKPDLERFGM 308
Query: 257 TSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD------RQDEDG 310
+D D L+ +R YD A + KDVKVFLN E++ VKNF+ YV++Y + + G
Sbjct: 309 NGIDDDTNALLMKRVYDMAGTVKDVKVFLNDERIKVKNFKQYVEMYLNASTTATSEAAGG 368
Query: 311 DPVK---IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEV 367
V IIYE N RWEVA A SD F+QVSF NSIATTKGG HVD + + ++++
Sbjct: 369 AAVTKPPIIYEVANKRWEVAFALSDGEFKQVSFTNSIATTKGGTHVDMIATQLANKLMDQ 428
Query: 368 VKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFIN 427
+KKKNK +KPFQ+KNH+WIF+N
Sbjct: 429 IKKKNK------------------------------------AAPVKPFQIKNHMWIFVN 452
Query: 428 CLIVNPTFDSQTKENMTLQKGSFGSTC--------------------------------- 454
LI NP FDSQTKEN+TL+ +FGS C
Sbjct: 453 ALIENPAFDSQTKENLTLKSSAFGSKCELSEEFIKKVAKTGIIDNVLNWARFKQDQILKK 512
Query: 455 -----------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPL 503
+ KLEDAN+AG +NS +CTLILTEGDSAK+LAVSGL VVGRD+YGVFPL
Sbjct: 513 TDGTKRSRISGIVKLEDANNAGGRNSKNCTLILTEGDSAKALAVSGLAVVGRDEYGVFPL 572
Query: 504 RGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDG 563
RGKLLNVREA H QI++N EI ++ +ILGL++++ Y T + +LRYG LMIMTDQD DG
Sbjct: 573 RGKLLNVREAGHDQIVKNVEIQHIKQILGLKHNQDYATAD---SLRYGHLMIMTDQDHDG 629
Query: 564 SHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNW 622
SHIKGLIINF+ H +P+LLR+P FL EFITPI+K K ++E+SFY++P++EEWK + N
Sbjct: 630 SHIKGLIINFLDHFYPSLLRIPNFLVEFITPIVKVWKGKKEISFYTMPQYEEWKAQNNNG 689
Query: 623 HTYKIKYYK 631
++ KYYK
Sbjct: 690 RGWESKYYK 698
Score = 135 bits (341), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 85/113 (75%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP++++P +PMVL+NGA+GIGTGW T IPN+NP +IV+N++RM+RGE+P M PW++ F
Sbjct: 908 IEPDYFMPTVPMVLINGADGIGTGWSTAIPNYNPVDIVENLRRMMRGEEPEKMTPWFRGF 967
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KG I+ ++ V+G I ++D LEITEL + +WT D+K+ L+ + G +K
Sbjct: 968 KGFIERIDQDKYKVSGIIEKINDTTLEITELPIRRWTQDFKEMLEEMTTGTDK 1020
Score = 56.6 bits (135), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 33/49 (67%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
DYDYLLGM WSLT E+ +LL +RD K EL L K +P ++W DLD
Sbjct: 1184 DYDYLLGMAIWSLTSEKVEKLLAERDAKEQELIELLKLSPNNIWDRDLD 1232
>gi|390603939|gb|EIN13330.1| type II DNA topoisomerase [Punctularia strigosozonata HHB-11173
SS5]
Length = 1559
Score = 613 bits (1580), Expect = e-172, Method: Compositional matrix adjust.
Identities = 313/666 (46%), Positives = 414/666 (62%), Gaps = 125/666 (18%)
Query: 21 PKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITY 80
PKK A++M YQK SQLEHIL RPD+YIGSVE + + MW+ + ++N M RE+ +
Sbjct: 76 PKKNKTASEM-----YQKLSQLEHILKRPDSYIGSVEAVRQAMWVYDSDSNRMVNREVKF 130
Query: 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
VPG +KI DEILVNA DNK DP M+ +K+ ++ E TISV+NNGKGIP+ H EK+++
Sbjct: 131 VPGFFKIVDEILVNAADNKINDPNMDTLKVNIDVEEGTISVYNNGKGIPIEIHSKEKIYI 190
Query: 141 PTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNI 200
P +IF GHLL+SSNY+D+E K+TGGRNGYGAKL NI
Sbjct: 191 PELIF-------------------------GHLLSSSNYDDDEKKLTGGRNGYGAKLANI 225
Query: 201 FSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLD 260
+S +F VET+ K +KQ W DNM KV +I SG+++ +TK+TF PD +F M +D
Sbjct: 226 YSHEFTVETADKNMGKKYKQTWTDNMGKVGKAKITSGNQE-YTKVTFKPDFERFGMDGID 284
Query: 261 KDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVK------ 314
D + L+ RR YD A + K+VKV+LN ++L +KNF+ YV++Y + E
Sbjct: 285 DDTLSLLKRRVYDLAGTVKNVKVYLNDKQLKIKNFKQYVEMYLNSVAEHASETSGGAAQA 344
Query: 315 ---IIYENVNPRWEVAIAPSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKK 370
+IYE +NPR+EVA A SD G FQQVSF NSIATTKGGRHVD V D I K ++ ++K
Sbjct: 345 KSTVIYEQINPRFEVAFALSDTGNFQQVSFANSIATTKGGRHVDLVADQIAKNLLTQIEK 404
Query: 371 KNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLI 430
KNK G +KP +KNH+WIF+N L+
Sbjct: 405 KNK------------------------------------GAKVKPATIKNHMWIFVNALV 428
Query: 431 VNPTFDSQTKENMTLQKGSFGS-------------------------------------- 452
NPTFDSQTK+ +TL FG+
Sbjct: 429 ENPTFDSQTKDTLTLAANKFGTKPVVSEDFMKKIAKSSIIDHVLNWAQFQADKQAKKTDG 488
Query: 453 ------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGK 506
T +PKL DAN+AG +N+ DCTLILTEGDSAK+LAV+GL VVGRD +GVFPLRGK
Sbjct: 489 SKRSRLTGLPKLSDANNAGGRNAKDCTLILTEGDSAKALAVAGLSVVGRDNFGVFPLRGK 548
Query: 507 LLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHI 566
LLNVREA H Q+++N EI N+ KI+GLQ++K+Y D +LRYG+LMIMTDQD DGSHI
Sbjct: 549 LLNVREARHDQVMKNEEIQNIKKIMGLQHNKEYA---DRSSLRYGQLMIMTDQDHDGSHI 605
Query: 567 KGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTY 625
KGL+IN++ H +P+LL++P FL EF+TPI++ TK +E F+++PE+E W E T + H +
Sbjct: 606 KGLLINYLDHFYPSLLKIPNFLVEFVTPIVRVTKGKERKDFFTIPEYERWLENTPDSHKW 665
Query: 626 KIKYYK 631
+ KYYK
Sbjct: 666 ESKYYK 671
Score = 139 bits (350), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 83/108 (76%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+P++P+VL+NGAEGIGTGW T IP++NP +IV+NI+R++RGE+ +PM PW++ F
Sbjct: 881 IEPEWYMPVLPLVLINGAEGIGTGWSTSIPSYNPVDIVENIRRLMRGEEMVPMMPWWRGF 940
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
+G + ++RF V G I D+ +EITEL + KWT +YK L+ ++
Sbjct: 941 RGTVKKVSENRFDVTGVIRKKDETTIEITELPIHKWTQNYKAELEAMI 988
Score = 50.8 bits (120), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 15/83 (18%)
Query: 822 QLERQERQA-AEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMT 880
+LE ER+A A G AGS DYDYLLGM ++LT E+ +L ++ DK
Sbjct: 1150 ELEEVEREAQATG----AGS----------DYDYLLGMPIYALTKEKIEKLRQQMGDKEA 1195
Query: 881 ELNILKKKAPTDLWSDDLDALRE 903
EL L ++ P ++W++DLD E
Sbjct: 1196 ELLTLLERTPIEIWNEDLDKFLE 1218
>gi|409051031|gb|EKM60507.1| hypothetical protein PHACADRAFT_83842 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1551
Score = 612 bits (1579), Expect = e-172, Method: Compositional matrix adjust.
Identities = 317/667 (47%), Positives = 416/667 (62%), Gaps = 119/667 (17%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
S K PA + + YQK +QLEHIL RPD+YIGSVE IT+ MW+ + ET M REIT
Sbjct: 80 SEKPAAPAKNKTASETYQKLTQLEHILKRPDSYIGSVEKITQPMWVWDSETKRMVNREIT 139
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
YVPG +KI DEILVNA DNK DP M+ IK+TV+ E NTISV+NNG+GIP+ H EK++
Sbjct: 140 YVPGFFKIVDEILVNAADNKINDPSMDTIKVTVDPENNTISVFNNGRGIPIEMHSTEKVY 199
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCN 199
+P +IFGHLL+SSNY +D+E K+TGGRNGYGAKL N
Sbjct: 200 IPELIFGHLLSSSNY-------------------------DDDEKKLTGGRNGYGAKLAN 234
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTS 258
I+S++F V+T+ + + Q W DNM K+ +I K+ K++ T++TF PDL +F M S
Sbjct: 235 IYSTEFTVDTADKNTAQRYVQTWTDNMGKMGKAKITKNSKKEEHTRVTFKPDLKRFGMDS 294
Query: 259 LDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR-----QDEDGDPV 313
+D+ + L+ +R YD A +TKDVKVFLN E++ VK F+ YV+LY + Q+E G
Sbjct: 295 IDEHALALLKKRVYDMAGTTKDVKVFLNDERIKVKGFKQYVELYLNSVAEQAQEESGGAA 354
Query: 314 KI----IYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVK 369
+ IYE ++ RWEVA A SD FQ V+F NSIATTKGG HV + D I K + ++
Sbjct: 355 LVKPTMIYETISSRWEVAFAVSDGTFQHVAFANSIATTKGGTHVTCIADQIAKNLAANIQ 414
Query: 370 KKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCL 429
KKNK G A+KP +K+H+WIF+N L
Sbjct: 415 KKNK------------------------------------GAAVKPAHIKSHMWIFVNAL 438
Query: 430 IVNPTFDSQTKENMTLQKGSFGS------------------------------------- 452
I NPTFDSQTKE +TL G FG+
Sbjct: 439 IENPTFDSQTKEQLTLPAGKFGTRPTLSEDFMKKVQKSSIIDQILNWANRKADKELKKTD 498
Query: 453 -------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRG 505
+ KL DAN+AGT+ + +CTLILTEGDSAKSLAV+GL V+GRD YGVFPLRG
Sbjct: 499 GKGRNRIKGLTKLSDANNAGTRGAQNCTLILTEGDSAKSLAVAGLSVIGRDNYGVFPLRG 558
Query: 506 KLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSH 565
KLLNVREA H QI++N EI N+ KILGLQ++K Y +D LRYG+LMIMTDQD DGSH
Sbjct: 559 KLLNVREAKHDQIMKNEEIQNIKKILGLQHNKDY---KDTNDLRYGQLMIMTDQDHDGSH 615
Query: 566 IKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHT 624
IKGLI+N++ H +P+LL++P FL EF+TPI++ TK ++++F+++PE+E+W E T + H
Sbjct: 616 IKGLILNYLDHFYPSLLKIPKFLVEFVTPIVRVTKGNQKINFFTIPEYEQWLENTPDSHK 675
Query: 625 YKIKYYK 631
+K KYYK
Sbjct: 676 WKSKYYK 682
Score = 139 bits (349), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 81/108 (75%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+P++P++LVNGAEGIGTGW T +P +NP +IV NI+R + GE+ +PM PW++ F
Sbjct: 892 IEPEWYMPVLPLILVNGAEGIGTGWSTNVPCYNPVDIVANIRRRMNGEEMVPMLPWWRGF 951
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
+G I GD ++ V G I +DD +EITEL + KWT +YK L+T++
Sbjct: 952 RGTIKKTGDHKYDVTGIINKIDDTTVEITELPIHKWTQNYKQELETMM 999
Score = 54.3 bits (129), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 76/164 (46%), Gaps = 15/164 (9%)
Query: 833 GEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTD 892
G++DE QE+ D DYDYLL M +SLT ER +L K+ DK EL L + P
Sbjct: 1157 GDEDE-----QEDNDGAHDYDYLLNMAIYSLTKERIEKLKKQAADKEAELLKLLELTPIQ 1211
Query: 893 LWSDDLDALREKDKIHPCPGGNRT--RGLALKRQTRYQPS-NRVLTSRDEPMVVSSGEDA 949
+W+ DLD E+ K+ +R G K+ R QP+ ++ + ED
Sbjct: 1212 MWNTDLDNFLEQWKMSSEAWNDRAIEPGQVAKKSKRKQPTLAAIMKKAAKKEKDEDDEDD 1271
Query: 950 PPPTKASPVKKK-----KPAAKRP--APKSDSSDLSDSDGDSDF 986
P KA K + KP K P AP +++ D D + D+
Sbjct: 1272 FKPGKAGASKSRKALDPKPVKKSPPTAPVVTKAEVKDEDSEDDY 1315
>gi|336364306|gb|EGN92666.1| hypothetical protein SERLA73DRAFT_172653 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1484
Score = 611 bits (1575), Expect = e-171, Method: Compositional matrix adjust.
Identities = 318/692 (45%), Positives = 425/692 (61%), Gaps = 126/692 (18%)
Query: 2 SSDESDFDPD----VQQNGNGPSPKKKTPAN---KMSVEKIYQKKSQLEHILLRPDTYIG 54
++DES D D + + GPS K T A K + + Y K SQLEHIL RPD+YIG
Sbjct: 59 NADESIMDVDDVMISEDDEAGPSQPKPTVAKNGKKKTASETYTKLSQLEHILKRPDSYIG 118
Query: 55 SVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQ 114
SVE IT+ +W + +T M RE+ YVPG +KI DEILVNA DNK D M+ +K+T++
Sbjct: 119 SVETITQALWTYDADTKRMVHRELKYVPGFFKIVDEILVNAADNKINDKTMDTLKVTIDV 178
Query: 115 ETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLL 174
+ +TISV+NNG+GIP+ H EKM++P +IF GHLL
Sbjct: 179 DNSTISVFNNGRGIPIEMHSTEKMYIPELIF-------------------------GHLL 213
Query: 175 TSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI 234
+SSNY+D+E K+TGGRNGYGAKL NI+S +F ++T+ + +KQ W +NMS V +I
Sbjct: 214 SSSNYDDDEKKLTGGRNGYGAKLANIYSHEFTIDTADKNSSQKYKQTWTNNMSNVGKAKI 273
Query: 235 KSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVK 293
SK +++T++TF PDL +F M S+D+D V L+ +R YD A + +DVKVFLN E+L +K
Sbjct: 274 TKNSKNEEYTRVTFRPDLKRFGMDSIDEDTVSLLKKRVYDMAGTIRDVKVFLNDERLKIK 333
Query: 294 NFQDYVKLYTDRQDEDGDPVK---------IIYENVNPRWEVAIAPSDRGFQQVSFVNSI 344
NF+ YV+LY + + +I+E V PRWEVA A SD FQQVSF NSI
Sbjct: 334 NFKQYVELYLNSVAAEAAEASGGAAQAKPTVIHEQVGPRWEVAFAVSDGSFQQVSFANSI 393
Query: 345 ATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDI 404
ATTKGG HV + D + K +I + KKNK
Sbjct: 394 ATTKGGTHVTLISDQLAKNLIAAITKKNK------------------------------- 422
Query: 405 GVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS------------ 452
+KP Q+KNH+WIF+N LI NPTFDSQTKE +TL G FG+
Sbjct: 423 -----AATVKPAQIKNHMWIFVNALIENPTFDSQTKETLTLPAGKFGTKPVLSEEFMKKV 477
Query: 453 --------------------------------TCVPKLEDANDAGTKNSIDCTLILTEGD 480
T +PKL DAN+AGT+N+ CTLILTEGD
Sbjct: 478 QKSTIIDNILNWAKFKADQQIKKTDGSKRNRLTGLPKLADANNAGTRNAEKCTLILTEGD 537
Query: 481 SAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYT 540
SAK+LAV+GLGVVGRD +GVFPLRGKLLNVREA H QI++N EI N+ KI+GLQ++K Y+
Sbjct: 538 SAKALAVAGLGVVGRDNFGVFPLRGKLLNVREAKHDQIMKNEEIQNIKKIMGLQHNKVYS 597
Query: 541 TVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATK 599
+ +LRYGRLMIMTDQD DGSHIKGL+INF+ H +P+LL++P FL EF+TPI++ +K
Sbjct: 598 GI---GSLRYGRLMIMTDQDHDGSHIKGLLINFLDHFFPSLLKIPNFLVEFVTPIVRVSK 654
Query: 600 AREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
++ + F+++PE+E+W E+T + H + KY+K
Sbjct: 655 GKQRIDFFTIPEYEQWVEDTPDAHKWDAKYFK 686
Score = 135 bits (339), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 81/108 (75%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE+Y+P+IP+VL+NGAEGIGTGW T IP +NP +IV+NI+RM+ GE+ +PM PW++ F
Sbjct: 896 IEPEYYLPVIPLVLINGAEGIGTGWSTSIPCYNPEDIVNNIRRMMAGEELVPMLPWWRGF 955
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
KG I GD ++ V G ++D +EITEL + KWT +YK L+ ++
Sbjct: 956 KGTIKKVGDYKYDVIGVARKINDTTVEITELPIHKWTQNYKAELEAMI 1003
Score = 58.2 bits (139), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 16/160 (10%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPC 910
DYDYLLGM WSLT E+ +LL++ +K EL IL ++ P +W++DLD + + +
Sbjct: 1170 DYDYLLGMAIWSLTSEKIEKLLQQAQEKEAELLILLERTPVKMWNEDLDMFMAEWQKNCE 1229
Query: 911 PGGNRT----RGLALKRQTRYQPSNRVLTSRDEPMVVSSGE-DAPPPTKASPVKKKKPAA 965
N++ G +KR+ + + L+ + +S + D K +P K +KPA
Sbjct: 1230 QWENKSLLDANGKRVKRKQATLETRKSLSGPGKKKAHASDDSDYDVKPKKAPAKPRKPAE 1289
Query: 966 KRPAPKSDSSDLSDSDGDSDF-----------ASRKKKTA 994
+ K+ ++ S + D AS K+KT+
Sbjct: 1290 PKATAKNATAGSSKVKKEEDIEVAPVIAKVQQASAKRKTS 1329
>gi|321251923|ref|XP_003192225.1| DNA topoisomerase II [Cryptococcus gattii WM276]
gi|317458693|gb|ADV20438.1| DNA topoisomerase II, putative [Cryptococcus gattii WM276]
Length = 1377
Score = 610 bits (1574), Expect = e-171, Method: Compositional matrix adjust.
Identities = 322/670 (48%), Positives = 416/670 (62%), Gaps = 120/670 (17%)
Query: 17 NGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERR 76
N S K +NK + E +YQK SQ EH+L RPDTYIGSVE IT+ MW++N ET M R
Sbjct: 93 NAESSVKAATSNKNASE-VYQKLSQREHVLKRPDTYIGSVEAITQPMWVLNPETKTMMHR 151
Query: 77 EITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDE 136
IT+VPG KIFDEILVNA DNK DP M+ IK+ +++E NT+SV+NNG+GIPV H E
Sbjct: 152 PITFVPGFLKIFDEILVNASDNKINDPTMDSIKVVIDREKNTVSVYNNGRGIPVEMHTKE 211
Query: 137 KMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAK 196
+ +P +IFGHLL SN ++D++ K+TGGRNGYGAK
Sbjct: 212 GVMIPELIFGHLLAGSN-------------------------FDDDQKKLTGGRNGYGAK 246
Query: 197 LCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFK 255
L NI+S +FVVET+ K +KQ++ +NMSK P+I K +++TKITF PDL +F
Sbjct: 247 LANIYSHEFVVETADKVNSKKYKQIFSNNMSKKGIPKITDNKKGEEWTKITFKPDLERFG 306
Query: 256 MTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVK- 314
M +D D L+ +R YD A + KDVKVFLN E++ VKNF+ YV++Y +
Sbjct: 307 MDGIDDDTNALLMKRVYDMAGTVKDVKVFLNDERIKVKNFKQYVEMYLNASTTAASEAAG 366
Query: 315 --------IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIE 366
IIYE N RWEVA A SD F+QVSF NSIATTKGG HVD + + ++++
Sbjct: 367 GAAVTKPPIIYEVANRRWEVAFALSDGEFKQVSFTNSIATTKGGTHVDMIATQLANKLMD 426
Query: 367 VVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFI 426
+KKKNK +KPFQ+KNH+WIF+
Sbjct: 427 QIKKKNK------------------------------------AAPVKPFQIKNHMWIFV 450
Query: 427 NCLIVNPTFDSQTKENMTLQKGSFGSTC-------------------------------- 454
N LI NP FDSQTKEN+TL+ +FGS C
Sbjct: 451 NALIENPAFDSQTKENLTLKSSAFGSKCELSEEFIKKVAKTGIIDNVLNWARFKQDQILK 510
Query: 455 ------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFP 502
+ KLEDAN+AG +NS +CTLILTEGDSAK+LAVSGL VVGRD+YGVFP
Sbjct: 511 KTDGTKRSRISGIVKLEDANNAGGRNSKNCTLILTEGDSAKALAVSGLAVVGRDEYGVFP 570
Query: 503 LRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQD 562
LRGKLLNVREA H QI++N EI ++ +ILGL++++ Y +V+ +LRYG LMIMTDQD D
Sbjct: 571 LRGKLLNVREAGHDQIVKNVEIQHIKQILGLKHNQDYASVD---SLRYGHLMIMTDQDHD 627
Query: 563 GSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN 621
GSHIKGLIINF+ H +P+LLR+P FL EFITPI+K K ++E+SFY++P++EEWK + N
Sbjct: 628 GSHIKGLIINFLDHFYPSLLRIPNFLVEFITPIVKVWKGKKEISFYTMPQYEEWKAQNNN 687
Query: 622 WHTYKIKYYK 631
++ KYYK
Sbjct: 688 GRGWESKYYK 697
Score = 138 bits (348), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 86/113 (76%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP++++P +PMVL+NGA+GIGTGW T IPN+NP +IV+N++RM+RGE+P M PW++ F
Sbjct: 907 IEPDYFMPTVPMVLINGADGIGTGWSTAIPNYNPVDIVENLRRMMRGEEPEEMTPWFRGF 966
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KG I+ ++ V+G+I ++D LEITEL + +WT D+K+ L+ + G +K
Sbjct: 967 KGSIERIDQDKYKVSGKIEKINDTTLEITELPIRRWTQDFKEMLEEMTTGTDK 1019
Score = 58.9 bits (141), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 33/49 (67%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
DYDYLLGM WSLT E+ +LL +RD K EL L K +P D+W DLD
Sbjct: 1182 DYDYLLGMAIWSLTSEKVEKLLTERDAKEQELIELLKLSPNDIWDQDLD 1230
>gi|213407866|ref|XP_002174704.1| DNA topoisomerase [Schizosaccharomyces japonicus yFS275]
gi|212002751|gb|EEB08411.1| DNA topoisomerase [Schizosaccharomyces japonicus yFS275]
Length = 1499
Score = 609 bits (1571), Expect = e-171, Method: Compositional matrix adjust.
Identities = 323/663 (48%), Positives = 405/663 (61%), Gaps = 115/663 (17%)
Query: 19 PSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREI 78
P P + N S + YQ+ S EH+L RPDTYIGSVE MW+ + E N M +E+
Sbjct: 57 PEPLAEVNKNVPSASQQYQRISPREHVLRRPDTYIGSVEKTEMPMWVYDSEQNKMVYKEV 116
Query: 79 TYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKM 138
VPGLYKIFDEI+VNA DNK RDP MN +K+ ++ E N ISV+NNGKGIPV H+ E +
Sbjct: 117 NIVPGLYKIFDEIIVNAADNKVRDPTMNTLKVEIDPEANVISVYNNGKGIPVEIHEKEGI 176
Query: 139 FVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLC 198
++P +IFGHLLTSSNY +D + KVTGGRNGYGAKLC
Sbjct: 177 YIPELIFGHLLTSSNY-------------------------DDNQKKVTGGRNGYGAKLC 211
Query: 199 NIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMT 257
NIFS +F VET+ K +KQ W +NMSK + P++ + D++TKITF PDL KF MT
Sbjct: 212 NIFSHEFTVETADKLRMKKYKQTWTENMSKKSEPKVVDMKRADEYTKITFKPDLAKFGMT 271
Query: 258 SLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT----DRQDEDGDPV 313
LD D+V ++ RR YD A + D+KVFLN E++ +KNF+ YV+L+ +R D P
Sbjct: 272 KLDDDLVSVVKRRVYDMAGTIPDIKVFLNNERINIKNFRKYVELFVSSLRNRTDSTKPPT 331
Query: 314 KIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNK 373
I+Y+ N RWEVA SD F+ +SFVNSIATT+GG HV+ V D IVK++ KKNK
Sbjct: 332 -ILYDRPNERWEVAYTLSDGQFKNISFVNSIATTRGGTHVNYVADEIVKRVQAEFSKKNK 390
Query: 374 DLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNP 433
ALKPFQ+KN++W+FINC IVNP
Sbjct: 391 H------------------------------------AALKPFQIKNNLWLFINCQIVNP 414
Query: 434 TFDSQTKENMTLQKGSFGSTC--------------------------------------- 454
+FDSQTKE +T + +FGS C
Sbjct: 415 SFDSQTKETLTTKPSAFGSKCDLSDTFFKQLIKSEIIAVCSELAKAKADQQMSKTDGKSR 474
Query: 455 -----VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLN 509
+PKL DAN AGT+ S CTLILTEGDSAK+L VSGLGVVGRD YGV+PLRGKLLN
Sbjct: 475 SRITGLPKLSDANKAGTRESKKCTLILTEGDSAKTLVVSGLGVVGRDYYGVYPLRGKLLN 534
Query: 510 VREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGL 569
VREA++ QI+ N EI + KILGL ++KKYT+ + LRYG LMIMTDQD DGSHIKGL
Sbjct: 535 VREASYNQIINNKEIQAIKKILGLAHNKKYTSTDG---LRYGHLMIMTDQDHDGSHIKGL 591
Query: 570 IINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIK 628
IIN++ +P+LL L FL EFITPI++ K RE +SF++LPEF+ WKE N + IK
Sbjct: 592 IINYLESTYPSLLHLEGFLIEFITPIVRCRKGREIISFFTLPEFDYWKENNNNGRGWSIK 651
Query: 629 YYK 631
YYK
Sbjct: 652 YYK 654
Score = 127 bits (320), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 77/108 (71%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP++Y+PI+PM+LVNGAEGIGTGW T IPN NP ++V NI+ +I+ E PM PWY+ F
Sbjct: 864 VEPDYYVPIVPMLLVNGAEGIGTGWSTFIPNFNPSDLVKNIRHLIKNEPLEPMHPWYRGF 923
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
KG I R+ V+G I + DD ++ITEL V WT D K+ L++L+
Sbjct: 924 KGTIQQMTPDRYKVSGIIEQVSDDTVDITELPVRLWTQDMKEYLESLM 971
Score = 48.5 bits (114), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 24/130 (18%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPC 910
D+ YLL M +SLT ER LLKK+ + EL+ L K P D+W DL+ ++
Sbjct: 1148 DFTYLLNMPVYSLTYERYMNLLKKKGECEEELDKLMKITPKDIWLTDLEGFEKE------ 1201
Query: 911 PGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAPPPTKASPVKKKKPAAKR-PA 969
+ L +TR+Q + +AP K K++PA K+ PA
Sbjct: 1202 ----WEKELDEDAKTRFQSG-------------PNSSNAPAIRKKRTTTKREPAVKKEPA 1244
Query: 970 PKSDSSDLSD 979
K ++S SD
Sbjct: 1245 VKKEASSKSD 1254
>gi|392572043|gb|EIW65215.1| type II DNA topoisomerase [Trametes versicolor FP-101664 SS1]
Length = 1536
Score = 609 bits (1571), Expect = e-171, Method: Compositional matrix adjust.
Identities = 310/666 (46%), Positives = 416/666 (62%), Gaps = 119/666 (17%)
Query: 21 PKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITY 80
P T K + ++Y K SQLEHIL RPD+YIGSVE IT+ MW + E M REI Y
Sbjct: 84 PSAPTNGKKKTASEMYTKLSQLEHILKRPDSYIGSVETITQMMWTWDSENKRMVHREIKY 143
Query: 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
VPG +KI DEILVNA DNK D M+ IK+ ++ E NTI+V+NNG+GIP+ HK EK+++
Sbjct: 144 VPGFFKIVDEILVNAADNKINDASMDTIKVNIDVENNTITVYNNGRGIPIEMHKKEKIYI 203
Query: 141 PTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNI 200
P +IFGHLL+SSNY +D+E K+TGGRNGYGAKL NI
Sbjct: 204 PELIFGHLLSSSNY-------------------------DDDEKKLTGGRNGYGAKLANI 238
Query: 201 FSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSL 259
+S++F V+T+ + + Q W +NMSK+ +I K+G +++T++TF PDL +F M S+
Sbjct: 239 YSTEFTVDTADKNTSQKYSQTWTENMSKIGKAKITKNGRGEEYTRVTFKPDLKRFGMDSI 298
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPV------ 313
D+D V L+ +R +D A +TKDVKVFLN E+L +KNF+ YV+L+ + ++ V
Sbjct: 299 DEDTVSLLKKRVHDLAGTTKDVKVFLNDERLKIKNFKQYVELFINSAAQEAADVSGGAAQ 358
Query: 314 ---KIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKK 370
IIYE + RWEVA A SD FQQVSF NSI+T+KGG HV+ + D I K +I + K
Sbjct: 359 VKPSIIYEPIGTRWEVAFAVSDGSFQQVSFANSISTSKGGTHVNYMADQIAKALITSISK 418
Query: 371 KNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLI 430
KNK +KP Q+KNH+WIF+N LI
Sbjct: 419 KNK------------------------------------AATIKPAQIKNHMWIFVNALI 442
Query: 431 VNPTFDSQTKENMTLQKGSFGS-------------------------------------- 452
NPTFDSQTKE +TL FG+
Sbjct: 443 ENPTFDSQTKETLTLPASKFGTRPTLSEDFMKKVAKSSIVDHVLNWAKFKADQQLKKTDG 502
Query: 453 ------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGK 506
T + KL DAN+AGT+ + DCTLILTEGDSA++LA++GLGVVGRD +GVFPLRGK
Sbjct: 503 NRRTRLTGMTKLSDANNAGTRKAGDCTLILTEGDSARALAIAGLGVVGRDNFGVFPLRGK 562
Query: 507 LLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHI 566
LLNVR+A H QI++N EI N+ KI+GLQ++K+YT D+ +LRYGRLM+MTDQD DGSHI
Sbjct: 563 LLNVRDAKHDQIMKNEEIQNIKKIMGLQHNKEYT---DVNSLRYGRLMLMTDQDHDGSHI 619
Query: 567 KGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTY 625
KGL+IN++ H +P+LL+LP FL EFITP+++ K + ++FY++PE+E W E+T + H +
Sbjct: 620 KGLLINYLDHFYPSLLKLPKFLVEFITPVVRVWKGKTIINFYTIPEYEMWLEDTPDSHKW 679
Query: 626 KIKYYK 631
+ KYYK
Sbjct: 680 EHKYYK 685
Score = 136 bits (342), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/110 (51%), Positives = 81/110 (73%), Gaps = 1/110 (0%)
Query: 658 GR-IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWY 716
GR +EPEWY+P+IP+VLVNGAEGIGTGW T +P+ NP +IV N++R++ GE+ +PM PW+
Sbjct: 892 GRSVEPEWYMPVIPLVLVNGAEGIGTGWSTSVPSFNPEDIVANLRRLMNGEEQVPMLPWW 951
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
+ F G I GD+++ V G I +DD +EITEL + KWT +K L+ +
Sbjct: 952 RGFSGAIKKTGDNKYDVLGTITKVDDSTIEITELPIHKWTQTFKAELEVM 1001
Score = 50.4 bits (119), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
DYDYLLGM WSLT E+ ++LL++ +K TEL L + P +W DLDA ++
Sbjct: 1171 DYDYLLGMAIWSLTKEKIDKLLQQAKEKETELLTLLELTPIQIWQTDLDAFLDQ 1224
>gi|387593505|gb|EIJ88529.1| DNA topoisomerase II [Nematocida parisii ERTm3]
gi|387597159|gb|EIJ94779.1| DNA topoisomerase II [Nematocida parisii ERTm1]
Length = 1182
Score = 608 bits (1569), Expect = e-171, Method: Compositional matrix adjust.
Identities = 317/647 (48%), Positives = 412/647 (63%), Gaps = 117/647 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+VE+IYQKK+ +EH+LLRPDTYIGSV+P T TM++ + M R+E+TY PGLYKIFDE
Sbjct: 7 TVEEIYQKKTPIEHVLLRPDTYIGSVQPETRTMYVWCADKMKMVRKEVTYTPGLYKIFDE 66
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNK RD +M I+I V+ + +TISV N+G+GIPVV H E ++VP +IF
Sbjct: 67 ILVNAADNKTRDKRMKEIRIDVDIKNSTISVSNDGQGIPVVIHAKENVYVPELIF----- 121
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
GHLLTSSNY+D E K+TGGRNGYGAKLCNIFS+KFV+ET+
Sbjct: 122 --------------------GHLLTSSNYDDAEKKMTGGRNGYGAKLCNIFSTKFVIETA 161
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
+ KK F+QV+ +NM K PEI+ + +++T++TF PDL KF M +D D + LI +R
Sbjct: 162 DKKNKKKFRQVYTNNMLKKEEPEIEPFTGEEYTRVTFQPDLAKFSMKRIDDDFMSLIMKR 221
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAP 330
YD A + D+ V+ NGEK+PV NF++Y+KL+ D + V+I+YE+ RWE+A
Sbjct: 222 VYDLAGTVGDISVYFNGEKIPVSNFREYIKLFFD------NDVEIVYES-KGRWEIAYVL 274
Query: 331 SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNV 390
D FQ VSFVN I+T +GG HV+ + D IV ++E KK K
Sbjct: 275 GDEQFQHVSFVNRISTPRGGTHVNYIADQIVSAVVEQAKKVEK----------------- 317
Query: 391 KNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSF 450
G+ ++P QVK +I++F+NCLI NP FDSQTKE +TL++ SF
Sbjct: 318 -------------------GLVVRPIQVKANIFLFLNCLIENPAFDSQTKETLTLKQSSF 358
Query: 451 GST--------------------------------------------CVPKLEDANDAGT 466
GS +PKL+DAN+AGT
Sbjct: 359 GSKHTLGSKFISEIMKSGIVEKSAYAARAKQTQQLKKTDGHKTSKLRGIPKLDDANNAGT 418
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
+ + CTLILTEGDSAKSLAVSGL V+GRD YGVFPLRGKLLNVREATHKQ++EN EINN
Sbjct: 419 RYAAQCTLILTEGDSAKSLAVSGLSVIGRDNYGVFPLRGKLLNVREATHKQLMENMEINN 478
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ KI+GLQ+ K+Y T E +LRYG LMIMTDQD DGSHIKGLIIN + H +P+LL++
Sbjct: 479 IKKIMGLQHGKEYATTE---SLRYGHLMIMTDQDHDGSHIKGLIINMLDHFFPSLLKIKG 535
Query: 586 FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHT-YKIKYYK 631
FL+EFITPI++ATK F+++PEFE W E + +KIKYYK
Sbjct: 536 FLQEFITPIVRATKGSMSRDFFTIPEFESWCETSEGRENGWKIKYYK 582
Score = 146 bits (368), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/327 (33%), Positives = 151/327 (46%), Gaps = 58/327 (17%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP+ YIPIIPMVLVNG+EGIGTGW T IP++NP EIVDN+KRMI G +P M PWYK F
Sbjct: 792 VEPDMYIPIIPMVLVNGSEGIGTGWSTCIPSYNPIEIVDNVKRMINGHEPEDMMPWYKGF 851
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAE-KDEVHPG 778
GE + G ++ G L+ K+ I EL +G WT +YKD L+TL+ + KD
Sbjct: 852 AGECEDLGGGKYRTTGTFE-LETGKINILELPIGTWTQNYKDFLETLIESGDIKDFREYN 910
Query: 779 PGRKSHPRPI-------APKSYKIDDD-------------------SEEEEIEEVF---- 808
K + I PK +K+ S E ++E +
Sbjct: 911 TDTKVYFEVIVSKQKVNVPKVFKLSSQISTANMVAFNSKGVLQKYTSPSEILKEFYPVRR 970
Query: 809 ------HDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEED-----PDKDY----- 852
D L K LE + R E D ++ D DK+Y
Sbjct: 971 DLYVRRKDFLLKKLNVEMTILENKVRFIKEVVADTLKIVKRKSADIVKELTDKEYTKKDN 1030
Query: 853 --DYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD--------ALR 902
DYLL M+ SLT+ER ++L + K E N LK + D+W DLD +++
Sbjct: 1031 SYDYLLTMSIASLTVERIDKLENESSTKRKEYNTLKNISIEDMWISDLDEFLKHLDLSVK 1090
Query: 903 EKDKIHPCPGGNRTRGLALKRQTRYQP 929
D P G + + + ++ + P
Sbjct: 1091 NDDNPRPKRKGRKIKQPVISKEIKNNP 1117
>gi|302673662|ref|XP_003026517.1| hypothetical protein SCHCODRAFT_17796 [Schizophyllum commune H4-8]
gi|300100200|gb|EFI91614.1| hypothetical protein SCHCODRAFT_17796 [Schizophyllum commune H4-8]
Length = 1494
Score = 608 bits (1569), Expect = e-171, Method: Compositional matrix adjust.
Identities = 324/691 (46%), Positives = 414/691 (59%), Gaps = 127/691 (18%)
Query: 2 SSDESDFD-----PDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSV 56
+ DESD D PD + +G P + NK S + YQK +QLEHIL RPD+YIGSV
Sbjct: 54 AEDESDIDVVMADPDEVNDADGVDPTS-SKKNK-SASETYQKLTQLEHILKRPDSYIGSV 111
Query: 57 EPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQET 116
E I + MW + E M R + YVPG +KI DEILVNA DNK DP M+ IK++ + +
Sbjct: 112 ETIQQPMWTYDAEKKRMVHRTVKYVPGFFKIVDEILVNAADNKINDPSMDTIKVSYDLDE 171
Query: 117 NTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTS 176
NTISV+NNGKGIP+ H EKM++P +IFGHLL+SSNY
Sbjct: 172 NTISVYNNGKGIPIEMHSREKMYIPELIFGHLLSSSNY---------------------- 209
Query: 177 SNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKS 236
+D+E K+TGGRNGYGAKL NI+S +F VET+ K+ +KQ W DNMSK P+I S
Sbjct: 210 ---DDDEKKLTGGRNGYGAKLANIYSHEFTVETADKNTKQKYKQTWTDNMSKCGKPKITS 266
Query: 237 -GSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNF 295
G +++T++TF PDL +F M +D+D L+ RR YD A + KDVKVFLN E+L +KNF
Sbjct: 267 NGKGEEYTRVTFRPDLKRFGMDRIDEDTASLLQRRVYDLAGTVKDVKVFLNDERLKIKNF 326
Query: 296 QDYVKLYTDRQDEDGDPVK---------IIYENVNPRWEVAIAPSDRGFQQVSFVNSIAT 346
+ YV++Y + + V I++E + RWEVA S+ FQQVSF NSIAT
Sbjct: 327 KQYVEMYINSAQAEASEVSGGAAQTKPTIVHEILGKRWEVAFTVSEGTFQQVSFANSIAT 386
Query: 347 TKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGV 406
KGG HV+ + D I K ++ + KKNK
Sbjct: 387 IKGGTHVNLIADQIAKNLLASINKKNK--------------------------------- 413
Query: 407 RLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS-------------- 452
+K Q+KNH+WIF+N LI NPTFDSQTKE +TL FG+
Sbjct: 414 ---AATVKAPQIKNHMWIFVNALIENPTFDSQTKETLTLPASKFGTKPVLSEDFMKKVQK 470
Query: 453 ------------------------------TCVPKLEDANDAGTKNSIDCTLILTEGDSA 482
T +PKL DAN+AGTK + DCTLILTEGDSA
Sbjct: 471 SPLVENILNWAKFKADQQIKKTDGSKRSRLTGLPKLSDANNAGTKYAKDCTLILTEGDSA 530
Query: 483 KSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTV 542
K+LA++GLGVVGRD YGVFPLRGKLLNVREA H QI++N EI N+ KILGLQ++K YT
Sbjct: 531 KALAIAGLGVVGRDNYGVFPLRGKLLNVREARHDQIMKNEEIQNIKKILGLQHNKDYT-- 588
Query: 543 EDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL--PFLEEFITPIIKATKA 600
D+ +LRYG+LMIMTDQD DGSHIKGLI+NF+ H +P+LL+L FL EFITPI++ TK
Sbjct: 589 -DIASLRYGKLMIMTDQDHDGSHIKGLILNFLDHFYPSLLKLDPAFLLEFITPIVRVTKG 647
Query: 601 REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+ F++LPE+E W E T + + KYYK
Sbjct: 648 NQRKDFFTLPEYERWLETTPDARKWSAKYYK 678
Score = 135 bits (340), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 83/108 (76%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPE+Y+PIIPMVLVNGA+GIGTGW T IP++NP +IV NI+R++ GE+ +PM PW++ F
Sbjct: 888 VEPEYYMPIIPMVLVNGADGIGTGWSTSIPSYNPTDIVANIRRLMDGEEQVPMFPWWRGF 947
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
GEI G +++ V G L+D ++EITEL + KWT ++K L+T++
Sbjct: 948 NGEIKSTGKNKYDVTGIARKLNDTQVEITELPIHKWTQNFKAELETMM 995
>gi|46370596|gb|AAS90120.1| DNA topoisomerase type 2 [Tetrahymena thermophila]
Length = 1662
Score = 607 bits (1564), Expect = e-170, Method: Compositional matrix adjust.
Identities = 314/652 (48%), Positives = 408/652 (62%), Gaps = 117/652 (17%)
Query: 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFD 89
MSVE YQKK+QLEHILLRPDTY+GS E E MW++ + + E R+I YVP LYKIFD
Sbjct: 1 MSVETTYQKKTQLEHILLRPDTYVGSNEYQDEQMWVLADDGSSFENRQIKYVPALYKIFD 60
Query: 90 EILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
EILVNA DN QRD +M + + ++Q+ N IS+ N+GKGIPV HK+ ++VP +IFGHLL
Sbjct: 61 EILVNAADNYQRDKRMKRLDVIIDQKNNCISILNDGKGIPVQIHKEYNIYVPELIFGHLL 120
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
TSSNYND EE KV GGRNG+GAKL NIFS+KF+VE+
Sbjct: 121 TSSNYND-------------------------EEKKVVGGRNGFGAKLTNIFSTKFIVES 155
Query: 210 SCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
+ S+ KK F+ W NMS+ + P+I S ++ D+TKITF PDL KF M L+KD+VDL+ +
Sbjct: 156 ADSKNKKKFQMTWTKNMSEQSEPQISSYTESDYTKITFYPDLKKFHMKELEKDIVDLMKK 215
Query: 270 RAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENV---NPRWE 325
R YD A VKV LNGE++ + +F DY Y Q G V + +N N RWE
Sbjct: 216 RVYDMAGVIGGSVKVSLNGERISISSFSDYCDFYLKNQ---GAEVIKVSDNKGTNNQRWE 272
Query: 326 VAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
V + S+ FQQVSFVNSI T+KGG HV+ + D I ++++E +KKK K L
Sbjct: 273 VIASLSEGQFQQVSFVNSICTSKGGTHVNYITDQITEKLMETLKKKEKSLN--------- 323
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTL 445
+K FQVK+H+WIF+NCLI NP+FD+QTKE +TL
Sbjct: 324 ---------------------------IKQFQVKSHLWIFVNCLIENPSFDTQTKETLTL 356
Query: 446 QKGSFGSTC---------------------------------------------VPKLED 460
++ SFGSTC VPKLED
Sbjct: 357 RQQSFGSTCEVSEKFIKELLKSNIINHILLQARAKEQAKMAKTLSAKKQSRLLGVPKLED 416
Query: 461 ANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILE 520
ANDAGT+N+ CTLI+TEGDSAK+LA+SG+ VVGRDK+GVFPL+GK+LNVR++T KQI E
Sbjct: 417 ANDAGTRNAESCTLIITEGDSAKALAMSGIEVVGRDKFGVFPLKGKMLNVRDSTSKQITE 476
Query: 521 NAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPT 580
N EI N++K++G++ + Y V K+LRYG +MIM DQD DGSHIKGL INFI + WP+
Sbjct: 477 NLEIQNIIKVMGMKLNTNYDNV---KSLRYGSIMIMADQDHDGSHIKGLFINFIQNFWPS 533
Query: 581 LLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
L ++ FL+EFITPI+K K + +SF+S+ +F+ WK N H +KIKYYK
Sbjct: 534 LFQMDGFLKEFITPIVKVRKGNQSISFFSIQDFKRWKSTCPNQHLWKIKYYK 585
Score = 115 bits (287), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 75/109 (68%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
++EP +Y+PIIP L+NGA+GIGTGW T IP +NPRE+VD+I++ + G + PWYK
Sbjct: 794 QVEPIYYLPIIPTALLNGADGIGTGWSTSIPCYNPRELVDSIEKRMMGVPFTDLLPWYKG 853
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
F GEI S+ V+G+ ++++ +EITEL + KW DYK+ L+ L
Sbjct: 854 FTGEISNNEKSQITVSGKYHLVNETTIEITELPIKKWIRDYKNFLEEKL 902
Score = 47.4 bits (111), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 815 KPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKK 874
K K QLE+++ Q + +E +T E K+Y+YLL + WSLT E+ E+ ++
Sbjct: 1050 KSSKLTSQLEQEQNQ----DSNEENFETNPNEINAKEYNYLLSLPMWSLTYEKVEEIKQE 1105
Query: 875 RDDKMTELNILKKKAPTDLWSDDL 898
+ +K EL+ L D+W +DL
Sbjct: 1106 QKNKQDELDKLVATEVIDIWKEDL 1129
>gi|47216863|emb|CAG11670.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1568
Score = 606 bits (1563), Expect = e-170, Method: Compositional matrix adjust.
Identities = 326/601 (54%), Positives = 399/601 (66%), Gaps = 90/601 (14%)
Query: 22 KKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITET------------------- 62
+K A+K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+
Sbjct: 4 RKDKAASKLSVERVYQKKTQLEHILLRPDTYIGSVEPVTQVGPGSTAPRPKTTPFLEYSC 63
Query: 63 --------MWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQ 114
MW+ + E M +RE+TYVPGLYKIFDEILVNA DNKQRD M IKIT++
Sbjct: 64 PIWFFFQQMWVFDEEVG-MNQREVTYVPGLYKIFDEILVNAADNKQRDKNMTAIKITIDP 122
Query: 115 ETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLL 174
E+NTIS+WNNGKGIPVVEHKDEKM+VP +IF GHLL
Sbjct: 123 ESNTISIWNNGKGIPVVEHKDEKMYVPALIF-------------------------GHLL 157
Query: 175 TSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI 234
TSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VET+C EY+ SFKQ W++NM+K + P++
Sbjct: 158 TSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYRHSFKQTWQNNMTKTSEPKV 217
Query: 235 KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKN 294
K DDFT +TF PDL+KFKM LDKD + L+TRRAYD A S + VKV LNG+KLPV
Sbjct: 218 KLFDGDDFTCVTFQPDLSKFKMEKLDKDTMALLTRRAYDVAGSCRGVKVTLNGKKLPVNG 277
Query: 295 FQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHV 353
F+ YV LY D+ DE G +K++ E VN RWEV + S++GFQQ+SFVNSIATTKGGRH+
Sbjct: 278 FRSYVDLYVKDKLDETGVALKVVNETVNERWEVCLTLSEKGFQQISFVNSIATTKGGRHI 337
Query: 354 DAVVDAIVKQIIEVVKKKNKDLGCTI--------IMLFGNKF-------NNVKNNKLQMA 398
D VVD IV ++IEVVKKKNK G T+ I +F N + K N
Sbjct: 338 DYVVDQIVAKLIEVVKKKNK-AGVTVKPFQVKNHIWVFVNALIENPSFDSQTKENMTLQT 396
Query: 399 KT------LIDIGVRL-----GGMALKPFQVKNHIWIFI---NCLIVNPT-----FDSQT 439
K+ L D +R G + VK+ + NC IV F +QT
Sbjct: 397 KSFGSKCPLSDKFIRAVRTPPGRPSSCTRAVKSRCLCHLQATNCGIVESILNWVKFKAQT 456
Query: 440 KENMTLQKGSFGST-CVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKY 498
+ N +PKL+DANDAG K+S +CTLILTEGDSAKSLAVSGLGV+GRD+Y
Sbjct: 457 QLNKKCSSVKHSKIKGIPKLDDANDAGGKHSSECTLILTEGDSAKSLAVSGLGVIGRDRY 516
Query: 499 GVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTD 558
GVFPLRGK+LNVREATHKQI+ENAEINN++KI+GLQY K Y E +++LRYG++MIMTD
Sbjct: 517 GVFPLRGKILNVREATHKQIMENAEINNIIKIVGLQYKKSYDDAESLRSLRYGKIMIMTD 576
Query: 559 Q 559
Q
Sbjct: 577 Q 577
Score = 145 bits (366), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/115 (56%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
++EPEWYIPIIPMVLVNGAEGIGTGW KIPN++ REIV+NI RM+ ++PL M P YK
Sbjct: 970 KVEPEWYIPIIPMVLVNGAEGIGTGWACKIPNYDVREIVNNINRMLSRQEPLQMLPSYKG 1029
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
FKG I G ++++V+GE++++D + +EITEL V WT YK++ L+ +L G++K
Sbjct: 1030 FKGVIHELGQNQYLVSGEVSVIDKNTVEITELPVRTWTQAYKESVLEPMLQGSDK 1084
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 822 QLERQERQAAE-GEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMT 880
Q +R+ RQA E E +++ S +++Y+L M W LT E+ ELLK+RD K
Sbjct: 1247 QSKREPRQAQEEDEGNDSDSSLDSGSSSGPNFNYILNMPLWCLTKEKVEELLKQRDLKRG 1306
Query: 881 ELNILKKKAPTDLWSDDLDALREK 904
ELN L++K+P DLW +DL E+
Sbjct: 1307 ELNELQRKSPEDLWKEDLAVFVEE 1330
Score = 55.1 bits (131), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 32/36 (88%)
Query: 596 KATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+ATK ++E++FYS+PEFEEWK++T N+ ++ IKYYK
Sbjct: 666 QATKNKQEVAFYSIPEFEEWKKQTDNYKSWHIKYYK 701
>gi|328862532|gb|EGG11633.1| hypothetical protein MELLADRAFT_46846 [Melampsora larici-populina
98AG31]
Length = 1259
Score = 606 bits (1563), Expect = e-170, Method: Compositional matrix adjust.
Identities = 327/673 (48%), Positives = 414/673 (61%), Gaps = 128/673 (19%)
Query: 17 NGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERR 76
+GP+P KK S + YQK +QLEH+L RPDTYIGSVE I + MW+ ++E M +
Sbjct: 105 SGPAPSKK------SASQTYQKLTQLEHVLKRPDTYIGSVEAIRQYMWVYDKEKKAMANK 158
Query: 77 EITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDE 136
EI++VPGLYKI DEILVNA DNKQRD KM+ +K+T++ E N ISV NNGKGIP+ H+ E
Sbjct: 159 EISFVPGLYKIVDEILVNAADNKQRDDKMDTLKVTIDPEKNLISVMNNGKGIPIEIHETE 218
Query: 137 KMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAK 196
++P +IFGHLL SN+ +D+E K TGGRNGYGAK
Sbjct: 219 GCYIPELIFGHLLAGSNF-------------------------DDDEKKTTGGRNGYGAK 253
Query: 197 LCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFK 255
L NI+S++F+VET+ + K +KQ +++NMS P+I K D +TKI+F PDL KF
Sbjct: 254 LANIYSTEFIVETAEATTCKKYKQTFRNNMSVKEKPKITENKKGDQYTKISFKPDLVKFN 313
Query: 256 M---TSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDE---D 309
+ L DM L+++R YD A + K+VKV+LN E+L V F+ YV++YT+ +E
Sbjct: 314 LPAENGLAGDMEALLSKRVYDMAGTLKNVKVWLNDERLKVTTFKKYVEMYTNGINEVKIP 373
Query: 310 GDP------VKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQ 363
G P I+YE RWEVA PSD FQQ+SF NSIATTKGG HVD VV +V++
Sbjct: 374 GSPGAGPPKATILYEECGKRWEVAFTPSDGQFQQISFCNSIATTKGGTHVDHVVKQLVEK 433
Query: 364 IIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIW 423
I E K + LKPFQV+NH+W
Sbjct: 434 ITEAANKHK------------------------------------AKVKLKPFQVRNHLW 457
Query: 424 IFINCLIVNPTFDSQTKENMTLQKGSFGSTCV---------------------------- 455
+F+NCL+ NP FDSQTKENMTL FGS CV
Sbjct: 458 VFVNCLVENPAFDSQTKENMTLGVSKFGSKCVMSDEFFKKVMKSGVIDSVVDFAKLKEEV 517
Query: 456 ----------------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYG 499
KLEDAN+AGTK + +CTLILTEGDSAKSLAV+GL V+GRD YG
Sbjct: 518 ALKKTDGSKRSRITGIVKLEDANNAGTKKAAECTLILTEGDSAKSLAVAGLTVIGRDNYG 577
Query: 500 VFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQ 559
VFPLRGKLLNVREA+ Q+L NAEI ++ KI+GLQ KKYT+ E +LRYG LMIMTDQ
Sbjct: 578 VFPLRGKLLNVREASGTQLLANAEIQHIKKIMGLQQGKKYTSRE---SLRYGSLMIMTDQ 634
Query: 560 DQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEE 618
D DGSHIKGLIINF+ + +P+LL +P FL EFITPI+K T+ ++ELSF+++PEFE WKEE
Sbjct: 635 DHDGSHIKGLIINFLDYFFPSLLEIPGFLVEFITPIVKVTRKKQELSFFTMPEFERWKEE 694
Query: 619 TTNWHTYKIKYYK 631
+K KYYK
Sbjct: 695 NNGGREWKSKYYK 707
Score = 119 bits (299), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 75/115 (65%)
Query: 658 GRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYK 717
+IEPEWY+P++PMVLVNG+ GIGTGW + IPN+NP +IV+N++R + E P+ PW++
Sbjct: 915 AQIEPEWYVPVLPMVLVNGSSGIGTGWSSDIPNYNPMDIVENLRRKLSDEPLEPIYPWFR 974
Query: 718 NFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F G I +F V GE D+D +EITEL + W YK+ L+ + +K
Sbjct: 975 GFTGHITPEAPGKFKVTGEWNQPDEDTVEITELPIRVWNLTYKELLEAWITSTDK 1029
Score = 50.8 bits (120), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 31/51 (60%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
DYDYLL M LT E+ +LL +RD+K +L IL K DLW DLDA
Sbjct: 1198 DYDYLLSMAISRLTAEQVAKLLAERDEKEKDLQILLGKTAKDLWHVDLDAF 1248
>gi|74188146|dbj|BAE37168.1| unnamed protein product [Mus musculus]
Length = 511
Score = 605 bits (1560), Expect = e-169, Method: Compositional matrix adjust.
Identities = 306/546 (56%), Positives = 367/546 (67%), Gaps = 107/546 (19%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
+ K K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T
Sbjct: 27 TANKNDSTKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVT 85
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
+VPGLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++
Sbjct: 86 FVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVY 145
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCN 199
VP +IF G LLTSSNY+D+E KVTGGRNGYGAKLCN
Sbjct: 146 VPALIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCN 180
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSL 259
IFS+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM L
Sbjct: 181 IFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKL 240
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYE 318
DKD+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E
Sbjct: 241 DKDIVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHE 300
Query: 319 NVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCT 378
N RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 301 LANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVSKLIEVVKKKNK----- 355
Query: 379 IIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQ 438
G+++KPFQVKNHIW+FINCLI NPTFDSQ
Sbjct: 356 ------------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQ 385
Query: 439 TKENMTLQKGSFGSTC-------------------------------------------- 454
TKENMTLQ SFGS C
Sbjct: 386 TKENMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIK 445
Query: 455 -VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREA 513
+PKL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA
Sbjct: 446 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREA 505
Query: 514 THKQIL 519
+HKQI+
Sbjct: 506 SHKQIM 511
>gi|405117738|gb|AFR92513.1| DNA topoisomerase II [Cryptococcus neoformans var. grubii H99]
Length = 1247
Score = 605 bits (1559), Expect = e-169, Method: Compositional matrix adjust.
Identities = 315/647 (48%), Positives = 405/647 (62%), Gaps = 119/647 (18%)
Query: 40 SQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNK 99
SQ EH+L RPDTYIGSVE IT+ MW++N ET M R IT+VPG KIFDEILVNA DNK
Sbjct: 115 SQREHVLKRPDTYIGSVEAITQPMWVLNPETKTMVHRPITFVPGFLKIFDEILVNASDNK 174
Query: 100 QRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEED 159
DP M+ IK+ +++E NTISV+NNG+GIPV H E + +P +IFGHLL SN
Sbjct: 175 INDPTMDSIKVVIDREKNTISVYNNGRGIPVEMHTKEGVMIPELIFGHLLAGSN------ 228
Query: 160 KVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFK 219
++D++ K+TGGRNGYGAKL NI+S +F+VET+ K +K
Sbjct: 229 -------------------FDDDQKKLTGGRNGYGAKLANIYSHEFIVETADKVNSKKYK 269
Query: 220 QVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAST 278
Q++ +NMSK +P+I K +++TKITF PDL +F M +D D L+ +R YD A +
Sbjct: 270 QIFSNNMSKKGTPKILENKKGEEWTKITFKPDLERFGMNGIDDDTNALLMKRVYDMAGTV 329
Query: 279 KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVK---------IIYENVNPRWEVAIA 329
KDVKVFLN E++ VKNF+ YV++Y + IIYE N RWEVA A
Sbjct: 330 KDVKVFLNDERIKVKNFKQYVEMYLNASTTAASEAAGGAAVTKPPIIYEVANKRWEVAFA 389
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD F+QVSF NSIATTKGG HVD + I ++++ +KKKNK
Sbjct: 390 LSDGEFKQVSFTNSIATTKGGTHVDMIATQIANKLMDQIKKKNK---------------- 433
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
+KPFQ+KNH+WIF+N LI NP FDSQTKEN+TL+ +
Sbjct: 434 --------------------AAPVKPFQIKNHMWIFVNALIENPAFDSQTKENLTLKSSA 473
Query: 450 FGSTC--------------------------------------------VPKLEDANDAG 465
FGS C + KLEDAN+AG
Sbjct: 474 FGSKCELSEEFIKKVAKTGIIDNVLNWARFKQDQILKKTDGTKRSRISGIVKLEDANNAG 533
Query: 466 TKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEIN 525
+NS +CTLILTEGDSAK+LAVSGL VVGRD+YGVFPLRGKLLNVREA H QI++N EI
Sbjct: 534 GRNSKNCTLILTEGDSAKALAVSGLAVVGRDEYGVFPLRGKLLNVREAGHDQIIKNVEIQ 593
Query: 526 NLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP 585
++ +ILGL++++ Y TV+ +LRYG LMIMTDQD DGSHIKGLIINF+ H +P+LLR+P
Sbjct: 594 HIKQILGLKHNQDYATVD---SLRYGHLMIMTDQDHDGSHIKGLIINFLDHFYPSLLRIP 650
Query: 586 -FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K ++E+SFY++P++EEWK + N ++ KYYK
Sbjct: 651 NFLVEFITPIVKVWKGKKEISFYTMPQYEEWKSQNNNGRGWESKYYK 697
Score = 58.9 bits (141), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 35/55 (63%)
Query: 845 EEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
+E DYDYLLGM WSLT E+ +LL +RD K EL L K +P D+W DLD
Sbjct: 1127 DEGQASDYDYLLGMAIWSLTSEKVEKLLAERDAKEQELIELLKLSPNDIWDRDLD 1181
Score = 50.8 bits (120), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 14/64 (21%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGT--GWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWY 716
RIEP++++P +PMVL+NGA+GIGT G + KI N EI + LP++ W
Sbjct: 906 RIEPDYFMPTVPMVLINGADGIGTVSGVIEKI-NDTTLEITE-----------LPIRRWT 953
Query: 717 KNFK 720
++FK
Sbjct: 954 QDFK 957
>gi|41052970|dbj|BAD07880.1| putative DNA topoisomerase II [Oryza sativa Japonica Group]
Length = 1525
Score = 604 bits (1557), Expect = e-169, Method: Compositional matrix adjust.
Identities = 322/655 (49%), Positives = 411/655 (62%), Gaps = 120/655 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E++YQKK+QLEHILLRPDTYIGSVE T +W+ E M R +TYVPGLYKIFDE
Sbjct: 27 TIEEMYQKKTQLEHILLRPDTYIGSVEKHTAQLWVY--EDGAMVSRSVTYVPGLYKIFDE 84
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNKQRDP M+ +++ ++ + ISV+NNG GIPV H++E ++VP MIF
Sbjct: 85 ILVNAADNKQRDPSMDSLRVEIDADEGRISVYNNGDGIPVEIHQEEGVYVPEMIF----- 139
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
GHLLTSSNY+D K TGGRNGYGAKL NIFS++FV+ET+
Sbjct: 140 --------------------GHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFVIETA 179
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
+K +KQV+ +NM K + P+I K +++T++TF PDL KF MT L+ D+V L+ +
Sbjct: 180 DGRRQKKYKQVFSENMGKKSEPQITKCKQGENWTRVTFKPDLAKFNMTHLENDVVALMRK 239
Query: 270 RAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVK---IIYENVNPRWE 325
R D A + K VKV L+ +K+PV +F DYVKLY +D D V I + VN RWE
Sbjct: 240 RVVDMAGTLGKTVKVELDHQKVPVHSFSDYVKLYIKSASKDRDDVNELPSISQKVNDRWE 299
Query: 326 VAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
V ++ S+ FQQVSFVN IAT KGG HVD V + I ++ +V K+NK+
Sbjct: 300 VCVSLSEGQFQQVSFVNRIATIKGGTHVDYVTNQIATHVMNIVNKRNKN----------- 348
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTL 445
+K VK+H+W+F+N LI NP FDSQTKE +T
Sbjct: 349 -------------------------AHMKAHNVKSHLWVFVNALIDNPAFDSQTKETLTT 383
Query: 446 QKGSFGSTC--------------------------------------------VPKLEDA 461
++ SFGS C +PKLEDA
Sbjct: 384 RQASFGSKCELSDDFLKKVGSSAIVLNLLSWAEFKLSKELQKTDGSKRSRLTGIPKLEDA 443
Query: 462 NDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILEN 521
N AG K+S +CTLILTEGDSAK+LA++G+ VVGRD YGVFPLRGKLLNVREA+HKQI+EN
Sbjct: 444 NGAGGKDSNNCTLILTEGDSAKALAMAGISVVGRDYYGVFPLRGKLLNVREASHKQIMEN 503
Query: 522 AEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTL 581
AEI N+ +ILGLQ+ K+Y + K LRYG LMIMTDQD DGSHIKGL+INFIH WP+L
Sbjct: 504 AEIQNIKQILGLQHGKQYDST---KGLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSL 560
Query: 582 LRLP-FLEEFITPIIKATKAREE---LSFYSLPEFEEWKEET-TNWHTYKIKYYK 631
+++P FL EFITPIIKAT R++ L FYS+PE+E+WKE N + IKYYK
Sbjct: 561 IKIPSFLVEFITPIIKATNKRDKKIVLPFYSMPEYEQWKESLGGNASGWSIKYYK 615
Score = 132 bits (333), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 75/108 (69%), Gaps = 4/108 (3%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY+PI+PMVLVNG+EGIGTGW T IPN+NPR+IV N++R++ E PM PWY+ F
Sbjct: 825 IEPTWYVPILPMVLVNGSEGIGTGWSTFIPNYNPRDIVANLRRLLNDEPVEPMDPWYRGF 884
Query: 720 KGEID----YCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTL 763
KG I G + V G I ++DD L ITEL + +W+ DYK+ L
Sbjct: 885 KGSIQKTGTKAGGVSYTVTGIIEVVDDTTLRITELPIRRWSQDYKEFL 932
Score = 55.8 bits (133), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 83/196 (42%), Gaps = 37/196 (18%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDD-------LDALRE 903
DY+YLL M +LT+ER +L+ ++ E+ LK+ P LW D LDAL E
Sbjct: 1134 DYEYLLSMAIGTLTLERVQQLIAEKGRMENEVAELKRTRPKSLWMRDLDAFEKELDALDE 1193
Query: 904 KDKIHP--------CPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAPPPTKA 955
KD + GG A KR+ R +N + S G A P
Sbjct: 1194 KDSMDAEERRATRNAGGGAAPNKAAPKRRPRKTATNT------QAAESSDGNAAAPAVPK 1247
Query: 956 SPVKKKKPAAKRPAPKSDSSDLSDSDGDSDFASRKKKTAAAKKAKPAKKES------EYS 1009
+KKPA K + L+DS+ D D+ + K AA KK +PAKK S E
Sbjct: 1248 PAAPRKKPAGK--------ASLADSE-DEDYIAAIPKPAAQKK-QPAKKASTQLSDDEDD 1297
Query: 1010 STVCLFKRFGRRNCND 1025
+ L R N +D
Sbjct: 1298 EVLALKDRLAAYNLDD 1313
>gi|413938393|gb|AFW72944.1| DNA topoisomerase 2 [Zea mays]
Length = 1412
Score = 602 bits (1553), Expect = e-169, Method: Compositional matrix adjust.
Identities = 322/650 (49%), Positives = 415/650 (63%), Gaps = 115/650 (17%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E++YQKK+QLEHILLRPDTYIGSVE T+ +W+ E M R +TYVPGLYKIFDE
Sbjct: 21 TIEEMYQKKTQLEHILLRPDTYIGSVEKHTQALWIY--EDGAMVNRSVTYVPGLYKIFDE 78
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNKQRDPKM+ +++ ++ ++ ISV+NNG GIPV H++E ++VP MI G
Sbjct: 79 ILVNAADNKQRDPKMDALRVEIDVDSCCISVYNNGDGIPVEVHQEEGVYVPEMILG---- 134
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
HLLTSSNYND E K TGGRNGYGAKL NIFS++FV+ET+
Sbjct: 135 ---------------------HLLTSSNYNDNEKKTTGGRNGYGAKLTNIFSTEFVIETA 173
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
+K +KQV+ +NM K + P+I K +++T++TF PDL KF MT L+ D+V L+ +
Sbjct: 174 DGRRQKKYKQVFYENMGKKSEPQITKCKQGENWTRVTFKPDLAKFNMTHLEDDVVALMRK 233
Query: 270 RAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDG-DPVKIIYENVNPRWEVA 327
R D A + K VKV L+G+++P+K+F DYV LY + D D K IYE VN RWEV
Sbjct: 234 RVVDMAGTLGKTVKVELDGQRVPIKSFCDYVDLYMKSANCDRPDNFKRIYEQVNDRWEVC 293
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
++ S+ FQQVSFVN IAT +GG HVD V + I ++ +V KKNK+ +
Sbjct: 294 VSQSEGQFQQVSFVNRIATIRGGSHVDYVTNQIANHVVAIVNKKNKNANMKL-------- 345
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
VK+H+W+F+N LI NP FDSQTKE +T ++
Sbjct: 346 ----------------------------HNVKSHLWVFVNALIDNPAFDSQTKETLTTRQ 377
Query: 448 GSFGSTC--------------------------------------------VPKLEDAND 463
GSFGS C +PKLEDAN+
Sbjct: 378 GSFGSKCELSSDFLKKVEKSGVIENVLSWADFKLSKELKKTDGSKKSRISGIPKLEDANE 437
Query: 464 AGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAE 523
AG K+S CTLILTEGDSAK+LA+SG+ VVGRD YGVFPLRGKLLNVREA HKQI++NAE
Sbjct: 438 AGGKDSDKCTLILTEGDSAKALAMSGIAVVGRDYYGVFPLRGKLLNVREANHKQIMDNAE 497
Query: 524 INNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR 583
I ++ +ILGLQ+ K+Y E K LRYG LMIMTDQD DGSHIKGL+INFIH WP+LL+
Sbjct: 498 IQHIKQILGLQHGKQY---ESTKGLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSLLK 554
Query: 584 LP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEET-TNWHTYKIKYYK 631
+P FL EFITPIIKAT+ + SFY++PE+EEW++ + ++ IKYYK
Sbjct: 555 VPSFLVEFITPIIKATRGQTTKSFYTMPEYEEWRKNLGASASSWTIKYYK 604
Score = 139 bits (349), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 80/112 (71%), Gaps = 5/112 (4%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY+PI+PMVLVNG+EGIGTGW T IPN+NPR+IV N++R++ E +PM PWY+ F
Sbjct: 814 IEPTWYMPILPMVLVNGSEGIGTGWSTYIPNYNPRDIVANVRRLLNEESTVPMHPWYRGF 873
Query: 720 KGEID-----YCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
KG I+ S + V G I ++D+ L ITEL + +WT DYKD L++L
Sbjct: 874 KGSIEKTVNTKVAGSTYTVTGIIEVVDNTTLRITELPIRRWTQDYKDFLESL 925
>gi|302812673|ref|XP_002988023.1| hypothetical protein SELMODRAFT_127267 [Selaginella moellendorffii]
gi|300144129|gb|EFJ10815.1| hypothetical protein SELMODRAFT_127267 [Selaginella moellendorffii]
Length = 1151
Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust.
Identities = 334/654 (51%), Positives = 417/654 (63%), Gaps = 122/654 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E+IYQKK+ LEH+LLRPDTY+GS+E T+T+W+ E + R +TYVPGLYKIFDE
Sbjct: 13 TIEEIYQKKTPLEHVLLRPDTYVGSIEKHTQTLWVY--EGGQLVNRAVTYVPGLYKIFDE 70
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNKQRDP M+ +K+T++ E NTISV+NNG G+PV H ++ ++VP MIFGHLLT
Sbjct: 71 ILVNAADNKQRDPSMDAVKVTISVEQNTISVYNNGDGVPVEVHNEQGVYVPEMIFGHLLT 130
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
SSNY +D E K TGGRNGYGAKL NIFS++FV+ET+
Sbjct: 131 SSNY-------------------------DDNEKKTTGGRNGYGAKLANIFSTEFVIETA 165
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
+ K +KQV+ +NMS + P I S S +++TK+TF PDL KF MT L++D+V L+++
Sbjct: 166 DGKRGKKYKQVFSNNMSAKSEPAISSCKSNENWTKVTFKPDLAKFHMTYLEEDVVALMSK 225
Query: 270 RAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
R D A + VKV LNG+KLPVK F DYV LY Q + + IYE N RWEV
Sbjct: 226 RVLDIAGCLGRTVKVELNGQKLPVKTFSDYVGLYLASAQKGKEETLPRIYERANDRWEVC 285
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
++ SD FQQVSFVNSIAT +GG HV V + IV I E+V KKNK+
Sbjct: 286 VSLSDGQFQQVSFVNSIATIRGGTHVQHVSEQIVSHIQEIVNKKNKN------------- 332
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
+K FQ++NH+W+F+N LI NP FDSQTKE +T ++
Sbjct: 333 -----------------------ANVKGFQIRNHLWVFVNSLIDNPAFDSQTKETLTTRQ 369
Query: 448 GSFGSTC--------------------------------------------VPKLEDAND 463
SFGS C + KL+DAND
Sbjct: 370 TSFGSKCELSPEFLKKVSKCGVVDNVLSWADFKQSKELKKNDGAKRQRLTGIAKLDDAND 429
Query: 464 AGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAE 523
AG KNS CTLILTEGDSAK+LA+SG+ VVGR+ YGVFPLRGKLLNVREATHKQI++NAE
Sbjct: 430 AGGKNSEACTLILTEGDSAKALAMSGISVVGRNHYGVFPLRGKLLNVREATHKQIMDNAE 489
Query: 524 INNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR 583
I ++ +ILGLQ K Y E+ K+LRYG LMIMTDQD DGSHIKGLIINFIH WP+LL+
Sbjct: 490 ITSIKQILGLQQGKGY---ENTKSLRYGHLMIMTDQDHDGSHIKGLIINFIHTFWPSLLK 546
Query: 584 LP-FLEEFITPIIKAT-KAREELSFYSLPEFEEWKE----ETTNWHTYKIKYYK 631
+P FL EFITPI+KAT K + LSFY++PE+E WKE ET W IKYYK
Sbjct: 547 VPGFLVEFITPIVKATHKNGKVLSFYTMPEYESWKESLRGETKGW---SIKYYK 597
Score = 128 bits (321), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 77/117 (65%), Gaps = 4/117 (3%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY PI+PMVLVNG+EGIGTGW T +PN+NPR+IV N+K ++R E PM PWYK F
Sbjct: 807 IEPFWYAPILPMVLVNGSEGIGTGWSTFVPNYNPRDIVTNLKHLLRDEQLEPMDPWYKGF 866
Query: 720 KGEIDYCGDSR----FVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KG I + V G + +++ + + EL + KWT DYK+ L+ LL G EK
Sbjct: 867 KGTIVKSATKESGVSYTVTGIVEQVNETTIRVLELPIRKWTQDYKEFLEALLCGTEK 923
Score = 47.8 bits (112), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 830 AAEGEDDEAGSQTQEEEDPDK-----DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNI 884
+G D EA +EE +K DY+YLL M +LT+E+ +L +RD ++
Sbjct: 1073 GGDGSDVEA----DDEEKLNKGVRAGDYEYLLSMPIGTLTLEKVQQLCNERDKLEGDVEE 1128
Query: 885 LKKKAPTDLWSDDLDALREK 904
LKK P DLW DLD E+
Sbjct: 1129 LKKCTPKDLWEKDLDNFLEQ 1148
>gi|302202600|gb|ADL09409.1| DNA topoisomerase II [Omphalotus nidiformis]
Length = 1557
Score = 601 bits (1550), Expect = e-168, Method: Compositional matrix adjust.
Identities = 318/690 (46%), Positives = 417/690 (60%), Gaps = 124/690 (17%)
Query: 2 SSDESDFDPDVQQNGNGP-----SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSV 56
++DES D D +++ + P + K + ++YQK SQLEHIL RPD+YIGSV
Sbjct: 83 NADESIMDVDAEEDDDLPEMAPAATAPAAAGKKKTASEMYQKLSQLEHILKRPDSYIGSV 142
Query: 57 EPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQET 116
E IT+ MW + +T M RE+ YVPG +KI DEILVNA DNK DP M+ +K+ ++ E
Sbjct: 143 ETITQAMWTYDADTKRMVHREVKYVPGFFKIVDEILVNAADNKINDPSMDTLKVNIDIEE 202
Query: 117 NTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTS 176
NTISV+NNGKGIP+ H EKM++P +IFGHLL+SSNY
Sbjct: 203 NTISVYNNGKGIPIEIHSQEKMYIPELIFGHLLSSSNY---------------------- 240
Query: 177 SNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-K 235
+D+E K+TGGRNGYGAK NI+S +F VET+ ++ +KQ W DNMSK P+I K
Sbjct: 241 ---DDDEKKLTGGRNGYGAKHANIYSHEFTVETADKNTQQKYKQTWTDNMSKCGKPKITK 297
Query: 236 SGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNF 295
+ +++T++TF PDL +F M +D+D L+ +R +D A + KDVKV LN E+L +KNF
Sbjct: 298 NARGEEWTRVTFRPDLKRFGMDRIDEDTAGLLRKRVFDMAGTVKDVKVLLNDERLKIKNF 357
Query: 296 QDYVKLY-----TDRQDEDGDPVK----IIYENVNPRWEVAIAPSDRGFQQVSFVNSIAT 346
+ YV+LY + + G + IIYE VN RWE+A A S+ F VSF NSIAT
Sbjct: 358 RQYVELYLHSASAEAAEHSGGAAQPKPSIIYEQVNARWEIAFAVSEGNFMHVSFANSIAT 417
Query: 347 TKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGV 406
KGG HV+ + D I K +I + KKNK
Sbjct: 418 VKGGTHVNLIADQIAKNLITSIGKKNK--------------------------------- 444
Query: 407 RLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS-------------- 452
G A+K Q++NH+WIFIN LI NPTFDSQTKE +TL FG+
Sbjct: 445 ---GAAVKAGQIRNHMWIFINSLIENPTFDSQTKETLTLPASKFGTKPVVSEDFMKKVQK 501
Query: 453 ------------------------------TCVPKLEDANDAGTKNSIDCTLILTEGDSA 482
T +PKL DAN+AGTK + DCTLILTEGDSA
Sbjct: 502 SPIVENILNWAKFKADQQIKKTDGSKRSRLTGLPKLADANNAGTKTARDCTLILTEGDSA 561
Query: 483 KSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTV 542
KSLAV+GLGVVGR+ +GVFPLRGKLL+VREA H QI++N EI N+ KI+GLQ++K Y V
Sbjct: 562 KSLAVAGLGVVGRNNFGVFPLRGKLLSVREARHDQIMKNEEIQNIKKIMGLQHNKDYNNV 621
Query: 543 EDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAR 601
+LRYGRLMIMTDQD DGSHIKGL+INF+ H +P+LL++P FL EF+TPII+ TK
Sbjct: 622 S---SLRYGRLMIMTDQDHDGSHIKGLLINFLDHFYPSLLKVPDFLVEFVTPIIRVTKGN 678
Query: 602 EELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+ F+++PE+E+W E T + KY+K
Sbjct: 679 QRKDFFTIPEYEQWLETTPGADKWSTKYFK 708
Score = 135 bits (340), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/110 (51%), Positives = 80/110 (72%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE+Y+PI+PMVL+NGAEGIGTGW T +P NP +IV NI+R++ E+ +PM PW++ F
Sbjct: 918 IEPEFYMPIVPMVLINGAEGIGTGWSTNVPGFNPLDIVANIRRLMNNEEQVPMHPWWRGF 977
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHG 769
KGEI +++ V G + +DD +EITEL + KWT +K L+T+L G
Sbjct: 978 KGEIKQTAKNKYDVTGVVTKVDDTTVEITELPIHKWTQTFKTELETMLVG 1027
Score = 58.5 bits (140), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 65/136 (47%), Gaps = 19/136 (13%)
Query: 844 EEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
E E DYDYLL M W+LT E+ +L K+ D+ EL L +K P DLW+ DLD E
Sbjct: 1192 EAEGSASDYDYLLSMPIWNLTKEKFEKLRKQAADQEAELLRLLEKTPKDLWNADLDKFME 1251
Query: 904 ---------KDKIHPCPGGN----RTRGLALKRQTRYQPSNRVLTSRDE--PMVVSSGED 948
++K+ G N R + + L TR NR S D+ P+ + +
Sbjct: 1252 DWSKSEEDFQNKMLASTGANKKGKRKQAVLL---TRKSLGNRGGDSDDDFKPIKAAFKKK 1308
Query: 949 APPPTK-ASPVKKKKP 963
APP +K AS KP
Sbjct: 1309 APPASKGASSTANAKP 1324
>gi|302782265|ref|XP_002972906.1| hypothetical protein SELMODRAFT_98330 [Selaginella moellendorffii]
gi|300159507|gb|EFJ26127.1| hypothetical protein SELMODRAFT_98330 [Selaginella moellendorffii]
Length = 1151
Score = 601 bits (1549), Expect = e-168, Method: Compositional matrix adjust.
Identities = 334/654 (51%), Positives = 417/654 (63%), Gaps = 122/654 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E+IYQKK+ LEH+LLRPDTY+GS+E T+T+W+ E + R +TYVPGLYKIFDE
Sbjct: 13 TIEEIYQKKTPLEHVLLRPDTYVGSIEKHTQTLWVY--EGGQLVNRAVTYVPGLYKIFDE 70
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNKQRDP M+ +K+T++ E NTISV+NNG G+PV H ++ ++VP MIFGHLLT
Sbjct: 71 ILVNAADNKQRDPIMDAVKVTISVEQNTISVYNNGDGVPVEVHNEQGVYVPEMIFGHLLT 130
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
SSNY +D E K TGGRNGYGAKL NIFS++FV+ET+
Sbjct: 131 SSNY-------------------------DDNEKKTTGGRNGYGAKLANIFSTEFVIETA 165
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
+ K +KQV+ +NMS + P I S S +++TK+TF PDL KF MT L++D+V L+++
Sbjct: 166 DGKRGKKYKQVFSNNMSAKSEPAISSCKSNENWTKVTFKPDLAKFHMTYLEEDVVALMSK 225
Query: 270 RAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
R D A + VKV LNG+KLPVK F DYV LY Q + + IYE N RWEV
Sbjct: 226 RVLDIAGCLGRTVKVELNGQKLPVKTFSDYVGLYLASAQKGKEETLPRIYERANDRWEVC 285
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
++ SD FQQVSFVNSIAT +GG HV V + IV I E+V KKNK+
Sbjct: 286 VSLSDGQFQQVSFVNSIATIRGGTHVQHVSEQIVSHIQEIVNKKNKN------------- 332
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
+K FQ++NH+W+F+N LI NP FDSQTKE +T ++
Sbjct: 333 -----------------------ANVKGFQIRNHLWVFVNSLIDNPAFDSQTKETLTTRQ 369
Query: 448 GSFGSTC--------------------------------------------VPKLEDAND 463
SFGS C + KL+DAND
Sbjct: 370 TSFGSKCELSPEFLKKVSKCGVVDNVLSWADFKQSKELKKNDGAKRQRLTGIAKLDDAND 429
Query: 464 AGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAE 523
AG KNS CTLILTEGDSAK+LA+SG+ VVGR+ YGVFPLRGKLLNVREATHKQI++NAE
Sbjct: 430 AGGKNSEACTLILTEGDSAKALAMSGISVVGRNHYGVFPLRGKLLNVREATHKQIMDNAE 489
Query: 524 INNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR 583
I ++ +ILGLQ K Y E+ K+LRYG LMIMTDQD DGSHIKGLIINFIH WP+LL+
Sbjct: 490 ITSIKQILGLQQGKGY---ENTKSLRYGHLMIMTDQDHDGSHIKGLIINFIHTFWPSLLK 546
Query: 584 LP-FLEEFITPIIKAT-KAREELSFYSLPEFEEWKE----ETTNWHTYKIKYYK 631
+P FL EFITPI+KAT K + LSFY++PE+E WKE ET W IKYYK
Sbjct: 547 VPGFLVEFITPIVKATHKNGKVLSFYTMPEYESWKESLRGETKGW---SIKYYK 597
Score = 127 bits (320), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 77/117 (65%), Gaps = 4/117 (3%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY PI+PMVLVNG+EGIGTGW T +PN+NPR+IV N+K ++R E PM PWYK F
Sbjct: 807 IEPFWYAPILPMVLVNGSEGIGTGWSTFVPNYNPRDIVTNLKHLLRDEPLEPMDPWYKGF 866
Query: 720 KGEIDYCGDSR----FVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KG I + V G + +++ + + EL + KWT DYK+ L+ LL G EK
Sbjct: 867 KGTIVKSASKESGVSYTVTGIVEQVNETTIRVLELPIRKWTQDYKEFLEALLCGTEK 923
Score = 47.8 bits (112), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 830 AAEGEDDEAGSQTQEEEDPDK-----DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNI 884
+G D EA +EE +K DY+YLL M +LT+E+ +L +RD ++
Sbjct: 1073 GGDGSDVEA----DDEEKLNKGVRAGDYEYLLSMPIGTLTLEKVQQLCNERDKLEGDVEE 1128
Query: 885 LKKKAPTDLWSDDLDALREK 904
LKK P DLW DLD E+
Sbjct: 1129 LKKCTPKDLWEKDLDNFLEQ 1148
>gi|392577303|gb|EIW70432.1| hypothetical protein TREMEDRAFT_43154 [Tremella mesenterica DSM
1558]
Length = 1344
Score = 601 bits (1549), Expect = e-168, Method: Compositional matrix adjust.
Identities = 313/677 (46%), Positives = 416/677 (61%), Gaps = 126/677 (18%)
Query: 11 DVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRET 70
DV + GP+ K++ ++ +YQK SQLEH+L RPD+YIGSVE IT+ MW++N ET
Sbjct: 2 DVDEIDEGPTGAKRSASD------MYQKLSQLEHVLKRPDSYIGSVEAITQMMWVLNAET 55
Query: 71 NHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPV 130
M R T+VPG +KIFDEILVNA DNK D M+ IKI +++E N ISV NNG+GIP+
Sbjct: 56 KTMVFRNTTFVPGFFKIFDEILVNAADNKINDATMDTIKIHIDREKNQISVHNNGRGIPI 115
Query: 131 VEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGR 190
HK E + +P +IFGHLLTSSNY +D++ K+TGGR
Sbjct: 116 EMHKKEGIMIPELIFGHLLTSSNY-------------------------DDDQKKLTGGR 150
Query: 191 NGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTP 249
NGYGAKL NI+S +F+VET+ K +KQV+ NM K + P+I K +++T+ITFTP
Sbjct: 151 NGYGAKLANIYSLEFIVETADKTNGKKYKQVFSHNMGKKSPPKITDNKKGEEYTRITFTP 210
Query: 250 DLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR---- 305
DL +F M +D D L+T+R YD A + KD+KV+LN E+L +K F+ YV++Y +
Sbjct: 211 DLKRFGMNGIDDDTYALLTKRVYDVAGTVKDIKVYLNDERLKIKGFKQYVEMYLNASTQA 270
Query: 306 -QDEDGDPV----KIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAI 360
D G IIYE+ N RWEVA A SD ++ VSF NSI+T KGG HVD + +
Sbjct: 271 ISDAAGGAAVPKPTIIYESPNKRWEVAFALSDGEYRHVSFANSISTIKGGTHVDMISTQL 330
Query: 361 VKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKN 420
++++ +KKKNK +K FQ+KN
Sbjct: 331 ANKLMDQIKKKNK------------------------------------AAPVKAFQIKN 354
Query: 421 HIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC-------------------------- 454
H+WIF+N L+ NP FDSQTKE +TL+ +FGS C
Sbjct: 355 HMWIFVNALVENPAFDSQTKETLTLKSSAFGSRCELSEDFVKKAVSKSGIIDNVLNWAKF 414
Query: 455 -------------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGR 495
+ KLEDAN+AG +N+ CTLILTEGDSAK+LAVSGLGVVGR
Sbjct: 415 KQDQILKKSDGAKRSRISGIVKLEDANNAGGRNASRCTLILTEGDSAKALAVSGLGVVGR 474
Query: 496 DKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMI 555
D YGVFPLRGKLLNVREA H QI++N EI ++ +ILGL++++ Y + + +LRYG +MI
Sbjct: 475 DDYGVFPLRGKLLNVREAGHDQIVKNVEIQHIKQILGLKHNQDYLSTD---SLRYGHVMI 531
Query: 556 MTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEE 614
MTDQD DGSHIKGLIINF+ H +P+LLR+P FL EFITPI+K TK ++E+SFY++P++EE
Sbjct: 532 MTDQDHDGSHIKGLIINFLDHFYPSLLRIPDFLVEFITPIVKVTKGKQEMSFYTMPQYEE 591
Query: 615 WKEETTNWHTYKIKYYK 631
WK + + KYYK
Sbjct: 592 WKAAHNDGRGWDAKYYK 608
Score = 136 bits (343), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 87/113 (76%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP++Y+P++P+VL+NGA+GIGTGW T IPN+NP +IV+N+++M+RGE+P M PW++ F
Sbjct: 818 IEPDYYLPVVPLVLINGADGIGTGWSTSIPNYNPVDIVNNLRKMMRGEEPERMNPWFRGF 877
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
+G I+ ++ V+G I ++++ LEITEL + KWT D+K+ L+ + G +K
Sbjct: 878 RGSIERVEQDKYKVSGIIEKVNNNTLEITELPIRKWTQDFKEMLEEMTTGTDK 930
Score = 57.4 bits (137), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 36/57 (63%)
Query: 843 QEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
+E+E DYDYLLGM WSLT E+ +LL +RD K EL L K + +LW DLD
Sbjct: 1083 EEDEGQASDYDYLLGMAIWSLTAEKVEKLLAERDGKEQELIELLKLSAQNLWDRDLD 1139
>gi|301170788|dbj|BAJ12008.1| topoisomerase II [Samia cynthia walkeri]
Length = 463
Score = 601 bits (1549), Expect = e-168, Method: Compositional matrix adjust.
Identities = 294/484 (60%), Positives = 349/484 (72%), Gaps = 81/484 (16%)
Query: 194 GAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIK-SGSKDDFTKITFTPDLT 252
GAKLCNIFS+KF +ET+ +YKK FKQ W NM K + P+IK SG DDFTK+TF+PDL
Sbjct: 1 GAKLCNIFSTKFTIETASKQYKKHFKQTWGSNMGKASEPKIKDSGKDDDFTKVTFSPDLA 60
Query: 253 KFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD-RQDEDGD 311
KFKM +L+ D+V L++RRAYD AAS+ VKV+LNGE+L + F+DYV LY ++DE+G
Sbjct: 61 KFKMDNLEDDIVALMSRRAYDVAASSPGVKVYLNGERLKINKFKDYVDLYIKGKEDENGQ 120
Query: 312 PVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK 371
P+K++YE VN RWEVA+ S+ GFQQVSFVNSIATTKGG+HVD V D+IVK ++EV+KKK
Sbjct: 121 PLKVVYEKVNERWEVALTLSNSGFQQVSFVNSIATTKGGKHVDTVADSIVKNVLEVLKKK 180
Query: 372 NKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIV 431
NK GG+ +KPFQVKNH+W+FINCLIV
Sbjct: 181 NK-----------------------------------GGVIIKPFQVKNHMWVFINCLIV 205
Query: 432 NPTFDSQTKENMTLQKGSFGSTC------------------------------------- 454
NPTFDSQTKENMTLQ SFGS C
Sbjct: 206 NPTFDSQTKENMTLQAKSFGSKCTLSEKFITAVTKSGLVESVWTWAKFKAQTELVKASGK 265
Query: 455 -------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKL 507
+PKLEDANDAGTKN+ CTLILTEGDSAK+LAVSGL VVGRD YGVFPL+GK
Sbjct: 266 KQSKLKGIPKLEDANDAGTKNAHLCTLILTEGDSAKTLAVSGLSVVGRDHYGVFPLKGKP 325
Query: 508 LNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIK 567
LNVR+A+HKQ+LEN EINNL+KI+GLQY KKY +V+D+K+LRYG++MIM DQDQDGSHIK
Sbjct: 326 LNVRDASHKQVLENVEINNLIKIVGLQYKKKYNSVDDLKSLRYGKVMIMADQDQDGSHIK 385
Query: 568 GLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKI 627
GLIINFIHHNWP LL+LPFLEEFITPI+KATK +E+SFYSLPEFEEWK ET N HT+ I
Sbjct: 386 GLIINFIHHNWPELLKLPFLEEFITPIVKATKKDKEISFYSLPEFEEWKNETENHHTFNI 445
Query: 628 KYYK 631
KYYK
Sbjct: 446 KYYK 449
>gi|388854922|emb|CCF51425.1| probable DNA topoisomerase II [Ustilago hordei]
Length = 1503
Score = 600 bits (1547), Expect = e-168, Method: Compositional matrix adjust.
Identities = 328/701 (46%), Positives = 425/701 (60%), Gaps = 137/701 (19%)
Query: 2 SSDESDFDPDVQQ-------NGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIG 54
+S+ +D DPDV + P+P K + N S + YQK SQLEHIL RPDTYIG
Sbjct: 61 NSNGADSDPDVSMMDSEADVSFQPPAPSKSS--NGKSASETYQKLSQLEHILKRPDTYIG 118
Query: 55 SVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQ 114
SVE TE +W+ ++ M RE TYVPG YKIFDEILVNA DNK RDP M +K+ V +
Sbjct: 119 SVEKHTEKLWVYDKTKQQMAYRETTYVPGFYKIFDEILVNAADNKARDPNMTHLKVEVKR 178
Query: 115 ETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLL 174
+ TISVWNNG GIPV H+ E +++P +IFGHLLTSSNYND
Sbjct: 179 DEGTISVWNNGHGIPVEMHEKEGVYIPELIFGHLLTSSNYND------------------ 220
Query: 175 TSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI 234
+E KVTGGRNGYGAKL NI+S++F VET+ ++ + +KQ + NM + P+I
Sbjct: 221 -------DEAKVTGGRNGYGAKLANIYSTEFTVETADAKNQCKYKQTFTSNMHEKGKPKI 273
Query: 235 KSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVK 293
S K D++T ITF PD F M S+D + L+ +R YD A + K +KV LNGE L +K
Sbjct: 274 TSHKKNDEYTCITFKPDFALFGMESIDDHIEALMLKRVYDMAGTVKGIKVTLNGEVLKIK 333
Query: 294 NFQDYVKLYT-------DRQDEDGDPV--------KIIYENVNPR---WEVAIAPSDRGF 335
NF+ YV++Y + +EDG+ + IIYE+ + WEVA A SD F
Sbjct: 334 NFKQYVEMYVTAINELGGKANEDGEDLPAGAAPKPAIIYESTVDKGRNWEVAFAVSDGEF 393
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
+QVSFVN+IAT KGG+HVD V D ++ ++IE VKK K
Sbjct: 394 RQVSFVNNIATIKGGKHVDHVADQVISRLIEQVKKDKK---------------------- 431
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--- 452
K + P QV+ +W+F+NC IVNPTFD QTKE +TL++ +FGS
Sbjct: 432 -TGKVM-------------PNQVRQQLWVFVNCQIVNPTFDGQTKETLTLKQSAFGSKWT 477
Query: 453 -----------------------------------------TCVPKLEDANDAGTKNSID 471
T +PKLEDAN+AG + + D
Sbjct: 478 LTDDFARKIIKSGVVDNIVSFARYKQDQALKKTDGHKRTRITNIPKLEDANNAGGRKAKD 537
Query: 472 CTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKIL 531
CTLILTEGDSAK+LAV+GL VGRD YGVFPLRGKLLNVREATH QI++NAEI + +I+
Sbjct: 538 CTLILTEGDSAKALAVAGLVEVGRDNYGVFPLRGKLLNVREATHDQIMKNAEIKAIKEII 597
Query: 532 GLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEF 590
GLQ+ K+Y D+ +LRYG +MIMTDQD DGSHIKGLIINF+ H +P+LL+LP FL EF
Sbjct: 598 GLQHGKQYL---DVSSLRYGSIMIMTDQDHDGSHIKGLIINFLDHFYPSLLKLPNFLVEF 654
Query: 591 ITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
ITPI+K +K ++ELSF+++PE+ WKE +N ++IKYYK
Sbjct: 655 ITPIVKCSKGKKELSFFTIPEYMTWKEANSNGKGWRIKYYK 695
Score = 136 bits (342), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 82/113 (72%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP+WY+P++P VL+NGAEGIGTGW T +PN+NP +IV N++R + GED +PMKPWY+ F
Sbjct: 905 IEPQWYMPVVPQVLLNGAEGIGTGWSTFVPNYNPHDIVANLRRRMAGEDVVPMKPWYRGF 964
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G+I+ R+ ++G + +D+ EITEL + WT+ YK++L+ + EK
Sbjct: 965 TGDIEEFAPGRYKLSGRVTQIDEKTYEITELPIRTWTSTYKESLEERILSTEK 1017
Score = 58.9 bits (141), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 830 AAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKA 889
AAE ED + EE D DYDYLL M ++LT E+ ++LLK+RD K EL IL ++
Sbjct: 1162 AAEIEDTDP--IDDEEISSDSDYDYLLNMAIYNLTKEKVDKLLKERDAKEEELKILIGRS 1219
Query: 890 PTDLWSDDLDALRE 903
P +LW +DL E
Sbjct: 1220 PQNLWDEDLAKFLE 1233
>gi|378755091|gb|EHY65118.1| DNA topoisomerase 2 [Nematocida sp. 1 ERTm2]
Length = 1186
Score = 600 bits (1547), Expect = e-168, Method: Compositional matrix adjust.
Identities = 314/647 (48%), Positives = 406/647 (62%), Gaps = 117/647 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+VE+IYQKK+ +EH+LLRPDTYIGSV+P T M++ ET M R+E+TY PGLYKIFDE
Sbjct: 7 TVEEIYQKKTPIEHVLLRPDTYIGSVQPETRNMYVWCSETMKMVRKEVTYTPGLYKIFDE 66
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNK RD +M+ I+I V+++T+TISV N+G+GIPVV H E ++VP +IFGHLLT
Sbjct: 67 ILVNAADNKTRDKRMSEIRIEVDRKTSTISVCNDGQGIPVVIHAKENVYVPELIFGHLLT 126
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
SSNY +D E K+TGGRNGYGAKLCNIFS++F++ET+
Sbjct: 127 SSNY-------------------------DDAEKKMTGGRNGYGAKLCNIFSTRFIIETA 161
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
+ K+ F+QV+ +NM PEI S ++TK+TF PDL KF M +D D + +I +R
Sbjct: 162 DKKNKRMFRQVYTNNMLSKEEPEITPFSGAEYTKVTFQPDLAKFGMKRIDDDFMSMIMKR 221
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAP 330
YD A + + V+ NGEK+ V NF++Y++L+ D V+I YE RWEVA
Sbjct: 222 VYDLAGTVAGITVYYNGEKIGVSNFKEYIRLFFDSD------VEIAYE-AKDRWEVAYVL 274
Query: 331 SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNV 390
D FQ VSFVN I+T +GG HV+ + D IV ++E KK K
Sbjct: 275 GDEQFQHVSFVNRISTPRGGTHVNYIADQIVAAVVEQTKKVEK----------------- 317
Query: 391 KNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSF 450
G+ ++P QVK +I++F+NCLI NP FDSQTKE +TL++ SF
Sbjct: 318 -------------------GLVVRPVQVKANIFLFLNCLIENPAFDSQTKETLTLKQSSF 358
Query: 451 GSTCV--------------------------------------------PKLEDANDAGT 466
GS V PKL+DAN+AGT
Sbjct: 359 GSKHVLGSRFIADIMRSGIVEKSAYAARAKQTQQLKKTDGHKTSKLRGIPKLDDANNAGT 418
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
+ + CTLILTEGDSAKSLAVSGL V+GRD YGVFPLRGKLLNVREATHKQ++EN EINN
Sbjct: 419 RFASQCTLILTEGDSAKSLAVSGLSVIGRDNYGVFPLRGKLLNVREATHKQLMENIEINN 478
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ KI+GLQ+ K+Y T E +LRYG +MIMTDQD DGSHIKGLIIN I H +P+LLR+
Sbjct: 479 IKKIMGLQHGKEYATTE---SLRYGHIMIMTDQDHDGSHIKGLIINMIDHFFPSLLRIKG 535
Query: 586 FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHT-YKIKYYK 631
FL+EFITPI++ATK F+++PEFE W E +++KYYK
Sbjct: 536 FLQEFITPIVRATKGSMSRDFFTIPEFESWTETAEGRENGWRVKYYK 582
Score = 132 bits (332), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 78/112 (69%), Gaps = 1/112 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP+ Y+PIIPMVLVNG++GIGTGW T IP +NP EIVDN+KRMI G++P M PWYK F
Sbjct: 792 VEPDMYVPIIPMVLVNGSDGIGTGWSTCIPPYNPIEIVDNVKRMIMGKEPKEMIPWYKGF 851
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAE 771
GE D G ++ G + DK+ I EL VG WT +YKD L+TL+ +
Sbjct: 852 VGECDDLGSGKYRTIGAFE-QEKDKISILELPVGVWTQNYKDFLETLIESGD 902
>gi|440492872|gb|ELQ75404.1| DNA topoisomerase type II, partial [Trachipleistophora hominis]
Length = 1474
Score = 600 bits (1546), Expect = e-168, Method: Compositional matrix adjust.
Identities = 329/685 (48%), Positives = 422/685 (61%), Gaps = 152/685 (22%)
Query: 19 PSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREI 78
PS +KKT +E++YQKK+ +EHILLRP+TYIGSV+ T+ M+++ E + + I
Sbjct: 32 PSMEKKT------IEQLYQKKTPIEHILLRPETYIGSVDHHTQPMYVL--ENGKIVSKSI 83
Query: 79 TYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKM 138
TYVPGLYKIFDEILVNA DNK RDP M+ K+ V+ + ISVWNNGKG+P+ HK E +
Sbjct: 84 TYVPGLYKIFDEILVNAADNKIRDPSMS--KLCVDIAGDKISVWNNGKGVPIKMHKKENV 141
Query: 139 FVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLC 198
+VP +IF G LLTSSNY+D+E KVTGGRNGYGAKLC
Sbjct: 142 YVPELIF-------------------------GQLLTSSNYDDKEKKVTGGRNGYGAKLC 176
Query: 199 NIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMT 257
NIFSS+F++ET+ S+ ++ Q + DNMSK P I K ++ FTKITFTPDL +FKM
Sbjct: 177 NIFSSEFIIETADSKENITYYQRYSDNMSKREEPVITKQRVRESFTKITFTPDLKRFKME 236
Query: 258 SLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIY 317
+LD+D++ L+ +R YD A+ K VKVFLNGE++P+ +F+ YV LY GD VK+++
Sbjct: 237 NLDEDVISLLKKRVYDMCATIKRVKVFLNGEQIPISSFKQYVSLYL------GDDVKVVH 290
Query: 318 ENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGC 377
E VN RWEVA+ SD FQQVSFVNSI T KGG HV+ V+D +V+ +IE V+KK+K+L
Sbjct: 291 EVVNERWEVAVVLSDEQFQQVSFVNSICTIKGGTHVNHVLDQLVEPVIERVQKKDKNL-- 348
Query: 378 TIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDS 437
+KPF V+N I+IF+N LI N FDS
Sbjct: 349 ----------------------------------VIKPFFVRNSIFIFVNALIENAAFDS 374
Query: 438 QTKENMTLQKGSFGSTC------------------------------------------- 454
QTKE +TL+ SFGS C
Sbjct: 375 QTKETLTLRVSSFGSRCTLSDDFVKHTVALLSDRVLSQALAKMSKQLKKTDGSKSSKITG 434
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+ KL DAN AGTKNS C+LILTEGDSAK+LA+SGL VVGRD YGVFPLRGKLLNVREA
Sbjct: 435 IEKLSDANLAGTKNSQKCSLILTEGDSAKTLAISGLSVVGRDYYGVFPLRGKLLNVREAN 494
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
HKQI+EN E+NNL KIL LQ+ K YT+ E +LRYG ++IMTDQD DGSHIKGLIINF
Sbjct: 495 HKQIMENEELNNLKKILALQHHKDYTSTE---SLRYGHVIIMTDQDHDGSHIKGLIINFF 551
Query: 575 HHNWPTLLRLP-FLEEFITPIIKATKAREE---------------------------LSF 606
H +P+LLR+ FL+EFITPI++ TK + + F
Sbjct: 552 DHFFPSLLRIEGFLKEFITPIVRVTKTKGSRTSRSNSEDDSDEHTNTPASSDPVGTVIDF 611
Query: 607 YSLPEFEEWKEETTNWHTYKIKYYK 631
+++PE+E+WK T + + +KYYK
Sbjct: 612 FTIPEYEDWKNSTPDIKNWTVKYYK 636
Score = 120 bits (302), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 85/120 (70%), Gaps = 6/120 (5%)
Query: 645 LHKVTSDSISMFIGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMI 704
L+ +T D++ +IEP +Y+PI+PMVLVNGA+GIGTGW+TKIPN++ EI+DNIK ++
Sbjct: 836 LNYITEDNM-----KIEPSFYVPIVPMVLVNGADGIGTGWLTKIPNYDLLEIIDNIKLLL 890
Query: 705 RGEDPLPMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLD 764
++ M P+Y+ FKGEI+ G ++ ++G I +D D L ITEL V WT YK+ L+
Sbjct: 891 DDQEMNTMVPFYRGFKGEIEDLGGKKYRISG-IYDVDGDNLTITELPVKIWTQTYKEFLE 949
>gi|224106109|ref|XP_002314046.1| predicted protein [Populus trichocarpa]
gi|222850454|gb|EEE88001.1| predicted protein [Populus trichocarpa]
Length = 1482
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 336/681 (49%), Positives = 425/681 (62%), Gaps = 123/681 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E+ YQKKSQLEHILLRPDTYIGS+E + +W+ E + M R +TYVPGLYKIFDE
Sbjct: 23 TIEETYQKKSQLEHILLRPDTYIGSIEKHAQILWVF--ENDKMVHRSVTYVPGLYKIFDE 80
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNKQRDPKM+ +K+ ++ E N +SV+NNG G+PV HK+E ++VP +IFGHLLT
Sbjct: 81 ILVNAADNKQRDPKMDSLKVVIDVENNLVSVYNNGDGVPVDIHKEEGVYVPELIFGHLLT 140
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
SSNY+D TM K TGGRNGYGAKL NIFS++FV+ET+
Sbjct: 141 SSNYDD----------TM---------------KKTTGGRNGYGAKLTNIFSTEFVIETA 175
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
+ KK +KQV+ +NM K + P I K +++TK+TF PDL KF MT L++D+V L+ +
Sbjct: 176 DGKRKKKYKQVFSNNMGKRSEPIITKCKESENWTKVTFKPDLAKFSMTHLEEDVVALMKK 235
Query: 270 RAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDG-DPVKIIYENVNPRWEVA 327
R D A K VKV LNG ++PVK+FQDYV +Y + E G + K Y+ V RWEV
Sbjct: 236 RVVDMAGCLGKTVKVELNGSRVPVKSFQDYVNMYLNSAAESGSERPKCFYDKVGERWEVC 295
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
++ ++ FQQ SFVNSIAT KGG HVD V + I ++ V KK+K+ GN
Sbjct: 296 VSLTEGQFQQASFVNSIATIKGGTHVDYVTNQITNYVMNAVNKKHKN---------GN-- 344
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
+K VKN++W+F+NCLI NP FDSQTKE +TL++
Sbjct: 345 -------------------------IKAHNVKNYLWVFVNCLIDNPAFDSQTKETLTLRQ 379
Query: 448 GSFGSTC-------------------------------------------VPKLEDANDA 464
SFGS C VPKLEDAN+A
Sbjct: 380 SSFGSKCELSEDFLKKVAKSDIVDNLLSWAKFKENKELKKTDGTKTAKVNVPKLEDANEA 439
Query: 465 GTKNSIDCTLILTEGDSAKSLA---VSGLGVVGRDKYGVFPLRGKLLNVREATHKQILEN 521
G + S CTLILTEGDSAK+LA V+GL + R+ YGVFPLRGKLLNVREAT KQ+ EN
Sbjct: 440 GGRYSEKCTLILTEGDSAKALAIAGVAGLSQMERNFYGVFPLRGKLLNVREATSKQLKEN 499
Query: 522 AEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTL 581
EI ++ KILGLQ+ K+Y V K+LRYG LMIMTDQD DGSHIKGL+INFIH WP+L
Sbjct: 500 KEIESIKKILGLQHDKQYINV---KSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSL 556
Query: 582 LRLP-FLEEFITPIIKAT-KAREELSFYSLPEFEEWKEETT-NWHTYKIKYYKVVYVT-- 636
L++P FL EFITPI+KAT + LSFYS+PE+E WKE + N + IKYYK + +
Sbjct: 557 LKVPSFLVEFITPIVKATHRNGTVLSFYSMPEYESWKESLSGNASGWSIKYYKGLGTSTS 616
Query: 637 --GVLLFKMNLHKVTSDSISM 655
G FK NLHK D + M
Sbjct: 617 KEGKDYFK-NLHKHKKDFLWM 636
Score = 133 bits (335), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 82/120 (68%), Gaps = 6/120 (5%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY+PIIP VLVNG EGIGTGW T IPN+NPR++V NI+R++ GE PM PWY+ F
Sbjct: 819 IEPTWYMPIIPTVLVNGCEGIGTGWSTFIPNYNPRDVVANIRRLLNGEMMEPMNPWYRGF 878
Query: 720 KGEIDY-----CGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
KG I+ G S + VNG I +++ L ITEL + +WT DYK L+++ G +DE
Sbjct: 879 KGTIEKGASKEGGCSSYTVNGVINEVNETTLRITELPIRRWTDDYKAFLNSVTEGT-RDE 937
Score = 52.0 bits (123), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 838 AGSQTQEEED-PD------KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAP 890
A T+E ED PD DYDYLL M +LT+ER +L RD E++ L+K P
Sbjct: 1089 ATDDTEEAEDSPDVSGVRASDYDYLLSMAIGTLTLERVQQLCADRDKLNGEVDSLRKTTP 1148
Query: 891 TDLWSDDLDAL 901
LW DL+AL
Sbjct: 1149 KVLWVKDLEAL 1159
>gi|429962921|gb|ELA42465.1| hypothetical protein VICG_00564 [Vittaforma corneae ATCC 50505]
Length = 601
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 313/647 (48%), Positives = 408/647 (63%), Gaps = 119/647 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E+ YQKK+ EHILLRPDTYIG+++ + M++ + E + + ++YVPGLYKIFDE
Sbjct: 7 TIEETYQKKTPKEHILLRPDTYIGAIDKDVQQMYVWDDEKKKVVCKSVSYVPGLYKIFDE 66
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNK RDPKMN +++ +++E N IS++NNG GIPV H E ++VP +IF
Sbjct: 67 ILVNAADNKMRDPKMNILRVDISKEQNQISIFNNGSGIPVKIHAKENVYVPELIF----- 121
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
GHLLT SNY+D E K+TGGRNGYGAKLCNIFS++F+VET+
Sbjct: 122 --------------------GHLLTGSNYDDNEKKITGGRNGYGAKLCNIFSTEFIVETA 161
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
KK + Q + NM P I+ + ++FTKITF PDL +FKM L+ D++ L+ +R
Sbjct: 162 DKSVKKKYYQRFTKNMDNTEEPIIERYTGEEFTKITFKPDLKRFKMAELEDDIISLLKKR 221
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAP 330
YD + K V V+LNGE LPVKNF++Y+KLY +++ +++ VN RWEV A
Sbjct: 222 VYDMCGTLKSVNVYLNGELLPVKNFKEYIKLYLHNEEQ------VVHSIVNGRWEVGFAV 275
Query: 331 SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNV 390
S+ F QVSFVNSI+T+KGG HV+ V+D ++ I E +KKK+K L
Sbjct: 276 SEDQFNQVSFVNSISTSKGGTHVNHVMDQLIDPITEAIKKKDKSLD-------------- 321
Query: 391 KNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSF 450
+KP +KN+I+IFINCLI NP FDSQTKEN+TL+ SF
Sbjct: 322 ----------------------VKPIHIKNNIFIFINCLIENPAFDSQTKENLTLKVSSF 359
Query: 451 GSTC---------------------------------------------VPKLEDANDAG 465
GS C +PKLEDAN AG
Sbjct: 360 GSKCLPIESFVKDIIKNTPLVEKIVSFSRAKQSAQLKKTDGTKTSRLSGIPKLEDANLAG 419
Query: 466 TKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEIN 525
TK S +CTLILTEGDSAK+LAV+GL VVGRD YGVFPLRGKLLNVREA HKQI++N+EI+
Sbjct: 420 TKRSQECTLILTEGDSAKTLAVAGLSVVGRDLYGVFPLRGKLLNVREANHKQIMDNSEIS 479
Query: 526 NLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP 585
++ KILGLQ+ + Y ED TLRYG +MIMTDQD DGSHIKGLIINF+ H +P+LL++
Sbjct: 480 SIKKILGLQHGRIY---EDTSTLRYGHIMIMTDQDHDGSHIKGLIINFLDHFFPSLLKIK 536
Query: 586 -FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPII+ATK F+++PE+E++K E W IKYYK
Sbjct: 537 NFLLEFITPIIRATKKGVTQDFFTIPEYEKFKAENEGW---AIKYYK 580
>gi|115448107|ref|NP_001047833.1| Os02g0699700 [Oryza sativa Japonica Group]
gi|113537364|dbj|BAF09747.1| Os02g0699700, partial [Oryza sativa Japonica Group]
Length = 956
Score = 598 bits (1542), Expect = e-167, Method: Compositional matrix adjust.
Identities = 322/655 (49%), Positives = 411/655 (62%), Gaps = 120/655 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E++YQKK+QLEHILLRPDTYIGSVE T +W+ E M R +TYVPGLYKIFDE
Sbjct: 27 TIEEMYQKKTQLEHILLRPDTYIGSVEKHTAQLWVY--EDGAMVSRSVTYVPGLYKIFDE 84
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNKQRDP M+ +++ ++ + ISV+NNG GIPV H++E ++VP MIF
Sbjct: 85 ILVNAADNKQRDPSMDSLRVEIDADEGRISVYNNGDGIPVEIHQEEGVYVPEMIF----- 139
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
GHLLTSSNY+D K TGGRNGYGAKL NIFS++FV+ET+
Sbjct: 140 --------------------GHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFVIETA 179
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
+K +KQV+ +NM K + P+I K +++T++TF PDL KF MT L+ D+V L+ +
Sbjct: 180 DGRRQKKYKQVFSENMGKKSEPQITKCKQGENWTRVTFKPDLAKFNMTHLENDVVALMRK 239
Query: 270 RAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVK---IIYENVNPRWE 325
R D A + K VKV L+ +K+PV +F DYVKLY +D D V I + VN RWE
Sbjct: 240 RVVDMAGTLGKTVKVELDHQKVPVHSFSDYVKLYIKSASKDRDDVNELPSISQKVNDRWE 299
Query: 326 VAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
V ++ S+ FQQVSFVN IAT KGG HVD V + I ++ +V K+NK+
Sbjct: 300 VCVSLSEGQFQQVSFVNRIATIKGGTHVDYVTNQIATHVMNIVNKRNKN----------- 348
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTL 445
+K VK+H+W+F+N LI NP FDSQTKE +T
Sbjct: 349 -------------------------AHMKAHNVKSHLWVFVNALIDNPAFDSQTKETLTT 383
Query: 446 QKGSFGSTC--------------------------------------------VPKLEDA 461
++ SFGS C +PKLEDA
Sbjct: 384 RQASFGSKCELSDDFLKKVGSSAIVLNLLSWAEFKLSKELQKTDGSKRSRLTGIPKLEDA 443
Query: 462 NDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILEN 521
N AG K+S +CTLILTEGDSAK+LA++G+ VVGRD YGVFPLRGKLLNVREA+HKQI+EN
Sbjct: 444 NGAGGKDSNNCTLILTEGDSAKALAMAGISVVGRDYYGVFPLRGKLLNVREASHKQIMEN 503
Query: 522 AEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTL 581
AEI N+ +ILGLQ+ K+Y + K LRYG LMIMTDQD DGSHIKGL+INFIH WP+L
Sbjct: 504 AEIQNIKQILGLQHGKQY---DSTKGLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSL 560
Query: 582 LRLP-FLEEFITPIIKATKAREE---LSFYSLPEFEEWKEET-TNWHTYKIKYYK 631
+++P FL EFITPIIKAT R++ L FYS+PE+E+WKE N + IKYYK
Sbjct: 561 IKIPSFLVEFITPIIKATNKRDKKIVLPFYSMPEYEQWKESLGGNASGWSIKYYK 615
Score = 131 bits (329), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 75/108 (69%), Gaps = 4/108 (3%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY+PI+PMVLVNG+EGIGTGW T IPN+NPR+IV N++R++ E PM PWY+ F
Sbjct: 825 IEPTWYVPILPMVLVNGSEGIGTGWSTFIPNYNPRDIVANLRRLLNDEPVEPMDPWYRGF 884
Query: 720 KGEID----YCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTL 763
KG I G + V G I ++DD L ITEL + +W+ DYK+ L
Sbjct: 885 KGSIQKTGTKAGGVSYTVTGIIEVVDDTTLRITELPIRRWSQDYKEFL 932
>gi|146182234|ref|XP_001024182.2| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
thermophila]
gi|146143912|gb|EAS03937.2| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
thermophila SB210]
Length = 1680
Score = 598 bits (1541), Expect = e-167, Method: Compositional matrix adjust.
Identities = 315/670 (47%), Positives = 409/670 (61%), Gaps = 135/670 (20%)
Query: 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFD 89
MSVE YQKK+QLEHILLRPDTY+GS E E MW++ + + E R+I YVP LYKIFD
Sbjct: 1 MSVETTYQKKTQLEHILLRPDTYVGSNEYQDEQMWVLADDGSSFENRQIKYVPALYKIFD 60
Query: 90 EILVNACDN------------------KQRDPKMNCIKITVNQETNTISVWNNGKGIPVV 131
EILVNA DN KQRD +M + + ++Q+ N IS+ N+GKGIPV
Sbjct: 61 EILVNAADNYQSDLMIDRKQTNTFQFYKQRDKRMKRLDVIIDQKNNCISILNDGKGIPVQ 120
Query: 132 EHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRN 191
HK+ ++VP +IF GHLLTSSNYNDEE KV GGRN
Sbjct: 121 IHKEYNIYVPELIF-------------------------GHLLTSSNYNDEEKKVVGGRN 155
Query: 192 GYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDL 251
G+GAKL NIFS+KF+VE++ S+ KK F+ W NMS+ + P+I S ++ D+TKITF PDL
Sbjct: 156 GFGAKLTNIFSTKFIVESADSKNKKKFQMTWTKNMSEQSEPQISSYTESDYTKITFYPDL 215
Query: 252 TKFKMTSLDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDG 310
KF M L+KD+VDL+ +R YD A VKV LNGE++ + +F DY Y Q G
Sbjct: 216 KKFHMKELEKDIVDLMKKRVYDMAGVIGGSVKVSLNGERISISSFSDYCDFYLKNQ---G 272
Query: 311 DPVKIIYENV---NPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEV 367
V + +N N RWEV + S+ FQQVSFVNSI T+KGG HV+ + D I ++++E
Sbjct: 273 AEVIKVSDNKGTNNQRWEVIASLSEGQFQQVSFVNSICTSKGGTHVNYITDQITEKLMET 332
Query: 368 VKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFIN 427
+KKK K L +K FQVK+H+WIF+N
Sbjct: 333 LKKKEKSLN------------------------------------IKQFQVKSHLWIFVN 356
Query: 428 CLIVNPTFDSQTKENMTLQKGSFGSTC--------------------------------- 454
CLI NP+FD+QTKE +TL++ SFGSTC
Sbjct: 357 CLIENPSFDTQTKETLTLRQQSFGSTCEVSEKFIKELLKSNIINHILLQARAKEQAKMAK 416
Query: 455 ------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFP 502
VPKLEDANDAGT+N+ CTLI+TEGDSAK+LA+SG+ VVGRDK+GVFP
Sbjct: 417 TLSAKKQSRLLGVPKLEDANDAGTRNAESCTLIITEGDSAKALAMSGIEVVGRDKFGVFP 476
Query: 503 LRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQD 562
L+GK+LNVR++T KQI EN EI N++K++G++ + Y V K+LRYG +MIM DQD D
Sbjct: 477 LKGKMLNVRDSTSKQITENLEIQNIIKVMGMKLNTNYDNV---KSLRYGSIMIMADQDHD 533
Query: 563 GSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN 621
GSHIKGL INFI + WP+L ++ FL+EFITPI+K K + +SF+S+ +F+ WK N
Sbjct: 534 GSHIKGLFINFIQNFWPSLFQMDGFLKEFITPIVKVRKGNQSISFFSIQDFKRWKSTCPN 593
Query: 622 WHTYKIKYYK 631
H +KIKYYK
Sbjct: 594 QHLWKIKYYK 603
Score = 115 bits (287), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 75/112 (66%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
++EP +Y+PIIP L+NGA+GIGTGW T IP +NPRE+VD+I++ + G + PWYK
Sbjct: 812 QVEPIYYLPIIPTALLNGADGIGTGWSTSIPCYNPRELVDSIEKRMMGVPFTDLLPWYKG 871
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGA 770
F GEI S+ V+G+ ++++ +EITEL + KW DYK+ L+ L
Sbjct: 872 FTGEISNNEKSQITVSGKYHLVNETTIEITELPIKKWIRDYKNFLEEKLEST 923
Score = 47.4 bits (111), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 815 KPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKK 874
K K QLE+++ Q + +E +T E K+Y+YLL + WSLT E+ E+ ++
Sbjct: 1068 KSSKLTSQLEQEQNQ----DSNEENFETNPNEINAKEYNYLLSLPMWSLTYEKVEEIKQE 1123
Query: 875 RDDKMTELNILKKKAPTDLWSDDL 898
+ +K EL+ L D+W +DL
Sbjct: 1124 QKNKQDELDKLVATEVIDIWKEDL 1147
>gi|327349241|gb|EGE78098.1| DNA topoisomerase 2 [Ajellomyces dermatitidis ATCC 18188]
Length = 1804
Score = 598 bits (1541), Expect = e-167, Method: Compositional matrix adjust.
Identities = 315/651 (48%), Positives = 399/651 (61%), Gaps = 119/651 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHI+ RPDTYIGS+E T MW+ N E+ ME RE++YVPGLYKIFDEILVNA
Sbjct: 134 YQKLTQLEHIIKRPDTYIGSIERSTNQMWVYNSESESMEFREVSYVPGLYKIFDEILVNA 193
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DN+ D M+ I++TVN+E+ ISVWNNG+GIP+ H EK+++P +IFGHLLTSSNYN
Sbjct: 194 ADNRHNDKNMDEIRVTVNRESGEISVWNNGRGIPIEIHSREKVYIPELIFGHLLTSSNYN 253
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D++ KVTGGRNGYGAKLCNIFS++F +ET+ S+ K
Sbjct: 254 -------------------------DDQQKVTGGRNGYGAKLCNIFSTEFTLETADSKLK 288
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K +KQ W DNMSK+ P+I DD+TK+TFTPD KF M +D D L+ RR YD A
Sbjct: 289 KKYKQTWTDNMSKMGKPKITDCKGDDYTKVTFTPDFKKFGMDGIDDDFEALVKRRVYDLA 348
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDR------QDEDGDPVKIIYENVNPRWEVAIA 329
+ K V V LNG ++PV+NF+ Y+++YT+ ++ D +II +N +PRWE+ A
Sbjct: 349 GTCK-VTVKLNGSRVPVRNFKQYMQMYTNAIKKERGEEASRDKSEIITDNPDPRWEIGFA 407
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ V D I +++EVVKKKNK
Sbjct: 408 VSDGSFQQVSFVNSIATTSGGSHVNTVADQICNKLVEVVKKKNK---------------- 451
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LKP Q++NHI++F+N IVNP F SQTKE +T +
Sbjct: 452 -------------------TGATLKPAQIRNHIFVFVNSQIVNPAFTSQTKEQLTTKPSQ 492
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS CV PKL DAN AGT
Sbjct: 493 FGSKCVLSDDFLKKILKTQVMENIMHFAEKKADQILKKSDGNRRSRMNNPKLTDANKAGT 552
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K+ CTLILTEGDSAK LA++G +VG D +GVFPLRGKLLNVR+A+ QI +NAEI N
Sbjct: 553 KDGHQCTLILTEGDSAKGLAMAGRAIVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQN 612
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ LGLQ+ K+YT D K LRYG LMIMTDQD DGSHIKGL+INF +P+LL++P
Sbjct: 613 IKNFLGLQHKKEYT---DTKGLRYGHLMIMTDQDHDGSHIKGLLINFFQVAFPSLLKIPQ 669
Query: 586 FLEEFITPIIKATKAREE-----LSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K + SF+++ E+E W E + ++ KYYK
Sbjct: 670 FLIEFITPIVKVWKGDPKNPTISKSFFTMQEYETWLEIHGHDKRWEKKYYK 720
Score = 137 bits (345), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 83/113 (73%), Gaps = 1/113 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y P++PM+L+NGA+GIGTGW T IPN+NP EIV NIKR++ GE +PM+PW++ F
Sbjct: 930 IEPETYFPVVPMILINGADGIGTGWSTSIPNYNPEEIVANIKRLMVGEPVVPMQPWFRGF 989
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
GE+ G R+ +G + + D+++EITEL + WT D+KD L+ ++ AEK
Sbjct: 990 TGEVVSMGGERYKFSGRFSQIGDNEIEITELPIRSWTQDFKDRLEEIIK-AEK 1041
Score = 57.4 bits (137), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 29/178 (16%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCP 911
+DYLLGM WSLT ER +L ++ DK E++ L K + D+W DLDA E+ K
Sbjct: 1213 FDYLLGMPLWSLTKERVEKLRRQIGDKEIEIDTLIKLSKEDIWRADLDAFLEEWKFQLED 1272
Query: 912 GGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDA----PPP---TKASPVKKKKP- 963
G R A K R + T + + +D+ P P K++ + + KP
Sbjct: 1273 EGRRQAKRA-KSARRVSTKLKTATKGGKKRKAADDDDSDFGLPKPKKSAKSTTINRIKPQ 1331
Query: 964 ----------AAKRPAPKSD-----SSDLSDSDGDSDF-----ASRKKKTAAAKKAKP 1001
A+++P P SD + S D + DF +RK + A++K KP
Sbjct: 1332 ADLLNYVSSNASRKPKPSSDKGFGGADGASGLDDEDDFEPEILPTRKPRAASSKPMKP 1389
>gi|26334167|dbj|BAC30801.1| unnamed protein product [Mus musculus]
Length = 507
Score = 598 bits (1541), Expect = e-167, Method: Compositional matrix adjust.
Identities = 302/542 (55%), Positives = 363/542 (66%), Gaps = 107/542 (19%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
+ K K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T
Sbjct: 27 TANKNDSTKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVT 85
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
+VPGLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++
Sbjct: 86 FVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVY 145
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCN 199
VP +IF G LLTSSNY+D+E KVTGGRNGYGAKLCN
Sbjct: 146 VPALIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCN 180
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSL 259
IFS+KF VET+C EYK SF+Q W +NM K + +IK +D+T ITF PDL+KFKM L
Sbjct: 181 IFSTKFTVETACKEYKHSFRQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKL 240
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYE 318
DKD+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E
Sbjct: 241 DKDIVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHE 300
Query: 319 NVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCT 378
N RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 301 LANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVSKLIEVVKKKNK----- 355
Query: 379 IIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQ 438
G+++KPFQVKNHIW+FINCLI NPTFDSQ
Sbjct: 356 ------------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQ 385
Query: 439 TKENMTLQKGSFGSTC-------------------------------------------- 454
TKENMTLQ SFGS C
Sbjct: 386 TKENMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIK 445
Query: 455 -VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREA 513
+PKL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA
Sbjct: 446 GIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREA 505
Query: 514 TH 515
+H
Sbjct: 506 SH 507
>gi|242062820|ref|XP_002452699.1| hypothetical protein SORBIDRAFT_04g030880 [Sorghum bicolor]
gi|241932530|gb|EES05675.1| hypothetical protein SORBIDRAFT_04g030880 [Sorghum bicolor]
Length = 1452
Score = 597 bits (1540), Expect = e-167, Method: Compositional matrix adjust.
Identities = 320/650 (49%), Positives = 414/650 (63%), Gaps = 116/650 (17%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E++YQKK+QLEHILLRPDTYIGSVE T+ +W+ E M R +TYVPGLYKIFDE
Sbjct: 21 TIEEMYQKKTQLEHILLRPDTYIGSVEKHTQPLWVF--EDGAMVNRSVTYVPGLYKIFDE 78
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNKQRDPKM+ +++ ++ + ISV+NNG GIPV H++E+++VP MIF
Sbjct: 79 ILVNAADNKQRDPKMDALRVQIDVDGCCISVYNNGDGIPVEIHQEERVYVPEMIF----- 133
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
GHLLTSSNYND E K TGGRNGYGAKL NIFS++FV+ET+
Sbjct: 134 --------------------GHLLTSSNYNDNEKKTTGGRNGYGAKLTNIFSTEFVIETA 173
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
+K +KQV+ +NM K + P+I K +++T++TF PDL KF M L++D+V L+ +
Sbjct: 174 DGRRQKKYKQVFSENMGKKSEPQITKCKQGENWTRVTFKPDLAKFNMAHLEEDVVALMRK 233
Query: 270 RAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDG-DPVKIIYENVNPRWEVA 327
R D A + K VKV L+G+++P+K+F DYV LY + D D K IYEN N RWEV
Sbjct: 234 RVVDMAGTLGKTVKVELDGQRVPIKSFSDYVNLYMKSANCDRPDNFKTIYEN-NDRWEVC 292
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S+ FQQVSFVN IAT +GG HVD + + I ++ VV KKNK+ +
Sbjct: 293 VCQSEGQFQQVSFVNRIATIRGGTHVDYITNQIANHVMTVVNKKNKNANMKL-------- 344
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
VK+H+W+F+N LI NP FDSQTKE +T ++
Sbjct: 345 ----------------------------HNVKSHLWVFVNALIDNPAFDSQTKETLTTRQ 376
Query: 448 GSFGS--------------------------------------------TCVPKLEDAND 463
GSFGS + +PKLEDAN+
Sbjct: 377 GSFGSKFELSIDFLKKVEKSSIIENVLSWADFKLSKELKKTDGSKKSRISGIPKLEDANE 436
Query: 464 AGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAE 523
AG K+S CTLILTEGDSAK+LA+SG+ VVGRD YGVFPLRGKLLNVREA HKQI+ENAE
Sbjct: 437 AGGKDSEKCTLILTEGDSAKALAMSGIAVVGRDYYGVFPLRGKLLNVREANHKQIMENAE 496
Query: 524 INNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR 583
I N+ +ILGLQ+ K+Y + K LRYG LMIMTDQD DGSHIKGL+INFIH WP+LL+
Sbjct: 497 IQNIKQILGLQHGKQYASA---KGLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSLLK 553
Query: 584 L-PFLEEFITPIIKATKAREELSFYSLPEFEEWKEET-TNWHTYKIKYYK 631
+ FL EF+TPIIKAT+ + +SFY++PE+EEW+ + ++ IKYYK
Sbjct: 554 VESFLVEFVTPIIKATRGKTTISFYTMPEYEEWRTNLGASASSWTIKYYK 603
Score = 139 bits (349), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/121 (51%), Positives = 87/121 (71%), Gaps = 5/121 (4%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY+PI+PMVLVNG+EGIGTGW T IPN+NPR+IV N++R++ E +PM PWY+ F
Sbjct: 813 IEPTWYMPILPMVLVNGSEGIGTGWSTFIPNYNPRDIVANLRRLLNEESTVPMHPWYRGF 872
Query: 720 KGEIDYCGDSRFV-----VNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
KG I+ +++ V V G I ++D+ +L ITEL + +WT DYK+ L++L KD+
Sbjct: 873 KGSIEKTVNTKVVGSTYTVTGIIEVVDNSRLRITELPIRRWTGDYKEFLESLGPDKNKDK 932
Query: 775 V 775
V
Sbjct: 933 V 933
Score = 44.3 bits (103), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK----DK 906
DY+YLL M +LT+E+ EL+ ++ + ++ LK +P LW DLDA ++ D+
Sbjct: 1099 DYEYLLAMPIGTLTLEKIQELIAEKQKLVDDVEELKNTSPKSLWLKDLDAFEKELDLLDQ 1158
Query: 907 IHPCPGGNRTRGLALKRQTRYQPS----NRVLTSRDEPMVVSSGEDAPPPTKASPVKKKK 962
+ R + + ++ R + + R + + V D A PV K+
Sbjct: 1159 MDLSEEEQREKRIKDGKKGRSKAAPKKQQRGKKAGSKAAVKKEKSDTEDDDAAEPVVPKR 1218
Query: 963 PAAKRPAPKSDSSDLSDSD 981
++ APK D + D
Sbjct: 1219 GGQQKKAPKKAPVDEEEFD 1237
>gi|392596931|gb|EIW86253.1| DNA topoisomerase II [Coniophora puteana RWD-64-598 SS2]
Length = 1558
Score = 597 bits (1540), Expect = e-167, Method: Compositional matrix adjust.
Identities = 307/677 (45%), Positives = 414/677 (61%), Gaps = 122/677 (18%)
Query: 13 QQNGNGPSPKKKTPA---NKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRE 69
+ + +G SP + A + + + Y K +QLEHIL RPD+YIGSVE I++ MW + E
Sbjct: 73 RDSADGSSPARPVAAPLRKQKTASETYTKLTQLEHILKRPDSYIGSVESISQAMWTWDSE 132
Query: 70 TNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIP 129
+ RE+ YVPG +KI DEILVNA DNK D M+ IK+ ++ E TISV NNGKGIP
Sbjct: 133 NKRLVHREVKYVPGFFKIVDEILVNAADNKINDATMDTIKVNIDVEEGTISVHNNGKGIP 192
Query: 130 VVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGG 189
+ H EKM++P +IFGHLL+SSNY +D+E K+TGG
Sbjct: 193 IEMHSKEKMYIPELIFGHLLSSSNY-------------------------DDDEKKLTGG 227
Query: 190 RNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFT 248
RNG+GAKL NI+S +F ++T+ + + +KQ W DNMSKV +I S+ +++TK++F
Sbjct: 228 RNGFGAKLANIYSHEFTIDTADKKTGQKYKQTWTDNMSKVGKAKITKNSRNEEYTKVSFK 287
Query: 249 PDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-----T 303
PDL +F M S+D D + L+ RR YD A + KDVKVFLN E+L VKNF+ Y +Y T
Sbjct: 288 PDLARFGMDSIDDDALSLLKRRVYDMAGTVKDVKVFLNDERLKVKNFKQYCDMYLESATT 347
Query: 304 DRQDEDGDPVK----IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDA 359
D + G + I+YE +N RWEVA A S+ FQQVSF NSIAT KGG HV+ + D
Sbjct: 348 DAAENSGGAAQVKPTILYEKINDRWEVAFAVSEGSFQQVSFANSIATIKGGTHVNLIADQ 407
Query: 360 IVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVK 419
+ K +I + KKNK ++KP Q+K
Sbjct: 408 LAKALITDITKKNK------------------------------------AASVKPAQIK 431
Query: 420 NHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--------------------------- 452
NH+WIF+N LI NPTFDSQTKE +TL FGS
Sbjct: 432 NHMWIFVNSLIENPTFDSQTKETLTLPSSKFGSRPHLSEEFMKKVSKSAIVEHVLNWAKF 491
Query: 453 -----------------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGR 495
T + KL DAN+AGT+ + +CTLILTEGDSAK+LAV+GLGVVGR
Sbjct: 492 KADQQIKKTDGTKRNRLTGLTKLADANNAGTRKADECTLILTEGDSAKALAVAGLGVVGR 551
Query: 496 DKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMI 555
D +GVFPLRGKLLNVREA H QI++N EI N+ KI+GLQ++K+Y+ + +LRYG+LMI
Sbjct: 552 DNFGVFPLRGKLLNVREAKHDQIMKNEEIQNIKKIMGLQHNKEYSNI---TSLRYGKLMI 608
Query: 556 MTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEE 614
M DQD DGSHIKGL+INF+ H +P+LL++P FL EF+TPI++ +K ++ F+++PE+E+
Sbjct: 609 MADQDHDGSHIKGLLINFLDHFYPSLLKIPNFLVEFVTPIVRVSKGKQRKDFFTIPEYEQ 668
Query: 615 WKEETTNWHTYKIKYYK 631
W E+T + H + KY+K
Sbjct: 669 WLEDTPDAHKWDSKYFK 685
Score = 128 bits (322), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 79/108 (73%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE+Y+P IP+VLVNGA+GIGTGW T IP NP +IV N++R++ GE+ +PM PW++ F
Sbjct: 895 IEPEFYMPTIPLVLVNGADGIGTGWSTTIPCFNPEDIVANLRRLMVGEEMVPMAPWWRGF 954
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
KGEI G++++ V G +DD +EITEL V +WT +K L+ ++
Sbjct: 955 KGEIKKTGENKYEVTGIARKVDDTTIEITELPVWEWTQSFKAKLEAMI 1002
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 828 RQAAEGEDDEAGSQTQEEEDPDK-------DYDYLLGMTFWSLTMERKNELLKKRDDKMT 880
+ A GE ++ Q E+++ D+ DYDYLLGM +SLT ER +LL++ +K
Sbjct: 1146 KAKAAGEFEDVVEQPDEDDEVDRAGHVTSTDYDYLLGMAIYSLTKERIQKLLQQAGEKEK 1205
Query: 881 ELNILKKKAPTDLWSDDLDAL 901
EL L ++ P +W++DLD
Sbjct: 1206 ELLALLERTPIGIWNEDLDGF 1226
>gi|225450069|ref|XP_002274267.1| PREDICTED: DNA topoisomerase 2-like [Vitis vinifera]
Length = 1489
Score = 597 bits (1539), Expect = e-167, Method: Compositional matrix adjust.
Identities = 330/670 (49%), Positives = 420/670 (62%), Gaps = 119/670 (17%)
Query: 12 VQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETN 71
+Q + N P K PA K ++E+ YQKKSQLEHILLRPDTYIGS+E T+ +W+ E N
Sbjct: 9 LQSSNNANMPAK--PAGK-TIEETYQKKSQLEHILLRPDTYIGSIEKHTQALWVF--ENN 63
Query: 72 HMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVV 131
M R ++YVPGLYKIFDEILVNA DNKQRDP M+ +K+ ++ E N ISV+NNG G+PV
Sbjct: 64 EMVHRSVSYVPGLYKIFDEILVNAADNKQRDPSMDSVKVVIDVEKNCISVYNNGDGVPVE 123
Query: 132 EHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRN 191
H++E ++VP MIF GHLLTSSNY+D+ K TGGRN
Sbjct: 124 IHQEEGVYVPEMIF-------------------------GHLLTSSNYDDDVKKTTGGRN 158
Query: 192 GYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPD 250
GYGAKL NIFS++FV+ET+ +K +KQV+ +NM K + P I K ++++TK++F PD
Sbjct: 159 GYGAKLTNIFSTEFVIETADGRRQKKYKQVFSNNMGKKSEPVITKCKERENWTKVSFKPD 218
Query: 251 LTKFKMTSLDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDED 309
L KF MT L+ D+V L+ +R D A K VKV LNG+++PVK+F DYV LY +
Sbjct: 219 LAKFNMTHLEDDVVALMKKRVVDIAGCLGKTVKVELNGQRIPVKSFNDYVNLYLQSAAKS 278
Query: 310 G-DPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVV 368
+ + I E VN RWE+ ++ S+ FQQVSFVNSIAT KGG HVD V + I ++ +V
Sbjct: 279 RPESLPRIAEKVNERWEICVSLSEGQFQQVSFVNSIATIKGGTHVDYVTNQIANFVMSIV 338
Query: 369 KKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINC 428
KKNK+ +K VKNH+W+F+N
Sbjct: 339 NKKNKN------------------------------------ANIKAHTVKNHLWVFVNA 362
Query: 429 LIVNPTFDSQTKENMTLQKGSFGSTC---------------------------------- 454
LI NP FDSQTKE +T+++ SFGS C
Sbjct: 363 LIDNPAFDSQTKETLTIRQSSFGSKCELSQEFLKKVSKSGVVESLLSWADYKQNKDLKKT 422
Query: 455 ----------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLR 504
+ KLEDANDAG +NS CTLILTEGDSAK+LA++G+ VVGR+ YGVFPLR
Sbjct: 423 DGTKRQRLTGITKLEDANDAGGRNSEKCTLILTEGDSAKALAMAGISVVGRNHYGVFPLR 482
Query: 505 GKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGS 564
GKLLNVR+A KQILENAEI N+ +ILGLQ K+Y ++ K+LRYG LMIMTDQD DGS
Sbjct: 483 GKLLNVRDAQKKQILENAEIQNIKQILGLQQGKEYDSI---KSLRYGHLMIMTDQDHDGS 539
Query: 565 HIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKAT-KAREELSFYSLPEFEEWKEET-TN 621
HIKGL+INFIH WP+LL++P FL EFITPI+KAT + LSFYS+PE+E WKE N
Sbjct: 540 HIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATHRNGRVLSFYSMPEYESWKESLGGN 599
Query: 622 WHTYKIKYYK 631
+ IKYYK
Sbjct: 600 ASGWSIKYYK 609
Score = 132 bits (332), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 83/118 (70%), Gaps = 5/118 (4%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY+P IPMVLVNG+EGIGTGW + IPN+NPR+I+ N++R++ GE PM PWY+ F
Sbjct: 819 IEPTWYVPTIPMVLVNGSEGIGTGWSSSIPNYNPRDIIANVRRLLNGEMMEPMDPWYRGF 878
Query: 720 KGEIDYCGDSR-----FVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
+G I+ ++ + V G I +++ L I+EL V KWT DYK+ L++++ G +K
Sbjct: 879 RGTIEKTDPTKQESVGYTVKGIIEEVNETTLRISELPVRKWTQDYKEFLESIMTGNDK 936
Score = 54.3 bits (129), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL-REKDKIHP 909
DY+YLL M +LT+E+ EL RD ++ LKK P LW DLDAL RE D+
Sbjct: 1110 DYEYLLSMAIGTLTLEKVQELCADRDKLNKGVDDLKKATPKALWITDLDALERELDE--- 1166
Query: 910 CPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAPPPTKASPVKKKKPAAKRPA 969
+ + A +TR Q +RV++ + M VS P +K A
Sbjct: 1167 -----QDKNDARAEETRKQLKSRVMS--EAGMKVSRQAPKNP-------RKNNKKANNAE 1212
Query: 970 PKSDSSDLSDSDG---DSDFASRKKKTAAAKKAKPAKKE 1005
P +++ D+S S +S K K AA + PAKK+
Sbjct: 1213 PAAETMDVSASSAMEMESVPEVVKPKGRAAPRKAPAKKK 1251
>gi|239610333|gb|EEQ87320.1| DNA topoisomerase 2 [Ajellomyces dermatitidis ER-3]
Length = 1804
Score = 597 bits (1539), Expect = e-167, Method: Compositional matrix adjust.
Identities = 315/651 (48%), Positives = 399/651 (61%), Gaps = 119/651 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHI+ RPDTYIGS+E T MW+ N E+ ME RE++YVPGLYKIFDEILVNA
Sbjct: 134 YQKLTQLEHIIKRPDTYIGSIERSTNQMWVYNSESESMEFREVSYVPGLYKIFDEILVNA 193
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DN+ D M+ I++TVN+E+ ISVWNNG+GIP+ H EK+++P +IFGHLLTSSNYN
Sbjct: 194 ADNRHNDKNMDEIRVTVNRESGEISVWNNGRGIPIEIHSREKVYIPELIFGHLLTSSNYN 253
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D++ KVTGGRNGYGAKLCNIFS++F +ET+ S+ K
Sbjct: 254 -------------------------DDQQKVTGGRNGYGAKLCNIFSTEFTLETADSKLK 288
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K +KQ W DNMSK+ P+I DD+TK+TFTPD KF M +D D L+ RR YD A
Sbjct: 289 KKYKQTWTDNMSKMGKPKITDCKGDDYTKVTFTPDFKKFGMDGIDDDFEALVKRRVYDLA 348
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDR------QDEDGDPVKIIYENVNPRWEVAIA 329
+ K V V LNG ++PV+NF+ Y+++YT+ ++ D +II +N +PRWE+ A
Sbjct: 349 GTCK-VTVKLNGSRVPVRNFKQYMQMYTNAIKKERGEEASRDKSEIITDNPDPRWEIGFA 407
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ V D I +++EVVKKKNK
Sbjct: 408 VSDGSFQQVSFVNSIATTSGGSHVNTVADQICNKLVEVVKKKNK---------------- 451
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LKP Q++NHI++F+N IVNP F SQTKE +T +
Sbjct: 452 -------------------TGATLKPAQIRNHIFVFVNSQIVNPAFTSQTKEQLTTKPSQ 492
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS CV PKL DAN AGT
Sbjct: 493 FGSKCVLSDDFLKKILKTQVMENIMHFAEKKADQILKKSDGNRRSRMNNPKLTDANKAGT 552
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K+ CTLILTEGDSAK LA++G +VG D +GVFPLRGKLLNVR+A+ QI +NAEI N
Sbjct: 553 KDGHHCTLILTEGDSAKGLAMAGRAIVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQN 612
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ LGLQ+ K+YT D K LRYG LMIMTDQD DGSHIKGL+INF +P+LL++P
Sbjct: 613 IKNFLGLQHKKEYT---DTKGLRYGHLMIMTDQDHDGSHIKGLLINFFQVAFPSLLKIPQ 669
Query: 586 FLEEFITPIIKATKAREE-----LSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K + SF+++ E+E W E + ++ KYYK
Sbjct: 670 FLIEFITPIVKVWKGDPKNPTISKSFFTMQEYETWLEIHGHDKRWEKKYYK 720
Score = 137 bits (344), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 83/113 (73%), Gaps = 1/113 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y P++PM+L+NGA+GIGTGW T IPN+NP EIV NIKR++ GE +PM+PW++ F
Sbjct: 930 IEPETYFPVVPMILINGADGIGTGWSTSIPNYNPEEIVANIKRLMVGEPVVPMQPWFRGF 989
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
GE+ G R+ +G + + D+++EITEL + WT D+KD L+ ++ AEK
Sbjct: 990 TGEVVSMGGERYKFSGRFSQIGDNEIEITELPIRSWTQDFKDRLEEIIK-AEK 1041
Score = 56.6 bits (135), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 29/178 (16%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCP 911
+DYLLGM WSLT ER +L ++ DK E++ L K + D+W DLDA E+ K
Sbjct: 1213 FDYLLGMPLWSLTKERVEKLRRQIGDKEIEIDTLIKLSKEDIWRADLDAFLEEWKFQLED 1272
Query: 912 GGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDA----PPP---TKASPVKKKKP- 963
G R A K R + T + + +D+ P P K++ + + KP
Sbjct: 1273 EGRRQAKRA-KSARRVSTKLKTATKGGKKRKAADDDDSDFGLPKPKKSAKSTTMNRIKPQ 1331
Query: 964 ----------AAKRPAPKSD-----SSDLSDSDGDSDF-----ASRKKKTAAAKKAKP 1001
A+++P P SD + S D + DF +RK + A++K KP
Sbjct: 1332 ADLLNYVSSNASRKPKPSSDKGFGGADGASGLDDEDDFEPEILPTRKPRAASSKPMKP 1389
>gi|261188733|ref|XP_002620780.1| DNA topoisomerase 2 [Ajellomyces dermatitidis SLH14081]
gi|239592012|gb|EEQ74593.1| DNA topoisomerase 2 [Ajellomyces dermatitidis SLH14081]
Length = 1758
Score = 597 bits (1539), Expect = e-167, Method: Compositional matrix adjust.
Identities = 317/651 (48%), Positives = 400/651 (61%), Gaps = 119/651 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHI+ RPDTYIGS+E T MW+ N E+ ME RE++YVPGLYKIFDEILVNA
Sbjct: 134 YQKLTQLEHIIKRPDTYIGSIERSTNQMWVYNSESESMEFREVSYVPGLYKIFDEILVNA 193
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DN+ D M+ I++TVN+E+ ISVWNNG+GIP+ H EK+++P +IFGHLLTSSNYN
Sbjct: 194 ADNRHNDKNMDEIRVTVNRESGEISVWNNGRGIPIEIHSREKVYIPELIFGHLLTSSNYN 253
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D++ KVTGGRNGYGAKLCNIFS++F +ET+ S+ K
Sbjct: 254 -------------------------DDQQKVTGGRNGYGAKLCNIFSTEFTLETADSKLK 288
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K +KQ W DNMSK+ P+I DD+TK+TFTPD KF M +D D L+ RR YD A
Sbjct: 289 KKYKQTWTDNMSKMGKPKITDCKGDDYTKVTFTPDFKKFGMDGIDDDFEALVKRRVYDLA 348
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDR-QDEDG-----DPVKIIYENVNPRWEVAIA 329
+ K V V LNG ++PV+NF+ Y+++YT+ + E G D +II +N +PRWE+ A
Sbjct: 349 GTCK-VTVKLNGSRVPVRNFKQYMQMYTNAIKKERGEEACRDKSEIITDNPDPRWEIGFA 407
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ V D I +++EVVKKKNK
Sbjct: 408 VSDGSFQQVSFVNSIATTSGGSHVNTVADQICNKLVEVVKKKNKT--------------- 452
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LKP Q++NHI++F+N IVNP F SQTKE +T +
Sbjct: 453 --------------------GATLKPAQIRNHIFVFVNSQIVNPAFTSQTKEQLTTKPSQ 492
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS CV PKL DAN AGT
Sbjct: 493 FGSKCVLSDDFLKKILKTQVMENIMHFAEKKADQILKKSDGNRRSRMNNPKLTDANKAGT 552
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K+ CTLILTEGDSAK LA++G +VG D +GVFPLRGKLLNVR+A+ QI +NAEI N
Sbjct: 553 KDGHHCTLILTEGDSAKGLAMAGRAIVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQN 612
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ LGLQ+ K+YT D K LRYG LMIMTDQD DGSHIKGL+INF +P+LL++P
Sbjct: 613 IKNFLGLQHKKEYT---DTKGLRYGHLMIMTDQDHDGSHIKGLLINFFQVAFPSLLKIPQ 669
Query: 586 FLEEFITPIIKATKAREE-----LSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K + SF+++ E+E W E + ++ KYYK
Sbjct: 670 FLIEFITPIVKVWKGDPKNPTISKSFFTMQEYETWLEIHGHDKRWEKKYYK 720
Score = 137 bits (345), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 83/113 (73%), Gaps = 1/113 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y P++PM+L+NGA+GIGTGW T IPN+NP EIV NIKR++ GE +PM+PW++ F
Sbjct: 930 IEPETYFPVVPMILINGADGIGTGWSTSIPNYNPEEIVANIKRLMVGEPVVPMQPWFRGF 989
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
GE+ G R+ +G + + D+++EITEL + WT D+KD L+ ++ AEK
Sbjct: 990 TGEVVSMGGERYKFSGRFSQIGDNEIEITELPIRSWTQDFKDRLEEIIK-AEK 1041
>gi|443895754|dbj|GAC73099.1| hypothetical protein PANT_8d00062 [Pseudozyma antarctica T-34]
Length = 2299
Score = 597 bits (1538), Expect = e-167, Method: Compositional matrix adjust.
Identities = 326/696 (46%), Positives = 417/696 (59%), Gaps = 133/696 (19%)
Query: 3 SDESDFDPDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITET 62
+D S D + + P P K AN S + YQK SQLEHIL RPDTYIGSVE TE
Sbjct: 1028 NDVSMMDSEADVSFQPPPPTKS--ANSKSASETYQKLSQLEHILKRPDTYIGSVEKHTEK 1085
Query: 63 MWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVW 122
+W+ ++ M RE TYVPG YKIFDEILVNA DNK RDP M +K+ +N+E N+I VW
Sbjct: 1086 LWVYDKTKQQMAYRETTYVPGFYKIFDEILVNAADNKARDPNMTHLKVDINREENSIMVW 1145
Query: 123 NNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDE 182
NNG GIPV H E++++P +IFGHLLTSSNY+ D
Sbjct: 1146 NNGHGIPVEMHDKERVYIPELIFGHLLTSSNYD-------------------------DN 1180
Query: 183 EDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DD 241
E KVTGGRNGYGAKL NI+S++F VET+ S+ + +KQ + NM P+I + D+
Sbjct: 1181 EAKVTGGRNGYGAKLANIYSTEFTVETADSKNQCKYKQTFSRNMHDKGKPKITPHKRQDE 1240
Query: 242 FTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKL 301
+T ITF PDL F M S+D M L+ +R YD A + K +KV LNGE L +K+F+ YV++
Sbjct: 1241 YTSITFKPDLALFGMDSIDDHMEALMLKRVYDMAGTVKGIKVTLNGELLKIKSFKQYVEM 1300
Query: 302 YTDRQDEDGD------------PV------KIIYENVNPR---WEVAIAPSDRGFQQVSF 340
Y +E G PV IIYE+ + WEVA A SD F+QVSF
Sbjct: 1301 YVTAINELGGSADQGENGAADMPVGATAKPAIIYESTVDKGRNWEVAFAVSDGEFRQVSF 1360
Query: 341 VNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKT 400
VN+IAT KGG+HVD V D ++ ++IE VKK K K
Sbjct: 1361 VNNIATIKGGKHVDHVADQVITRLIEHVKKDKK-----------------------TGKV 1397
Query: 401 LIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS-------- 452
L P QV+ +W+F+NC IVNPTFD QTKE +TL++ +FGS
Sbjct: 1398 L-------------PNQVRQQLWVFVNCQIVNPTFDGQTKETLTLKQSAFGSKWTLTDEF 1444
Query: 453 ------------------------------------TCVPKLEDANDAGTKNSIDCTLIL 476
T +PKLEDAN+AG + + DCTLIL
Sbjct: 1445 ARKVIKSGVVDNIVSFARYKQDQALKKTDGHKRTRITNIPKLEDANNAGGRKARDCTLIL 1504
Query: 477 TEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYS 536
TEGDSAK+LAVSGL VGRD YGVFPLRGKLLNVREA+H QI++N+EI + +ILGLQ+
Sbjct: 1505 TEGDSAKALAVSGLVEVGRDNYGVFPLRGKLLNVREASHDQIMKNSEIKAIKEILGLQHG 1564
Query: 537 KKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPII 595
K+Y D+ +LRYG +MIMTDQD DGSHIKGLIINF+ H +P+LL++P FL EFITPI+
Sbjct: 1565 KQYL---DVNSLRYGSIMIMTDQDHDGSHIKGLIINFLDHFYPSLLKIPGFLVEFITPIV 1621
Query: 596 KATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
K TK ++ELSF+++PE+ WKE+ N ++IKY+K
Sbjct: 1622 KCTKGKQELSFFTIPEYMTWKEQHNNGKGWRIKYFK 1657
Score = 145 bits (366), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 81/113 (71%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+P++P VL+NGAEGIGTGW T +PN+NP EIV NI+R + GE+ +PMKPWY+ F
Sbjct: 1867 IEPEWYMPVVPQVLMNGAEGIGTGWSTSVPNYNPHEIVANIRRRMAGEEVVPMKPWYRGF 1926
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G+ID RF V+G + +DD EITEL + WT+ YK+ L+ + EK
Sbjct: 1927 TGDIDEVAPGRFKVSGRVTQIDDKTYEITELPIRTWTSTYKEGLEERIVSTEK 1979
Score = 55.5 bits (132), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 825 RQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNI 884
+Q + A E ++A + + D DYDYLL M ++LT E+ ++LL +R+ K EL +
Sbjct: 2117 KQGKAAVAAEIEDAEPVDESDISADSDYDYLLNMAIYNLTKEKVDKLLNERNAKEEELRV 2176
Query: 885 LKKKAPTDLWSDDL 898
L + P +LW +DL
Sbjct: 2177 LIGRTPQNLWDEDL 2190
>gi|307110827|gb|EFN59062.1| hypothetical protein CHLNCDRAFT_137783 [Chlorella variabilis]
Length = 1566
Score = 596 bits (1537), Expect = e-167, Method: Compositional matrix adjust.
Identities = 327/672 (48%), Positives = 418/672 (62%), Gaps = 123/672 (18%)
Query: 12 VQQNGNGPSPKKKTP---ANK--MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLM 66
V +NG G K P ANK ++E+ YQK +Q+EH+LLRPDTYIGS E + +W+
Sbjct: 6 VSENG-GKVKAAKAPLAVANKGGKTIEETYQKVTQVEHVLLRPDTYIGSTERQQQQLWVH 64
Query: 67 NRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGK 126
+ E M + I +VPGLYKIFDEILVNA DNK RD M+ +++ V+ + +I V NNG
Sbjct: 65 DGE--RMVHKSIDFVPGLYKIFDEILVNAADNKVRDASMDTLRVDVDADKGSIKVMNNGA 122
Query: 127 GIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKV 186
GIPV HK E ++VP +IF G+LLTSSNYND E KV
Sbjct: 123 GIPVEVHKTEGIYVPELIF-------------------------GNLLTSSNYNDNEKKV 157
Query: 187 TGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDD-FTKI 245
TGGRNGYGAKL NIFS+KFVVET + + +KQ + NMSK P I D+ +T I
Sbjct: 158 TGGRNGYGAKLANIFSTKFVVETCDGKRGRRYKQTFTQNMSKKGQPVITDCKADENWTCI 217
Query: 246 TFTPDLTKFKMTSLDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTD 304
TF PDL +F M L+++ V+L+ +R YD A K VKVF NG++L VK+FQ+YV +Y
Sbjct: 218 TFYPDLARFGMEDLEQESVELMRKRVYDMAGLLGKTVKVFYNGQRLKVKSFQEYVDMYLG 277
Query: 305 RQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQI 364
+DE P ++ YE ++ RWEV IAP++ F QVSFVN+I T+KGG HV+ + D +VK +
Sbjct: 278 PKDEG--PTRV-YERISDRWEVCIAPTEGQFNQVSFVNAICTSKGGTHVNYISDQVVKYL 334
Query: 365 IEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWI 424
+++ KK+K K N +KPF KN++W+
Sbjct: 335 CDMINKKDK-----------------KAN-------------------VKPFMAKNYLWV 358
Query: 425 FINCLIVNPTFDSQTKENMTLQKGSFGSTC------------------------------ 454
F+NCLI NP FDSQTK+ +TL+ SFGS C
Sbjct: 359 FVNCLIENPAFDSQTKDTLTLRASSFGSKCDLPDAFLKKVANCGVVNSILSFASFKADKE 418
Query: 455 --------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGV 500
+PKLEDANDAG +NS CTLILTEGDSAKSLAV+GL VVGRD++GV
Sbjct: 419 LKKGDGAKRQRLTGIPKLEDANDAGGRNSAGCTLILTEGDSAKSLAVAGLSVVGRDRFGV 478
Query: 501 FPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQD 560
FPLRGKLLNVR+A+ QI NAEI N+ +ILGLQ+ K YT D K+LRYG LMIMTDQD
Sbjct: 479 FPLRGKLLNVRDASAAQITGNAEIQNIKQILGLQHGKVYT---DAKSLRYGHLMIMTDQD 535
Query: 561 QDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEET 619
DGSHIKGLI+N+ HH +P+LL+LP FL EFITPIIKATK +E +SFY++PE+EEW ET
Sbjct: 536 HDGSHIKGLIMNYFHHFYPSLLKLPGFLVEFITPIIKATKGKETISFYTMPEYEEW-SET 594
Query: 620 TNWHTYKIKYYK 631
N + IKY+K
Sbjct: 595 HNTRGWTIKYFK 606
Score = 136 bits (343), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 82/118 (69%), Gaps = 4/118 (3%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+P++P VLVNGAEGIGTGW T IPN NPR+IV N++ M+ GE P+ MKPWY+ F
Sbjct: 816 IEPEWYMPVVPTVLVNGAEGIGTGWSTSIPNFNPRDIVANLRLMLDGEQPVAMKPWYRGF 875
Query: 720 KGEIDYC----GDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKD 773
KG I+ + + G I +DD L+ITEL + KWT DYK+ L+ ++ +K+
Sbjct: 876 KGTIEEVPTKTSGKSYQICGVINQVDDTTLDITELPIRKWTQDYKEFLEEMVKPEDKN 933
>gi|57898980|dbj|BAD86854.1| DNA topoisomerase II [Coprinopsis cinerea]
Length = 1572
Score = 596 bits (1537), Expect = e-167, Method: Compositional matrix adjust.
Identities = 309/659 (46%), Positives = 407/659 (61%), Gaps = 120/659 (18%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
K S ++YQK +QLEHIL RPD+YIGS+E IT MW + ET M RE+ YVPG +KI
Sbjct: 96 KKSTSEMYQKLTQLEHILKRPDSYIGSIETITTPMWTYDSETKRMVHREVKYVPGFFKIV 155
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNK DP M+ +K+T++ E TISV+NNG+GIP+ H EKM++P MIFGHL
Sbjct: 156 DEILVNAADNKINDPSMDTLKVTIDVEEGTISVYNNGRGIPIEIHSKEKMYIPEMIFGHL 215
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
LTS+NY +D+E K+TGGRNGYGAKL NI+S +F VE
Sbjct: 216 LTSTNY-------------------------DDDEKKLTGGRNGYGAKLANIYSLEFTVE 250
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDLI 267
T+ + +KQ W DNMSK +I ++ +++T+ITF PDL +F M S+D+D V L+
Sbjct: 251 TADKNTSQKYKQTWTDNMSKCGKAKITKNTRGEEYTRITFRPDLKRFGMNSIDEDTVSLL 310
Query: 268 TRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDE-----DGDPVK----IIYE 318
RR +D A + KDVKVFLN E+L +KNF+ YV++Y E G + +I+E
Sbjct: 311 KRRVFDMAGTVKDVKVFLNDERLKIKNFKQYVEMYVSSVQEAAAEKSGGAAQPKQTVIHE 370
Query: 319 NVNPRWEVAIAPSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGC 377
++ RWE+A S G FQ VSF NSIAT+KGG HV+ + D I K ++ + KKNK
Sbjct: 371 QISDRWEIAYTLSTEGTFQHVSFANSIATSKGGTHVNYIADQISKALVTSISKKNK---- 426
Query: 378 TIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDS 437
G +KP Q++NH+W+F+ LIVNPTFDS
Sbjct: 427 --------------------------------GATVKPAQIRNHMWLFVKSLIVNPTFDS 454
Query: 438 QTKENMTLQKGSFGST-------------------------------------------- 453
QTKE +TL FGS
Sbjct: 455 QTKELLTLPSSKFGSKPTISDEFIKKVAKSGIVDNVLNWAKFKADQQMKRADGTKRSRLL 514
Query: 454 CVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREA 513
+ KL DAN+AGT+++ DCTLILTEGDSAK+LA++GLGVVGRD +GVFPLRGKLLNVREA
Sbjct: 515 GLAKLSDANNAGTRHAQDCTLILTEGDSAKALAIAGLGVVGRDNFGVFPLRGKLLNVREA 574
Query: 514 THKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINF 573
H QI++N EI N+ KI+GLQ++K YT + +LRYGRLMIMTDQD DGSHIKGLIINF
Sbjct: 575 RHDQIMKNEEIQNIKKIMGLQHNKDYT---NTSSLRYGRLMIMTDQDHDGSHIKGLIINF 631
Query: 574 IHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+ H +P+LL++P FL EF+TPI++ K + F+++PE+E+W EET + ++ KYYK
Sbjct: 632 LDHFYPSLLKIPDFLVEFVTPIVRVKKGNKVKDFFTIPEYEQWLEETPDARKWESKYYK 690
Score = 133 bits (335), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 79/108 (73%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+P +PMVL+NGAEGIGTGW T IP +NP +IV N++RM++ E+P PM PW++ F
Sbjct: 900 IEPEWYMPTVPMVLINGAEGIGTGWSTNIPPYNPVDIVANLRRMMKEEEPEPMTPWWRGF 959
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
KGE+ G ++ V G ++D +EI+EL + KWT +KD L+ ++
Sbjct: 960 KGEVRPTGKGKYDVVGVATKINDTTVEISELPIHKWTRTFKDELEAMI 1007
Score = 60.8 bits (146), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 69/135 (51%), Gaps = 9/135 (6%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDA-LREKDKIHP 909
D+DYLLGM +SLT ER +L ++ +K EL L +K+PTDLW+ DLD L E +K
Sbjct: 1198 DFDYLLGMAIYSLTRERIEKLKQQAHEKEQELLALLEKSPTDLWNTDLDKFLEEWEKDCM 1257
Query: 910 CPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAPP----PTKASPVKKKKPAA 965
+ G A+ + R Q R L +R + G+D+ P K + K+KPA
Sbjct: 1258 IFEQKKGEGGAVNGKKRKQ---RTLKTRKSIGMGRRGKDSDDDDFVPIKPNAAAKRKPAE 1314
Query: 966 -KRPAPKSDSSDLSD 979
KRP S + D
Sbjct: 1315 PKRPVASSSTKKEDD 1329
>gi|392861752|gb|EAS31980.2| DNA topoisomerase 2 [Coccidioides immitis RS]
Length = 1718
Score = 596 bits (1536), Expect = e-167, Method: Compositional matrix adjust.
Identities = 313/651 (48%), Positives = 397/651 (60%), Gaps = 119/651 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQ+EHI+ RPDTYIGS+E + MW+ N T+ ME RE++YVPGLYKIFDEILVNA
Sbjct: 137 YQKLSQVEHIIKRPDTYIGSIERTQQNMWVYNSTTDQMEYREVSYVPGLYKIFDEILVNA 196
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQRD M+ IK+T++ E ISVWNNG+GIPV H EK+++P +IFGHLLTSSNY+
Sbjct: 197 ADNKQRDNNMSEIKVTLDMEAGEISVWNNGRGIPVEIHSKEKIYIPELIFGHLLTSSNYD 256
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D E+ KVTGGRNGYGAKLCNIFS++F VET+ S K
Sbjct: 257 D-------------------------EQAKVTGGRNGYGAKLCNIFSTEFTVETADSRSK 291
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K ++Q W+DNMSK+ +I +D+TKITF PD KF M +D D L+ RR YD A
Sbjct: 292 KKYRQTWQDNMSKMRKAKITESKGNDYTKITFKPDFKKFGMEGMDADFEALVKRRVYDLA 351
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDG-DPVKIIYENVNPRWEVAIA 329
+ + V V LNG ++P+ NF+ Y+++YT +R +E D +I+ ++ PRWE+ A
Sbjct: 352 GTCR-VTVRLNGSRIPISNFKKYMEMYTKAIKRERGEEAASDKSEIVTDSTEPRWEIGFA 410
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ + D I ++ + VKKKNK
Sbjct: 411 VSDGSFQQVSFVNSIATTSGGTHVNYISDQICSKLADAVKKKNK---------------- 454
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LKP Q++NHI++F+NCLIVNP F SQTKE +T ++
Sbjct: 455 -------------------TGPLLKPAQIRNHIFLFVNCLIVNPAFTSQTKEQLTTKQSQ 495
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS CV PKL DAN AGT
Sbjct: 496 FGSKCVLSEEFLKKILKTQVMQNIMHFAEQKADQILKKTDGSRRARMNNPKLTDANKAGT 555
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +N EI N
Sbjct: 556 KEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNQEIQN 615
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ LGLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +P+LL++P
Sbjct: 616 IKNFLGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPSLLKIPG 672
Query: 586 FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K SF++LPE+EEWK+ + + KYYK
Sbjct: 673 FLIEFITPIVKVWKGDPKNPTASKSFFTLPEYEEWKKSHGHDRRWDKKYYK 723
Score = 132 bits (332), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 82/113 (72%), Gaps = 2/113 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++PM+L+NGA+GIGTGW T IPN NP +IV N++R++ GE +PMKPW++ F
Sbjct: 933 IEPEVYVPVVPMILINGADGIGTGWSTSIPNFNPEDIVANLRRLMDGESLVPMKPWFRGF 992
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
GE+ GD R+ +G I D ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 993 TGEVTASGD-RYKFSGIIKQTGDCEVEITELPIRTWTQDFKDKLEEIIK-AEK 1043
Score = 55.1 bits (131), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 63/150 (42%), Gaps = 33/150 (22%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCP 911
+DYLLGM WSLT ER +LL++ DK E++ L K + DLW DLD + +
Sbjct: 1212 FDYLLGMPLWSLTQERVEKLLRQIGDKELEIDALIKLSKEDLWKRDLDEFITEWRNQ--- 1268
Query: 912 GGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAPPPTKASPVKKKKPAAKRPAPK 971
L+ + R R R + ++G P KK+ A
Sbjct: 1269 ---------LEDEERRAKKARSYGRRTSTKLKTAGR--------GPAGKKRKA------- 1304
Query: 972 SDSSDLSDSDGDSDFASRKKKTAAAKKAKP 1001
L D D DSDFA + KK K KP
Sbjct: 1305 -----LGDDD-DSDFAPKAKKATVVNKVKP 1328
>gi|224007473|ref|XP_002292696.1| topoisomerase [Thalassiosira pseudonana CCMP1335]
gi|220971558|gb|EED89892.1| topoisomerase [Thalassiosira pseudonana CCMP1335]
Length = 1172
Score = 596 bits (1536), Expect = e-167, Method: Compositional matrix adjust.
Identities = 326/663 (49%), Positives = 414/663 (62%), Gaps = 129/663 (19%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETN------HMERREITYVPGL 84
++E+ YQ K+QLEHILLRPDTYIGS EP+T+ M++++ TN + +RE+TY PG
Sbjct: 2 TIEETYQMKTQLEHILLRPDTYIGSTEPLTQPMFVLSTTTNTPPSPPRIIQREVTYTPGF 61
Query: 85 YKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMI 144
KI+DEI+VNA DNKQRDP M+ + + ++ E ISV NNGKGIPVV HKD+ +VPTMI
Sbjct: 62 LKIYDEIIVNAADNKQRDPNMDRLDVDIDVEGGVISVCNNGKGIPVVIHKDQGCYVPTMI 121
Query: 145 FGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSK 204
FGHLLT SN++D+E K TGGRNGYGAKL NIFS++
Sbjct: 122 -------------------------FGHLLTGSNFDDDEMKTTGGRNGYGAKLANIFSTE 156
Query: 205 FVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGS-----KDDFTKITFTPDLTKFKMTSL 259
F+VE S FKQV+++NM K P+IK S K D+TKITF PD KF MT L
Sbjct: 157 FIVECVDSNEGLKFKQVFRNNMHKTEEPKIKKCSASEMKKGDYTKITFKPDFEKFSMTRL 216
Query: 260 DKDMVDLITRRAYDAAAST-----KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVK 314
++D V L+ +RAYD A + K + V+LNG+KL VK F+ Y+ L+ DG
Sbjct: 217 NEDAVGLLAKRAYDIAGTMGSKEGKKLSVYLNGKKLSVKGFKSYLALF------DGINPP 270
Query: 315 IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKD 374
YE V RWEV I+ SD FQQ+SFVNSI+TTKGG HVD + + +V ++ ++VKKKNK
Sbjct: 271 AAYEKVGDRWEVGISVSDGSFQQISFVNSISTTKGGGHVDHIAEMVVTRLKDLVKKKNK- 329
Query: 375 LGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPT 434
GG +KP Q+KNH+ IF+NCL+ NP
Sbjct: 330 ----------------------------------GGAHVKPAQIKNHLSIFVNCLVENPK 355
Query: 435 FDSQTKENMTLQKGSFGS------------------------------------------ 452
FDSQTKEN+T +K +F S
Sbjct: 356 FDSQTKENLTTKKSTFRSEVQLSEKFLKQVDKCGVVDSIMAYAKFKEGQALKRKGGTKKN 415
Query: 453 --TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNV 510
T + KL+DAN AGT S DCTLI+TEGDSAKSLAVSGL VVGRD YGVFPL+GK LNV
Sbjct: 416 KLTGITKLDDANHAGTAKSKDCTLIITEGDSAKSLAVSGLSVVGRDFYGVFPLKGKPLNV 475
Query: 511 REATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLI 570
R+ATH QI++N EI+NLV I+GL++ YT E++K+LRYG LMIMTDQD DGSHIKGLI
Sbjct: 476 RDATHFQIMKNEEISNLVAIMGLKFDTTYTE-ENIKSLRYGHLMIMTDQDHDGSHIKGLI 534
Query: 571 INFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN-WHTYKIK 628
INF+H WP+LL +P FL +FITPI+K TK ++ +F++LPE+EEWKE T N + IK
Sbjct: 535 INFLHKFWPSLLDIPDFLMQFITPIVKCTKGKKFHTFFTLPEYEEWKEGTGNDAKGWTIK 594
Query: 629 YYK 631
YYK
Sbjct: 595 YYK 597
Score = 133 bits (334), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/117 (53%), Positives = 82/117 (70%), Gaps = 3/117 (2%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE+Y+P+IPMVLVNG++GIGTGW + I NH+PRE++ NIK+MI GE+P M P + F
Sbjct: 814 IEPEYYMPVIPMVLVNGSDGIGTGWSSTIQNHDPREVIANIKKMINGEEPELMHPHFAGF 873
Query: 720 KGEIDYCGDSR---FVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKD 773
GEI SR ++V G+I D L ITEL VGKWT +YK L+ L+ G +KD
Sbjct: 874 TGEITAESGSREGSYIVEGKIERTGDTTLLITELPVGKWTQNYKAFLEGLMSGTDKD 930
Score = 60.8 bits (146), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 826 QERQAAEGEDDEAGSQTQEEEDPD----KDYDYLLGMTFWSLTMERKNELLKKRDDKMTE 881
+E AE +D++ ++ EE D K Y+YLLGM WSLT ER EL +++ +K +
Sbjct: 1069 KESNQAETDDEDESMESVEENASDAELAKGYEYLLGMKIWSLTFERAKELRRQKTEKAED 1128
Query: 882 LNILKKKAPTDLWSDDLDALRE 903
+ L+ +P +W DLDA+ E
Sbjct: 1129 VEKLEGTSPEAIWQTDLDAIEE 1150
>gi|391864315|gb|EIT73611.1| DNA topoisomerase type II [Aspergillus oryzae 3.042]
Length = 1730
Score = 596 bits (1536), Expect = e-167, Method: Compositional matrix adjust.
Identities = 314/656 (47%), Positives = 403/656 (61%), Gaps = 119/656 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+V + YQK +QLEHI+ RPDTYIGS+E ++ MW+ + E++ ME RE++YVPGLYKIFDE
Sbjct: 123 NVSEKYQKLTQLEHIIKRPDTYIGSIERTSQQMWVYSTESDGMEFREVSYVPGLYKIFDE 182
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
I+VNA DNKQ D M+ I++T+++ET ISVWNNG+GIP+ H EK++VP +IF
Sbjct: 183 IVVNAADNKQNDANMDEIRVTISRETGEISVWNNGRGIPIEMHAKEKIYVPELIF----- 237
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
GHLLTSSNY+D + KVTGGRNG+GAKLCN+FS++F +ET
Sbjct: 238 --------------------GHLLTSSNYDDTQQKVTGGRNGFGAKLCNVFSTEFSIETQ 277
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
S KK +KQ W NM+K+ +I DD+TK+TF PD KF M +D D L+ RR
Sbjct: 278 DSRQKKKYKQTWTSNMTKMGKAKITDAKGDDYTKVTFKPDYAKFGMDGMDNDFEALVKRR 337
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD---RQDEDGDPV---KIIYENVNPRW 324
YD A + K V V LNG ++PV+NF+ Y+++YT R+ D P +II + +PRW
Sbjct: 338 VYDLAGTAK-VAVKLNGSRVPVRNFKKYMEMYTKAIRRERGDDGPAAKDEIITCSPDPRW 396
Query: 325 EVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFG 384
EV A SD FQQVSFVNSIATT GG HV+ + D I ++ + VKKKNK+
Sbjct: 397 EVGFAVSDGSFQQVSFVNSIATTSGGTHVNYIADQICSKLADQVKKKNKN---------- 446
Query: 385 NKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT 444
G LKP Q++NHI+IF+N IVNP F SQTKE +T
Sbjct: 447 -------------------------GATLKPAQIRNHIFIFVNAQIVNPAFTSQTKEQLT 481
Query: 445 LQKGSFGSTCV-------------------------------------------PKLEDA 461
+ FGS CV PKL DA
Sbjct: 482 TKSSQFGSKCVLEEDFYKKILKTDVMSNILHFAQQKADQMLKKTDGGRRARMNNPKLTDA 541
Query: 462 NDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILEN 521
N AGTK+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+AT +QI +N
Sbjct: 542 NKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDATFEQISKN 601
Query: 522 AEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTL 581
AEI N+ LGLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+INF+ +P+L
Sbjct: 602 AEIQNIKNFLGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINFLQAQFPSL 658
Query: 582 LRLP-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
LR+P FL EFITPIIK K ++ SF+++PE+E WKEE + ++ KYYK
Sbjct: 659 LRIPEFLIEFITPIIKVWKGDPKNPTKQRSFFTMPEYEAWKEEHKHERGWEHKYYK 714
Score = 136 bits (343), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE Y+P++PM+LVNGA+GIGTGW + IPN+NP +IVDN+KR++ GE+ PM+PW++
Sbjct: 923 KIEPEIYVPVVPMILVNGADGIGTGWSSSIPNYNPEDIVDNLKRLMDGEETRPMQPWFRG 982
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F GE+ G RF +G I + ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 983 FTGEVTDVGGDRFKFSGIIKETGEKEVEITELPIRTWTQDFKDKLEDIIK-AEK 1035
Score = 50.8 bits (120), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
YDYLLGM WSLT ER +L ++ +K E++ L K + D+W DLD
Sbjct: 1206 YDYLLGMAIWSLTQERVEKLRRQIGEKEVEVDALIKMSKEDIWKRDLD 1253
>gi|297736284|emb|CBI24922.3| unnamed protein product [Vitis vinifera]
Length = 1452
Score = 596 bits (1536), Expect = e-167, Method: Compositional matrix adjust.
Identities = 330/670 (49%), Positives = 420/670 (62%), Gaps = 119/670 (17%)
Query: 12 VQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETN 71
+Q + N P K PA K ++E+ YQKKSQLEHILLRPDTYIGS+E T+ +W+ E N
Sbjct: 9 LQSSNNANMPAK--PAGK-TIEETYQKKSQLEHILLRPDTYIGSIEKHTQALWVF--ENN 63
Query: 72 HMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVV 131
M R ++YVPGLYKIFDEILVNA DNKQRDP M+ +K+ ++ E N ISV+NNG G+PV
Sbjct: 64 EMVHRSVSYVPGLYKIFDEILVNAADNKQRDPSMDSVKVVIDVEKNCISVYNNGDGVPVE 123
Query: 132 EHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRN 191
H++E ++VP MIF GHLLTSSNY+D+ K TGGRN
Sbjct: 124 IHQEEGVYVPEMIF-------------------------GHLLTSSNYDDDVKKTTGGRN 158
Query: 192 GYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPD 250
GYGAKL NIFS++FV+ET+ +K +KQV+ +NM K + P I K ++++TK++F PD
Sbjct: 159 GYGAKLTNIFSTEFVIETADGRRQKKYKQVFSNNMGKKSEPVITKCKERENWTKVSFKPD 218
Query: 251 LTKFKMTSLDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDED 309
L KF MT L+ D+V L+ +R D A K VKV LNG+++PVK+F DYV LY +
Sbjct: 219 LAKFNMTHLEDDVVALMKKRVVDIAGCLGKTVKVELNGQRIPVKSFNDYVNLYLQSAAKS 278
Query: 310 G-DPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVV 368
+ + I E VN RWE+ ++ S+ FQQVSFVNSIAT KGG HVD V + I ++ +V
Sbjct: 279 RPESLPRIAEKVNERWEICVSLSEGQFQQVSFVNSIATIKGGTHVDYVTNQIANFVMSIV 338
Query: 369 KKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINC 428
KKNK+ +K VKNH+W+F+N
Sbjct: 339 NKKNKN------------------------------------ANIKAHTVKNHLWVFVNA 362
Query: 429 LIVNPTFDSQTKENMTLQKGSFGSTC---------------------------------- 454
LI NP FDSQTKE +T+++ SFGS C
Sbjct: 363 LIDNPAFDSQTKETLTIRQSSFGSKCELSQEFLKKVSKSGVVESLLSWADYKQNKDLKKT 422
Query: 455 ----------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLR 504
+ KLEDANDAG +NS CTLILTEGDSAK+LA++G+ VVGR+ YGVFPLR
Sbjct: 423 DGTKRQRLTGITKLEDANDAGGRNSEKCTLILTEGDSAKALAMAGISVVGRNHYGVFPLR 482
Query: 505 GKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGS 564
GKLLNVR+A KQILENAEI N+ +ILGLQ K+Y ++ K+LRYG LMIMTDQD DGS
Sbjct: 483 GKLLNVRDAQKKQILENAEIQNIKQILGLQQGKEYDSI---KSLRYGHLMIMTDQDHDGS 539
Query: 565 HIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKAT-KAREELSFYSLPEFEEWKEET-TN 621
HIKGL+INFIH WP+LL++P FL EFITPI+KAT + LSFYS+PE+E WKE N
Sbjct: 540 HIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATHRNGRVLSFYSMPEYESWKESLGGN 599
Query: 622 WHTYKIKYYK 631
+ IKYYK
Sbjct: 600 ASGWSIKYYK 609
Score = 132 bits (331), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 83/118 (70%), Gaps = 5/118 (4%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY+P IPMVLVNG+EGIGTGW + IPN+NPR+I+ N++R++ GE PM PWY+ F
Sbjct: 819 IEPTWYVPTIPMVLVNGSEGIGTGWSSSIPNYNPRDIIANVRRLLNGEMMEPMDPWYRGF 878
Query: 720 KGEIDYCGDSR-----FVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
+G I+ ++ + V G I +++ L I+EL V KWT DYK+ L++++ G +K
Sbjct: 879 RGTIEKTDPTKQESVGYTVKGIIEEVNETTLRISELPVRKWTQDYKEFLESIMTGNDK 936
Score = 54.3 bits (129), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL-REKDKIHP 909
DY+YLL M +LT+E+ EL RD ++ LKK P LW DLDAL RE D+
Sbjct: 1073 DYEYLLSMAIGTLTLEKVQELCADRDKLNKGVDDLKKATPKALWITDLDALERELDE--- 1129
Query: 910 CPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAPPPTKASPVKKKKPAAKRPA 969
+ + A +TR Q +RV++ + M VS P +K A
Sbjct: 1130 -----QDKNDARAEETRKQLKSRVMS--EAGMKVSRQAPKNP-------RKNNKKANNAE 1175
Query: 970 PKSDSSDLSDSDG---DSDFASRKKKTAAAKKAKPAKKE 1005
P +++ D+S S +S K K AA + PAKK+
Sbjct: 1176 PAAETMDVSASSAMEMESVPEVVKPKGRAAPRKAPAKKK 1214
>gi|429965699|gb|ELA47696.1| hypothetical protein VCUG_00778 [Vavraia culicis 'floridensis']
Length = 1224
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 324/678 (47%), Positives = 415/678 (61%), Gaps = 149/678 (21%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
K ++E++YQKK+ +EHILLRP+TYIGSV+ T+ M+++ E + + ITYVPGLYKIF
Sbjct: 3 KKTIEQLYQKKTPIEHILLRPETYIGSVDHHTQPMYVL--ENGKIVSKSITYVPGLYKIF 60
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNK RDP M+ K+ V+ + ISVWNNGKG+P+ HK EK++VP +IF
Sbjct: 61 DEILVNAADNKIRDPSMS--KLCVDVVDDRISVWNNGKGVPIQMHKKEKVYVPELIF--- 115
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFSS+F++E
Sbjct: 116 ----------------------GQLLTSSNYDDKEKKVTGGRNGYGAKLCNIFSSEFIIE 153
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLI 267
T+ S+ ++ Q + DNMSK P I K ++ FTKITF PDL +FKM LD+D+V L+
Sbjct: 154 TADSKENMTYYQRYTDNMSKREEPVITKQRVRESFTKITFVPDLKRFKMEHLDEDIVSLL 213
Query: 268 TRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVA 327
+R YD A+ K VKVFLNGE++P+ +F+ YV LY D VK+++E VN RWEVA
Sbjct: 214 KKRVYDMCATIKKVKVFLNGEQIPIVSFKQYVSLYL------ADDVKVVHEVVNERWEVA 267
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ SD FQQVSFVNSI T KGG HV+ V+D +V +IE V+KK+K L
Sbjct: 268 VVLSDEQFQQVSFVNSICTIKGGTHVNHVLDQLVDPVIERVQKKDKSL------------ 315
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
+KPF V+N +++F+N LI N FDSQTKE +TL+
Sbjct: 316 ------------------------VIKPFFVRNSVFVFVNALIENAAFDSQTKETLTLRV 351
Query: 448 GSFGSTC-------------------------------------------VPKLEDANDA 464
SFGS C V KL DAN A
Sbjct: 352 SSFGSRCTLSDDFVKQTVAILSDRVLSQALAKMSKQLKKTDGSKSSKITGVEKLSDANLA 411
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
GTKNS C+LILTEGDSAK+LA+SGL VVGRD YGVFPLRGKLLNVREA HKQI+EN E+
Sbjct: 412 GTKNSHKCSLILTEGDSAKTLAISGLSVVGRDHYGVFPLRGKLLNVREANHKQIMENEEL 471
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
NNL KIL LQ+ K+YT+ E +LRYG ++IMTDQD DGSHIKGLIINF H +P+LLR+
Sbjct: 472 NNLKKILALQHHKEYTSTE---SLRYGHVIIMTDQDHDGSHIKGLIINFFDHFFPSLLRI 528
Query: 585 P-FLEEFITPIIKATKAREE------------------------------LSFYSLPEFE 613
FL+EFITPI++ TK + + F+++PE+E
Sbjct: 529 EGFLKEFITPIVRVTKKKRSRTQNDNPEDDSDVQEVPRNSTRTDHSVGTVIDFFTIPEYE 588
Query: 614 EWKEETTNWHTYKIKYYK 631
+WK T + + +KYYK
Sbjct: 589 DWKNSTPDVKNWSVKYYK 606
Score = 120 bits (301), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 83/116 (71%), Gaps = 1/116 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP +Y+PI+PMVLVNGA+GIGTGW+TKIPN++ E++DNIK ++ G++ M P+Y+
Sbjct: 815 KIEPAFYVPIVPMVLVNGADGIGTGWLTKIPNYDLLELIDNIKLLLDGQEMRTMVPFYRG 874
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
FKGEI+ G ++ ++G I ++++ L ITEL V WT YK+ L+ + E E
Sbjct: 875 FKGEIEDLGGKKYRISG-IYGVEEESLTITELPVKIWTQTYKEFLEKKIEKGEVKE 929
>gi|393906249|gb|EJD74229.1| hypothetical protein LOAG_18426 [Loa loa]
Length = 554
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 304/539 (56%), Positives = 366/539 (67%), Gaps = 105/539 (19%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITET-MWLMNRETNHMERREITYVPGLYKI 87
++S+EKIYQKKSQLEHILLRPDTYIGSVE T MW+ + ET+ + +REI+YVPGLYKI
Sbjct: 74 RLSIEKIYQKKSQLEHILLRPDTYIGSVEYTDRTPMWVYDTETDRIVQREISYVPGLYKI 133
Query: 88 FDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGH 147
FDEILVNA DNKQRDPKMN IK+ +N+E N IS++NNG+GIPVV HK EK++VP +IF
Sbjct: 134 FDEILVNAADNKQRDPKMNLIKVNINKEENEISIYNNGRGIPVVLHKIEKLYVPELIF-- 191
Query: 148 LLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVV 207
G LLTSSNY+D E KVTGGRNGYGAKLCNIFS +F +
Sbjct: 192 -----------------------GTLLTSSNYDDSERKVTGGRNGYGAKLCNIFSKEFTL 228
Query: 208 ETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLI 267
ETS +EY+K+FKQ W +NMSK P+I + ++DFT++TF PDL KFKMT LD D+V L+
Sbjct: 229 ETSTNEYEKAFKQTWVNNMSKGEEPKITTSKREDFTRVTFKPDLAKFKMTKLDDDIVALM 288
Query: 268 TRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQ-DEDGDPVKIIYENVNPRWEV 326
RRAYD A ST+ VKVFLN +++PV+ F+ YV+ Y D +G+ K++YE+V+PRWEV
Sbjct: 289 CRRAYDIAGSTRGVKVFLNNKQIPVQGFKQYVEQYVKHNVDNNGEAYKVVYESVSPRWEV 348
Query: 327 AIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNK 386
A+ SD+GFQQVSF NSIATTKGGRHVD VVD I ++I+V+KKK
Sbjct: 349 ALTISDKGFQQVSFANSIATTKGGRHVDYVVDQIASKLIDVIKKK--------------- 393
Query: 387 FNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ 446
IG + GG+ +KPFQ+KNH+WIF+N LI NPTFDSQTKE MTLQ
Sbjct: 394 -----------------IG-KSGGINVKPFQIKNHMWIFVNALIENPTFDSQTKETMTLQ 435
Query: 447 KGSFGSTC---------------------------------------------VPKLEDA 461
SFGSTC VPKLEDA
Sbjct: 436 SKSFGSTCELSEKFIQAALKCGIVEAIMAWVRFKQQETLDKKCSSKKTSKLKGVPKLEDA 495
Query: 462 NDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILE 520
NDAGTKNS CTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGK+LNVRE HKQ+++
Sbjct: 496 NDAGTKNSAQCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKMLNVREGNHKQVID 554
>gi|255076711|ref|XP_002502027.1| predicted protein [Micromonas sp. RCC299]
gi|226517292|gb|ACO63285.1| predicted protein [Micromonas sp. RCC299]
Length = 1459
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 325/670 (48%), Positives = 419/670 (62%), Gaps = 118/670 (17%)
Query: 13 QQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNH 72
+++ N P + ++ ++E IYQKK+QLEHILLRPDTY+GS E E W+ ++TN
Sbjct: 35 EKDVNAAKPASSSSSDGKAIEDIYQKKTQLEHILLRPDTYVGSCEKTEEKAWVYCKDTNK 94
Query: 73 MERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVE 132
+ +R++++VPGLYKIFDEILVNA DNK RDP M +++ ++QE I V+N+G GIPV
Sbjct: 95 LVQRQMSFVPGLYKIFDEILVNATDNKVRDPSMVTLRVDIDQEAGCIRVYNDGNGIPVEM 154
Query: 133 HKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNG 192
HK+E ++VP +IFGHLLTSSNYN D E KVTGGRNG
Sbjct: 155 HKEEGVYVPELIFGHLLTSSNYN-------------------------DNEKKVTGGRNG 189
Query: 193 YGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDL 251
YGAKL NIFS++FVVET ++ ++QV+K+NM + P + K D++T ITF PDL
Sbjct: 190 YGAKLANIFSTEFVVETCDGSRERRYRQVFKNNMGEKCEPVVTKCKPTDNWTCITFKPDL 249
Query: 252 TKFKMTSLDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDG 310
KF MT L+ D V L+ +R YDAA + K+ KVFLNGE+L VK F DYV LY + ++
Sbjct: 250 AKFNMTELEDDTVALMCKRVYDAAGNIGKNTKVFLNGERLKVKGFSDYVDLYLEGREN-- 307
Query: 311 DPVKIIYENVNPRWEVAIAPSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVK 369
+YE VN RWEV + SD G FQQVSFVN I T KGG HV+ V D + +++E +K
Sbjct: 308 --APKVYEKVNDRWEVCVTISDSGNFQQVSFVNGICTMKGGTHVNQVADEVAGKLLEKIK 365
Query: 370 KKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCL 429
KK K + KN LK VKNH+W+F+N L
Sbjct: 366 KKEK---------------SCKN--------------------LKAAHVKNHLWVFVNAL 390
Query: 430 IVNPTFDSQTKENMTLQKGSFGS------------------------------------- 452
I NP FDSQTKE + + +FGS
Sbjct: 391 IENPAFDSQTKETLNTRASNFGSKYEASDKVIKQMMNSGIVEQILSWASFKQSKEMKKSD 450
Query: 453 -------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRG 505
T +PKL+DANDAG +NS CTLILTEGDSAK+LAVSGL VVGRD+YGVFPLRG
Sbjct: 451 GKKATRLTGIPKLDDANDAGGRNSEHCTLILTEGDSAKALAVSGLSVVGRDRYGVFPLRG 510
Query: 506 KLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSH 565
KLLNVR+A+H QI+ NAEIN++ +ILGL++ TT E K+LRYG +MIMTDQD DGSH
Sbjct: 511 KLLNVRDASHDQIMNNAEINHIKQILGLRHG---TTYESAKSLRYGHIMIMTDQDHDGSH 567
Query: 566 IKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWK---EETTN 621
IKGL+INF+H ++P+LL++P FL EFITPIIKATK ++ FY+LPE++ WK EET
Sbjct: 568 IKGLLINFLHAHFPSLLKIPGFLVEFITPIIKATKGKQSKVFYTLPEYDNWKEHAEETGT 627
Query: 622 WHTYKIKYYK 631
+ IKYYK
Sbjct: 628 GRGWNIKYYK 637
Score = 132 bits (333), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/117 (53%), Positives = 83/117 (70%), Gaps = 3/117 (2%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+PI+P+VLVNGA+GIGTGW T IPN NPR+IV NI+R++ E M PWY+NF
Sbjct: 847 IEPEHYLPILPLVLVNGADGIGTGWSTSIPNFNPRDIVANIRRILDDECTERMHPWYRNF 906
Query: 720 KGEID---YCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKD 773
KG I+ G+ R+ + G+ I+D+ L ITEL + WTTDYKD L+ +L EK+
Sbjct: 907 KGTIEEEIVKGEIRYNITGKYEIVDETTLVITELPLRSWTTDYKDFLENMLSPKEKN 963
Score = 44.3 bits (103), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
YDYLL M W+LT E+ +EL++++ K E+ L LW DLDA
Sbjct: 1135 YDYLLSMPLWNLTQEKVDELVEEQRVKTAEVEELHGTTDKQLWIRDLDAF 1184
>gi|317158221|ref|XP_001826919.2| DNA topoisomerase 2 [Aspergillus oryzae RIB40]
Length = 1700
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 314/656 (47%), Positives = 403/656 (61%), Gaps = 119/656 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+V + YQK +QLEHI+ RPDTYIGS+E ++ MW+ + E++ ME RE++YVPGLYKIFDE
Sbjct: 123 NVSEKYQKLTQLEHIIKRPDTYIGSIERTSQQMWVYSTESDGMEFREVSYVPGLYKIFDE 182
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
I+VNA DNKQ D M+ I++T+++ET ISVWNNG+GIP+ H EK++VP +IF
Sbjct: 183 IVVNAADNKQNDANMDEIRVTISRETGEISVWNNGRGIPIEMHAKEKIYVPELIF----- 237
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
GHLLTSSNY+D + KVTGGRNG+GAKLCN+FS++F +ET
Sbjct: 238 --------------------GHLLTSSNYDDTQQKVTGGRNGFGAKLCNVFSTEFSIETQ 277
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
S KK +KQ W NM+K+ +I DD+TK+TF PD KF M +D D L+ RR
Sbjct: 278 DSRQKKKYKQTWTSNMTKMGKAKITDAKGDDYTKVTFKPDYAKFGMDGMDNDFEALVKRR 337
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD---RQDEDGDPV---KIIYENVNPRW 324
YD A + K V V LNG ++PV+NF+ Y+++YT R+ D P +II + +PRW
Sbjct: 338 VYDLAGTAK-VAVKLNGSRVPVRNFKKYMEMYTKAIRRERGDDGPAAKDEIITCSPDPRW 396
Query: 325 EVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFG 384
EV A SD FQQVSFVNSIATT GG HV+ + D I ++ + VKKKNK+
Sbjct: 397 EVGFAVSDGSFQQVSFVNSIATTSGGTHVNYIADQICSKLADQVKKKNKN---------- 446
Query: 385 NKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT 444
G LKP Q++NHI+IF+N IVNP F SQTKE +T
Sbjct: 447 -------------------------GATLKPAQIRNHIFIFVNAQIVNPAFTSQTKEQLT 481
Query: 445 LQKGSFGSTCV-------------------------------------------PKLEDA 461
+ FGS CV PKL DA
Sbjct: 482 TKSSQFGSKCVLEEDFYKKILKTDVMSNILHFAQQKADQMLKKTDGGRRARMNNPKLTDA 541
Query: 462 NDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILEN 521
N AGTK+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+AT +QI +N
Sbjct: 542 NKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDATFEQISKN 601
Query: 522 AEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTL 581
AEI N+ LGLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+INF+ +P+L
Sbjct: 602 AEIQNIKNFLGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINFLQAQFPSL 658
Query: 582 LRLP-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
LR+P FL EFITPIIK K ++ SF+++PE+E WKEE + ++ KYYK
Sbjct: 659 LRIPEFLIEFITPIIKVWKGDPKNPTKQRSFFTMPEYEAWKEEHKHERGWEHKYYK 714
Score = 136 bits (343), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE Y+P++PM+LVNGA+GIGTGW + IPN+NP +IVDN+KR++ GE+ PM+PW++
Sbjct: 903 KIEPEIYVPVVPMILVNGADGIGTGWSSSIPNYNPEDIVDNLKRLMDGEETRPMQPWFRG 962
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F GE+ G RF +G I + ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 963 FTGEVTDVGGDRFKFSGIIKETGEKEVEITELPIRTWTQDFKDKLEDIIK-AEK 1015
Score = 50.8 bits (120), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
YDYLLGM WSLT ER +L ++ +K E++ L K + D+W DLD
Sbjct: 1176 YDYLLGMAIWSLTQERVEKLRRQIGEKEVEVDALIKMSKEDIWKRDLD 1223
>gi|356555329|ref|XP_003545986.1| PREDICTED: DNA topoisomerase 2-like [Glycine max]
Length = 1484
Score = 595 bits (1534), Expect = e-166, Method: Compositional matrix adjust.
Identities = 327/654 (50%), Positives = 416/654 (63%), Gaps = 118/654 (18%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
K ++E++YQKK+QLEHILLRPDTY+GSVE T+T+W+ E + M R ++YVPGLYKIF
Sbjct: 25 KKTIEEMYQKKTQLEHILLRPDTYVGSVEKHTQTLWVY--ENDEMVHRAVSYVPGLYKIF 82
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDP M+ +K+T+N E NT+SV+NNG G+PV H++EK++VP +IF
Sbjct: 83 DEILVNAADNKQRDPSMDALKVTINAEANTVSVFNNGDGVPVEIHQEEKVYVPELIF--- 139
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
GHLLTSSNYND E K TGGRNGYGAKL NIFS++FV+E
Sbjct: 140 ----------------------GHLLTSSNYNDNEKKTTGGRNGYGAKLTNIFSTEFVIE 177
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLI 267
T+ + +K +KQV+ +NM K + P I K +++TK+TF PDL KFKM L++D+V L+
Sbjct: 178 TADGKRQKKYKQVFSNNMGKKSEPVITKCKVGENWTKVTFKPDLEKFKMDYLEEDVVALM 237
Query: 268 TRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKI--IYENVNPRW 324
+R D A K VKV LNG+ + +K+F+DY LY + E PV + I+ V RW
Sbjct: 238 KKRVVDMAGCLGKTVKVELNGQVIRMKSFRDYADLYL-KSAEKSRPVPLPRIHAKVGERW 296
Query: 325 EVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFG 384
E+ ++ SD FQQVSFVNSIAT KGG HVD V + I ++ V KK KD
Sbjct: 297 EICVSLSDGQFQQVSFVNSIATIKGGTHVDYVTNQITNFVMNKVNKKKKDAN-------- 348
Query: 385 NKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT 444
+K VKNH+W+F+N LI NP FDSQTKE +T
Sbjct: 349 ----------------------------VKAHNVKNHLWVFVNSLIDNPAFDSQTKETLT 380
Query: 445 LQKGSFGSTC--------------------------------------------VPKLED 460
++ SFGS C + KLED
Sbjct: 381 TRQASFGSKCDIPESMLKEVANSGIVDTLLSWADFKQSKDLKKSDGTKTQRLRGIVKLED 440
Query: 461 ANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILE 520
ANDAG +NS CTLILTEGDSAK+LA++GL VVGRD YGVFPLRGKLLNVREA+ KQI++
Sbjct: 441 ANDAGGRNSEKCTLILTEGDSAKALAMAGLSVVGRDHYGVFPLRGKLLNVREASSKQIMD 500
Query: 521 NAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPT 580
N EI N+ KILGLQ +K+YT+V K+LRYG LMIM DQD DGSHIKGL+INFIH WP+
Sbjct: 501 NEEIQNIKKILGLQQNKEYTSV---KSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPS 557
Query: 581 LLRLP-FLEEFITPIIKATKAR-EELSFYSLPEFEEWKEETTNWHT-YKIKYYK 631
LL++P F+ EF TPII+A + +LSFYS+PE+E W+E N T +KIKYYK
Sbjct: 558 LLKVPSFMVEFTTPIIRAFHSNGTKLSFYSMPEYESWRESLGNNATGWKIKYYK 611
Score = 139 bits (351), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 84/115 (73%), Gaps = 2/115 (1%)
Query: 658 GR-IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWY 716
GR IEP WYIP+IP+VLVNG+EGIGTGW + IPN+NPR+I+ N++R++ GE +PM PWY
Sbjct: 818 GRCIEPNWYIPVIPLVLVNGSEGIGTGWSSYIPNYNPRDIIANVRRLLSGETMVPMDPWY 877
Query: 717 KNFKGEIDYC-GDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGA 770
K FKG I+ + +VVNG + +++ ITEL V KWT DYK L+++ G+
Sbjct: 878 KGFKGTIERSPKEGGYVVNGSVEEINEQTFRITELPVRKWTQDYKQFLESITDGS 932
>gi|389750841|gb|EIM91914.1| type II DNA topoisomerase [Stereum hirsutum FP-91666 SS1]
Length = 1489
Score = 595 bits (1533), Expect = e-166, Method: Compositional matrix adjust.
Identities = 315/673 (46%), Positives = 412/673 (61%), Gaps = 121/673 (17%)
Query: 17 NGPSPKKKTPA-NKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMER 75
+GPS + PA K + ++YQK SQLEHIL RPD+YIGSVE IT+ +W + +T M
Sbjct: 12 SGPSAPRAVPAAKKKNASEMYQKLSQLEHILKRPDSYIGSVETITQNIWTYDSDTKRMVL 71
Query: 76 REITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKD 135
R++ YVPG +KI DEILVNA DNK DP M+ +K+ ++ E+++ISV+NNG+GIP+ H
Sbjct: 72 RDVKYVPGFFKIVDEILVNAADNKINDPNMDTLKVEIDVESSSISVFNNGRGIPIEIHSK 131
Query: 136 EKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGA 195
EK+++P MIFGHLL+SSNY +D+E K+TGGRNGYGA
Sbjct: 132 EKIYIPEMIFGHLLSSSNY-------------------------DDDEKKLTGGRNGYGA 166
Query: 196 KLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKF 254
KL NI+S +F V+T+ + +KQ W DNM KV +I K+ +++TK+TF PDL +F
Sbjct: 167 KLANIYSHEFTVDTADKNSGQKYKQTWSDNMGKVGKAKITKNARGEEYTKVTFKPDLARF 226
Query: 255 KMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-----TDRQDED 309
M S+D D V L+ +R YD A + KD+KVFLNGE++ VK F+ YV++Y +
Sbjct: 227 GMDSIDDDTVSLLKKRVYDMAGTVKDIKVFLNGERIKVKGFKSYVEMYLTSAAEAAAETS 286
Query: 310 GDPVK----IIYENVNPRWEVAIAPSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQI 364
G + IYE +N RWEVA A S G FQ VSF NSI+T KGG HV V D I K I
Sbjct: 287 GGAAQAKPSFIYERINDRWEVAFACSLEGQFQHVSFANSISTIKGGTHVTTVSDQIAKNI 346
Query: 365 IEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWI 424
I+VVK KNK G L P +VK+ +W+
Sbjct: 347 IQVVKSKNK------------------------------------GAQLTPAKVKDQMWV 370
Query: 425 FINCLIVNPTFDSQTKENMTLQKGSFGS-------------------------------- 452
F+N LI NPTFDSQTKE MTL FGS
Sbjct: 371 FVNGLIENPTFDSQTKETMTLPVSKFGSKPTLSEDFLKKVNKSAVIERVLNWAQFKAQQE 430
Query: 453 ------------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGV 500
+ KL DAN+AGTKN+ CTLILTEGDSAK+LAV+GLGVVGRD +GV
Sbjct: 431 IKKTDGTKRTRLAGMTKLADANNAGTKNASKCTLILTEGDSAKALAVAGLGVVGRDNFGV 490
Query: 501 FPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQD 560
FPLRGK+LNVREA H QI++N EI N+ KI+GLQ +K Y+ + +LRYGRLMIMTDQD
Sbjct: 491 FPLRGKMLNVREAKHDQIMKNEEIQNIKKIMGLQSNKDYS---NTSSLRYGRLMIMTDQD 547
Query: 561 QDGSHIKGLIINFIHHNWPTLLRL-PFLEEFITPIIKATKAREELSFYSLPEFEEWKEET 619
DGSHIKGL+INF+ H +P+LL+L FL EF+TPI++ TK ++ + F+++PE+E+W E T
Sbjct: 548 HDGSHIKGLLINFLDHFFPSLLKLDDFLVEFVTPIVRVTKGKDRIDFFTIPEYEKWLEVT 607
Query: 620 TNWHTYKIKYYKV 632
+ H + KYYK
Sbjct: 608 PDAHRWTSKYYKA 620
Score = 154 bits (389), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 64/108 (59%), Positives = 86/108 (79%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+P++PMVLVNGAEGIGTGW T IPN+NP EIVDN++RM++GED +PM PWY+ F
Sbjct: 832 IEPEWYMPVLPMVLVNGAEGIGTGWSTSIPNYNPEEIVDNLRRMMKGEDVVPMSPWYRGF 891
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
KGEI GD+++ V G + ++D +EITEL + KWT YK L++++
Sbjct: 892 KGEIKKTGDNKYDVFGCVRKVNDTTVEITELPIHKWTQTYKGELESMI 939
Score = 47.0 bits (110), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPC 910
D+DYLL M SLT E+ LL++ DK EL L K P ++W+ DLD E + H
Sbjct: 1114 DFDYLLQMAISSLTKEKIARLLQQARDKEEELFQLLKLTPVEIWNTDLDKFLEAYRAHNA 1173
Query: 911 PGGNRT 916
R+
Sbjct: 1174 ERDQRS 1179
>gi|121308839|dbj|BAF43524.1| DNA topoisomerase II [Coprinopsis cinerea]
Length = 1569
Score = 595 bits (1533), Expect = e-166, Method: Compositional matrix adjust.
Identities = 308/659 (46%), Positives = 406/659 (61%), Gaps = 120/659 (18%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
K S ++YQK +QLEHIL RPD+YIGS+E IT MW + ET M RE+ YVPG +KI
Sbjct: 96 KKSTSEMYQKLTQLEHILKRPDSYIGSIETITTPMWTYDSETKRMVHREVKYVPGFFKIV 155
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNK DP M+ +K+T++ E TISV+NNG+GIP+ H EKM++P MIFGHL
Sbjct: 156 DEILVNAADNKINDPSMDTLKVTIDVEEGTISVYNNGRGIPIEIHSKEKMYIPEMIFGHL 215
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
LTS+NY +D+E K+TGGRNGYGAKL NI+S +F VE
Sbjct: 216 LTSTNY-------------------------DDDEKKLTGGRNGYGAKLANIYSLEFTVE 250
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDLI 267
T+ + +KQ W DNMSK +I ++ +++T+ITF PDL +F M S+D+D V L+
Sbjct: 251 TADKNTSQKYKQTWTDNMSKCGKAKITKNTRGEEYTRITFRPDLKRFGMNSIDEDTVSLL 310
Query: 268 TRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDE-----DGDPVK----IIYE 318
RR +D A + KDVKVFLN E+L +KNF+ YV++Y E G + +I+E
Sbjct: 311 KRRVFDMAGTVKDVKVFLNDERLKIKNFKQYVEMYVSSVQEAAAEKSGGAAQPKQTVIHE 370
Query: 319 NVNPRWEVAIAPSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGC 377
++ RWE+A S G FQ VSF NSIAT+KGG HV+ + D I K ++ + KKNK
Sbjct: 371 QISDRWEIAYTLSTEGTFQHVSFANSIATSKGGTHVNYIADQISKALVTSISKKNK---- 426
Query: 378 TIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDS 437
G +KP Q++NH+W+F+ LIVNPTFDS
Sbjct: 427 --------------------------------GATVKPAQIRNHMWLFVKSLIVNPTFDS 454
Query: 438 QTKENMTLQKGSFGST-------------------------------------------- 453
QTKE +TL FGS
Sbjct: 455 QTKELLTLPSSKFGSKPTISDEFIKKVAKSGIVDNVLNWAKFKADQQMKRADGTKRSRLL 514
Query: 454 CVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREA 513
+ KL DAN+AGT+++ DCTLILTEGDSAK+LA++GLGVVGRD +GVFPLRGKLLNVREA
Sbjct: 515 GLAKLSDANNAGTRHAQDCTLILTEGDSAKALAIAGLGVVGRDNFGVFPLRGKLLNVREA 574
Query: 514 THKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINF 573
H QI++N EI N+ KI+GLQ++K YT + +LRYGRLMIMTDQD DGSHIKGLIINF
Sbjct: 575 RHDQIMKNEEIQNIKKIMGLQHNKDYT---NTSSLRYGRLMIMTDQDHDGSHIKGLIINF 631
Query: 574 IHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+ H +P+LL++P FL EF+TPI++ K + F+++PE+E+W EE + ++ KYYK
Sbjct: 632 LDHFYPSLLKIPDFLVEFVTPIVRVKKGNKVKDFFTIPEYEQWLEEAPDARKWESKYYK 690
Score = 133 bits (335), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 79/108 (73%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+P +PMVL+NGAEGIGTGW T IP +NP +IV N++RM++ E+P PM PW++ F
Sbjct: 900 IEPEWYMPTVPMVLINGAEGIGTGWSTNIPPYNPVDIVANLRRMMKEEEPEPMTPWWRGF 959
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
KGE+ G ++ V G ++D +EI+EL + KWT +KD L+ ++
Sbjct: 960 KGEVRPTGKGKYDVVGVATKINDTTVEISELPIHKWTRTFKDELEAMI 1007
Score = 60.8 bits (146), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 69/135 (51%), Gaps = 9/135 (6%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDA-LREKDKIHP 909
D+DYLLGM +SLT ER +L ++ +K EL L +K+PTDLW+ DLD L E +K
Sbjct: 1198 DFDYLLGMAIYSLTRERIEKLKQQAHEKEQELLALLEKSPTDLWNTDLDKFLEEWEKDCM 1257
Query: 910 CPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAPP----PTKASPVKKKKPAA 965
+ G A+ + R Q R L +R + G+D+ P K + K+KPA
Sbjct: 1258 IFEQKKGEGGAVNGKKRKQ---RTLKTRKSIGMGRRGKDSDDDDFVPIKPNAAAKRKPAE 1314
Query: 966 -KRPAPKSDSSDLSD 979
KRP S + D
Sbjct: 1315 PKRPVASSSTKKEDD 1329
>gi|303322098|ref|XP_003071042.1| DNA topoisomerase II, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240110741|gb|EER28897.1| DNA topoisomerase II, putative [Coccidioides posadasii C735 delta
SOWgp]
Length = 1717
Score = 594 bits (1532), Expect = e-166, Method: Compositional matrix adjust.
Identities = 312/651 (47%), Positives = 397/651 (60%), Gaps = 119/651 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQ+EHI+ RPDTYIGS+E + MW+ N T+ ME RE++YVPGLYKIFDEILVNA
Sbjct: 137 YQKLSQVEHIIKRPDTYIGSIERTQQNMWVYNSTTDQMEYREVSYVPGLYKIFDEILVNA 196
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQRD M+ IK+T++ E ISVWNNG+GIPV H EK+++P +IFGHLLTSSNY
Sbjct: 197 ADNKQRDNNMSEIKVTLDMEAGEISVWNNGRGIPVEIHSKEKIYIPELIFGHLLTSSNY- 255
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
+D++ KVTGGRNGYGAKLCNIFS++F VET+ S K
Sbjct: 256 ------------------------DDDQAKVTGGRNGYGAKLCNIFSTEFTVETADSRSK 291
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K ++Q W+DNMSK+ +I +D+TKITF PD KF M +D D L+ RR YD A
Sbjct: 292 KKYRQTWQDNMSKMGKAKITESKGNDYTKITFKPDFKKFGMEGMDADFEALVKRRVYDLA 351
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDG-DPVKIIYENVNPRWEVAIA 329
+ + V V LNG ++P+ NF+ Y+++YT +R +E D +I+ ++ PRWE+ A
Sbjct: 352 GTCR-VTVRLNGSRIPISNFKKYMEMYTKAIKRERGEEAASDKSEIVTDSTEPRWEIGFA 410
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ + D I ++ + VKKKNK
Sbjct: 411 VSDGSFQQVSFVNSIATTSGGTHVNYISDQICSKLADAVKKKNK---------------- 454
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LKP Q++NHI++F+NCLIVNP F SQTKE +T ++
Sbjct: 455 -------------------TGPLLKPAQIRNHIFLFVNCLIVNPAFTSQTKEQLTTKQSQ 495
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS CV PKL DAN AGT
Sbjct: 496 FGSKCVLSEEFLKKILKTQVMQNIMHFAEQKADQILKKTDGSRRARMNNPKLTDANKAGT 555
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +N EI N
Sbjct: 556 KEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNQEIQN 615
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ LGLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +P+LL++P
Sbjct: 616 IKNFLGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPSLLKIPG 672
Query: 586 FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K SF++LPE+EEWK+ + + KYYK
Sbjct: 673 FLIEFITPIVKVWKGDPKNPTASKSFFTLPEYEEWKKSHGHDRRWDKKYYK 723
Score = 131 bits (330), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 82/113 (72%), Gaps = 2/113 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++PM+L+NGA+GIGTGW T IPN NP ++V N++R++ GE +PMKPW++ F
Sbjct: 933 IEPEVYVPVVPMILINGADGIGTGWSTSIPNFNPEDVVANLRRLMDGESLVPMKPWFRGF 992
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
GE+ GD R+ +G I D ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 993 TGEVTASGD-RYKFSGIIKQTGDCEVEITELPIRTWTQDFKDKLEEIIK-AEK 1043
Score = 55.5 bits (132), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 80/174 (45%), Gaps = 32/174 (18%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD--------ALRE 903
+DYLLGM WSLT ER +LL++ DK E++ L K + DLW DLD L +
Sbjct: 1211 FDYLLGMPLWSLTQERVEKLLRQIGDKELEIDALIKLSKEDLWKRDLDEFITEWRNQLED 1270
Query: 904 KDKIHPCPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGED-----APPPTKASPV 958
+++ + R + T+ + + R S+ + G+D AP KA+ V
Sbjct: 1271 EER-----RAKKARSYGRRTSTKLKTAGRGPASKKRKAL---GDDDDSDFAPKAKKATVV 1322
Query: 959 KKKKPAA------KRPAPKS--DSSDLSDSDGDSDFASR---KKKTAAAKKAKP 1001
K KP +PA KS ++ L + DF + +KK+ AA KP
Sbjct: 1323 NKVKPKGGLLDYLSKPAAKSKTKATRLDSTSETEDFEAEVIPQKKSRAASSKKP 1376
>gi|320032749|gb|EFW14700.1| DNA topoisomerase 2 [Coccidioides posadasii str. Silveira]
Length = 1717
Score = 594 bits (1532), Expect = e-166, Method: Compositional matrix adjust.
Identities = 312/651 (47%), Positives = 397/651 (60%), Gaps = 119/651 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQ+EHI+ RPDTYIGS+E + MW+ N T+ ME RE++YVPGLYKIFDEILVNA
Sbjct: 137 YQKLSQVEHIIKRPDTYIGSIERTQQNMWVYNSTTDQMEYREVSYVPGLYKIFDEILVNA 196
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQRD M+ IK+T++ E ISVWNNG+GIPV H EK+++P +IFGHLLTSSNY
Sbjct: 197 ADNKQRDNNMSEIKVTLDMEAGEISVWNNGRGIPVEIHSKEKIYIPELIFGHLLTSSNY- 255
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
+D++ KVTGGRNGYGAKLCNIFS++F VET+ S K
Sbjct: 256 ------------------------DDDQAKVTGGRNGYGAKLCNIFSTEFTVETADSRSK 291
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K ++Q W+DNMSK+ +I +D+TKITF PD KF M +D D L+ RR YD A
Sbjct: 292 KKYRQTWQDNMSKMGKAKITESKGNDYTKITFKPDFKKFGMEGMDADFEALVKRRVYDLA 351
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDG-DPVKIIYENVNPRWEVAIA 329
+ + V V LNG ++P+ NF+ Y+++YT +R +E D +I+ ++ PRWE+ A
Sbjct: 352 GTCR-VTVRLNGSRIPISNFKKYMEMYTKAIKRERGEEAASDKSEIVTDSTEPRWEIGFA 410
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ + D I ++ + VKKKNK
Sbjct: 411 VSDGSFQQVSFVNSIATTSGGTHVNYISDQICSKLADAVKKKNK---------------- 454
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LKP Q++NHI++F+NCLIVNP F SQTKE +T ++
Sbjct: 455 -------------------TGPLLKPAQIRNHIFLFVNCLIVNPAFTSQTKEQLTTKQSQ 495
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS CV PKL DAN AGT
Sbjct: 496 FGSKCVLSEEFLKKILKTQVMQNIMHFAEQKADQILKKTDGSRRARMNNPKLTDANKAGT 555
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +N EI N
Sbjct: 556 KEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNQEIQN 615
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ LGLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +P+LL++P
Sbjct: 616 IKNFLGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPSLLKIPG 672
Query: 586 FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K SF++LPE+EEWK+ + + KYYK
Sbjct: 673 FLIEFITPIVKVWKGDPKNPTASKSFFTLPEYEEWKKSHGHDRRWDKKYYK 723
Score = 131 bits (330), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 82/113 (72%), Gaps = 2/113 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++PM+L+NGA+GIGTGW T IPN NP ++V N++R++ GE +PMKPW++ F
Sbjct: 933 IEPEVYVPVVPMILINGADGIGTGWSTSIPNFNPEDVVANLRRLMDGESLVPMKPWFRGF 992
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
GE+ GD R+ +G I D ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 993 TGEVTASGD-RYKFSGIIKQTGDCEVEITELPIRTWTQDFKDKLEEIIK-AEK 1043
Score = 55.5 bits (132), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 80/174 (45%), Gaps = 32/174 (18%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD--------ALRE 903
+DYLLGM WSLT ER +LL++ DK E++ L K + DLW DLD L +
Sbjct: 1211 FDYLLGMPLWSLTQERVEKLLRQIGDKELEIDALIKLSKEDLWKRDLDEFITEWRNQLED 1270
Query: 904 KDKIHPCPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGED-----APPPTKASPV 958
+++ + R + T+ + + R S+ + G+D AP KA+ V
Sbjct: 1271 EER-----RAKKARSYGRRTSTKLKTAGRGPASKKRKAL---GDDDDSDFAPKAKKATVV 1322
Query: 959 KKKKPAA------KRPAPKS--DSSDLSDSDGDSDFASR---KKKTAAAKKAKP 1001
K KP +PA KS ++ L + DF + +KK+ AA KP
Sbjct: 1323 NKVKPKGGLLDYLSKPAAKSKTKATRLDSTSETEDFEAEVIPQKKSRAASSKKP 1376
>gi|378727259|gb|EHY53718.1| DNA topoisomerase II [Exophiala dermatitidis NIH/UT8656]
Length = 1661
Score = 594 bits (1532), Expect = e-166, Method: Compositional matrix adjust.
Identities = 317/676 (46%), Positives = 408/676 (60%), Gaps = 122/676 (18%)
Query: 12 VQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETN 71
+ +G SP+ P K V + YQK +QLEHI+ RPDTYIGSVE + MW+ N E +
Sbjct: 113 IGTDGANDSPQ---PQKKKRVSEQYQKLTQLEHIIKRPDTYIGSVERTEKQMWVYNTEQD 169
Query: 72 HMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVV 131
ME RE++YVPG++KIFDEILVNA DNKQ D M+ I++T+++ ISVWNNG+GIP+
Sbjct: 170 SMEFREVSYVPGIFKIFDEILVNAADNKQNDKTMDEIRVTIDRGKGEISVWNNGRGIPIE 229
Query: 132 EHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRN 191
H EK+++P MIFGHLLT SNY +D E K+TGGRN
Sbjct: 230 IHSKEKIYIPEMIFGHLLTGSNY-------------------------DDNEQKITGGRN 264
Query: 192 GYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPD 250
GYGAKLCNIFS++F VET+ S KK +KQ+W NMS++ +I +K +DFTK+TF PD
Sbjct: 265 GYGAKLCNIFSTEFTVETADSRQKKKYKQIWTKNMSQMGKAKITDTTKGEDFTKVTFHPD 324
Query: 251 LTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DR 305
KF M ++D D+ L RR YD A + K V V LNG ++PV+NF+ Y ++YT +R
Sbjct: 325 FEKFGMDAMDDDLEALFKRRVYDLAGTCKGVAVKLNGSRVPVRNFKKYCEMYTKAIKKER 384
Query: 306 QDEDG-DPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQI 364
+E D +II E+ +PRWE+ A SD FQQVSFVNSIATT GG HV+ + D IV ++
Sbjct: 385 GEEAANDSSEIITESPDPRWEIGFAVSDGSFQQVSFVNSIATTSGGTHVNYIADQIVNRL 444
Query: 365 IEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWI 424
+++VKKKNK GG LKP Q++NHI+I
Sbjct: 445 MDIVKKKNK-----------------------------------GGAVLKPNQIRNHIFI 469
Query: 425 FINCLIVNPTFDSQTKENMTLQKGSFGSTCV----------------------------- 455
F+N LIVNP F SQTKE +T + FGS C
Sbjct: 470 FVNALIVNPAFTSQTKEQLTTKPSQFGSKCQVSEEFMKKVAKTEVINNILHFAQQKADQI 529
Query: 456 --------------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVF 501
PKL DAN AGT+ CTLILTEGDSAK LA++G VVG D +GVF
Sbjct: 530 LKKSDGSRRSRMNNPKLTDANKAGTREGHKCTLILTEGDSAKGLALAGRAVVGPDLFGVF 589
Query: 502 PLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQ 561
PLRGKLLNVR+A+ QI +NAEI N+ LGLQ+ K YT D LRYG LMIMTDQD
Sbjct: 590 PLRGKLLNVRDASIDQISKNAEIQNIKNFLGLQHKKVYT---DTHGLRYGHLMIMTDQDH 646
Query: 562 DGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKA-----REELSFYSLPEFEEW 615
DGSHIKGL+INF+ +P+LL++P FL EFITPI+K + + +FY++PE+E W
Sbjct: 647 DGSHIKGLLINFLQVQFPSLLKIPKFLVEFITPIVKVYRGDPKNPSQSRAFYTMPEYEAW 706
Query: 616 KEETTNWHTYKIKYYK 631
KE + ++ KYYK
Sbjct: 707 KEAHKHERGWEHKYYK 722
Score = 140 bits (353), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 84/113 (74%), Gaps = 1/113 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y PIIPMVLVNGA+GIGTGW + IPN+NP +IV+N+KR + GED PM+PWY+ F
Sbjct: 932 IEPEVYAPIIPMVLVNGADGIGTGWSSYIPNYNPEDIVENLKRRMNGEDWKPMQPWYRGF 991
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KGE+ G RF+ +G I D+++EITEL + WT D+KD L+ ++ AEK
Sbjct: 992 KGEVKAGGPDRFLFSGIIKQTADNEVEITELPIRTWTQDFKDKLEEIIK-AEK 1043
Score = 55.1 bits (131), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 839 GSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDL 898
GS YDYLLGM WSLT ER +LL++ DK E++ L KK+ DLW +DL
Sbjct: 1205 GSVDASA------YDYLLGMPLWSLTQERVEKLLRQIGDKEAEVDALMKKSKEDLWREDL 1258
Query: 899 DALREKDKIHPCPGGNRTRGLALKRQ 924
D + + NR R + R+
Sbjct: 1259 DEFISEWRFQLEDQHNRKRNIRKGRR 1284
>gi|119196923|ref|XP_001249065.1| hypothetical protein CIMG_02836 [Coccidioides immitis RS]
Length = 1635
Score = 594 bits (1531), Expect = e-166, Method: Compositional matrix adjust.
Identities = 313/651 (48%), Positives = 397/651 (60%), Gaps = 119/651 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQ+EHI+ RPDTYIGS+E + MW+ N T+ ME RE++YVPGLYKIFDEILVNA
Sbjct: 54 YQKLSQVEHIIKRPDTYIGSIERTQQNMWVYNSTTDQMEYREVSYVPGLYKIFDEILVNA 113
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQRD M+ IK+T++ E ISVWNNG+GIPV H EK+++P +IFGHLLTSSNY+
Sbjct: 114 ADNKQRDNNMSEIKVTLDMEAGEISVWNNGRGIPVEIHSKEKIYIPELIFGHLLTSSNYD 173
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D E+ KVTGGRNGYGAKLCNIFS++F VET+ S K
Sbjct: 174 D-------------------------EQAKVTGGRNGYGAKLCNIFSTEFTVETADSRSK 208
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K ++Q W+DNMSK+ +I +D+TKITF PD KF M +D D L+ RR YD A
Sbjct: 209 KKYRQTWQDNMSKMRKAKITESKGNDYTKITFKPDFKKFGMEGMDADFEALVKRRVYDLA 268
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDG-DPVKIIYENVNPRWEVAIA 329
+ + V V LNG ++P+ NF+ Y+++YT +R +E D +I+ ++ PRWE+ A
Sbjct: 269 GTCR-VTVRLNGSRIPISNFKKYMEMYTKAIKRERGEEAASDKSEIVTDSTEPRWEIGFA 327
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ + D I ++ + VKKKNK
Sbjct: 328 VSDGSFQQVSFVNSIATTSGGTHVNYISDQICSKLADAVKKKNK---------------- 371
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LKP Q++NHI++F+NCLIVNP F SQTKE +T ++
Sbjct: 372 -------------------TGPLLKPAQIRNHIFLFVNCLIVNPAFTSQTKEQLTTKQSQ 412
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS CV PKL DAN AGT
Sbjct: 413 FGSKCVLSEEFLKKILKTQVMQNIMHFAEQKADQILKKTDGSRRARMNNPKLTDANKAGT 472
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +N EI N
Sbjct: 473 KEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNQEIQN 532
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ LGLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +P+LL++P
Sbjct: 533 IKNFLGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPSLLKIPG 589
Query: 586 FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K SF++LPE+EEWK+ + + KYYK
Sbjct: 590 FLIEFITPIVKVWKGDPKNPTASKSFFTLPEYEEWKKSHGHDRRWDKKYYK 640
Score = 131 bits (330), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 82/113 (72%), Gaps = 2/113 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++PM+L+NGA+GIGTGW T IPN NP +IV N++R++ GE +PMKPW++ F
Sbjct: 850 IEPEVYVPVVPMILINGADGIGTGWSTSIPNFNPEDIVANLRRLMDGESLVPMKPWFRGF 909
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
GE+ GD R+ +G I D ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 910 TGEVTASGD-RYKFSGIIKQTGDCEVEITELPIRTWTQDFKDKLEEIIK-AEK 960
Score = 55.5 bits (132), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 63/150 (42%), Gaps = 33/150 (22%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCP 911
+DYLLGM WSLT ER +LL++ DK E++ L K + DLW DLD + +
Sbjct: 1129 FDYLLGMPLWSLTQERVEKLLRQIGDKELEIDALIKLSKEDLWKRDLDEFITEWRNQ--- 1185
Query: 912 GGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAPPPTKASPVKKKKPAAKRPAPK 971
L+ + R R R + ++G P KK+ A
Sbjct: 1186 ---------LEDEERRAKKARSYGRRTSTKLKTAGR--------GPAGKKRKA------- 1221
Query: 972 SDSSDLSDSDGDSDFASRKKKTAAAKKAKP 1001
L D D DSDFA + KK K KP
Sbjct: 1222 -----LGDDD-DSDFAPKAKKATVVNKVKP 1245
>gi|395326395|gb|EJF58805.1| type II DNA topoisomerase [Dichomitus squalens LYAD-421 SS1]
Length = 1540
Score = 594 bits (1531), Expect = e-166, Method: Compositional matrix adjust.
Identities = 312/665 (46%), Positives = 411/665 (61%), Gaps = 120/665 (18%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K T K S ++Y K SQLEHIL RPD+YIGSVE IT TMW + + M RE+ YVP
Sbjct: 88 KGTNGKKKSASEMYTKLSQLEHILKRPDSYIGSVETITTTMWTWDSDNKRMVYREVKYVP 147
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
G +KI DEILVNA DNK DP M+ IK+T++ E NTISV+NNG+GIP+ H EK+++P
Sbjct: 148 GFFKIVDEILVNAADNKINDPSMDTIKVTIDIENNTISVYNNGRGIPIEMHSKEKIYIPE 207
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IFGHLL+SSNY +D+E K+TGGRNGYGAKL NI+S
Sbjct: 208 LIFGHLLSSSNY-------------------------DDDEKKLTGGRNGYGAKLANIYS 242
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDK 261
++F VET+ + + Q W +NMSK+ +I K+G +++T++TF PDL +F M S+D+
Sbjct: 243 TEFTVETADKNTSQKYVQTWTENMSKMGKAKITKNGRGEEYTRVTFKPDLKRFGMESIDE 302
Query: 262 DMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY--------TDRQDEDGDPV 313
D V L+ +R +D A + KDVKVFLN E+L +KNF+ YV+L+ ++ D P
Sbjct: 303 DTVSLLKKRVHDLAGTVKDVKVFLNDERLKIKNFKQYVELFLNSAAEAAANKTDGAAQPK 362
Query: 314 -KIIYEN-VNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK 371
++YE RWEVA A SD QQVSF NSI+T KGG HV+ + D I K +I + KK
Sbjct: 363 PTVVYEAPAGGRWEVAFAVSDGTPQQVSFANSISTFKGGTHVNYIADQIAKHLITSIAKK 422
Query: 372 NKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIV 431
NK +KP Q+K+H+WIF+N L+
Sbjct: 423 NK------------------------------------AATVKPAQIKSHMWIFVNALVE 446
Query: 432 NPTFDSQTKENMTLQKGSFGS--------------------------------------- 452
NPTFDSQTKE +TL FGS
Sbjct: 447 NPTFDSQTKETLTLPASKFGSKPTLSEDFMKKVAKSSIVDHVLNWAKFKADQQLKKTDGN 506
Query: 453 -----TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKL 507
T + KL DAN+AGTK + +CTLILTEGDSAK+LA++GLGVVGRD YGVFPLRGKL
Sbjct: 507 RRSRITGMTKLCDANNAGTKKAGECTLILTEGDSAKALAIAGLGVVGRDSYGVFPLRGKL 566
Query: 508 LNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIK 567
LNVR+A H QI++N EI N+ KILGLQ++K YT D LRYGRLM+MTDQD DGSHIK
Sbjct: 567 LNVRDAKHDQIMKNEEIQNIKKILGLQHNKTYT---DTAGLRYGRLMLMTDQDHDGSHIK 623
Query: 568 GLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYK 626
GL+IN++ H +P+LL+LP FL EFITP+++ K ++ ++FY++PE+E W E+T + H ++
Sbjct: 624 GLLINYLDHFYPSLLKLPKFLVEFITPVVRVWKGKQVINFYTIPEYEMWLEQTPDSHKWQ 683
Query: 627 IKYYK 631
KYYK
Sbjct: 684 HKYYK 688
Score = 134 bits (336), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 79/109 (72%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
++EPEWY+PI+PMVLVNGAEGIGTGW T IP +NP +IV NI+R++ E+ PM PW++
Sbjct: 897 QVEPEWYMPIVPMVLVNGAEGIGTGWSTTIPAYNPEDIVANIRRLMNNEEQEPMLPWWRG 956
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
F G + GD+++ V G LDD +EITEL + +WT ++K L+ ++
Sbjct: 957 FSGTVKKVGDNKYDVIGTCTKLDDTTVEITELPIHRWTQNFKAELEAMI 1005
Score = 45.1 bits (105), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
D+DYLLGM WSLT E+ +L ++ ++K EL L + P +W DLDA
Sbjct: 1178 DFDYLLGMAIWSLTKEKIEKLRQQANEKEQELLELLARTPNQIWQTDLDAF 1228
>gi|384250310|gb|EIE23790.1| DNA topoisomerase II [Coccomyxa subellipsoidea C-169]
Length = 1189
Score = 593 bits (1530), Expect = e-166, Method: Compositional matrix adjust.
Identities = 321/662 (48%), Positives = 414/662 (62%), Gaps = 126/662 (19%)
Query: 19 PSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREI 78
PS + P S+E++YQKKSQLEHILLRPDTYIGS E + +W+ + E + +EI
Sbjct: 16 PSTSQNVPGK--SIEEVYQKKSQLEHILLRPDTYIGSTEAQQQKLWVHDGE--QLALKEI 71
Query: 79 TYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKM 138
+VPGLYKIFDEILVNA DNK RDPKM+ +++ ++ NTI VWNNG G+PV HK+EK+
Sbjct: 72 EFVPGLYKIFDEILVNAADNKVRDPKMDALRVDIDPAENTIRVWNNGDGVPVEVHKEEKV 131
Query: 139 FVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLC 198
+VP +IFGHLLTSSNY+D +E KVTGGRNGYGAKL
Sbjct: 132 YVPELIFGHLLTSSNYDD-------------------------DEKKVTGGRNGYGAKLA 166
Query: 199 NIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSG-SKDDFTKITFTPDLTKFKMT 257
NIFS++FV+ET + ++ ++QV++DNM P IK+ + D++T +TF PDL KF M+
Sbjct: 167 NIFSTEFVIETCDGKRQRQYRQVFRDNMGVKQEPVIKACKASDNWTCVTFKPDLAKFGMS 226
Query: 258 SLDKDMVDLITRRAYD-AAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKII 316
L++ V L+ +R YD A K VKV+LNG+ LP+K+FQDYV LY +D D + +
Sbjct: 227 VLEEQTVSLMRKRVYDLAGVLGKGVKVYLNGKLLPIKSFQDYVGLYL----KDKDTAR-V 281
Query: 317 YENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLG 376
YE VN RWE+ I S+ FQQVSFVNSI T KGG HV+ VVD I K I + K NK
Sbjct: 282 YEKVNDRWEICICASEGQFQQVSFVNSICTVKGGTHVNHVVDQITKAICD---KMNK--- 335
Query: 377 CTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFD 436
G K N +KPF VKN++ +F+NC+I NP FD
Sbjct: 336 -------GKKAN------------------------VKPFMVKNYLSVFVNCMIENPAFD 364
Query: 437 SQTKENMTLQKGSFGSTC------------------------------------------ 454
SQTKE +TL+ SFGS C
Sbjct: 365 SQTKETLTLRASSFGSKCDVSDLKFLKKLEACGITDLVNAFATFKNEKELKKTDGAKRSR 424
Query: 455 ---VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVR 511
+ KL+DANDAG +NS CTLILTEGDSAKSL ++G+ V GRD++GVFPLRGKLLNVR
Sbjct: 425 ITGLTKLDDANDAGGRNSEQCTLILTEGDSAKSLVIAGMSVAGRDQFGVFPLRGKLLNVR 484
Query: 512 EATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLII 571
+A QI NAEIN + +ILGLQ+ K Y + K LRYG LMIMTDQD DGSHIKGLI+
Sbjct: 485 DAAVTQINGNAEINAIKQILGLQHGKSYDST---KQLRYGHLMIMTDQDHDGSHIKGLIM 541
Query: 572 NFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETT-NWHTYKIKY 629
NF+HH +P+LL++ FL EFITPI+K +K +++LSF+++PE+E WK+ + W IKY
Sbjct: 542 NFLHHFYPSLLKVKGFLLEFITPIVKVSKGKQKLSFFTMPEYEAWKKSASPGW---TIKY 598
Query: 630 YK 631
YK
Sbjct: 599 YK 600
Score = 140 bits (353), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/117 (54%), Positives = 83/117 (70%), Gaps = 4/117 (3%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY+PI+PMVLVNGAEGIGTGW T IPN+NPR+IV N++R++ GE+ + M+PWY F
Sbjct: 810 IEPHWYLPILPMVLVNGAEGIGTGWSTYIPNYNPRDIVANLRRLLAGEEVVAMQPWYNGF 869
Query: 720 KGEIDYC----GDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KG I + V+G +A +D+ LEITEL V KWT DYK+ L+ L+ EK
Sbjct: 870 KGTIQEIPSKTAGKSYNVHGTVAQVDESTLEITELPVRKWTQDYKEFLEGLIKPEEK 926
>gi|449550442|gb|EMD41406.1| hypothetical protein CERSUDRAFT_109994 [Ceriporiopsis subvermispora
B]
Length = 1522
Score = 593 bits (1530), Expect = e-166, Method: Compositional matrix adjust.
Identities = 311/685 (45%), Positives = 415/685 (60%), Gaps = 122/685 (17%)
Query: 5 ESDFDPDVQQNGNGPSP---KKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITE 61
+SD D DV ++ +P T K S + Y K SQLEHIL RPD+YIGSVE IT+
Sbjct: 65 DSDSDVDVNEDAGTSAPTVAATATNGKKKSASETYTKLSQLEHILKRPDSYIGSVETITQ 124
Query: 62 TMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISV 121
MW+ + E M +EI+YVPG +KI DEILVNA DNK DP M+ IK+T++ E N ISV
Sbjct: 125 PMWVWDSELKRMAHKEISYVPGFFKIVDEILVNAADNKINDPTMDTIKVTIDAEKNLISV 184
Query: 122 WNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYND 181
+N+G+GIP+ H EKM++P +IFGHLL+SSNY +D
Sbjct: 185 YNSGRGIPIEMHSKEKMYIPELIFGHLLSSSNY-------------------------DD 219
Query: 182 EEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKD 240
+E K+TGGRNG+GAKL NI+S++F VET+ + + Q W DNMSK+ +I K+ +
Sbjct: 220 DEKKLTGGRNGFGAKLANIYSTEFTVETADKNSSQKYSQTWTDNMSKMGKAKITKNARNE 279
Query: 241 DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVK 300
++T++TF PDL +F M S+D D V L+ +R +D A + KD+KVFLN E+L +KNF+ YV+
Sbjct: 280 EYTRVTFKPDLKRFGMDSIDDDTVALLKKRVHDLAGTVKDIKVFLNDERLKIKNFKQYVE 339
Query: 301 LYTDRQDEDGDPVK---------IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGR 351
LY E + +IYE + RWEVA A S+ FQQVSF NSI+T KGG
Sbjct: 340 LYLSSAAEQATDISGGAAQPKPTMIYEQIGKRWEVAFAVSEGTFQQVSFANSISTVKGGT 399
Query: 352 HVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGM 411
HV + D I K +I I +
Sbjct: 400 HVTLITDQIAKNLIAA------------------------------------ISKKNKAA 423
Query: 412 ALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS------------------- 452
A+K Q+KNH+WIF+N LI NPTFDSQTKE +TL FG+
Sbjct: 424 AVKAGQIKNHMWIFVNALIENPTFDSQTKETLTLPTSKFGTKPVLSEDFMKKVQKSAIIE 483
Query: 453 -------------------------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAV 487
T +PKL DAN+AG+K + +CTLILTEGDSAKSLAV
Sbjct: 484 HILNWAKFKADQQMKKTDGSRRTRLTGLPKLSDANNAGSKKASECTLILTEGDSAKSLAV 543
Query: 488 SGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKT 547
+GLGVVGRD +GVFPLRGKLLNVR+A H QI++N EI N+ KILGLQ++K Y +D
Sbjct: 544 AGLGVVGRDNFGVFPLRGKLLNVRDAKHDQIMKNEEIQNIKKILGLQHNKDY---KDAGQ 600
Query: 548 LRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSF 606
LRYG+LMIM DQD DGSHIKGL++N++ H +P+LL++P F EFITPI++ +K +++ F
Sbjct: 601 LRYGKLMIMADQDHDGSHIKGLLLNYLDHFYPSLLKIPGFFLEFITPIVRVSKGDKKVDF 660
Query: 607 YSLPEFEEWKEETTNWHTYKIKYYK 631
+++PE+++W E T N HT+K+KYYK
Sbjct: 661 FTVPEYQQWVENTPNSHTWKVKYYK 685
Score = 133 bits (334), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 81/107 (75%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP++Y+P++PM+L+NGAEGIGTGW T +P++NP +IV NI+R++ GE+ +PM PW++ F
Sbjct: 895 VEPDYYLPVLPMILINGAEGIGTGWSTSVPSYNPEDIVANIRRLMAGEEQVPMLPWWRGF 954
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
KG I G+ ++ V G + LDD +EITEL + KWT +YK L+ +
Sbjct: 955 KGTIKKVGEHKYDVLGVVNKLDDTTVEITELPIHKWTQNYKAELEAM 1001
Score = 47.0 bits (110), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 61/128 (47%), Gaps = 9/128 (7%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE--KDKIH 908
DYDYLLGM +SLT E+ ++L+++ DK TEL L + P +W DLD E +D
Sbjct: 1171 DYDYLLGMAIYSLTKEKIDKLVQQAKDKETELLALLELTPIQIWQKDLDVFLEEWRDNCD 1230
Query: 909 PCPGGNRTRGLALKRQTRYQPSNRVLTSR------DEPMVVSSGEDAPPPTKASPVK-KK 961
T + K+ R Q + + L S+ D+ + A P K S K K
Sbjct: 1231 RWENKLVTAEASSKKGKRKQATLQQLVSKKKTNEDDDDFDFKPIKAAAKPRKVSDSKTAK 1290
Query: 962 KPAAKRPA 969
KP A P+
Sbjct: 1291 KPIAVVPS 1298
>gi|393219003|gb|EJD04491.1| DNA topoisomerase II [Fomitiporia mediterranea MF3/22]
Length = 1509
Score = 593 bits (1530), Expect = e-166, Method: Compositional matrix adjust.
Identities = 305/690 (44%), Positives = 417/690 (60%), Gaps = 130/690 (18%)
Query: 8 FDPDVQQNGNG----PSPKK-------KTPANKMSVEKIYQKKSQLEHILLRPDTYIGSV 56
D D + NG+G P P + P + + + Y+K + EH++ RPD+YIGSV
Sbjct: 1 MDVDDRANGSGDESRPGPSTLDDPAFTRAPMDGKTASEHYKKLTPREHVIARPDSYIGSV 60
Query: 57 EPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQET 116
E IT++MW+ + + M RE++YVPG KI DEI+VNA DNK DP M+ IK+ +N +
Sbjct: 61 ETITQSMWVYDSDAKRMVFREVSYVPGFLKIVDEIIVNAADNKINDPNMDTIKVNINAKE 120
Query: 117 NTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTS 176
TISV+NNG+GIP+ H+ EK+ +P MIFGHLLTS NY+D T+
Sbjct: 121 GTISVYNNGRGIPIEMHEKEKIMIPEMIFGHLLTSGNYDD----------TI-------- 162
Query: 177 SNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKS 236
K+TGGRNGYGAKL NI+S++F +ET+ + +KQ W NMS +I
Sbjct: 163 -------KKLTGGRNGYGAKLANIYSTEFTLETADKNTAQKYKQTWTKNMSVCGKAKITK 215
Query: 237 GSK-DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNF 295
SK ++FT+++FTPD +FKM +D D + L+ +R YD A + KD+KV+LN E+L +KNF
Sbjct: 216 NSKGEEFTRVSFTPDFERFKMRGMDADALALLKKRVYDLAGTVKDIKVYLNDERLKIKNF 275
Query: 296 QDYVKLYTDRQDEDGDPVK---------IIYENVNPRWEVAIAPSDRGFQQVSFVNSIAT 346
+ YV++Y + +IYE + PRWE+A A SD FQQVSF NSIAT
Sbjct: 276 KQYVEMYLSSAAAEAAGASGGAAQAKPSVIYEQLGPRWEIAFAVSDGSFQQVSFANSIAT 335
Query: 347 TKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGV 406
TKGG HV+ + + I K +I +++KNK
Sbjct: 336 TKGGTHVEYIANQITKHLISTIQRKNK--------------------------------- 362
Query: 407 RLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGST------------- 453
G +KP Q+KNH+WIF+N LI NP+FDSQTKE +T G FG+
Sbjct: 363 ---GATVKPAQIKNHMWIFVNALIENPSFDSQTKETLTKTAGGFGTKPTISEDFMKKVMK 419
Query: 454 -------------------------------CVPKLEDANDAGTKNSIDCTLILTEGDSA 482
+ KL DAN+AGT+ + CTLILTEGDSA
Sbjct: 420 TSLVENVLNWAKFKADQQIKKTDGAKRSRLLGITKLADANNAGTREASKCTLILTEGDSA 479
Query: 483 KSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTV 542
K+LAV+GLGVVGR+ +GVFPLRGK+LNVREA H QI++N EI N+ KILGLQ++K+Y
Sbjct: 480 KALAVAGLGVVGRNNFGVFPLRGKMLNVREAKHDQIMKNEEIQNVKKILGLQHNKEY--- 536
Query: 543 EDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAR 601
+D+ +LRYGRLMIMTDQD DGSHIKGL+INF+ H +P+LL++P FL EF+TPI++ TK +
Sbjct: 537 KDIASLRYGRLMIMTDQDHDGSHIKGLLINFLDHFYPSLLKVPEFLVEFVTPIVRVTKGK 596
Query: 602 EELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+ + F++LPEFE+W+ ET + H + KYYK
Sbjct: 597 QRIDFFTLPEFEKWQAETPDSHKWSSKYYK 626
Score = 139 bits (350), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 89/129 (68%), Gaps = 4/129 (3%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE+Y+PI+P+VLVNGAEGIGTGW T +P++NP +IVDN+KR+++GE+ +PM PW++ F
Sbjct: 836 IEPEFYVPILPLVLVNGAEGIGTGWSTTVPSYNPVDIVDNLKRLMKGEELVPMNPWWRGF 895
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL----HGAEKDEV 775
G I GD++F V G + L+D +EITEL + KWT +K L+++ GA KD
Sbjct: 896 NGTIKKTGDNKFEVTGVVKKLNDTTVEITELPIHKWTQAFKAELESMCGEKGDGAVKDYK 955
Query: 776 HPGPGRKSH 784
R H
Sbjct: 956 EHHDNRNVH 964
Score = 51.6 bits (122), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 828 RQAAEGEDDEAGSQTQEEED---PDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNI 884
+ A GE ++A T+ EE D+DYLLGM ++LT E+ +LL++ K TEL
Sbjct: 1087 KAKAAGETEDALEDTEAEEQETGTTTDFDYLLGMPIYNLTHEKIEKLLEQARQKETELMT 1146
Query: 885 LKKKAPTDLWSDDLD---ALREK 904
L + P+ +W+ DLD AL EK
Sbjct: 1147 LLELTPSQIWNTDLDNFLALWEK 1169
>gi|393247852|gb|EJD55359.1| type II DNA topoisomerase [Auricularia delicata TFB-10046 SS5]
Length = 1538
Score = 592 bits (1527), Expect = e-166, Method: Compositional matrix adjust.
Identities = 314/687 (45%), Positives = 406/687 (59%), Gaps = 120/687 (17%)
Query: 1 MSSDESDFDPDVQQNGNGPSP-KKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPI 59
+S+D+ DF + P + P + + YQK + +EHIL RPD+YIGSVE I
Sbjct: 71 LSADDMDFGVSDDDDDAPAKPVEAAAPRKDKTASETYQKFTPIEHILKRPDSYIGSVERI 130
Query: 60 TETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTI 119
+TMW + +T M R ++YVPG YKI DEILVNA DNK DP M+ +KI ++ E NTI
Sbjct: 131 KQTMWTFDSDTKRMVHRAVSYVPGFYKIVDEILVNAADNKINDPNMDTLKINIDPENNTI 190
Query: 120 SVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNY 179
SVWNNG GIP+ H EKM++P MIFG+LLTSSNY
Sbjct: 191 SVWNNGHGIPIEIHSTEKMYIPEMIFGNLLTSSNY------------------------- 225
Query: 180 NDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGS 238
+D E K+TGGRNGYGAKL NI+S +F VET+ + + +KQ WKDNMS P+I K+G
Sbjct: 226 DDNEKKLTGGRNGYGAKLTNIYSHRFTVETADKKTAQKYKQTWKDNMSVCEKPKITKNGK 285
Query: 239 KDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDY 298
K++FT ++F PDL +F M SLD D+V L+ +R YD A + KD+KV+LN E+L +KNF+ Y
Sbjct: 286 KEEFTCVSFEPDLARFGMDSLDDDIVSLLKKRVYDMAGTVKDIKVYLNDERLKIKNFKQY 345
Query: 299 VKLYTDRQDEDGDPVK---------IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKG 349
V++Y + +YE N RWEVA A SD Q VSF NSIATTKG
Sbjct: 346 VEMYLESAAAAASEESGGAAQTKPAFVYEQPNERWEVAFAVSDGTPQHVSFANSIATTKG 405
Query: 350 GRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLG 409
G HV V D I K+++ V+KKNK
Sbjct: 406 GTHVAYVADQIAKKLVAAVEKKNK------------------------------------ 429
Query: 410 GMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS----------------- 452
G +K Q+KNH+WIF+N LI NPTFDSQTKE +TL FG+
Sbjct: 430 GATVKASQMKNHMWIFVNALIENPTFDSQTKEQLTLPASKFGTRPSLSDDFMKKIAKSSL 489
Query: 453 ---------------------------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSL 485
T + KL DAN AG + DCTLILTEGDSAK L
Sbjct: 490 IENVLSWAKFKADKDAKKTDGTKRTRLTGMVKLTDANRAGGRYGKDCTLILTEGDSAKGL 549
Query: 486 AVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDM 545
A++GL VVG D +GVFPLRGK+LNVREA H QI++N EI + KI+GLQ++K+YT+VE
Sbjct: 550 ALAGLDVVGHDNFGVFPLRGKMLNVREAKHDQIMKNEEIQAIKKIIGLQHNKQYTSVE-- 607
Query: 546 KTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREEL 604
+LRYG+LMIM DQD DGSHIKGL+INF+ H +P+LL+LP FL EF+TPI++ K
Sbjct: 608 -SLRYGKLMIMADQDHDGSHIKGLLINFLDHFYPSLLKLPEFLVEFVTPIVRVIKGNRHH 666
Query: 605 SFYSLPEFEEWKEETTNWHTYKIKYYK 631
+F++L EF W+E T + H + +KYYK
Sbjct: 667 NFFTLYEFRAWQEATADSHRWTVKYYK 693
Score = 114 bits (286), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 79/115 (68%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+P++P+VL+NGAEGIGTGW T IP +NP +IV NI+ ++RGE+ PM PW++ +
Sbjct: 903 VEPEWYVPVVPVVLLNGAEGIGTGWSTSIPCYNPVDIVTNIRHLMRGEEMDPMMPWWRGY 962
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
KG I D +F V G + +EITEL VGKWT YK L+ ++ ++ E
Sbjct: 963 KGTIRKIADQKFEVTGIVTKTSATTVEITELAVGKWTQAYKAELEAMMENEKESE 1017
Score = 59.3 bits (142), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 74/163 (45%), Gaps = 16/163 (9%)
Query: 838 AGSQTQEEEDPDK---------DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKK 888
AG +DPD+ DYDYLLGM WSLT E+ +L ++ K EL L K
Sbjct: 1160 AGETAPTVDDPDEEEDVGSGMGDYDYLLGMAIWSLTKEKIEKLRQQALGKEEELKELLSK 1219
Query: 889 APTDLWSDDLDA-LREKDKIHPCPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGE 947
P +W DLD L E DKI R A K+ + + R+ + + S E
Sbjct: 1220 TPAQMWDHDLDQFLLEWDKIRDSWTAEE-RKAAAKKGKQGKLKTRLSIGKPKKGAGSDSE 1278
Query: 948 DAPPPTKASPVKKKKPAAKRPAPKSDSSDLSDS----DGDSDF 986
D PTKA+ +K +P A+ + S + + D +SDF
Sbjct: 1279 DDFRPTKAT-ARKAEPKARVTSASSSKATVKKVTALLDDESDF 1320
>gi|70568834|dbj|BAE06274.1| topoisomerase II [Scutellaria baicalensis]
Length = 1469
Score = 591 bits (1523), Expect = e-165, Method: Compositional matrix adjust.
Identities = 325/671 (48%), Positives = 411/671 (61%), Gaps = 120/671 (17%)
Query: 15 NGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHME 74
N N P P +K ++E+ YQKK+QLEHILLRPDTYIGS+E T+T+W+ E M
Sbjct: 14 NANIPPPDAAGGGSKKTIEQAYQKKTQLEHILLRPDTYIGSIERHTQTLWVY--ENEQMV 71
Query: 75 RREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHK 134
++ ITYVPGLYKIFDEILVNA DNKQRDPKMN +K+T++ E+N ISV+NNG G+PV H+
Sbjct: 72 QKSITYVPGLYKIFDEILVNAADNKQRDPKMNSVKVTIDVESNCISVYNNGDGVPVEIHQ 131
Query: 135 DEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYG 194
+E ++VP +IF GHLLTSSNY+D E K TGGRNGYG
Sbjct: 132 EEGVYVPELIF-------------------------GHLLTSSNYDDNEKKTTGGRNGYG 166
Query: 195 AKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTK 253
AKL NIFS++FV+ET+ + +K +KQV+ +NM + P I K + DD+TKITF PDL K
Sbjct: 167 AKLTNIFSTEFVIETADGKREKKYKQVFSNNMGTKSEPIISKRQAGDDWTKITFKPDLAK 226
Query: 254 FKMTSLDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDG-D 311
F MT L+ D V L+ +R D A K VKV LNG+K K+F Y LY D
Sbjct: 227 FNMTCLEDDTVALMKKRVIDIAGCLGKTVKVELNGQKFHFKSFSSYCDLYMKSTSVSSLD 286
Query: 312 PVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK 371
P+ E V+ RW++ ++ S+ FQQVSFVN IAT KGG HVD V + I ++ V+K K
Sbjct: 287 PLPRFEEEVHERWQIFVSRSEGQFQQVSFVNGIATIKGGTHVDYVTNKITSHLVNVIKNK 346
Query: 372 NKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIV 431
NK + LKP VKNH+W+F+N LI
Sbjct: 347 NK---------------------------------KNKKFDLKPHTVKNHLWVFVNALID 373
Query: 432 NPTFDSQTKENMTLQKGSFGSTC------------------------------------- 454
NP FDSQTKE +TL+ SFGS+
Sbjct: 374 NPAFDSQTKETLTLRAASFGSSWDFSSNFLDRVAKSDIMKNIEEWAEFKQKKDLKKTDGS 433
Query: 455 -------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKL 507
+ KL DAN+AG +NS CTLILTEGDSAK+LA++GL VVGRD YGVFPLRGKL
Sbjct: 434 KDRRIYGLAKLSDANEAGGRNSDKCTLILTEGDSAKALAIAGLSVVGRDHYGVFPLRGKL 493
Query: 508 LNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIK 567
LNVREA+H Q++ N EI ++ +ILGLQ+ K+Y E +K LRYG LMIMTDQD DGSHIK
Sbjct: 494 LNVREASHNQLMHNLEIQHIKQILGLQHGKQY---ESVKPLRYGHLMIMTDQDHDGSHIK 550
Query: 568 GLIINFIHHNWPTLLRLP-FLEEFITPIIKA--TKAREELSFYSLPEFEEWKE----ETT 620
GL+INFIH WP+LL++P FL FITPI+KA + +LSFY++P++E WKE E
Sbjct: 551 GLLINFIHSFWPSLLKIPSFLLGFITPIVKARHKDGKRKLSFYTMPQYEAWKEAQGTEAK 610
Query: 621 NWHTYKIKYYK 631
NW +KYYK
Sbjct: 611 NW---TVKYYK 618
Score = 121 bits (303), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 79/119 (66%), Gaps = 6/119 (5%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY+PIIPMVLVNG+EGIGTGW + +PN+NP +I+ NI+ ++ E PM PWYK F
Sbjct: 828 IEPTWYVPIIPMVLVNGSEGIGTGWSSYVPNYNPVDIIANIRHLLNDEATEPMHPWYKGF 887
Query: 720 KGEIDYC----GDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
G ++ + + V+G I +DD L I EL + +WT DYK+ L+++ AE D+
Sbjct: 888 LGSVEKTATKEAGASYTVSGIIEEVDDTTLCIKELPIRRWTQDYKEFLESV--SAENDK 944
Score = 52.0 bits (123), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 825 RQERQAAEGEDDEAGSQTQEEED-------PDKDYDYLLGMTFWSLTMERKNELLKKRDD 877
R E A DD G +T+E + DYDYLL + +LT E+ EL +RD
Sbjct: 1087 RAEVAIAGATDD--GEETEENSEVPIAPGVSSSDYDYLLSLAIGTLTTEKMQELRAERDK 1144
Query: 878 KMTELNILKKKAPTDLWSDDLDALREK 904
M E+ LK+ LW+ DLDAL +K
Sbjct: 1145 LMQEVEELKQSTARSLWNKDLDALEDK 1171
>gi|115390190|ref|XP_001212600.1| DNA topoisomerase 2 [Aspergillus terreus NIH2624]
gi|114194996|gb|EAU36696.1| DNA topoisomerase 2 [Aspergillus terreus NIH2624]
Length = 1732
Score = 591 bits (1523), Expect = e-165, Method: Compositional matrix adjust.
Identities = 310/656 (47%), Positives = 401/656 (61%), Gaps = 119/656 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+V + YQK +QLEHI+ RPDTY+GS E T+ MW+ + E+ ME RE++YVPGLYKIFDE
Sbjct: 129 NVSEKYQKLTQLEHIIKRPDTYVGSTERTTQHMWVYSSESEGMEYREVSYVPGLYKIFDE 188
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
I+VNA DNKQ D M+ I++T+++E+ ISVWNNG+GIP+ H EKM+VP +IF
Sbjct: 189 IVVNAADNKQNDKNMDEIRVTIDRESGEISVWNNGRGIPIEMHSKEKMYVPELIF----- 243
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
GHLLTSSNY+D + KVTGGRNG+GAKLCN+FS++F +ET
Sbjct: 244 --------------------GHLLTSSNYDDTQMKVTGGRNGFGAKLCNVFSTEFTIETQ 283
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
S KK +KQ W +NM+K+ +I D+TK+TF PD KF MT +D D L+ RR
Sbjct: 284 DSRQKKKYKQTWTENMTKMGKAKITDAKGADYTKVTFKPDYAKFGMTGMDDDFEALVKRR 343
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD---RQDEDGDPV---KIIYENVNPRW 324
YD A + K V V LNG ++P++NF+ Y+++YT R+ D P +II + +PRW
Sbjct: 344 VYDLAGTAK-VAVKLNGSRIPIRNFKMYMEMYTKAIRRERGDMGPAGKNEIITCSPDPRW 402
Query: 325 EVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFG 384
EV A SD FQQVSFVNSIATT GG HV+ + D I ++ E VKKKNK+
Sbjct: 403 EVGFAVSDGAFQQVSFVNSIATTSGGTHVNYIADQICGKLAEQVKKKNKN---------- 452
Query: 385 NKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT 444
G LKP Q++NHI+IF+N LIVNP F SQTKE +T
Sbjct: 453 -------------------------GATLKPAQIRNHIFIFVNALIVNPAFTSQTKEQLT 487
Query: 445 LQKGSFGSTCV-------------------------------------------PKLEDA 461
++ FGS CV PKL DA
Sbjct: 488 TKQSQFGSKCVLEEDFYKKILKTEVMTNILHFAQQKADQMLKKTDGGRRSRMNNPKLTDA 547
Query: 462 NDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILEN 521
N AGTK CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +N
Sbjct: 548 NKAGTKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASFDQIAKN 607
Query: 522 AEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTL 581
EI N+ +GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+INF+ +P+L
Sbjct: 608 QEIQNIKNFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINFLQAQFPSL 664
Query: 582 LRLP-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
L++P FL EFITPI+K K ++ SF+++PE+E WKEE + ++ KYYK
Sbjct: 665 LKIPEFLIEFITPIVKVWKGDPKNPTKQRSFFTMPEYEAWKEEHGHERGWEHKYYK 720
Score = 136 bits (342), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 83/115 (72%), Gaps = 1/115 (0%)
Query: 658 GRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYK 717
+IEPE Y+P++PM+L+NGA+GIGTGW + IPN+NP +IV+N+KRM+ GE PM+PW++
Sbjct: 928 AKIEPEVYVPVVPMILINGADGIGTGWSSSIPNYNPEDIVENLKRMMDGEPLKPMQPWFR 987
Query: 718 NFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F GE+ G RF +G I D ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 988 GFTGEVTAVGQDRFKFSGIIKETGDKEVEITELPIRTWTQDFKDKLEDIIK-AEK 1041
Score = 49.7 bits (117), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
YDYLLGM WSLT ER +L ++ DK E++ L K + D+W DL+
Sbjct: 1211 YDYLLGMPIWSLTQERVEKLRRQIGDKELEIDTLIKLSKEDIWKRDLE 1258
>gi|294950051|ref|XP_002786436.1| DNA topoisomerase 2-alpha, putative [Perkinsus marinus ATCC 50983]
gi|239900728|gb|EER18232.1| DNA topoisomerase 2-alpha, putative [Perkinsus marinus ATCC 50983]
Length = 1579
Score = 590 bits (1522), Expect = e-165, Method: Compositional matrix adjust.
Identities = 315/669 (47%), Positives = 407/669 (60%), Gaps = 131/669 (19%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
SVE+IY+K +Q+EHIL RPDTY+GS+E TE MW+ ET H+ +++IT+ PGLYKIFDE
Sbjct: 14 SVEQIYKKMTQIEHILARPDTYVGSLEHQTERMWVWESETGHIVQKQITFCPGLYKIFDE 73
Query: 91 ILVNACDNKQRDPK-MNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
ILVNA DN QRDPK MN IK+ ++ E I V+NNGKG+P+ HK+ ++VP ++F
Sbjct: 74 ILVNAADNLQRDPKHMNTIKVDIDAENGFIKVYNNGKGLPIQIHKEHHVYVPELVF---- 129
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
GHLLTS NY+D+E KVTGGRNGYGAKL NIFS KF++ T
Sbjct: 130 ---------------------GHLLTSDNYDDKEKKVTGGRNGYGAKLSNIFSKKFLITT 168
Query: 210 SCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
+ KK +KQ ++ +M K P I K+DFT + F PDL KF MT LD D+V L+++
Sbjct: 169 ADRTRKKLYKQQFEKSMQKKKEPVITDYDKEDFTCVQFWPDLEKFGMTHLDADIVSLMSK 228
Query: 270 RAYDAA--ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPV--KIIYENV----- 320
R D A +++K KV+LNG+++P+ +F+DY +LY + D + K+ NV
Sbjct: 229 RVIDVAGTSASKKCKVYLNGKRVPISSFKDYAELYLTGEWVDAPKIYEKVARANVYVSCG 288
Query: 321 ----NPRWEVAIAPSDRG-----FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK 371
+ RWEV + SD FQQVSF NSI T KGG HV+ V + IV +++ + K
Sbjct: 289 HVQVSDRWEVLVTLSDPAGGGGQFQQVSFANSINTVKGGTHVNHVAEQIVNAVLKKAQTK 348
Query: 372 NKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIV 431
NK GGM LKPFQVKNH+W+F+N LI
Sbjct: 349 NK-----------------------------------GGMELKPFQVKNHMWLFVNALIE 373
Query: 432 NPTFDSQTKENMTLQKGSFGSTCV------------------------------------ 455
NPTFDSQTKE +TL+ FGS CV
Sbjct: 374 NPTFDSQTKETLTLKVAKFGSKCVLSEGTMKKVLSSGIVDQVVNWAKFKQTATLQSKIKV 433
Query: 456 ------------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPL 503
PKLEDANDAG + S CTLILTEGDSAK+LAV+GLGV+GRDKYGVFPL
Sbjct: 434 GGTGGQTRIFGVPKLEDANDAGGRYSDRCTLILTEGDSAKALAVAGLGVIGRDKYGVFPL 493
Query: 504 RGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDG 563
RGK+LNVREA++KQ ++N EI ++KI+GL+ K Y V K LRYG +M+MTDQD DG
Sbjct: 494 RGKVLNVREASYKQTVDNKEIQAILKIIGLEPRKAYDGV---KGLRYGSIMVMTDQDLDG 550
Query: 564 SHIKGLIINFIHHNWPTLLRL-PFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNW 622
SHIKGL+IN +HH WP LL+ F++EF+TPI+K K R ELSF++L E+EEWK +
Sbjct: 551 SHIKGLLINLVHHWWPGLLQTRGFMKEFVTPIVKCVKGRRELSFFTLTEYEEWKRNNNDG 610
Query: 623 HTYKIKYYK 631
+KIKYYK
Sbjct: 611 KGWKIKYYK 619
Score = 115 bits (289), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 77/109 (70%), Gaps = 2/109 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP+WY PIIPMVLVNGAEGIGTGW T + +++PREI+ ++ +IRG + + PWY+ F
Sbjct: 829 IEPKWYCPIIPMVLVNGAEGIGTGWSTNVLSYDPREIIHLLRALIRGVELHDIHPWYRGF 888
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDK-LEITELQVGKWTTDYKDTLDTLL 767
G ++ + + G++ + DD+ ++ITEL V WT +YKD LDTL+
Sbjct: 889 TGSVERNDKNGYDFVGKVRMASDDRTVDITELPVKTWTQNYKD-LDTLV 936
Score = 47.4 bits (111), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
YDYLL M+ WSLT+ER + + DK EL +L+ ++ ++W DL L
Sbjct: 1129 YDYLLAMSMWSLTLERVEAMERLLHDKEGELKVLRGRSIEEMWDRDLVQL 1178
>gi|145353138|ref|XP_001420882.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581118|gb|ABO99175.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1292
Score = 590 bits (1521), Expect = e-165, Method: Compositional matrix adjust.
Identities = 322/657 (49%), Positives = 408/657 (62%), Gaps = 117/657 (17%)
Query: 24 KTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPG 83
KT NK SVE+IYQKK+QLEHILLRPDTY+GS E E W+ + T + +++++VPG
Sbjct: 21 KTKNNK-SVEEIYQKKTQLEHILLRPDTYVGSCERAEEKAWVYDAATKSLTHKQVSFVPG 79
Query: 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTM 143
LYKIFDEILVNA DNK RDPKM +++ ++ E I V+N+G GIPV HKDE ++VP +
Sbjct: 80 LYKIFDEILVNATDNKVRDPKMKELRVDIDVEQGLIRVYNDGNGIPVEMHKDEGVYVPEL 139
Query: 144 IFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSS 203
IFGHLLTSSNY +D E KV GGRNGYGAKL NIFS+
Sbjct: 140 IFGHLLTSSNY-------------------------DDNEKKVVGGRNGYGAKLANIFST 174
Query: 204 KFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSL-DK 261
+F+VET K ++QV+K+NMS PE+ K +++T ITF PD KF M SL ++
Sbjct: 175 EFIVETCDGSRGKRYRQVFKNNMSVKGEPELSKCKKSENWTCITFKPDFEKFGMESLVNE 234
Query: 262 DMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENV 320
D+ L+ +R YDAA + K+ ++LNGEKL VK F DYV LY D Q I+E
Sbjct: 235 DVAALMCKRVYDAAGNIGKNTNIYLNGEKLEVKGFSDYVSLYLDGQAN----APKIFEKT 290
Query: 321 NPRWEVAIAPSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTI 379
RWEV + SD FQQ SFVN I T KGG HV++V D I ++++E ++KK K
Sbjct: 291 MDRWEVCVTISDTAQFQQCSFVNGICTMKGGTHVNSVADQISQKLLEKIQKKEK------ 344
Query: 380 IMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQT 439
+ KN LK FQVKNH+W+F+N LI NP FDSQT
Sbjct: 345 ---------SCKN--------------------LKAFQVKNHLWVFVNALIENPAFDSQT 375
Query: 440 KENMTLQKGSFGS--------------------------------------------TCV 455
KE + + FGS T +
Sbjct: 376 KETLITRPNKFGSAYAPSDAIIKKLMESGVVDNIMSWAQFKQSKELKKTDGAKRSRLTGI 435
Query: 456 PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATH 515
PKL+DANDAG +NS CTLILTEGDSAK+LAVSGL VVGRDKYGVFPLRGKLLNVR+A+H
Sbjct: 436 PKLDDANDAGGRNSESCTLILTEGDSAKALAVSGLSVVGRDKYGVFPLRGKLLNVRDASH 495
Query: 516 KQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIH 575
+QI N EIN++ +ILGLQ+ K+Y + K+LRYG+LMIMTDQD DGSHIKGL+INF+H
Sbjct: 496 EQIKNNTEINHIKQILGLQHGKEYDSA---KSLRYGKLMIMTDQDHDGSHIKGLLINFLH 552
Query: 576 HNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
++P+LL++P FL EFITPIIKATK ++ FY++PE+E WKE + IKYYK
Sbjct: 553 AHFPSLLKIPGFLLEFITPIIKATKGKQSKVFYTMPEYEAWKEANDGTSGWSIKYYK 609
Score = 134 bits (336), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 82/112 (73%), Gaps = 3/112 (2%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEP++Y P++P+VLVNGAEGIGTGW T IPN NPR+++ NI+ ++ GE P+ M PWY++
Sbjct: 818 RIEPDYYYPVLPLVLVNGAEGIGTGWSTSIPNFNPRDLIANIRLVLEGESPVQMHPWYRH 877
Query: 719 FKGEID---YCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
FKG I G++R+ V G I D+ LE+TEL + WT+DYK+ L+ +L
Sbjct: 878 FKGSITEELVKGETRYNVTGSYNIRDECTLEVTELPLRSWTSDYKEFLEEML 929
Score = 53.1 bits (126), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
YDYLLGM W+LT+E+ +EL +++ K E+ L K DLW DLD L +
Sbjct: 1097 YDYLLGMPLWNLTLEKVDELCAEKEAKEAEVAELHKTTEKDLWMKDLDTLEQ 1148
>gi|238507856|ref|XP_002385129.1| DNA topoisomerase II [Aspergillus flavus NRRL3357]
gi|220688648|gb|EED45000.1| DNA topoisomerase II [Aspergillus flavus NRRL3357]
Length = 1717
Score = 590 bits (1520), Expect = e-165, Method: Compositional matrix adjust.
Identities = 310/647 (47%), Positives = 397/647 (61%), Gaps = 119/647 (18%)
Query: 40 SQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNK 99
+QLEHI+ RPDTYIGS+E ++ MW+ + E++ ME RE++YVPGLYKIFDEI+VNA DNK
Sbjct: 125 TQLEHIIKRPDTYIGSIERTSQQMWVYSTESDGMEFREVSYVPGLYKIFDEIVVNAADNK 184
Query: 100 QRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEED 159
Q D M+ I++T+++ET ISVWNNG+GIP+ H EK++VP +IF
Sbjct: 185 QNDANMDEIRVTISRETGEISVWNNGRGIPIEMHAKEKIYVPELIF-------------- 230
Query: 160 KVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFK 219
GHLLTSSNY+D + KVTGGRNG+GAKLCN+FS++F +ET S KK +K
Sbjct: 231 -----------GHLLTSSNYDDTQQKVTGGRNGFGAKLCNVFSTEFSIETQDSRQKKKYK 279
Query: 220 QVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTK 279
Q W NM+K+ +I DD+TK+TF PD KF M +D D L+ RR YD A + K
Sbjct: 280 QTWTSNMTKMGKAKITDAKGDDYTKVTFKPDYAKFGMDGMDNDFEALVKRRVYDLAGTAK 339
Query: 280 DVKVFLNGEKLPVKNFQDYVKLYTD---RQDEDGDPV---KIIYENVNPRWEVAIAPSDR 333
V V LNG ++PV+NF+ Y+++YT R+ D P +II + +PRWEV A SD
Sbjct: 340 -VAVKLNGSRVPVRNFKKYMEMYTKAIRRERGDDGPAAKDEIITCSPDPRWEVGFAVSDG 398
Query: 334 GFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNN 393
FQQVSFVNSIATT GG HV+ + D I ++ + VKKKNK+
Sbjct: 399 SFQQVSFVNSIATTSGGTHVNYIADQICSKLADQVKKKNKN------------------- 439
Query: 394 KLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGST 453
G LKP Q++NHI+IF+N IVNP F SQTKE +T + FGS
Sbjct: 440 ----------------GATLKPAQIRNHIFIFVNAQIVNPAFTSQTKEQLTTKSSQFGSK 483
Query: 454 CV-------------------------------------------PKLEDANDAGTKNSI 470
CV PKL DAN AGTK+
Sbjct: 484 CVLEEDFYKKILKTDVMSNILHFAQQKADQMLKKTDGGRRARMNNPKLTDANKAGTKDGH 543
Query: 471 DCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKI 530
CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+AT +QI +NAEI N+
Sbjct: 544 HCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDATFEQISKNAEIQNIKNF 603
Query: 531 LGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEE 589
LGLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+INF+ +P+LLR+P FL E
Sbjct: 604 LGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINFLQAQFPSLLRIPEFLIE 660
Query: 590 FITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FITPIIK K ++ SF+++PE+E WKEE + ++ KYYK
Sbjct: 661 FITPIIKVWKGDPKNPTKQRSFFTMPEYEAWKEEHKHERGWEHKYYK 707
Score = 136 bits (343), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE Y+P++PM+LVNGA+GIGTGW + IPN+NP +IVDN+KR++ GE+ PM+PW++
Sbjct: 916 KIEPEIYVPVVPMILVNGADGIGTGWSSSIPNYNPEDIVDNLKRLMDGEETRPMQPWFRG 975
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F GE+ G RF +G I + ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 976 FTGEVTDVGGDRFKFSGIIKETGEKEVEITELPIRTWTQDFKDKLEDIIK-AEK 1028
Score = 50.8 bits (120), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
YDYLLGM WSLT ER +L ++ +K E++ L K + D+W DLD
Sbjct: 1193 YDYLLGMAIWSLTQERVEKLRRQIGEKEVEVDALIKMSKEDIWKRDLD 1240
>gi|212531355|ref|XP_002145834.1| DNA topoisomerase II [Talaromyces marneffei ATCC 18224]
gi|210071198|gb|EEA25287.1| DNA topoisomerase II [Talaromyces marneffei ATCC 18224]
Length = 1696
Score = 590 bits (1520), Expect = e-165, Method: Compositional matrix adjust.
Identities = 313/651 (48%), Positives = 399/651 (61%), Gaps = 119/651 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +Q EHI+ RPDTYIGS+E T+ MW+ + T M RE+T+VPGLYKIFDEI+VNA
Sbjct: 132 YQKLTQYEHIIKRPDTYIGSIEKTTQQMWVYDSATESMAFREVTFVPGLYKIFDEIVVNA 191
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQ D KM+ I+IT+++E+ ISVWNNG+GIP+ H EK++VP +IFGHLLTSSNY+
Sbjct: 192 ADNKQNDEKMDEIRITIDRESGVISVWNNGRGIPIEIHSKEKIYVPELIFGHLLTSSNYD 251
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D G + KVTGGRNG+GAKLCN+FS++F +ET S
Sbjct: 252 D--------------GQM-----------KVTGGRNGFGAKLCNVFSTEFSIETCDSRQG 286
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K + Q W DNMSKV +I S DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 287 KKYHQTWTDNMSKVGKAKITSSKSDDYTKVTFKPDYQKFGMDGMDDDFEALVKRRVYDLA 346
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDED-GDPVKIIYENVNPRWEVAIA 329
+ K V V LNG ++PV+NF+ Y+++YT +R +E D +I+ + +PRWEV A
Sbjct: 347 GTAK-VAVKLNGSRIPVRNFKKYMEMYTKAIKKERGEEAVNDKSEIVTASPDPRWEVGFA 405
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ + D I ++ E VKKKNK
Sbjct: 406 VSDGSFQQVSFVNSIATTSGGSHVNYIADQICNRLAEAVKKKNKQ--------------- 450
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G +LK Q++NHI+IF+N LIVNP F SQTKE +T +
Sbjct: 451 --------------------GASLKASQIRNHIFIFVNALIVNPAFTSQTKEQLTTKPSQ 490
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS C+ PKL DAN AGT
Sbjct: 491 FGSKCILDDDFYKKVLKTEVMTNILHFAEKKADQLLKKTDGGRRSRMNNPKLTDANKAGT 550
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI N
Sbjct: 551 KDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQN 610
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ +GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+INF+ +P+LL++P
Sbjct: 611 IKSFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINFLQVQFPSLLKIPE 667
Query: 586 FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPIIK K + SF+++PE+E+WKEE N +++ KYYK
Sbjct: 668 FLIEFITPIIKVWKGDPKNPTKSKSFFTMPEYEQWKEENKNDLSWQHKYYK 718
Score = 139 bits (350), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 86/114 (75%), Gaps = 1/114 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE Y+P++P++L+NGA+GIGTGW + IPN+NP +IV N+KRM+ GE+P PM+PW++
Sbjct: 927 KIEPELYVPVVPLILINGADGIGTGWSSSIPNYNPEDIVANLKRMMDGEEPEPMQPWFRG 986
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F GE+ G R+ +G I L+D ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 987 FNGEVTPQGPDRYKFSGRIHELNDKEVEITELPIRTWTQDFKDKLEDIIK-AEK 1039
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
YDYLLGM WSLT ER +LL++ DK E++ L K + ++W DLD
Sbjct: 1209 YDYLLGMAIWSLTQERVEKLLRQIGDKEVEIDELIKLSKEEIWRRDLDGF 1258
>gi|18369810|dbj|BAB84100.1| DNA topoisomerase II [Aspergillus flavus]
Length = 1219
Score = 590 bits (1520), Expect = e-165, Method: Compositional matrix adjust.
Identities = 313/656 (47%), Positives = 402/656 (61%), Gaps = 119/656 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+V + Y K +QLEHI+ RPDTYIGS+E ++ MW+ + E++ ME RE++YVPGLYKIFDE
Sbjct: 21 NVSEKYHKLTQLEHIIKRPDTYIGSIERTSQQMWVYSTESDGMEFREVSYVPGLYKIFDE 80
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
I+VNA DNKQ D M+ I++T+++ET ISVWNNG+GIP+ H EK++VP +IF
Sbjct: 81 IVVNAADNKQNDANMDEIRVTISRETGEISVWNNGRGIPIEMHAKEKIYVPELIF----- 135
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
GHLLTSSNY+D + KVTGGRNG+GAKLCN+FS++F +ET
Sbjct: 136 --------------------GHLLTSSNYDDTQQKVTGGRNGFGAKLCNVFSTEFSIETQ 175
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
S KK +KQ W NM+K+ +I DD+TK+TF PD KF M +D D L+ RR
Sbjct: 176 DSRQKKKYKQTWTSNMTKMGKAKITDAKGDDYTKVTFKPDYAKFGMDGMDNDFEALVKRR 235
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD---RQDEDGDPV---KIIYENVNPRW 324
YD A + K V V LNG ++PV+NF+ Y+++YT R+ D P +II + +PRW
Sbjct: 236 VYDLAGTAK-VAVKLNGSRVPVRNFKKYMEMYTKAIRRERGDDGPAAKDEIITCSPDPRW 294
Query: 325 EVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFG 384
EV A SD FQQVSFVNSIATT GG HV+ + D I ++ + VKKKNK+
Sbjct: 295 EVGFAVSDGSFQQVSFVNSIATTSGGTHVNYIADQICSKLADQVKKKNKN---------- 344
Query: 385 NKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT 444
G LKP Q++NHI+IF+N IVNP F SQTKE +T
Sbjct: 345 -------------------------GATLKPAQIRNHIFIFVNAQIVNPAFTSQTKEQLT 379
Query: 445 LQKGSFGSTCV-------------------------------------------PKLEDA 461
+ FGS CV PKL DA
Sbjct: 380 TKSSQFGSKCVLEEDFYKKILKTDVMSNILHFAQQKADQMLKKTDGGRRARMNNPKLTDA 439
Query: 462 NDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILEN 521
N AGTK+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+AT +QI +N
Sbjct: 440 NKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDATFEQISKN 499
Query: 522 AEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTL 581
AEI N+ LGLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+INF+ +P+L
Sbjct: 500 AEIQNIKNFLGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINFLQAQFPSL 556
Query: 582 LRLP-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
LR+P FL EFITPIIK K ++ SF+++PE+E WKEE + ++ KYYK
Sbjct: 557 LRIPEFLIEFITPIIKVWKGDPKNPTKQRSFFTMPEYEAWKEEHKHERGWEHKYYK 612
Score = 135 bits (340), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE Y+P++PM+LVNGA+GIGTGW + IPN+NP +IVDN+KR++ GE+ PM+PW++
Sbjct: 821 KIEPEIYVPVVPMILVNGADGIGTGWSSSIPNYNPEDIVDNLKRLMDGEETRPMQPWFRG 880
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F GE+ G RF +G I + ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 881 FTGEVTDVGGDRFKFSGIIKETGEKEVEITELPIRTWTQDFKDKLEDIIK-AEK 933
Score = 53.9 bits (128), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 30/145 (20%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCP 911
YDYLLGM WSLT ER +L ++ +K E++ L K + D+W DLD + +
Sbjct: 1104 YDYLLGMAIWSLTQERVEKLRRQIGEKEVEVDALIKMSKEDIWKRDLDDFIAEWRFQLED 1163
Query: 912 GGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAPPPTKASPVKKKKPAAKRPAPK 971
R R +A+ + + S +++T+ + + KK+K A
Sbjct: 1164 EHRRQRKVAMMGR---RTSAKLMTA---------------AGRGAGAKKRKAA------- 1198
Query: 972 SDSSDLSDSDGDSDFASRKKKTAAA 996
L D D DFA+ K K +AA
Sbjct: 1199 -----LGDDPDDEDFAAPKTKKSAA 1218
>gi|26984133|gb|AAN85207.1| DNA topoisomerase II [Nicotiana tabacum]
gi|26984168|gb|AAN85208.1| DNA topoisomerase II [Nicotiana tabacum]
Length = 1482
Score = 589 bits (1519), Expect = e-165, Method: Compositional matrix adjust.
Identities = 321/653 (49%), Positives = 411/653 (62%), Gaps = 115/653 (17%)
Query: 28 NKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKI 87
N ++E+ YQKK+QLEHILLRPDTYIGSVE T+T+W+ E + M R +TYVPGLYKI
Sbjct: 19 NGKTIEQTYQKKTQLEHILLRPDTYIGSVEKHTQTLWVW--ENDKMTHRPVTYVPGLYKI 76
Query: 88 FDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGH 147
FDEILVNA DNKQRDPKM+ +++ ++ E N ISV+NNG GIPV H++E ++VP +IFGH
Sbjct: 77 FDEILVNAADNKQRDPKMDAVEVVIDPEQNFISVYNNGDGIPVEIHQEEGVYVPELIFGH 136
Query: 148 LLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVV 207
LLTSSNY +D E K TGGRNGYGAKL NIFS++FV+
Sbjct: 137 LLTSSNY-------------------------DDAEKKTTGGRNGYGAKLTNIFSTEFVI 171
Query: 208 ETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDL 266
ET+ + +K +KQV+ NM K P I K + +++TK++ PDL KF M L++D+V L
Sbjct: 172 ETADGKRQKKYKQVFSSNMGKKGEPIITKCKASENWTKVSSKPDLAKFNMEHLEEDVVAL 231
Query: 267 ITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWE 325
+ +R D K VKV LN +++PVK+F++Y KL+ D D + +K+ + RWE
Sbjct: 232 MRKRVIDLGGCLGKTVKVKLNEQRIPVKSFEEYCKLFLDSTDAKREFLKVTDADGLLRWE 291
Query: 326 VAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
+ ++ S+ FQQVSFVNSIAT KGG HVD V + I I+ V KKNK+
Sbjct: 292 ICVSLSEGQFQQVSFVNSIATIKGGTHVDYVANQIANHIMGAVIKKNKNAN--------- 342
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTL 445
+K VKNH+W+F+N LI NP FDSQTKE +TL
Sbjct: 343 ---------------------------IKAHAVKNHLWMFVNALIDNPAFDSQTKETLTL 375
Query: 446 QKGSFGSTC--------------------------------------------VPKLEDA 461
++ SFGS C V KLEDA
Sbjct: 376 RQSSFGSKCELQPDFLKKVEKNIGIVETLLSWADFKNSKDLKKTDGKKSEKVKVEKLEDA 435
Query: 462 NDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILEN 521
NDAG +NS CTLILTEGDSAK+LA++G+ VVGRD YGVFPLRGKLLNVREA+HKQ+ EN
Sbjct: 436 NDAGGRNSEKCTLILTEGDSAKALAMAGISVVGRDHYGVFPLRGKLLNVREASHKQVSEN 495
Query: 522 AEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTL 581
EI + KILGLQ K+Y +V K+LRYG LMIMTDQD DGSHIKGL+INFIH WP+L
Sbjct: 496 KEIEAIKKILGLQTGKEYDSV---KSLRYGHLMIMTDQDHDGSHIKGLLINFIHTFWPSL 552
Query: 582 LRLP-FLEEFITPIIKAT-KAREELSFYSLPEFEEWKEET-TNWHTYKIKYYK 631
L++P FL EFITPI+KAT K+ + LSFY++PE+E W++ N + IKYYK
Sbjct: 553 LKVPSFLIEFITPIVKATHKSGKILSFYTMPEYESWRKSLGANSSGWSIKYYK 605
Score = 125 bits (313), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 77/111 (69%), Gaps = 4/111 (3%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY+PI+PMVL+NG+EGIGTGW + +PN+NPR++V N++R++ E PM PWYK F
Sbjct: 815 IEPTWYVPIVPMVLINGSEGIGTGWSSYVPNYNPRDLVANVRRLLNDEPMEPMDPWYKGF 874
Query: 720 KGEIDYC----GDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
KG I+ + + V G I +++ L I+EL V +WT DYK L+++
Sbjct: 875 KGTIEKTATKEAGATYTVTGIIEEVNETTLRISELPVRRWTEDYKQFLESM 925
Score = 47.4 bits (111), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALR----EKDK 906
DYDYLL M +LT+E+ EL +RD E+ ++ P LW DLD L E+DK
Sbjct: 1100 DYDYLLSMPIGTLTLEKVQELCAERDQLNGEVEDMRNATPKLLWLKDLDVLEKQLDEQDK 1159
Query: 907 I 907
I
Sbjct: 1160 I 1160
>gi|71018835|ref|XP_759648.1| hypothetical protein UM03501.1 [Ustilago maydis 521]
gi|46099406|gb|EAK84639.1| hypothetical protein UM03501.1 [Ustilago maydis 521]
Length = 1518
Score = 589 bits (1518), Expect = e-165, Method: Compositional matrix adjust.
Identities = 322/695 (46%), Positives = 416/695 (59%), Gaps = 133/695 (19%)
Query: 4 DESDFDPDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETM 63
D S D + + P P K AN S + YQK SQLEHIL RPDTYIGSVE TE +
Sbjct: 70 DVSMVDSEADVSFQPPVPVK--SANSKSASETYQKLSQLEHILKRPDTYIGSVEKHTEKL 127
Query: 64 WLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWN 123
W+ ++ M RE TYVPGLYKIFDEILVNA DNK RD M +K+ +N+E +I VWN
Sbjct: 128 WVFDKSKKQMVYRETTYVPGLYKIFDEILVNAADNKARDSNMTALKVEINREEGSIMVWN 187
Query: 124 NGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEE 183
NG GIPV H+ E++++P +IFGHLLTSSNY +D E
Sbjct: 188 NGHGIPVEMHEKERVYIPELIFGHLLTSSNY-------------------------DDNE 222
Query: 184 DKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDF 242
KVTGGRNGYGAKL NI+S++F VET+ S+ + +KQ + NM + P+I SK D++
Sbjct: 223 AKVTGGRNGYGAKLANIYSTEFTVETADSKNQCKYKQTFTKNMHEKGKPKITKHSKNDEY 282
Query: 243 TKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY 302
T ITF PDL F M ++D M L+ +R YD A + K +KV LNGE L +KNF+ YV++Y
Sbjct: 283 TSITFKPDLALFGMDAIDDHMEALMLKRVYDMAGTVKGIKVTLNGELLKIKNFKQYVEMY 342
Query: 303 ----------TDRQDED--GDPVK------IIYENVNPR---WEVAIAPSDRGFQQVSFV 341
D +ED G P IIYE+ + WEVA A SD F+QVSFV
Sbjct: 343 VSAINELGGKADNGEEDAAGLPTSAAPKPAIIYESTVDKGRNWEVAFAVSDGEFRQVSFV 402
Query: 342 NSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTL 401
N+IAT KGG+HVD V D ++ ++IE V KK+K G +
Sbjct: 403 NNIATIKGGKHVDHVADQVISRLIEHV-KKDKHTGKVM---------------------- 439
Query: 402 IDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--------- 452
P QV+ +W+F+NC IVNPTFD QTKE +TL++ +FGS
Sbjct: 440 -------------PNQVRQQLWVFVNCQIVNPTFDGQTKETLTLKQSAFGSKWTLTDEFA 486
Query: 453 -----------------------------------TCVPKLEDANDAGTKNSIDCTLILT 477
T +PKLEDAN+AG + + DCTLILT
Sbjct: 487 RKVIKSGVVDNIVSFARFKQDQALKKTDGHKRTRITNIPKLEDANNAGGRKAKDCTLILT 546
Query: 478 EGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSK 537
EGDSAKSLAV+G+ VGRD YGVFPLRGKLLNVREA+H QI++NAEI + +ILGLQ+ K
Sbjct: 547 EGDSAKSLAVAGIVEVGRDNYGVFPLRGKLLNVREASHDQIMKNAEIKAIKEILGLQHGK 606
Query: 538 KYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIK 596
+Y D +LRYG +MIMTDQD DGSHIKGLIINF+ H +P+LL++P FL EFITPI++
Sbjct: 607 QYL---DTNSLRYGSIMIMTDQDHDGSHIKGLIINFLDHFYPSLLKIPGFLVEFITPIVR 663
Query: 597 ATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
K ++++SF+++PE+E W++ + IKYYK
Sbjct: 664 CRKGKQDISFFTIPEYETWRDAHNGGKGWHIKYYK 698
Score = 143 bits (361), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 84/114 (73%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
++EP WYIP++P VL+NGAEGIGTGW T +PN+NP EIV N++R + GED +PMKPWY+
Sbjct: 907 KVEPHWYIPVVPQVLLNGAEGIGTGWSTSVPNYNPHEIVANLRRRMAGEDVVPMKPWYRG 966
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F G+++ G RF ++G + +D+ EITEL + WT++YK+ L+ + ++K
Sbjct: 967 FNGDVEEFGPGRFKISGRVTQIDEKTYEITELPIRTWTSNYKELLEERIVSSDK 1020
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 849 DKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDL 898
D D+DYLL M ++LT E+ ++LLK+RD K EL IL ++P +LW +DL
Sbjct: 1182 DSDFDYLLNMAIYNLTKEKVDKLLKERDHKEEELKILIGRSPQNLWDEDL 1231
>gi|296809619|ref|XP_002845148.1| DNA topoisomerase II [Arthroderma otae CBS 113480]
gi|238844631|gb|EEQ34293.1| DNA topoisomerase II [Arthroderma otae CBS 113480]
Length = 1676
Score = 588 bits (1516), Expect = e-164, Method: Compositional matrix adjust.
Identities = 314/651 (48%), Positives = 390/651 (59%), Gaps = 119/651 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHIL RPDTYIGSVE + MW+ N T ME RE++YVPGLYKIFDEILVNA
Sbjct: 129 YQKITQLEHILKRPDTYIGSVERTEKQMWVYNSTTELMEYREVSYVPGLYKIFDEILVNA 188
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQ DP MN I++T+++E ISVWNNG+GIPV H EK+++P +IFGHLLTSSNYN
Sbjct: 189 ADNKQNDPNMNEIRVTLDKEGGEISVWNNGRGIPVEVHSKEKIYIPELIFGHLLTSSNYN 248
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D +++KVTGGRNGYGAKLCNIFS++F +ET+ S K
Sbjct: 249 D-------------------------QQEKVTGGRNGYGAKLCNIFSNEFTIETADSRTK 283
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K FK W +NMS + P+I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 284 KKFKLTWTNNMSAMGKPKITECKGDDYTKVTFKPDFAKFGMEGMDDDFEALVKRRVYDMA 343
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDR------QDEDGDPVKIIYENVNPRWEVAIA 329
T V LNG K+PVK+F+ Y+++YT +D D II E+ + RWE+
Sbjct: 344 G-TCGTAVKLNGTKIPVKSFKKYMEMYTKAIKTERGEDPTSDKNDIITESPDRRWEIGFT 402
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ + D I ++ + +KKKNK
Sbjct: 403 VSDGSFQQVSFVNSIATTSGGTHVNYISDQICNKLADALKKKNK---------------- 446
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LK Q+KNHI++F+NC IVNP F SQTKE +T +
Sbjct: 447 -------------------TGATLKAAQIKNHIFLFVNCQIVNPAFTSQTKEQLTTRSSQ 487
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS C+ PKL DAN AGT
Sbjct: 488 FGSKCIVSDEFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAGT 547
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI N
Sbjct: 548 KEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQN 607
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ +GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +PTLL++P
Sbjct: 608 IKNFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKIPG 664
Query: 586 FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K SF++LPE+EEWKE + ++ KYYK
Sbjct: 665 FLIEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKETHAHDKKWQKKYYK 715
Score = 135 bits (341), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 83/108 (76%), Gaps = 1/108 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P++L+NGA+GIGTGW T IPN+NP ++V N+KR++ GE+ +PMKPW++ F
Sbjct: 925 IEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVANLKRLMAGEELVPMKPWFRGF 984
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
KGE+ GD R+ +G I D+++EITEL + WT D+KD L+ ++
Sbjct: 985 KGEVTGSGD-RYKFSGIIKQTGDNEVEITELPIRTWTQDFKDRLEEII 1031
Score = 51.6 bits (122), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 19/167 (11%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCP 911
YDYLL M WSLT ER +L ++ DK E++ L K + D+W DLD + +
Sbjct: 1207 YDYLLSMPLWSLTQERVEKLRRQIGDKEMEVDALIKLSKEDIWRKDLDDFIAEWRFQLED 1266
Query: 912 GGNRTRGLALKRQ---TRYQPSNRVLTSRDEPMVVSSGEDA---PPPTKASPVKKKKPAA 965
NR + +A + + + + +RV ++ +SG+D+ P K + V + +P
Sbjct: 1267 EENRRKKIAGRGRRLSAKVKTGSRVTVAKKRK--ANSGDDSDFDAPKGKKATVNRVQPKG 1324
Query: 966 ------KRPAPKSDSSDLSDSDGDSD-----FASRKKKTAAAKKAKP 1001
+P PK+ D DSD + K K AKP
Sbjct: 1325 GLLDYLGKPKPKAKIKSNVDGADDSDEFEVEVMPKPKSRGTTKAAKP 1371
>gi|299755855|ref|XP_001828929.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
gi|298411411|gb|EAU92936.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
Length = 1557
Score = 588 bits (1515), Expect = e-164, Method: Compositional matrix adjust.
Identities = 304/648 (46%), Positives = 400/648 (61%), Gaps = 120/648 (18%)
Query: 40 SQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNK 99
+QLEHIL RPD+YIGS+E IT MW + ET M RE+ YVPG +KI DEILVNA DNK
Sbjct: 92 TQLEHILKRPDSYIGSIETITTPMWTYDSETKRMVHREVKYVPGFFKIVDEILVNAADNK 151
Query: 100 QRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEED 159
DP M+ +K+T++ E TISV+NNG+GIP+ H EKM++P MIFGHLLTS+NY
Sbjct: 152 INDPSMDTLKVTIDVEEGTISVYNNGRGIPIEIHSKEKMYIPEMIFGHLLTSTNY----- 206
Query: 160 KVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFK 219
+D+E K+TGGRNGYGAKL NI+S +F VET+ + +K
Sbjct: 207 --------------------DDDEKKLTGGRNGYGAKLANIYSLEFTVETADKNTSQKYK 246
Query: 220 QVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAST 278
Q W DNMSK +I ++ +++T+ITF PDL +F M S+D+D V L+ RR +D A +
Sbjct: 247 QTWTDNMSKCGKAKITKNTRGEEYTRITFRPDLKRFGMNSIDEDTVSLLKRRVFDMAGTV 306
Query: 279 KDVKVFLNGEKLPVKNFQDYVKLYTDRQDE-----DGDPVK----IIYENVNPRWEVAIA 329
KDVKVFLN E+L +KNF+ YV++Y E G + +I+E ++ RWE+A
Sbjct: 307 KDVKVFLNDERLKIKNFKQYVEMYVSSVQEAAAEKSGGAAQPKQTVIHEQISDRWEIAYT 366
Query: 330 PSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
S G FQ VSF NSIAT+KGG HV+ + D I K ++ + KKNK
Sbjct: 367 LSTEGTFQHVSFANSIATSKGGTHVNYIADQISKALVTSISKKNK--------------- 411
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
G +KP Q++NH+W+F+ LIVNPTFDSQTKE +TL
Sbjct: 412 ---------------------GATVKPAQIRNHMWLFVKSLIVNPTFDSQTKELLTLPSS 450
Query: 449 SFGST--------------------------------------------CVPKLEDANDA 464
FGS + KL DAN+A
Sbjct: 451 KFGSKPTISDEFIKKVAKSGIVDNVLNWAKFKADQQMKRADGTKRSRLLGLAKLSDANNA 510
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
GT+++ DCTLILTEGDSAK+LA++GLGVVGRD +GVFPLRGKLLNVREA H QI++N EI
Sbjct: 511 GTRHAQDCTLILTEGDSAKALAIAGLGVVGRDNFGVFPLRGKLLNVREARHDQIMKNEEI 570
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
N+ KI+GLQ++K YT + +LRYGRLMIMTDQD DGSHIKGLIINF+ H +P+LL++
Sbjct: 571 QNIKKIMGLQHNKDYT---NTSSLRYGRLMIMTDQDHDGSHIKGLIINFLDHFYPSLLKI 627
Query: 585 P-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P FL EF+TPI++ K + F+++PE+E+W EET + ++ KYYK
Sbjct: 628 PDFLVEFVTPIVRVKKGNKVKDFFTIPEYEQWLEETPDARKWESKYYK 675
Score = 133 bits (335), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 79/108 (73%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+P +PMVL+NGAEGIGTGW T IP +NP +IV N++RM++ E+P PM PW++ F
Sbjct: 885 IEPEWYMPTVPMVLINGAEGIGTGWSTNIPPYNPVDIVANLRRMMKEEEPEPMTPWWRGF 944
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
KGE+ G ++ V G ++D +EI+EL + KWT +KD L+ ++
Sbjct: 945 KGEVRPTGKGKYDVVGVATKINDTTVEISELPIHKWTRTFKDELEAMI 992
Score = 60.8 bits (146), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 69/135 (51%), Gaps = 9/135 (6%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDA-LREKDKIHP 909
D+DYLLGM +SLT ER +L ++ +K EL L +K+PTDLW+ DLD L E +K
Sbjct: 1183 DFDYLLGMAIYSLTRERIEKLKQQAHEKEQELLALLEKSPTDLWNTDLDKFLEEWEKDCM 1242
Query: 910 CPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAPP----PTKASPVKKKKPAA 965
+ G A+ + R Q R L +R + G+D+ P K + K+KPA
Sbjct: 1243 IFEQKKGEGGAVNGKKRKQ---RTLKTRKSIGMGRRGKDSDDDDFVPIKPNAAAKRKPAE 1299
Query: 966 -KRPAPKSDSSDLSD 979
KRP S + D
Sbjct: 1300 PKRPVASSSTKKEDD 1314
>gi|319411861|emb|CBQ73904.1| probable DNA topoisomerase II [Sporisorium reilianum SRZ2]
Length = 1513
Score = 587 bits (1514), Expect = e-164, Method: Compositional matrix adjust.
Identities = 325/704 (46%), Positives = 418/704 (59%), Gaps = 140/704 (19%)
Query: 2 SSDESDFDPDVQQ-------NGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIG 54
+S+ +D DPDV + P+P K + S + YQK SQLEHIL RPDTYIG
Sbjct: 64 NSNGADTDPDVSMMDSEADVSFQPPAPAKSGTSK--SASETYQKLSQLEHILKRPDTYIG 121
Query: 55 SVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQ 114
SVE TE +W+ ++ M RE TYVPG YKIFDEILVNA DNK RD MN +K+ +N+
Sbjct: 122 SVEKHTEKLWVYDKTKKQMAYRETTYVPGFYKIFDEILVNAADNKARDLNMNHLKVEINR 181
Query: 115 ETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLL 174
+ +I VWNNG GIPV H E++++P +IFGHLLTSSNY
Sbjct: 182 DEGSIMVWNNGHGIPVEMHDKERVYIPELIFGHLLTSSNY-------------------- 221
Query: 175 TSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI 234
+D E KVTGGRNGYGAKL NI+S++F VET+ S+ + +KQ + NM P+I
Sbjct: 222 -----DDNEAKVTGGRNGYGAKLANIYSTEFTVETADSKNQCKYKQTFSKNMHDKGKPKI 276
Query: 235 KSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVK 293
SK +++T ITF PDL F M S+D M L+ +R YD A + K +KV LNGE L VK
Sbjct: 277 TKHSKSEEYTCITFKPDLALFGMESIDDHMEALMLKRVYDMAGTVKGIKVTLNGEALKVK 336
Query: 294 NFQDYVKLY----------TDRQDEDGDPV--------KIIYENVNPR---WEVAIAPSD 332
NF+ YV++Y TD +E V IIYE+ + WEVA A SD
Sbjct: 337 NFKQYVEMYVTAINELGGKTDNTEEGAADVPTGAAPKPAIIYESTVDKGRNWEVAFAVSD 396
Query: 333 RGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKN 392
F+QVSFVN+IAT KGG+HVD V D ++ ++I+ VKK K
Sbjct: 397 GEFRQVSFVNNIATIKGGKHVDHVADQVISRLIDHVKKDKK------------------- 437
Query: 393 NKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS 452
K + P QV+ +W+F+NC IVNPTFD QTKE +TL++ +FGS
Sbjct: 438 ----TGKVM-------------PNQVRQQLWVFVNCQIVNPTFDGQTKETLTLKQSAFGS 480
Query: 453 --------------------------------------------TCVPKLEDANDAGTKN 468
T +PKLEDAN+AG +
Sbjct: 481 KWTLTDEFARKVIKSGVVDNIVSFARFKQDQALKKTDGHKRTRITNIPKLEDANNAGGRK 540
Query: 469 SIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLV 528
+ DCTLILTEGDSAKSLAV+G+ VGRD YGVFPLRGKLLNVREA+H QI++NAEI +
Sbjct: 541 AKDCTLILTEGDSAKSLAVAGIVEVGRDNYGVFPLRGKLLNVREASHDQIMKNAEIKAIK 600
Query: 529 KILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FL 587
+ILGLQ+ K+Y D+ +LRYG +MIMTDQD DGSHIKGLIINF+ H +P+LLR+P FL
Sbjct: 601 EILGLQHGKQYL---DVNSLRYGSIMIMTDQDHDGSHIKGLIINFLDHFYPSLLRIPGFL 657
Query: 588 EEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
EFITPI+K K ++ELSF+++PE+E W++ + IKYYK
Sbjct: 658 VEFITPIVKCRKGKQELSFFTIPEYETWRDSHNGGKGWHIKYYK 701
Score = 140 bits (352), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 83/114 (72%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
++EP WYIP++P VL+NGAEGIGTGW T +PN+NP EIV N++R GED +PMKPW++
Sbjct: 910 KVEPHWYIPVVPQVLMNGAEGIGTGWSTSVPNYNPHEIVANLRRRTAGEDIIPMKPWFRG 969
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F G+++ RF V+G + +D+ EITEL + WT++YK++L+ + +EK
Sbjct: 970 FTGDVEEFSPGRFKVSGRVTQIDEKTWEITELPIRTWTSNYKESLEERIVSSEK 1023
Score = 53.9 bits (128), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 849 DKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
D D+DYLL M ++LT E+ +LLK+RD K EL +L ++P +LW +DL E
Sbjct: 1185 DSDFDYLLNMAIYNLTKEKVEKLLKERDVKEEELKVLIGRSPQNLWDEDLGKFIE 1239
>gi|403419656|emb|CCM06356.1| predicted protein [Fibroporia radiculosa]
Length = 1571
Score = 587 bits (1514), Expect = e-164, Method: Compositional matrix adjust.
Identities = 301/647 (46%), Positives = 400/647 (61%), Gaps = 119/647 (18%)
Query: 40 SQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNK 99
SQLEHIL RPD+YIGSVE IT+ MW + + M +EI YVPG +KI DEILVNA DNK
Sbjct: 104 SQLEHILKRPDSYIGSVETITQPMWAWDSDRKLMVYKEIKYVPGFFKIVDEILVNAADNK 163
Query: 100 QRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEED 159
DP M+ IK+T++ N ISV+N+G+GIP+ H EK+++P +IFGHLL+SSNY
Sbjct: 164 INDPSMDTIKVTIDPRNNVISVYNSGRGIPIEMHSKEKIYIPELIFGHLLSSSNY----- 218
Query: 160 KVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFK 219
+D+E K+TGGRNGYGAKL NI+S +F ++T+ + +
Sbjct: 219 --------------------DDDEKKLTGGRNGYGAKLANIYSVEFTIDTADKNTGQKYV 258
Query: 220 QVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAST 278
Q W DNMSK+ +I S+ +++T++TF PDL +F M S+D+D V L+ +R +D A +
Sbjct: 259 QTWTDNMSKMGKAKITKNSRGEEYTRVTFKPDLKRFGMDSIDEDTVALLKKRVHDIAGTV 318
Query: 279 KDVKVFLNGEKLPVKNFQDYVKLYTDR-----QDEDGDPVK----IIYENVNPRWEVAIA 329
KDVKVFLN E+L +KNF+ YV+LY + D G + +IYE + RWEVA A
Sbjct: 319 KDVKVFLNDERLKIKNFKQYVELYLNSAAEQAADASGGAAQAKQTMIYEQIGTRWEVAFA 378
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
S+ FQQVSF NSI+T KGG HV + D + K ++ + KKNK
Sbjct: 379 VSEGAFQQVSFANSISTVKGGTHVQYIADQLAKNLVTFISKKNK---------------- 422
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
+KP Q+KNH+WIF+N LI NPTFDSQTKE +TL
Sbjct: 423 --------------------AATVKPPQIKNHMWIFVNALIENPTFDSQTKETLTLPSAK 462
Query: 450 FGS--------------------------------------------TCVPKLEDANDAG 465
FG+ + +PKL DAN+AG
Sbjct: 463 FGTKPSLSEEFMKKVQKSVIVDHILNWAKFKADQQLKKTDGSRRNRLSGLPKLSDANNAG 522
Query: 466 TKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEIN 525
T+ + +CTLILTEGDSAK+LAV+GL VVGRD YGVFPLRGKLLNVR+A H QI++N EI
Sbjct: 523 TRKASECTLILTEGDSAKTLAVAGLSVVGRDNYGVFPLRGKLLNVRDAKHDQIMKNEEIQ 582
Query: 526 NLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP 585
N+ KILGLQ++K Y +D+ LRYG+LMIMTDQD DGSHIKGL+IN+ H +P+LL++P
Sbjct: 583 NIKKILGLQHNKDY---KDVSGLRYGQLMIMTDQDHDGSHIKGLLINYFEHFYPSLLKVP 639
Query: 586 -FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EF+TPII+ATK + + FY++PE+E+W EET N +++ KY K
Sbjct: 640 HFLVEFVTPIIRATKGTQLIEFYTIPEYEQWLEETPNSASWRAKYLK 686
Score = 135 bits (341), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 78/107 (72%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE+Y+P +PMVL+NGAEGIGTGW T IP +NP +IV N++R++ GE+ LPM PW++ F
Sbjct: 896 IEPEYYMPTVPMVLINGAEGIGTGWSTNIPCYNPEDIVANLRRLMAGEEQLPMLPWWRGF 955
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
KG I D R+ V+G + LDD EITEL + KWT +YK L+ +
Sbjct: 956 KGTIKKTSDYRYDVSGIVTKLDDTTFEITELPIHKWTQNYKVELEAM 1002
Score = 48.9 bits (115), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
D+DYLLGM WSLT E+ +L ++ EL IL ++ P +W DLD E
Sbjct: 1179 DFDYLLGMAIWSLTKEKMEKLRQQAKQTEGELLILLERTPIQIWQCDLDRFLE 1231
>gi|242772741|ref|XP_002478098.1| DNA topoisomerase II [Talaromyces stipitatus ATCC 10500]
gi|218721717|gb|EED21135.1| DNA topoisomerase II [Talaromyces stipitatus ATCC 10500]
Length = 1678
Score = 587 bits (1513), Expect = e-164, Method: Compositional matrix adjust.
Identities = 310/651 (47%), Positives = 398/651 (61%), Gaps = 119/651 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHI+ RPDTYIGS+E T+ MW+ + T ME RE+TYVPGLYKIFDEI+VNA
Sbjct: 132 YQKLTQLEHIIKRPDTYIGSIEKTTQQMWVYDSATESMEFREVTYVPGLYKIFDEIVVNA 191
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQ D M+ I+ITV++E+ ISVWNNG+GIP+ H E++FVP +IFGHLLTSSNY+
Sbjct: 192 ADNKQNDENMDEIRITVDRESGVISVWNNGRGIPIEVHSKEQIFVPELIFGHLLTSSNYD 251
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D G + KVTGGRNG+GAKLCN+FS++F +ET S
Sbjct: 252 D--------------GQM-----------KVTGGRNGFGAKLCNVFSTEFTIETCDSRQG 286
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K ++Q W +NMSK+ +I + DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 287 KKYQQTWTENMSKMGKAKITASKVDDYTKVTFKPDYKKFGMEGMDDDFEALVKRRVYDLA 346
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDE-DGDPVKIIYENVNPRWEVAIA 329
+ K V V LNG ++P++NF+ Y+++YT +R +E D +I+ + +PRWEV
Sbjct: 347 GTAK-VAVKLNGSRIPIRNFKKYMEMYTKAIKKERGEEATNDKSEIVTASPDPRWEVGFT 405
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ + D I ++ E VKKKNK
Sbjct: 406 VSDGSFQQVSFVNSIATTSGGTHVNYIADQICNRLAEAVKKKNKQ--------------- 450
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LK Q++NHI+IF+N LIVNP F SQTKE +T +
Sbjct: 451 --------------------GATLKASQIRNHIFIFVNALIVNPAFTSQTKEQLTTKPSQ 490
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS C+ PKL DAN AGT
Sbjct: 491 FGSKCILDEDFYKKVLKTEVMTNILHFAEKKADQILKKTDGGRRSRMNNPKLTDANKAGT 550
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI N
Sbjct: 551 KDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASIDQISKNAEIQN 610
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ +GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+INF+ +P+LL++P
Sbjct: 611 IKSFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINFLQVQFPSLLKIPE 667
Query: 586 FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K + SF+++PE+E+WKEE T++ KYYK
Sbjct: 668 FLIEFITPIVKVWKGDPKNPTKSKSFFTMPEYEQWKEEHKYDRTWQHKYYK 718
Score = 140 bits (352), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 86/114 (75%), Gaps = 1/114 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE Y+P++P++L+NGA+GIGTGW + IPN+NP E+V N+KRM+ GE+P PM+PW++
Sbjct: 927 KIEPELYVPVVPLILINGADGIGTGWSSSIPNYNPEEVVANLKRMMDGEEPEPMQPWFRG 986
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
FKGE+ G R+ +G I + D ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 987 FKGEVTQQGPDRYKFSGLIKEVSDKEVEITELPIRTWTQDFKDKLEDIIK-AEK 1039
Score = 53.9 bits (128), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 33/48 (68%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
YDYLLGM WSLT ER +LL++ +K TE++ L K + D+W DLD
Sbjct: 1209 YDYLLGMAIWSLTQERVEKLLRQIGEKETEIDELIKLSKEDIWRRDLD 1256
>gi|83775666|dbj|BAE65786.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1437
Score = 587 bits (1513), Expect = e-164, Method: Compositional matrix adjust.
Identities = 310/647 (47%), Positives = 397/647 (61%), Gaps = 119/647 (18%)
Query: 40 SQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNK 99
+QLEHI+ RPDTYIGS+E ++ MW+ + E++ ME RE++YVPGLYKIFDEI+VNA DNK
Sbjct: 24 TQLEHIIKRPDTYIGSIERTSQQMWVYSTESDGMEFREVSYVPGLYKIFDEIVVNAADNK 83
Query: 100 QRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEED 159
Q D M+ I++T+++ET ISVWNNG+GIP+ H EK++VP +IF
Sbjct: 84 QNDANMDEIRVTISRETGEISVWNNGRGIPIEMHAKEKIYVPELIF-------------- 129
Query: 160 KVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFK 219
GHLLTSSNY+D + KVTGGRNG+GAKLCN+FS++F +ET S KK +K
Sbjct: 130 -----------GHLLTSSNYDDTQQKVTGGRNGFGAKLCNVFSTEFSIETQDSRQKKKYK 178
Query: 220 QVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTK 279
Q W NM+K+ +I DD+TK+TF PD KF M +D D L+ RR YD A + K
Sbjct: 179 QTWTSNMTKMGKAKITDAKGDDYTKVTFKPDYAKFGMDGMDNDFEALVKRRVYDLAGTAK 238
Query: 280 DVKVFLNGEKLPVKNFQDYVKLYTD---RQDEDGDPV---KIIYENVNPRWEVAIAPSDR 333
V V LNG ++PV+NF+ Y+++YT R+ D P +II + +PRWEV A SD
Sbjct: 239 -VAVKLNGSRVPVRNFKKYMEMYTKAIRRERGDDGPAAKDEIITCSPDPRWEVGFAVSDG 297
Query: 334 GFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNN 393
FQQVSFVNSIATT GG HV+ + D I ++ + VKKKNK+
Sbjct: 298 SFQQVSFVNSIATTSGGTHVNYIADQICSKLADQVKKKNKN------------------- 338
Query: 394 KLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGST 453
G LKP Q++NHI+IF+N IVNP F SQTKE +T + FGS
Sbjct: 339 ----------------GATLKPAQIRNHIFIFVNAQIVNPAFTSQTKEQLTTKSSQFGSK 382
Query: 454 CV-------------------------------------------PKLEDANDAGTKNSI 470
CV PKL DAN AGTK+
Sbjct: 383 CVLEEDFYKKILKTDVMSNILHFAQQKADQMLKKTDGGRRARMNNPKLTDANKAGTKDGH 442
Query: 471 DCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKI 530
CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+AT +QI +NAEI N+
Sbjct: 443 HCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDATFEQISKNAEIQNIKNF 502
Query: 531 LGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEE 589
LGLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+INF+ +P+LLR+P FL E
Sbjct: 503 LGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINFLQAQFPSLLRIPEFLIE 559
Query: 590 FITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FITPIIK K ++ SF+++PE+E WKEE + ++ KYYK
Sbjct: 560 FITPIIKVWKGDPKNPTKQRSFFTMPEYEAWKEEHKHERGWEHKYYK 606
Score = 135 bits (341), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE Y+P++PM+LVNGA+GIGTGW + IPN+NP +IVDN+KR++ GE+ PM+PW++
Sbjct: 815 KIEPEIYVPVVPMILVNGADGIGTGWSSSIPNYNPEDIVDNLKRLMDGEETRPMQPWFRG 874
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F GE+ G RF +G I + ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 875 FTGEVTDVGGDRFKFSGIIKETGEKEVEITELPIRTWTQDFKDKLEDIIK-AEK 927
Score = 50.8 bits (120), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
YDYLLGM WSLT ER +L ++ +K E++ L K + D+W DLD
Sbjct: 1098 YDYLLGMAIWSLTQERVEKLRRQIGEKEVEVDALIKMSKEDIWKRDLD 1145
>gi|342319562|gb|EGU11509.1| DNA topoisomerase 2 [Rhodotorula glutinis ATCC 204091]
Length = 1591
Score = 587 bits (1513), Expect = e-164, Method: Compositional matrix adjust.
Identities = 319/689 (46%), Positives = 420/689 (60%), Gaps = 154/689 (22%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
S + Y K +QLEH+L RPDTYIGS+EP+T+ MW+ +RE+ M R+ T+ PG YKIFDE
Sbjct: 136 SASETYVKLTQLEHVLKRPDTYIGSIEPVTQPMWVWDRESEKMVFRQTTFTPGFYKIFDE 195
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNK RDP M+ I++T+++E TI+V N+GKGIP+ +HK E +++P +IF
Sbjct: 196 ILVNAADNKVRDPTMSEIRVTIDEEKRTITVKNDGKGIPIEKHKKEGIYIPELIF----- 250
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
G+LLTSSNY+D+E K TGGRNGYGAKL NI+S++F+VET+
Sbjct: 251 --------------------GNLLTSSNYDDDEAKTTGGRNGYGAKLANIYSTEFIVETA 290
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKD--DFTKITFTPDLTKFKM-TSLDKDMVDLI 267
E K ++QV+ DNMS+ +P+I S KD +T ITFTPDL +F M D+D + L+
Sbjct: 291 DGESK--YRQVFSDNMSRKGAPKITSVKKDGEQYTLITFTPDLERFNMHDGFDRDTLALL 348
Query: 268 TRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVK--------------------------- 300
+R +D A VKV+LNG+ L K+F+ YV+
Sbjct: 349 HKRVWDMAGIVPKVKVYLNGKVLRCKDFKAYVEKFLAGTNEITGAAAAKKKGKKGEAPVT 408
Query: 301 ----LYTDRQDE-------DGDPVK--IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATT 347
L+ D +++ D D K +++E VN RW+VA A SD FQQVS+ N+IATT
Sbjct: 409 AAAALFGDEEEDADMRPAADADAAKQTVVFEKVNDRWDVAFAVSDGQFQQVSYCNAIATT 468
Query: 348 KGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVR 407
KGG HV V D IV+ ++++VKKK+K
Sbjct: 469 KGGSHVTYVADQIVQGLVDLVKKKHK---------------------------------- 494
Query: 408 LGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC------------- 454
G+ +KPFQ+KNHI +F+NC I NP+FDSQTKENMTL FGS C
Sbjct: 495 --GVQVKPFQIKNHIALFVNCKIDNPSFDSQTKENMTLGVKKFGSKCQLSDEFLKKVAKS 552
Query: 455 -------------------------------VPKLEDANDAGTKNSIDCTLILTEGDSAK 483
+ KLEDAN+AGT+N CTLILTEGDSAK
Sbjct: 553 GVIDNIVNWAKFKQDQALKKTDGSKRSRITGLVKLEDANNAGTRNGNKCTLILTEGDSAK 612
Query: 484 SLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVE 543
+LAVSGL VVGRD YGVFPLRGKLLNVREAT K +LENAEI + +I+GLQ K YT+ +
Sbjct: 613 ALAVSGLAVVGRDNYGVFPLRGKLLNVREATGKALLENAEIQAIKQIMGLQQGKTYTSTD 672
Query: 544 DMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKARE 602
+LRYG LMIM DQD DGSHIKGLIINF+ + +P+LL+LP FL EFITPI+K +K ++
Sbjct: 673 ---SLRYGSLMIMADQDHDGSHIKGLIINFLDYWFPSLLKLPNFLVEFITPIVKVSKGKK 729
Query: 603 ELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
E+SF+++PE+E WK ET + +KIKY+K
Sbjct: 730 EISFFTIPEYEAWKAETDDGRGWKIKYFK 758
Score = 129 bits (323), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 79/113 (69%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WYIPI+PMVLVNG++GIGTGW + IPN NP +IV N++R + GE+ P+ PWY+ F
Sbjct: 968 IEPSWYIPILPMVLVNGSDGIGTGWSSFIPNFNPSDIVANLRRKLDGEEMEPIHPWYRGF 1027
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
+G I+ + G I +DD +EITEL + WT +YK+ L++ + G++K
Sbjct: 1028 RGTIEKDAKEGYKCTGTIQRIDDSTVEITELPIRTWTQNYKEMLESWVAGSDK 1080
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 827 ERQAAEGEDDEAGSQTQEEEDP-------DKDYDYLLGMTFWSLTMERKNELLKKRDDKM 879
++ G+ D G +E EDP D DYDYLL M SLT E+ L+ +RD +
Sbjct: 1220 QKMHVAGDVDANGDGDEEVEDPEAVEAGADSDYDYLLNMQLSSLTREKVERLMAERDQRS 1279
Query: 880 TELNILKKKAPTDLWSDDLDALREK-DKIHPCPGGNRTRGL 919
EL+ L K++ DLW DLDA EK D + N+ R L
Sbjct: 1280 AELDALLKRSVQDLWRADLDAFMEKWDAMLEEDRANKARSL 1320
>gi|70992793|ref|XP_751245.1| DNA topoisomerase II [Aspergillus fumigatus Af293]
gi|66848878|gb|EAL89207.1| DNA topoisomerase II [Aspergillus fumigatus Af293]
gi|159130301|gb|EDP55414.1| DNA topoisomerase II [Aspergillus fumigatus A1163]
Length = 1660
Score = 586 bits (1511), Expect = e-164, Method: Compositional matrix adjust.
Identities = 310/661 (46%), Positives = 404/661 (61%), Gaps = 119/661 (18%)
Query: 26 PANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLY 85
PA + + YQK +QLEHI+ RPDTYIGSVE T+ MW+ + ET M+ +E++YVPGLY
Sbjct: 48 PATSTNASEKYQKLTQLEHIIKRPDTYIGSVERTTQFMWVYDSETEGMKYKEVSYVPGLY 107
Query: 86 KIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIF 145
KIFDEI+VNA DNKQ D M+ I++T+++E+ ISVWNNG+GIP+ H E ++VP +IF
Sbjct: 108 KIFDEIVVNAADNKQNDANMDEIRVTIDRESGEISVWNNGRGIPIEIHAKEGIYVPELIF 167
Query: 146 GHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF 205
GHLLTSSNY +D + KVTGGRNG+GAKLCN+FS++F
Sbjct: 168 GHLLTSSNY-------------------------DDTQKKVTGGRNGFGAKLCNVFSTEF 202
Query: 206 VVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVD 265
+ET S KK +KQ W +NMSK+ +I +D+TK+TF PD KF M +D D
Sbjct: 203 TIETQDSRQKKKYKQTWTNNMSKMGKAKITDAKGEDYTKVTFKPDYAKFGMEGMDDDFEA 262
Query: 266 LITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDGDPV-KIIYEN 319
L+ RR YD A +TK V V LNG ++PV+NF+ Y+++YT +R +ED + +II +
Sbjct: 263 LVKRRVYDLAGTTK-VAVKLNGSRIPVRNFKKYMEMYTKAIRRERGEEDTNAKDEIITCS 321
Query: 320 VNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTI 379
+PRWE+ A SD F QVSFVNSIATT GG HV+ + D I ++ + VKKKNK+
Sbjct: 322 PDPRWEIGFAVSDGSFHQVSFVNSIATTSGGTHVNYIADQICARLADQVKKKNKN----- 376
Query: 380 IMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQT 439
G LKP Q++NHI+IF+N LIVNP F SQT
Sbjct: 377 ------------------------------GATLKPAQIRNHIFIFVNALIVNPAFTSQT 406
Query: 440 KENMTLQKGSFGSTCV-------------------------------------------P 456
KE +T + FGS CV P
Sbjct: 407 KEQLTTKSSQFGSKCVLEEDFYKKILRTEVMNNILHFAQAKADQLLKKTDGGRRTRMNNP 466
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL DAN AGTK+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ +
Sbjct: 467 KLVDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASFE 526
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI +N EI N+ LGLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+INF+
Sbjct: 527 QISKNQEIQNIKNFLGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINFLQA 583
Query: 577 NWPTLLRLP-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYY 630
+P+LL++P FL EFITPI K K ++ SF+++PE+E WKEE + ++ KYY
Sbjct: 584 QFPSLLKIPEFLIEFITPIAKVWKGDPKNPTKQHSFFTMPEYEAWKEEHKHERGWEHKYY 643
Query: 631 K 631
K
Sbjct: 644 K 644
Score = 134 bits (338), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 1/114 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE Y+P++PM+L+NGA+GIGTGW + IPN+NP +IVDN+KR++ G+ PM+PW++
Sbjct: 853 KIEPEVYVPVVPMILINGADGIGTGWSSSIPNYNPEDIVDNLKRLMDGQPVKPMQPWFRG 912
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F GE+ G RF +G I D ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 913 FTGEVTALGGDRFKFSGIIKETGDKEVEITELPIRTWTQDFKDKLEEIIK-AEK 965
Score = 53.1 bits (126), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 832 EGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPT 891
E E+DE+G+ E E YDYLLGM WSLT ER +L ++ +K E++ L K +
Sbjct: 1118 EEEEDESGND--ETEVLSSAYDYLLGMPLWSLTHERVEKLRRQIGEKEVEIDALIKLSKE 1175
Query: 892 DLWSDDLD 899
D+W DLD
Sbjct: 1176 DIWKRDLD 1183
>gi|18369808|dbj|BAB84099.1| DNA topoisomerase II [Aspergillus candidus]
Length = 1096
Score = 586 bits (1510), Expect = e-164, Method: Compositional matrix adjust.
Identities = 313/651 (48%), Positives = 399/651 (61%), Gaps = 119/651 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHI+ RPDTYIGS+E T+ MW+ + T ME RE+T+VPGLYKIFDEI+VNA
Sbjct: 4 YQKLTQLEHIIKRPDTYIGSIEKATQQMWVYDSATESMEFREVTFVPGLYKIFDEIVVNA 63
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQ D KM+ I+IT+++E+ ISVWNNG+GIP+ H EK++VP +IFGHLLTSSNY+
Sbjct: 64 ADNKQNDEKMDEIRITIDRESGVISVWNNGRGIPIEIHSKEKIYVPELIFGHLLTSSNYD 123
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D G + KVTGGRNG+GAKLCN+FS++F +ET S
Sbjct: 124 D--------------GQM-----------KVTGGRNGFGAKLCNVFSTEFSIETVDSRQG 158
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K + Q W DNMSKV +I S +D+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 159 KKYVQTWTDNMSKVGKAKITSAKGEDYTKVTFKPDYKKFGMEGMDDDFEALVKRRVYDLA 218
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDG-DPVKIIYENVNPRWEVAIA 329
+ K V V LNG ++PV+NF+ Y+++YT +R +E D +I+ + +PRWEV A
Sbjct: 219 GTAK-VAVKLNGSRIPVRNFKKYMEMYTKAIKKERGEEAANDKSEIVTASPDPRWEVGFA 277
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ + D I ++ E VKKKNK
Sbjct: 278 VSDGSFQQVSFVNSIATTSGGSHVNYIADQICNRLAEAVKKKNKQ--------------- 322
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LK Q++NHI+IF+N LIVNP F SQTKE +T +
Sbjct: 323 --------------------GATLKASQIRNHIFIFVNALIVNPAFTSQTKEQLTTKPSQ 362
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS C+ PKL DAN AGT
Sbjct: 363 FGSKCILDDDFYKKVLKTEVMTNILHFAEKKADQLLKKTDGGKRSRMNNPKLTDANKAGT 422
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI N
Sbjct: 423 KDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASIDQISKNAEIQN 482
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ +GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+INF+ +P+LL++P
Sbjct: 483 IKSFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINFLQVQFPSLLKIPE 539
Query: 586 FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K + SF+++PE+E+WKEE N ++ KYYK
Sbjct: 540 FLIEFITPIVKVWKGDPKNPTKSKSFFTMPEYEQWKEEHKNDRAWQHKYYK 590
Score = 135 bits (339), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 86/114 (75%), Gaps = 1/114 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE Y+P++P++L+NGA+GIGTGW + IPN+NP +IV N+KRM+ GE+P PM+PW++
Sbjct: 799 KIEPELYVPVVPLILINGADGIGTGWSSSIPNYNPEDIVANLKRMMDGEEPEPMQPWFRG 858
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F G++ G R+ +G I L++ ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 859 FHGDVTPQGPDRYKFSGRIQELNEKEVEITELPIRTWTQDFKDKLEDIIK-AEK 911
>gi|154297045|ref|XP_001548951.1| hypothetical protein BC1G_12611 [Botryotinia fuckeliana B05.10]
gi|347838482|emb|CCD53054.1| hypothetical protein [Botryotinia fuckeliana]
Length = 1823
Score = 585 bits (1509), Expect = e-164, Method: Compositional matrix adjust.
Identities = 318/670 (47%), Positives = 400/670 (59%), Gaps = 126/670 (18%)
Query: 19 PSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREI 78
P PKK K S E+ YQK +QLEHI+ RPDTYIGSVE +TMW+ N E ME R++
Sbjct: 139 PKPKK----TKTSTEQ-YQKLTQLEHIIKRPDTYIGSVEKTEQTMWVFNSENKEMELRKV 193
Query: 79 TYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKM 138
T+VPGLYKIFDEI+VNA DNKQ D M IK+ V++E ISV N+G+GIPV H+ EK+
Sbjct: 194 TFVPGLYKIFDEIMVNAADNKQNDANMKNIKVVVDREKGEISVENDGRGIPVEIHEKEKI 253
Query: 139 FVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLC 198
++P MIFGHLLT SNY +D+E K TGGRNGYGAKLC
Sbjct: 254 YIPEMIFGHLLTGSNY-------------------------DDDEAKTTGGRNGYGAKLC 288
Query: 199 NIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTS 258
NIFS++F +ET S K +KQ W DNMSK+ I S DFT++TFTPD TKFKMT
Sbjct: 289 NIFSTEFTLETQDSNSGKRYKQTWTDNMSKMGKARISSSKNADFTRVTFTPDWTKFKMTG 348
Query: 259 LDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDGDPV 313
+D D ++ RR YD A + K VKV+LNG ++ + +F+ Y+++Y +R +D
Sbjct: 349 IDDDFEAMVKRRVYDMAGTVKGVKVYLNGAQIKL-DFKKYIEMYAKAINKERGLDDASAN 407
Query: 314 KIIYENV--NPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK 371
+I E+ +P+WEV A SD FQQVSFVNSIATT GG HV+ + D I +++EVVKK+
Sbjct: 408 SVIVEDSKGHPKWEVGFAVSDGSFQQVSFVNSIATTSGGTHVNYIADQICDKLLEVVKKR 467
Query: 372 NKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIV 431
N G LK QV+NHI++F+NCLI
Sbjct: 468 NPK-----------------------------------GALLKANQVRNHIFLFVNCLIT 492
Query: 432 NPTFDSQTKENMTLQKGSFGSTCV------------------------------------ 455
NP F SQTKE +T +K FGS CV
Sbjct: 493 NPAFTSQTKEQLTTRKPQFGSKCVLTEEFLKKIGKTEAVENILNFAAKKADLELAKSDGN 552
Query: 456 -------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLL 508
PKL DAN AGTK +CTLILTEGDSAK LAV+G V+ D+ GVFPLRGKLL
Sbjct: 553 RRSRMNNPKLVDANLAGTKRGHECTLILTEGDSAKGLAVAGRAVLDPDRIGVFPLRGKLL 612
Query: 509 NVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKG 568
NVR+A+H QI +NAEI N+ + LGL++ TT +D LRYG LMIM DQD DGSHIKG
Sbjct: 613 NVRDASHDQIAKNAEIQNIKQFLGLKHK---TTYKDTLGLRYGHLMIMADQDHDGSHIKG 669
Query: 569 LIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREE------LSFYSLPEFEEWKEETTN 621
L+INF+ +P+LL+LP F EFITPI+K K SF+++PE+EEWKE N
Sbjct: 670 LLINFLQVQYPSLLKLPEFFREFITPIVKVWKGPNPNKPTNLRSFFTMPEYEEWKESNNN 729
Query: 622 WHTYKIKYYK 631
++K KYYK
Sbjct: 730 DKSWKHKYYK 739
Score = 108 bits (270), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 78/120 (65%), Gaps = 8/120 (6%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIK-RMIRGED-----PL-PM 712
IEP Y P++PMVL+NGAEGIGTGW T IPN++P E+V+N+K RM R +D P M
Sbjct: 949 IEPVTYFPVVPMVLINGAEGIGTGWSTNIPNYHPVEVVNNLKRRMGRLDDSGEEKPFETM 1008
Query: 713 KPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
PW++ +KG + G R+ NG I D ++EITEL + WT D+K L+ ++ AEK
Sbjct: 1009 MPWFRGWKGTPEPAGPDRYKFNGIIRETGDTEVEITELPIRMWTDDFKAKLEEVIK-AEK 1067
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 842 TQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
T +E+ +DYDYLLG+ WSLT ER ++L K+ DK E++ L + + DLW +DLDA
Sbjct: 1226 TADEDAGARDYDYLLGLPIWSLTQERVDKLNKQMYDKKDEIDTLDRLSEKDLWCEDLDAF 1285
>gi|10121863|gb|AAG13404.1|AF285158_1 topoisomerase II alpha-3 [Homo sapiens]
Length = 536
Score = 585 bits (1507), Expect = e-163, Method: Compositional matrix adjust.
Identities = 307/571 (53%), Positives = 366/571 (64%), Gaps = 143/571 (25%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 27 RLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIF 85
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 86 DEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIF--- 142
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 143 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ EYKK FKQ W DNM + E+K + +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE G+ +K+I+E VN RWEV
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVC 300
Query: 328 IAPSDRGFQQVSFVNSIATT------------------------------------KGGR 351
+ S++GFQQ+SFVNSIAT+ KGGR
Sbjct: 301 LTMSEKGFQQISFVNSIATSKSSKYWSSRKSKQHILLNFFVLFKFINDAFFGICPFKGGR 360
Query: 352 HVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGM 411
HVD V D IV ++++VVKKKNK GG+
Sbjct: 361 HVDYVADQIVTKLVDVVKKKNK-----------------------------------GGV 385
Query: 412 ALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC----------------- 454
A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ SFGSTC
Sbjct: 386 AVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPKSFGSTCQLSEKFIKAAIGCGIVE 445
Query: 455 ----------------------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLA 486
+PKL+DANDAG +NS +CTLILTEGDSAK+LA
Sbjct: 446 SILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDANDAGGRNSTECTLILTEGDSAKTLA 505
Query: 487 VSGLGVVGRDKYGVFPLRGKLLNVREATHKQ 517
VSGLGVVGRDKYGVFPLRGK+LNVREA+HKQ
Sbjct: 506 VSGLGVVGRDKYGVFPLRGKILNVREASHKQ 536
>gi|412986492|emb|CCO14918.1| DNA topoisomerase II [Bathycoccus prasinos]
Length = 1444
Score = 585 bits (1507), Expect = e-163, Method: Compositional matrix adjust.
Identities = 315/671 (46%), Positives = 412/671 (61%), Gaps = 119/671 (17%)
Query: 9 DPDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNR 68
D +V G G + KK +++E IYQKK+QLEHILLRPDTY+GS E ET W+ +
Sbjct: 37 DGNVTAGGGGKTTKK------VAIEDIYQKKTQLEHILLRPDTYVGSCEKAEETAWVYDA 90
Query: 69 ETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGI 128
N + ++ + + PGLYKIFDEILVNA DNK RDP M +++ +++E TISV N GKGI
Sbjct: 91 AENKLVQKTVAFTPGLYKIFDEILVNATDNKVRDPTMKELRVDIDKEKGTISVMNGGKGI 150
Query: 129 PVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTG 188
PV HK+E ++VP +IFGHLLTSSNYN D E KVTG
Sbjct: 151 PVEMHKEEGVYVPELIFGHLLTSSNYN-------------------------DNEKKVTG 185
Query: 189 GRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITF 247
GRNGYGAKL NIFS +F+VET ++ +KQV+K+NMS+ P I K D++T+ITF
Sbjct: 186 GRNGYGAKLANIFSHEFIVETCDGSRERQYKQVFKNNMSEKGEPIITKCKKSDNWTRITF 245
Query: 248 TPDLTKFKMTSLDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQ 306
PD KF MT L+ D + L+++R YD+A K+ K+FLNGE++ VK+F +YV +Y Q
Sbjct: 246 KPDFEKFGMTELEDDSIALMSKRVYDSAGIIGKNTKIFLNGEQIKVKSFSEYVDMYL--Q 303
Query: 307 DEDGDPVKIIYENVNPRWEVAIAPSD-RGFQQVSFVNSIATTKGGRHVDAVVDAIVKQII 365
D + P +YE RW+V + S+ + FQQ SFVN I T KGG HV + D I +++
Sbjct: 304 DTENAPK--VYEAQGDRWQVCVTVSNTQQFQQCSFVNGICTMKGGTHVANIADGIAGELL 361
Query: 366 EVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIF 425
+ ++KK K + KN LK FQVKNH+W+F
Sbjct: 362 KKIQKKEK---------------SCKN--------------------LKSFQVKNHLWVF 386
Query: 426 INCLIVNPTFDSQTKENMTLQKGSFGS--------------------------------- 452
+N I NP FDSQTKE + + +FGS
Sbjct: 387 VNAQIENPAFDSQTKETLITKASNFGSKFSVSDKLIKQLMATPLVENIMSWAQFKQSKDL 446
Query: 453 -----------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVF 501
T +PKL+DAN+AG +NS DCTLILTEGDSAK+LAVSGL +VGRD YGVF
Sbjct: 447 KKTDGVKRLRLTGIPKLDDANNAGGRNSKDCTLILTEGDSAKALAVSGLSIVGRDNYGVF 506
Query: 502 PLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQ 561
PLRGKLLNVR+A+ Q+ N EI ++ +ILGLQ+ K Y + +KTLRYG+LMIMTDQD
Sbjct: 507 PLRGKLLNVRDASFDQVKNNVEITHIKQILGLQHGKTYDE-DSIKTLRYGKLMIMTDQDH 565
Query: 562 DGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETT 620
DGSHIKGL+INF+H ++P+LL++P FL EFITPIIKATK ++ FY+LPE+E WK
Sbjct: 566 DGSHIKGLLINFLHAHFPSLLKIPGFLLEFITPIIKATKGQQTRVFYTLPEYENWKLVNN 625
Query: 621 NWHTYKIKYYK 631
+ + IKYYK
Sbjct: 626 DGKGWAIKYYK 636
Score = 132 bits (332), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 85/122 (69%), Gaps = 5/122 (4%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP +Y+P+IP VL+NGAEGIGTGW T IPN+N R+++ N++ ++ E+P M PWY++
Sbjct: 845 KIEPTYYMPVIPTVLINGAEGIGTGWSTSIPNYNARDVISNVRAILNEEEPTQMMPWYRH 904
Query: 719 FKGEID---YCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDEV 775
FKGEI + G+ RF+ G I D+ LEITEL + WT DYK+ L+ L+ A KD+
Sbjct: 905 FKGEITEEIFKGERRFIATGSYHIRDECTLEITELPLRTWTQDYKEFLEELI--APKDKK 962
Query: 776 HP 777
P
Sbjct: 963 AP 964
Score = 50.8 bits (120), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 836 DEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWS 895
DE E +D + YDYLL M W+LT+E+ +L+ ++++K E+ +L+ DLW
Sbjct: 1114 DENDIAADESDDANASYDYLLSMPLWNLTLEKVEDLVTEKEEKEAEVALLRGTTDKDLWF 1173
Query: 896 DDLDALRE 903
DLDAL E
Sbjct: 1174 TDLDALEE 1181
>gi|7388329|sp|Q9Y8G8.1|TOP2_PENCH RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
II
gi|5441259|dbj|BAA82356.1| type II DNA topoisomerase [Aspergillus terreus]
Length = 1587
Score = 585 bits (1507), Expect = e-163, Method: Compositional matrix adjust.
Identities = 308/656 (46%), Positives = 399/656 (60%), Gaps = 119/656 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+V + YQK +QLEHI+ RPDTY+GS E T+ MW+ + E+ ME RE++YVPGLYKIFDE
Sbjct: 63 NVSEKYQKLTQLEHIIKRPDTYVGSTERTTQHMWVYSSESEGMEYREVSYVPGLYKIFDE 122
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
I+VNA DNKQ D M+ I++T+++E+ ISVWNNG+GIP+ H EKM+VP +IF
Sbjct: 123 IVVNAADNKQNDKNMDEIRVTIDRESGEISVWNNGRGIPIEMHSKEKMYVPELIF----- 177
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
GHLLTSSNY+D + KVTGGRNG+GAKLCN+FS++F +ET
Sbjct: 178 --------------------GHLLTSSNYDDTQMKVTGGRNGFGAKLCNVFSTEFTIETQ 217
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
S KK +KQ W +NM+K+ +I D+TK+TF PD KF MT +D D L+ RR
Sbjct: 218 DSRQKKKYKQTWTENMTKMGKAKITDAKGADYTKVTFKPDYAKFGMTGMDDDFEALVKRR 277
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD---RQDEDGDPV---KIIYENVNPRW 324
YD A + K V V LNG ++P++NF+ Y+++YT R+ D P +II + +PRW
Sbjct: 278 VYDLAGTAK-VAVKLNGSRIPIRNFKMYMEMYTKAIRRERGDMGPAGKNEIITCSPDPRW 336
Query: 325 EVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFG 384
EV A SD FQQVSFVNSIA T GG HV+ + D I ++ E VKKKNK+
Sbjct: 337 EVGFAVSDGAFQQVSFVNSIAITSGGTHVNYIADQICSKLAEQVKKKNKN---------- 386
Query: 385 NKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT 444
G LKP Q++NHI+IF+N LIVNP F SQTKE +T
Sbjct: 387 -------------------------GATLKPAQIRNHIFIFVNALIVNPAFTSQTKEQLT 421
Query: 445 LQKGSFGSTCV-------------------------------------------PKLEDA 461
++ FGS CV PKL DA
Sbjct: 422 TKQSQFGSKCVLEEDFYKKILKTEVMTNILHFAQQKADQMLKKTDGGRRSRMNNPKLTDA 481
Query: 462 NDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILEN 521
N AGTK CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +N
Sbjct: 482 NKAGTKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASFDQIAKN 541
Query: 522 AEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTL 581
EI N+ +GLQ+ K+YT D + LRYG LMI TDQD DGSHIKGL+INF+ +P+L
Sbjct: 542 QEIQNIKNFIGLQHKKEYT---DTRGLRYGHLMITTDQDHDGSHIKGLLINFLQAQFPSL 598
Query: 582 LRLP-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
L++P FL EFITPI+K K ++ SF+++PE+E WKEE + ++ KYYK
Sbjct: 599 LKIPEFLIEFITPIVKVWKGDPKNPTKQRSFFTMPEYEAWKEEHGHERGWEHKYYK 654
Score = 130 bits (327), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 81/115 (70%), Gaps = 1/115 (0%)
Query: 658 GRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYK 717
+IE E Y+P++PM+L+NGA+GIGTGW + PN+NP +IV+N+KRM+ GE PM+PW++
Sbjct: 862 AKIEQEVYVPVVPMILINGADGIGTGWSSSTPNYNPEDIVENLKRMMDGEPLKPMQPWFR 921
Query: 718 NFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F GE+ G RF +G I D ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 922 GFTGEVTAVGQDRFKFSGIIKETGDKEVEITELPIRTWTQDFKDKLEDIIK-AEK 975
Score = 49.7 bits (117), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
YDYLLGM WSLT ER +L ++ DK E++ L K + D+W DL+
Sbjct: 1144 YDYLLGMPIWSLTQERVEKLRRQIGDKELEIDTLIKLSKEDIWKRDLE 1191
>gi|18369820|dbj|BAB84105.1| DNA topoisomerase II [Talaromyces marneffei]
Length = 1162
Score = 584 bits (1506), Expect = e-163, Method: Compositional matrix adjust.
Identities = 313/651 (48%), Positives = 398/651 (61%), Gaps = 119/651 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +Q EHI+ RPDTYIGS+E T+ MW+ + T M RE+T+VPGLYKIFDEI+VNA
Sbjct: 22 YQKLTQYEHIIKRPDTYIGSIEKTTQQMWVYDSATESMAFREVTFVPGLYKIFDEIVVNA 81
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQ D KM+ I+IT+++E+ ISVWNNG+GIP+ H EK++VP +IFGHLLTSSNY+
Sbjct: 82 ADNKQNDEKMDEIRITIDRESGVISVWNNGRGIPIEIHSKEKIYVPELIFGHLLTSSNYD 141
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D G + KVTGGRNG+GAKLCN+FS++F +ET S
Sbjct: 142 D--------------GQM-----------KVTGGRNGFGAKLCNVFSTEFSIETCDSRQG 176
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K + Q W DNMSKV +I S DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 177 KKYHQTWTDNMSKVGKAKITSSKSDDYTKVTFKPDYQKFGMDGMDDDFEALVKRRVYDLA 236
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDED-GDPVKIIYENVNPRWEVAIA 329
+ K V V LNG ++PV+NF+ Y+++YT +R +E D +I+ + +PRWEV A
Sbjct: 237 GTAK-VAVKLNGSRIPVRNFKKYMEMYTKAIKKERGEEAVNDKSEIVTASPDPRWEVGFA 295
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ + D I ++ E VKKKNK
Sbjct: 296 VSDGSFQQVSFVNSIATTSGGSHVNYIADQICNRLAEAVKKKNKQ--------------- 340
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LK Q++NHI+IF+N LIVNP F SQTKE +T +
Sbjct: 341 --------------------GATLKASQIRNHIFIFVNALIVNPAFTSQTKEQLTTKPSQ 380
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS C+ PKL DAN AGT
Sbjct: 381 FGSKCILDDDFYKKVLKTEVMTNILHFAEKKADQLLKKTDGGRRSRMNNPKLTDANKAGT 440
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI N
Sbjct: 441 KDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQN 500
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ +GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+INF+ +P+LL++P
Sbjct: 501 IKSFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINFLQVQFPSLLKIPE 557
Query: 586 FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPIIK K + SF+++PE+E+WKEE N +++ KYYK
Sbjct: 558 FLIEFITPIIKVWKGDPKNPTKSKSFFTMPEYEQWKEENKNDLSWQHKYYK 608
Score = 137 bits (346), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 86/114 (75%), Gaps = 1/114 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE Y+P++P++L+NGA+GIGTGW + IPN+NP +IV N+KRM+ GE+P PM+PW++
Sbjct: 817 KIEPELYVPVVPLILINGADGIGTGWSSSIPNYNPEDIVANLKRMMDGEEPEPMQPWFRG 876
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F GE+ G R+ +G I L+D ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 877 FNGEVTPQGPDRYKFSGRIHELNDKEVEITELPIRTWTQDFKDKLEDIIK-AEK 929
Score = 52.0 bits (123), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 32/48 (66%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
YDYLLGM WSLT ER +LL++ DK E++ L K + ++W DLD
Sbjct: 1099 YDYLLGMAIWSLTQERVEKLLRQIGDKEVEIDELIKLSKEEIWRRDLD 1146
>gi|121700316|ref|XP_001268423.1| DNA topoisomerase II [Aspergillus clavatus NRRL 1]
gi|119396565|gb|EAW06997.1| DNA topoisomerase II [Aspergillus clavatus NRRL 1]
Length = 1735
Score = 584 bits (1506), Expect = e-163, Method: Compositional matrix adjust.
Identities = 309/661 (46%), Positives = 400/661 (60%), Gaps = 119/661 (18%)
Query: 26 PANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLY 85
PA + + YQK +QLEHI+ RPDTYIGSVE T+ MW+ + T ME RE++YVPGLY
Sbjct: 120 PAKSTNASEKYQKLTQLEHIIKRPDTYIGSVERTTQHMWVYSSTTEGMEYREVSYVPGLY 179
Query: 86 KIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIF 145
KIFDEI+VNA DNKQ D KM+ I++TV++E+ ISVWNNG+GIP+ H E ++VP +IF
Sbjct: 180 KIFDEIVVNAADNKQNDAKMDEIRVTVDRESGEISVWNNGRGIPIEIHSKEGIYVPELIF 239
Query: 146 GHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF 205
GHLLTSSNY +D + KVTGGRNG+GAKLCN+FS++F
Sbjct: 240 GHLLTSSNY-------------------------DDTQQKVTGGRNGFGAKLCNVFSTEF 274
Query: 206 VVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVD 265
+ET S KK +KQ W NMSK+ +I DD+TK+TF PD +F M +D D
Sbjct: 275 TIETQDSRQKKKYKQTWTSNMSKMGKAKITDAKGDDYTKVTFKPDYARFGMDGMDDDFEA 334
Query: 266 LITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDED-GDPVKIIYEN 319
L+ RR YD A + K V V LNG ++P++NF+ Y+++YT +R +ED G +II +
Sbjct: 335 LVKRRVYDLAGTAK-VAVKLNGSRVPIRNFKKYMEMYTKAIRRERGEEDAGAKDEIITCS 393
Query: 320 VNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTI 379
+P WEV SD F QVSFVNSIATT GG HV+ + D I ++ + VKKKNK+
Sbjct: 394 PDPHWEVGFTVSDGSFHQVSFVNSIATTSGGTHVNYIADQICVKLADQVKKKNKN----- 448
Query: 380 IMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQT 439
G LKP Q++NHI+IF+N LIVNP F SQT
Sbjct: 449 ------------------------------GATLKPAQIRNHIFIFVNALIVNPAFTSQT 478
Query: 440 KENMTLQKGSFGSTCV-------------------------------------------P 456
KE +T + FGS CV P
Sbjct: 479 KEQLTTKSSQFGSKCVLEEDFYKKILKTEVMNNILHFAQAKADQMLKKTDGGRRTRMNNP 538
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL DAN AGTK+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ +
Sbjct: 539 KLVDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASFE 598
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI +N EI N+ +GLQ+ K+Y D + LRYG LMIMTDQD DGSHIKGL+INF+
Sbjct: 599 QISKNQEIQNIKNFMGLQHKKEYI---DTRGLRYGHLMIMTDQDHDGSHIKGLLINFLQA 655
Query: 577 NWPTLLRLP-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYY 630
+P+LL++P FL EFITPIIK K ++ SF+++PE+E WKE+ + ++ KYY
Sbjct: 656 QFPSLLKIPEFLIEFITPIIKVWKGDPKNPTKQRSFFTMPEYEAWKEQHGHERGWEHKYY 715
Query: 631 K 631
K
Sbjct: 716 K 716
Score = 133 bits (334), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 80/109 (73%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE Y+P++P++L+NGA+GIGTGW + IPN+NP +IVDN+KR++ GE PM+PW++
Sbjct: 925 QIEPENYVPVVPLLLINGADGIGTGWSSSIPNYNPEDIVDNLKRLMDGEPIKPMQPWFRG 984
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
F GE+ G RF +G I D ++EITEL + WT D+KD L+ ++
Sbjct: 985 FNGEVTAIGGDRFKFSGIIKEAGDKEVEITELPIRTWTQDFKDKLEEII 1033
Score = 51.2 bits (121), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
YDYLLGM+ WSLT ER +L ++ ++ E++ L K + D+W DLD
Sbjct: 1208 YDYLLGMSLWSLTQERVEKLRRQIGEREVEIDALIKLSKEDIWKHDLDVF 1257
>gi|6094496|sp|O24308.1|TOP2_PEA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
II; AltName: Full=PsTopII
gi|2330651|emb|CAA74891.1| topoisomerase II [Pisum sativum]
Length = 1462
Score = 583 bits (1504), Expect = e-163, Method: Compositional matrix adjust.
Identities = 317/650 (48%), Positives = 406/650 (62%), Gaps = 115/650 (17%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E++YQKK+QLEHILLRPDTY+GS+E T+ +W+ E + M R ++YVPGLYKIFDE
Sbjct: 18 TIEEMYQKKTQLEHILLRPDTYVGSIEKHTQNLWVY--ENDEMVHRAVSYVPGLYKIFDE 75
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNKQRDP M+ +K+T++ E NT+SV+NNG G+PV H++EK++VP +IF
Sbjct: 76 ILVNAADNKQRDPSMDSLKVTIDPEANTVSVYNNGDGVPVEIHQEEKVYVPELIF----- 130
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
GHLLTSSNY+D K TGGRNGYGAKL NIFS++F++ET+
Sbjct: 131 --------------------GHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETA 170
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
K +KQV+ +NM P I K + +++TK+TF PDL KFKM L++D+V L+ +
Sbjct: 171 DGRRLKKYKQVFSNNMGTKCEPVITKCKASENWTKVTFKPDLEKFKMAYLEEDVVALMKK 230
Query: 270 RAYDAAAS-TKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGD-PVKIIYENVNPRWEVA 327
R D A K VKV LNG + K+F+DY L+ ++ P+ I+ V RWE+
Sbjct: 231 RVLDMAGCFGKTVKVELNGTLIRFKSFRDYADLFLKCAEKSKPMPLPRIHAKVGDRWEIC 290
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
I+ SD FQQVSFVNSIAT KGG HVD + + I I+ V KK KD
Sbjct: 291 ISLSDGQFQQVSFVNSIATIKGGTHVDYITNQITTYIMNKVNKKKKDAN----------- 339
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
+K VKNH+W+F+N LI NP FDSQTKE +T ++
Sbjct: 340 -------------------------VKAHTVKNHLWVFVNSLIDNPAFDSQTKETLTTRQ 374
Query: 448 GSFGSTC-VP------------------------------------------KLEDANDA 464
SFGS C VP K EDAN+A
Sbjct: 375 ASFGSKCDVPESMLKDVEKSGIVDTLLSWADFKQSKDLKKTDGTKTQRLRGCKAEDANEA 434
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
G +NS CTLILTEGDSAK+LA++GL VVGRD YGVFPLRGKLLNVREA+ KQI++N EI
Sbjct: 435 GGRNSEKCTLILTEGDSAKALAMAGLSVVGRDHYGVFPLRGKLLNVREASSKQIMDNEEI 494
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
N+ KILGLQ +K+YT V K+LRYG LMIM DQD DGSHIKGL+INFIH WP+LL++
Sbjct: 495 QNIKKILGLQQNKEYTNV---KSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPSLLKV 551
Query: 585 P-FLEEFITPIIKATKAREEL-SFYSLPEFEEWKEETTNWHT-YKIKYYK 631
P FL EF TP+I+A+ + + SFYS+PE+E WKE N T +KIKYYK
Sbjct: 552 PSFLVEFTTPVIRASHPNKTITSFYSMPEYEAWKERLGNSATSWKIKYYK 601
Score = 143 bits (361), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 83/112 (74%), Gaps = 1/112 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY+PIIP+VLVNG+EGIGTGW + IPN+NPREI+ N++R++ GE+ +PM PWYK F
Sbjct: 792 IEPNWYMPIIPLVLVNGSEGIGTGWSSYIPNYNPREIIANVRRLLNGEELVPMDPWYKGF 851
Query: 720 KGEIDYCG-DSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGA 770
+G I+ + ++VNG + +D+ ITEL + KWT DYK L+++ GA
Sbjct: 852 RGTIEKSAKEGGYIVNGTVTEIDEQTFRITELPIRKWTQDYKQFLESITDGA 903
>gi|317030635|ref|XP_001392968.2| DNA topoisomerase 2 [Aspergillus niger CBS 513.88]
Length = 1707
Score = 583 bits (1504), Expect = e-163, Method: Compositional matrix adjust.
Identities = 309/661 (46%), Positives = 400/661 (60%), Gaps = 119/661 (18%)
Query: 26 PANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLY 85
P + + YQK +QLEHI+ RPDTYIGSVE T+ MW+ + E++ ME RE++YVPGLY
Sbjct: 126 PGKSNNASEKYQKLTQLEHIIKRPDTYIGSVERTTQQMWVYSSESDGMEYREVSYVPGLY 185
Query: 86 KIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIF 145
KIFDEI+VNA DNKQ D M+ I++TV++E+ ISVWNNG+GIP+ H EK++VP +IF
Sbjct: 186 KIFDEIVVNAADNKQNDENMSEIRVTVDRESGVISVWNNGRGIPIEMHAKEKIYVPELIF 245
Query: 146 GHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF 205
GHLLTSSNY +D + KVTGGRNG+GAKLCN+FS++F
Sbjct: 246 GHLLTSSNY-------------------------DDTQQKVTGGRNGFGAKLCNVFSTEF 280
Query: 206 VVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVD 265
+ET S KK ++Q W +NM+K+ +I +D+TK+TF PD KF M +D D
Sbjct: 281 SIETQDSSQKKKYRQTWTENMTKIGKAKITEAKGEDYTKVTFKPDYAKFGMDGMDDDFEA 340
Query: 266 LITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR-QDEDGD--PV---KIIYEN 319
L+ RR YD A + K V V LNG ++P++ F+ Y+++YT + E GD P +II +
Sbjct: 341 LVKRRVYDLAGTAK-VNVKLNGTRIPIRGFKKYMEMYTKAIRKERGDTGPAPKDEIITCS 399
Query: 320 VNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTI 379
+PRWEV A SD FQQVSFVNSIATT GG HV+ + D I ++ E VKKKNK+
Sbjct: 400 PDPRWEVGFAVSDGAFQQVSFVNSIATTSGGTHVNYIADQICNRLAEQVKKKNKN----- 454
Query: 380 IMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQT 439
G LK Q++NHI+IF+N LIVNP F SQT
Sbjct: 455 ------------------------------GATLKTAQIRNHIFIFVNALIVNPAFTSQT 484
Query: 440 KENMTLQKGSFGSTCV-------------------------------------------P 456
KE +T + FGS CV P
Sbjct: 485 KEQLTTKASQFGSKCVLDEDFYKKILKTAVMENILHFAQQKADQMLKKTDGGRRSRMNNP 544
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL DAN AGTK+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+
Sbjct: 545 KLTDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASFD 604
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI +N EI N+ LGLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+INF+
Sbjct: 605 QISKNQEIQNIKNFLGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINFLQA 661
Query: 577 NWPTLLRLP-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYY 630
+P+LL++P FL EFITPI+K K ++ SF+++PE+E W EE + + KYY
Sbjct: 662 QFPSLLKIPEFLIEFITPIVKVWKGDPKNPTKQRSFFTMPEYEAWAEEHQHERGWDHKYY 721
Query: 631 K 631
K
Sbjct: 722 K 722
Score = 134 bits (336), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 83/113 (73%), Gaps = 1/113 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++PM+L+NGA+GIGTGW + IPN+NP ++VDN+KR++ GE+ PM+PW++ F
Sbjct: 932 IEPEVYMPVVPMILINGADGIGTGWSSSIPNYNPEDVVDNLKRLMNGEEIKPMQPWFRGF 991
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
GE+ G RF +G I + ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 992 TGEVTSIGGDRFKFSGIIKETGEKEVEITELPIRTWTQDFKDKLEDIIK-AEK 1043
Score = 52.4 bits (124), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
YDYLLGM WSLT ER L ++ DK E++ L K + D+W DLD
Sbjct: 1214 YDYLLGMAIWSLTQERVERLRRQIGDKEMEIDTLIKLSKEDIWKRDLD 1261
>gi|225678456|gb|EEH16740.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb03]
Length = 1788
Score = 583 bits (1503), Expect = e-163, Method: Compositional matrix adjust.
Identities = 311/651 (47%), Positives = 394/651 (60%), Gaps = 119/651 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHI+ RPDTYIGS+E T MW+ N E+ ME RE++YVPGLYKIFDEILVNA
Sbjct: 142 YQKLTQLEHIIKRPDTYIGSIERSTSQMWVYNSESEAMEYREVSYVPGLYKIFDEILVNA 201
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK D M+ I++T+N+E+ ISVWNNG+GIP+ H EK+++P +IFGHLLTSSNYN
Sbjct: 202 ADNKHNDKNMDEIRVTLNRESGEISVWNNGRGIPIEIHAKEKLYIPELIFGHLLTSSNYN 261
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D + KVTGGRNGYGAKLCNIFS++F +ET+ S
Sbjct: 262 -------------------------DMQQKVTGGRNGYGAKLCNIFSTEFTIETADSRQN 296
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K +KQ W +NMSK+ +I D+TK+TFTPD KF M +D D L+ RR YD A
Sbjct: 297 KKYKQTWTNNMSKMGKAKITDCKGQDYTKVTFTPDFKKFGMEGVDDDFEALVKRRVYDMA 356
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDG-DPVKIIYENVNPRWEVAIA 329
+ K V V LNG ++PV+NF+ Y+ +YT +R +E D +I+ +N +PRWEV A
Sbjct: 357 GTCK-VIVKLNGSRIPVRNFKQYMAMYTNAIKKERGEEAAKDKTEILLDNPDPRWEVGFA 415
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+AV D I ++ E VKK+NK
Sbjct: 416 VSDGSFQQVSFVNSIATTSGGSHVNAVADQICNRLAETVKKRNK---------------- 459
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G +LKP Q++NHI++F+N IVNP F SQTKE +T +
Sbjct: 460 -------------------TGASLKPAQIRNHIFVFVNSQIVNPAFTSQTKEQLTTKPSQ 500
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS V PKL DAN AGT
Sbjct: 501 FGSKIVLSEEFLKKVIKTQVMENIMHFAEKKADQILKKSDGNRRSRMNNPKLTDANKAGT 560
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K CTLILTEGDSAK LA++G +VG D +GVFPLRGK+LNVR+A+ QI +NAEI N
Sbjct: 561 KEGHHCTLILTEGDSAKGLAMAGRAIVGPDLFGVFPLRGKMLNVRDASVDQISKNAEIQN 620
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ LGLQ+ K+YT D K LRYG LMIMTDQD DGSHIKGL+INF+ +P+LL++P
Sbjct: 621 IKNFLGLQHKKEYT---DTKGLRYGHLMIMTDQDHDGSHIKGLLINFLQVAFPSLLKIPQ 677
Query: 586 FLEEFITPIIKATKAREE-----LSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K + SF+++ E+E WKE + ++ KYYK
Sbjct: 678 FLIEFITPIVKVWKGDPKNPIISKSFFTMQEYETWKEIHGHDRRWEKKYYK 728
Score = 130 bits (326), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 84/113 (74%), Gaps = 1/113 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P+VL+NGA+GIGTGW T IPN+NP +IV N+K ++ GE +PM+PW++ F
Sbjct: 938 IEPEIYVPVVPLVLINGADGIGTGWSTSIPNYNPEDIVANLKCLMDGEPLVPMQPWFRGF 997
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
GE+ G R+ +G I+ + ++++EITEL + WT D+KD L+ ++ AEK
Sbjct: 998 TGEVVSLGGERYKFSGRISQVGENEVEITELPIRCWTQDFKDRLEEIIK-AEK 1049
Score = 49.7 bits (117), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 90/214 (42%), Gaps = 36/214 (16%)
Query: 811 NELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNE 870
++ AK +T P +E +D+E S + + E YDYL M WSLT ER +
Sbjct: 1189 SDAAKSGETAPVVEE--------DDNEEKSDSDDAELGADSYDYLFAMPLWSLTQERVEK 1240
Query: 871 LLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCPGGNR-------TRGLALKR 923
L ++ +K E++ L K + D+W DLD + K G R R ++ K
Sbjct: 1241 LRRQIGEKEIEVDNLIKLSKEDIWRKDLDDFIAEWKFQLEDEGRRRAKSAKSVRRVSSKL 1300
Query: 924 QTRYQPSNRVLTSRDEPMVVSSGEDAP---PPTKASPVKKKKPAAK------RPAPKSDS 974
+T + + + D+ S D P +KA+ V + KP +PAP
Sbjct: 1301 KTAVKGPKKRKAAHDD----DSDFDLPKTKKSSKATTVNRSKPQGNLLSYLSKPAPNPKP 1356
Query: 975 SDLSDSDGDSDFAS--------RKKKTAAAKKAK 1000
+ +D SD RK + AA+K A+
Sbjct: 1357 AQGVGADDASDLDEGKPERPPLRKPRAAASKAAR 1390
>gi|159484508|ref|XP_001700298.1| DNA topoisomerase II [Chlamydomonas reinhardtii]
gi|158272465|gb|EDO98265.1| DNA topoisomerase II [Chlamydomonas reinhardtii]
Length = 1167
Score = 583 bits (1503), Expect = e-163, Method: Compositional matrix adjust.
Identities = 320/662 (48%), Positives = 409/662 (61%), Gaps = 102/662 (15%)
Query: 18 GPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERRE 77
GPS A S+E++YQKK+QLEHI+LRPDTYIGS E +W+ + ME ++
Sbjct: 5 GPSNAAAPAAGGKSIEEMYQKKTQLEHIILRPDTYIGSTERQPNHVWVHTGQK--MEYKQ 62
Query: 78 ITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEK 137
++Y PGLYKIFDEILVNA DNK RD M+ IK+ ++ TN+I VWNNGKGIPV HK+E
Sbjct: 63 VSYPPGLYKIFDEILVNAADNKVRDATMDTIKVDIDAATNSIRVWNNGKGIPVDVHKEEG 122
Query: 138 MFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKL 197
++VP +IFGHLLTSSNYND E K V + + ++TGGRNGYGAKL
Sbjct: 123 VYVPELIFGHLLTSSNYNDSEKKALTVHTNIPYA----------PPPQITGGRNGYGAKL 172
Query: 198 CNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIK-SGSKDDFTKITFTPDLTKFKM 256
NIFS++F++ET K +KQ + NM +P+I + D++T ITF PDL +F M
Sbjct: 173 ANIFSTEFIIETCDGSRLKRYKQTFTKNMQVKGTPKITDCKASDNWTSITFKPDLARFGM 232
Query: 257 TSLDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKI 315
+LD+D+V L+ RR YD A K KV+ NGE+L +K+FQ+YV +Y + + V
Sbjct: 233 EALDEDVVSLLRRRVYDMAGVLGKGAKVYYNGERLSIKSFQEYVDMYLGPK----NGVPR 288
Query: 316 IYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDL 375
E +N RWEV I+ +D FQQVSFVNSI+T KGG HVD +V+ +VK E + KK
Sbjct: 289 FCERINDRWEVCISITDGSFQQVSFVNSISTQKGGTHVDYIVNQVVKHATEKLSKKT--- 345
Query: 376 GCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTF 435
KT A+KP VKNH+W+F+NC + NP F
Sbjct: 346 ----------------------TKT----------AAIKPAMVKNHLWVFLNCYVENPAF 373
Query: 436 DSQTKENMTLQKGSFGSTC----------------------------------------- 454
DSQTKE +TL+ +FGS C
Sbjct: 374 DSQTKETLTLRATAFGSKCELPVPLLDKVLKAGLSDSIIRFAEFKSQKELKKGDGTKRSR 433
Query: 455 ---VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVR 511
+ KL+DANDAG S +CTLILTEGDSAK+LA+SGLGVVGRD YGVFPLRGKLLNVR
Sbjct: 434 LHGITKLDDANDAGGPRSRECTLILTEGDSAKALAISGLGVVGRDHYGVFPLRGKLLNVR 493
Query: 512 EATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLII 571
EA+ QI NAEI N+ +I+GLQ+ K Y E+ +LRYG LMIMTDQD DGSHIKGLI+
Sbjct: 494 EASAAQIAANAEIQNIKQIMGLQHGKVY---ENTTSLRYGHLMIMTDQDHDGSHIKGLIM 550
Query: 572 NFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHT-YKIKY 629
NF+H +P+LLR+P FL EFITPI+KA + R+ FY++PE+E WKE N T + IKY
Sbjct: 551 NFLHSFFPSLLRIPGFLLEFITPIVKARRGRDTKVFYTMPEYEAWKESLGNATTAWDIKY 610
Query: 630 YK 631
YK
Sbjct: 611 YK 612
Score = 133 bits (334), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 80/118 (67%), Gaps = 5/118 (4%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+PI+P VL+NGA+GIGTGW T IPN+NPR+I+ N++R++ GE M PWY+ F
Sbjct: 822 IEPEWYMPILPTVLINGADGIGTGWSTTIPNYNPRDIMANLRRLLEGEAQEAMHPWYRGF 881
Query: 720 KGEIDYC-----GDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G I G +VV+G + + +EITEL + KWT DYK+ L+TLL EK
Sbjct: 882 NGNIAEAATHKSGSRSYVVSGTVTQTGPNTIEITELPIRKWTQDYKEFLETLLRPTEK 939
>gi|240280878|gb|EER44382.1| DNA topoisomerase 2 [Ajellomyces capsulatus H143]
Length = 1737
Score = 583 bits (1503), Expect = e-163, Method: Compositional matrix adjust.
Identities = 305/651 (46%), Positives = 396/651 (60%), Gaps = 119/651 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHI+ RPDTYIGS+E T MW+ N ++ ME RE++YVPGLYKIFDEILVNA
Sbjct: 138 YQKLTQLEHIIKRPDTYIGSIERSTNQMWVYNMQSGSMEFREVSYVPGLYKIFDEILVNA 197
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK D M+ I++T+++E+ ISVWNNG+GIP+ H EK+++P ++FGHLL+SSNY
Sbjct: 198 ADNKHNDKNMDEIRVTLDRESGEISVWNNGRGIPIEIHAKEKVYIPELVFGHLLSSSNY- 256
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
+D + KVTGGRNGYGAKLCNIFS++F +ET+ S+ K
Sbjct: 257 ------------------------DDNQQKVTGGRNGYGAKLCNIFSTEFTLETADSKLK 292
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K +KQ W DNMSK+ P+I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 293 KKYKQTWTDNMSKMGKPKITDCKGDDYTKVTFIPDFKKFGMDGIDDDFEALVKRRVYDLA 352
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDR------QDEDGDPVKIIYENVNPRWEVAIA 329
+ K V V LNG ++P++NF+ Y+++YT+ ++ D +II +N +PRWE+ A
Sbjct: 353 GTCK-VTVKLNGSRIPIRNFKQYMQMYTNAIKKERGEEASKDKSEIITDNPDPRWEIGFA 411
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV++V D I +++E VKKKNK
Sbjct: 412 VSDGSFQQVSFVNSIATTSGGSHVNSVADQICNKLVEAVKKKNKT--------------- 456
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LKP Q++NHI++F+N IVNP F SQTKE +T +
Sbjct: 457 --------------------GATLKPAQIRNHIFVFVNAQIVNPAFTSQTKEQLTTKPSQ 496
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS CV PKL DAN AGT
Sbjct: 497 FGSKCVLSDEFLKKILKTQVMENILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAGT 556
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K CTLILTEGDSAK LA++G +VG D +GVFPLRGKLLNVR+A+ QI +NAEI N
Sbjct: 557 KEGHHCTLILTEGDSAKGLAMAGRAIVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQN 616
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ LGLQ+ K+YT D K LRYG LMIMTDQD DGSHIKGL+INF +P+LL++P
Sbjct: 617 IKNFLGLQHKKEYT---DTKGLRYGHLMIMTDQDHDGSHIKGLLINFFQVAFPSLLKIPQ 673
Query: 586 FLEEFITPIIKATKAREE-----LSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K + F+++ E++ W+E + ++ KYYK
Sbjct: 674 FLIEFITPIVKVWKGDPKNPTISKVFFTMQEYKTWQEIHGHDKRWEKKYYK 724
Score = 139 bits (349), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 84/113 (74%), Gaps = 1/113 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y P++PM+L+NGAEGIGTGW T IPN+NP EIV N+KR++ GE +PM+PW++ F
Sbjct: 934 IEPEIYFPVVPMILINGAEGIGTGWSTSIPNYNPEEIVANLKRLMAGEPLVPMEPWFRGF 993
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
GE+ G R+ +G I+ + D+++EITEL + WT D+KD L+ ++ AEK
Sbjct: 994 TGEVVSMGGERYKFSGRISQIGDNEVEITELPIRSWTQDFKDRLEEIIK-AEK 1045
Score = 54.7 bits (130), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 33/48 (68%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
YDYLLGM WSLT ER +L ++ DK TE++ L K + D+W+ DLD
Sbjct: 1215 YDYLLGMPLWSLTKERVEKLRRQIGDKETEIDTLIKLSKEDIWTADLD 1262
>gi|156063624|ref|XP_001597734.1| hypothetical protein SS1G_01930 [Sclerotinia sclerotiorum 1980]
gi|154697264|gb|EDN97002.1| hypothetical protein SS1G_01930 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1846
Score = 583 bits (1502), Expect = e-163, Method: Compositional matrix adjust.
Identities = 317/670 (47%), Positives = 398/670 (59%), Gaps = 126/670 (18%)
Query: 19 PSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREI 78
P PKK K S E+ YQK +QLEHI+ RPDTYIGSVE +TMW+ N ET ME R++
Sbjct: 144 PKPKK----TKTSTEQ-YQKLTQLEHIIKRPDTYIGSVEKTEQTMWVFNSETKEMELRKV 198
Query: 79 TYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKM 138
T+VPGLYKIFDEI+VNA DNKQ DP M +K+ V++E ISV N+G+GIPV H+ EK+
Sbjct: 199 TFVPGLYKIFDEIMVNAADNKQNDPNMKNLKVVVDREKGEISVENDGRGIPVEIHEKEKI 258
Query: 139 FVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLC 198
++P MIFGHLLT SNY +D+E K TGGRNGYGAKLC
Sbjct: 259 YIPEMIFGHLLTGSNY-------------------------DDDEAKTTGGRNGYGAKLC 293
Query: 199 NIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTS 258
NIFS++F +ET S K +KQ W DNMSK+ +I S DFT++TFTPD KFKMT
Sbjct: 294 NIFSTEFTLETQDSNSGKRYKQTWADNMSKMGKAKISSSKNADFTRVTFTPDWKKFKMTG 353
Query: 259 LDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDGDPV 313
+D D ++ RR YD A K VKV+LNG ++ + +F+ Y+++Y +R ED
Sbjct: 354 IDDDFEAMVKRRVYDMAGVVKGVKVYLNGTQIKL-DFKKYIEMYAKAINKERGSEDTSAN 412
Query: 314 KIIYENV--NPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK 371
+I E+ +P+WEV A SD FQQVSFVNSIATT GG HV+ + D I +++EVVKK+
Sbjct: 413 TVIVEDSKGHPKWEVGFAVSDGSFQQVSFVNSIATTSGGTHVNYIADQICDKLLEVVKKR 472
Query: 372 NKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIV 431
N G LK QV+NHI++F+NCLI
Sbjct: 473 NPK-----------------------------------GALLKANQVRNHIFLFVNCLIT 497
Query: 432 NPTFDSQTKENMTLQKGSFGSTCV------------------------------------ 455
NP F SQTKE +T +K FGS C
Sbjct: 498 NPAFTSQTKEQLTTRKPQFGSKCTLTEEFLKKIGKTEAVENILNFAAKKADLELAKSDGN 557
Query: 456 -------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLL 508
PKL DAN AGTK +CTLILTEGDSAK LAV+G V+ D+ GVFPLRGKLL
Sbjct: 558 RRSRMNNPKLVDANLAGTKRGHECTLILTEGDSAKGLAVAGRAVLDPDRIGVFPLRGKLL 617
Query: 509 NVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKG 568
NVR+A+H QI +NAEI N+ + LGL++ T +D LRYG LMIM DQD DGSHIKG
Sbjct: 618 NVRDASHDQIAKNAEIQNIKQFLGLKHK---TVYKDTLGLRYGHLMIMADQDHDGSHIKG 674
Query: 569 LIINFIHHNWPTLLRLP-FLEEFITPIIKA------TKAREELSFYSLPEFEEWKEETTN 621
L+INF+ +P+LL+LP F EFITPI+K K SF+++PE+EEWKE N
Sbjct: 675 LLINFLQVQYPSLLKLPEFFREFITPIVKVWKGPNPNKPTNLRSFFTIPEYEEWKEAHAN 734
Query: 622 WHTYKIKYYK 631
+K KYYK
Sbjct: 735 DKGWKHKYYK 744
Score = 109 bits (272), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 80/123 (65%), Gaps = 9/123 (7%)
Query: 658 GR-IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIK-RMIRGED-----PL 710
GR IEP Y P++PMVL+NGA+GIGTGW T IPN++P EIV+N+K RM R +D P
Sbjct: 951 GRSIEPVTYFPVVPMVLINGADGIGTGWSTNIPNYHPVEIVNNLKRRMGRLDDSGEEKPF 1010
Query: 711 -PMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHG 769
M PW++ +KG + G R+ NG I D ++EITEL + WT D+K L+ ++
Sbjct: 1011 ETMMPWFRGWKGTAEPAGPDRYKFNGIIRETGDTEVEITELPIRMWTDDFKAKLEEIIK- 1069
Query: 770 AEK 772
AEK
Sbjct: 1070 AEK 1072
Score = 64.7 bits (156), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 56/90 (62%), Gaps = 9/90 (10%)
Query: 812 ELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNEL 871
++++ +K G + E + G D++AG+ +D+DYLLG+ WSLT ER ++L
Sbjct: 1210 KVSEAKKAGETDDVVENEEEVGIDEDAGA---------RDFDYLLGLPIWSLTQERVDKL 1260
Query: 872 LKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
K++DDK E++ L++ + DLW +DLDA
Sbjct: 1261 NKQKDDKKDEIDTLERLSEKDLWCEDLDAF 1290
>gi|258569355|ref|XP_002543481.1| DNA topoisomerase 2 [Uncinocarpus reesii 1704]
gi|237903751|gb|EEP78152.1| DNA topoisomerase 2 [Uncinocarpus reesii 1704]
Length = 1704
Score = 582 bits (1501), Expect = e-163, Method: Compositional matrix adjust.
Identities = 311/651 (47%), Positives = 392/651 (60%), Gaps = 119/651 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +Q EHI+ RPDTYIGSVE + MW+ N T ME RE++YVPGLYKIFDEILVNA
Sbjct: 132 YQKLTQKEHIIRRPDTYIGSVERTQQQMWVFNSTTEQMEFREVSYVPGLYKIFDEILVNA 191
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQRD M+ I++T+++E ISVWNNG+GIPV H EK+++P +IFGHLLTSSNY
Sbjct: 192 ADNKQRDSSMSEIRVTLDKEAGEISVWNNGRGIPVEIHSKEKIYIPELIFGHLLTSSNY- 250
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
+D++ KVTGGRNGYGAKLCNIFS++F VET+ S K
Sbjct: 251 ------------------------DDDQAKVTGGRNGYGAKLCNIFSTEFTVETADSNSK 286
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K +KQ WKDNMS + +I DD+TKITF PD KF M +D D L+ RR YD A
Sbjct: 287 KKYKQTWKDNMSVMGKAKIADVKGDDYTKITFKPDFMKFGMEGMDDDFEALVKRRVYDLA 346
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDE-DGDPVKIIYENVNPRWEVAIA 329
+ K V V LNG K+ ++ F+ Y+++YT +R +E D +I+ ++ +PRWE+ A
Sbjct: 347 GTCK-VNVKLNGTKIALRGFKKYMEMYTKAIKNERGEEATSDKSEIVTDSPDPRWEIGFA 405
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ + D I ++ E VKKKNK
Sbjct: 406 VSDGSFQQVSFVNSIATTSGGTHVNYISDQICAKLAESVKKKNKT--------------- 450
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LKP Q++NHI++F+NCLIVNP F SQTKE +T +
Sbjct: 451 --------------------GPLLKPAQIRNHIFLFVNCLIVNPAFTSQTKEQLTTKPSQ 490
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS C PKL DAN AGT
Sbjct: 491 FGSKCTLSEDFLKKILKTQVMQNIMHFAEQKADQILKKTDGSRRARMNNPKLTDANKAGT 550
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +N EI N
Sbjct: 551 KEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNQEIQN 610
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ LGLQ+ K+Y D + LRYG LMIMTDQD DGSHIKGL+IN++ +P+LL++P
Sbjct: 611 IKNFLGLQHKKEYA---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPSLLKIPG 667
Query: 586 FLEEFITPIIKATKAREEL-----SFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K + SF+++PE+E WKE + + KYYK
Sbjct: 668 FLIEFITPIVKVWKGDPKQPTATKSFFTIPEYEAWKEVHGHDRRWDKKYYK 718
Score = 111 bits (277), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 70/99 (70%), Gaps = 2/99 (2%)
Query: 674 VNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNFKGEIDYCGDSRFVV 733
+NGA+GIGTGW T IPN NP +IVDN+KR++ GE +PMKPW++ F GE+ GD R+
Sbjct: 942 INGADGIGTGWSTSIPNFNPEDIVDNLKRLMDGEPVVPMKPWFRGFTGEVTAAGD-RYKF 1000
Query: 734 NGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
+G I D ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 1001 SGIIKQTGDYEVEITELPIRTWTQDFKDKLEEIIK-AEK 1038
Score = 62.0 bits (149), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 67/150 (44%), Gaps = 36/150 (24%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCP 911
YDYLLGM WSLT ER +LL++ DK E++ L K + DLW DLD + +
Sbjct: 1207 YDYLLGMALWSLTQERVAKLLRQMGDKELEIDALIKLSKEDLWRRDLDEFIAEWRYQ--- 1263
Query: 912 GGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAPPPTKASPVKKKKPAAKRPAPK 971
L+ + R +R R + ++G PAAK K
Sbjct: 1264 ---------LEDEERRAKKSRSYGRRTSTKLKTAG----------------PAAK----K 1294
Query: 972 SDSSDLSDSDGDSDFASRKKKTAAAKKAKP 1001
++D GDSDFA + KKTA K KP
Sbjct: 1295 RKATD----GGDSDFAPKAKKTAIVNKVKP 1320
>gi|119473123|ref|XP_001258508.1| DNA topoisomerase II [Neosartorya fischeri NRRL 181]
gi|119406660|gb|EAW16611.1| DNA topoisomerase II [Neosartorya fischeri NRRL 181]
Length = 1735
Score = 582 bits (1500), Expect = e-163, Method: Compositional matrix adjust.
Identities = 307/661 (46%), Positives = 400/661 (60%), Gaps = 119/661 (18%)
Query: 26 PANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLY 85
PA + + YQK +QLEHI+ RPDTYIGSVE T+ MW+ + E M+ RE++YVPGLY
Sbjct: 120 PAKSTNASEKYQKLTQLEHIIKRPDTYIGSVERTTQFMWVYDSEMEGMKYREVSYVPGLY 179
Query: 86 KIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIF 145
KIFDEI+VNA DNKQ D M+ I++T+++E+ ISVWNNG+GIP+ H E ++VP +IF
Sbjct: 180 KIFDEIVVNAADNKQNDANMDEIRVTIDRESGEISVWNNGRGIPIEIHAKEGIYVPELIF 239
Query: 146 GHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF 205
GHLLTSSNY +D + KVTGGRNG+GAKLCN+FS++F
Sbjct: 240 GHLLTSSNY-------------------------DDTQQKVTGGRNGFGAKLCNVFSTEF 274
Query: 206 VVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVD 265
+ET S KK +KQ W +NMSK+ +I DD+TK+TF PD KF M +D D
Sbjct: 275 TIETQDSRQKKKYKQTWTNNMSKMGKAKITDAKGDDYTKVTFKPDYAKFGMEGMDDDFEA 334
Query: 266 LITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDGDPV-KIIYEN 319
L+ RR YD A + K V V LNG ++PV+NF+ Y+++YT +R +ED + +II +
Sbjct: 335 LVKRRVYDLAGTAK-VAVKLNGSRIPVRNFKKYMEMYTKAIRRERGEEDTNAKDEIITCS 393
Query: 320 VNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTI 379
+P WE+ SD F QVSFVNSIATT GG HV+ + D I ++ + VKKKNK+
Sbjct: 394 PDPHWEIGFTVSDGSFHQVSFVNSIATTSGGTHVNYIADQICARLADQVKKKNKN----- 448
Query: 380 IMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQT 439
G LKP Q++NHI+IF+N LIVNP F SQT
Sbjct: 449 ------------------------------GATLKPAQIRNHIFIFVNALIVNPAFTSQT 478
Query: 440 KENMTLQKGSFGSTCV-------------------------------------------P 456
KE +T + FGS C P
Sbjct: 479 KEQLTTKSSQFGSKCTLEEDFYKKILKTEVMNNILHFAQAKADQLLKKTDGGRRTRMNNP 538
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL DAN AGTK+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ +
Sbjct: 539 KLVDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASFE 598
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI +N EI N+ LGLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+INF+
Sbjct: 599 QISKNQEIQNIKNFLGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINFLQA 655
Query: 577 NWPTLLRLP-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYY 630
+P+LL++P FL EFITPI+K K ++ SF+++PE+E WKEE + ++ KYY
Sbjct: 656 QFPSLLKIPEFLIEFITPIVKVWKGDPKNPTKQRSFFTMPEYEAWKEEHKHERGWEHKYY 715
Query: 631 K 631
K
Sbjct: 716 K 716
Score = 130 bits (327), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 82/114 (71%), Gaps = 1/114 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE Y+P++P++L+NGA+GIGTGW + IPN+NP +IVDN+KR++ + PM+PW++
Sbjct: 925 KIEPEVYVPVVPLILINGADGIGTGWSSSIPNYNPEDIVDNLKRLMDSQPVKPMQPWFRG 984
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F GE+ G RF +G I D ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 985 FTGEVTALGGDRFKFSGIIKETGDKEVEITELPIRTWTQDFKDKLEEIIK-AEK 1037
Score = 53.1 bits (126), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 830 AAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKA 889
E E+DE+G+ E E YDYLLGM WSLT ER +L ++ +K E++ L K +
Sbjct: 1188 VVEEEEDESGND--ETEVLSSAYDYLLGMPLWSLTHERVEKLRRQIGEKEVEMDALIKLS 1245
Query: 890 PTDLWSDDLD 899
D+W DLD
Sbjct: 1246 KEDIWKRDLD 1255
>gi|308810347|ref|XP_003082482.1| putative DNA topoisomerase II (ISS) [Ostreococcus tauri]
gi|116060951|emb|CAL56339.1| putative DNA topoisomerase II (ISS) [Ostreococcus tauri]
Length = 1099
Score = 582 bits (1499), Expect = e-162, Method: Compositional matrix adjust.
Identities = 322/685 (47%), Positives = 418/685 (61%), Gaps = 122/685 (17%)
Query: 2 SSDESDFDPDVQQNGNG---PSPKKKTPAN---KMSVEKIYQKKSQLEHILLRPDTYIGS 55
S D+ D + V +G G + K K AN K +VE+IYQKK+QLEHILLRPDTY+GS
Sbjct: 16 SDDDFDENAPVVTHGKGEKTATAKTKPLANATNKKTVEEIYQKKTQLEHILLRPDTYVGS 75
Query: 56 VEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQE 115
E E W+ + T + R++++VPGLYKIFDEILVNA DNK RDPKM +++ ++ E
Sbjct: 76 CERAEEKAWVYDDATKSLVHRQVSFVPGLYKIFDEILVNATDNKVRDPKMKELRVDIDVE 135
Query: 116 TNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLT 175
I V+N+G GIPV HK+E ++VP +IF GHLLT
Sbjct: 136 QGIIRVYNDGNGIPVEMHKEEGVYVPELIF-------------------------GHLLT 170
Query: 176 SSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI- 234
SSNY+D E KV GGRNGYGAKL NIFS++F++ET +K ++QV+ +NMS P +
Sbjct: 171 SSNYDDNEKKVVGGRNGYGAKLANIFSTEFIIETCDGSREKRYRQVFNNNMSVKGEPVVT 230
Query: 235 KSGSKDDFTKITFTPDLTKFKMTSL-DKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPV 292
K +++T +TF PD KF M SL ++D+ L+ +R YDAA + K+ ++LNGEKL +
Sbjct: 231 KCKKSENWTCVTFKPDFAKFGMESLVNEDVAALMCKRVYDAAGNIGKNTSIYLNGEKLAI 290
Query: 293 KNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSD-RGFQQVSFVNSIATTKGGR 351
K F DYV +Y + Q I++ RW+V ++ SD + FQQ SFVN I T KGG
Sbjct: 291 KGFNDYVSMYLNSQA----TAPKIFDLSTDRWQVCVSISDSQQFQQCSFVNGICTMKGGT 346
Query: 352 HVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGM 411
HV+ V D I ++++E ++KK K KN
Sbjct: 347 HVNNVADQISQKLLEKIQKKEK---------------TCKN------------------- 372
Query: 412 ALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS------------------- 452
LK FQVKNH+W+F+N LI NP FDSQTKE + + FGS
Sbjct: 373 -LKAFQVKNHLWVFVNALIENPAFDSQTKETLITRPNKFGSSYSPSDSIIKKLMDSGVVE 431
Query: 453 -------------------------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAV 487
T +PKL+DANDAG +NS CTLILTEGDSAK+LAV
Sbjct: 432 NIMSWAQFKQSKELKKTDGAKRSRLTGIPKLDDANDAGGRNSESCTLILTEGDSAKALAV 491
Query: 488 SGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKT 547
SGL VVGRDKYGVFPLRGKLLNVR+A+H QI NAEINN+ +ILGLQ+ K+Y + K+
Sbjct: 492 SGLSVVGRDKYGVFPLRGKLLNVRDASHDQIKNNAEINNIKQILGLQHGKEY---DSAKS 548
Query: 548 LRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSF 606
LRYG+LMIMTDQD DGSHIKGL+INF+H ++P+LL++P FL EFITPIIKATK ++ F
Sbjct: 549 LRYGKLMIMTDQDHDGSHIKGLLINFLHAHFPSLLKIPGFLLEFITPIIKATKGKQSKVF 608
Query: 607 YSLPEFEEWKEETTNWHTYKIKYYK 631
Y+LPE+E WKE + IKYYK
Sbjct: 609 YTLPEYETWKEANQGSAGWSIKYYK 633
Score = 140 bits (353), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 83/119 (69%), Gaps = 3/119 (2%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEP++Y P++P+VLVNGAEGIGTGW T IPN NPR+I+ NIK ++ GE+ M PWY+N
Sbjct: 842 RIEPDFYYPVLPLVLVNGAEGIGTGWSTSIPNFNPRDIISNIKLVLEGEEARQMHPWYRN 901
Query: 719 FKGEI---DYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
F G I GDSR+ V G I D+ LEITEL + WTTDYKD L+ +L K+E
Sbjct: 902 FNGSIVEEIVKGDSRYTVTGSYIIRDECTLEITELPLRSWTTDYKDFLEDMLAPKTKNE 960
>gi|154270939|ref|XP_001536323.1| DNA topoisomerase 2 [Ajellomyces capsulatus NAm1]
gi|150409546|gb|EDN04990.1| DNA topoisomerase 2 [Ajellomyces capsulatus NAm1]
Length = 1808
Score = 581 bits (1498), Expect = e-162, Method: Compositional matrix adjust.
Identities = 306/651 (47%), Positives = 397/651 (60%), Gaps = 119/651 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHI+ RPDTYIGS+E T MW+ N ++ ME R ++YVPGLYKIFDEILVNA
Sbjct: 138 YQKLTQLEHIIKRPDTYIGSIERSTNQMWVYNMQSGSMEFRVVSYVPGLYKIFDEILVNA 197
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK D M+ I++T+++E+ ISVWNNG+GIP+ H EK+++P ++FGHLL+SSNY
Sbjct: 198 ADNKHSDKNMDEIRVTLDRESGQISVWNNGRGIPIEIHAKEKVYIPELVFGHLLSSSNY- 256
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
+D + KVTGGRNGYGAKLCNIFS++F +ET+ S+ K
Sbjct: 257 ------------------------DDNQQKVTGGRNGYGAKLCNIFSTEFTLETADSKLK 292
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K +KQ W DNMSK+ P+I DD+TK+TFTPD KF M +D D L+ RR YD A
Sbjct: 293 KKYKQTWTDNMSKMGKPKITDCKGDDYTKVTFTPDFKKFGMDGIDDDFEALVKRRVYDLA 352
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDG-DPVKIIYENVNPRWEVAIA 329
+ K V V LNG ++P++NF+ Y+++YT +R +E D +II +N +PRWE+ A
Sbjct: 353 GTCK-VTVKLNGSRIPIRNFKQYMQMYTNAIKKERGEEAAKDKSEIITDNPDPRWEIGFA 411
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV++V D I ++++ VKKKNK
Sbjct: 412 VSDGSFQQVSFVNSIATTSGGSHVNSVADQICNKLVDAVKKKNKT--------------- 456
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LKP Q++NHI++F+N IVNP F SQTKE +T +
Sbjct: 457 --------------------GATLKPAQIRNHIFVFVNAQIVNPAFTSQTKEQLTTKPSQ 496
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS CV PKL DAN AGT
Sbjct: 497 FGSKCVLSDEFLKKILKTQVMENILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAGT 556
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K CTLILTEGDSAK LA++G +VG D +GVFPLRGKLLNVR+A+ QI +NAEI N
Sbjct: 557 KEGHHCTLILTEGDSAKGLAMAGRAIVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQN 616
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ LGLQ+ K+YT D K LRYG LMIMTDQD DGSHIKGL+INF +P+LL++P
Sbjct: 617 IKNFLGLQHKKEYT---DTKGLRYGHLMIMTDQDHDGSHIKGLLINFFQVAFPSLLKIPQ 673
Query: 586 FLEEFITPIIKATKAREE-----LSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K + F+++ E++ W+E + ++ KYYK
Sbjct: 674 FLIEFITPIVKVWKGDPKNPTISKVFFTMQEYKTWQEIHGHDKRWEKKYYK 724
Score = 139 bits (349), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 84/113 (74%), Gaps = 1/113 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y P++PM+L+NGAEGIGTGW T IPN+NP EIV N+KR++ GE +PM+PW++ F
Sbjct: 934 IEPEIYFPVVPMILINGAEGIGTGWSTSIPNYNPEEIVANLKRLMAGEPLVPMEPWFRGF 993
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
GE+ G R+ +G I+ + D+++EITEL + WT D+KD L+ ++ AEK
Sbjct: 994 TGEVVSMGGERYKFSGRISQIGDNEVEITELPIRSWTQDFKDRLEEIIK-AEK 1045
Score = 54.7 bits (130), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 33/48 (68%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
YDYLLGM WSLT ER +L ++ DK TE++ L K + D+W+ DLD
Sbjct: 1215 YDYLLGMPLWSLTKERVEKLRRQIGDKETEIDTLIKLSKEDIWTADLD 1262
>gi|25006387|dbj|BAC24013.1| DNA topoisomerase II [Arthroderma otae]
Length = 1087
Score = 581 bits (1498), Expect = e-162, Method: Compositional matrix adjust.
Identities = 314/651 (48%), Positives = 390/651 (59%), Gaps = 119/651 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHIL RPDTYIGSVE + MW+ N T ME RE++YVPGLYKIFDEILVNA
Sbjct: 2 YQKITQLEHILKRPDTYIGSVERTEKQMWVYNSTTELMEYREVSYVPGLYKIFDEILVNA 61
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQ DP MN I++T+++E ISVWNNG+GIPV H EK+++P +IFGHLLTSSNYN
Sbjct: 62 ADNKQNDPNMNEIRVTLDKEGGEISVWNNGRGIPVEVHSKEKIYIPELIFGHLLTSSNYN 121
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D +++KVTGGRNGYGAKLCNIFS++F +ET+ S K
Sbjct: 122 D-------------------------QQEKVTGGRNGYGAKLCNIFSNEFTIETADSRTK 156
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K FK W +NMS + P+I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 157 KKFKLTWTNNMSAMGKPKITECKGDDYTKVTFKPDFAKFGMEGMDDDFEALVKRRVYDMA 216
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDR------QDEDGDPVKIIYENVNPRWEVAIA 329
T V LNG K+PVK+F+ Y+++YT +D D II E+ + RWE+
Sbjct: 217 G-TCGTAVKLNGTKIPVKSFKKYMEMYTKAIKTERGEDPTSDKNDIITESPDRRWEIGFT 275
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ + D I ++ + +KKKNK
Sbjct: 276 VSDGSFQQVSFVNSIATTSGGTHVNYISDQICNKLADALKKKNKT--------------- 320
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LK Q+KNHI++F+NC IVNP F SQTKE +T +
Sbjct: 321 --------------------GATLKAAQIKNHIFLFVNCQIVNPAFTSQTKEQLTTRSSQ 360
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS C+ PKL DAN AGT
Sbjct: 361 FGSKCIVSDEFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAGT 420
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI N
Sbjct: 421 KEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQN 480
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ +GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +PTLL++P
Sbjct: 481 IKNFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKIPG 537
Query: 586 FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K SF++LPE+EEWKE + ++ KYYK
Sbjct: 538 FLIEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKETHAHDKKWQKKYYK 588
Score = 134 bits (336), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 83/108 (76%), Gaps = 1/108 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P++L+NGA+GIGTGW T IPN+NP ++V N+KR++ GE+ +PMKPW++ F
Sbjct: 798 IEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVANLKRLMAGEELVPMKPWFRGF 857
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
KGE+ GD R+ +G I D+++EITEL + WT D+KD L+ ++
Sbjct: 858 KGEVTGSGD-RYKFSGIIKQTGDNEVEITELPIRTWTQDFKDRLEEII 904
>gi|300709311|ref|XP_002996821.1| hypothetical protein NCER_100008 [Nosema ceranae BRL01]
gi|239606147|gb|EEQ83150.1| hypothetical protein NCER_100008 [Nosema ceranae BRL01]
Length = 713
Score = 581 bits (1497), Expect = e-162, Method: Compositional matrix adjust.
Identities = 316/647 (48%), Positives = 411/647 (63%), Gaps = 120/647 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E+ YQKK+ LEHILLRPDTYIGSVE + M++ + + + I++VPGLYKIFDE
Sbjct: 4 TIEETYQKKTPLEHILLRPDTYIGSVEKEVQNMYIWDEANGKIVSKNISFVPGLYKIFDE 63
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
I+VNA DNK RDPKM IK+ +N+E N ISV+N+GKG+P+ H EK++VP +IF
Sbjct: 64 IIVNAADNKIRDPKMKNIKVEINKEDNIISVYNDGKGVPIKIHSQEKVYVPELIF----- 118
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFSS+FVVETS
Sbjct: 119 --------------------GQLLTSSNYDDKEKKVTGGRNGYGAKLCNIFSSEFVVETS 158
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
E K +KQV+K+NM+ PEIK+ K DFTKITF PDL +F M +LD D+V L +R
Sbjct: 159 DQEVGKIYKQVFKNNMTVTGKPEIKTYKKSDFTKITFKPDLVRFGMKNLDDDIVSLFKKR 218
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAP 330
YD + K+V V+LN +K+ +KNF+DYVKLY D V +++E +N RWE+A
Sbjct: 219 VYDLSGIVKNVNVYLNEQKIEIKNFKDYVKLYLPE-----DAV-VVHEIINERWELAFTT 272
Query: 331 SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNV 390
S+ FQQVSFVNSI+T+KGG HV+ VV+ + IIE +KKK K +NV
Sbjct: 273 SEEQFQQVSFVNSISTSKGGSHVNHVVEQLTDPIIEALKKK--------------KISNV 318
Query: 391 KNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSF 450
K PFQVK+ +++FIN LI NP FDSQTKEN+TL+ G+F
Sbjct: 319 K-----------------------PFQVKSSMFLFINSLIDNPAFDSQTKENLTLRVGAF 355
Query: 451 GSTCVP--------------------------------------------KLEDANDAGT 466
GS C P KLEDA AGT
Sbjct: 356 GSKCEPLKDFIDKVIKNTEVVTKIADFVKAKEDAALKKTDGKKKGRIIIDKLEDAKWAGT 415
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
S +CTL LTEGDSAK++ +SG +VG ++ GV+PLRGKLLNVREAT+KQI EN EI
Sbjct: 416 AKSNECTLYLTEGDSAKTMVMSGRSIVGTERLGVYPLRGKLLNVREATNKQISENVEIIA 475
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ KILGLQ++K YT D +LRYG +MI+TDQD DGSHIKGL+INF + +P+LL++P
Sbjct: 476 IKKILGLQHAKTYT---DTSSLRYGHVMIITDQDHDGSHIKGLLINFFDYWYPSLLKIPG 532
Query: 586 FLEEFITPIIKATKAREEL-SFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL+EFITPI++ +R E+ +F+++PE+ E+KE+ N Y KYYK
Sbjct: 533 FLQEFITPIVRGKNSRGEIVNFFTIPEYLEFKEQNPN---YTFKYYK 576
>gi|358058373|dbj|GAA95892.1| hypothetical protein E5Q_02550 [Mixia osmundae IAM 14324]
Length = 1497
Score = 580 bits (1495), Expect = e-162, Method: Compositional matrix adjust.
Identities = 319/699 (45%), Positives = 406/699 (58%), Gaps = 157/699 (22%)
Query: 26 PANKM--SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPG 83
P +K+ S YQK +QLEH+LLRPDTYIGSVE IT+ MW+ + + M ++ IT+VPG
Sbjct: 68 PTDKVEKSASAKYQKITQLEHVLLRPDTYIGSVESITQPMWIWDATRSCMAQKTITFVPG 127
Query: 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTM 143
L+KIFDEILVNA D KQ+ P M+ +K+ ++ E ISVWNNG GI VV H+ E +++P +
Sbjct: 128 LFKIFDEILVNAADAKQQCPSMSELKVNIDTEKGEISVWNNGMGIEVVIHEKENIYIPEL 187
Query: 144 IFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSS 203
IFGHLLTSSNY +D++ K TGGRNGYGAKL NI+S+
Sbjct: 188 IFGHLLTSSNY-------------------------DDDDKKTTGGRNGYGAKLANIYST 222
Query: 204 KFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDD-FTKITFTPDLTKFKMTS---L 259
F VET+C + K + Q W +NMS +I K + +TKITF PD +F + L
Sbjct: 223 SFTVETACQKSGKKYVQTWTNNMSSKGKAKITDTKKGEAYTKITFRPDFKRFGHMAEAGL 282
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGD-------- 311
D D L+ +R YD A + KDV+V LNG+KL V NF+ YV+LYT DE G+
Sbjct: 283 DPDTEALLQKRVYDMAGTVKDVQVSLNGKKLRVNNFKKYVELYTRAVDEQGNVPTPTKAR 342
Query: 312 ----------------------------------PVKIIYENVNPRWEVAIAPSDRGFQQ 337
P KIIYE RWEVA SD F Q
Sbjct: 343 ARSNSVVSATPALSQSQSQATDLAGAPPTGKSAQPGKIIYEQFGERWEVAFTVSDGDFNQ 402
Query: 338 VSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQM 397
VSFVNSIATTKGG HV+ V + + +I VKKK NK NVK++
Sbjct: 403 VSFVNSIATTKGGTHVEHVAKQLTEGLIAAVKKK-------------NKHANVKSS---- 445
Query: 398 AKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC--- 454
Q++ H+WIFINCL+ NP+FDSQTKEN+ L G FGS C
Sbjct: 446 -------------------QIRPHLWIFINCLVENPSFDSQTKENLILPVGKFGSRCKVS 486
Query: 455 -----------------------------------------VPKLEDANDAGTKNSIDCT 473
+ KLEDAN AGTKN +CT
Sbjct: 487 EEFIKKITKSGVVDNVLNWAKFKEEQQLKKTDGHKRSRITGISKLEDANQAGTKNGRNCT 546
Query: 474 LILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGL 533
LILTEGDSAK+LAVSGL VVGRD +GVFPLRGKLLNVRE+ K + +N EIN + +I+GL
Sbjct: 547 LILTEGDSAKALAVSGLEVVGRDTFGVFPLRGKLLNVRESQGKTLTDNIEINAVKQIMGL 606
Query: 534 QYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFIT 592
Q+ K Y +V+ +LRYG LMIMTDQD DGSHIKGLIINF+ + +P+LLR+P FL EFIT
Sbjct: 607 QHGKTYESVD---SLRYGHLMIMTDQDHDGSHIKGLIINFLDYFFPSLLRIPGFLVEFIT 663
Query: 593 PIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
PI+K ++AR+E +F+++PE+E WK E + + IKYYK
Sbjct: 664 PIVKISRARQERAFFTMPEYEAWKAENNDGRGWDIKYYK 702
Score = 124 bits (310), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP-LPMKPWYKN 718
IEP WY+P+IPMVLVNG++GIGTGW + IP +NP +I+ N++ + +D +P+ PWY+
Sbjct: 912 IEPSWYMPVIPMVLVNGSDGIGTGWSSTIPTYNPADIIANLRAKLADKDERIPLLPWYRG 971
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
+KGEI G +F G + D+D LEITEL V WT YK+ L+ + G EK
Sbjct: 972 YKGEIVRLGADKFKCLGVWSQPDEDTLEITELPVRVWTQTYKELLEAWIQGTEK 1025
Score = 60.8 bits (146), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 825 RQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNI 884
R +R A + ++D+A + + D Y+YL G+ +LT E+ +LL +RD+K ELNI
Sbjct: 1163 RGKRVAVDVDEDDAANDALDLSAAD--YEYLFGLALSTLTAEKAAKLLAQRDEKEAELNI 1220
Query: 885 LKKKAPTDLWSDDLDALR 902
L K P LW +DLDAL+
Sbjct: 1221 LLAKTPKMLWIEDLDALQ 1238
>gi|134077492|emb|CAK96636.1| unnamed protein product [Aspergillus niger]
Length = 1712
Score = 580 bits (1494), Expect = e-162, Method: Compositional matrix adjust.
Identities = 310/666 (46%), Positives = 400/666 (60%), Gaps = 124/666 (18%)
Query: 26 PANKMSVEKIYQKKS-----QLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITY 80
P + + YQK S QLEHI+ RPDTYIGSVE T+ MW+ + E++ ME RE++Y
Sbjct: 126 PGKSNNASEKYQKASISGLTQLEHIIKRPDTYIGSVERTTQQMWVYSSESDGMEYREVSY 185
Query: 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
VPGLYKIFDEI+VNA DNKQ D M+ I++TV++E+ ISVWNNG+GIP+ H EK++V
Sbjct: 186 VPGLYKIFDEIVVNAADNKQNDENMSEIRVTVDRESGVISVWNNGRGIPIEMHAKEKIYV 245
Query: 141 PTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNI 200
P +IFGHLLTSSNY +D + KVTGGRNG+GAKLCN+
Sbjct: 246 PELIFGHLLTSSNY-------------------------DDTQQKVTGGRNGFGAKLCNV 280
Query: 201 FSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLD 260
FS++F +ET S KK ++Q W +NM+K+ +I +D+TK+TF PD KF M +D
Sbjct: 281 FSTEFSIETQDSSQKKKYRQTWTENMTKIGKAKITEAKGEDYTKVTFKPDYAKFGMDGMD 340
Query: 261 KDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR-QDEDGD--PV---K 314
D L+ RR YD A + K V V LNG ++P++ F+ Y+++YT + E GD P +
Sbjct: 341 DDFEALVKRRVYDLAGTAK-VNVKLNGTRIPIRGFKKYMEMYTKAIRKERGDTGPAPKDE 399
Query: 315 IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKD 374
II + +PRWEV A SD FQQVSFVNSIATT GG HV+ + D I ++ E VKKKNK+
Sbjct: 400 IITCSPDPRWEVGFAVSDGAFQQVSFVNSIATTSGGTHVNYIADQICNRLAEQVKKKNKN 459
Query: 375 LGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPT 434
G LK Q++NHI+IF+N LIVNP
Sbjct: 460 -----------------------------------GATLKTAQIRNHIFIFVNALIVNPA 484
Query: 435 FDSQTKENMTLQKGSFGSTCV--------------------------------------- 455
F SQTKE +T + FGS CV
Sbjct: 485 FTSQTKEQLTTKASQFGSKCVLDEDFYKKILKTAVMENILHFAQQKADQMLKKTDGGRRS 544
Query: 456 ----PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVR 511
PKL DAN AGTK+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR
Sbjct: 545 RMNNPKLTDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVR 604
Query: 512 EATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLII 571
+A+ QI +N EI N+ LGLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+I
Sbjct: 605 DASFDQISKNQEIQNIKNFLGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLI 661
Query: 572 NFIHHNWPTLLRLP-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTY 625
NF+ +P+LL++P FL EFITPI+K K ++ SF+++PE+E W EE + +
Sbjct: 662 NFLQAQFPSLLKIPEFLIEFITPIVKVWKGDPKNPTKQRSFFTMPEYEAWAEEHQHERGW 721
Query: 626 KIKYYK 631
KYYK
Sbjct: 722 DHKYYK 727
Score = 134 bits (337), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 83/113 (73%), Gaps = 1/113 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++PM+L+NGA+GIGTGW + IPN+NP ++VDN+KR++ GE+ PM+PW++ F
Sbjct: 937 IEPEVYMPVVPMILINGADGIGTGWSSSIPNYNPEDVVDNLKRLMNGEEIKPMQPWFRGF 996
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
GE+ G RF +G I + ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 997 TGEVTSIGGDRFKFSGIIKETGEKEVEITELPIRTWTQDFKDKLEDIIK-AEK 1048
Score = 52.4 bits (124), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
YDYLLGM WSLT ER L ++ DK E++ L K + D+W DLD
Sbjct: 1219 YDYLLGMAIWSLTQERVERLRRQIGDKEMEIDTLIKLSKEDIWKRDLD 1266
>gi|409083318|gb|EKM83675.1| hypothetical protein AGABI1DRAFT_117173 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1549
Score = 580 bits (1494), Expect = e-162, Method: Compositional matrix adjust.
Identities = 298/656 (45%), Positives = 397/656 (60%), Gaps = 119/656 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+V + Y K SQ EHIL RPD+YIGS+E IT+ MW + + M +R++ YVPG KI DE
Sbjct: 93 TVSETYTKLSQHEHILKRPDSYIGSIETITQPMWTFDAGSKRMVQRDVKYVPGFLKIVDE 152
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNK D M+ IK+ ++ E NTISV+NNG+GIPV H EK+++P +IFGHLL+
Sbjct: 153 ILVNAADNKINDTSMDTIKVNIDVEENTISVYNNGRGIPVEIHSKEKIYIPELIFGHLLS 212
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
SSNY +D+E K+TGGRNGYGAKL NI+S +F VET+
Sbjct: 213 SSNY-------------------------DDDEKKLTGGRNGYGAKLANIYSHEFTVETA 247
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
+ +KQ+W +NM+ +I SK +++T+ITF PDL +F M S+D+D L+ +
Sbjct: 248 DKNTDQKYKQIWTENMTNCGKAKITKNSKGEEWTRITFKPDLQRFGMDSIDEDTASLLRK 307
Query: 270 RAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPV---------KIIYENV 320
R YD A + +DVKV+LN E+L +KNF+ YV++Y D + ++IYE +
Sbjct: 308 RVYDVAGTVRDVKVYLNDERLKIKNFKQYVEMYVDSVQAEAAEASGGAAQPKSQVIYERL 367
Query: 321 NPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTII 380
+ RWE+A SD FQ V+F NSI+T KGG HV+ + D + K I+ V KKNK
Sbjct: 368 SERWEIAFTVSDGSFQHVAFANSISTIKGGTHVNYIADHLSKHIMTAVSKKNK------- 420
Query: 381 MLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTK 440
G +KPFQ++NH+W+F+N LI NP FD QTK
Sbjct: 421 -----------------------------GAPVKPFQIRNHMWLFVNALIENPMFDGQTK 451
Query: 441 ENMTLQKGSFGS--------------------------------------------TCVP 456
E +TL FGS +
Sbjct: 452 ETLTLPSSKFGSKPTIKEDFIKKVLKTAIVDNVLHWAKAKADQQIKKTDGSKRNRLVGLT 511
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL DAN+AGT+ + DCTLILTEGDSAK+LAV+GLGVVGRD +GVFPLRGKLLNVREA H
Sbjct: 512 KLSDANNAGTRLAKDCTLILTEGDSAKALAVAGLGVVGRDYFGVFPLRGKLLNVREAKHD 571
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI++N EI N+ KILGLQ++K Y+ D+ +LRYGRLMIM DQD DGSHIKGL+INF H
Sbjct: 572 QIMKNEEIQNIKKILGLQHNKDYS---DVSSLRYGRLMIMADQDHDGSHIKGLLINFFDH 628
Query: 577 NWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+P+LL+LP FL EF+TPI++ K + F++LPE+E+W E + H ++ KYYK
Sbjct: 629 FYPSLLKLPEFLVEFVTPIVRIIKGKHRRDFFTLPEYEKWLLEAPDAHKWESKYYK 684
Score = 135 bits (341), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 82/115 (71%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE+Y+P+IP+VL NGAEGIGTGW T IP NP IV+NI+R++ GE+ + MKPW++ F
Sbjct: 894 IEPEFYLPVIPLVLCNGAEGIGTGWSTNIPCFNPAVIVENIRRLMNGEEQVAMKPWWRGF 953
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
KGEI ++ V+G I LDD +EITEL + +WT +YK L+ ++ G E E
Sbjct: 954 KGEIIATAKHKYDVHGVIHKLDDTTVEITELPIHRWTQNYKADLEAMIAGGENKE 1008
Score = 62.0 bits (149), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 36/51 (70%)
Query: 849 DKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
D D+DY+LGM WSLT E+ + LL++ DK EL IL +K P DLW+ DLD
Sbjct: 1168 DSDFDYMLGMAIWSLTKEKIDRLLQQAGDKEAELLILLEKTPIDLWNKDLD 1218
>gi|367012033|ref|XP_003680517.1| hypothetical protein TDEL_0C04170 [Torulaspora delbrueckii]
gi|359748176|emb|CCE91306.1| hypothetical protein TDEL_0C04170 [Torulaspora delbrueckii]
Length = 1400
Score = 579 bits (1493), Expect = e-162, Method: Compositional matrix adjust.
Identities = 310/662 (46%), Positives = 406/662 (61%), Gaps = 127/662 (19%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
S + YQK SQLEHIL RPDTYIGSVE + W+ + ET+ M + + VPGLYKIFDE
Sbjct: 7 SASERYQKISQLEHILKRPDTYIGSVESQEQQQWIHDEETDCMIEKTVNIVPGLYKIFDE 66
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNK RDP M I++ + +E N I V N+GKGIP+ H+ EK+++P +IFGHLLT
Sbjct: 67 ILVNAADNKVRDPSMKKIEVNIQREKNLIEVKNDGKGIPIEIHEKEKIYIPELIFGHLLT 126
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
SSNY+D +E KVTGGRNGYGAKLCNIFS++F +ET+
Sbjct: 127 SSNYDD-------------------------DEKKVTGGRNGYGAKLCNIFSTEFTLETA 161
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITR 269
S + + Q W++NM P+I S K FTK++F PDL +F M +LD D++ ++ R
Sbjct: 162 DSNTGQKYVQKWENNMGVCHPPKITSYKKGPSFTKVSFKPDLKRFSMETLDDDIIGVLRR 221
Query: 270 RAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDE---------DGDPVK---IIY 317
R YD S +D+ V+LNG+ L ++NF++YV+LY ++ D VK I+Y
Sbjct: 222 RVYDINGSVRDISVYLNGKSLKIRNFKNYVELYVKSLEKKRLAHGNTVDDSQVKMPTILY 281
Query: 318 ENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGC 377
E VN WE+A + SD FQQ+SFVNSIATT GG H++ + D I+K++ EV+KK+ K
Sbjct: 282 ERVNSCWEIAFSVSDISFQQISFVNSIATTAGGTHINYITDQIIKKVSEVLKKQKK---- 337
Query: 378 TIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDS 437
++KPFQ+KNHI++F+NCLI NP F S
Sbjct: 338 ----------------------------------SIKPFQIKNHIFLFVNCLIENPAFTS 363
Query: 438 QTKENMTLQKGSFGSTC------------------------------------------- 454
QTKE +T + FGS C
Sbjct: 364 QTKEQLTTRVRDFGSRCEISDDYVKKIMKTDLQARILEIATENENNALKKSDGSRKNRIT 423
Query: 455 -VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREA 513
PKLEDAN AGTK CTL+LTEGDSA SLAV+GL VVGRD YG +PLRGK+LNVREA
Sbjct: 424 DYPKLEDANKAGTKEGHKCTLVLTEGDSALSLAVAGLSVVGRDYYGCYPLRGKILNVREA 483
Query: 514 THKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINF 573
T +QIL+NAEI + KI+GLQ+ K+Y E+ +LRYG LMIMTDQD DGSHIKGLIINF
Sbjct: 484 TAEQILKNAEIQAIKKIMGLQHRKRY---ENTSSLRYGHLMIMTDQDHDGSHIKGLIINF 540
Query: 574 IHHNWPTLLRLP-FLEEFITPIIKATKA---REELSFYSLPEFEEWKEETTNWHTYKIKY 629
+ ++P LL +P FL EFITPI+K T RE +SFY++P++E+W+ E ++ +T+K KY
Sbjct: 541 LDSSFPGLLDIPGFLLEFITPIVKVTITRPRREVISFYNMPDYEKWRAEESSRYTWKQKY 600
Query: 630 YK 631
YK
Sbjct: 601 YK 602
Score = 113 bits (283), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 71/113 (62%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+PI+PM+LVNGAEGIGTGW T IP NP +IV N+K +++ E M PW+K +
Sbjct: 812 IEPEWYLPILPMILVNGAEGIGTGWSTNIPPFNPLDIVKNLKHLMKNEPMEEMHPWFKGW 871
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G ++ R+ + G+I LEITEL WT+ K+ L L G EK
Sbjct: 872 GGTLEKIDSQRYRMYGKIEQTGPTTLEITELPARTWTSTIKEYLLLGLSGTEK 924
Score = 42.0 bits (97), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
++YLLGM WSLT ER LLK++ +K EL +L + + LW D++
Sbjct: 1109 FEYLLGMRIWSLTKERYERLLKQKQEKQVELELLLELSAQQLWETDIEEF 1158
>gi|224055129|ref|XP_002298421.1| predicted protein [Populus trichocarpa]
gi|222845679|gb|EEE83226.1| predicted protein [Populus trichocarpa]
Length = 1468
Score = 579 bits (1493), Expect = e-162, Method: Compositional matrix adjust.
Identities = 321/667 (48%), Positives = 408/667 (61%), Gaps = 132/667 (19%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E+ YQKKSQLEHILLRPDTYIGS+E +T+W+ E + + R +TYVPGLYKIFDE
Sbjct: 6 TIEETYQKKSQLEHILLRPDTYIGSIEKHAQTLWVY--EGDKIVHRPVTYVPGLYKIFDE 63
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNKQRDPKM+ +K+ ++ E N +SV+NNG G+PV HK+E ++VP +IFGHLLT
Sbjct: 64 ILVNAADNKQRDPKMDSLKVVIDGENNLVSVYNNGDGVPVEIHKEEGVYVPELIFGHLLT 123
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
SSNY +D E K TGGRNGYGAKL NIFS++FV+ET+
Sbjct: 124 SSNY-------------------------DDAEKKTTGGRNGYGAKLTNIFSTEFVIETA 158
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
+ +K +KQV+ +NM K + P I K +++TK+TF DL KF MT L++D+V L+ +
Sbjct: 159 DGKRQKKYKQVFSNNMGKKSEPMITKCKEGENWTKVTFKADLAKFSMTHLEEDVVALMKK 218
Query: 270 RAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGD--PVKIIYENVNPRWEV 326
R D A K VKV LNG ++PVK+FQDYV +Y + E G P + YE V RWEV
Sbjct: 219 RVVDIAGCLGKTVKVELNGSRVPVKSFQDYVYMYLNSASEPGSERPKRFFYEKVGERWEV 278
Query: 327 AIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNK 386
++ ++ FQQVSFVNSIAT KGG HVD V + I ++ V KK+K+
Sbjct: 279 CVSLTEGQFQQVSFVNSIATIKGGTHVDYVTNQITNYVMNAVNKKHKNSN---------- 328
Query: 387 FNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ 446
+K VKN++W+F+NCLI NP FDSQTKE +TL+
Sbjct: 329 --------------------------IKAHNVKNYLWVFVNCLIDNPAFDSQTKETLTLR 362
Query: 447 KGSFGSTC-------------------------------------------VPKLEDAND 463
+ SFGS C VPKLEDAN+
Sbjct: 363 QSSFGSKCELSEDFLKKVAKSDIVDNLLSWAKFKESKELKKTDGTKTAKVNVPKLEDANE 422
Query: 464 AGTKNSIDCTLILTEGDSAKSLAVSGLGVVG---RDKYGVFPLRGKLLNVREATHKQILE 520
AG + S CTLILTEGDSAK+LAV+G+ + R YGVFPLRGKLLNVREAT KQ+ E
Sbjct: 423 AGGRYSEKCTLILTEGDSAKALAVTGVAGLTQTERSFYGVFPLRGKLLNVREATPKQLKE 482
Query: 521 NAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTD-------------QDQDGSHIK 567
N EI + KILGLQ+ K+Y+ V K+LRYG LMIMTD QD DGSHIK
Sbjct: 483 NKEIECIKKILGLQHHKQYSNV---KSLRYGHLMIMTDQAKERFANFLCFKQDHDGSHIK 539
Query: 568 GLIINFIHHNWPTLLRLP-FLEEFITPIIKAT-KAREELSFYSLPEFEEWKEETT-NWHT 624
GL+INF+H WP+LL++P FL EFITPI+KAT + LSFYS+PE+E WK N
Sbjct: 540 GLLINFLHSFWPSLLKVPSFLVEFITPIVKATHRNGTVLSFYSMPEYESWKGSLAGNASG 599
Query: 625 YKIKYYK 631
+ IKYYK
Sbjct: 600 WSIKYYK 606
Score = 134 bits (337), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 81/115 (70%), Gaps = 6/115 (5%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY+PIIPMVLVNG EGIGTGW T IPN+NPR+IV NI+R++ GE PM PWY+ F
Sbjct: 816 IEPNWYMPIIPMVLVNGCEGIGTGWSTFIPNYNPRDIVANIRRLLNGEMMEPMNPWYRGF 875
Query: 720 KGEIDYCGDSR-----FVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHG 769
KG I+ G S+ + VNG I +++ L ITEL + +WT DYK L+++ G
Sbjct: 876 KGTIEK-GASKEAGCSYTVNGVINEVNETTLRITELPIRRWTDDYKAFLNSVTEG 929
Score = 46.2 bits (108), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%)
Query: 821 PQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMT 880
P+ + A + DEA + DYDYLL M +LT+E+ +L D
Sbjct: 1075 PKKSKAVVAGATDDKDEAEDSLEVSGVRASDYDYLLSMAIGTLTLEKVQQLCADHDKLNG 1134
Query: 881 ELNILKKKAPTDLWSDDLDAL 901
E++ L+K P LW DL+AL
Sbjct: 1135 EVDNLRKTTPIVLWVKDLEAL 1155
>gi|449304612|gb|EMD00619.1| hypothetical protein BAUCODRAFT_144266 [Baudoinia compniacensis
UAMH 10762]
Length = 1725
Score = 579 bits (1492), Expect = e-162, Method: Compositional matrix adjust.
Identities = 315/669 (47%), Positives = 405/669 (60%), Gaps = 123/669 (18%)
Query: 19 PSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREI 78
P KKT K S + YQK +QLEHIL RPDTYIGSVE TE MW+ N ET+ ME R++
Sbjct: 123 PKSAKKT---KGSATEQYQKLTQLEHILKRPDTYIGSVERTTEQMWVYNSETDQMENRKV 179
Query: 79 TYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKM 138
TYVPGLYKIFDEILVNA DNKQRD MN +++ VN+E ISV NNG+GIPV H E +
Sbjct: 180 TYVPGLYKIFDEILVNAADNKQRDKNMNEMRVLVNREMGVISVQNNGRGIPVEIHATEGI 239
Query: 139 FVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLC 198
++P MIF GHLLTSSNY+DEE KVTGGRNGYGAKL
Sbjct: 240 YIPEMIF-------------------------GHLLTSSNYDDEEAKVTGGRNGYGAKLT 274
Query: 199 NIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTS 258
NI+S++F +ET S+ K+ +KQ WK NMS++ + +I+ +DD+TKITF PD KF M
Sbjct: 275 NIYSTQFQLETVDSKTKQKYKQTWKKNMSEIGTAKIEPCKEDDYTKITFMPDFRKFGMDK 334
Query: 259 LDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR-------QDEDGD 311
+D D L+ RR YD A + VKVFLN +++ + F+ Y+++YT + +
Sbjct: 335 MDDDFEALVKRRVYDMAGTCTGVKVFLNDKRIKISKFKQYMEMYTKAIKSENLANGTESE 394
Query: 312 PVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK 371
V I+ +N + RWE+ A SD FQQVSFVNSIATT GG HV+ + D I ++ E+V KK
Sbjct: 395 QV-ILTDNPHERWEIGFAVSDGSFQQVSFVNSIATTSGGTHVNYIADQICDKLEEIVNKK 453
Query: 372 NKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIV 431
NK GG+ LK Q++NHI++F+N LIV
Sbjct: 454 NK-----------------------------------GGVKLKKAQIRNHIFLFVNALIV 478
Query: 432 NPTFDSQTKENMTLQKGSFGS------------------TCV------------------ 455
NP F SQTKE +T + +FGS T +
Sbjct: 479 NPAFTSQTKEQLTTKPSAFGSKPQVSEKFLKDIAKTEAVTNILHFAQQKADKVLAKSDGN 538
Query: 456 -------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLL 508
KL DANDAGTK+ CTLILTEGDSA LA++G VVG D++GVFPLRGKLL
Sbjct: 539 RRQRMNNSKLTDANDAGTKDGYKCTLILTEGDSASLLALAGRAVVGPDRFGVFPLRGKLL 598
Query: 509 NVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKG 568
NVR+A+ QI +N EI N+ K +GLQ+ K+YT D K+LRYG LMIMTDQD DGSHIKG
Sbjct: 599 NVRDASIDQISKNQEIQNIKKFMGLQHKKEYT---DTKSLRYGHLMIMTDQDHDGSHIKG 655
Query: 569 LIINFIHHNWPTLLRLP-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNW 622
L+INF+ +P+LL++P FL EFITPI+K + + + F+++PE+E WKE+ N
Sbjct: 656 LLINFLQVQFPSLLKIPGFLLEFITPIVKVWRGDPKNPKAKRDFFTMPEYEAWKEQPGNE 715
Query: 623 HTYKIKYYK 631
+ KYYK
Sbjct: 716 RGWDHKYYK 724
Score = 122 bits (305), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 81/116 (69%), Gaps = 4/116 (3%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGE--DPL-PMKPWY 716
IEPE Y+PI+PM+L+NGA+GIGTGW T IPN+NP +++ N+KR + G+ D + M PW+
Sbjct: 935 IEPECYLPIVPMILINGADGIGTGWSTSIPNYNPEDVIANLKRRMEGDGKDAMQAMTPWF 994
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
+ + G ++ D +F NG I + D+ +E+TEL V WT D+KD L+ ++ AEK
Sbjct: 995 RGWTGPVEQTRDDQFKFNGVITVTGDNTVEVTELPVRVWTQDFKDKLEDIIK-AEK 1049
Score = 67.4 bits (163), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
YDYLLGM WSLT ER +LLK+ DK TE++ L KK+ DLW DLDAL E
Sbjct: 1223 YDYLLGMAIWSLTQERVEKLLKQIGDKETEIDALTKKSAKDLWKTDLDALLE 1274
>gi|358366486|dbj|GAA83107.1| DNA topoisomerase II [Aspergillus kawachii IFO 4308]
Length = 1695
Score = 579 bits (1492), Expect = e-162, Method: Compositional matrix adjust.
Identities = 307/647 (47%), Positives = 393/647 (60%), Gaps = 119/647 (18%)
Query: 40 SQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNK 99
+QLEHI+ RPDTYIGSVE T+ MW+ + E+ ME RE++YVPGLYKIFDEI+VNA DNK
Sbjct: 125 TQLEHIIKRPDTYIGSVERTTQQMWVYSSESEGMEYREVSYVPGLYKIFDEIVVNAADNK 184
Query: 100 QRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEED 159
Q D M+ I++TV++E+ ISVWNNG+GIP+ H EK++VP +IFGHLLTSSNY
Sbjct: 185 QNDENMSEIRVTVDRESGVISVWNNGRGIPIEMHAKEKIYVPELIFGHLLTSSNY----- 239
Query: 160 KVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFK 219
+D + KVTGGRNG+GAKLCN+FS++F +ET S KK +K
Sbjct: 240 --------------------DDTQQKVTGGRNGFGAKLCNVFSTEFSIETQDSSQKKKYK 279
Query: 220 QVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTK 279
Q W DNM+K+ +I +D+TK+TF PD KF M +D D L+ RR YD A + K
Sbjct: 280 QTWTDNMTKIGKAKITEAKGEDYTKVTFKPDYAKFSMDGMDDDFEALVKRRVYDLAGTAK 339
Query: 280 DVKVFLNGEKLPVKNFQDYVKLYTDR-QDEDGD--PV---KIIYENVNPRWEVAIAPSDR 333
V V LNG ++P++ F+ Y+++YT + E GD P +II + +PRWEV A SD
Sbjct: 340 -VNVKLNGTRIPIRGFKKYMEMYTKAIRKERGDTGPAPKDEIITCSPDPRWEVGFAVSDG 398
Query: 334 GFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNN 393
FQQVSFVNSIATT GG HV+ + D I ++ E VKKKNK+
Sbjct: 399 AFQQVSFVNSIATTSGGTHVNYIADQICNRLAEQVKKKNKN------------------- 439
Query: 394 KLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGST 453
G LK Q++NHI+IF+N LIVNP F SQTKE +T + FGS
Sbjct: 440 ----------------GATLKTAQIRNHIFIFVNALIVNPAFTSQTKEQLTTKASQFGSK 483
Query: 454 CV-------------------------------------------PKLEDANDAGTKNSI 470
CV PKL DAN AGTK+
Sbjct: 484 CVLDEDFYKKILKTAVMENILHFAQQKADQMLKKTDGGRRSRMNNPKLTDANKAGTKDGH 543
Query: 471 DCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKI 530
CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +N EI N+
Sbjct: 544 HCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASFDQISKNQEIQNIKNF 603
Query: 531 LGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEE 589
LGLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+INF+ +P+LL++P FL E
Sbjct: 604 LGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINFLQAQFPSLLKIPEFLIE 660
Query: 590 FITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FITPI+K K ++ SF+++PE+E W EE + + KYYK
Sbjct: 661 FITPIVKVWKGDPKNPTKQRSFFTMPEYEAWAEEHKHERGWDHKYYK 707
Score = 133 bits (335), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 83/113 (73%), Gaps = 1/113 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++PM+L+NGA+GIGTGW + IPN+NP ++VDN+KR++ GE+ PM+PW++ F
Sbjct: 917 IEPEIYMPVVPMILINGADGIGTGWSSSIPNYNPEDVVDNLKRLMDGEEIKPMQPWFRGF 976
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
GE+ G RF +G I + ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 977 TGEVTAIGGDRFKFSGIIKETGEKEVEITELPIRTWTQDFKDKLEDIIK-AEK 1028
Score = 50.4 bits (119), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
YDYLLGM WSLT ER L ++ DK E++ L K + D+W DL+
Sbjct: 1199 YDYLLGMAIWSLTQERVERLRRQIGDKEMEIDTLIKLSKEDIWKRDLE 1246
>gi|426201630|gb|EKV51553.1| hypothetical protein AGABI2DRAFT_197775 [Agaricus bisporus var.
bisporus H97]
Length = 1551
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 298/656 (45%), Positives = 397/656 (60%), Gaps = 119/656 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+V + Y K SQ EHIL RPD+YIGS+E IT+ MW + + M +R++ YVPG KI DE
Sbjct: 95 TVSETYTKLSQHEHILKRPDSYIGSIETITQPMWTYDAGSKRMVQRDVKYVPGFLKIVDE 154
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNK D M+ IK+ ++ E NTISV+NNG+GIPV H EK+++P +IFGHLL+
Sbjct: 155 ILVNAADNKINDTSMDTIKVNIDVEENTISVYNNGRGIPVEIHSKEKIYIPELIFGHLLS 214
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
SSNY +D+E K+TGGRNGYGAKL NI+S +F VET+
Sbjct: 215 SSNY-------------------------DDDEKKLTGGRNGYGAKLANIYSHEFTVETA 249
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
+ +KQ+W +NM+ +I SK +++T+ITF PDL +F M S+D+D L+ +
Sbjct: 250 DKNTDQKYKQIWTENMTNCGKAKITKNSKGEEWTRITFKPDLQRFGMDSIDEDTASLLRK 309
Query: 270 RAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPV---------KIIYENV 320
R YD A + +DVKV+LN E+L +KNF+ YV++Y D + ++IYE +
Sbjct: 310 RVYDVAGTVRDVKVYLNDERLKIKNFKQYVEMYVDSVQAEAAEASGGAAQPKSQVIYERL 369
Query: 321 NPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTII 380
+ RWE+A SD FQ V+F NSI+T KGG HV+ + D + K I+ V KKNK
Sbjct: 370 SERWEIAFTVSDGSFQHVAFANSISTIKGGTHVNYIADHLSKHIMTAVSKKNK------- 422
Query: 381 MLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTK 440
G +KPFQ++NH+W+F+N LI NP FD QTK
Sbjct: 423 -----------------------------GAPVKPFQIRNHMWLFVNALIENPMFDGQTK 453
Query: 441 ENMTLQKGSFGS--------------------------------------------TCVP 456
E +TL FGS +
Sbjct: 454 ETLTLPSSKFGSKPTIKEDFIKKVLKTAIVDNVLHWAKAKADQQIKKTDGSKRNRLVGLT 513
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL DAN+AGT+ + DCTLILTEGDSAK+LAV+GLGVVGRD +GVFPLRGKLLNVREA H
Sbjct: 514 KLSDANNAGTRLAKDCTLILTEGDSAKALAVAGLGVVGRDYFGVFPLRGKLLNVREAKHD 573
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI++N EI N+ KILGLQ++K Y+ D+ +LRYGRLMIM DQD DGSHIKGL+INF H
Sbjct: 574 QIMKNEEIQNIKKILGLQHNKDYS---DVSSLRYGRLMIMADQDHDGSHIKGLLINFFDH 630
Query: 577 NWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+P+LL+LP FL EF+TPI++ K + F++LPE+E+W E + H ++ KYYK
Sbjct: 631 FYPSLLKLPEFLVEFVTPIVRIIKGKHRRDFFTLPEYEKWLLEAPDAHKWESKYYK 686
Score = 135 bits (341), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 82/115 (71%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE+Y+P+IP+VL NGAEGIGTGW T IP NP IV+NI+R++ GE+ + MKPW++ F
Sbjct: 896 IEPEFYLPVIPLVLCNGAEGIGTGWSTNIPCFNPAVIVENIRRLMNGEEQVAMKPWWRGF 955
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
KGEI ++ V+G I LDD +EITEL + +WT +YK L+ ++ G E E
Sbjct: 956 KGEIIATAKHKYDVHGVIHKLDDTTVEITELPIHRWTQNYKADLEAMIAGGENKE 1010
Score = 62.0 bits (149), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 36/51 (70%)
Query: 849 DKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
D D+DY+LGM WSLT E+ + LL++ DK EL IL +K P DLW+ DLD
Sbjct: 1170 DSDFDYMLGMAIWSLTKEKIDRLLQQAGDKEAELLILLEKTPIDLWNKDLD 1220
>gi|350629974|gb|EHA18347.1| DNA topoisomerase II [Aspergillus niger ATCC 1015]
Length = 1639
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 310/666 (46%), Positives = 400/666 (60%), Gaps = 124/666 (18%)
Query: 26 PANKMSVEKIYQKKS-----QLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITY 80
P + + YQK S QLEHI+ RPDTYIGSVE T+ MW+ + E++ ME RE++Y
Sbjct: 53 PGKSNNASEKYQKASISGLTQLEHIIKRPDTYIGSVERTTQQMWVYSSESDGMEYREVSY 112
Query: 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
VPGLYKIFDEI+VNA DNKQ D M+ I++TV++E+ ISVWNNG+GIP+ H EK++V
Sbjct: 113 VPGLYKIFDEIVVNAADNKQNDENMSEIRVTVDRESGVISVWNNGRGIPIEMHAKEKIYV 172
Query: 141 PTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNI 200
P +IFGHLLTSSNY +D + KVTGGRNG+GAKLCN+
Sbjct: 173 PELIFGHLLTSSNY-------------------------DDTQQKVTGGRNGFGAKLCNV 207
Query: 201 FSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLD 260
FS++F +ET S KK ++Q W +NM+K+ +I +D+TK+TF PD KF M +D
Sbjct: 208 FSTEFSIETQDSSQKKKYRQTWTENMTKIGKAKITEAKGEDYTKVTFKPDYAKFGMDGMD 267
Query: 261 KDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR-QDEDGD--PV---K 314
D L+ RR YD A + K V V LNG ++P++ F+ Y+++YT + E GD P +
Sbjct: 268 DDFEALVKRRVYDLAGTAK-VNVKLNGTRIPIRGFKKYMEMYTKAIRKERGDTGPAPKDE 326
Query: 315 IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKD 374
II + +PRWEV A SD FQQVSFVNSIATT GG HV+ + D I ++ E VKKKNK+
Sbjct: 327 IITCSPDPRWEVGFAVSDGAFQQVSFVNSIATTSGGTHVNYIADQICNRLAEQVKKKNKN 386
Query: 375 LGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPT 434
G LK Q++NHI+IF+N LIVNP
Sbjct: 387 -----------------------------------GATLKTAQIRNHIFIFVNALIVNPA 411
Query: 435 FDSQTKENMTLQKGSFGSTCV--------------------------------------- 455
F SQTKE +T + FGS CV
Sbjct: 412 FTSQTKEQLTTKASQFGSKCVLDEDFYKKILKTAVMENILHFAQQKADQMLKKTDGGRRS 471
Query: 456 ----PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVR 511
PKL DAN AGTK+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR
Sbjct: 472 RMNNPKLTDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVR 531
Query: 512 EATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLII 571
+A+ QI +N EI N+ LGLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+I
Sbjct: 532 DASFDQISKNQEIQNIKNFLGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLI 588
Query: 572 NFIHHNWPTLLRLP-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTY 625
NF+ +P+LL++P FL EFITPI+K K ++ SF+++PE+E W EE + +
Sbjct: 589 NFLQAQFPSLLKIPEFLIEFITPIVKVWKGDPKNPTKQRSFFTMPEYEAWAEEHQHERGW 648
Query: 626 KIKYYK 631
KYYK
Sbjct: 649 DHKYYK 654
Score = 134 bits (336), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 83/113 (73%), Gaps = 1/113 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++PM+L+NGA+GIGTGW + IPN+NP ++VDN+KR++ GE+ PM+PW++ F
Sbjct: 864 IEPEVYMPVVPMILINGADGIGTGWSSSIPNYNPEDVVDNLKRLMNGEEIKPMQPWFRGF 923
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
GE+ G RF +G I + ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 924 TGEVTSIGGDRFKFSGIIKETGEKEVEITELPIRTWTQDFKDKLEDIIK-AEK 975
Score = 52.4 bits (124), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
YDYLLGM WSLT ER L ++ DK E++ L K + D+W DLD
Sbjct: 1146 YDYLLGMAIWSLTQERVERLRRQIGDKEMEIDTLIKLSKEDIWKRDLD 1193
>gi|15229538|ref|NP_189031.1| DNA topoisomerase 2 [Arabidopsis thaliana]
gi|1174740|sp|P30182.2|TOP2_ARATH RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
II
gi|474890|gb|AAA65448.1| topoisomerase II [Arabidopsis thaliana]
gi|9294657|dbj|BAB03006.1| DNA topoisomerase II [Arabidopsis thaliana]
gi|332643305|gb|AEE76826.1| DNA topoisomerase 2 [Arabidopsis thaliana]
Length = 1473
Score = 578 bits (1490), Expect = e-161, Method: Compositional matrix adjust.
Identities = 326/674 (48%), Positives = 418/674 (62%), Gaps = 122/674 (18%)
Query: 14 QNGNGPS-----PKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNR 68
QN N + K + A ++E++YQKKSQLEHILLRPDTYIGS+E T+T+W+
Sbjct: 8 QNSNAANVAKAPAKSRAAAGGKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQTLWVY-- 65
Query: 69 ETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGI 128
E + M +R +TYVPGLYKIFDEILVNA DNKQRD KM+ +++ ++ E N ISV N+G G+
Sbjct: 66 EKDEMVQRPVTYVPGLYKIFDEILVNAADNKQRDAKMDSVQVVIDVEQNLISVCNSGAGV 125
Query: 129 PVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTG 188
PV H++E ++VP MIFGHLLTSSN Y+D K TG
Sbjct: 126 PVEIHQEEGIYVPEMIFGHLLTSSN-------------------------YDDNVKKTTG 160
Query: 189 GRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITF 247
GRNGYGAKL NIFS++F++ET+ + K +KQV+++NM K + P I K +++TK+TF
Sbjct: 161 GRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFENNMGKKSEPVITKCNKSENWTKVTF 220
Query: 248 TPDLTKFKMTSLDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQ 306
PDL KF MT L+ D+V L+++R +D A K VKV LNG+++PVK+F DYV LY
Sbjct: 221 KPDLKKFNMTELEDDVVALMSKRVFDIAGCLGKSVKVELNGKQIPVKSFTDYVDLYLSAA 280
Query: 307 DEDG--DPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQI 364
++ DP+ + E VN RWEV ++ S+ FQQVSFVNSIAT KGG HVD V I I
Sbjct: 281 NKSRTEDPLPRLTEKVNDRWEVCVSLSEGQFQQVSFVNSIATIKGGTHVDYVTSQITNHI 340
Query: 365 IEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWI 424
+ V KKNK+ +K VKNH+W+
Sbjct: 341 VAAVNKKNKN------------------------------------ANVKAHNVKNHLWV 364
Query: 425 FINCLIVNPTFDSQTKENMTLQKGSFGSTC------------------------------ 454
F+N LI NP FDSQTKE +TL++ SFGS C
Sbjct: 365 FVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKKVGKSGVVENLLSWADFKQNKD 424
Query: 455 -------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVF 501
V KL+DA +AG KNS CTLILTEGDSAKSLA++G V+G + GVF
Sbjct: 425 LKKSDGAKTGRVLVEKLDDAAEAGGKNSRLCTLILTEGDSAKSLALAGRSVLGNNYCGVF 484
Query: 502 PLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQ 561
PLRGKLLNVREA+ QI N EI NL KILGL+ + KY E++ +LRYG++MIMTDQD
Sbjct: 485 PLRGKLLNVREASTTQITNNKEIENLKKILGLKQNMKY---ENVNSLRYGQMMIMTDQDH 541
Query: 562 DGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATK--AREELSFYSLPEFEEWKEE 618
DGSHIKGL+INFIH WP+LL++P FL EFITPI+KAT+ ++ LSFYS+PE+EEWKE
Sbjct: 542 DGSHIKGLLINFIHSFWPSLLQVPSFLVEFITPIVKATRKGTKKVLSFYSMPEYEEWKES 601
Query: 619 TT-NWHTYKIKYYK 631
N + IKYYK
Sbjct: 602 LKGNATGWDIKYYK 615
Score = 135 bits (340), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 77/112 (68%), Gaps = 4/112 (3%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEP WY+PIIP VLVNGAEGIGTGW T IPN+NPREIV N++R++ GE +PM PWY+
Sbjct: 824 RIEPTWYMPIIPTVLVNGAEGIGTGWSTFIPNYNPREIVANVRRLLNGESMVPMDPWYRG 883
Query: 719 FKGEIDYC----GDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
FKG I+ G + + G +D+ + ITEL + +W DYK+ L +L
Sbjct: 884 FKGTIEKTASKEGGCTYTITGLYEEVDETTIRITELPIRRWNDDYKNFLQSL 935
Score = 51.6 bits (122), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 848 PDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
P +YDYLL M SLT+E+ ELL RD + + +KK P LW DL++L
Sbjct: 1113 PGSEYDYLLAMAIASLTIEKVEELLADRDKMIIAVADMKKTTPKSLWLSDLESL 1166
>gi|18369814|dbj|BAB84102.1| DNA topoisomerase II [Aspergillus niger]
Length = 1391
Score = 578 bits (1490), Expect = e-161, Method: Compositional matrix adjust.
Identities = 308/661 (46%), Positives = 398/661 (60%), Gaps = 119/661 (18%)
Query: 26 PANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLY 85
P + + YQK +QLEHI+ RPDTYIGSVE T+ MW+ + E+ ME RE++YVPGLY
Sbjct: 53 PGKSNNASEKYQKLTQLEHIIKRPDTYIGSVERTTQQMWVYSSESEGMEYREVSYVPGLY 112
Query: 86 KIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIF 145
KIFDEI+VNA DNKQ D M+ I++TV++E+ ISVWNNG+GIP+ H EK++VP +IF
Sbjct: 113 KIFDEIVVNAADNKQNDENMSEIRVTVDRESGVISVWNNGRGIPIEMHAKEKIYVPELIF 172
Query: 146 GHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF 205
GHLLTSSNY +D + KVTGGRNG+GAKLCN+FS++F
Sbjct: 173 GHLLTSSNY-------------------------DDTQQKVTGGRNGFGAKLCNVFSTEF 207
Query: 206 VVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVD 265
+ET S KK ++Q W +NM+K+ +I +D+ K+TF PD KF M +D D
Sbjct: 208 SIETQDSSQKKKYRQTWTENMTKIGKAKITEAKGEDYAKVTFKPDYAKFGMDGMDDDFEA 267
Query: 266 LITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR-QDEDGD--PV---KIIYEN 319
L+ RR YD A + K V V LNG ++P++ F+ Y+++YT + E GD P +II +
Sbjct: 268 LVKRRVYDLAGTAK-VNVKLNGTRIPIRGFKKYMEMYTKAIRKERGDTGPAPKDEIITCS 326
Query: 320 VNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTI 379
+PRWEV A SD FQQVSFVNSIATT GG HV+ + D I ++ E VKKKNK+
Sbjct: 327 PDPRWEVGFAVSDGAFQQVSFVNSIATTSGGTHVNYIADRICNRLAEQVKKKNKN----- 381
Query: 380 IMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQT 439
G LK Q++NHI+IF+N LIVNP F SQT
Sbjct: 382 ------------------------------GATLKTAQIRNHIFIFVNALIVNPAFTSQT 411
Query: 440 KENMTLQKGSFGSTCV-------------------------------------------P 456
KE +T + FGS CV P
Sbjct: 412 KEQLTTKASQFGSKCVLDEDFYKKVLKTAVMDNILHFAQQKADQMLKKTDGGRRSRMNNP 471
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL DAN AGTK+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+
Sbjct: 472 KLTDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASFD 531
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI +N EI N+ LGLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+INF+
Sbjct: 532 QISKNQEIQNIKNFLGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINFLQA 588
Query: 577 NWPTLLRLP-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYY 630
+P+LL++P FL EFITPI+K K ++ SF+++PE+E W EE + + KYY
Sbjct: 589 QFPSLLKIPEFLIEFITPIVKVWKGDPKNPTKQRSFFTMPEYEAWAEEHQHERGWDHKYY 648
Query: 631 K 631
K
Sbjct: 649 K 649
Score = 133 bits (334), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 83/113 (73%), Gaps = 1/113 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++PM+L+NGA+GIGTGW + IPN+NP ++VDN+KR++ GE+ PM+PW++ F
Sbjct: 859 IEPEVYMPVVPMILINGADGIGTGWSSSIPNYNPEDVVDNLKRLMNGEEIKPMQPWFRGF 918
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
GE+ G RF +G I + ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 919 TGEVTSIGGDRFKFSGIIKETGEKEVEITELPIRTWTQDFKDKLEDIIK-AEK 970
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
YDYLLGM WSLT ER L ++ DK E++ L K + D+W DLD
Sbjct: 1141 YDYLLGMAIWSLTQERVERLRRQIGDKEMEIDTLIKLSKEDIWKRDLD 1188
>gi|401881418|gb|EJT45718.1| DNA topoisomerase II [Trichosporon asahii var. asahii CBS 2479]
gi|406701579|gb|EKD04695.1| DNA topoisomerase II [Trichosporon asahii var. asahii CBS 8904]
Length = 1525
Score = 578 bits (1490), Expect = e-161, Method: Compositional matrix adjust.
Identities = 306/659 (46%), Positives = 399/659 (60%), Gaps = 131/659 (19%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYK 86
A K + ++YQK RPDTYIGSVEP T+ MW+ + E M R ITYVPG +K
Sbjct: 156 AKKKTASEMYQK---------RPDTYIGSVEPHTQPMWVFDSENKAMVNRTITYVPGFFK 206
Query: 87 IFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFG 146
IFDEILVNA DNK DP M+ IK+ +++E N+ISVWNNGKGIPV H E + +P +IFG
Sbjct: 207 IFDEILVNAADNKINDPTMDTIKVNIDRENNSISVWNNGKGIPVEMHSKEGIMIPELIFG 266
Query: 147 HLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFV 206
+L NY+D++ K+TGGRNGYGAKL NI+S +F
Sbjct: 267 NL-----------------------------NYDDDQKKLTGGRNGYGAKLANIYSLEFT 297
Query: 207 VETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDMVD 265
VET+ K +KQV+ NM K T+P+I K +++T+ITF PDL +F MT++D D
Sbjct: 298 VETADKSNMKKYKQVFSQNMGKKTTPKITENKKGEEWTQITFKPDLARFSMTNIDDDTYA 357
Query: 266 LITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY----TDRQDEDGDPV---KIIYE 318
L+ +R YD A + KD+KV LNGE+L VKNF+ YV +Y + +G V ++YE
Sbjct: 358 LLMKRVYDVAGTVKDIKVNLNGERLKVKNFKQYVDMYVAANSAAHTAEGAAVTKPTVVYE 417
Query: 319 NVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCT 378
N RWEVA A SD F QVSF NSIATTKGG HVD + + ++ + KKNK
Sbjct: 418 NAGKRWEVAFALSDGEFNQVSFANSIATTKGGTHVDMIATQLANKLQAFIVKKNK----- 472
Query: 379 IIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQ 438
AK +KPFQ+K+H+WIF+N LI NP+FDSQ
Sbjct: 473 ------------------TAK-------------VKPFQIKSHMWIFVNALIENPSFDSQ 501
Query: 439 TKENMTLQKGSFGSTC-------------------------------------------- 454
TKE +TL+ +FGS C
Sbjct: 502 TKETLTLKSSAFGSKCELSEEFIKKVAKSGIVENVLAFAKFKQDQAMKKTDGAKRSRIGG 561
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVV-GRDKYGVFPLRGKLLNVREA 513
+ KL+DAN AG +N+ CTLILTEGDSAKS+AVSG+G + GRD++G+FPLRGKLLNVREA
Sbjct: 562 IAKLDDANWAGGRNASQCTLILTEGDSAKSMAVSGVGAIQGRDRFGIFPLRGKLLNVREA 621
Query: 514 THKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINF 573
H QI++N EI N+ +ILGL+++ YT+ + +LRYG LMIMTDQD DGSHIKGLIINF
Sbjct: 622 NHDQIMKNQEIQNIKQILGLKHNHNYTSTD---SLRYGHLMIMTDQDHDGSHIKGLIINF 678
Query: 574 IHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+ H +P+LL++P FL EFITPI+K TK ++E F+++PE+EEWKE N H + KY K
Sbjct: 679 LDHFYPSLLKIPNFLNEFITPIVKVTKGKQERMFFTMPEYEEWKEANNNGHGWFAKYLK 737
Score = 145 bits (367), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/116 (50%), Positives = 89/116 (76%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE+Y+P++P+VL+NGA+GIGTGW T IPN+NP+++V+NI+RM+RGE+P PM PW++ F
Sbjct: 936 IEPEYYMPVVPLVLINGADGIGTGWSTSIPNYNPKDVVENIRRMMRGEEPEPMVPWFRGF 995
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDEV 775
KG I+ +F V+G +DD +EITEL V KWT D+K+ ++ + G++ +V
Sbjct: 996 KGTIERLDKDKFKVSGVAEKIDDKTIEITELPVRKWTQDFKEMIEQMTSGSDTPKV 1051
Score = 60.8 bits (146), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 35/53 (66%)
Query: 849 DKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
D DYDYLLGM W+LT E+ +LL++RD K EL L K P D+WS DLD
Sbjct: 1215 DADYDYLLGMAIWNLTEEKVKKLLEQRDAKEQELIELLKLTPQDIWSKDLDEF 1267
>gi|303276424|ref|XP_003057506.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461858|gb|EEH59151.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1473
Score = 578 bits (1490), Expect = e-161, Method: Compositional matrix adjust.
Identities = 313/664 (47%), Positives = 408/664 (61%), Gaps = 117/664 (17%)
Query: 18 GPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERRE 77
P T + S+E IYQKK+QLEHILLRPDTY+GS E W+ ++ETN + +R
Sbjct: 41 APPTASATSSPGKSIEDIYQKKTQLEHILLRPDTYVGSCEKTEALTWVYDKETNKLVQRN 100
Query: 78 ITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEK 137
+++VPGLYKIFDEILVNA DNK RDP M +++ ++ TI V+N+G GIPV HK+E
Sbjct: 101 MSFVPGLYKIFDEILVNATDNKVRDPTMVTLRVDIDSAEGTIKVFNDGNGIPVEMHKEEG 160
Query: 138 MFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKL 197
++VP +IFGHLLTSSNY+ D E KVTGGRNGYGAKL
Sbjct: 161 VYVPELIFGHLLTSSNYD-------------------------DNEKKVTGGRNGYGAKL 195
Query: 198 CNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKM 256
NIFS++F++ET ++ ++QV+K+NM + P + K D++T ITF PDL+KF M
Sbjct: 196 ANIFSTEFIIETCDGARERRYRQVFKNNMGEKCEPVVTKCKKSDNWTCITFKPDLSKFNM 255
Query: 257 TSLDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKI 315
T L+ D V L+ +R YDAA + K+ K+FLNG++L VK F DYV LY + ++
Sbjct: 256 THLEDDTVALMCKRVYDAAGNIGKNTKIFLNGDRLKVKGFSDYVDLYLEGREN----APK 311
Query: 316 IYENVNPRWEVAIAPSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKD 374
++E VN RWEV + SD G FQQ SFVN I T KGG HV+AV D D
Sbjct: 312 VFEKVNDRWEVCVTISDTGNFQQCSFVNGICTMKGGTHVNAVAD---------------D 356
Query: 375 LGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPT 434
+ ++ K + KN LK VKNH+W+F+N LI NP
Sbjct: 357 VATKLLEKIKKKEKSCKN--------------------LKSTHVKNHLWVFVNALIENPA 396
Query: 435 FDSQTKENMTLQKGSFGS------------------------------------------ 452
FDSQTKE + + +FGS
Sbjct: 397 FDSQTKETLNTRAANFGSKFSASDAVIKKMMSSGIVEQILSWASFKQSKELKKNDGAKKT 456
Query: 453 --TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNV 510
T +PKL+DANDAG KNS CTLILTEGDSAK+LAVSGL VVGRD+YGVFPLRGKLLNV
Sbjct: 457 RLTGIPKLDDANDAGGKNSEHCTLILTEGDSAKALAVSGLSVVGRDRYGVFPLRGKLLNV 516
Query: 511 REATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLI 570
R+A+H+QI+ NAEI+ + +ILGL++ +Y E K+LRYG +MIMTDQD DGSHIKGL+
Sbjct: 517 RDASHEQIMNNAEISYIKQILGLKHGIQY---ESAKSLRYGHIMIMTDQDHDGSHIKGLL 573
Query: 571 INFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHT--YKI 627
INF+H ++P+LL++P FL EFITPIIKATK ++ FY++PE+E +KE + T + I
Sbjct: 574 INFLHAHFPSLLKIPGFLVEFITPIIKATKGKKSEVFYTMPEYENFKESLGDAGTKGWSI 633
Query: 628 KYYK 631
KYYK
Sbjct: 634 KYYK 637
Score = 132 bits (332), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 86/117 (73%), Gaps = 3/117 (2%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP++Y+PI+P+VLVNGA+GIGTGW T IPN+NPR++ DNI+R++ E+P M PWY+NF
Sbjct: 847 IEPDYYLPILPLVLVNGADGIGTGWSTSIPNYNPRDLTDNIRRLLNDEEPERMHPWYRNF 906
Query: 720 KGEID---YCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKD 773
G + G+ R+ ++G I+++ L I+EL + WTTDYK+ L+ +++ EK+
Sbjct: 907 NGSLTEEIVKGEIRYHISGAYEIVNETTLMISELPIRSWTTDYKEFLENMMNPKEKN 963
Score = 53.5 bits (127), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 10/102 (9%)
Query: 802 EEIEEVFHDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFW 861
EE+E + D ++ K QK ++ + AEG D+EA + +YDYLL M W
Sbjct: 1089 EELESLGFD-KMTKTQKVSAAID----EIAEG-DEEAADAVES----GANYDYLLSMPLW 1138
Query: 862 SLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
+LT E+ +EL+ +++ K E+ L +LW DLDA E
Sbjct: 1139 NLTQEKVDELVTEKESKEEEVAALHATTDKELWIKDLDAFEE 1180
>gi|10121865|gb|AAG13405.1|AF285159_1 topoisomerase II alpha-4 [Homo sapiens]
Length = 581
Score = 578 bits (1490), Expect = e-161, Method: Compositional matrix adjust.
Identities = 306/588 (52%), Positives = 373/588 (63%), Gaps = 118/588 (20%)
Query: 22 KKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYV 81
K + ++SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+V
Sbjct: 20 KNEDAKKRLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFV 78
Query: 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVP 141
PGLYKIFDEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+VP
Sbjct: 79 PGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVP 138
Query: 142 TMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIF 201
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIF
Sbjct: 139 ALIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIF 173
Query: 202 SSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDK 261
S+KF VET+ EYKK FKQ W DNM + E+K + +D+T ITF PDL+KFKM SLDK
Sbjct: 174 STKFTVETASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDK 233
Query: 262 DMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENV 320
D+V L+ RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE G+ +K+I+E V
Sbjct: 234 DIVALMVRRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETGNSLKVIHEQV 293
Query: 321 NPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEV----------VKK 370
N RWEV + S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++V VK
Sbjct: 294 NHRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNKGGVAVKA 353
Query: 371 KNKDL-------------------------------GC-----TIIMLFGNKFNNVKNNK 394
++L GC + L F++V
Sbjct: 354 HQRELCNGAILAHCNLRLMGSSDSPASASRVAGIAGGCHHTQLIFVFLVETGFHHVGQAG 413
Query: 395 LQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC 454
L+ + + +VKNH+WIF+N LI NPTFDSQTKENMTLQ SFGSTC
Sbjct: 414 LERLTSGDPPASASQSSGITDVKVKNHMWIFVNALIENPTFDSQTKENMTLQPKSFGSTC 473
Query: 455 ---------------------------------------------VPKLEDANDAGTKNS 469
+PKL+DANDAG +NS
Sbjct: 474 QLSEKFIKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDANDAGGRNS 533
Query: 470 IDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQ 517
+CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQ
Sbjct: 534 TECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQ 581
>gi|186510360|ref|NP_001118686.1| DNA topoisomerase 2 [Arabidopsis thaliana]
gi|332643306|gb|AEE76827.1| DNA topoisomerase 2 [Arabidopsis thaliana]
Length = 1438
Score = 577 bits (1487), Expect = e-161, Method: Compositional matrix adjust.
Identities = 326/674 (48%), Positives = 418/674 (62%), Gaps = 122/674 (18%)
Query: 14 QNGNGPS-----PKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNR 68
QN N + K + A ++E++YQKKSQLEHILLRPDTYIGS+E T+T+W+
Sbjct: 8 QNSNAANVAKAPAKSRAAAGGKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQTLWVY-- 65
Query: 69 ETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGI 128
E + M +R +TYVPGLYKIFDEILVNA DNKQRD KM+ +++ ++ E N ISV N+G G+
Sbjct: 66 EKDEMVQRPVTYVPGLYKIFDEILVNAADNKQRDAKMDSVQVVIDVEQNLISVCNSGAGV 125
Query: 129 PVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTG 188
PV H++E ++VP MIFGHLLTSSN Y+D K TG
Sbjct: 126 PVEIHQEEGIYVPEMIFGHLLTSSN-------------------------YDDNVKKTTG 160
Query: 189 GRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITF 247
GRNGYGAKL NIFS++F++ET+ + K +KQV+++NM K + P I K +++TK+TF
Sbjct: 161 GRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFENNMGKKSEPVITKCNKSENWTKVTF 220
Query: 248 TPDLTKFKMTSLDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQ 306
PDL KF MT L+ D+V L+++R +D A K VKV LNG+++PVK+F DYV LY
Sbjct: 221 KPDLKKFNMTELEDDVVALMSKRVFDIAGCLGKSVKVELNGKQIPVKSFTDYVDLYLSAA 280
Query: 307 DEDG--DPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQI 364
++ DP+ + E VN RWEV ++ S+ FQQVSFVNSIAT KGG HVD V I I
Sbjct: 281 NKSRTEDPLPRLTEKVNDRWEVCVSLSEGQFQQVSFVNSIATIKGGTHVDYVTSQITNHI 340
Query: 365 IEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWI 424
+ V KKNK+ +K VKNH+W+
Sbjct: 341 VAAVNKKNKN------------------------------------ANVKAHNVKNHLWV 364
Query: 425 FINCLIVNPTFDSQTKENMTLQKGSFGSTC------------------------------ 454
F+N LI NP FDSQTKE +TL++ SFGS C
Sbjct: 365 FVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKKVGKSGVVENLLSWADFKQNKD 424
Query: 455 -------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVF 501
V KL+DA +AG KNS CTLILTEGDSAKSLA++G V+G + GVF
Sbjct: 425 LKKSDGAKTGRVLVEKLDDAAEAGGKNSRLCTLILTEGDSAKSLALAGRSVLGNNYCGVF 484
Query: 502 PLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQ 561
PLRGKLLNVREA+ QI N EI NL KILGL+ + KY E++ +LRYG++MIMTDQD
Sbjct: 485 PLRGKLLNVREASTTQITNNKEIENLKKILGLKQNMKY---ENVNSLRYGQMMIMTDQDH 541
Query: 562 DGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATK--AREELSFYSLPEFEEWKEE 618
DGSHIKGL+INFIH WP+LL++P FL EFITPI+KAT+ ++ LSFYS+PE+EEWKE
Sbjct: 542 DGSHIKGLLINFIHSFWPSLLQVPSFLVEFITPIVKATRKGTKKVLSFYSMPEYEEWKES 601
Query: 619 TT-NWHTYKIKYYK 631
N + IKYYK
Sbjct: 602 LKGNATGWDIKYYK 615
Score = 135 bits (340), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 77/112 (68%), Gaps = 4/112 (3%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEP WY+PIIP VLVNGAEGIGTGW T IPN+NPREIV N++R++ GE +PM PWY+
Sbjct: 824 RIEPTWYMPIIPTVLVNGAEGIGTGWSTFIPNYNPREIVANVRRLLNGESMVPMDPWYRG 883
Query: 719 FKGEIDYC----GDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
FKG I+ G + + G +D+ + ITEL + +W DYK+ L +L
Sbjct: 884 FKGTIEKTASKEGGCTYTITGLYEEVDETTIRITELPIRRWNDDYKNFLQSL 935
Score = 51.6 bits (122), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 848 PDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
P +YDYLL M SLT+E+ ELL RD + + +KK P LW DL++L
Sbjct: 1113 PGSEYDYLLAMAIASLTIEKVEELLADRDKMIIAVADMKKTTPKSLWLSDLESL 1166
>gi|18369812|dbj|BAB84101.1| DNA topoisomerase II [Aspergillus fumigatus]
Length = 1495
Score = 577 bits (1487), Expect = e-161, Method: Compositional matrix adjust.
Identities = 307/661 (46%), Positives = 402/661 (60%), Gaps = 119/661 (18%)
Query: 26 PANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLY 85
PA + + YQK +QLEHI+ RPDTYIGSVE T+ MW+ + ET M+ +E++YVPGLY
Sbjct: 48 PATSTNASEKYQKLTQLEHIIKRPDTYIGSVERTTQFMWVYDSETEGMKYKEVSYVPGLY 107
Query: 86 KIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIF 145
KIFDEI+VNA DNKQ D M+ I++T+++E+ ISVWNNG+GIP+ H E ++VP +IF
Sbjct: 108 KIFDEIVVNAADNKQNDANMDEIRVTIDRESGEISVWNNGRGIPIEIHAKEGIYVPELIF 167
Query: 146 GHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF 205
GHLLTSSNY +D + KVTGGRNG+GAKLCN+FS++F
Sbjct: 168 GHLLTSSNY-------------------------DDTQKKVTGGRNGFGAKLCNVFSTEF 202
Query: 206 VVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVD 265
+ET S KK +KQ W +NMSK+ +I +D+TK+T PD KF M +D D
Sbjct: 203 TIETQDSRQKKKYKQTWTNNMSKMGKAKITDAKGEDYTKVTCKPDYAKFGMEGMDDDFEA 262
Query: 266 LITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDGDPV-KIIYEN 319
L+ RR YD A +TK V V LNG ++PV+NF+ Y+++YT +R +ED + +II +
Sbjct: 263 LVKRRVYDLAGTTK-VAVKLNGSRIPVRNFKKYMEMYTKAIRRERGEEDTNAKDEIITCS 321
Query: 320 VNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTI 379
+PRWE+ A SD F QVSFVNSIATT GG HV+ + D I ++ + VKKKNK+
Sbjct: 322 PDPRWEIGFAVSDGSFHQVSFVNSIATTSGGTHVNYIADQICARLADQVKKKNKN----- 376
Query: 380 IMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQT 439
G LKP Q++NHI+IF+N LIVNP F SQT
Sbjct: 377 ------------------------------GATLKPAQIRNHIFIFVNALIVNPAFTSQT 406
Query: 440 KENMTLQKGSFGSTCV-------------------------------------------P 456
KE +T + FGS CV P
Sbjct: 407 KEQLTTKSSQFGSKCVLEEDFYKKILRTEVMNNILHFAQAKADQLLKKTDGGRRTRMNNP 466
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL DAN AGTK+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ +
Sbjct: 467 KLVDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASFE 526
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI +N EI N+ LGLQ+ K+YT + LRYG LMIMTDQD DGSHIKGL+INF+
Sbjct: 527 QISKNQEIQNIKNFLGLQHKKEYTHT---RGLRYGHLMIMTDQDHDGSHIKGLLINFLQA 583
Query: 577 NWPTLLRLP-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYY 630
+P+LL++P FL EFITPI K K ++ SF+++PE+E WKE+ + ++ KYY
Sbjct: 584 QFPSLLKIPEFLIEFITPIAKVWKGDPKNPTKQHSFFTMPEYEAWKEDHKHDRGWEHKYY 643
Query: 631 K 631
K
Sbjct: 644 K 644
Score = 134 bits (337), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 1/114 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE Y+P++PM+L+NGA+GIGTGW + IPN+NP +IVDN+KR++ G+ PM+PW++
Sbjct: 853 KIEPEVYVPVVPMILINGADGIGTGWSSSIPNYNPEDIVDNLKRLMDGQPVKPMQPWFRG 912
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F GE+ G RF +G I D ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 913 FTGEVTALGGDRFKFSGIIKETGDKEVEITELPIRTWTQDFKDKLEEIIK-AEK 965
Score = 53.5 bits (127), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 830 AAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKA 889
E E+DE+G+ E E YDYLLGM WSLT ER +L ++ +K E++ L K +
Sbjct: 1116 VVEEEEDESGND--ETEVLSSAYDYLLGMPLWSLTHERVEKLRRQIGEKEVEIDALIKLS 1173
Query: 890 PTDLWSDDLD 899
D+W DLD
Sbjct: 1174 KEDIWKRDLD 1183
>gi|320166777|gb|EFW43676.1| DNA topoisomerase II [Capsaspora owczarzaki ATCC 30864]
Length = 1628
Score = 577 bits (1486), Expect = e-161, Method: Compositional matrix adjust.
Identities = 316/667 (47%), Positives = 404/667 (60%), Gaps = 122/667 (18%)
Query: 16 GNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMER 75
G+ S PA K++VE+ Y K + ILLRPDTYIG V T+ +W+ N E E
Sbjct: 35 GDASSANAAGPAKKLTVEETYLKLELRDQILLRPDTYIGGVATETKNLWVCNEE-GKFEN 93
Query: 76 REITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKD 135
R++++VPGL+KIFDE+LVNA DNKQRD M I++ +NQ NTISVWN+GKGIP+ H
Sbjct: 94 RDVSFVPGLFKIFDELLVNASDNKQRDSSMTTIRVDINQADNTISVWNDGKGIPIRMHTK 153
Query: 136 EKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGA 195
E ++VPT+IF HLLT S NY + K TGGRNGYGA
Sbjct: 154 ENVWVPTLIFSHLLT-------------------------SDNYTTNKKKTTGGRNGYGA 188
Query: 196 KLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSK----VTSPEIKSGSKDDFTKITFTPDL 251
KL NIFS++FVVET E K+ FKQV+ NMS+ + SP + GSK DFTKITF PDL
Sbjct: 189 KLANIFSTEFVVETQDHETKQRFKQVFTKNMSQSGQAIISPS-EGGSKGDFTKITFKPDL 247
Query: 252 TKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGD 311
++FKM LD D+V L RR YD A + +KV+LN +P+++F DYVKLY D
Sbjct: 248 SRFKMDYLDDDIVGLFRRRVYDIAGCMRGLKVYLNDNLIPIRSFVDYVKLYL----PDAP 303
Query: 312 PVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK 371
I +E V+ RWEV + + G QQVSFVN I T GG HV+ V++ I I + +K+
Sbjct: 304 LNSIAHERVSDRWEVCVTVAPDGHQQVSFVNGINTYTGGTHVNHVLELIYPTISKALKQP 363
Query: 372 NKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIV 431
K N +K KP Q+KN+I IF+N LI
Sbjct: 364 --------------KGNEIK----------------------KP-QIKNNISIFVNALID 386
Query: 432 NPTFDSQTKENMTLQKGSFGSTC------------------------------------- 454
+PTF SQ+KE ++L FGS C
Sbjct: 387 DPTFKSQSKEELSLSVKEFGSECTFSDKFNKALLSTGIVQAILDKNNEKLRKELDKISGR 446
Query: 455 -------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKL 507
+ KL+DAN+AG +NS CTLILTEGDSAK+LAVSGLG+VGRD YGVFPLRGKL
Sbjct: 447 KSSKISGIAKLDDANEAGGRNSAQCTLILTEGDSAKALAVSGLGLVGRDYYGVFPLRGKL 506
Query: 508 LNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIK 567
LNVR+A H QI EN EI +++KILGLQ++KKYT+VE LRYGRLMIMTDQD DGSHIK
Sbjct: 507 LNVRDAAHHQIRENQEIEHVIKILGLQFNKKYTSVEG---LRYGRLMIMTDQDSDGSHIK 563
Query: 568 GLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN--WHT 624
GL+INF+HH WP+LL + FL EFITPI+KATK ++ L+F+++P++++W+EE
Sbjct: 564 GLLINFLHHFWPSLLTVSGFLVEFITPIVKATKGKQVLTFFTVPQYQQWREEDDGRACKG 623
Query: 625 YKIKYYK 631
+ IKYYK
Sbjct: 624 WTIKYYK 630
Score = 136 bits (342), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 83/121 (68%), Gaps = 2/121 (1%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPEWY+PI+P+ L+NG EGIGTGW + +PN +PR++V NI+ M+ G+DP PM P+Y
Sbjct: 839 RIEPEWYMPILPLSLINGCEGIGTGWSSSVPNFSPRDVVANIRLMMAGQDPEPMCPYYNG 898
Query: 719 FKGEIDYCGDS-RFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDEVHP 777
F G I+ G + RF V G I L LEITEL +G WT YK+ L+ L+ EKD+ P
Sbjct: 899 FTGTIEPLGKADRFRVCGRITKLSATTLEITELPIGVWTQSYKEELEKLMEPNEKDKT-P 957
Query: 778 G 778
G
Sbjct: 958 G 958
Score = 60.1 bits (144), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 835 DDEAGSQTQEEEDPD-----KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKA 889
DD G+ + D D YDYLL M WSLT+E+ +LL +R K EL +L +K+
Sbjct: 1107 DDNGGADETADNDSDDIVHTNGYDYLLTMPLWSLTLEKVQQLLGERSVKEEELKVLLEKS 1166
Query: 890 PTDLWSDDLDAL 901
LWS+DLDA
Sbjct: 1167 TLTLWSEDLDAF 1178
>gi|221060064|ref|XP_002260677.1| DNA topoisomerase II [Plasmodium knowlesi strain H]
gi|193810751|emb|CAQ42649.1| DNA topoisomerase II, putative [Plasmodium knowlesi strain H]
Length = 1506
Score = 576 bits (1484), Expect = e-161, Method: Compositional matrix adjust.
Identities = 326/736 (44%), Positives = 422/736 (57%), Gaps = 175/736 (23%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
S+E+ YQKKSQ+EHILLRPDTYIGSVE T+ +W+ N+E N M ++ ITYVPGLYKIFDE
Sbjct: 6 SIEERYQKKSQIEHILLRPDTYIGSVEMHTQLLWIWNKERNRMVQKNITYVPGLYKIFDE 65
Query: 91 ILVNACDNKQRDPK-----MNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIF 145
I+VNA D K R+ + M CIKI +N+E ISV+N+G+GIPV HK+ ++VP MIF
Sbjct: 66 IIVNAADVKAREKEKSENPMTCIKIEINKEQKKISVYNDGEGIPVEIHKEMNIYVPHMIF 125
Query: 146 GHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF 205
G LLTS NY+D ED++TGGRNG+GAKL NIFS +F
Sbjct: 126 -------------------------GELLTSDNYDDAEDRITGGRNGFGAKLTNIFSKEF 160
Query: 206 VVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVD 265
VV+ S KK FK VW DNMSK + P IK+ + DF ++TF PDL KF MT +D D+
Sbjct: 161 VVQCGDSSRKKEFKMVWTDNMSKFSEPIIKNYNGKDFVRVTFKPDLAKFGMTEMDDDIES 220
Query: 266 LITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY----------------------- 302
L+ +R YD A T V+V+LNG +L +K+F+ YV LY
Sbjct: 221 LLCKRVYDLAG-TCSVRVYLNGNRLAIKDFKSYVDLYLKDNAGVSPGKGGANNNANANGN 279
Query: 303 ------TDRQDED---------GDPVKI----------------IYENVNPRWEVAIAPS 331
D Q+ D G P K I+E + RWE+ ++ +
Sbjct: 280 ADGSANQDTQNPDVSQSQEPGEGTPTKSNAANGTQNNDEEEIVKIHEKQH-RWEIVVSKT 338
Query: 332 DRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNV 390
D FQQVSFVNSI TTKGG HV+ +V+ ++ + + KNK
Sbjct: 339 DGSQFQQVSFVNSICTTKGGSHVNYIVEQLLNSLSKKANAKNK----------------- 381
Query: 391 KNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSF 450
GGM +K +KNH+W+F+NCLIVNPTFDSQTKE +T + F
Sbjct: 382 ------------------GGMEIKSGHIKNHLWVFVNCLIVNPTFDSQTKETLTTKPVKF 423
Query: 451 GSTC------------------------------------------------VPKLEDAN 462
GS C +PKLEDAN
Sbjct: 424 GSKCILSDKTINGVLKSSILSNILLWAQAKAQVELRKKMKAGSSKARERIIGIPKLEDAN 483
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG+K+S DCTLILTEGDSAK+ ++GL +VGRDKYGVFPL+GKLLNVR+A+ KQ+++N
Sbjct: 484 DAGSKHSQDCTLILTEGDSAKTSCLAGLSIVGRDKYGVFPLKGKLLNVRDASFKQLMDNK 543
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EI N+ KI+GL + K ED+K LRYG LMIMTDQD DGSHIKGL+IN IH WP+LL
Sbjct: 544 EIQNIFKIMGLDITDK--NKEDIKGLRYGSLMIMTDQDYDGSHIKGLLINMIHKFWPSLL 601
Query: 583 RLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYKVVYVTGVLLF 641
+ FL EF+TPI+K K +E SF+++ E+EEWK E+TN +KIKYYK + + F
Sbjct: 602 KHKGFLSEFVTPIVKVQKGNQEHSFFTIAEYEEWK-ESTNLVGWKIKYYKGLGTSTDKEF 660
Query: 642 KMNLHKVTSDSISMFI 657
K + + I MF+
Sbjct: 661 KQYFSDIKNHKI-MFL 675
Score = 130 bits (326), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 97/154 (62%), Gaps = 6/154 (3%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP++YIP+IP +LVNG EGIGTG+ + IPN+N ++I++NIKR I E +PM PWYK+
Sbjct: 859 KIEPKYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIIENIKRYINKEPLIPMIPWYKD 918
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDEVHPG 778
FKG I+ G + F G I +DD+ LEI EL + KWT DYK+ L+ LL + +
Sbjct: 919 FKGRIESNGKTGFETIGIIRKIDDETLEINELPIKKWTQDYKEFLEELLTDEKNQLILDY 978
Query: 779 PGRKSHPRPIAPKSYKID----DDSEEEEIEEVF 808
SH + K+D +EEE +E+VF
Sbjct: 979 IDNSSHEEICF--TIKMDPAKLRKAEEEGLEKVF 1010
Score = 46.6 bits (109), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
KDYDYLL M +SLT+E+ EL+ + +K EL IL+ +W D++ + E
Sbjct: 1142 KDYDYLLSMPIFSLTLEKVEELIAQHKEKEKELEILRNITVETMWLKDIEKVEE 1195
>gi|384493528|gb|EIE84019.1| hypothetical protein RO3G_08724 [Rhizopus delemar RA 99-880]
Length = 1330
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 318/676 (47%), Positives = 423/676 (62%), Gaps = 118/676 (17%)
Query: 9 DPDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNR 68
D ++++ + K K ++E+IYQKK+QLEHILLRPDTY+GS+E + MW+ +
Sbjct: 139 DVEMEEPAKTSTKNKTVDYEKKTIEEIYQKKTQLEHILLRPDTYVGSIEAEEQEMWVFDN 198
Query: 69 ETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGI 128
E + +++++I YVPGLYKI DEILVNA DNK RDP M+ IK+ +++ N IS+ NNG GI
Sbjct: 199 EESIIKKKKIKYVPGLYKIVDEILVNAADNKIRDPSMSYIKVKIDRAENFISIENNGSGI 258
Query: 129 PVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTG 188
P+ EHK EK++VP +IF GHLLTSSNY+D+E KVTG
Sbjct: 259 PITEHKKEKVYVPELIF-------------------------GHLLTSSNYDDDEKKVTG 293
Query: 189 GRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITF 247
GRNGYGAKLCNIFS++F+VET+ E + +KQV+++NM+ +P I S+ + +T+I+F
Sbjct: 294 GRNGYGAKLCNIFSTEFIVETADKERQLKYKQVFQNNMTVKKAPSITKNSRGEQYTRISF 353
Query: 248 TPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQD 307
PDL+KF MT LD+D LI +R YD A + V VFLNG K+PVK F+ Y +LYT +
Sbjct: 354 KPDLSKFSMTELDEDFEALIKKRVYDMAGCMEGVNVFLNGTKIPVKGFKQYCELYTKSME 413
Query: 308 EDG-DPVKIIYEN--VNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQI 364
+ K+I + N RW+V A SD F Q+SFVNSI T KGG HV+ V D IVK +
Sbjct: 414 FRALEGKKLILHDGATNERWQVCFAVSDGQFNQISFVNSICTAKGGTHVNHVADQIVKAL 473
Query: 365 IEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWI 424
+ +KK+ GNK +KPFQ+KNH+ +
Sbjct: 474 LPDAQKKS-----------GNK-------------------------NIKPFQIKNHMTL 497
Query: 425 FINCLIVNPTFDSQTKENMTLQKGSFGSTC------------------------------ 454
F+NCLI NP FDSQTKENMTL+ GSFGS+
Sbjct: 498 FVNCLIENPAFDSQTKENMTLRVGSFGSSYKLNDKFVSAISKSGIIDNIVRWVKFREEEQ 557
Query: 455 --------------VPKLEDANDAGT--KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKY 498
+PKLEDAN AG KNS CTLI+TEGDSAK+L +SGL VV RD +
Sbjct: 558 MTKADSGKMAKNLKIPKLEDANFAGVRPKNS-KCTLIITEGDSAKALVLSGLSVVKRDYW 616
Query: 499 GVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTD 558
GVFP+RGKLLNVR+A++ +I++N EI ++ ILGLQ+ KKYT+V++ LRYGRLMIMTD
Sbjct: 617 GVFPIRGKLLNVRDASNAEIMKNEEIKSIKAILGLQHGKKYTSVDE---LRYGRLMIMTD 673
Query: 559 QDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKAT--KAREELSFYSLPEFEEW 615
QD DGSHIKGL+INFI +P+LL +P FL EFITPIIK T + +E +SF+++PE+E W
Sbjct: 674 QDHDGSHIKGLLINFIDTMFPSLLDIPGFLLEFITPIIKCTHKRTKEVISFFTIPEYESW 733
Query: 616 KEETTNWHTYKIKYYK 631
E ++ KY+K
Sbjct: 734 ALEHNKKSEWEPKYFK 749
Score = 139 bits (349), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 81/107 (75%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY+PIIPMVLVNGA+GIGTGW T IPN+NP++I++NI R++ GE+ + MKPWY+ F
Sbjct: 959 IEPSWYMPIIPMVLVNGADGIGTGWSTAIPNYNPKDIIENIFRLMNGEEIVTMKPWYRGF 1018
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
KGEI+ G S++ VNG I D+ +++TEL V WT +K L+ +
Sbjct: 1019 KGEINPVGPSKYTVNGIADITDEGDIKVTELPVRMWTDTFKKYLNDM 1065
Score = 43.9 bits (102), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 826 QERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNIL 885
+++ A +DDE GS QE Y+YL + T E+ +L K+RD K E+ +
Sbjct: 1215 KKKNALVVDDDENGSAEQE----GTGYEYLFSINVRGFTKEKIQDLYKQRDKKFEEMQDI 1270
Query: 886 KKKAPTDLWSDDLDAL 901
+ P W DL+AL
Sbjct: 1271 QGTPPKTFWRRDLEAL 1286
>gi|353242005|emb|CCA73780.1| probable DNA topoisomerase II [Piriformospora indica DSM 11827]
Length = 1521
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 303/671 (45%), Positives = 404/671 (60%), Gaps = 134/671 (19%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+V + YQK SQ+EHIL RPD+YIGSVEPIT+ MW+ + E M R++ YVPG +KI DE
Sbjct: 120 TVTEQYQKLSQVEHILQRPDSYIGSVEPITQAMWVYDSENKRMVHRDVRYVPGFFKIVDE 179
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNK D M+ +K+T++ E ISV+NNG+GIP+ H+ E M++P +IFG+LLT
Sbjct: 180 ILVNAADNKVNDESMDTLKVTIDVEEGIISVYNNGRGIPIAMHETENMYIPQLIFGNLLT 239
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
SSNY +D+E K+TGGRNGYGAKL NI+S +F VET+
Sbjct: 240 SSNY-------------------------DDDEKKLTGGRNGYGAKLANIYSHEFTVETA 274
Query: 211 CSEYK----KSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVD 265
C + K +KQVW +NMS V+ P+I + +D ++T+ITF PDL +F M S+D+D +
Sbjct: 275 CRDGKGYDAAKYKQVWTNNMSNVSKPKISANPRDEEYTRITFRPDLARFHMDSIDEDTLA 334
Query: 266 LITRRAYDAAAST-----------KDVKVFLNGEKLPVKNFQDYVKLYTDRQDED----- 309
L+ RR YD A + KDVKV+LN E++ +K+F+ YV++Y ++
Sbjct: 335 LLQRRVYDMAGTMKTTNAEGKKHGKDVKVYLNNERIGIKSFKQYVEMYVSSAADNAAEQS 394
Query: 310 -GDPVK--IIYENVNPRWEVAIAPSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQII 365
VK +++E +N RWEVA SD G FQQVSF NSIAT KGG HV V D I K ++
Sbjct: 395 GAASVKQTVVHERINDRWEVAFTISDSGTFQQVSFANSIATIKGGTHVATVADQIAKSLL 454
Query: 366 EVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIF 425
V+KKNK +K Q+KNH+W+F
Sbjct: 455 AAVQKKNK------------------------------------AATVKLPQIKNHMWLF 478
Query: 426 INCLIVNPTFDSQTKENMTLQKGSFGS--------------------------------- 452
+N LI NPTFDSQTKE +TL FGS
Sbjct: 479 VNALIENPTFDSQTKETLTLPASKFGSKPTLSEDFIKRVGKTSIIDSILNWAKYKADQQI 538
Query: 453 -----------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVF 501
+ KL DAN+AG++N CTLILTEGDSAK+LAV+GL VVGRD +GVF
Sbjct: 539 KKTDGTKRSRLNGMTKLCDANNAGSRNGSACTLILTEGDSAKALAVAGLSVVGRDNFGVF 598
Query: 502 PLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQ 561
PLRGKLLNVREA+H QI++N EI N+ KI+GLQ++K Y + E +LRYGRLMIM DQD
Sbjct: 599 PLRGKLLNVREASHDQIMKNEEIQNIKKIMGLQHNKDYKSTE---SLRYGRLMIMADQDH 655
Query: 562 DGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETT 620
DGSHIKGL+INF H +P+LL+LP FL EF+TPI++ + +F+++PE+++W E
Sbjct: 656 DGSHIKGLLINFFDHFYPSLLKLPEFLVEFVTPIVRVKHGKTYKNFFTIPEYQQWAEAHA 715
Query: 621 NWHTYKIKYYK 631
+ + KYYK
Sbjct: 716 HISGWTAKYYK 726
Score = 87.8 bits (216), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 69/127 (54%), Gaps = 30/127 (23%)
Query: 645 LHKVTSDSISMFIGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMI 704
L+ +T D++ +IEPEWY+P +P+VL+NGA+GIGTGW T IPN+NP +I
Sbjct: 926 LNYLTEDNL-----KIEPEWYMPTVPLVLINGADGIGTGWSTSIPNYNPVDI-------- 972
Query: 705 RGEDPLPMKPWYKNFKGEIDYCGD-SRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTL 763
G I+ + ++ G ++D +EI+EL + KWT DYK L
Sbjct: 973 ----------------GTIEKADNKGKYTCTGIARVIDSKTVEISELPIRKWTDDYKKQL 1016
Query: 764 DTLLHGA 770
+ + GA
Sbjct: 1017 EDWVIGA 1023
Score = 46.2 bits (108), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
D+DYLLGM W+LT E+ +L ++ +L K P DLW+ DLD E
Sbjct: 1209 DFDYLLGMAIWNLTREKIEKLRANAKEQEDKLLAYLKLTPIDLWNSDLDQFLE 1261
>gi|328353447|emb|CCA39845.1| DNA topoisomerase II [Komagataella pastoris CBS 7435]
Length = 1312
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 320/690 (46%), Positives = 413/690 (59%), Gaps = 136/690 (19%)
Query: 12 VQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETN 71
V + NG + + + AN ++V YQK SQLEHIL RPDTYIGSVE W+ N+ET
Sbjct: 45 VNNSENGTT--RSSTANNVNVSDQYQKLSQLEHILKRPDTYIGSVEKHESEQWIYNKETE 102
Query: 72 HMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVV 131
MER+ ++ VPGL+KIFDEILVNA DNK RDP M I++T+ E N I V N+GKGIPV
Sbjct: 103 SMERKVVSIVPGLFKIFDEILVNAADNKIRDPSMKNIEVTIKPEENLIEVKNDGKGIPVQ 162
Query: 132 EHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRN 191
H E +++P +IFG+LLTSSNYN D++ KVTGGRN
Sbjct: 163 IHDKEHIYIPELIFGNLLTSSNYN-------------------------DDQKKVTGGRN 197
Query: 192 GYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPD 250
GYGAKLCNIFS++F+VET K + Q W NM K P IKS K ++TK++F PD
Sbjct: 198 GYGAKLCNIFSTEFIVETYDKSSGKLYTQRWSQNMGKTDKPVIKSIKKATEYTKVSFRPD 257
Query: 251 LTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDG 310
L KF MT LD+D++ ++ RR +D S +D+ V LNGEKL ++NF+ YV++Y +
Sbjct: 258 LAKFNMTELDEDILGVLRRRVFDLCGSVRDISVKLNGEKLKIRNFKQYVEMYVKALEHKN 317
Query: 311 DPVK------------------IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRH 352
DP+K I+Y+ +N RWE+A A SD F QVSFVNSIATT GG H
Sbjct: 318 DPIKTEDSSLLPPPSSSSPSQTIVYQTLNDRWEIAFAVSDSTFNQVSFVNSIATTSGGTH 377
Query: 353 VDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMA 412
V+ + D IVK+I + +K KNK K +I
Sbjct: 378 VNFIADQIVKKIEKEIKTKNK-------------------------KAMI---------- 402
Query: 413 LKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS-------------------- 452
KPFQ+KN++++FINCL+ NP F SQTKE +T + FG
Sbjct: 403 -KPFQIKNNMFLFINCLVENPAFTSQTKEQLTTRASQFGGKKTEVPDDFIKKILRTGIVD 461
Query: 453 -------------------------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAV 487
T PKLEDAN AGTK CTLILTEGDSA SLAV
Sbjct: 462 AILDIAAMNADKALKKNDGSRKNRITGYPKLEDANKAGTKEGYKCTLILTEGDSASSLAV 521
Query: 488 SGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKT 547
+GL VVGRD YGV+PLRGK+LNVREA+ QI++NAEI + +I+G Q+ K YT E++ +
Sbjct: 522 AGLAVVGRDYYGVYPLRGKMLNVREASADQIMKNAEIQAIKQIMGFQHKKNYTP-ENINS 580
Query: 548 LRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKAT-----KAR 601
LRYG +MIMTDQD DGSHIKGLIINF+ ++P LL++P FL EFITPI+K T + R
Sbjct: 581 LRYGHIMIMTDQDHDGSHIKGLIINFLESSFPGLLKVPNFLLEFITPIVKVTITSGPEKR 640
Query: 602 EELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+ + FYS+PE+E W+E+ T ++K KYYK
Sbjct: 641 KVIPFYSMPEYEAWREQNT--ESFKQKYYK 668
Score = 120 bits (302), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 76/113 (67%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PI+PM+L+NG+EGIGTGW T IP NP +IV NI+R++ G++ M PWY+ +
Sbjct: 878 VEPEWYLPIVPMLLINGSEGIGTGWSTNIPPFNPVDIVANIRRLMDGQEMEEMIPWYRGW 937
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G I +F + G I +DD+ +EITE+ WT + K+ L + G+EK
Sbjct: 938 NGSITKISADKFRMEGNIEQIDDETIEITEIPAKTWTINMKEFLLNGIAGSEK 990
Score = 49.7 bits (117), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 62/153 (40%), Gaps = 40/153 (26%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCP 911
YDYLLGM WSLT ER ++LL ++ +K +L L K + +W+ DL+ E+
Sbjct: 1172 YDYLLGMPIWSLTRERYHKLLLQKAEKEDQLTELLKLSAKQIWNKDLEVFLEE------- 1224
Query: 912 GGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAPPPTKASPVKKKKPAAKRPAPK 971
DE +AS KK PAAK+ +
Sbjct: 1225 -------------------WHAFLKEDE------------EKRASSFKKSGPAAKKKRVR 1253
Query: 972 SDSSDLSDSDGDSDFASRKKKTAAAKKAKPAKK 1004
+ + + D DF S+K KT A K P K
Sbjct: 1254 RVKKE--NDENDPDFGSKKPKTVAKKVLNPKTK 1284
>gi|326482946|gb|EGE06956.1| DNA topoisomerase II [Trichophyton equinum CBS 127.97]
Length = 1678
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 311/653 (47%), Positives = 392/653 (60%), Gaps = 121/653 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHIL RPDTYIGSVE + MW+ N T ME RE+++VPGLYKIFDEILVNA
Sbjct: 130 YQKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNA 189
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQ DP M+ I++T+++E ISVWNNG+GIPV HK E++++P +IFGHLLTSSNYN
Sbjct: 190 ADNKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTSSNYN 249
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D ++KVTGGRNGYGAKLCNIFS++F VET+ S+ K
Sbjct: 250 -------------------------DMQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQK 284
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K FK W +NMS + +I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 285 KKFKLTWTNNMSTMGKAKITECKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMA 344
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTD----RQDED----GDPVKIIYENVNPRWEVA 327
T V LNG ++P+K+F+ Y+++YT + ED D II E+ + RWE+
Sbjct: 345 G-TCGTSVKLNGTRIPIKSFKKYMEMYTKAIKAERGEDSTSASDKNDIITESPDRRWEIG 403
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
SD FQQVSFVNSIATT GG HV+ + D I ++ + +KKKNK
Sbjct: 404 FTVSDGSFQQVSFVNSIATTSGGTHVNYISDQICNKLADALKKKNK-------------- 449
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
G LK Q+KNHI++F+N IVNP F SQTKE +T +
Sbjct: 450 ---------------------AGATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTRA 488
Query: 448 GSFGSTCV-------------------------------------------PKLEDANDA 464
FGS CV PKL DAN A
Sbjct: 489 SQFGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKA 548
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
GTK+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI
Sbjct: 549 GTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEI 608
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
N+ +GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +PTLL++
Sbjct: 609 QNIKNFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKI 665
Query: 585 P-FLEEFITPIIKATKAREE-----LSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P FL EFITPI+K K + SF++LPE+EEWKE + ++ KYYK
Sbjct: 666 PGFLIEFITPIVKVWKGNPKNPTHTKSFFTLPEYEEWKEAHAHDKKWQKKYYK 718
Score = 140 bits (352), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 87/113 (76%), Gaps = 2/113 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P++L+NGA+GIGTGW T IPN+NP E+VDN+KR++ GE+ +PMKPW++ F
Sbjct: 928 IEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMAGEELVPMKPWFRGF 987
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KGE+ GD R+ +G I D+++EITEL + WT D+KD L+ ++ AEK
Sbjct: 988 KGEVTGSGD-RYKFSGIIKQTADNEVEITELPIRTWTQDFKDKLEEIIK-AEK 1038
Score = 52.8 bits (125), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 17/149 (11%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCP 911
YDYLL M WSLT ER ++L ++ DK E++ L K + DLW DLD + +
Sbjct: 1209 YDYLLSMPLWSLTQERVDKLRRQIGDKEMEVDALIKLSKEDLWRKDLDEFISEWRFQLED 1268
Query: 912 GGNRTRGLALKRQ---TRYQPSNRVLTSRDEPMVVSSGEDAP---PPTKASPVKKKKP-- 963
NR + +A + + + + +R ++ SG+D+ P K + V + +P
Sbjct: 1269 EENRRKKIASRGRRLSAKVKTGSRATAAKKRK--AGSGDDSDFDVPKVKKAAVNRVQPKG 1326
Query: 964 ------AAKRPAPKSDSSDLSDSDGDSDF 986
+ +P PK+ +S + +D DF
Sbjct: 1327 GLLDFLSKAKPKPKA-TSRVDGADDSDDF 1354
>gi|366995499|ref|XP_003677513.1| hypothetical protein NCAS_0G02740 [Naumovozyma castellii CBS 4309]
gi|342303382|emb|CCC71161.1| hypothetical protein NCAS_0G02740 [Naumovozyma castellii CBS 4309]
Length = 1412
Score = 575 bits (1482), Expect = e-160, Method: Compositional matrix adjust.
Identities = 316/669 (47%), Positives = 406/669 (60%), Gaps = 129/669 (19%)
Query: 25 TPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGL 84
T A K + E+ YQK SQLEHIL RPDTYIGSVE + W+ + ET+ M + + VPGL
Sbjct: 2 TVAVKSASER-YQKISQLEHILKRPDTYIGSVELQEQEQWIYDEETDCMVEKHVKMVPGL 60
Query: 85 YKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMI 144
+KIFDEI+VNA DNK RDP M I++T+ E N I V N+GKGIP+ H+ EK+++P +I
Sbjct: 61 FKIFDEIIVNAADNKVRDPTMKKIEVTIKPEENLIEVKNDGKGIPIEIHQKEKIYIPELI 120
Query: 145 FGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSK 204
F GHLLTSSNY+D E KVTGGRNGYGAKLCNIFS++
Sbjct: 121 F-------------------------GHLLTSSNYDDNEKKVTGGRNGYGAKLCNIFSTE 155
Query: 205 FVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDM 263
FV+ET+ + + Q W+ NMS P+I S K +TK++F PDL++F MTSLD D+
Sbjct: 156 FVLETADPKLGSKYVQKWEKNMSVCHPPKITSYKKGPSYTKVSFKPDLSRFNMTSLDNDI 215
Query: 264 VDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-------------DRQDEDG 310
+ ++ RR YD S +D+ V+LNG+ L ++NF++YV+LY D D+
Sbjct: 216 LGVMRRRVYDINGSVRDISVYLNGKSLKIRNFKNYVELYMKSLEKKKKLDAGEDASDQSN 275
Query: 311 DPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKK 370
P I+YE VN WE+A A SD FQQ+SFVNSIATT GG HV+ + D IV+++
Sbjct: 276 VPT-ILYERVNASWEIAFAVSDISFQQISFVNSIATTSGGTHVNYISDQIVRKVQ----- 329
Query: 371 KNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLI 430
D+ + +KPFQ+KN+++IFINCLI
Sbjct: 330 --------------------------------DLIKKKRKKTIKPFQIKNNMFIFINCLI 357
Query: 431 VNPTFDSQTKENMTLQKGSFGSTC------------------------------------ 454
NP F SQTKE +T + FGS C
Sbjct: 358 ENPAFTSQTKEQLTTRVKDFGSKCEVSPEYINKIMKTDFATKISEIADENEANTLKKSDG 417
Query: 455 --------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGK 506
PKLEDAN AGTK+ CTLILTEGDSA SLAV+GL VVGRD YG +PLRGK
Sbjct: 418 TRKTRITEYPKLEDANKAGTKDGYKCTLILTEGDSALSLAVAGLAVVGRDLYGCYPLRGK 477
Query: 507 LLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHI 566
+LNVREA+ QIL+NAEI + KI+GLQ+ KKY ED K+LRYG LMIMTDQD DGSHI
Sbjct: 478 MLNVREASADQILKNAEIQAIKKIMGLQHRKKY---EDTKSLRYGHLMIMTDQDHDGSHI 534
Query: 567 KGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKA---REELSFYSLPEFEEWKEETTNW 622
KGLIINF+ ++P LL +P FL EFITPIIK T R ++FY++P++E+W+EE +N
Sbjct: 535 KGLIINFLESSFPGLLDIPGFLVEFITPIIKVTITKPRRSVIAFYNMPDYEKWREEESNN 594
Query: 623 HTYKIKYYK 631
+T+K KYYK
Sbjct: 595 YTWKQKYYK 603
Score = 117 bits (294), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 75/116 (64%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+P+IPM+LVNG EGIGTGW T +P NP +IV NI+ ++ GE+ M+PW+K +
Sbjct: 813 VEPEWYLPVIPMILVNGCEGIGTGWSTNVPPFNPLDIVKNIRHLMNGEELEDMQPWFKGW 872
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDEV 775
G I+ R+ + G I + + LEITEL WT+ K+ L L G EK++
Sbjct: 873 NGSIEAIDPQRYRMYGRIEQIGPNTLEITELPARTWTSTIKEYLLLGLSGNEKNKA 928
Score = 52.8 bits (125), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
++YLLGM WSLT ER +LL ++ ++ TEL L K + +DLW++DL+
Sbjct: 1107 FEYLLGMRIWSLTRERYQKLLNQKQERETELEDLLKLSASDLWNNDLEEF 1156
>gi|326473740|gb|EGD97749.1| DNA topoisomerase II [Trichophyton tonsurans CBS 112818]
Length = 1678
Score = 575 bits (1482), Expect = e-160, Method: Compositional matrix adjust.
Identities = 311/653 (47%), Positives = 392/653 (60%), Gaps = 121/653 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHIL RPDTYIGSVE + MW+ N T ME RE+++VPGLYKIFDEILVNA
Sbjct: 130 YQKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNA 189
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQ DP M+ I++T+++E ISVWNNG+GIPV HK E++++P +IFGHLLTSSNYN
Sbjct: 190 ADNKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTSSNYN 249
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D ++KVTGGRNGYGAKLCNIFS++F VET+ S+ K
Sbjct: 250 -------------------------DMQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQK 284
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K FK W +NMS + +I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 285 KKFKLTWTNNMSTMGKAKITECKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMA 344
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTD----RQDED----GDPVKIIYENVNPRWEVA 327
T V LNG ++P+K+F+ Y+++YT + ED D II E+ + RWE+
Sbjct: 345 G-TCGTSVKLNGTRIPIKSFKKYMEMYTKAIKAERGEDSTSASDKNDIITESPDRRWEIG 403
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
SD FQQVSFVNSIATT GG HV+ + D I ++ + +KKKNK
Sbjct: 404 FTVSDGSFQQVSFVNSIATTSGGTHVNYISDQICNKLADALKKKNK-------------- 449
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
G LK Q+KNHI++F+N IVNP F SQTKE +T +
Sbjct: 450 ---------------------AGATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTRA 488
Query: 448 GSFGSTCV-------------------------------------------PKLEDANDA 464
FGS CV PKL DAN A
Sbjct: 489 SQFGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKA 548
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
GTK+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI
Sbjct: 549 GTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEI 608
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
N+ +GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +PTLL++
Sbjct: 609 QNIKNFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKI 665
Query: 585 P-FLEEFITPIIKATKAREE-----LSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P FL EFITPI+K K + SF++LPE+EEWKE + ++ KYYK
Sbjct: 666 PGFLIEFITPIVKVWKGNPKNPTHTKSFFTLPEYEEWKEAHAHDKKWQKKYYK 718
Score = 140 bits (352), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 87/113 (76%), Gaps = 2/113 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P++L+NGA+GIGTGW T IPN+NP E+VDN+KR++ GE+ +PMKPW++ F
Sbjct: 928 IEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMAGEELVPMKPWFRGF 987
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KGE+ GD R+ +G I D+++EITEL + WT D+KD L+ ++ AEK
Sbjct: 988 KGEVTGSGD-RYKFSGIIKQTADNEVEITELPICTWTQDFKDKLEEIIK-AEK 1038
Score = 52.8 bits (125), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 17/149 (11%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCP 911
YDYLL M WSLT ER ++L ++ DK E++ L K + DLW DLD + +
Sbjct: 1209 YDYLLSMPLWSLTQERVDKLRRQIGDKEMEVDALIKLSKEDLWRKDLDEFISEWRFQLED 1268
Query: 912 GGNRTRGLALKRQ---TRYQPSNRVLTSRDEPMVVSSGEDAP---PPTKASPVKKKKP-- 963
NR + +A + + + + +R ++ SG+D+ P K + V + +P
Sbjct: 1269 EENRRKKIASRGRRLSAKVKTGSRATAAKKRK--AGSGDDSDFDVPKVKKAAVNRVQPKG 1326
Query: 964 ------AAKRPAPKSDSSDLSDSDGDSDF 986
+ +P PK+ +S + +D DF
Sbjct: 1327 GLLDFLSKAKPKPKA-TSRVDGADDSDDF 1354
>gi|403218545|emb|CCK73035.1| hypothetical protein KNAG_0M01820 [Kazachstania naganishii CBS
8797]
Length = 1432
Score = 575 bits (1482), Expect = e-160, Method: Compositional matrix adjust.
Identities = 315/666 (47%), Positives = 412/666 (61%), Gaps = 127/666 (19%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYK 86
N+ S + YQK SQLEHIL RPDTYIGSVE + W+ + E + M ++++ VPGL+K
Sbjct: 4 GNEKSASERYQKISQLEHILKRPDTYIGSVEIQEQHQWIFDDEIDCMVEKQVSIVPGLFK 63
Query: 87 IFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFG 146
IFDEILVNA DNK RDP M I +++ E N I V N+GKGIP+ H EK+++P +IF
Sbjct: 64 IFDEILVNAADNKVRDPTMKRIDVSIIPEENLIEVKNDGKGIPIEIHSKEKVYIPELIF- 122
Query: 147 HLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFV 206
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS++F+
Sbjct: 123 ------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFI 158
Query: 207 VETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDMVD 265
+ET+ + K + Q W++NM+ PEI S K +TKI+F PDL++F M +LD D++
Sbjct: 159 LETADPKAGKKYIQKWENNMTTCHPPEITSYKKVSSYTKISFKPDLSRFGMENLDSDILG 218
Query: 266 LITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD-----RQDEDGDPVK------ 314
++ RR YD S DV V+LNG+ L +KNF++YV+LY RQ + G V+
Sbjct: 219 VMRRRVYDINGSVADVNVYLNGKFLKIKNFKNYVELYLKSLEKKRQLDSGQEVETDAKIP 278
Query: 315 -IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNK 373
I+YE ++ RWE+A A SD FQQ+SFVNSIATT GG HV+ +VD IV+++ +++KK+ K
Sbjct: 279 TILYEKISNRWEIAFAVSDISFQQISFVNSIATTTGGTHVNYIVDQIVRKVSDMLKKRKK 338
Query: 374 DLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNP 433
++ KPFQ+KN+++IFINCLI NP
Sbjct: 339 NI--------------------------------------KPFQIKNNMFIFINCLIENP 360
Query: 434 TFDSQTKENMTLQKGSFGSTC--------------------------------------- 454
F SQTKE +T + FGS C
Sbjct: 361 AFTSQTKEQLTTRIKDFGSRCEIPGDFVNKIMKTDLATKIFEIADENAHNQLKKSDGTRK 420
Query: 455 -----VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLN 509
PKLEDAN AGTK+S CTLILTEGDSA SLAV+GL VVGRD YG +PLRGK+LN
Sbjct: 421 SRITEYPKLEDANKAGTKDSYKCTLILTEGDSALSLAVAGLAVVGRDFYGCYPLRGKILN 480
Query: 510 VREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGL 569
VREA+ QIL+NAEI + KI+GLQ+ K Y ED KTLRYG LMIMTDQD DGSHIKGL
Sbjct: 481 VREASADQILKNAEIQAIKKIMGLQHRKNY---EDTKTLRYGHLMIMTDQDHDGSHIKGL 537
Query: 570 IINFIHHNWPTLLRLP-FLEEFITPIIKA--TKAREE-LSFYSLPEFEEWKEETTNWHTY 625
IINF+ ++P LL +P FL EFITPI+K TK R++ ++FY++P++E+W+ E + T+
Sbjct: 538 IINFLESSFPGLLDIPGFLVEFITPIVKVTITKPRKQVIAFYNIPDYEKWRLEEAHKFTW 597
Query: 626 KIKYYK 631
K KYYK
Sbjct: 598 KQKYYK 603
Score = 112 bits (281), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 69/113 (61%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+P+IPM+LVNG EGIGTGW T IP NP +IV NI ++ GED M PWY+ +
Sbjct: 813 VEPEWYLPVIPMLLVNGGEGIGTGWSTNIPPFNPLDIVKNIGHLMNGEDLEEMHPWYRGW 872
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G ++ R+ + G I LEITEL WTT K+ L L G E+
Sbjct: 873 TGSLEKTEPQRYRMYGRIEQTGPCTLEITELPAKTWTTTIKEHLLLGLSGNER 925
Score = 54.7 bits (130), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 846 EDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
ED ++YLLGM WSLT ER N LLK++ +K EL L K + D+W+ DL+
Sbjct: 1107 EDEFGTFEYLLGMRIWSLTKERYNRLLKQKQEKEVELEALLKLSAKDIWNTDLEEF 1162
>gi|402466606|gb|EJW02059.1| hypothetical protein EDEG_03483 [Edhazardia aedis USNM 41457]
Length = 1226
Score = 575 bits (1481), Expect = e-160, Method: Compositional matrix adjust.
Identities = 318/701 (45%), Positives = 412/701 (58%), Gaps = 173/701 (24%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E+ YQKKSQ+EHILLRPDTYIGS+E T++++++ + + ++ I YVPGL+KIFDE
Sbjct: 5 TIEEQYQKKSQIEHILLRPDTYIGSIEHETQSLYIL--DGARIAQKSINYVPGLFKIFDE 62
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
+LVNA DNK RD M+ +K+ ++ + ISV N+GKGIPV HK EK++VP +IF
Sbjct: 63 VLVNAADNKIRDSNMSYVKVIIDSASCVISVENDGKGIPVAVHKTEKVYVPELIF----- 117
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
GHLLTSSNYND+E K+TGGRNGYGAKLCNIFSS FVVET
Sbjct: 118 --------------------GHLLTSSNYNDKEKKMTGGRNGYGAKLCNIFSSVFVVETR 157
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEI------------------------------------ 234
+ ++Q + DNM + PEI
Sbjct: 158 --DKHLFYRQTFYDNMGRKDEPEIVDLRGKSDDEVCDITRCVFFKENKREKNKDVDSNGN 215
Query: 235 ---------------KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTK 279
K DFT+ITF PDL KF M+SLD D++ L+++R YD + + K
Sbjct: 216 GSSFNYVRESAKRAKKGAITSDFTRITFKPDLKKFNMSSLDADIIALLSKRVYDLSGTVK 275
Query: 280 DVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYEN-VNPRWEVAIAPSDRGFQQV 338
D+ VFLN ++ K F+ Y KLY + DE + Y + VN RWE+ + S+ F QV
Sbjct: 276 DISVFLNNREIKSKGFKSYCKLYFENADE-----HVFYHSVVNDRWEIVFSNSEDQFSQV 330
Query: 339 SFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMA 398
SFVNSI T+KGG HV+ V+D I++ I E +KKK K
Sbjct: 331 SFVNSICTSKGGTHVNHVLDQIIEPIAEHIKKKEK------------------------- 365
Query: 399 KTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTCV--- 455
G+ +KPFQ+K+ I+IFINCLI NP+FDSQTKEN+TL FGS CV
Sbjct: 366 -----------GLTIKPFQIKSSIFIFINCLIENPSFDSQTKENLTLNPKKFGSKCVPID 414
Query: 456 ------------------------------------------PKLEDANDAGTKNSIDCT 473
PKL+DAN AGT+ S CT
Sbjct: 415 DIIKQILRNGSFIEKIVGFARAKQSAQLKKTDGTKTTRLSGIPKLDDANMAGTRQSSKCT 474
Query: 474 LILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGL 533
LILTEGDSAK+LAVSGL VVGRD YGVFPLRGKLLNVREA+HKQI+EN+EIN + KI+GL
Sbjct: 475 LILTEGDSAKALAVSGLSVVGRDFYGVFPLRGKLLNVREASHKQIMENSEINAIKKIVGL 534
Query: 534 QYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL-PFLEEFIT 592
Q+ K Y +D+ +LRYG +MIMTDQD DGSHIKGL+INF+ H +P+LLR+ FL+ FIT
Sbjct: 535 QHGKAY---DDVASLRYGHIMIMTDQDHDGSHIKGLLINFLDHFFPSLLRIKSFLQVFIT 591
Query: 593 PIIKATK--AREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
PI++ +K A+ + F++LPEF +W+ ET YKIKYYK
Sbjct: 592 PIVRVSKKNAQGTIDFFTLPEFYKWQAETPGSEQYKIKYYK 632
Score = 89.0 bits (219), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 56/79 (70%), Gaps = 5/79 (6%)
Query: 645 LHKVTSDSISMFIGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMI 704
L+ ++ D+I+ +EPE+Y+PIIPMVLVNG EGIGTGW T IPN+N +I+ NI++++
Sbjct: 832 LNYLSEDNIT-----VEPEFYVPIIPMVLVNGPEGIGTGWSTTIPNYNVVDIIANIRKLM 886
Query: 705 RGEDPLPMKPWYKNFKGEI 723
E + P+YK F G I
Sbjct: 887 NNETQTNLVPFYKGFTGSI 905
Score = 53.9 bits (128), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 38/55 (69%)
Query: 849 DKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
+K YDYLL M SLT+E+ +L +++++K + NIL+KK DLW+DDL+ +
Sbjct: 1148 EKSYDYLLNMPLLSLTLEKIQKLNQEKEEKNLQYNILRKKTNKDLWNDDLNEFEQ 1202
>gi|315047873|ref|XP_003173311.1| hypothetical protein MGYG_03483 [Arthroderma gypseum CBS 118893]
gi|311341278|gb|EFR00481.1| hypothetical protein MGYG_03483 [Arthroderma gypseum CBS 118893]
Length = 1672
Score = 574 bits (1479), Expect = e-160, Method: Compositional matrix adjust.
Identities = 310/651 (47%), Positives = 386/651 (59%), Gaps = 119/651 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHIL RPDTYIGSVE + MW+ N T ME RE+++VPGLYKIFDEILVNA
Sbjct: 130 YQKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNA 189
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQ DP M+ I++T+++E ISVWNNG+GIPV HK E +++P +IFGHLLTSSNYN
Sbjct: 190 ADNKQNDPSMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEHIYIPELIFGHLLTSSNYN 249
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D ++KVTGGRNGYGAKLCNIFS++F VET+ S K
Sbjct: 250 -------------------------DMQEKVTGGRNGYGAKLCNIFSNEFTVETADSSNK 284
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K FK W NMS + +I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 285 KKFKLTWTKNMSTMGKAKITESKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMA 344
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDR------QDEDGDPVKIIYENVNPRWEVAIA 329
T V LNG ++PVK+F+ Y+++YT +D D II E+ + RWE+
Sbjct: 345 G-TCGTTVKLNGTRIPVKSFKKYMEMYTKAIKTERGEDPTSDKNDIITESPDRRWEIGFT 403
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ + D I ++ + +KKKNK
Sbjct: 404 VSDGSFQQVSFVNSIATTSGGTHVNYISDQICNKLADALKKKNK---------------- 447
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LK Q+KNHI++F+N IVNP F SQTKE +T +
Sbjct: 448 -------------------TGATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTRSSQ 488
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS C+ PKL DAN AGT
Sbjct: 489 FGSKCIVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAGT 548
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI N
Sbjct: 549 KEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQN 608
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ +GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +PTLL++P
Sbjct: 609 IKNFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKIPG 665
Query: 586 FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K SF++LPE+EEWKE + ++ KYYK
Sbjct: 666 FLIEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKEAHAHDKKWQKKYYK 716
Score = 136 bits (342), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 87/113 (76%), Gaps = 2/113 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P++L+NGA+GIGTGW T IPN+NP ++VDN+KR++ G++ +PMKPW++ F
Sbjct: 926 IEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDNLKRLMAGDELVPMKPWFRGF 985
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KGE+ GD R+ +G I D+++EI+EL + WT D+KD L+ ++ AEK
Sbjct: 986 KGEVTGSGD-RYKFSGIIKQTGDNEVEISELPIRTWTQDFKDKLEEIIK-AEK 1036
Score = 52.0 bits (123), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 76/167 (45%), Gaps = 21/167 (12%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCP 911
YDYLL M WSLT ER +L ++ DK E++ L K DLW DL+ + +
Sbjct: 1206 YDYLLSMPLWSLTQERVEKLRRQIGDKEMEVDALIKLTKEDLWKKDLEEFITEWRFQLED 1265
Query: 912 GGNRTR---GLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAP---PPTKASPVKKKKP-- 963
NR + G + ++ + +R ++ SG+D+ P K + V + +P
Sbjct: 1266 EENRRKKIAGRGRRLSSKVKTGSRATAAKKRK--AGSGDDSDFDVPKGKKATVNRVQPKG 1323
Query: 964 ------AAKRPAPKS----DSSDLSDSDGDSDFASRKKKTAAAKKAK 1000
+P PK+ D +D SD D + + + K AAK+AK
Sbjct: 1324 GLLDYLGKSKPKPKTTSHVDGADDSD-DFEDEVMPKPKSRGAAKEAK 1369
>gi|327309598|ref|XP_003239490.1| DNA topoisomerase II [Trichophyton rubrum CBS 118892]
gi|326459746|gb|EGD85199.1| DNA topoisomerase II [Trichophyton rubrum CBS 118892]
Length = 1674
Score = 573 bits (1476), Expect = e-160, Method: Compositional matrix adjust.
Identities = 310/653 (47%), Positives = 390/653 (59%), Gaps = 121/653 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHIL RPDTYIGSVE + MW+ N T ME RE+++VPGLYKIFDEILVNA
Sbjct: 130 YQKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNA 189
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQ DP M+ I++T+++E ISVWNNG+GIPV HK E++++P +IFGHLLTSSNYN
Sbjct: 190 ADNKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTSSNYN 249
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D ++KVTGGRNGYGAKLCNIFS +F VET+ S+ K
Sbjct: 250 -------------------------DMQEKVTGGRNGYGAKLCNIFSKEFTVETADSKQK 284
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K FK W +NMS + +I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 285 KKFKLTWTNNMSTMGKAKITECKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMA 344
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTD--RQDEDGDPVK------IIYENVNPRWEVA 327
T V LNG ++P+K+F+ Y+++YT + + DP II E+ + RWE+
Sbjct: 345 G-TCGTAVKLNGTRIPIKSFKKYMEMYTKAIKAERGEDPTSASDKNDIITESPDRRWEIG 403
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
SD FQQVSFVNSIATT GG HV+ + D I ++ + +KKKNK
Sbjct: 404 FTVSDGSFQQVSFVNSIATTSGGTHVNYISDQICNKLADALKKKNK-------------- 449
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
G LK Q+KNHI++F+N IVNP F SQTKE +T +
Sbjct: 450 ---------------------TGATLKATQIKNHIFLFVNSQIVNPAFTSQTKEQLTTRP 488
Query: 448 GSFGSTCV-------------------------------------------PKLEDANDA 464
FGS CV PKL DAN A
Sbjct: 489 SQFGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKA 548
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
GTK+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI
Sbjct: 549 GTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEI 608
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
N+ +GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +PTLL++
Sbjct: 609 QNIKNFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKI 665
Query: 585 P-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P FL EFITPI+K K SF++LPE+EEWKE + ++ KYYK
Sbjct: 666 PGFLIEFITPIVKVWKGDPKNPTHTKSFFTLPEYEEWKEAHAHDKKWQKKYYK 718
Score = 140 bits (352), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 87/113 (76%), Gaps = 2/113 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P++L+NGA+GIGTGW T IPN+NP E+VDN+KR++ GE+ +PMKPW++ F
Sbjct: 928 IEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMAGEELVPMKPWFRGF 987
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KGE+ GD R+ +G I D+++EITEL + WT D+KD L+ ++ AEK
Sbjct: 988 KGEVTGSGD-RYKFSGIIKQTGDNEVEITELPIRTWTQDFKDKLEEIIK-AEK 1038
Score = 50.1 bits (118), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
YDYLL M WSLT ER ++L ++ DK E++ L K DLW DLD
Sbjct: 1209 YDYLLSMPLWSLTQERVDKLRRQIGDKEMEVDTLIKLTKEDLWRKDLD 1256
>gi|50305715|ref|XP_452818.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641951|emb|CAH01669.1| KLLA0C13838p [Kluyveromyces lactis]
Length = 1435
Score = 572 bits (1475), Expect = e-160, Method: Compositional matrix adjust.
Identities = 316/668 (47%), Positives = 400/668 (59%), Gaps = 133/668 (19%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+V + YQK SQLEHIL RPDTYIGSVE W+ + T+ M + + VPGL+KIFDE
Sbjct: 6 TVSERYQKISQLEHILKRPDTYIGSVEVQESQQWIHDETTDCMIEKTVNIVPGLFKIFDE 65
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNK RDP M I + +NQE NTI V N+GKGIPV H E +++P +IF
Sbjct: 66 ILVNAADNKVRDPSMKKIDVVINQEENTIEVKNDGKGIPVEIHDKEGIYIPELIF----- 120
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
GHLLTSSNY+D+E KVTGGRNGYGAKLCNIFS++F++ET+
Sbjct: 121 --------------------GHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETA 160
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITR 269
+ Q W++NMS P+I S K +TK+ F PDL +F M LD D+V ++ R
Sbjct: 161 DPSRGHKYIQNWENNMSTCHPPKITSYKKGPSYTKVIFKPDLQRFGMDKLDDDIVGVMRR 220
Query: 270 RAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT--------DRQDEDGDPVK------- 314
R YD S +DV V LNG+ L ++NF++YV+LY +R E P +
Sbjct: 221 RVYDINGSVRDVNVSLNGKALKIRNFKNYVELYLKSLEKIKLNRLRESSTPDEPMQEPTK 280
Query: 315 ---IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK 371
I+YE +N RWEVA A S+ FQQ+SFVNSIATT GG HV+ V D I+K++ + +KK+
Sbjct: 281 IPTILYERINDRWEVAFAVSENSFQQISFVNSIATTSGGTHVNYVTDQIIKKVSDRLKKQ 340
Query: 372 NKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIV 431
K +KPFQ+KN+++IFINCLI
Sbjct: 341 KK--------------------------------------TIKPFQIKNNMFIFINCLIE 362
Query: 432 NPTFDSQTKENMTLQKGSFGSTC------------------------------------- 454
NP F SQTKE +T + FGS C
Sbjct: 363 NPAFTSQTKEQLTTRVKDFGSKCEVPSEFINKIMKTDLATKIFEIADENAHKQLKKTDGS 422
Query: 455 -------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKL 507
PKLEDAN AGTK CTL+LTEGDSA SLAV+GL VVGRD YG FPLRGK+
Sbjct: 423 RKNRITEYPKLEDANMAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCFPLRGKM 482
Query: 508 LNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIK 567
LNVREAT QI +NAEI + KI+GLQ+ K+Y ED TLRYG +MIMTDQD DGSHIK
Sbjct: 483 LNVREATPDQISKNAEIQAIKKIMGLQHKKRY---EDTTTLRYGHIMIMTDQDHDGSHIK 539
Query: 568 GLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAR---EELSFYSLPEFEEWKEETTNWH 623
GLIINF+ ++P LL +P FL EFITPIIK T +R E +SFY++P++E+W+EE ++ +
Sbjct: 540 GLIINFLESSFPGLLDIPGFLIEFITPIIKITISRPKKETISFYNMPDYEKWREEESHKY 599
Query: 624 TYKIKYYK 631
T+K KYYK
Sbjct: 600 TWKQKYYK 607
Score = 121 bits (304), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 80/118 (67%), Gaps = 2/118 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+P+IPMVLVNG EGIGTGW T IP NP +IV+N+KR+++GE+ M PWY+ +
Sbjct: 817 VEPEWYLPVIPMVLVNGTEGIGTGWSTNIPPFNPMDIVNNVKRLMKGEEMEQMAPWYRGW 876
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDEVHP 777
+G ++ ++ G I +D++ LEITEL WT+ K+ L LL + D+V P
Sbjct: 877 QGSLEKIDPQKYRTYGRIEQIDENTLEITELPPKTWTSVIKEHL--LLGLSGNDKVKP 932
Score = 55.8 bits (133), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
+YDYLLGM W+LT ER +L+K+ +K TEL L K + DLW DLD E
Sbjct: 1119 NYDYLLGMKIWALTKERYEKLMKQMQEKQTELERLLKLSAKDLWEIDLDDFVE 1171
>gi|302500519|ref|XP_003012253.1| hypothetical protein ARB_01513 [Arthroderma benhamiae CBS 112371]
gi|291175810|gb|EFE31613.1| hypothetical protein ARB_01513 [Arthroderma benhamiae CBS 112371]
Length = 1680
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 309/653 (47%), Positives = 391/653 (59%), Gaps = 121/653 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHIL RPDTYIGSVE + MW+ N T ME RE+++VPGLYKIFDEILVNA
Sbjct: 130 YQKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNA 189
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQ DP M+ I++T+++E ISVWNNG+GIPV HK E++++P +IFGHLLTSSNYN
Sbjct: 190 ADNKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTSSNYN 249
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D ++KVTGGRNGYGAKLCNIFS++F VET+ S+ K
Sbjct: 250 -------------------------DMQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQK 284
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K FK W +NMS + +I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 285 KKFKLTWTNNMSTMGKAKITECKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMA 344
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTD--RQDEDGDPVK------IIYENVNPRWEVA 327
T V LNG ++P+K+F+ Y+++YT + + DP II E+ + RWE+
Sbjct: 345 G-TCGTAVKLNGTRIPIKSFKKYMEMYTKAIKAERGEDPTSASDKNDIITESPDRRWEIG 403
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
SD FQQVSFVNSIATT GG HV+ + D I ++ + +KKKNK
Sbjct: 404 FTVSDGSFQQVSFVNSIATTSGGTHVNYISDQICNKLADALKKKNK-------------- 449
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
G LK Q+KNHI++F+N IVNP F SQTKE +T +
Sbjct: 450 ---------------------TGATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTRP 488
Query: 448 GSFGSTCV-------------------------------------------PKLEDANDA 464
FGS CV PKL DAN A
Sbjct: 489 SQFGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKA 548
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
GTK+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI
Sbjct: 549 GTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEI 608
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
N+ +GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +PTLL++
Sbjct: 609 QNIKNFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKI 665
Query: 585 P-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P FL EFITPI+K K SF+++PE+EEWKE + ++ KYYK
Sbjct: 666 PGFLIEFITPIVKVWKGDPKNPTHSKSFFTIPEYEEWKEAHAHDKKWQKKYYK 718
Score = 139 bits (350), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 87/113 (76%), Gaps = 2/113 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P++L+NGA+GIGTGW T IPN+NP E+VDN+KR++ GE+ +PMKPW++ F
Sbjct: 928 IEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMVGEELVPMKPWFRGF 987
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KGE+ GD R+ +G I D+++EITEL + WT D+KD L+ ++ AEK
Sbjct: 988 KGEVTGSGD-RYKFSGIIKQTADNEVEITELPIRTWTQDFKDKLEEIIK-AEK 1038
Score = 56.6 bits (135), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 23/171 (13%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCP 911
YDYLL M WSLT ER ++L ++ DK E++ L K DLW DLD + +
Sbjct: 1209 YDYLLSMPLWSLTQERVDKLRRQIGDKEMEVDALIKLTKEDLWRKDLDEFISEWRFQLED 1268
Query: 912 GGNRTRGLALKRQ---TRYQPSNRVLTSRDEPMVVSSGEDAP---PPTKASPVKKKKP-- 963
NR + +A + + ++ + +R ++ SG+D+ P K + V + +P
Sbjct: 1269 EDNRRKKIASRGRRLSSKVKTGSRATAAKKRK--AGSGDDSDFDVPKGKKATVNRVQPKG 1326
Query: 964 ------AAKRPAPKSDSSDLSDSDGDSDFAS------RKKKTAAAKKAKPA 1002
+ +P PK+ +S + +D DF + + TA KAKPA
Sbjct: 1327 GLLDFLSKAKPKPKA-TSRVDGADDSDDFEDEVMPKPKSRGTAKEAKAKPA 1376
>gi|302659966|ref|XP_003021668.1| hypothetical protein TRV_04248 [Trichophyton verrucosum HKI 0517]
gi|291185576|gb|EFE41050.1| hypothetical protein TRV_04248 [Trichophyton verrucosum HKI 0517]
Length = 1680
Score = 572 bits (1474), Expect = e-159, Method: Compositional matrix adjust.
Identities = 309/653 (47%), Positives = 390/653 (59%), Gaps = 121/653 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHIL RPDTYIGSVE + MW+ N T ME RE+++VPGLYKIFDEILVNA
Sbjct: 130 YQKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNA 189
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQ DP M+ I++T+++E ISVWNNG+GIPV HK E+ ++P +IFGHLLTSSNYN
Sbjct: 190 ADNKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQTYIPELIFGHLLTSSNYN 249
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D ++KVTGGRNGYGAKLCNIFS++F VET+ S+ K
Sbjct: 250 -------------------------DMQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQK 284
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K FK W +NMS + +I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 285 KKFKLTWTNNMSTMGKAKITECKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMA 344
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTD--RQDEDGDPVK------IIYENVNPRWEVA 327
T V LNG ++P+K+F+ Y+++YT + + DP II E+ + RWE+
Sbjct: 345 G-TCGTAVKLNGTRIPIKSFKKYMEMYTKAIKAERGEDPTSASDKNDIITESPDRRWEIG 403
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
SD FQQVSFVNSIATT GG HV+ + D I ++ + +KKKNK
Sbjct: 404 FTVSDGSFQQVSFVNSIATTSGGTHVNYISDQICNKLADALKKKNK-------------- 449
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
G LK Q+KNHI++F+N IVNP F SQTKE +T +
Sbjct: 450 ---------------------TGATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTRP 488
Query: 448 GSFGSTCV-------------------------------------------PKLEDANDA 464
FGS CV PKL DAN A
Sbjct: 489 SQFGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKA 548
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
GTK+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI
Sbjct: 549 GTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEI 608
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
N+ +GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +PTLL++
Sbjct: 609 QNIKNFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKI 665
Query: 585 P-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P FL EFITPI+K K SF+++PE+EEWKE + ++ KYYK
Sbjct: 666 PGFLIEFITPIVKVWKGDPKNPTHSKSFFTIPEYEEWKEAHAHDKKWQKKYYK 718
Score = 139 bits (351), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 87/113 (76%), Gaps = 2/113 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P++L+NGA+GIGTGW T IPN+NP E+VDN+KR++ GE+ +PMKPW++ F
Sbjct: 928 IEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMVGEELVPMKPWFRGF 987
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KGE+ GD R+ +G I D+++EITEL + WT D+KD L+ ++ AEK
Sbjct: 988 KGEVSGSGD-RYKFSGIIKQTADNEVEITELPIRTWTQDFKDKLEEIIK-AEK 1038
Score = 52.0 bits (123), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 17/149 (11%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCP 911
YDYLL M WSLT ER ++L ++ DK E++ L K DLW DLD + +
Sbjct: 1209 YDYLLSMPLWSLTQERVDKLRRQIGDKEMEVDALIKLTKEDLWRKDLDEFISEWRFQLED 1268
Query: 912 GGNRTRGLALKRQ---TRYQPSNRVLTSRDEPMVVSSGEDAP---PPTKASPVKKKKP-- 963
NR + +A + + ++ + +R ++ SG+D+ P K + V + +P
Sbjct: 1269 EDNRRKKIASRGRRLSSKVKTGSRATAAKKRK--AGSGDDSDFDVPKGKKATVNRIQPKG 1326
Query: 964 ------AAKRPAPKSDSSDLSDSDGDSDF 986
+ +P PK+ +S + +D DF
Sbjct: 1327 GLLDFLSKAKPKPKA-TSRVDGADDSDDF 1354
>gi|50291033|ref|XP_447949.1| hypothetical protein [Candida glabrata CBS 138]
gi|51338747|sp|O93794.2|TOP2_CANGA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
II
gi|49527260|emb|CAG60900.1| unnamed protein product [Candida glabrata]
Length = 1406
Score = 571 bits (1472), Expect = e-159, Method: Compositional matrix adjust.
Identities = 313/657 (47%), Positives = 407/657 (61%), Gaps = 127/657 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEHIL RPDTYIGSVE + W+ + ET+ M + + VPGL+KIFDEILVNA
Sbjct: 11 YQKISQLEHILKRPDTYIGSVEIQEQEQWIYDEETDCMIDKTVNIVPGLFKIFDEILVNA 70
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP M I +T+N E N I V N+GKGIP+ H+ EK+++P +IFGHLLTSSNY+
Sbjct: 71 ADNKVRDPSMKRIDVTINPEENFIEVRNDGKGIPIEIHEKEKIYIPELIFGHLLTSSNYD 130
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D +E KVTGGRNGYGAKLCNIFS++F +ET+ +
Sbjct: 131 D-------------------------DEKKVTGGRNGYGAKLCNIFSTEFTLETADPKNG 165
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
+ + Q W++NM+ P+I S K +TK+ F PDL++F M SLD D++ ++ RR YD
Sbjct: 166 RKYVQTWENNMNVCHPPKITSYKKGPSYTKVAFKPDLSRFGMESLDSDILGVMRRRVYDI 225
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLY---------TDRQDEDGDPVK---IIYENVNP 322
S +DV V+LNG+ L ++NF++YV+LY D + D P I+YE V+
Sbjct: 226 NGSVRDVNVYLNGKPLKIRNFKNYVELYLKSLEKMRKMDNGESDTTPSNIPTILYERVSD 285
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RWE+A A SD F+QVSFVNSIATT GG HV+ + D IV+++ +++KKK K+
Sbjct: 286 RWEIAFAVSDISFKQVSFVNSIATTTGGTHVNYIADQIVRKVSDILKKKKKN-------- 337
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
+KP+Q+KN+++IFINCLI NP F SQTKE
Sbjct: 338 ------------------------------IKPYQIKNNMFIFINCLIENPAFTSQTKEQ 367
Query: 443 MTLQKGSFGSTC--------------------------------------------VPKL 458
+T + FGS C PKL
Sbjct: 368 LTTRVKDFGSRCDISSDYINKIMKTDLATKIFEIADENANNALKKSDGSRKSRITDYPKL 427
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
EDAN AGTK+ CTLILTEGDSA SLAV+GL VVGRD YG +PLRGK+LNVREAT QI
Sbjct: 428 EDANKAGTKDGYKCTLILTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREATADQI 487
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNW 578
L+NAEI + KI+GLQ+ KKY ED K+LRYG LMIMTDQD DGSHIKGLIINFI ++
Sbjct: 488 LKNAEIQAIKKIMGLQHRKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIINFIETSF 544
Query: 579 PTLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P LL +P FL EFITPI+K T ++ +SF++LP++E+W+EE ++ +++K KYYK
Sbjct: 545 PGLLDIPGFLIEFITPIVKVTITKPIKKVISFFNLPDYEKWREEESHKYSWKQKYYK 601
Score = 112 bits (281), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 74/113 (65%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+P++PMVL+NGAEGIGTGW T IP NP ++V+NI+ ++ E+ M PW++ +
Sbjct: 811 VEPEWYLPVVPMVLINGAEGIGTGWSTSIPPFNPLDVVNNIRHLLNDEEMDDMHPWFRGW 870
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G ++ R+ + G I + + LEITEL WT+ K+ L L G+EK
Sbjct: 871 TGTMEKIESQRYRMYGRIEQVGPNTLEITELPARTWTSTIKEHLLLGLGGSEK 923
Score = 55.8 bits (133), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
Y+YLLG+ WSLT ER +LLK++ +K TEL L K + DLW++DLD
Sbjct: 1113 YEYLLGLKIWSLTKERYEKLLKQKQEKETELENLLKLSAKDLWNNDLD 1160
>gi|3786306|dbj|BAA33955.1| TopoisomeraseII [Candida glabrata]
Length = 1406
Score = 571 bits (1472), Expect = e-159, Method: Compositional matrix adjust.
Identities = 313/657 (47%), Positives = 407/657 (61%), Gaps = 127/657 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEHIL RPDTYIGSVE + W+ + ET+ M + + VPGL+KIFDEILVNA
Sbjct: 11 YQKISQLEHILKRPDTYIGSVEIQEQEQWIYDEETDCMIDKTVNIVPGLFKIFDEILVNA 70
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP M I +T+N E N I V N+GKGIP+ H+ EK+++P +IFGHLLTSSNY+
Sbjct: 71 ADNKVRDPSMKRIDVTINPEENFIEVRNDGKGIPIEIHEKEKIYIPELIFGHLLTSSNYD 130
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D +E KVTGGRNGYGAKLCNIFS++F +ET+ +
Sbjct: 131 D-------------------------DEKKVTGGRNGYGAKLCNIFSTEFTLETADPKNG 165
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
+ + Q W++NM+ P+I S K +TK+ F PDL++F M SLD D++ ++ RR YD
Sbjct: 166 RKYVQTWENNMNVCHPPKITSYKKVPSYTKVAFKPDLSRFGMESLDSDILGVMRRRVYDI 225
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLY---------TDRQDEDGDPVK---IIYENVNP 322
S +DV V+LNG+ L ++NF++YV+LY D + D P I+YE V+
Sbjct: 226 NGSVRDVNVYLNGKPLKIRNFKNYVELYLKSLEKMRKMDNGESDTTPSNIPTILYERVSD 285
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RWE+A A SD F+QVSFVNSIATT GG HV+ + D IV+++ +++KKK K+
Sbjct: 286 RWEIAFAVSDISFKQVSFVNSIATTTGGTHVNYIADQIVRKVSDILKKKKKN-------- 337
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
+KP+Q+KN+++IFINCLI NP F SQTKE
Sbjct: 338 ------------------------------IKPYQIKNNMFIFINCLIENPAFTSQTKEQ 367
Query: 443 MTLQKGSFGSTC--------------------------------------------VPKL 458
+T + FGS C PKL
Sbjct: 368 LTTRVKDFGSRCDISSDYINKIMKTDLATKIFEIADENANNALKKSDGSRKSRITDYPKL 427
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
EDAN AGTK+ CTLILTEGDSA SLAV+GL VVGRD YG +PLRGK+LNVREAT QI
Sbjct: 428 EDANKAGTKDGYKCTLILTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREATADQI 487
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNW 578
L+NAEI + KI+GLQ+ KKY ED K+LRYG LMIMTDQD DGSHIKGLIINFI ++
Sbjct: 488 LKNAEIQAIKKIMGLQHRKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIINFIETSF 544
Query: 579 PTLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P LL +P FL EFITPI+K T ++ +SF++LP++E+W+EE ++ +++K KYYK
Sbjct: 545 PGLLDIPGFLIEFITPIVKVTITKPIKKVISFFNLPDYEKWREEESHKYSWKQKYYK 601
Score = 112 bits (281), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 74/113 (65%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+P++PMVL+NGAEGIGTGW T IP NP ++V+NI+ ++ E+ M PW++ +
Sbjct: 811 VEPEWYLPVVPMVLINGAEGIGTGWSTSIPPFNPLDVVNNIRHLLNDEEMDDMHPWFRGW 870
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G ++ R+ + G I + + LEITEL WT+ K+ L L G+EK
Sbjct: 871 TGTMEKIESQRYRMYGRIEQVGPNTLEITELPARTWTSTIKEHLLLGLGGSEK 923
Score = 55.8 bits (133), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
Y+YLLG+ WSLT ER +LLK++ +K TEL L K + DLW++DLD
Sbjct: 1113 YEYLLGLKIWSLTKERYEKLLKQKQEKETELENLLKLSAKDLWNNDLD 1160
>gi|297831176|ref|XP_002883470.1| hypothetical protein ARALYDRAFT_898932 [Arabidopsis lyrata subsp.
lyrata]
gi|297329310|gb|EFH59729.1| hypothetical protein ARALYDRAFT_898932 [Arabidopsis lyrata subsp.
lyrata]
Length = 1432
Score = 570 bits (1470), Expect = e-159, Method: Compositional matrix adjust.
Identities = 326/672 (48%), Positives = 417/672 (62%), Gaps = 120/672 (17%)
Query: 14 QNGNGPSPKK--KTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETN 71
QN N + K + A ++E++YQKKSQLEHILLRPDTYIGS+E T+T+W+ E +
Sbjct: 8 QNSNNANVAKAPRGAAAGKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQTLWVY--EKD 65
Query: 72 HMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVV 131
M R +TYVPGLYKIFDEILVNA DNKQRDP M+ +++ ++ E N ISV N+G G+PV
Sbjct: 66 EMVNRSVTYVPGLYKIFDEILVNAADNKQRDPSMDSVQVVIDVEQNLISVCNSGAGVPVE 125
Query: 132 EHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRN 191
H++E ++VP MIFGHLLTSSN Y+D K TGGRN
Sbjct: 126 IHQEEGIYVPEMIFGHLLTSSN-------------------------YDDNVKKTTGGRN 160
Query: 192 GYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPD 250
GYGAKL NIFS++F++ET+ + K +KQV+++NM K + P I K +++TK+TF PD
Sbjct: 161 GYGAKLTNIFSTEFIIETADGKRLKKYKQVFENNMGKKSEPVITKCNKSENWTKVTFKPD 220
Query: 251 LTKFKMTSLDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLY---TDRQ 306
L KF MT L+ D+V L+++R +D A K VKV LNG+++PVK+F DYV LY ++
Sbjct: 221 LNKFSMTELEDDVVALMSKRVFDIAGCLGKSVKVELNGKQIPVKSFTDYVDLYLKAANKL 280
Query: 307 DEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIE 366
D DP+ I E VN RWEV ++ S+ FQQVSFVNSIAT KGG HVD V I I+
Sbjct: 281 RADPDPLPRITEKVNDRWEVCVSLSEGQFQQVSFVNSIATIKGGTHVDYVTSQITNYIVG 340
Query: 367 VVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFI 426
VV KKNK+ +K VKNH+W+F+
Sbjct: 341 VVNKKNKN------------------------------------ANVKAHNVKNHLWVFV 364
Query: 427 NCLIVNPTFDSQTKENMTLQKGSFGSTC-------------------------------- 454
N LI NP FDSQTKE +TL++ SFGS C
Sbjct: 365 NALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKKVGKSGVVENLLSWADFKKSKDLK 424
Query: 455 -----------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPL 503
V KLEDA +AG KNS CTLILTEGDSAK LA++G V+G + YGVFPL
Sbjct: 425 KSDGAKTGRVEVEKLEDAAEAGGKNSRLCTLILTEGDSAKPLALAGRTVLGENYYGVFPL 484
Query: 504 RGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDG 563
RGKLLNVREA+ QI N EI N+ KILGL+ + KY +++ +LRYG +MIMTDQD DG
Sbjct: 485 RGKLLNVREASTTQITNNKEIENIKKILGLKQNMKY---DNVSSLRYGHMMIMTDQDHDG 541
Query: 564 SHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREE--LSFYSLPEFEEWKEETT 620
SHIKGL+INFIH WP+LL++P FL EFITPI+KA ++ LSFYS+PE+E+WKE
Sbjct: 542 SHIKGLLINFIHSFWPSLLKVPSFLVEFITPIVKAKNKAKKKVLSFYSMPEYEDWKESMK 601
Query: 621 -NWHTYKIKYYK 631
N ++IKYYK
Sbjct: 602 GNATGWEIKYYK 613
Score = 127 bits (318), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 73/111 (65%), Gaps = 4/111 (3%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY+PIIP VLVNG+EGIGTGW T IPN+NPREIV N++ + GE +PM PWY+ F
Sbjct: 823 IEPTWYMPIIPTVLVNGSEGIGTGWSTFIPNYNPREIVANVRCRLNGESMVPMDPWYRGF 882
Query: 720 KGEIDYC----GDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
KG I+ G + + G +DD + ITEL + +W DYK L +L
Sbjct: 883 KGTIEKTASKEGGCTYTITGLYEEVDDTTIRITELPIRRWNDDYKQFLQSL 933
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 848 PDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL-REKDK 906
P +YDYLL M SLT+E+ ELL RD + + +KK P LW DL++L +E DK
Sbjct: 1110 PGSEYDYLLAMAIGSLTIEKVQELLADRDKMIIAVEDMKKHTPKSLWLRDLESLDKELDK 1169
Query: 907 I 907
+
Sbjct: 1170 L 1170
>gi|425768541|gb|EKV07062.1| DNA topoisomerase 2 [Penicillium digitatum PHI26]
gi|425775683|gb|EKV13939.1| DNA topoisomerase 2 [Penicillium digitatum Pd1]
Length = 1758
Score = 570 bits (1469), Expect = e-159, Method: Compositional matrix adjust.
Identities = 301/651 (46%), Positives = 391/651 (60%), Gaps = 119/651 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHI+ RPDTYIGS E T+ MW+ N T ME RE+++VPGLYKIFDEI+VNA
Sbjct: 132 YQKLTQLEHIIKRPDTYIGSTERTTQHMWVYNSGTEAMEYREVSFVPGLYKIFDEIVVNA 191
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK D MN ++IT+++E ISVWNNG+GIP+ H EK++VP +IFGHLLTSSNY
Sbjct: 192 ADNKHNDSSMNEMRITIDREAGEISVWNNGRGIPIEIHSREKIYVPELIFGHLLTSSNY- 250
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
+D + KVTGGRNG+GAKLCN+FS++F +ET S K
Sbjct: 251 ------------------------DDSQQKVTGGRNGFGAKLCNVFSTEFTLETQDSRQK 286
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K +KQ W +NM+K+ +I DD+TK+TF PD +F M +D D L+ RR YD A
Sbjct: 287 KKYKQTWTENMTKMGKAKITDAKGDDYTKVTFKPDFARFGMDGIDDDFEALVMRRVYDLA 346
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYT----DRQDEDGDPVK--IIYENVNPRWEVAIA 329
T +V V LNG ++PV+NF+ Y+++YT +D+DG P K II +PRWE+ A
Sbjct: 347 G-TANVGVKLNGTRVPVRNFRKYMEMYTKAIRKERDDDGPPSKDEIITCQPDPRWEIGFA 405
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ + D I ++ + VKKKNK
Sbjct: 406 VSDGSFQQVSFVNSIATTSGGTHVNYIADQICTRLADQVKKKNK---------------- 449
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LK Q++NHI+IF+ LIVNP F+SQTKE +T +
Sbjct: 450 -------------------SGATLKSAQIRNHIFIFVKALIVNPAFNSQTKEQLTTKASQ 490
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS C PKL DAN AGT
Sbjct: 491 FGSKCSLDEDFYKKVLKTEVMSNILHFAEQKADQILKKSETGRRTRMNNPKLVDANKAGT 550
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +N EI +
Sbjct: 551 REGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASFDQISKNVEIQS 610
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ +GLQ+ K+YT + K LRYG +MIMTDQD DGSHIKGL+INF+ +P+LL++P
Sbjct: 611 IKNFIGLQHKKEYT---ETKGLRYGHIMIMTDQDHDGSHIKGLLINFLQAQFPSLLKIPE 667
Query: 586 FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPIIK K ++ SF+++PE +EW++ + ++ KYYK
Sbjct: 668 FLIEFITPIIKVWKGDPKNPTKQKSFFTMPEHDEWRQAHKHERGWQHKYYK 718
Score = 128 bits (321), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 83/114 (72%), Gaps = 1/114 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE +IP++PM+L+NGA+GIGTGW + IPN+NP ++V+N+KR++ GE PM+PW++
Sbjct: 927 KIEPEVFIPVVPMILINGADGIGTGWSSSIPNYNPEDVVNNLKRLMAGEPTEPMQPWFRG 986
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F GE+ G R+ +G I + ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 987 FTGEVVAVGGDRYKFSGIIRECGEKEVEITELPLRTWTQDFKDKLEEIIK-AEK 1039
Score = 49.3 bits (116), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
+DYLLGM WSLT ER +L + +K TE+++L K + D+W+ DL+
Sbjct: 1214 FDYLLGMPMWSLTQERVEKLRSQIGEKETEVDVLIKLSKEDIWNRDLEEF 1263
>gi|367000283|ref|XP_003684877.1| hypothetical protein TPHA_0C02900 [Tetrapisispora phaffii CBS 4417]
gi|357523174|emb|CCE62443.1| hypothetical protein TPHA_0C02900 [Tetrapisispora phaffii CBS 4417]
Length = 1422
Score = 570 bits (1469), Expect = e-159, Method: Compositional matrix adjust.
Identities = 312/657 (47%), Positives = 401/657 (61%), Gaps = 124/657 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEHIL RPDTYIGSVE + W+ + E + M + + VPGL+KIFDEILVNA
Sbjct: 12 YQKISQLEHILKRPDTYIGSVEIQEQEQWIYDNELDCMIEKPVNIVPGLFKIFDEILVNA 71
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RD M I + +N E NTISV N+G+GIPV H+ E++++P +IF
Sbjct: 72 ADNKVRDKNMKRIDVDINAEENTISVRNDGRGIPVEIHEKEQIYIPELIF---------- 121
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLLTSSNY+D+E KVTGGRNGYGAKLCNIFS++F++ET+ S++
Sbjct: 122 ---------------GHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADSKHA 166
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
K + Q W++NM+ P I + K +TK+TF PDL +F M LD D++ ++ RR YD
Sbjct: 167 KKYVQKWENNMTTCHPPTITTYKKGPSYTKVTFKPDLKRFNMEKLDDDILGVMRRRVYDI 226
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTD-----RQDEDGDPVK-------IIYENVNP 322
S +D+ V+LNG L +K F++Y++LY RQ ++G+ I+YE +N
Sbjct: 227 NGSVRDINVYLNGNHLKIKTFKNYIELYLKSLEKKRQIDNGEDASVQANIPTILYERIND 286
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RWEV A SD FQQVSFVNSIATT GG HV+ + D IV+++ EV+KKK +
Sbjct: 287 RWEVGFAASDISFQQVSFVNSIATTTGGTHVNYIADQIVRKVGEVLKKKKNNK------- 339
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
+KPFQ+KN+++IFIN L+ NP F SQTKE
Sbjct: 340 ----------------------------KNVKPFQIKNNMFIFINALVENPAFTSQTKEQ 371
Query: 443 MTLQKGSFGSTC--------------------------------------------VPKL 458
+T + FGS C PKL
Sbjct: 372 LTTRVKDFGSRCEVGADFITKIMKTDFATKIYEIADANDTNALKKSDGSRKSRITEYPKL 431
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
EDAN AGTK CTLILTEGDSA SLAV+GL VVGRD YG +PLRGK+LNVREA+ QI
Sbjct: 432 EDANKAGTKEGYKCTLILTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQI 491
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNW 578
L+NAEI + KI+GLQ+ KKY ED +LRYG LMIMTDQD DGSHIKGLIINF+ ++
Sbjct: 492 LKNAEIQAIKKIMGLQHKKKY---EDASSLRYGHLMIMTDQDHDGSHIKGLIINFLESSF 548
Query: 579 PTLLRLP-FLEEFITPIIKATKA---REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P LL +P FL EFITPIIK T RE++SFY++P++E W+EE + +T+K KYYK
Sbjct: 549 PGLLDIPEFLVEFITPIIKVTITKPHREQISFYNMPDYERWREEESQKYTWKQKYYK 605
Score = 111 bits (277), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 72/113 (63%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PI+PMVLVNG EGIGTGW T IP NP++I+ N+K ++ GE+ M PW++ +
Sbjct: 815 VEPEWYLPILPMVLVNGTEGIGTGWSTSIPPFNPKDIIKNLKHLMNGEEMEEMHPWFRGW 874
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G ++ R+ + G+I LEITEL WT+ K+ L L G +K
Sbjct: 875 TGSLERIDPQRYRLFGKIEQTGPTTLEITELPARVWTSTIKEYLLLGLSGNDK 927
Score = 45.4 bits (106), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 811 NELAKPQKTGPQLERQE--RQAAEGEDDEAGSQTQEEEDPDK---DYDYLLGMTFWSLTM 865
N++ KP + E +E ++ E D+ G+ P++ +YDYLLGM WSLT
Sbjct: 1063 NKIGKPFYGEIKEESEEGIEDVSDEESDQNGNDDSLVNGPEEQYGNYDYLLGMKIWSLTK 1122
Query: 866 ERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
ER +L +++ +K EL L K + DLW DLDA E
Sbjct: 1123 ERYEKLSQQKKEKEIELEELLKLSAQDLWVIDLDAFDE 1160
>gi|407916972|gb|EKG10299.1| DNA topoisomerase II eukaryotic-type [Macrophomina phaseolina MS6]
Length = 1732
Score = 570 bits (1469), Expect = e-159, Method: Compositional matrix adjust.
Identities = 306/669 (45%), Positives = 394/669 (58%), Gaps = 122/669 (18%)
Query: 21 PKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITY 80
PK A + EK YQ+ +QLEHIL RPDTYIGSVE + MW+ N T ME RE+++
Sbjct: 73 PKAPKAAPGSATEK-YQRLTQLEHILKRPDTYIGSVERDQKQMWVYNSVTESMEMREVSF 131
Query: 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
VPGLYKIFDEILVNA DNKQ D MN +++ +++ + ISV NNGKGIP+ H E +++
Sbjct: 132 VPGLYKIFDEILVNAADNKQNDKNMNEMRVKIDRVSGEISVKNNGKGIPIEIHSKEGIYI 191
Query: 141 PTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNI 200
P +IF GHLLTSSNY+D + KVTGGRNGYGAKLCNI
Sbjct: 192 PELIF-------------------------GHLLTSSNYDDNQQKVTGGRNGYGAKLCNI 226
Query: 201 FSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLD 260
FS++F +ET S K +KQ W DNM+K +I S +D+T +TF PD KF M +D
Sbjct: 227 FSTEFSLETVDSRVGKKYKQTWTDNMAKCGKAKITSHKGEDYTMVTFKPDYAKFGMDGID 286
Query: 261 KDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR---------QDEDGD 311
D L RR YD A + K VKV+LNGE++ +KNF+DY+K+YT +G+
Sbjct: 287 DDFEGLAKRRVYDLAGTCKGVKVYLNGERIKIKNFKDYMKMYTKAIKSEQVASGASSEGE 346
Query: 312 PVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK 371
I+ +N + RWE+ A SD FQQVSFVNSIATT GG HV + D IV ++ +++KKK
Sbjct: 347 KEVILTDNPDERWEIGFAVSDGSFQQVSFVNSIATTSGGTHVSYIADQIVNKLTDIIKKK 406
Query: 372 NKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIV 431
NK GG LKP +KNHI++F+NC IV
Sbjct: 407 NK-----------------------------------GGFQLKPQHLKNHIFLFVNCQIV 431
Query: 432 NPTFDSQTKENMTLQKGSFGSTCV------------------------------------ 455
NP F SQTKE MT + FGS C
Sbjct: 432 NPAFTSQTKEQMTTKVSQFGSKCSVSDNFLKAIAKTEVVNNILHFAQQKADQVLKKSDGS 491
Query: 456 -------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLL 508
KL DAN AGTK+ CTLILTEGDSA LA++G V D +GVFPLRGK+L
Sbjct: 492 KRMRMNHSKLTDANKAGTKDGYRCTLILTEGDSASLLALAGRATVDPDLFGVFPLRGKML 551
Query: 509 NVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKG 568
NVR+A+ QI +N EI N+ K +GLQ+ K+YT D K+LRYG +MIMTDQD DGSHIKG
Sbjct: 552 NVRDASIDQISKNQEIQNIKKFIGLQHKKEYT---DTKSLRYGHIMIMTDQDHDGSHIKG 608
Query: 569 LIINFIHHNWPTLLRLP-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNW 622
L+INF+ +P+LL++ FL EFITPI+K K ++ SF+++PE+EEWK++ T+
Sbjct: 609 LLINFLQVQFPSLLKIEGFLLEFITPIVKVWKGDPKHPKQLKSFFTMPEYEEWKKDPTHQ 668
Query: 623 HTYKIKYYK 631
+ KYYK
Sbjct: 669 KGWDHKYYK 677
Score = 123 bits (308), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 81/113 (71%), Gaps = 3/113 (2%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRG---EDPLPMKPWY 716
IEP Y+PI+PM+LVNGA+GIGTGW + IPN+NP+EIV+N++R + G +D + M PW+
Sbjct: 887 IEPTMYVPILPMILVNGADGIGTGWSSSIPNYNPKEIVENLRRRMAGSSKDDMVRMMPWF 946
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHG 769
KN++G I+ G R+ G+I + ++EI+EL + WT D+KD L+ ++ G
Sbjct: 947 KNWEGTIEDMGGDRYKFTGKILQTGELEVEISELPIRVWTQDFKDKLEEIIKG 999
Score = 69.7 bits (169), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 40/53 (75%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
DYDYLLGM WSLT ER +LLK+ DK E++IL KK+P DLW++DL+A E
Sbjct: 1167 DYDYLLGMAIWSLTQERVEKLLKQIGDKEEEIDILLKKSPKDLWNEDLEAFIE 1219
>gi|18369822|dbj|BAB84106.1| DNA topoisomerase II [Talaromyces flavus var. flavus]
Length = 1094
Score = 570 bits (1468), Expect = e-159, Method: Compositional matrix adjust.
Identities = 308/651 (47%), Positives = 394/651 (60%), Gaps = 120/651 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK S EHI+ RPDTYIGS E + MW+ + T ME RE+TYVPGLYKIFDEI+VNA
Sbjct: 4 YQKLSPREHIIKRPDTYIGSTEMTPQQMWVYSSATEGMEFREVTYVPGLYKIFDEIVVNA 63
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQ D M+ I++T+++E+ ISVWNNG+GIP+ H EK++VP +IFGHLLTSSNY
Sbjct: 64 ADNKQNDKNMDEIRVTIDRESGVISVWNNGRGIPIEMHAKEKIYVPELIFGHLLTSSNY- 122
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
+D + KVTGGRNGYGAKLCN+FS++F++ET S K
Sbjct: 123 ------------------------DDTQQKVTGGRNGYGAKLCNVFSTEFILETQDSHQK 158
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K +KQ W DNM+KV +I +DFTK+TF PD KF MT +D D L+ RR YD A
Sbjct: 159 KRYKQTWTDNMTKVGKAKITEAKGEDFTKVTFKPDYAKFGMTGIDDDFEALVKRRVYDLA 218
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTD---RQDEDGDPV---KIIYENVNPRWEVAIA 329
+ K V V LNG ++P++NF+ Y+++YT R+ D P +II + +PRWEV A
Sbjct: 219 GTAK-VAVKLNGSRIPIRNFKKYMEMYTKAIRRERGDDGPAPKDEIITCSPDPRWEVGFA 277
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ + D I ++ +KKKNK+
Sbjct: 278 VSDGSFQQVSFVNSIATTSGGTHVNYIADQICGRLATELKKKNKN--------------- 322
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LKP Q++NHI+IF+N LIVNP F SQTKE +T ++
Sbjct: 323 --------------------GATLKPAQLRNHIFIFVNALIVNPAFTSQTKEQLTTKQTQ 362
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS C PKL DAN AGT
Sbjct: 363 FGSKCPLEDDFYKKILKTNVMSNILSFAAHKADQMLKKTDGGRRSRMNNPKLTDANKAGT 422
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ +QI +NAEI N
Sbjct: 423 KEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASFEQISKNAEIQN 482
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ +GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+INF+ +P+LL++P
Sbjct: 483 IKNFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINFLQAQFPSLLKIPE 539
Query: 586 FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K + SF+++PE+E ++E N ++ KYYK
Sbjct: 540 FLIEFITPIVKVWKGDPKNPTRQHSFFTMPEYEAFREAHKN-ERWEHKYYK 589
Score = 130 bits (327), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 83/114 (72%), Gaps = 1/114 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE Y+P++PM+LVNG +GIGTGW + IPN+NP +IV+N++RM+ GE+ PM+PW++
Sbjct: 798 KIEPEIYMPVVPMILVNGTDGIGTGWSSSIPNYNPEDIVENLRRMMDGEEIKPMQPWFRG 857
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F GE+ G R+ +G I D ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 858 FNGEVTDMGGDRYKFSGIIKETGDKEVEITELPIRTWTQDFKDKLEDIIK-AEK 910
>gi|298712279|emb|CBJ26730.1| DNA topoisomerase II [Ectocarpus siliculosus]
Length = 1809
Score = 570 bits (1468), Expect = e-159, Method: Compositional matrix adjust.
Identities = 296/653 (45%), Positives = 405/653 (62%), Gaps = 123/653 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+VE+ YQKK+QLEHILLRPDTYIGS E +++ MW+ + + + +R +T+VPGLYKIFDE
Sbjct: 41 TVEQRYQKKTQLEHILLRPDTYIGSTEKMSQEMWVYDEVADSIVKRAVTFVPGLYKIFDE 100
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
I+VNA DNKQRD M+ +K+TV+ E+ ISVWN+G GIP+ HK+ ++VP +IFG+LLT
Sbjct: 101 IIVNAADNKQRDENMSKLKVTVDAESGKISVWNDGAGIPIQMHKEHHIYVPELIFGNLLT 160
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
SN ++D++ K TGGRNG+GAKL NI+S++FVVET+
Sbjct: 161 GSN-------------------------FDDDQKKTTGGRNGFGAKLANIYSTEFVVETA 195
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITR 269
+ K ++QV+++NM + +PEI + DFT ITFTPD +F MT ++ D + L+ +
Sbjct: 196 DRDAGKHYRQVFRNNMQEKEAPEIDCDYEGPDFTCITFTPDWKRFHMTGMEADTIALLRK 255
Query: 270 RAYDAAA-----STKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRW 324
R YD A + VKV+L+ ++ V F+DY+ +Y +G +I+E++ RW
Sbjct: 256 RVYDMAGCMGGYAGASVKVYLDNRRVKVSGFKDYMSMY------EGMETPVIFESIGDRW 309
Query: 325 EVAIAPS-DRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLF 383
EV +A S D FQQVS+VN+I T KGG HV+ V + ++ +++ V+K+K+K
Sbjct: 310 EVGVAVSADSVFQQVSYVNAICTVKGGTHVECVANQVINKLLPVLKRKHK---------- 359
Query: 384 GNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENM 443
+K VKNH+ +F+N L+ NP F+SQ+KE +
Sbjct: 360 ---------------------------AEVKGHFVKNHLCVFVNGLVENPAFNSQSKEAL 392
Query: 444 TLQKGSFGS--------------------------------------------TCVPKLE 459
T + FGS T + KL+
Sbjct: 393 TSKDTLFGSVPKISDAGLKKLEKSEIVDRVLSWAKHKQNQQLNKKSGKKSSKLTGITKLD 452
Query: 460 DANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQIL 519
DAN AGT S DCTLILTEGDSAK+LAVSGLGVVGRD+YGVFPL+GKLLNVREAT Q+L
Sbjct: 453 DANHAGTAKSQDCTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLKGKLLNVREATGPQVL 512
Query: 520 ENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWP 579
+N EI N+VKILGL+++ Y +D K LRYG LMIMTDQD DGSHIKGL+INF+HH WP
Sbjct: 513 KNEEIQNVVKILGLKFNHTY---DDTKQLRYGHLMIMTDQDHDGSHIKGLLINFVHHYWP 569
Query: 580 TLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+LL++ FL+EFITPI+K +K R ELSFY++PE+ WKE N + KYYK
Sbjct: 570 SLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYK 622
Score = 128 bits (321), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 83/117 (70%), Gaps = 5/117 (4%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE+Y+PIIP++LVNG++GIGTGW + +PN++P ++++N+KR I+G+ + M+PWYK F
Sbjct: 833 IEPEFYMPIIPLILVNGSDGIGTGWSSNVPNYSPHDVIENLKRRIKGDKFVEMQPWYKGF 892
Query: 720 KGEIDY-----CGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAE 771
G I+ + + V G +DD +EITEL V KWT DYK L++LL GAE
Sbjct: 893 AGSIEAKVGKKGFEGSYTVRGIANRIDDTTVEITELPVRKWTQDYKQFLESLLPGAE 949
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 42/71 (59%)
Query: 831 AEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAP 890
EGED S + + K YDYLLGM WSLT+ER L + + K E+ ILK AP
Sbjct: 1128 GEGEDGNEESAADDSDTLSKGYDYLLGMKIWSLTLERVKLLENELEGKAEEMRILKATAP 1187
Query: 891 TDLWSDDLDAL 901
++LW DLDAL
Sbjct: 1188 SELWLKDLDAL 1198
>gi|189193341|ref|XP_001933009.1| DNA topoisomerase 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187978573|gb|EDU45199.1| DNA topoisomerase 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 1722
Score = 569 bits (1467), Expect = e-159, Method: Compositional matrix adjust.
Identities = 303/666 (45%), Positives = 403/666 (60%), Gaps = 122/666 (18%)
Query: 21 PKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITY 80
PKK ++K YQ + LEHI+ RPDTYIGSVE T+ MW+ N E++ ME R++TY
Sbjct: 135 PKKGGASSK------YQMLTHLEHIMKRPDTYIGSVERQTDKMWVYNSESDSMEFRDVTY 188
Query: 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
VPGLYKIFDEILVNA DNKQ D M+ I++TV++ET IS+ N+GKGIP+ HK+ ++V
Sbjct: 189 VPGLYKIFDEILVNAADNKQNDKNMSEIRVTVDRETGEISIKNDGKGIPIEIHKEHGIYV 248
Query: 141 PTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNI 200
P MIF GHLLTSSNY+D++ KVTGGRNGYGAKLCN+
Sbjct: 249 PEMIF-------------------------GHLLTSSNYDDDQQKVTGGRNGYGAKLCNV 283
Query: 201 FSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLD 260
FS++F VET S+ KK ++Q W +NMSK+ +I DD+TK+++ D +F MT +D
Sbjct: 284 FSTEFTVETVDSKQKKKYRQTWTENMSKMGKAKISDIKSDDYTKVSWKADYARFGMTGID 343
Query: 261 KDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR------QDEDGDPVK 314
D ++ RR YD A + + VKV+LNG+++ + +F Y+++YT + ED
Sbjct: 344 DDFEAMVKRRTYDMAGTLRGVKVYLNGDRIKLTSFAKYMEMYTKSISRDQGKSEDDKEKD 403
Query: 315 IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKD 374
+I + RW++ A SD F QVSFVNSIATT GG HV+ + D IV++++ +V KKNK
Sbjct: 404 VIITDKLDRWDIGFAVSDGSFNQVSFVNSIATTSGGTHVNHIADQIVEKLMAIVNKKNK- 462
Query: 375 LGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPT 434
+ LKP Q+KNH+++F+NC IVNP
Sbjct: 463 ----------------------------------AAVKLKPAQIKNHLFLFVNCSIVNPA 488
Query: 435 FDSQTKENMTLQKGSFGSTCV--------------------------------------- 455
F SQTKE +T + FGS V
Sbjct: 489 FTSQTKEQLTTRPSQFGSKPVLSDKFLNAIAKTDVIQNIMHFAQQKADQMMKKTDGNKRN 548
Query: 456 ----PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVR 511
KL DAN AGTK+ CTLILTEG+SA LA++G VV +D +GVFPLRGKLLNVR
Sbjct: 549 RISNAKLTDANKAGTKDGHLCTLILTEGESASVLALAGRAVVNQDLFGVFPLRGKLLNVR 608
Query: 512 EATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLII 571
+AT QI++NAEI N+ K +GLQ+ K+Y T+ DMK+LRYG LMIMTDQD DGSHIKGL+I
Sbjct: 609 DATVDQIMKNAEIQNIKKFMGLQHKKEY-TMADMKSLRYGHLMIMTDQDHDGSHIKGLLI 667
Query: 572 NFIHHNWPTLLRLP-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTY 625
NF+ +P+LL++P FL EFITPI+K K R SF+S+PE+EEWKE+ + +
Sbjct: 668 NFLQCQFPSLLKIPGFLLEFITPIVKVWKGDPKNPRNMKSFFSMPEYEEWKEQHQHEKGW 727
Query: 626 KIKYYK 631
KYYK
Sbjct: 728 DHKYYK 733
Score = 112 bits (280), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 76/118 (64%), Gaps = 5/118 (4%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIR----GEDPLPMKP 714
+IEPE ++PI+P +L+NG+ GIGTGW ++IPN NP +I+ NI+R + +D PM P
Sbjct: 942 KIEPEMFVPILPTILINGSSGIGTGWSSEIPNFNPMDIIANIRRRMEPGATKDDMTPMIP 1001
Query: 715 WYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
WYK F G G R+ G + D+++EITEL V WT D+K+ L+ ++ AEK
Sbjct: 1002 WYKGFTGTTTEIGPDRYQFTGTVRQTGDNEVEITELPVRYWTQDFKEKLEEIIK-AEK 1058
Score = 67.0 bits (162), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 56/87 (64%), Gaps = 5/87 (5%)
Query: 821 PQLERQERQAAEGED---DEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDD 877
P++E + +QA E ED DEA S+ + E DYDYLLGM WSLT ER +L+K+ +
Sbjct: 1195 PKVE-EAKQAGEVEDYQEDEA-SEDADVEVSANDYDYLLGMAIWSLTQERVEKLMKQIGE 1252
Query: 878 KMTELNILKKKAPTDLWSDDLDALREK 904
K E++ L K +P D+W+ DLDA ++
Sbjct: 1253 KQHEIDTLIKLSPKDIWNVDLDAFMDE 1279
>gi|396467124|ref|XP_003837847.1| similar to DNA topoisomerase II [Leptosphaeria maculans JN3]
gi|312214411|emb|CBX94403.1| similar to DNA topoisomerase II [Leptosphaeria maculans JN3]
Length = 1716
Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust.
Identities = 306/667 (45%), Positives = 402/667 (60%), Gaps = 123/667 (18%)
Query: 21 PKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITY 80
PKK ++K YQ + LEHI+ RPDTYIGSVE T+ MW+ N T ME R++TY
Sbjct: 137 PKKGGASDK------YQMLTHLEHIMKRPDTYIGSVERQTDKMWVYNSSTESMEFRDVTY 190
Query: 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
VPGLYKIFDEILVNA DNKQ D M+ I++T+++ET IS+ N+GKGIP+ HK+ ++V
Sbjct: 191 VPGLYKIFDEILVNAADNKQNDKNMSEIRVTLDRETGEISIKNDGKGIPIEIHKEHGIYV 250
Query: 141 PTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNI 200
P MIF GHLLTSSNY+D + KVTGGRNGYGAKLCN+
Sbjct: 251 PEMIF-------------------------GHLLTSSNYDDNQQKVTGGRNGYGAKLCNV 285
Query: 201 FSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITFTPDLTKFKMTSL 259
FS++F VET S+ KK +KQ W DNMSK+ +I S DD+TK+++ D +F MT +
Sbjct: 286 FSTEFTVETVDSKQKKKYKQTWTDNMSKMGKAKIVDFKSSDDYTKVSWKADYDRFGMTGI 345
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR------QDEDGDPV 313
D D ++ RR YD A + + VKV+LNG+++ V +F Y+++YT + ED
Sbjct: 346 DDDFEAMVKRRTYDIAGTLRGVKVYLNGDRVKVTSFAKYMEMYTKSIAREQGRSEDDKEA 405
Query: 314 KIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNK 373
+I + + RW++ A SD F QVSFVNSIATT GG HV+ + + IV +++ +V KKNK
Sbjct: 406 NVIITDKHDRWDIGFAVSDGAFNQVSFVNSIATTSGGTHVNYIAEQIVDRLLAIVNKKNK 465
Query: 374 DLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNP 433
+ LKP Q+KNHI++F+NC IVNP
Sbjct: 466 -----------------------------------AAVKLKPAQIKNHIFLFVNCSIVNP 490
Query: 434 TFDSQTKENMTLQKGSFGSTCV-------------------------------------- 455
F SQTKE +T + FGS V
Sbjct: 491 AFTSQTKEQLTTKSSQFGSKPVLSDKFLKAIEKTDVIQNIMHFAQQKADQMMKKTDGNKR 550
Query: 456 -----PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNV 510
KL DAN AGTK+ CTLILTEG+SA LA++G VV +D +GVFPLRGKLLNV
Sbjct: 551 NRISNAKLTDANKAGTKDGHLCTLILTEGESASVLALAGRAVVNQDLFGVFPLRGKLLNV 610
Query: 511 REATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLI 570
R+AT QI++NAEI N+ K +GLQ+ K+Y TV DMK+LRYG LMIMTDQD DGSHIKGL+
Sbjct: 611 RDATVDQIMKNAEIQNIKKFMGLQHKKEY-TVSDMKSLRYGHLMIMTDQDHDGSHIKGLL 669
Query: 571 INFIHHNWPTLLRLP-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHT 624
INF+ +P+LL++P FL EFITPI+K K R SF+S+PE+EEWKE+ +
Sbjct: 670 INFLQCQFPSLLKIPGFLLEFITPIVKVWKGDPKNPRSLKSFFSMPEYEEWKEQHKHEKG 729
Query: 625 YKIKYYK 631
++ KY+K
Sbjct: 730 WEHKYFK 736
Score = 121 bits (304), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 77/112 (68%), Gaps = 4/112 (3%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIK-RMIRG---EDPLPMKPW 715
IEPE YIP++P +L+NG+ GIGTGW ++IPN NP EI+DNI+ RM G ED PM PW
Sbjct: 946 IEPEMYIPVLPTILINGSSGIGTGWSSEIPNFNPMEIIDNIRIRMKEGATKEDMRPMVPW 1005
Query: 716 YKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
YK F G + G++R+ G I D+++E+TEL V WT D+K+ L+ ++
Sbjct: 1006 YKGFTGRTEELGENRYQFTGTIRQTGDNEVEVTELPVRYWTQDFKEKLEEII 1057
Score = 62.4 bits (150), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 38/54 (70%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
DYDYLLGM WSLT ER +LLK+ +K E++ L K +P D+W+ DLDA E+
Sbjct: 1230 DYDYLLGMAIWSLTQERVEKLLKQIGEKEEEIDTLIKLSPKDIWNVDLDAFVEE 1283
>gi|336378314|gb|EGO19472.1| hypothetical protein SERLADRAFT_453445 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1467
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 303/692 (43%), Positives = 408/692 (58%), Gaps = 143/692 (20%)
Query: 2 SSDESDFDPD----VQQNGNGPSPKKKTPAN---KMSVEKIYQKKSQLEHILLRPDTYIG 54
++DES D D + + GPS K T A K + + Y K SQLEHIL RPD+YIG
Sbjct: 59 NADESIMDVDDVMISEDDEAGPSQPKPTVAKNGKKKTASETYTKLSQLEHILKRPDSYIG 118
Query: 55 SVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQ 114
SVE IT+ +W + +T M RE+ YVPG +KI DEILVNA DNK D M+ +K+T++
Sbjct: 119 SVETITQALWTYDADTKRMVHRELKYVPGFFKIVDEILVNAADNKINDKTMDTLKVTIDV 178
Query: 115 ETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLL 174
+ +TISV+NNG+GIP+ H EKM++P +IF GHLL
Sbjct: 179 DNSTISVFNNGRGIPIEMHSTEKMYIPELIF-------------------------GHLL 213
Query: 175 TSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI 234
+SSNY+D+E K+TGGRNGYGAKL NI+S +F ++T+ + +KQ W +NMS V +I
Sbjct: 214 SSSNYDDDEKKLTGGRNGYGAKLANIYSHEFTIDTADKNSSQKYKQTWTNNMSNVGKAKI 273
Query: 235 KSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVK 293
SK +++T++TF PDL +F M S+D+D V L+ +R YD A + +DVKVFLN E+L +K
Sbjct: 274 TKNSKNEEYTRVTFRPDLKRFGMDSIDEDTVSLLKKRVYDMAGTIRDVKVFLNDERLKIK 333
Query: 294 NFQDYVKLYTDRQDEDGDPVK---------IIYENVNPRWEVAIAPSDRGFQQVSFVNSI 344
NF+ YV+LY + + +I+E V PRWEVA A SD FQQVSF NSI
Sbjct: 334 NFKQYVELYLNSVAAEAAEASGGAAQAKPTVIHEQVGPRWEVAFAVSDGSFQQVSFANSI 393
Query: 345 ATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDI 404
ATTKGG HV + D + K +I + KKNK
Sbjct: 394 ATTKGGTHVTLISDQLAKNLIAAITKKNK------------------------------- 422
Query: 405 GVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS------------ 452
+KP Q+KNH+WIF+N LI NPTFDSQTKE +TL G FG+
Sbjct: 423 -----AATVKPAQIKNHMWIFVNALIENPTFDSQTKETLTLPAGKFGTKPVLSEEFMKKV 477
Query: 453 --------------------------------TCVPKLEDANDAGTKNSIDCTLILTEGD 480
T +PKL DAN+AGT+N+ CTLILTE
Sbjct: 478 QKSTIIDNILNWAKFKADQQIKKTDGSKRNRLTGLPKLADANNAGTRNAEKCTLILTE-- 535
Query: 481 SAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYT 540
D +GVFPLRGKLLNVREA H QI++N EI N+ KI+GLQ++K Y+
Sbjct: 536 ---------------DNFGVFPLRGKLLNVREAKHDQIMKNEEIQNIKKIMGLQHNKVYS 580
Query: 541 TVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATK 599
+ +LRYGRLMIMTDQD DGSHIKGL+INF+ H +P+LL++P FL EF+TPI++ +K
Sbjct: 581 GI---GSLRYGRLMIMTDQDHDGSHIKGLLINFLDHFFPSLLKIPNFLVEFVTPIVRVSK 637
Query: 600 AREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
++ + F+++PE+E+W E+T + H + KY+K
Sbjct: 638 GKQRIDFFTIPEYEQWVEDTPDAHKWDAKYFK 669
Score = 135 bits (340), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 81/108 (75%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE+Y+P+IP+VL+NGAEGIGTGW T IP +NP +IV+NI+RM+ GE+ +PM PW++ F
Sbjct: 879 IEPEYYLPVIPLVLINGAEGIGTGWSTSIPCYNPEDIVNNIRRMMAGEELVPMLPWWRGF 938
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
KG I GD ++ V G ++D +EITEL + KWT +YK L+ ++
Sbjct: 939 KGTIKKVGDYKYDVIGVARKINDTTVEITELPIHKWTQNYKAELEAMI 986
Score = 58.2 bits (139), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 16/160 (10%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPC 910
DYDYLLGM WSLT E+ +LL++ +K EL IL ++ P +W++DLD + + +
Sbjct: 1153 DYDYLLGMAIWSLTSEKIEKLLQQAQEKEAELLILLERTPVKMWNEDLDMFMAEWQKNCE 1212
Query: 911 PGGNRT----RGLALKRQTRYQPSNRVLTSRDEPMVVSSGE-DAPPPTKASPVKKKKPAA 965
N++ G +KR+ + + L+ + +S + D K +P K +KPA
Sbjct: 1213 QWENKSLLDANGKRVKRKQATLETRKSLSGPGKKKAHASDDSDYDVKPKKAPAKPRKPAE 1272
Query: 966 KRPAPKSDSSDLSDSDGDSDF-----------ASRKKKTA 994
+ K+ ++ S + D AS K+KT+
Sbjct: 1273 PKATAKNATAGSSKVKKEEDIEVAPVIAKVQQASAKRKTS 1312
>gi|313235194|emb|CBY25067.1| unnamed protein product [Oikopleura dioica]
Length = 1427
Score = 568 bits (1465), Expect = e-158, Method: Compositional matrix adjust.
Identities = 300/673 (44%), Positives = 396/673 (58%), Gaps = 121/673 (17%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E+ Y+K LEH+LLRPD Y+GS+E E MW+ + E+ ++EI ++P LYKI+DE
Sbjct: 4 TIEETYKKVDSLEHVLLRPDMYVGSIEASKENMWVFDAESTQFVQKEIEFIPALYKIYDE 63
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNK RDP N +K+ ++ E N ISV NNGKGIP+ HK+ ++VP +IFGH++T
Sbjct: 64 ILVNAADNKVRDPNQNMVKVDIDTENNKISVLNNGKGIPIEIHKEHGVYVPELIFGHMMT 123
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
SSN Y++ E K TGGRNGYGAKLCNIFS++F VET
Sbjct: 124 SSN-------------------------YDESEKKTTGGRNGYGAKLCNIFSTEFTVETV 158
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
+ K W NM K + IKS SKDD+TKI+FTPDL +F MT L DMV L +R
Sbjct: 159 NKKIGKRLTVTWTGNMKKKGNAVIKSYSKDDYTKISFTPDLKRFNMTHLSNDMVSLFRKR 218
Query: 271 AYDAAASTKDVKVFLNGEKLPVKN---FQDYVKLYTDRQDED-GDPVKIIYEN-----VN 321
AYD A +T V VFL+G+++ F+DY +YT + D G V +IYE
Sbjct: 219 AYDIAGTTPGVSVFLDGQRIAFNKKDPFKDYCNMYTKGKILDTGKEVTLIYEKPENKEAK 278
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V A SD GFQ +SFVNSI T+KGG HV+A+ D +VK++ E+V KKNK
Sbjct: 279 GRWDVGFAISDNGFQNISFVNSINTSKGGHHVNAISDQLVKRLEELVNKKNK-------- 330
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
GG+A+K Q+K+H WIF+N I NP FDSQTKE
Sbjct: 331 ---------------------------GGLAVKAHQIKSHCWIFVNSQIENPAFDSQTKE 363
Query: 442 NMTLQKGSFGS-------------------------------------------TCVPKL 458
+TL K GS + KL
Sbjct: 364 TLTLVKSKHGSKPILSDAFIKKVEKSGIVETITNFMKFKENQAKGKIGGKKQKKVVILKL 423
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPLRGKLLNVREATHK 516
+DA +AG S DCTLILTEGDSAK+ A++G+ + K YGVFPLRGKLLN REA H+
Sbjct: 424 DDAPEAGKTRSKDCTLILTEGDSAKTAALAGVSSMADLKRYYGVFPLRGKLLNAREAGHQ 483
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
Q+ +N EI N+++ +G + +KY ED+K+LRYGRLMIMTDQD DGSHIKGLIINF+HH
Sbjct: 484 QLTKNEEIKNIIQAMGFDFKRKYDNPEDLKSLRYGRLMIMTDQDVDGSHIKGLIINFLHH 543
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREE-------LSFYSLPEFEEWKEETTNWHTYKIKY 629
WP ++R P +++FITPI+K ++E +FYSLPEF +W+ E N Y+++Y
Sbjct: 544 FWPNMIRGPTVQQFITPIVKIFLKKDENKQNCKKTNFYSLPEFNKWQREVPNLDAYRVEY 603
Query: 630 YKVVYVTGVLLFK 642
YK + +G FK
Sbjct: 604 YKGLGTSGPEEFK 616
Score = 128 bits (321), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 80/115 (69%), Gaps = 1/115 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP Y PI+PMVLVNG+ GIGTGW T IPNHN R+ + NI+RMI G++PL + P+Y+ +
Sbjct: 820 VEPTHYCPIVPMVLVNGSSGIGTGWSTNIPNHNIRDCIKNIRRMIEGKEPLDLVPFYEGY 879
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
+G I+ G +R V GEIA+L+ D +EITEL WT DYK L + G + D+
Sbjct: 880 RGTIESLGTARAVSFGEIALLESDVVEITELPPQVWTDDYKQKL-MKMQGGQDDK 933
Score = 60.8 bits (146), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 816 PQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKR 875
P K + R+E+ +D+E + + + DY YLL M ++LT+E+K LLK++
Sbjct: 1074 PVKAWEKKVRKEQDLELSDDEEDAADENAQLEAKSDYQYLLSMPIYNLTLEKKEALLKEK 1133
Query: 876 DDKMTELNILKKKAPTDLWSDD-LDALREKDKIH 908
+ ++LKKK PTDLW +D LD + DKI
Sbjct: 1134 GQIEHDFDVLKKKTPTDLWEEDLLDLEKTLDKIQ 1167
>gi|50551479|ref|XP_503213.1| YALI0D23969p [Yarrowia lipolytica]
gi|49649081|emb|CAG81413.1| YALI0D23969p [Yarrowia lipolytica CLIB122]
Length = 1537
Score = 568 bits (1465), Expect = e-158, Method: Compositional matrix adjust.
Identities = 315/675 (46%), Positives = 403/675 (59%), Gaps = 122/675 (18%)
Query: 15 NGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHME 74
N PSPK K S + YQK +QLEHIL RPDTYIGSVE MW+ N+ T+ +E
Sbjct: 86 NAPVPSPKGTPKGKKGSASEQYQKLTQLEHILKRPDTYIGSVEATASPMWVWNQTTSALE 145
Query: 75 RREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHK 134
+ +T VPGLYKIFDEILVNA DNK RDPKM+ +++T++ + N ISV NNGKGIPV H
Sbjct: 146 HKMVTIVPGLYKIFDEILVNAADNKIRDPKMDSLEVTIDADKNEISVMNNGKGIPVEIHD 205
Query: 135 DEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYG 194
EK+++P +IFG+LLTSSNYN D E KV GGRNG+G
Sbjct: 206 KEKIYIPELIFGNLLTSSNYN-------------------------DNEKKVVGGRNGFG 240
Query: 195 AKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITFTPDLTK 253
AKLCNIFS++F +ET+ + K + Q W +NMSKV P+IK +K ++TK+TF PDL
Sbjct: 241 AKLCNIFSTEFKLETADQKNGKIYTQTWSNNMSKVDKPKIKELKTKKEYTKVTFKPDLKL 300
Query: 254 FKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR--QDEDGD 311
F MT LD D V ++ RR YD A +T VKV LNG +L +K+F+ YV LY DED +
Sbjct: 301 FNMTELDADTVGVLMRRVYDIAGTTHGVKVKLNGTRLALKDFKAYVDLYLKSLVADEDNE 360
Query: 312 PV---KIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVV 368
V KI++E VN RWEVA A SD +Q VSFVNSIATT GG HV+ + D +V ++
Sbjct: 361 VVQKSKIVHEIVNDRWEVAFAVSDGTYQNVSFVNSIATTSGGTHVNYIADQLVAKLTATA 420
Query: 369 KKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINC 428
KKK KD +KP Q+K +++IFINC
Sbjct: 421 KKKLKD------------------------------------AQVKPAQLKANMFIFINC 444
Query: 429 LIVNPTFDSQTKENMTLQKGSFGSTC---------------------------------- 454
LI NP F SQTKE MT + +FGS C
Sbjct: 445 LIENPAFTSQTKEQMTTKVSAFGSKCELSDKFIKQVTNNTDIMERVLSIAGRNADAALKK 504
Query: 455 ------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFP 502
+ KLEDA AGTK +CTLILTEGDSA ++A +GL V+GR++YG FP
Sbjct: 505 TDGSSKKKRITTLVKLEDAQLAGTKRGHECTLILTEGDSAMTMANAGLSVIGRERYGAFP 564
Query: 503 LRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQD 562
LRGK+LNVREA+ QI++NAEI + +I+GLQ+ K YT+ +D LRYG LMIMTDQD D
Sbjct: 565 LRGKMLNVREASTDQIMKNAEIQAIKEIIGLQHKKHYTSCKD---LRYGHLMIMTDQDHD 621
Query: 563 GSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAR-----EELSFYSLPEFEEWK 616
GSHIKGLIINF+ +P LL++P FL EFITPI+K R + + FY++PE+E W+
Sbjct: 622 GSHIKGLIINFLETMFPGLLQIPGFLLEFITPIVKVMVMRGKKVVKTIPFYNMPEYEAWR 681
Query: 617 EETTNWHTYKIKYYK 631
+ T+ KY+K
Sbjct: 682 DFEGQQCTWTSKYFK 696
Score = 124 bits (312), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 75/104 (72%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPE+Y+P++PM+LVNG EGIG+GW T IP +NP +IVDN++RM++ E P+PM PW++ +
Sbjct: 906 VEPEYYLPVLPMLLVNGCEGIGSGWSTSIPPYNPLDIVDNLRRMLKDEPPVPMIPWFRGW 965
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTL 763
GE++ GD R+ V G I +D+ L ITEL WT K+ L
Sbjct: 966 HGEVEPVGDGRYKVKGLIEQVDERTLCITELPARMWTISMKEFL 1009
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 57/105 (54%), Gaps = 13/105 (12%)
Query: 811 NELAKPQ--KTGPQLERQERQAAEGEDDEAGSQTQEEE----------DPDKDYDYLLGM 858
+EL P+ K G +L + +AA ED+EA S E+ P YDYLLGM
Sbjct: 1146 SELKFPRYGKNGERLA-SDAKAAIAEDEEAPSDEVAEDLAEAEEIHGKIPTNGYDYLLGM 1204
Query: 859 TFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
WSLT ER +LL++RD K EL L KK+ D+W DDLD E
Sbjct: 1205 ALWSLTKERYEKLLRERDGKEEELIELLKKSAKDIWMDDLDVFME 1249
>gi|25006383|dbj|BAC24011.1| DNA topoisomerase II [Trichophyton interdigitale]
Length = 1093
Score = 568 bits (1464), Expect = e-158, Method: Compositional matrix adjust.
Identities = 310/653 (47%), Positives = 391/653 (59%), Gaps = 121/653 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHIL RPDTYIGSVE + MW+ N T ME RE+++VPGLYKIFDEILVNA
Sbjct: 1 YQKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNA 60
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQ DP M+ I++T+++E ISVWNNG+GIPV HK E++++P +IFGHLLTSSNYN
Sbjct: 61 ADNKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTSSNYN 120
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D ++KVTGGRNGYGAKLCNIFS++F VET+ S+ K
Sbjct: 121 -------------------------DMQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQK 155
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K FK W +NMS + +I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 156 KKFKLTWTNNMSTMGKAKITECKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMA 215
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTD--RQDEDGDPVK------IIYENVNPRWEVA 327
T V LNG ++P+K+F+ Y+++YT + + DP II E+ + RWE+
Sbjct: 216 G-TCGTAVKLNGTRIPIKSFKKYMEMYTKAIKAERGEDPTSASDKNDIITESPDRRWEIG 274
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
SD FQQVSFVNSIATT GG HV+ + D I ++ + +KKKNK
Sbjct: 275 FTVSDGSFQQVSFVNSIATTSGGTHVNYISDQICNKLADALKKKNKT------------- 321
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
G LK Q+KNHI++F+N IVNP F SQTKE +T +
Sbjct: 322 ----------------------GATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTRA 359
Query: 448 GSFGSTCV-------------------------------------------PKLEDANDA 464
FGS CV PKL DAN A
Sbjct: 360 SQFGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKA 419
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
GTK+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI
Sbjct: 420 GTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEI 479
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
N+ +GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +PTLL++
Sbjct: 480 QNIKNFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKI 536
Query: 585 P-FLEEFITPIIKATKAR-----EELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P FL EFITPI+K K SF++LPE+EEWKE + ++ KYYK
Sbjct: 537 PGFLIEFITPIVKVWKGNPKNPTHTKSFFTLPEYEEWKEAHAHDKKWQKKYYK 589
Score = 138 bits (347), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 87/113 (76%), Gaps = 2/113 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P++L+NGA+GIGTGW T IPN+NP E+VDN+KR++ GE+ +PMKPW++ F
Sbjct: 799 IEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMAGEELVPMKPWFRGF 858
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KGE+ GD R+ +G I D+++EITEL + WT D+KD L+ ++ AEK
Sbjct: 859 KGEVTGSGD-RYKFSGIIKQTADNEVEITELPIRTWTQDFKDKLEEIIK-AEK 909
>gi|25006389|dbj|BAC24014.1| DNA topoisomerase II [Arthroderma gypseum]
Length = 1091
Score = 568 bits (1464), Expect = e-158, Method: Compositional matrix adjust.
Identities = 310/651 (47%), Positives = 386/651 (59%), Gaps = 119/651 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHIL RPDTYIGSVE + MW+ N T ME RE+++VPGLYKIFDEILVNA
Sbjct: 2 YQKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNA 61
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQ DP M+ I++T+++E ISVWNNG+GIPV HK E +++P +IFGHLLTSSNYN
Sbjct: 62 ADNKQNDPSMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEHIYIPELIFGHLLTSSNYN 121
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D ++KVTGGRNGYGAKLCNIFS++F VET+ S K
Sbjct: 122 -------------------------DMQEKVTGGRNGYGAKLCNIFSNEFTVETADSSNK 156
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K FK W NMS + +I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 157 KKFKLTWTKNMSTMGKAKITESKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMA 216
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDR------QDEDGDPVKIIYENVNPRWEVAIA 329
T V LNG ++PVK+F+ Y+++YT +D D II E+ + RWE+
Sbjct: 217 G-TCGTTVKLNGTRIPVKSFKKYMEMYTKAIKTERGEDPTSDKNDIITESPDRRWEIGFT 275
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ + D I ++ + +KKKNK
Sbjct: 276 VSDGSFQQVSFVNSIATTSGGTHVNYISDQICNKLADALKKKNKT--------------- 320
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LK Q+KNHI++F+N IVNP F SQTKE +T +
Sbjct: 321 --------------------GATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTRSSQ 360
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS C+ PKL DAN AGT
Sbjct: 361 FGSKCIVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAGT 420
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI N
Sbjct: 421 KEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQN 480
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ +GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +PTLL++P
Sbjct: 481 IKNFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKIPG 537
Query: 586 FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K SF++LPE+EEWKE + ++ KYYK
Sbjct: 538 FLIEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKEAHAHDKKWQKKYYK 588
Score = 134 bits (338), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 87/113 (76%), Gaps = 2/113 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P++L+NGA+GIGTGW T IPN+NP ++VDN+KR++ G++ +PMKPW++ F
Sbjct: 798 IEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDNLKRLMAGDELVPMKPWFRGF 857
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KGE+ GD R+ +G I D+++EI+EL + WT D+KD L+ ++ AEK
Sbjct: 858 KGEVTGSGD-RYKFSGIIKQTGDNEVEISELPIRTWTQDFKDKLEEIIK-AEK 908
>gi|313217160|emb|CBY38323.1| unnamed protein product [Oikopleura dioica]
Length = 1427
Score = 568 bits (1464), Expect = e-158, Method: Compositional matrix adjust.
Identities = 300/673 (44%), Positives = 395/673 (58%), Gaps = 121/673 (17%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E+ Y+K LEH+LLRPD Y+GS+E E MW+ + E+ ++EI ++P LYKI+DE
Sbjct: 4 TIEETYKKVDSLEHVLLRPDMYVGSIEASKENMWVFDAESTQFVQKEIEFIPALYKIYDE 63
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNK RDP N +K+ ++ E N ISV NNGKGIP+ HK+ ++VP +IFGH++T
Sbjct: 64 ILVNAADNKVRDPNQNMVKVDIDTENNKISVLNNGKGIPIEIHKEHGVYVPELIFGHMMT 123
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
SSN Y++ E K TGGRNGYGAKLCNIFS++F VET
Sbjct: 124 SSN-------------------------YDESEKKTTGGRNGYGAKLCNIFSTEFTVETV 158
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
+ K W NM K + IKS SKDD+TKI+FTPDL +F MT L DMV L +R
Sbjct: 159 NKKIGKRLTVTWTGNMKKKGNAVIKSYSKDDYTKISFTPDLKRFNMTHLSNDMVSLFRKR 218
Query: 271 AYDAAASTKDVKVFLNGEKLPVKN---FQDYVKLYTDRQDED-GDPVKIIYEN-----VN 321
AYD A +T V VFL+GE++ F+DY +YT + D G V +IYE
Sbjct: 219 AYDIAGTTPGVSVFLDGERIAFNKKDPFKDYCNMYTKGKILDTGKEVTLIYEKPENKEAK 278
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V A SD GFQ +SFVNSI T+KGG HV+A+ D +VK++ E+V KKNK
Sbjct: 279 GRWDVGFAISDNGFQNISFVNSINTSKGGHHVNAISDQLVKRLEELVNKKNK-------- 330
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
GG+ +K Q+K+H WIF+N I NP FDSQTKE
Sbjct: 331 ---------------------------GGLGVKAHQIKSHCWIFVNSQIENPAFDSQTKE 363
Query: 442 NMTLQKGSFGS-------------------------------------------TCVPKL 458
+TL K GS + KL
Sbjct: 364 TLTLVKSKHGSKPILSDAFIKKVEKSGIVETITNFMKFKENQAKGKIGGKKQKKVVILKL 423
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPLRGKLLNVREATHK 516
+DA +AG S DCTLILTEGDSAK+ A++G+ + K YGVFPLRGKLLN REA H+
Sbjct: 424 DDAPEAGKTQSKDCTLILTEGDSAKTAALAGVSSMADLKRYYGVFPLRGKLLNAREAGHQ 483
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
Q+ +N EI N+++ +G + +KY ED+K+LRYGRLMIMTDQD DGSHIKGLIINF+HH
Sbjct: 484 QLTKNEEIKNIIQAMGFDFKRKYDNPEDLKSLRYGRLMIMTDQDVDGSHIKGLIINFLHH 543
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREE-------LSFYSLPEFEEWKEETTNWHTYKIKY 629
WP ++R P +++FITPI+K ++E +FYSLPEF +W+ E N Y+++Y
Sbjct: 544 FWPNMIRGPTVQQFITPIVKIFLKKDENKQNCKKTNFYSLPEFNKWQREVPNLDAYRVEY 603
Query: 630 YKVVYVTGVLLFK 642
YK + +G FK
Sbjct: 604 YKGLGTSGPEEFK 616
Score = 127 bits (320), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 80/115 (69%), Gaps = 1/115 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP Y PI+PMVLVNG+ GIGTGW T IPNHN R+ + NI+RMI G++PL + P+Y+ +
Sbjct: 820 VEPTHYCPIVPMVLVNGSSGIGTGWSTNIPNHNIRDCIKNIRRMIEGKEPLDLVPFYEGY 879
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
+G I+ G +R V GEIA+L+ D +EITEL WT DYK L + G + D+
Sbjct: 880 RGTIESLGTARAVSFGEIALLESDVVEITELPPQVWTDDYKQKL-MKMQGGQDDK 933
Score = 60.8 bits (146), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 816 PQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKR 875
P K + R+E+ +D+E + + + DY YLL M ++LT+E+K LLK++
Sbjct: 1074 PVKAWEKKVRKEQDLELSDDEEDAADENAQLEAKSDYQYLLSMPIYNLTLEKKEALLKEK 1133
Query: 876 DDKMTELNILKKKAPTDLWSDD-LDALREKDKIH 908
+ ++LKKK PTDLW +D LD + DKI
Sbjct: 1134 GQIEHDFDVLKKKTPTDLWEEDLLDLEKTLDKIQ 1167
>gi|451854684|gb|EMD67976.1| hypothetical protein COCSADRAFT_80849 [Cochliobolus sativus ND90Pr]
Length = 1633
Score = 568 bits (1463), Expect = e-158, Method: Compositional matrix adjust.
Identities = 303/666 (45%), Positives = 400/666 (60%), Gaps = 122/666 (18%)
Query: 21 PKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITY 80
PKK ++K YQ + LEHI+ RPDTYIGSVE T+ MW+ N E+ ME R+++Y
Sbjct: 54 PKKGGASSK------YQMLTHLEHIMKRPDTYIGSVERQTDKMWVYNSESESMEYRDVSY 107
Query: 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
VPGLYKIFDEILVNA DNKQ D M+ I++TV++E+ IS+ N+GKGIP+ HK+ ++V
Sbjct: 108 VPGLYKIFDEILVNAADNKQNDKNMSEIRVTVDRESGEISIRNDGKGIPIEIHKEHGIYV 167
Query: 141 PTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNI 200
P MIF GHLLTSSNY+D++ KVTGGRNGYGAKLCN+
Sbjct: 168 PEMIF-------------------------GHLLTSSNYDDDQQKVTGGRNGYGAKLCNV 202
Query: 201 FSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLD 260
FS++F VET S+ KK +KQ W +NMSK+ +I DD+TK+++ D +F M +D
Sbjct: 203 FSTEFTVETVDSKQKKKYKQTWTENMSKMGKAKITDIKADDYTKVSWKADYARFGMEGID 262
Query: 261 KDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR------QDEDGDPVK 314
D ++ RR YD A + + VKV+LNGE++ + +F Y+++YT ED
Sbjct: 263 DDFEAMVKRRTYDMAGTLRGVKVYLNGERIKITSFAKYMEMYTKSISRDQGNSEDNKEKD 322
Query: 315 IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKD 374
+I + RW++ A SD F QVSFVNSIATT GG HV+ + D IV++++ +V KKNK
Sbjct: 323 VIITDKLERWDIGFAVSDGAFNQVSFVNSIATTSGGTHVNHIADQIVEKLMAIVNKKNK- 381
Query: 375 LGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPT 434
+ LKP Q+KNH+++F+NC IVNP
Sbjct: 382 ----------------------------------AAVKLKPAQIKNHLFLFVNCSIVNPA 407
Query: 435 FDSQTKENMTLQKGSFGSTCV--------------------------------------- 455
F SQTKE +T + FGS V
Sbjct: 408 FTSQTKEQLTTKPSQFGSKPVLSDKFLNAIAKTDVIQNIMHFAQQKADQMMKKTDGNKRN 467
Query: 456 ----PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVR 511
KL DAN AGTK+ CTLILTEG+SA LA++G VV +D +GVFPLRGKLLNVR
Sbjct: 468 RINNAKLTDANKAGTKDGHLCTLILTEGESASVLALAGRAVVNQDLFGVFPLRGKLLNVR 527
Query: 512 EATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLII 571
+AT QI++NAEI N+ K +GLQ+ K+Y TV DMK+LRYG LMIMTDQD DGSHIKGL+I
Sbjct: 528 DATVDQIMKNAEIQNIKKFMGLQHKKEY-TVADMKSLRYGHLMIMTDQDHDGSHIKGLLI 586
Query: 572 NFIHHNWPTLLRLP-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTY 625
NF+ +P+LL++P FL EFITPI+K K R SF+S+PE+EEWKE+ + +
Sbjct: 587 NFLQCQFPSLLKIPGFLLEFITPIVKVWKGDQKNPRNMKSFFSMPEYEEWKEQHAHEKGW 646
Query: 626 KIKYYK 631
KYYK
Sbjct: 647 DHKYYK 652
Score = 117 bits (294), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 78/118 (66%), Gaps = 5/118 (4%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIR----GEDPLPMKP 714
+IEPE Y+PI+P +L+NG+ GIGTGW ++IPN NP +I++NI+R ++ ED PM P
Sbjct: 861 KIEPEMYVPILPTILINGSSGIGTGWSSEIPNFNPMDIIENIRRRMQPGATKEDMTPMVP 920
Query: 715 WYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
WYK F G G R+ G + D+++EITEL V WT D+K+ L+ ++ AEK
Sbjct: 921 WYKGFTGTTTVLGPDRYQFTGTVRQTGDNEIEITELPVRYWTQDFKEKLEEIIK-AEK 977
Score = 65.1 bits (157), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 5/79 (6%)
Query: 826 QERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNIL 885
+E A E E DEA E E DYDYLLGM WSLT ER +L+K+ ++ E++ L
Sbjct: 1124 EEEDAQEDESDEA-----EVEVSANDYDYLLGMAIWSLTQERVEKLMKQIGERQEEVDTL 1178
Query: 886 KKKAPTDLWSDDLDALREK 904
K +P D+W+ DLDA ++
Sbjct: 1179 IKLSPKDIWNVDLDAFMDE 1197
>gi|25006385|dbj|BAC24012.1| DNA topoisomerase II [Trichophyton violaceum]
Length = 1094
Score = 568 bits (1463), Expect = e-158, Method: Compositional matrix adjust.
Identities = 311/653 (47%), Positives = 391/653 (59%), Gaps = 121/653 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHIL RPDTYIGSVE + MW+ N T ME RE+++VPGLYKIFDEILVNA
Sbjct: 1 YQKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNA 60
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQ DP M+ I++T+++E ISVWNNG+GIPV HK E++++P +IFGHLLTSSNYN
Sbjct: 61 ADNKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTSSNYN 120
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D ++KVTGGRNGYGAKLCNIFS++F VET+ S+ K
Sbjct: 121 -------------------------DMQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQK 155
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K FK W +NMS + +I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 156 KKFKLTWTNNMSTMGKAKITECKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMA 215
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTD----RQDED----GDPVKIIYENVNPRWEVA 327
T V LNG ++P+K+F+ Y+++YT + ED D II E+ + RWE+
Sbjct: 216 G-TCGTAVKLNGTRIPIKSFKKYMEMYTKAIKAERGEDTTSASDKNDIITESPDRRWEIG 274
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
SD FQQVSFVNSIATT GG HV+ + D I ++ + +KKKNK
Sbjct: 275 FTVSDGSFQQVSFVNSIATTSGGTHVNYISDQICNKLADALKKKNKT------------- 321
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
G LK Q+KNHI++F+N IVNP F SQTKE +T +
Sbjct: 322 ----------------------GATLKATQIKNHIFLFVNSQIVNPAFTSQTKEQLTTRP 359
Query: 448 GSFGSTCV-------------------------------------------PKLEDANDA 464
FGS CV PKL DAN A
Sbjct: 360 SQFGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKA 419
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
GTK+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI
Sbjct: 420 GTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEI 479
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
N+ +GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +PTLL++
Sbjct: 480 QNIKNFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKI 536
Query: 585 P-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P FL EFITPI+K K SF++LPE+EEWKE + ++ KYYK
Sbjct: 537 PGFLIEFITPIVKVWKGDPKNPTHTKSFFTLPEYEEWKEAHAHDKKWQKKYYK 589
Score = 138 bits (348), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 87/113 (76%), Gaps = 2/113 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P++L+NGA+GIGTGW T IPN+NP E+VDN+KR++ GE+ +PMKPW++ F
Sbjct: 799 IEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMAGEELVPMKPWFRGF 858
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KGE+ GD R+ +G I D+++EITEL + WT D+KD L+ ++ AEK
Sbjct: 859 KGEVTGSGD-RYKFSGIIKQTGDNEVEITELPIRTWTQDFKDKLEEIIK-AEK 909
>gi|302844478|ref|XP_002953779.1| hypothetical protein VOLCADRAFT_94598 [Volvox carteri f.
nagariensis]
gi|300260887|gb|EFJ45103.1| hypothetical protein VOLCADRAFT_94598 [Volvox carteri f.
nagariensis]
Length = 1126
Score = 568 bits (1463), Expect = e-158, Method: Compositional matrix adjust.
Identities = 315/662 (47%), Positives = 400/662 (60%), Gaps = 130/662 (19%)
Query: 35 IYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVN 94
+YQKK+QLEHI+LRPDTYIGS E T+W+ N + ME + + Y PGLYKIFDEILVN
Sbjct: 1 MYQKKTQLEHIILRPDTYIGSTERQPNTIWVHNGQK--MELKTVNYPPGLYKIFDEILVN 58
Query: 95 ACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
A DNK RDP M+ IK+ V+ N+I VWN+G+GIPV HK+E ++VP +IFGHLLTSSNY
Sbjct: 59 AADNKVRDPTMDTIKVDVDPANNSIRVWNSGRGIPVEVHKEEGVYVPELIFGHLLTSSNY 118
Query: 155 NDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEY 214
N D E K+TGGRNGYGAKL NIFS++F VET
Sbjct: 119 N-------------------------DSEKKITGGRNGYGAKLANIFSTEFTVETCDGSR 153
Query: 215 KKSFKQVWKDNMSKVTSPEIK-SGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYD 273
++ +KQ + +NM + +P+I + D++T ITF PDL KF M+ LD+D+V ++ RR +D
Sbjct: 154 QRRYKQTFTNNMQQKGTPKITDCKASDNWTCITFKPDLAKFGMSELDEDIVSVLRRRVFD 213
Query: 274 AAAST-KDVKVFLNGEKLPVKNFQDYVKLY----TDRQDEDGDP----VKIIYENVNPRW 324
A K VKVF NGE+L +K+FQ+YV +Y R G P + E +N RW
Sbjct: 214 MAGVLGKGVKVFYNGERLSIKSFQEYVDMYLGPKVKRTWFRGVPHDNGIPRFCERLNDRW 273
Query: 325 EVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFG 384
E+ I+ +D FQQVSFVN+I+T KGG HV+ +V+ IVK IE + KK
Sbjct: 274 EICISLTDGSFQQVSFVNAISTQKGGTHVEYIVNQIVKHCIEKLSKKT------------ 321
Query: 385 NKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQ------ 438
AKT A+KP V+NH+WIF+NC + NP FDSQ
Sbjct: 322 -------------AKT----------TAIKPAMVRNHLWIFLNCYVENPAFDSQASPFKI 358
Query: 439 ---TKENMTLQKGSFGSTC----------------------------------------- 454
TKE +TL+ SFGS C
Sbjct: 359 VLLTKETLTLRSTSFGSKCELPIPLLDKVLKAGLSDSIIKYAEFKSQKDLKKGDGVKRSR 418
Query: 455 ---VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVR 511
+ KL+DANDAG S DCTLILTEGDSAKSLAVSGLGVVGR+ YGVFPLRGKLLNVR
Sbjct: 419 LVGMAKLDDANDAGGPRSTDCTLILTEGDSAKSLAVSGLGVVGRNHYGVFPLRGKLLNVR 478
Query: 512 EATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLII 571
EA+ QI N EI N+ +I+GLQ+ + Y + +LRYG LMIMTDQD DGSHIKGLI+
Sbjct: 479 EASAVQIAANQEIQNIKQIMGLQHGRVY---DSTSSLRYGHLMIMTDQDHDGSHIKGLIM 535
Query: 572 NFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEET-TNWHTYKIKY 629
NF+H +P+LL++P F+ EFITPI+KA + RE FY++PE+E WKE N + IKY
Sbjct: 536 NFMHSFFPSLLKIPGFMLEFITPIVKARRGRETKVFYTMPEYEAWKESLDNNTSGWDIKY 595
Query: 630 YK 631
YK
Sbjct: 596 YK 597
Score = 140 bits (354), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/119 (53%), Positives = 84/119 (70%), Gaps = 4/119 (3%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+PI+P VLVNGAEGIGTGW T IPN+NPR+I+ N++R++ GE+ P+ PWY+ F
Sbjct: 807 IEPEWYLPILPTVLVNGAEGIGTGWSTFIPNYNPRDIIANLRRLLNGEEQDPLHPWYRGF 866
Query: 720 KGEIDYC----GDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
G I G +VV G +A + +E+TEL V KWT DYK+ L+TLL +KDE
Sbjct: 867 TGTITEVPHKSGSRSYVVGGLVAQTGPNTIEVTELPVRKWTQDYKEFLETLLRPQDKDE 925
>gi|269860440|ref|XP_002649941.1| DNA topoisomerase II [Enterocytozoon bieneusi H348]
gi|220066628|gb|EED44103.1| DNA topoisomerase II [Enterocytozoon bieneusi H348]
Length = 1159
Score = 567 bits (1462), Expect = e-158, Method: Compositional matrix adjust.
Identities = 304/649 (46%), Positives = 405/649 (62%), Gaps = 122/649 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E+IYQKK+ EHILLRPDTYIGSVE T++ ++ + + + + + PGLYKIFDE
Sbjct: 4 TIEEIYQKKTPKEHILLRPDTYIGSVEIDTQSAFVWDNMQEKIVLKNVKFAPGLYKIFDE 63
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNKQRDP+M IK+ +N+ + +S+ N+G GIP+ H+ E+++VP +IF
Sbjct: 64 ILVNAADNKQRDPRMTYIKVYINEMS--VSIENDGNGIPIEIHQKEQVYVPELIF----- 116
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
GHLLTSSNYND E KVTGGRNGYGAKLCNIFS F VET
Sbjct: 117 --------------------GHLLTSSNYNDNEKKVTGGRNGYGAKLCNIFSVHFEVETV 156
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
K + QV+K+NM + P I + S D+TKITF PD +F M+ D D++ + +R
Sbjct: 157 SKGRK--YSQVFKNNMEIIGKPTISAYSGKDYTKITFVPDFKRFGMSLFDSDIISIFYKR 214
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAP 330
YD A+ K+ +++LN +KL + N ++Y +LY VK++ + +N RWE+A A
Sbjct: 215 VYDMCATVKNTEIYLNDKKLMINNLKEYAQLYLSHD------VKLVTKKINDRWEIACAS 268
Query: 331 SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNV 390
+D F QVSFVNSI T+KGG HV+ V+D ++ +I VKK++K L
Sbjct: 269 TDEQFMQVSFVNSICTSKGGTHVNHVLDQLMDPLISAVKKRDKTL--------------- 313
Query: 391 KNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSF 450
LKP VKN++++FIN LI NP FDSQTKEN+TL+ +F
Sbjct: 314 ---------------------VLKPLNVKNNLFLFINALIENPIFDSQTKENLTLKSSAF 352
Query: 451 GSTC---------------------------------------------VPKLEDANDAG 465
GS C +PKLEDAN AG
Sbjct: 353 GSKCQPIDDIIKDIIKNTDIIDKIITFSKIKQAVLLKKTDGVKTTKIVGIPKLEDANFAG 412
Query: 466 TKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEIN 525
TK S +CTLILTEGDSAK+LAV+GL VVGRDKYGVFPLRGKLLNVREA++KQI++NAEI+
Sbjct: 413 TKRSSECTLILTEGDSAKTLAVAGLSVVGRDKYGVFPLRGKLLNVREASNKQIMDNAEIS 472
Query: 526 NLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR-L 584
+ KILGLQ+ K YT D +LRYG +MIMTDQD DGSHIKGLIINF+ + +P+LL+ L
Sbjct: 473 AIKKILGLQHGKTYT---DTTSLRYGHIMIMTDQDFDGSHIKGLIINFLDYFFPSLLKIL 529
Query: 585 PFLEEFITPIIKATKAREELSFYSLPEFEEWKE--ETTNWHTYKIKYYK 631
FL+EFITPI++ATK +E+ F+++PE+E++K+ E + IKYYK
Sbjct: 530 GFLQEFITPIVRATKKKEKYDFFTIPEYEKFKQQIEQIKDSGWVIKYYK 578
Score = 117 bits (292), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP +Y+PIIPMVLVNG +GIGTGW T IPNHNP +++ NIKR++ ++P M P+Y+N+
Sbjct: 788 IEPTYYVPIIPMVLVNGTDGIGTGWSTNIPNHNPLDLIKNIKRLLNNQEPEEMIPYYRNY 847
Query: 720 KGEIDYCGDSRFVVNGEI-AILDDDKLEITELQVGKWTTDYKDTLD 764
KG I +++ G++ ++ ++ + EL +G WT YK+ LD
Sbjct: 848 KGTITKINAGKYISCGKVFENINKKEINVVELPIGVWTQAYKEYLD 893
Score = 43.5 bits (101), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPC 910
+Y+YLL M SLT E+ N+L ++ ++K E N LK K+ +LW +DLD EK+ I
Sbjct: 1024 NYEYLLDMKISSLTKEKINKLREEYNNKNIEYNELKNKSIKNLWFEDLDKF-EKEYIKVM 1082
Query: 911 PGGN 914
N
Sbjct: 1083 EAEN 1086
>gi|38453813|dbj|BAD02207.1| DNA topoisomerase II [Arthroderma simii]
gi|38453815|dbj|BAD02208.1| DNA topoisomerase II [Arthroderma simii]
Length = 1089
Score = 567 bits (1462), Expect = e-158, Method: Compositional matrix adjust.
Identities = 309/651 (47%), Positives = 390/651 (59%), Gaps = 121/651 (18%)
Query: 38 KKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACD 97
K +QLEHIL RPDTYIGSVE + MW+ N T ME RE+++VPGLYKIFDEILVNA D
Sbjct: 1 KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60
Query: 98 NKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDE 157
NKQ DP M+ I++T+++E ISVWNNG+GIPV HK E++++P +IFGHLLTSSNYN
Sbjct: 61 NKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTSSNYN-- 118
Query: 158 EDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKS 217
D ++KVTGGRNGYGAKLCNIFS++F VET+ S+ KK
Sbjct: 119 -----------------------DMQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKK 155
Query: 218 FKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAS 277
FK W +NMS + +I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 156 FKLTWTNNMSTMGKAKITECKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAG- 214
Query: 278 TKDVKVFLNGEKLPVKNFQDYVKLYTD--RQDEDGDPVK------IIYENVNPRWEVAIA 329
T V LNG ++P+K+F+ Y+++YT + + DP II E+ + RWE+
Sbjct: 215 TCGTAVKLNGTRIPIKSFKKYMEMYTKAIKAERGEDPTSASDKNDIITESPDRRWEIGFT 274
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ + D I ++ + +KKKNK
Sbjct: 275 VSDGSFQQVSFVNSIATTSGGTHVNYISDQICNKLADALKKKNKT--------------- 319
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LK Q+KNHI++F+NC IVNP F SQTKE +T +
Sbjct: 320 --------------------GATLKAAQIKNHIFLFVNCQIVNPAFTSQTKEQLTTRASQ 359
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS CV PKL DAN AGT
Sbjct: 360 FGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAGT 419
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI N
Sbjct: 420 KDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQN 479
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ +GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +PTLL++P
Sbjct: 480 IKNFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKIPG 536
Query: 586 FLEEFITPIIKATKAR-----EELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K SF++LPE+EEWKE + ++ KYYK
Sbjct: 537 FLIEFITPIVKVWKGNPKNPTHSKSFFTLPEYEEWKEAHAHDKKWQKKYYK 587
Score = 138 bits (347), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 87/113 (76%), Gaps = 2/113 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P++L+NGA+GIGTGW T IPN+NP E+VDN+KR++ GE+ +PMKPW++ F
Sbjct: 797 IEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMAGEELVPMKPWFRGF 856
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KGE+ GD R+ +G I D+++EITEL + WT D+KD L+ ++ AEK
Sbjct: 857 KGEVTGSGD-RYKFSGIIKQTADNEVEITELPIRTWTQDFKDKLEEIIK-AEK 907
>gi|444320547|ref|XP_004180930.1| hypothetical protein TBLA_0E03570 [Tetrapisispora blattae CBS 6284]
gi|387513973|emb|CCH61411.1| hypothetical protein TBLA_0E03570 [Tetrapisispora blattae CBS 6284]
Length = 1368
Score = 567 bits (1462), Expect = e-158, Method: Compositional matrix adjust.
Identities = 311/656 (47%), Positives = 406/656 (61%), Gaps = 126/656 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEHIL RPDTYIGSVE + W+ + T+ M + + VPGL+KIFDEILVNA
Sbjct: 11 YQKISQLEHILKRPDTYIGSVEIQEQQQWIYDETTDCMLEKTVNIVPGLFKIFDEILVNA 70
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP M I++ +N N I V N+G GIP+ HK EK+++P +IFGHLLTSSNY+
Sbjct: 71 ADNKVRDPSMKKIEVNINPLENLIEVKNDGNGIPIEIHKKEKIYIPELIFGHLLTSSNYD 130
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D +E KVTGGRNGYGAKLCNIFS++F +ET+ S+
Sbjct: 131 D-------------------------DEKKVTGGRNGYGAKLCNIFSTEFTLETADSKTG 165
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
K + Q W++NM+ P+I + K +TK++F PDL +F M +LD+D++ + RR YD
Sbjct: 166 KKYIQKWENNMNVCHDPKITTYKKIQSYTKVSFKPDLKRFGMENLDEDILGVYRRRVYDI 225
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDGDPV------KIIYENVNPR 323
S +D+ V+LNG+ L ++NF++YV+LY RQ E+G+ I+YE +N R
Sbjct: 226 NGSVRDINVYLNGKSLKIRNFKNYVELYLKSLEKKRQLENGEDSTSQQSPTILYEKLNDR 285
Query: 324 WEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLF 383
WE+A A SD FQQ+SFVNSIATT GG HV+ +VD IV+++ +++KKK K+
Sbjct: 286 WEIAFAVSDISFQQISFVNSIATTSGGTHVNYIVDQIVRKVSDLLKKKKKN--------- 336
Query: 384 GNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENM 443
+KPFQ+KN+I+IFINCLI NP F SQTKE +
Sbjct: 337 -----------------------------IKPFQIKNNIFIFINCLIENPAFTSQTKEQL 367
Query: 444 TLQKGSFGSTC--------------------------------------------VPKLE 459
T + FGS C PKLE
Sbjct: 368 TTRVKDFGSRCDISPEYINKIMKTDLATKIFEIADENANNALKKSDGSRKSRITEYPKLE 427
Query: 460 DANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQIL 519
DAN AGTK CTLILTEGDSA SLAV+GL VVGRD YG +PLRGK+LNVREA+ QIL
Sbjct: 428 DANKAGTKEGHKCTLILTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQIL 487
Query: 520 ENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWP 579
+NAEI + KI+GLQ+ K+Y ED +LRYG LMIMTDQD DGSHIKGLIINF+ ++P
Sbjct: 488 KNAEIQAIKKIMGLQHRKRY---EDTSSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFP 544
Query: 580 TLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
LL +P FL EFITPIIK T +R+ + FY++P++E+W+EE ++ +T+K KYYK
Sbjct: 545 GLLDIPGFLVEFITPIIKVTITKPSRQTIVFYNMPDYEKWREEESHQYTWKQKYYK 600
Score = 112 bits (279), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 73/113 (64%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP+WY+P++P +LVNG+EGIGTGW T IP+ NP +I+ NIK ++ E+ M PW++ +
Sbjct: 810 VEPQWYLPVLPTLLVNGSEGIGTGWSTNIPSFNPLDIIKNIKHLMNNEEMEEMHPWFRGW 869
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G I+ G R+ + G I + + LEITEL WT+ K+ L L G EK
Sbjct: 870 TGTIEKIGYQRYRMYGRIEQIGPNTLEITELPAKVWTSTIKEYLLQGLSGTEK 922
Score = 61.2 bits (147), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 12/103 (11%)
Query: 799 SEEEEIEEVFHDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGM 858
S +E+IEE+ ++ ++ +K Q E G ++E G+ YDYLLGM
Sbjct: 1067 SIQEKIEELLEEDGTSEEEKV-EQENNDELNEINGPEEEYGT-----------YDYLLGM 1114
Query: 859 TFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
WSLT ER +LLK++ +K EL L P DLW++D+D
Sbjct: 1115 KIWSLTKERYEKLLKQKQEKEVELETLLGLTPQDLWNNDIDEF 1157
>gi|365987970|ref|XP_003670816.1| hypothetical protein NDAI_0F02550 [Naumovozyma dairenensis CBS 421]
gi|343769587|emb|CCD25573.1| hypothetical protein NDAI_0F02550 [Naumovozyma dairenensis CBS 421]
Length = 1420
Score = 567 bits (1462), Expect = e-158, Method: Compositional matrix adjust.
Identities = 311/657 (47%), Positives = 404/657 (61%), Gaps = 126/657 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEHIL RPDTYIGSVE + W+ + ET+ M + + VPGL+KIFDEI+VNA
Sbjct: 12 YQKISQLEHILKRPDTYIGSVEIQEQEQWIYDDETDCMMEKHVKIVPGLFKIFDEIVVNA 71
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP M I + + E N I V N+GKGIP+ H+ EK+ +P +IF
Sbjct: 72 ADNKVRDPTMKRIDVNIRPEENLIEVKNDGKGIPIEIHQKEKIHIPELIF---------- 121
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLLTSSNY+D+E KVTGGRNGYGAKLCNIFS++F++ET+
Sbjct: 122 ---------------GHLLTSSNYDDKEKKVTGGRNGYGAKLCNIFSTEFILETADPILG 166
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
K + Q W++NM+ P+I SK +TK++F PDL++F M LDKD++ ++ RR YD
Sbjct: 167 KKYVQKWENNMNTCHPPKITPYSKGQSYTKVSFKPDLSRFNMEELDKDILGVMRRRVYDI 226
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTD-----RQDEDGDPVKI-------IYENVNP 322
S +V V+L+G+ L ++NF++YV+LY + RQ ++G+ I +YE VN
Sbjct: 227 GGSVSNVNVYLDGKSLKIRNFKNYVELYLNSSEKSRQLDNGEDASIQSNTPPILYERVNE 286
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
WEVA A SD FQQ+SFVNSIATT GG HV+ + D IV+++ +++KKK K
Sbjct: 287 SWEVAFAVSDISFQQISFVNSIATTTGGTHVNYITDQIVRKVSDILKKKKK--------- 337
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
+KPFQ+KN+++IFINCLI NP F SQTKE
Sbjct: 338 ----------------------------KNIKPFQIKNNMFIFINCLIQNPAFTSQTKEQ 369
Query: 443 MTLQKGSFGSTCV--------------------------------------------PKL 458
MT + FGS C+ PKL
Sbjct: 370 MTTRVKDFGSKCLISDDFVNKIMKTDFATKISEIVDENETNALKKSDGTRKSRITDYPKL 429
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
EDAN AGTK+ CTLILTEGDSA SLAV+GL VVGRD YG +PLRGK+LNVREA+ QI
Sbjct: 430 EDANKAGTKDGYKCTLILTEGDSALSLAVAGLAVVGRDFYGCYPLRGKMLNVREASADQI 489
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNW 578
L+NAEI + KI+GLQ+ KKY ED K+LRYG LMIMTDQD DGSHIKGLIINF+ ++
Sbjct: 490 LKNAEIQAIKKIMGLQHKKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSF 546
Query: 579 PTLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P LL +P FL EFITPIIK T +R+ ++FY++P++E+W+ E +T+K KYYK
Sbjct: 547 PGLLDIPGFLVEFITPIIKVTVTKPSRQVIAFYNMPDYEQWRAEEAQNYTWKQKYYK 603
Score = 112 bits (281), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 73/113 (64%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+P++PM+LVNGAEGIGTGW T IP NP +IV N++ ++ GE+ M PW+K +
Sbjct: 813 VEPEWYLPVLPMILVNGAEGIGTGWSTNIPPFNPLDIVKNLRHLMNGEELENMMPWFKGW 872
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G ++ R+ + G I + + LEITEL WT+ K+ L + G E+
Sbjct: 873 GGSVEKVEHQRYRMYGRIEQIGPNTLEITELPAKTWTSTIKEYLLLGISGNER 925
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
++YLLGM WSLT ER +LLK++ ++ EL L K + +DLW+ DLD
Sbjct: 1111 FEYLLGMRIWSLTKERYEQLLKQKKEREIELEDLLKLSASDLWNIDLD 1158
>gi|410083495|ref|XP_003959325.1| hypothetical protein KAFR_0J01230 [Kazachstania africana CBS 2517]
gi|372465916|emb|CCF60190.1| hypothetical protein KAFR_0J01230 [Kazachstania africana CBS 2517]
Length = 1425
Score = 567 bits (1461), Expect = e-158, Method: Compositional matrix adjust.
Identities = 306/658 (46%), Positives = 404/658 (61%), Gaps = 129/658 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEHIL RPDTYIGS+E + W+ + T+ M + + VPGL+KIFDEILVNA
Sbjct: 12 YQKISQLEHILKRPDTYIGSIEVQEQEQWIYDETTDCMMEKHVKIVPGLFKIFDEILVNA 71
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP M I +T++ + N I V N+GKGIP+ H+ EK+++P +IF
Sbjct: 72 ADNKVRDPTMKKIDVTISPDENQIEVRNDGKGIPIEVHEKEKIYIPELIF---------- 121
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLLTSSNY+D+E KVTGGRNGYGAKLCNIFS++F++ET+ +
Sbjct: 122 ---------------GHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADPDTG 166
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
K + Q W++NM+ P+I S K +TK+TF PDL++F M LD D++ ++ RR YD
Sbjct: 167 KKYVQRWENNMNVCHPPKITSYKKGPSYTKVTFKPDLSRFNMEKLDDDILGVMRRRVYDI 226
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLY-------------TDRQDEDGDPVKIIYENVN 321
S +D+ V+LNG+ L ++NF++YV+LY D ++ P I++E V+
Sbjct: 227 NGSVRDINVYLNGKSLKIRNFKNYVELYLKSLEKKRLLDNGQDATVQNNIPT-ILHERVS 285
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RWEVA A SD FQQ+SFVNSIATT GG HV+ + D IV+++ + +KKK
Sbjct: 286 DRWEVAFAVSDISFQQISFVNSIATTSGGTHVNYITDQIVRKVSDFLKKKK--------- 336
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
++KPFQ+KN+++IF+NCLI NP F SQTKE
Sbjct: 337 -----------------------------KSIKPFQIKNNMFIFVNCLIENPAFTSQTKE 367
Query: 442 NMTLQKGSFGSTC--------------------------------------------VPK 457
+T + FGS C PK
Sbjct: 368 QLTTRVKDFGSRCDISNEYINKIMKTDLATKIFEIADENAHNALKKSDGTRKSRITEYPK 427
Query: 458 LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQ 517
LEDAN AGT+ CTL+LTEGDSA SLAV+GL VVGRD YG +PLRGK+LNVREA+ Q
Sbjct: 428 LEDANKAGTREGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQ 487
Query: 518 ILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHN 577
IL+NAEI + KI+GLQ+ KKY ED K+LRYG LMIMTDQD DGSHIKGLIINFI +
Sbjct: 488 ILKNAEIQAIKKIMGLQHKKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIINFIESS 544
Query: 578 WPTLLRLP-FLEEFITPIIKATKA---REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+P LL +P FL EFITPI+K T R+ +SFY++P++E+W+EE ++ +T+K KYYK
Sbjct: 545 FPGLLDIPGFLVEFITPIVKVTITKPRRQTISFYNMPDYEKWREEESHKYTWKQKYYK 602
Score = 112 bits (279), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 71/113 (62%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+P+IPM+LVNG EGIGTGW T IP NP +IV NIK ++ E M PW++ +
Sbjct: 812 VEPEWYLPVIPMLLVNGCEGIGTGWSTSIPPFNPEDIVRNIKHLMNNEALEEMHPWFRGW 871
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G I+ R+ + G I + + LEITEL WT+ K+ L L G++K
Sbjct: 872 DGTIEQTDPQRYRMYGRIEQVGSNTLEITELPARTWTSTIKEYLLLGLSGSDK 924
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 8/84 (9%)
Query: 826 QERQAAEGEDDEAGSQTQEE--------EDPDKDYDYLLGMTFWSLTMERKNELLKKRDD 877
++ ++++ E+ +A S+ E E+ Y+YLLGM WSLT E+ LLK++ +
Sbjct: 1079 EDDESSDAEEHDADSEHHTEGTEVINGPEEIYGSYEYLLGMRIWSLTKEKYERLLKQKQE 1138
Query: 878 KMTELNILKKKAPTDLWSDDLDAL 901
K EL +L K + D+W+ DLDA
Sbjct: 1139 KEVELEMLLKLSAKDIWNTDLDAF 1162
>gi|25006381|dbj|BAC24010.1| DNA topoisomerase II [Trichophyton rubrum]
Length = 1097
Score = 567 bits (1461), Expect = e-158, Method: Compositional matrix adjust.
Identities = 310/653 (47%), Positives = 390/653 (59%), Gaps = 121/653 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHIL RPDTYIGSVE + MW+ N T ME RE+++VPGLYKIFDEILVNA
Sbjct: 2 YQKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNA 61
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQ DP M+ I++T+++E ISVWNNG+GIPV HK E++++P +IFGHLLTSSNYN
Sbjct: 62 ADNKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTSSNYN 121
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D ++KVTGGRNGYGAKLCNIFS +F VET+ S+ K
Sbjct: 122 -------------------------DMQEKVTGGRNGYGAKLCNIFSKEFTVETADSKQK 156
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K FK W +NMS + +I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 157 KKFKLTWTNNMSTMGKAKITECKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMA 216
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTD--RQDEDGDPVK------IIYENVNPRWEVA 327
T V LNG ++P+K+F+ Y+++YT + + DP II E+ + RWE+
Sbjct: 217 G-TCGTAVKLNGTRIPIKSFKKYMEMYTKAIKAERGEDPTSASDKNDIITESPDRRWEIG 275
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
SD FQQVSFVNSIATT GG HV+ + D I ++ + +KKKNK
Sbjct: 276 FTVSDGSFQQVSFVNSIATTSGGTHVNYISDQICNKLADALKKKNKT------------- 322
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
G LK Q+KNHI++F+N IVNP F SQTKE +T +
Sbjct: 323 ----------------------GATLKATQIKNHIFLFVNSQIVNPAFTSQTKEQLTTRP 360
Query: 448 GSFGSTCV-------------------------------------------PKLEDANDA 464
FGS CV PKL DAN A
Sbjct: 361 SQFGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKA 420
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
GTK+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI
Sbjct: 421 GTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEI 480
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
N+ +GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +PTLL++
Sbjct: 481 QNIKNFIGLQHKKEYT---DTRGLRYGHLMIMTDQDYDGSHIKGLLINYLQVAFPTLLKI 537
Query: 585 P-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P FL EFITPI+K K SF++LPE+EEWKE + ++ KYYK
Sbjct: 538 PGFLIEFITPIVKVWKGDPKNPTHTKSFFTLPEYEEWKEAHAHDKKWQKKYYK 590
Score = 138 bits (348), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 87/113 (76%), Gaps = 2/113 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P++L+NGA+GIGTGW T IPN+NP E+VDN+KR++ GE+ +PMKPW++ F
Sbjct: 800 IEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMAGEELVPMKPWFRGF 859
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KGE+ GD R+ +G I D+++EITEL + WT D+KD L+ ++ AEK
Sbjct: 860 KGEVTGSGD-RYKFSGIIKQTGDNEVEITELPIRTWTQDFKDKLEEIIK-AEK 910
>gi|25006391|dbj|BAC24015.1| DNA topoisomerase II [Epidermophyton floccosum]
Length = 1091
Score = 566 bits (1459), Expect = e-158, Method: Compositional matrix adjust.
Identities = 308/651 (47%), Positives = 386/651 (59%), Gaps = 119/651 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHIL RPDTYIGSVE + MW+ N T ME RE+++VPGLYKIFDEILVNA
Sbjct: 1 YQKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNA 60
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQ DP M+ I++T+++E ISVWNNG+GIPV H E++++P +IFGHLLTSSNYN
Sbjct: 61 ADNKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHSKEQIYIPELIFGHLLTSSNYN 120
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D ++KVTGGRNGYGAKLCNIFS +F VET+ S K
Sbjct: 121 -------------------------DMQEKVTGGRNGYGAKLCNIFSKEFTVETADSHEK 155
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K FK W +NMS + +I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 156 KKFKLTWTNNMSTMGKAKISENKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMA 215
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDR------QDEDGDPVKIIYENVNPRWEVAIA 329
T V LNG ++PVK+F+ Y+++YT +D D II E+ + RWE+
Sbjct: 216 G-TCGTTVKLNGTRIPVKSFKKYMEMYTKAIKTERGEDPTSDKNDIITESPDRRWEIGFT 274
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ + D I ++ + +KKKNK
Sbjct: 275 VSDGSFQQVSFVNSIATTSGGTHVNYISDQICNKLADALKKKNKT--------------- 319
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LK Q+KNHI++F+N IVNP F SQTKE +T +
Sbjct: 320 --------------------GATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTRPSQ 359
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS C+ PKL DAN AGT
Sbjct: 360 FGSKCIVSDDFLRKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAGT 419
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI N
Sbjct: 420 KEGYHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQN 479
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ +GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +PTLL++P
Sbjct: 480 IKNFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKIPG 536
Query: 586 FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K SF++LPE+EEWK+ + ++ KYYK
Sbjct: 537 FLIEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKKTHAHDKRWQKKYYK 587
Score = 136 bits (343), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 86/113 (76%), Gaps = 2/113 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P++L+NGA+GIGTGW T IPN+NP ++VDN+KR++ GE+ +PMKPW++ F
Sbjct: 797 IEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDNLKRLMAGEELVPMKPWFRGF 856
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KGE+ GD R+ +G I D ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 857 KGEVTGSGD-RYKFSGIIKQTGDSEVEITELPIRTWTQDFKDKLEEIIK-AEK 907
>gi|255946696|ref|XP_002564115.1| DNA topoisomerase II top2-Penicillium chrysogenum [Penicillium
chrysogenum Wisconsin 54-1255]
gi|211591132|emb|CAP97358.1| DNA topoisomerase II top2-Penicillium chrysogenum [Penicillium
chrysogenum Wisconsin 54-1255]
Length = 1725
Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust.
Identities = 303/676 (44%), Positives = 396/676 (58%), Gaps = 119/676 (17%)
Query: 11 DVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRET 70
DV+ +G + + + YQK +QLEHI+ RPDTYIGS E T+ MW+ N T
Sbjct: 109 DVENESHGGDAAADSASKSGDASEKYQKLTQLEHIIKRPDTYIGSTERTTQQMWVYNSGT 168
Query: 71 NHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPV 130
ME R++++VPGLYKIFDEI+VNA DNK D MN I+IT+++E ISVWNNG+GIP+
Sbjct: 169 ELMEFRDVSFVPGLYKIFDEIVVNAADNKHNDSSMNEIRITIDREAGEISVWNNGRGIPI 228
Query: 131 VEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGR 190
H EK++VP +IF GHLLTSSNY+D + KVTGGR
Sbjct: 229 EIHSKEKIYVPELIF-------------------------GHLLTSSNYDDSQQKVTGGR 263
Query: 191 NGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPD 250
NG+GAKLCN+FS++F +ET S KK +KQ W +NM+K+ +I DD+TK+TF PD
Sbjct: 264 NGFGAKLCNVFSTEFTLETQDSRQKKKYKQTWTENMTKMGKAKITDAKGDDYTKVTFKPD 323
Query: 251 LTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD----RQ 306
KF M +D D L+ RR YD A T V V LN ++P+++F+ Y+++YT +
Sbjct: 324 FAKFGMEGIDDDFESLVKRRVYDLAG-TAGVAVKLNNTRVPIRSFRKYMEMYTKAIRKER 382
Query: 307 DEDGDPVK--IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQI 364
+DG P K II + +PRWE+ A SD FQQVSFVNSIATT GG HV+ + D I ++
Sbjct: 383 GDDGPPTKDEIITCSPDPRWEIGFAVSDGSFQQVSFVNSIATTSGGTHVNYIADQICTRL 442
Query: 365 IEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWI 424
+ VKKKNK G LK Q++NHI+I
Sbjct: 443 ADQVKKKNK-----------------------------------SGATLKSAQIRNHIFI 467
Query: 425 FINCLIVNPTFDSQTKENMTLQKGSFGSTCV----------------------------- 455
F+ LIVNP F SQTKE +T + FGS C
Sbjct: 468 FVKALIVNPAFTSQTKEQLTTKASQFGSKCPLDEDFYKKVLKTEVMSNILHFAEQKADQI 527
Query: 456 --------------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVF 501
PKL DAN AGT+ CTLILTEG+SAK LA++G VVG D +GVF
Sbjct: 528 LKKGDTGRRTRMNNPKLVDANKAGTREGHHCTLILTEGESAKGLAMAGRAVVGPDLFGVF 587
Query: 502 PLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQ 561
PLRGKLLNVR+A+ QI +N EI ++ +GLQ+ K+YT D K LRYG LMIMTDQD
Sbjct: 588 PLRGKLLNVRDASFDQISKNVEIQSIKNFIGLQHKKEYT---DTKGLRYGHLMIMTDQDH 644
Query: 562 DGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKA-----REELSFYSLPEFEEW 615
DGSHIKGL+INF+ +P+LL++P FL EFITPIIK K ++ SF+++PE +EW
Sbjct: 645 DGSHIKGLLINFLQAQFPSLLKIPEFLIEFITPIIKVWKGDPKNPTKQKSFFTMPEHDEW 704
Query: 616 KEETTNWHTYKIKYYK 631
+E + ++ KYYK
Sbjct: 705 REAHQHERGWEHKYYK 720
Score = 129 bits (323), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 83/114 (72%), Gaps = 1/114 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE ++P++PM+L+NGA+GIGTGW + IPN+NP ++V+N+KR++ GE PM+PW++
Sbjct: 929 KIEPEVFMPVVPMILINGADGIGTGWSSSIPNYNPEDVVNNLKRLMAGEPTEPMQPWFRG 988
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F GE+ G RF +G I + ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 989 FTGEVVAVGGDRFKFSGIIRECGEKEVEITELPIRTWTQDFKDKLEEIIK-AEK 1041
Score = 51.6 bits (122), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCP 911
+DYLL M WSLT ER +L ++ DK TE+++L K + D+W+ DLD ++ +
Sbjct: 1213 FDYLLSMPMWSLTQERVEKLRRQIGDKETEVDVLIKLSKEDIWTRDLDEFIQEWRFQLED 1272
Query: 912 GGNRTRGLA 920
R R +A
Sbjct: 1273 EDRRARKVA 1281
>gi|254580647|ref|XP_002496309.1| ZYRO0C15422p [Zygosaccharomyces rouxii]
gi|238939200|emb|CAR27376.1| ZYRO0C15422p [Zygosaccharomyces rouxii]
Length = 1427
Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust.
Identities = 307/668 (45%), Positives = 401/668 (60%), Gaps = 128/668 (19%)
Query: 25 TPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGL 84
T NK + E+ YQK +QLEHIL RPDTYIGSVE W+ + E++ M +E++ VPGL
Sbjct: 2 TVDNKSASER-YQKITQLEHILKRPDTYIGSVEVQESHQWIYDEESDSMVEKEVSIVPGL 60
Query: 85 YKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMI 144
+KIFDEILVNA DNK RDP M I++ ++ E N+I V N+GKGIP+ H E +++P +I
Sbjct: 61 FKIFDEILVNAADNKVRDPSMKKIEVNIDSEANSIDVKNDGKGIPIEIHNKENIYIPELI 120
Query: 145 FGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSK 204
FGHLLTSSNY+D +E KVTGGRNG+GAKLCNIFS +
Sbjct: 121 FGHLLTSSNYDD-------------------------DEKKVTGGRNGFGAKLCNIFSVE 155
Query: 205 FVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDM 263
F+VET+ + Q W++NM P+I S K +TKI+F PDL +F M +LD D
Sbjct: 156 FIVETADPGSGNKYVQRWENNMGVCHPPKITSYKKGPSYTKISFKPDLKRFNMETLDNDT 215
Query: 264 VDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR------------QDEDGD 311
+ ++ RR YD S +D+ V+LNG+ L +K F++YV+LYT + DG
Sbjct: 216 LGVMRRRVYDVNGSVRDINVYLNGKSLKIKTFKNYVELYTKSLERKRIAEGLAPEGSDGK 275
Query: 312 PVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK 371
I+YE VN WE+A+A SD FQQ+SFVNSIATT GG HV+ + D IV++I E+++K+
Sbjct: 276 SPPILYERVNDCWEIALATSDMSFQQISFVNSIATTTGGTHVNYISDQIVRKITEMLRKQ 335
Query: 372 NKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIV 431
K +K QVKN +++FINCL+
Sbjct: 336 KK--------------------------------------TVKAHQVKNLMFLFINCLVE 357
Query: 432 NPTFDSQTKENMTLQKGSFGSTC------------------------------------- 454
NP F SQTKE +T + FGS C
Sbjct: 358 NPAFSSQTKEQLTTRVKDFGSQCEISPEFIKKIMKSGLEAKILDLATENAHATLKKSDGT 417
Query: 455 -------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKL 507
PKLEDAN AGT+ CTL+LTEGDSA SLAV+GL VVGRD YG +PLRGK+
Sbjct: 418 RKNRITDYPKLEDANKAGTREGHKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKM 477
Query: 508 LNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIK 567
LNVREAT QI +NAEI + KI+GLQ+ K+Y ED KTLRYG LMIMTDQD DGSHIK
Sbjct: 478 LNVREATVDQIQKNAEIQAIKKIMGLQHRKRY---EDTKTLRYGHLMIMTDQDHDGSHIK 534
Query: 568 GLIINFIHHNWPTLLRLP-FLEEFITPIIKATKA---REELSFYSLPEFEEWKEETTNWH 623
GLIINF+ ++P LL +P FL EFITPI+K T RE +SFY++P++E+W++E ++ +
Sbjct: 535 GLIINFLDSSFPGLLNIPGFLVEFITPIVKVTITKPRREVISFYNMPDYEKWRDEESHRY 594
Query: 624 TYKIKYYK 631
+K KYYK
Sbjct: 595 KWKQKYYK 602
Score = 112 bits (279), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 71/113 (62%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PI+PM+L+NG EGIGTGW T IP NP +IV N++ ++ GE+ M PW++ +
Sbjct: 812 VEPEWYLPILPMLLINGGEGIGTGWSTNIPPFNPLDIVRNLRHLMNGEELEEMHPWFRGW 871
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G I+ G R+ V G I LEITEL WT+ K+ L L G +K
Sbjct: 872 TGTIEKIGPQRYRVYGRIEQTGPCALEITELPARMWTSTLKEHLLLGLGGNDK 924
Score = 55.1 bits (131), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
++YLLGM W+LT ER +LLK++ D+ EL L + + DLWS DLD
Sbjct: 1103 FEYLLGMKIWALTRERYEKLLKQKQDRQVELETLLQYSAKDLWSMDLDEF 1152
>gi|401837856|gb|EJT41712.1| TOP2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 1487
Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust.
Identities = 312/657 (47%), Positives = 402/657 (61%), Gaps = 126/657 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEHIL RPDTY+GSVE + W+ + ET+ M +++ VPGL+KIFDEILVNA
Sbjct: 81 YQKISQLEHILKRPDTYVGSVETQDQLQWIYDEETDCMIEKKVIIVPGLFKIFDEILVNA 140
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP M I + + E NTI V N+GKGIPV H E +++P MIF
Sbjct: 141 ADNKVRDPSMKRIDVNILPEENTIEVKNDGKGIPVEIHNKENIYIPEMIF---------- 190
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLLTSSNY+D+E KVTGGRNGYGAKLCNIFS++F++ET+
Sbjct: 191 ---------------GHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVG 235
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
K + Q W++NMS P+I S K +TK+TF PDL++F M SLD D++ ++ RR YD
Sbjct: 236 KKYIQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLSRFGMKSLDSDILGVMRRRVYDI 295
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTD-----RQDEDGDPVK-------IIYENVNP 322
S +D+ +LNG+ L ++NF++YV LY RQ ++G V I+YE +N
Sbjct: 296 NGSVRDINAYLNGKSLKIRNFRNYVGLYLKSLEKKRQLDNGQDVAAQPHIPTILYERLND 355
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RWEVA A SD FQQ+SFVNSIATT GG HV+ V D IVK+I E++KKK K
Sbjct: 356 RWEVAFAVSDISFQQISFVNSIATTMGGTHVNYVTDQIVKKISEILKKKKK--------- 406
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
++KPFQ+KN+++IFINCL+ NP F SQTKE
Sbjct: 407 ----------------------------RSVKPFQIKNNMFIFINCLVENPAFTSQTKEQ 438
Query: 443 MTLQKGSFGSTC--------------------------------------------VPKL 458
+T + FGS C PKL
Sbjct: 439 LTTRVKDFGSRCEIPIEYINKIMKTELATRMFEIADANEDNALKKSDGTRKSRITDYPKL 498
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
EDAN AG+K+ CTL+LTEGDSA SLAV+GL VVGRD YG +PLRGK+LNVREA+ QI
Sbjct: 499 EDANKAGSKDGYKCTLVLTEGDSALSLAVAGLSVVGRDYYGCYPLRGKMLNVREASADQI 558
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNW 578
+NAEI + KI+GLQ+ KKY ED K+LRYG LMIMTDQD DGSHIKGLIINF+ ++
Sbjct: 559 SKNAEIQAIKKIMGLQHRKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSF 615
Query: 579 PTLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P LL + FL +FITPIIK + ++ +SFY++P++E+W+ E ++ T+K KYYK
Sbjct: 616 PGLLDIEGFLLDFITPIIKVSITKPTKKTISFYNMPDYEKWRNEESHKFTWKQKYYK 672
Score = 115 bits (287), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 74/113 (65%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PI+PMVLVNGAEGIGTGW T IP NP EIV NI+ ++ E+ M+PW+K +
Sbjct: 882 VEPEWYLPILPMVLVNGAEGIGTGWSTYIPPFNPLEIVKNIRHLMNDEEQEQMRPWFKGW 941
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G ++ R+ + G+I + + LEITEL WT K+ L L G++K
Sbjct: 942 TGTVEEIERLRYRMYGKIEQVGTNTLEITELPARTWTLTIKEYLLLGLSGSDK 994
Score = 55.1 bits (131), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 11/102 (10%)
Query: 811 NELAKPQKTGPQLERQER-----QAAEGEDDEAGSQTQEE------EDPDKDYDYLLGMT 859
N+ KP P+ E E+ A ED E S E E+ Y+YLLGM
Sbjct: 1130 NKEGKPYYGAPKTEMTEQVDDVNSVASDEDIEEKSHEDAENSTNGPEELYGTYEYLLGMK 1189
Query: 860 FWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
WSLT ER +LLK++ ++ EL L K + D+W+ DL+A
Sbjct: 1190 IWSLTKERYEKLLKQKQEREIELENLLKLSAKDIWNADLEAF 1231
>gi|340505648|gb|EGR31961.1| topoisomerase ii beta 180kda, putative [Ichthyophthirius
multifiliis]
Length = 1481
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 299/653 (45%), Positives = 390/653 (59%), Gaps = 115/653 (17%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
S+E YQKK+QLEHILLRPDTY+GSV+ T+ +W+++++ E R ITYVP LYKIFDE
Sbjct: 3 SIEHTYQKKTQLEHILLRPDTYVGSVQQQTQQLWVLSKDGQSFENRNITYVPALYKIFDE 62
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DN QRD +M + +T++ E N IS++N+G IPV HK ++V MIFG LLT
Sbjct: 63 ILVNASDNYQRDKRMKKLDVTIDNEKNIISIYNDGASIPVQIHKQYNVYVSEMIFGQLLT 122
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
SSNYN D E KVTGGRNGYGAKL NIFS KF +ET+
Sbjct: 123 SSNYN-------------------------DHEKKVTGGRNGYGAKLTNIFSKKFSIETA 157
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
S+ K W NM + P+I ++ D+T+I+F PDL +F M LD D++DL+ +R
Sbjct: 158 DSKNKLKLTMTWSKNMQEREEPKITKYTEADYTRISFEPDLKRFHMQKLDDDILDLMKKR 217
Query: 271 AYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQD--EDGDPVKII--YENVNPRWE 325
YD A V+VFLNG+K+ + NF +Y Y D E + +K+ N RWE
Sbjct: 218 VYDMAGIIGGSVRVFLNGKKIEINNFSEYCDFYLKNSDYNESREIIKVADNKNTNNERWE 277
Query: 326 VAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
+ + S+ FQQVSFVNSI TTKGG HV+ + D + ++++E +K K K
Sbjct: 278 IIASVSEGQFQQVSFVNSICTTKGGTHVNYITDQLCERLLEKLKSKQK------------ 325
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTL 445
G +K FQ+KNHIWIFIN LI NP+FDSQTKE +TL
Sbjct: 326 -----------------------GSSNIKQFQIKNHIWIFINALIENPSFDSQTKETLTL 362
Query: 446 QKGSFGSTC---------------------------------------------VPKLED 460
++ FGS C +PKLED
Sbjct: 363 KQQDFGSQCIVSEKFLKDYLKTGILENILVQIKAKEQAKMKKALSSNKQSRLLGIPKLED 422
Query: 461 ANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILE 520
ANDAGT+ CTL +TEGDSAK+LA+SG+ VVGRDK+GVFPL+GK+LNVREA+ KQI E
Sbjct: 423 ANDAGTRLGDQCTLFVTEGDSAKALAMSGIEVVGRDKFGVFPLKGKMLNVREASVKQITE 482
Query: 521 NAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPT 580
N EI N++KI+GL+ KY E+ K+LRYG + IM DQD DGSHIKGL INFI + WP+
Sbjct: 483 NQEIQNIIKIMGLKLGAKY---ENTKSLRYGSIAIMADQDHDGSHIKGLFINFIQNFWPS 539
Query: 581 LLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEET-TNWHTYKIKYYK 631
L + FL+EF+TPI+K K + LSF+SL +F++WK N + +K KYYK
Sbjct: 540 LFEMKGFLKEFVTPIVKVRKGEQSLSFFSLHDFKKWKNSLGDNSNQWKTKYYK 592
Score = 127 bits (318), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 83/115 (72%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP++Y+PIIPMVLVNGAEGIGTGW T IP +NPREIV +I++ + GE+ + PWYK +
Sbjct: 802 VEPKYYLPIIPMVLVNGAEGIGTGWSTSIPQYNPREIVQSIQKRMEGENWEQLIPWYKGY 861
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
+GEI+ ++ V G +I+ ++ +EITEL + KWT D+K+ L+ + ++ E
Sbjct: 862 QGEIENNDKGQYNVKGRASIIGENLVEITELPIKKWTRDFKNFLEEKMESSKDKE 916
>gi|330924028|ref|XP_003300481.1| hypothetical protein PTT_11728 [Pyrenophora teres f. teres 0-1]
gi|311325363|gb|EFQ91408.1| hypothetical protein PTT_11728 [Pyrenophora teres f. teres 0-1]
Length = 1723
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 301/666 (45%), Positives = 403/666 (60%), Gaps = 122/666 (18%)
Query: 21 PKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITY 80
PKK ++K YQ + LEHI+ RPDTYIGSVE T+ MW+ N E++ ME R++TY
Sbjct: 137 PKKGGASSK------YQMLTHLEHIMKRPDTYIGSVERQTDKMWVYNSESDSMEFRDVTY 190
Query: 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
VPGLYKIFDEILVNA DNKQ D M+ I++TV++ET IS+ N+GKGIP+ HK+ ++V
Sbjct: 191 VPGLYKIFDEILVNAADNKQNDKNMSEIRVTVDRETGEISIKNDGKGIPIEIHKEHGIYV 250
Query: 141 PTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNI 200
P MIF GHLLTSSNY+D++ KVTGGRNGYGAKLCN+
Sbjct: 251 PEMIF-------------------------GHLLTSSNYDDDQQKVTGGRNGYGAKLCNV 285
Query: 201 FSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLD 260
FS++F VET S+ KK ++Q W +NMSK+ +I +D+TK+++ D +F M+ +D
Sbjct: 286 FSTEFTVETVDSKQKKKYRQTWTENMSKMGKAKISDIKSEDYTKVSWKADYARFGMSGID 345
Query: 261 KDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR------QDEDGDPVK 314
D ++ RR YD A + + VKV+LNG+++ + +F Y+++YT + ED
Sbjct: 346 DDFEAMVKRRTYDMAGTLRGVKVYLNGDRIKLTSFAKYMEMYTKSISRDQGKSEDDKEKD 405
Query: 315 IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKD 374
+I + RW++ A SD F QVSFVNSIATT GG HV+ + D IV++++ +V KKNK
Sbjct: 406 VIITDKLDRWDIGFAVSDGSFNQVSFVNSIATTSGGTHVNHIADQIVEKLMAIVNKKNK- 464
Query: 375 LGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPT 434
+ LKP Q+KNH+++F+NC IVNP
Sbjct: 465 ----------------------------------AAVKLKPAQIKNHLFLFVNCSIVNPA 490
Query: 435 FDSQTKENMTLQKGSFGSTCV--------------------------------------- 455
F SQTKE +T + FGS V
Sbjct: 491 FTSQTKEQLTTRPSQFGSKPVLSDKFLNAIAKTDVIQNIMHFAQQKADQMMKKTDGNKRN 550
Query: 456 ----PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVR 511
KL DAN AGTK+ CTLILTEG+SA LA++G VV +D +GVFPLRGKLLNVR
Sbjct: 551 RISNAKLTDANKAGTKDGHLCTLILTEGESASVLALAGRAVVNQDLFGVFPLRGKLLNVR 610
Query: 512 EATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLII 571
+AT QI++NAEI N+ K +GLQ+ K+Y T+ DMK+LRYG LMIMTDQD DGSHIKGL+I
Sbjct: 611 DATVDQIMKNAEIQNIKKFMGLQHKKEY-TMADMKSLRYGHLMIMTDQDHDGSHIKGLLI 669
Query: 572 NFIHHNWPTLLRLP-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTY 625
NF+ +P+LL++P FL EFITPI+K K R SF+S+PE+EEWKE+ + +
Sbjct: 670 NFLQCQFPSLLKIPGFLLEFITPIVKVWKGDPKNPRSMKSFFSMPEYEEWKEQHQHEKGW 729
Query: 626 KIKYYK 631
KYYK
Sbjct: 730 DHKYYK 735
Score = 116 bits (290), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 78/118 (66%), Gaps = 5/118 (4%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIR----GEDPLPMKP 714
+IEPE ++PI+P +L+NG+ GIGTGW ++IPN NP +I++NIKR ++ ED PM P
Sbjct: 944 KIEPEMFVPILPTILINGSSGIGTGWSSEIPNFNPMDIIENIKRRMQPGATKEDMTPMIP 1003
Query: 715 WYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
WYK F G G R+ G + D+++EITEL V WT D+K+ L+ ++ AEK
Sbjct: 1004 WYKGFTGTTTELGPDRYQFTGTVRQTGDNEVEITELPVRYWTQDFKEKLEEIIK-AEK 1060
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 55/87 (63%), Gaps = 5/87 (5%)
Query: 821 PQLERQERQAAEGED---DEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDD 877
P++E + +QA E ED DEA S+ + E DYDYLLGM WSLT ER +L+K+ +
Sbjct: 1197 PKVE-EAKQAGEVEDYQEDEA-SEDADVEVSANDYDYLLGMAIWSLTQERVEKLMKQIGE 1254
Query: 878 KMTELNILKKKAPTDLWSDDLDALREK 904
K E++ L K +P D+W DLDA ++
Sbjct: 1255 KQHEIDTLIKLSPKDIWKVDLDAFMDE 1281
>gi|38453807|dbj|BAD02204.1| DNA topoisomerase II [Arthroderma persicolor]
Length = 1086
Score = 565 bits (1456), Expect = e-157, Method: Compositional matrix adjust.
Identities = 307/649 (47%), Positives = 386/649 (59%), Gaps = 119/649 (18%)
Query: 38 KKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACD 97
K +QLEHIL RPDTYIGSVE + MW+ N T ME RE+++VPGLYKIFDEILVNA D
Sbjct: 1 KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60
Query: 98 NKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDE 157
NKQ DP M+ I++T+++E ISVWNNG+GIPV HK E++++P +IFGHLLTSSNYN
Sbjct: 61 NKQNDPSMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTSSNYN-- 118
Query: 158 EDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKS 217
D ++KVTGGRNGYGAKLCNIFS++F VET+ S KK
Sbjct: 119 -----------------------DMQEKVTGGRNGYGAKLCNIFSNEFTVETADSSKKKK 155
Query: 218 FKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAS 277
FK W +NMS + +I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 156 FKLTWTNNMSTMGKAKITESKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAG- 214
Query: 278 TKDVKVFLNGEKLPVKNFQDYVKLYTDR------QDEDGDPVKIIYENVNPRWEVAIAPS 331
T V LNG ++P+K+F+ Y+++YT +D D II E+ + RWE+ S
Sbjct: 215 TCGTAVKLNGTRIPIKSFKKYMEMYTKAIKTERGEDPTSDKNDIITESPDRRWEIGFTVS 274
Query: 332 DRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVK 391
D FQQVSFVNSIATT GG HV+ + D I ++ + +KKKNK
Sbjct: 275 DGSFQQVSFVNSIATTSGGTHVNYISDQICNKLADALKKKNKT----------------- 317
Query: 392 NNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFG 451
G LK Q+KNHI++F+N IVNP F SQTKE +T + FG
Sbjct: 318 ------------------GATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTRASQFG 359
Query: 452 STCV-------------------------------------------PKLEDANDAGTKN 468
S C+ PKL DAN AGTK
Sbjct: 360 SKCIVSDEFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAGTKE 419
Query: 469 SIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLV 528
CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI N+
Sbjct: 420 GHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQNIK 479
Query: 529 KILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FL 587
+GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +PTLL++P FL
Sbjct: 480 NFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKIPGFL 536
Query: 588 EEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
EFITPI+K K SF++LPE+EEWKE + ++ KYYK
Sbjct: 537 IEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKETHAHDKKWQKKYYK 585
Score = 135 bits (340), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 87/113 (76%), Gaps = 2/113 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P++L+NGA+GIGTGW T IPN+NP ++VDN+KR++ GE+ +PMKPW++ F
Sbjct: 795 IEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDNLKRLMAGEELVPMKPWFRGF 854
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KGE+ GD R+ +G I D+++EI+EL + WT D+KD L+ ++ AEK
Sbjct: 855 KGEVTGSGD-RYKFSGIIKQTADNEVEISELPIRTWTQDFKDKLEEIIK-AEK 905
>gi|38453797|dbj|BAD02199.1| DNA topoisomerase II [Arthroderma racemosum]
Length = 1089
Score = 564 bits (1454), Expect = e-157, Method: Compositional matrix adjust.
Identities = 309/649 (47%), Positives = 384/649 (59%), Gaps = 119/649 (18%)
Query: 38 KKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACD 97
K +QLEHIL RPDTYIGSVE MW+ N T ME R++++VPGLYKIFDEILVNA D
Sbjct: 1 KITQLEHILKRPDTYIGSVERTEMHMWVYNSTTELMEYRDVSFVPGLYKIFDEILVNAAD 60
Query: 98 NKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDE 157
NKQ DP MN I++T+++E ISVWNNG+GIPV H EK+++P +IFGHLLTSSNYN
Sbjct: 61 NKQNDPNMNEIRVTLDKEAGEISVWNNGRGIPVEIHSKEKIYIPELIFGHLLTSSNYN-- 118
Query: 158 EDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKS 217
D ++KVTGGRNGYGAKLCNIFS++F VET+ S+ K
Sbjct: 119 -----------------------DLQEKVTGGRNGYGAKLCNIFSNEFTVETADSKKNKK 155
Query: 218 FKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAS 277
FK W +NMS + +I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 156 FKLTWTNNMSTMGKAKITDCKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAG- 214
Query: 278 TKDVKVFLNGEKLPVKNFQDYVKLYTDR------QDEDGDPVKIIYENVNPRWEVAIAPS 331
T V LNG K+P+K F+ Y+++YT +D D II E+ + RWE+ S
Sbjct: 215 TCGTAVKLNGTKIPIKTFKKYMEMYTKAIKTERGEDPTSDKNDIITESPDRRWEIGFTVS 274
Query: 332 DRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVK 391
D FQQVSFVNSIATT GG HV+ + D I ++ + +KKKNK
Sbjct: 275 DGSFQQVSFVNSIATTSGGTHVNYISDQICNKLADALKKKNKT----------------- 317
Query: 392 NNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFG 451
G LK Q+KNHI++F+N IVNP F SQTKE +T + FG
Sbjct: 318 ------------------GATLKAAQIKNHIFLFVNAQIVNPAFTSQTKEQLTTRSSQFG 359
Query: 452 STCV-------------------------------------------PKLEDANDAGTKN 468
S CV PKL DAN AGTK
Sbjct: 360 SKCVVSDDFMKKVMKTRVMEDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAGTKE 419
Query: 469 SIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLV 528
CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +N+EI N+
Sbjct: 420 GHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNSEIQNIK 479
Query: 529 KILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FL 587
+GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +PTLL++P FL
Sbjct: 480 NFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKIPGFL 536
Query: 588 EEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
EFITPI+K K SF++LPE+EEWKE TN ++ KYYK
Sbjct: 537 IEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKEAHTNDKKWQKKYYK 585
Score = 137 bits (345), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 87/113 (76%), Gaps = 2/113 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P+VL+NGA+GIGTGW T IPN+NP E+VDN+KR++ G++ +PMKPW++ F
Sbjct: 795 IEPETYVPVVPLVLINGADGIGTGWSTSIPNYNPEEVVDNLKRLMAGDELVPMKPWFRGF 854
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KGE+ GD R+ +G I D+++EITEL + WT D+KD L+ ++ AEK
Sbjct: 855 KGEVTGSGD-RYKFSGIIKQTGDNEVEITELPIRTWTQDFKDKLEDIIK-AEK 905
>gi|452000834|gb|EMD93294.1| hypothetical protein COCHEDRAFT_1192655 [Cochliobolus
heterostrophus C5]
Length = 1631
Score = 564 bits (1454), Expect = e-157, Method: Compositional matrix adjust.
Identities = 302/666 (45%), Positives = 402/666 (60%), Gaps = 122/666 (18%)
Query: 21 PKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITY 80
PKK ++K YQ + LEHI+ RPDTYIGSVE T+ MW+ N E ME R+++Y
Sbjct: 53 PKKGGASSK------YQMLTHLEHIMKRPDTYIGSVERQTDKMWVYNSEAESMEYRDVSY 106
Query: 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
VPGLYKIFDEILVNA DNKQ D M+ I++TV++E+ IS+ N+GKGIP+ HK+ ++V
Sbjct: 107 VPGLYKIFDEILVNAADNKQNDKNMSEIRVTVDRESGEISIRNDGKGIPIEIHKEHGIYV 166
Query: 141 PTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNI 200
P MIF GHLLTSSNY+D++ KVTGGRNGYGAKLCN+
Sbjct: 167 PEMIF-------------------------GHLLTSSNYDDDQQKVTGGRNGYGAKLCNV 201
Query: 201 FSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLD 260
FS++F VET S+ KK +KQ W +NMSK+ +I DD+TK+++ D +F M +D
Sbjct: 202 FSTEFTVETVDSKQKKKYKQTWTENMSKMGKAKITDIKADDYTKVSWKADYARFGMEGID 261
Query: 261 KDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDGDPVK- 314
D ++ RR YD A + + VKV+LNGE++ + +F Y+++YT D+ + + D K
Sbjct: 262 DDFEAMVKRRTYDMAGTLRGVKVYLNGERIKITSFAKYMEMYTKSISRDQGNSEDDKEKD 321
Query: 315 IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKD 374
+I + RW++ A SD F QVSFVNSIATT GG HV+ + D IV++++ +V KKNK
Sbjct: 322 VIITDKLERWDIGFAVSDGAFNQVSFVNSIATTSGGTHVNHIADQIVEKLMAIVNKKNK- 380
Query: 375 LGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPT 434
+ LKP Q+KNH+++F+NC IVNP
Sbjct: 381 ----------------------------------AAVKLKPAQIKNHLFLFVNCSIVNPA 406
Query: 435 FDSQTKENMTLQKGSFGSTCV--------------------------------------- 455
F SQTKE +T + FGS V
Sbjct: 407 FTSQTKEQLTTKPSQFGSKPVLSDKFLNAIAKTDVIQNIMHFAQQKADQMMKKTDGNKRN 466
Query: 456 ----PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVR 511
KL DAN AGTK+ CTLILTEG+SA LA++G VV +D +GVFPLRGKLLNVR
Sbjct: 467 RINNAKLTDANKAGTKDGHLCTLILTEGESASVLALAGRAVVNQDLFGVFPLRGKLLNVR 526
Query: 512 EATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLII 571
+AT QI++N EI N+ K +GLQ+ K+Y TV DMK+LRYG LMIMTDQD DGSHIKGL+I
Sbjct: 527 DATVDQIMKNVEIQNIKKFMGLQHKKEY-TVADMKSLRYGHLMIMTDQDHDGSHIKGLLI 585
Query: 572 NFIHHNWPTLLRLP-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTY 625
NF+ +P+LL++P FL EFITPI+K K R SF+S+PE+EEWKE+ + +
Sbjct: 586 NFLQCQFPSLLKIPGFLLEFITPIVKVWKGDQKNPRNMKSFFSMPEYEEWKEQHAHEKGW 645
Query: 626 KIKYYK 631
KY+K
Sbjct: 646 DHKYFK 651
Score = 117 bits (294), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 78/118 (66%), Gaps = 5/118 (4%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIR----GEDPLPMKP 714
+IEPE Y+PI+P +L+NG+ GIGTGW ++IPN NP +I++NI+R ++ ED PM P
Sbjct: 860 KIEPEMYVPILPTILINGSSGIGTGWSSEIPNFNPMDIIENIRRRMQPGATKEDMTPMVP 919
Query: 715 WYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
WYK F G G R+ G + D+++EITEL V WT D+K+ L+ ++ AEK
Sbjct: 920 WYKGFTGTTTVLGPDRYQFTGTVRQTGDNEIEITELPVRYWTQDFKEKLEEIIK-AEK 976
Score = 67.8 bits (164), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 826 QERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNIL 885
+E A E E DEA E E DYDYLLGM WSLT ER +LLK+ +K E++ L
Sbjct: 1123 EEEDAQEDESDEA-----EVEVSANDYDYLLGMAIWSLTQERVEKLLKQIGEKQAEVDTL 1177
Query: 886 KKKAPTDLWSDDLDAL 901
K +P D+W+ DLDA
Sbjct: 1178 IKLSPKDIWNVDLDAF 1193
>gi|38453817|dbj|BAD02209.1| DNA topoisomerase II [Trichophyton tonsurans]
Length = 1089
Score = 564 bits (1454), Expect = e-157, Method: Compositional matrix adjust.
Identities = 309/651 (47%), Positives = 389/651 (59%), Gaps = 121/651 (18%)
Query: 38 KKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACD 97
K +QLEHIL RPDTYIGSVE + MW+ N T ME RE+++VPGLYKIFDEILVNA D
Sbjct: 1 KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60
Query: 98 NKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDE 157
NKQ DP M+ I++T+++E ISVWNNG+GIPV HK E++++P +IFGHLLTSSNYN
Sbjct: 61 NKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTSSNYN-- 118
Query: 158 EDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKS 217
D ++KVTGGRNGYGAKLCNIFS++F VET+ S+ KK
Sbjct: 119 -----------------------DMQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKK 155
Query: 218 FKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAS 277
FK W +NMS + +I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 156 FKLTWTNNMSTMGKAKITECKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAG- 214
Query: 278 TKDVKVFLNGEKLPVKNFQDYVKLYTD----RQDED----GDPVKIIYENVNPRWEVAIA 329
T V LNG ++P+K+F+ Y+++YT + ED D II E+ + RWE+
Sbjct: 215 TCGTSVKLNGTRIPIKSFKKYMEMYTKAIKAERGEDSTSASDKNDIITESPDRRWEIGFT 274
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ + D I ++ + +KKKNK
Sbjct: 275 VSDGSFQQVSFVNSIATTSGGTHVNYISDQICNKLADALKKKNK---------------- 318
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LK Q+KNHI++F+N IVNP F SQTKE +T +
Sbjct: 319 -------------------AGATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTRASQ 359
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS CV PKL DAN AGT
Sbjct: 360 FGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAGT 419
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI N
Sbjct: 420 KDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQN 479
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ +GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +PTLL++P
Sbjct: 480 IKNFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKIPG 536
Query: 586 FLEEFITPIIKATKAR-----EELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K SF++LPE+EEWKE + ++ KYYK
Sbjct: 537 FLIEFITPIVKVWKGNPKNPTHTKSFFTLPEYEEWKEAHAHDKKWQKKYYK 587
Score = 138 bits (347), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 87/113 (76%), Gaps = 2/113 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P++L+NGA+GIGTGW T IPN+NP E+VDN+KR++ GE+ +PMKPW++ F
Sbjct: 797 IEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMAGEELVPMKPWFRGF 856
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KGE+ GD R+ +G I D+++EITEL + WT D+KD L+ ++ AEK
Sbjct: 857 KGEVTGSGD-RYKFSGIIKQTADNEVEITELPICTWTQDFKDKLEEIIK-AEK 907
>gi|38453811|dbj|BAD02206.1| DNA topoisomerase II [Trichophyton quinckeanum]
Length = 1089
Score = 563 bits (1451), Expect = e-157, Method: Compositional matrix adjust.
Identities = 308/651 (47%), Positives = 389/651 (59%), Gaps = 121/651 (18%)
Query: 38 KKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACD 97
K +QLEHIL RPDTYIGSVE + MW+ N T ME RE+++VPGLYKIFDEILVNA D
Sbjct: 1 KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60
Query: 98 NKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDE 157
NKQ DP M+ I++T+++E ISVWNNG+GIPV HK E++++P +IFGHLLTSSNYN
Sbjct: 61 NKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTSSNYN-- 118
Query: 158 EDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKS 217
D ++KVTGGRNGYGAKLCNIFS++F VET+ S+ KK
Sbjct: 119 -----------------------DMQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKK 155
Query: 218 FKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAS 277
FK W +NMS + +I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 156 FKLTWTNNMSTMGKAKITECKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAG- 214
Query: 278 TKDVKVFLNGEKLPVKNFQDYVKLYTD--RQDEDGDPVK------IIYENVNPRWEVAIA 329
T V LNG ++P+K+F+ Y+++YT + + DP II E+ + RWE+
Sbjct: 215 TCGTAVKLNGTRIPIKSFKKYMEMYTKAIKAERGEDPTSASDKNDIITESPDRRWEIGFT 274
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ + D I ++ + +KKKNK
Sbjct: 275 VSDGSFQQVSFVNSIATTSGGTHVNYISDQICNKLADALKKKNKT--------------- 319
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LK Q+KNHI++F+N IVNP F SQTKE +T +
Sbjct: 320 --------------------GATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTRTSQ 359
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS CV PKL DAN AGT
Sbjct: 360 FGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAGT 419
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI N
Sbjct: 420 KDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQN 479
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ +GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +PTLL++P
Sbjct: 480 IKNFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKIPG 536
Query: 586 FLEEFITPIIKATKAR-----EELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K SF++LPE+EEWKE + ++ KYYK
Sbjct: 537 FLIEFITPIVKVWKGSPKNPTHTKSFFTLPEYEEWKEAHAHDKKWQKKYYK 587
Score = 138 bits (347), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 87/113 (76%), Gaps = 2/113 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P++L+NGA+GIGTGW T IPN+NP E+VDN+KR++ GE+ +PMKPW++ F
Sbjct: 797 IEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMAGEELVPMKPWFRGF 856
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KGE+ GD R+ +G I D+++EITEL + WT D+KD L+ ++ AEK
Sbjct: 857 KGEVTGSGD-RYKFSGIIKQTADNEVEITELPIRTWTQDFKDKLEEIIK-AEK 907
>gi|406864759|gb|EKD17803.1| DNA topoisomerase 2 [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 1725
Score = 563 bits (1451), Expect = e-157, Method: Compositional matrix adjust.
Identities = 310/656 (47%), Positives = 395/656 (60%), Gaps = 124/656 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHI+ RPDTYIGSVE TETMW+ N E+ ME R+IT+VPGLYKIFDEILVNA
Sbjct: 160 YQKLTQLEHIIKRPDTYIGSVEQTTETMWVFNSESQSMELRKITFVPGLYKIFDEILVNA 219
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQRDP M IK+ V++E IS+ N+G GIP+ H+ E +++P MIF
Sbjct: 220 ADNKQRDPSMKSIKVVVDREKGEISIENDGAGIPIEIHEKEGIYIPEMIF---------- 269
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLLT SNY+D+E K TGGRNGYGAKLCNIFS++F++ET S
Sbjct: 270 ---------------GHLLTGSNYDDDEAKTTGGRNGYGAKLCNIFSTEFILETQDSNTG 314
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K +KQ W +NMSK+ +I S DFT+ITFTPD KFKM ++D D L+ RR YD A
Sbjct: 315 KRYKQTWTENMSKMGKAKISSSKSSDFTRITFTPDYKKFKMENIDDDFEALVKRRVYDMA 374
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDG-DP--VKIIYEN--VNPRWE 325
+ K VKV LNG + + +F+ Y+++Y +R E+G +P +I E+ + +WE
Sbjct: 375 GTLKGVKVTLNGTLIKL-DFKKYIEMYAKAINKERGVEEGAEPPSASVIIEDPKAHAKWE 433
Query: 326 VAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
V A SD FQQVSFVNSIATT GG HV+ + D I Q++ VVKKKN
Sbjct: 434 VGFAVSDGSFQQVSFVNSIATTSGGTHVNYIADQICDQLMAVVKKKN------------- 480
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTL 445
AK G ALK Q++NHI++F+NCLIVNP F SQTKE +T
Sbjct: 481 ------------AK----------GTALKTNQIRNHIFLFVNCLIVNPAFTSQTKEQLTT 518
Query: 446 QKGSFGSTCV-------------------------------------------PKLEDAN 462
+ FGS C+ PKL DAN
Sbjct: 519 KSKQFGSKCILTDQFLKKIGQTEAVQNILNFQQAKADQVLAKSDGNKRSRMSNPKLVDAN 578
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
AGT+ +CTLILTEGDSAK LAV+G V+ D+ GVFPLRGKLLNVR+A+ QI +NA
Sbjct: 579 LAGTRRGHECTLILTEGDSAKGLAVAGRAVLDPDRIGVFPLRGKLLNVRDASIDQISKNA 638
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EI N+ + LGL++ + Y D LRYG LMIM DQD DGSHIKGL+INF+ +P+LL
Sbjct: 639 EIQNIKQFLGLKHKQNYN---DTTGLRYGHLMIMADQDHDGSHIKGLLINFLQVQFPSLL 695
Query: 583 RLP-FLEEFITPIIKATKAR------EELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+LP F EFITPI+K K + SF+++P++EEWK++ N + KYYK
Sbjct: 696 KLPDFFREFITPIVKVYKGPNPKKPISQKSFFTMPQYEEWKDQHANEKGWTHKYYK 751
Score = 108 bits (270), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 78/118 (66%), Gaps = 8/118 (6%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMI------RGED-PL-P 711
IEP Y P++PMVL+NGA+GIGTGW T IPN++P +IV N+KR + GE+ P
Sbjct: 961 IEPTMYCPVVPMVLINGADGIGTGWSTTIPNYHPLDIVKNLKRRMGRLDEGDGEEKPFQT 1020
Query: 712 MKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHG 769
M PW++ +KG + G +R+ +G I + ++++EITEL + WT DYK L+ ++ G
Sbjct: 1021 MVPWFRGWKGTPEEAGPNRYNFDGVIKEMGNNEVEITELPIRMWTDDYKAKLEEIIKG 1078
Score = 55.5 bits (132), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 97/225 (43%), Gaps = 46/225 (20%)
Query: 811 NELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNE 870
N+ K +T +E E +A DD+AG+ +D+DYLLG+ WSLT ER +
Sbjct: 1220 NDAKKSGETDDVVENDEEVSA---DDDAGA---------RDFDYLLGLPIWSLTQERVEK 1267
Query: 871 LLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCPGGNRTRGLALKRQTRYQPS 930
L + K E + ++K DLW +DLD + ++ + + + R T + S
Sbjct: 1268 LKAQMAAKKVEHDTMEKLTEKDLWCEDLDKFVNEWEVQLAEEADYQKTI---RNTNRRAS 1324
Query: 931 NRV---LTSRDEPMVVSSGEDAPP--PTKASPVK-------------------KKKPAAK 966
++ TS+ + + + P P KA+P K K K +A+
Sbjct: 1325 RKIGAGKTSKAKAKYADNDYNPKPSKPLKANPAKSAVKVEQKTHQRFLDMFASKPKQSAE 1384
Query: 967 RPAPKSDSSDLSDSDGDSDFASRKKKTAAAKKAKPAKKESEYSST 1011
+ + + ++SD D DF A K AKPA E S++
Sbjct: 1385 TNSAEDEFHEISDGMSDGDF-------EALKAAKPAAVEKSTSTS 1422
>gi|38453809|dbj|BAD02205.1| DNA topoisomerase II [Trichophyton interdigitale]
Length = 1089
Score = 563 bits (1451), Expect = e-157, Method: Compositional matrix adjust.
Identities = 308/651 (47%), Positives = 389/651 (59%), Gaps = 121/651 (18%)
Query: 38 KKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACD 97
K +QLEHIL RPDTYIGSVE + MW+ N T ME RE+++VPGLYKIFDEILVNA D
Sbjct: 1 KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60
Query: 98 NKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDE 157
NKQ DP M+ I++T+++E ISVWNNG+GIPV HK E++++P +IFGHLLTSSNYN
Sbjct: 61 NKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTSSNYN-- 118
Query: 158 EDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKS 217
D ++KVTGGRNGYGAKLCNIFS++F VET+ S+ KK
Sbjct: 119 -----------------------DMQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKK 155
Query: 218 FKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAS 277
FK W +NMS + +I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 156 FKLTWTNNMSTMGKAKITECKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAG- 214
Query: 278 TKDVKVFLNGEKLPVKNFQDYVKLYTD--RQDEDGDPVK------IIYENVNPRWEVAIA 329
T V LNG ++P+K+F+ Y+++YT + + DP II E+ + RWE+
Sbjct: 215 TCGTAVKLNGTRIPIKSFKKYMEMYTKAIKAERGEDPTSASDKNDIITESPDRRWEIGFT 274
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ + D I ++ + +KKKNK
Sbjct: 275 VSDGSFQQVSFVNSIATTSGGTHVNYISDQICNKLADALKKKNKT--------------- 319
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LK Q+KNHI++F+N IVNP F SQTKE +T +
Sbjct: 320 --------------------GATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTRASQ 359
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS CV PKL DAN AGT
Sbjct: 360 FGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAGT 419
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI N
Sbjct: 420 KDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQN 479
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ +GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +PTLL++P
Sbjct: 480 IKNFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKIPG 536
Query: 586 FLEEFITPIIKATKAR-----EELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K SF++LPE+EEWKE + ++ KYYK
Sbjct: 537 FLIEFITPIVKVWKGNPKNPTHTKSFFTLPEYEEWKEAHAHDKKWQKKYYK 587
Score = 138 bits (347), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 87/113 (76%), Gaps = 2/113 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P++L+NGA+GIGTGW T IPN+NP E+VDN+KR++ GE+ +PMKPW++ F
Sbjct: 797 IEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMAGEELVPMKPWFRGF 856
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KGE+ GD R+ +G I D+++EITEL + WT D+KD L+ ++ AEK
Sbjct: 857 KGEVTGSGD-RYKFSGIIKQTADNEVEITELPIRTWTQDFKDKLEEIIK-AEK 907
>gi|403344015|gb|EJY71343.1| DNA topoisomerase 2 [Oxytricha trifallax]
Length = 1554
Score = 563 bits (1451), Expect = e-157, Method: Compositional matrix adjust.
Identities = 311/691 (45%), Positives = 408/691 (59%), Gaps = 134/691 (19%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
SVEKIYQKK+QLEH+LLRPDTY+GS E I + +W+ + +T + ++I+Y P LYKIFDE
Sbjct: 5 SVEKIYQKKTQLEHVLLRPDTYVGSTEKIDQILWIFDEKTEKFKEKKISYTPALYKIFDE 64
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIF----- 145
+LVNA DN QRD K + IK+ +NQ N+IS++NNG +PVV HK+ K +VP ++F
Sbjct: 65 VLVNAADNYQRDKKTSQIKVNINQAKNSISIYNNGSTVPVVIHKEHKCYVPELVFGKILQ 124
Query: 146 ------GHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCN 199
GHLLTSSNY +D E K TGGRNG+GAKL N
Sbjct: 125 KLLIHLGHLLTSSNY-------------------------DDTEKKTTGGRNGFGAKLTN 159
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKD--DFTKITFTPDLTKFKMT 257
IFS KF VE S+ KK +KQ + +N+ V P I S D D+ +TF PDL +F M
Sbjct: 160 IFSKKFTVEIGDSKNKKHYKQEFTNNLQNVGEPTISPYSPDQNDYIIVTFQPDLKRFGMK 219
Query: 258 SLDKDMVDLITRRAYD-AAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKII 316
L+ D+V L+ +R YD A S K VKV+LN +KL ++ F+ YV LY ++ P K
Sbjct: 220 ELENDIVGLLKKRVYDLAGTSPKSVKVYLNEKKLEIETFEQYVDLYFNK----TVPQK-F 274
Query: 317 YENVNPRWEVAIAPSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDL 375
YE PRWE+ +A D FQQVSFVNSI T +GG+HV+ V D IV ++E ++KK+K +
Sbjct: 275 YEKCGPRWEICVAVLDLDQFQQVSFVNSICTVRGGQHVNHVSDQIVNNLLEAIQKKHKKI 334
Query: 376 GCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTF 435
LKPFQ++ ++W+FIN LI NP F
Sbjct: 335 ------------------------------------ELKPFQIRQNLWVFINALIENPAF 358
Query: 436 DSQTKENMTLQKGSFGSTC----------------------------------------- 454
DSQTKE +T + +FGS C
Sbjct: 359 DSQTKETLTSRLSTFGSRCDISEKFLSKIAKSGIIEDIVAKAEMKEAMKLKKELGTGVKK 418
Query: 455 -----VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLN 509
+PKLEDAN AGT S C LILTEGDSAKSLA+SGL VVGRD++GVFPLRGKLLN
Sbjct: 419 KKLFGIPKLEDANLAGTSESESCILILTEGDSAKSLAMSGLQVVGRDRFGVFPLRGKLLN 478
Query: 510 VREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGL 569
VR+ KQIL+N EI N++KILGL ++Y +D+KTLRYG +MIM DQD DGSHIKGL
Sbjct: 479 VRDCGMKQILDNEEIQNIIKILGLYMGRQY---DDLKTLRYGSIMIMADQDHDGSHIKGL 535
Query: 570 IINFIHHNWPTLL-RLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKE--ETTNWHTY 625
IINFIH+ WP+L+ + P F++EF+TPIIKAT E L F+++ E+E+W + T +Y
Sbjct: 536 IINFIHNFWPSLIKKFPTFVKEFVTPIIKATSHNECLQFFTIAEYEKWAQLKGTNELKSY 595
Query: 626 KIKYYKVVYVTGVLLFKMNLHKVTSDSISMF 656
+IKYYK + + L K + I+ +
Sbjct: 596 RIKYYKGLGTSTALEAKQYFQSIKKHQINFY 626
Score = 115 bits (288), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 81/126 (64%), Gaps = 18/126 (14%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE+Y+P++P+VL+NGAEGIGTGW T IP +P I+ NIKR + G+ L M+PWYK F
Sbjct: 811 IEPEFYVPVLPLVLINGAEGIGTGWSTYIPCFSPIHIIHNIKRHLEGKPFLRMQPWYKGF 870
Query: 720 KGEID----------YCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHG 769
G+I+ Y +F V+ E +KL ITEL + KWT +YK+ L+ L
Sbjct: 871 TGQIEPKQNDESGLSYIDKGKFKVDKE-----RNKLIITELPLQKWTREYKNFLEEL--- 922
Query: 770 AEKDEV 775
A+KDE+
Sbjct: 923 AQKDEI 928
Score = 40.8 bits (94), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 18/98 (18%)
Query: 812 ELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWS-------LT 864
E+ QK Q + Q +G+D + Q D +DY+YLL M +S L
Sbjct: 1063 EIHGHQKQNLQQVENQPQEKQGKDAKKNFQL----DKRQDYNYLLNMKIFSFVEDQLVLL 1118
Query: 865 MERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALR 902
+ NE+ +KR D L++K P DLW DLD ++
Sbjct: 1119 KTKMNEIDEKRQD-------LQRKTPEDLWRIDLDQVQ 1149
>gi|291000712|ref|XP_002682923.1| DNA topoisomerase II [Naegleria gruberi]
gi|284096551|gb|EFC50179.1| DNA topoisomerase II [Naegleria gruberi]
Length = 1457
Score = 563 bits (1451), Expect = e-157, Method: Compositional matrix adjust.
Identities = 316/680 (46%), Positives = 408/680 (60%), Gaps = 131/680 (19%)
Query: 2 SSDESDFDPDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVE-PIT 60
S DE +F + N N K KT VE+IYQKKS E ILLRPDTY+GSV
Sbjct: 30 SDDEVEFIDHDESNNN----KNKT------VEEIYQKKSLREQILLRPDTYVGSVNMQEG 79
Query: 61 ETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTIS 120
E MW+ + E M+ + I +VP LYKIFDEILVNA D+ RD N IK+T+N E N IS
Sbjct: 80 EDMWIWDDEDKRMKMKTIKFVPALYKIFDEILVNAADHSVRDETCNKIKVTINPEQNEIS 139
Query: 121 VWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYN 180
V+NNG GIPV H + K++VPTMI FGHLLTSSN++
Sbjct: 140 VYNNGAGIPVKIHAEHKIYVPTMI-------------------------FGHLLTSSNFD 174
Query: 181 DEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK- 239
D + +VTGGRNGYGAKL NIFS KF+VET SE KK F+Q W NM K P+I + SK
Sbjct: 175 DTQKRVTGGRNGYGAKLTNIFSEKFIVETVDSEEKKKFRQTWTQNMEKEEEPKITTCSKA 234
Query: 240 DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTK-DVKVFLNGEKLP-VKNFQD 297
+ +T+ITF PDL+KF M LD D+V L+ +R YD A + K + ++LNG+K+ +K F+D
Sbjct: 235 ESYTEITFYPDLSKFGMDKLDDDIVSLLKKRVYDLAGTLKTGIGIYLNGKKITGMKTFKD 294
Query: 298 YVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVV 357
YVKLYT ++ I Y RW+V I S+ QQVSFVNSI TTKGG+HVD +V
Sbjct: 295 YVKLYTIDKE-------IHYFEDGKRWKVGITLSEGSMQQVSFVNSICTTKGGKHVDHIV 347
Query: 358 DAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQ 417
+ + I + + KKN +KP
Sbjct: 348 NQVSDNIKKALVKKNN--------------------------------------TIKPAY 369
Query: 418 VKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC----------------------- 454
+KN +W+F++ LI+NP+FDSQ+KE +T FGS C
Sbjct: 370 IKNQLWVFVSSLIINPSFDSQSKETLTTSMKDFGSKCKLDEAFLKKVTKMASEAVLKYAD 429
Query: 455 --------------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVG 494
+ KL+DANDAG+KNS CTLILTEGDSAK+LAV GL VVG
Sbjct: 430 FKSEKALNKKSGTKKSRLTGISKLDDANDAGSKNSEKCTLILTEGDSAKALAVGGLSVVG 489
Query: 495 RDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLM 554
RD YGVFPL+GK LNVR+ ++++N EI+ L KILGL++ K YT ED+K+LRYG +M
Sbjct: 490 RDYYGVFPLKGKPLNVRDCKLDKVVKNEEISTLAKILGLKFDKTYTK-EDIKSLRYGSIM 548
Query: 555 IMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKAT--KAREELSFYSLPE 611
IM DQD DGSHIKGL+INFIH WP+LL++P FL+EFITPI+KAT + ++ ++F+S+PE
Sbjct: 549 IMADQDHDGSHIKGLLINFIHKFWPSLLKIPGFLKEFITPIVKATNNRTKKAVTFFSIPE 608
Query: 612 FEEWKEETTNWHTYKIKYYK 631
+E WKE ++ + IKYYK
Sbjct: 609 YETWKEGLSDTKGWTIKYYK 628
Score = 114 bits (286), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 76/115 (66%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP +Y+PI+PMVLVNG+EGIGT W T I +NP +IV+ +K +I+GE+ PWYK F
Sbjct: 837 IEPRFYVPILPMVLVNGSEGIGTAWSTNIETYNPVDIVEGLKALIKGEEAKEFHPWYKGF 896
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
G I+ +++ G I +DD+ L+I+EL + WT +K+ L+ ++ + D+
Sbjct: 897 DGIIERLAPTKWQTKGVIEKIDDNTLDISELPIRIWTESFKERLEKMMEAQQVDD 951
>gi|38453805|dbj|BAD02203.1| DNA topoisomerase II [Arthroderma fulvum]
Length = 1086
Score = 563 bits (1451), Expect = e-157, Method: Compositional matrix adjust.
Identities = 307/649 (47%), Positives = 384/649 (59%), Gaps = 119/649 (18%)
Query: 38 KKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACD 97
K +QLEHIL RPDTYIGSVE + MW+ N T ME RE+++VPGLYKIFDEILVNA D
Sbjct: 1 KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60
Query: 98 NKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDE 157
NKQ D M+ I++T+++E ISVWNNG+GIPV HK E +++P +IFGHLLTSSNYN
Sbjct: 61 NKQNDSNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEHIYIPELIFGHLLTSSNYN-- 118
Query: 158 EDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKS 217
D ++KVTGGRNGYGAKLCNIFS++F VET+ S KK
Sbjct: 119 -----------------------DMQEKVTGGRNGYGAKLCNIFSTEFTVETADSSNKKK 155
Query: 218 FKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAS 277
FK W +NMS + +I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 156 FKLTWTNNMSTMGKAKITESKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAG- 214
Query: 278 TKDVKVFLNGEKLPVKNFQDYVKLYTDR------QDEDGDPVKIIYENVNPRWEVAIAPS 331
T V LNG ++P+K F+ Y+++YT +D D II E+ + RWE+ S
Sbjct: 215 TCGTTVKLNGTRIPIKTFKKYMEMYTKAIKTERGEDPTSDKNDIITESPDRRWEIGFTVS 274
Query: 332 DRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVK 391
D FQQVSFVNSIATT GG HV+ + D I ++ + +KKKNK
Sbjct: 275 DGSFQQVSFVNSIATTSGGTHVNYISDQICNKLADALKKKNKT----------------- 317
Query: 392 NNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFG 451
G LKP Q+KNHI++F+N IVNP F SQTKE +T + FG
Sbjct: 318 ------------------GATLKPAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTRSSQFG 359
Query: 452 STCV-------------------------------------------PKLEDANDAGTKN 468
S C+ PKL DAN AGTK
Sbjct: 360 SKCIVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAGTKE 419
Query: 469 SIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLV 528
CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI N+
Sbjct: 420 GHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQNIK 479
Query: 529 KILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FL 587
+GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +PTLL++P FL
Sbjct: 480 NFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKIPGFL 536
Query: 588 EEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
EFITPI+K K SF++LPE+EEWKE + ++ KYYK
Sbjct: 537 IEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKEAHAHDKKWQKKYYK 585
Score = 134 bits (337), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 87/113 (76%), Gaps = 2/113 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P++L+NGA+GIGTGW T IPN+NP ++VDN+KR++ G++ +PMKPW++ F
Sbjct: 795 IEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDNLKRLMAGDELVPMKPWFRGF 854
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KGE+ GD R+ +G I D+++EI+EL + WT D+KD L+ ++ AEK
Sbjct: 855 KGEVTGSGD-RYKFSGIIKQTGDNEVEISELPIRTWTQDFKDKLEEIIK-AEK 905
>gi|328871183|gb|EGG19554.1| DNA topoisomerase II [Dictyostelium fasciculatum]
Length = 1574
Score = 563 bits (1451), Expect = e-157, Method: Compositional matrix adjust.
Identities = 322/688 (46%), Positives = 417/688 (60%), Gaps = 126/688 (18%)
Query: 1 MSSDESDFDPDVQQNGN-GPSPKKK---TPANKMSVEKIYQKKSQLEHILLRPDTYIGSV 56
++S +SD D D + PKKK + + +VE+IYQKK L+ ILLRPDTYIGS+
Sbjct: 108 VTSVDSDIDLDSASDSEVEEQPKKKIVSSSGKEKTVEEIYQKKDLLDQILLRPDTYIGSI 167
Query: 57 EPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPK--MNCIKITVNQ 114
E E +W+ E + M++R+ +VPGLYKIFDEILVNA DN QR M IK+ +N
Sbjct: 168 EKQEEELWIW--ENDRMKKRKTVFVPGLYKIFDEILVNAADNLQRKDGQPMKSIKVEINA 225
Query: 115 ETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLL 174
N ISVWN+GKG+PV HK EKM VP ++FGHLL
Sbjct: 226 NDNRISVWNDGKGVPVEMHKGEKM-------------------------QVPELVFGHLL 260
Query: 175 TSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI 234
TSSNY+D E+++ GGRNG+GAKL N FS KF+VE + S KK FKQ + NM + P I
Sbjct: 261 TSSNYDDSEERLAGGRNGFGAKLTNAFSQKFLVECADSARKKLFKQTFTKNMKQRDEPVI 320
Query: 235 KSGSK-DDFTKITFTPDLTKFKMT-SLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPV 292
+S +K D+TKITF PDL +F MT D D ++L+T+R YD A + +KV+LNG+ +
Sbjct: 321 ESYTKATDYTKITFHPDLARFGMTRLDDDDNLELLTKRVYDIAGCNQSLKVYLNGKLIGF 380
Query: 293 KNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRH 352
+F DY+ Y +D++ PV ++YE VNPRWE+A+A SD QQVSFVNSI T KGG H
Sbjct: 381 NSFTDYIDTYF--KDDENAPV-VVYERVNPRWEIAVACSDGTPQQVSFVNSICTNKGGTH 437
Query: 353 VDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMA 412
V + I + II V KKNK GG+
Sbjct: 438 VTYALTKITEAIIAQVAKKNK-----------------------------------GGIE 462
Query: 413 LKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTCVP---------------- 456
+KP VKNH++IF+NCLIVNP FDSQTKE + + ++GSTC+P
Sbjct: 463 MKPSFVKNHLFIFVNCLIVNPAFDSQTKETCSSKVSTYGSTCIPSDKFLKSVCETKTGIV 522
Query: 457 -------------------------------KLEDANDAGTKNSIDCTLILTEGDSAKSL 485
KL++AN AGTK S DCTLILTEGDSAK+L
Sbjct: 523 DQIISWAKHKETVDLKKTTPKATKKGRLNIEKLDEANFAGTKKSEDCTLILTEGDSAKTL 582
Query: 486 AVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDM 545
A +G+ VVG D YGVFPLRGK++NVRE +H+ IL N EI N+ +I+G Q++ Y +++
Sbjct: 583 ATAGISVVGWDHYGVFPLRGKVINVREVSHRSILANEEIRNIFEIMGFQHNVNY---DNI 639
Query: 546 KTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREE- 603
TLRYG LMIMTDQD DGSHIKGLI+NFIHH WP+LL++ FL EFITPIIKA K + +
Sbjct: 640 STLRYGHLMIMTDQDHDGSHIKGLILNFIHHFWPSLLKIDGFLMEFITPIIKAFKGKNKP 699
Query: 604 LSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+SFY++PE+ +WK ET Y+IKYYK
Sbjct: 700 ISFYTIPEYLKWK-ETNGGKGYEIKYYK 726
Score = 105 bits (263), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 74/109 (67%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+++P+WY+P IP VLVNG+ GIGTG+ + IPN+NPR+++ ++ ++ ++ +KPWY+
Sbjct: 935 KVQPKWYMPTIPFVLVNGSSGIGTGYSSSIPNYNPRDLIQCMRDLLDEKEMTDIKPWYRG 994
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
F+G I+ ++ G L + +LE+TEL +G WT +K+ L+ L+
Sbjct: 995 FRGSIEPKSHQTYLCKGAWKKLSEYELEVTELPIGTWTQSFKELLELLV 1043
Score = 49.7 bits (117), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 65/131 (49%), Gaps = 20/131 (15%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHP 909
K YDYLL M WSLTMER ++L++RD K EL+ + ++ +DL L E+ I
Sbjct: 1283 KGYDYLLSMPLWSLTMERAKKILEERDQKKGELDKMVGTPINKIYKNDLKTLEEELDIQ- 1341
Query: 910 CPGGNR---TRGLALKRQTRYQ---PSNRVLTSRDEPMVVSSGEDA--------PPP--- 952
+R +G AL++ ++ + P R S + S GE PPP
Sbjct: 1342 -DEDDRLLLKKGEALQKVSKGKKPLPKARRRRSSKDSDSDSDGEGGSKKKSTWKPPPRPS 1400
Query: 953 -TKASPVKKKK 962
KA+PVK+KK
Sbjct: 1401 SKKAAPVKRKK 1411
>gi|260941161|ref|XP_002614747.1| hypothetical protein CLUG_05525 [Clavispora lusitaniae ATCC 42720]
gi|238851933|gb|EEQ41397.1| hypothetical protein CLUG_05525 [Clavispora lusitaniae ATCC 42720]
Length = 760
Score = 563 bits (1451), Expect = e-157, Method: Compositional matrix adjust.
Identities = 328/710 (46%), Positives = 417/710 (58%), Gaps = 144/710 (20%)
Query: 1 MSSDESDF--DPDVQQNGNGPSPKKK-------------TPANKMSVEKIYQKKSQLEHI 45
MS + D+ D DV+ P P+KK TP + + + YQK SQLEHI
Sbjct: 1 MSESDGDYFSDSDVE-----PVPRKKSKTSESTPPSSNGTPGPRSNASEQYQKLSQLEHI 55
Query: 46 LLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKM 105
L RPDTYIGSVE MW + E+ M +E+T VPGLYKIFDEILVNA DNK RDP M
Sbjct: 56 LKRPDTYIGSVEKNKVEMWCFDSESESMVFKEVTIVPGLYKIFDEILVNAADNKIRDPSM 115
Query: 106 NCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVV 165
IK+ V+ NTISV N+G+GIPV H E+M++P MIFG+LLTSSNY
Sbjct: 116 KNIKVNVDAPNNTISVMNDGRGIPVEIHTKEQMYIPEMIFGNLLTSSNY----------- 164
Query: 166 PTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDN 225
+D++ KVTGGRNG+GAKLCNIFS++F VET+ K + Q W DN
Sbjct: 165 --------------DDDQKKVTGGRNGFGAKLCNIFSTEFTVETADQNTGKLYIQTWTDN 210
Query: 226 MSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVF 284
MSKV P+I K +K ++TK+TF PDLTKF M +LD+D++ ++ RR YD + KD ++
Sbjct: 211 MSKVGKPKITKVKNKKEYTKVTFKPDLTKFNMDALDEDILAVLNRRVYDLCGTVKDCNIY 270
Query: 285 LNGEKLPVKNFQDYVKLYTD----RQDEDGDPV---KIIYENVNPRWEVAIAPSDRGFQQ 337
LN +KL ++NF+ YV++Y R + V I+YE VN RWE+A A SD F Q
Sbjct: 271 LNEKKLAIRNFKGYVEMYVKAIQARSPQIAGDVTAPSIVYEQVNERWELAFAVSDGNFNQ 330
Query: 338 VSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQM 397
VSFVNSIATT GG HV V D I+ +++ + K+ K G K
Sbjct: 331 VSFVNSIATTAGGTHVKYVTDQIIDKLLAELNKQEK----------GKK----------- 369
Query: 398 AKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS----- 452
+ +K Q+KNHI+IF+NCLI NP F SQTKE +T + F S
Sbjct: 370 ------------KLMIKANQIKNHIFIFVNCLIENPAFTSQTKEQLTTRASQFASKQKDK 417
Query: 453 -------------TCV------------------------------PKLEDANDAGTKNS 469
T + KL DAN AGTK
Sbjct: 418 VTITDQFIKKILKTNIRETIQSIVDANEGKALSKDDGKRRTRIKDQAKLVDANKAGTKEG 477
Query: 470 IDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVK 529
CTLILTEGDSAKSLAV+G+ V+GRD YG FPLRGKLLNVR+A+ +QI +NAEI L +
Sbjct: 478 HKCTLILTEGDSAKSLAVAGMAVIGRDYYGCFPLRGKLLNVRDASTEQIAKNAEITALKQ 537
Query: 530 ILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLE 588
I+GLQ+ K Y T+E++K LRYG +MIMTDQD DGSHIKGL+INF ++P LL +P FL
Sbjct: 538 IIGLQHRKHY-TLENIKDLRYGHVMIMTDQDHDGSHIKGLLINFFESSFPGLLNIPGFLL 596
Query: 589 EFITPIIKAT------KAREELSFYSLPEFEEWKE-ETTNWHTYKIKYYK 631
EFITPI+K T +A +SFYS+PEFEEW++ E TN + KYYK
Sbjct: 597 EFITPIVKVTIKGRGRQAANVISFYSMPEFEEWRDTEGTNCR-WTHKYYK 645
>gi|38453799|dbj|BAD02200.1| DNA topoisomerase II [Arthroderma obtusum]
Length = 1086
Score = 563 bits (1451), Expect = e-157, Method: Compositional matrix adjust.
Identities = 308/649 (47%), Positives = 385/649 (59%), Gaps = 119/649 (18%)
Query: 38 KKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACD 97
K +QLEHIL RPDTYIGSVE + MW+ N T ME RE+++VPGLYKIFDEILVNA D
Sbjct: 1 KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60
Query: 98 NKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDE 157
NKQ DP M+ I++T+++E ISVWNNG GIPV HK E++++P +IFGHLLTSSNYN
Sbjct: 61 NKQNDPNMSEIRVTLDKEAGEISVWNNGHGIPVEIHKKEQIYIPELIFGHLLTSSNYN-- 118
Query: 158 EDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKS 217
D ++KVTGGRNGYGAKLCNIFS++F VET+ S KK
Sbjct: 119 -----------------------DMQEKVTGGRNGYGAKLCNIFSNEFTVETADSSNKKK 155
Query: 218 FKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAS 277
FK W +NMS + +I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 156 FKLTWMNNMSTMGKAKITESKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAG- 214
Query: 278 TKDVKVFLNGEKLPVKNFQDYVKLYTDR------QDEDGDPVKIIYENVNPRWEVAIAPS 331
T V LNG ++PVK+F+ Y+++YT +D D II E+ + RWE+ S
Sbjct: 215 TCGTTVKLNGTRIPVKSFKKYMEMYTKAIKTERGEDPTSDKNDIITESPDRRWEIGFTVS 274
Query: 332 DRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVK 391
D FQQVSFVNSIATT GG HV+ + D I ++ + +KKKNK
Sbjct: 275 DGSFQQVSFVNSIATTSGGTHVNYISDQICNKLADALKKKNKT----------------- 317
Query: 392 NNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFG 451
G LK Q+KNHI++F+N IVNP F SQTKE +T + FG
Sbjct: 318 ------------------GATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTRPSQFG 359
Query: 452 STCV-------------------------------------------PKLEDANDAGTKN 468
S C+ PKL DAN AGTK
Sbjct: 360 SKCIVSDEFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAGTKE 419
Query: 469 SIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLV 528
CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI N+
Sbjct: 420 GHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQNIK 479
Query: 529 KILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FL 587
+GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +PTLL++P FL
Sbjct: 480 NFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKIPGFL 536
Query: 588 EEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
EFITPI+K K SF++LPE+EEWKE + ++ KYYK
Sbjct: 537 IEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKEAHAHDKKWQKKYYK 585
Score = 137 bits (344), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 84/108 (77%), Gaps = 1/108 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P++L+NGA+GIGTGW T IPN+NP ++VDN+KR++ GE+ +PMKPW++ F
Sbjct: 795 IEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDNLKRLMAGEELVPMKPWFRGF 854
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
KGE+ GD R+ +G I D+++EITEL + WT D+KD L+ ++
Sbjct: 855 KGEVTGSGD-RYKFSGIIKQTADNEVEITELPIRTWTQDFKDKLEEII 901
>gi|38453803|dbj|BAD02202.1| DNA topoisomerase II [Arthroderma gypseum]
Length = 1086
Score = 563 bits (1450), Expect = e-157, Method: Compositional matrix adjust.
Identities = 308/649 (47%), Positives = 384/649 (59%), Gaps = 119/649 (18%)
Query: 38 KKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACD 97
K +QLEHIL RPDTYIGSVE + MW+ N T ME RE+++VPGLYKIFDEILVNA D
Sbjct: 1 KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60
Query: 98 NKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDE 157
NKQ DP M+ I++T+++E ISVWNNG+GIPV HK E +++P +IFGHLLTSSNYN
Sbjct: 61 NKQNDPSMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEHIYIPELIFGHLLTSSNYN-- 118
Query: 158 EDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKS 217
D ++KVTGGRNGYGAKLCNIFS++F VET+ S KK
Sbjct: 119 -----------------------DMQEKVTGGRNGYGAKLCNIFSNEFTVETADSSNKKK 155
Query: 218 FKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAS 277
FK W NMS + +I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 156 FKLTWTKNMSTMGKAKITESKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAG- 214
Query: 278 TKDVKVFLNGEKLPVKNFQDYVKLYTDR------QDEDGDPVKIIYENVNPRWEVAIAPS 331
T V LNG ++PVK+F+ Y+++YT +D D II E+ + RWE+ S
Sbjct: 215 TCGTTVKLNGTRIPVKSFKKYMEMYTKAIKTERGEDPTSDKNDIITESPDRRWEIGFTVS 274
Query: 332 DRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVK 391
D FQQVSFVNSIATT GG HV+ + D I ++ + +KKKNK
Sbjct: 275 DGSFQQVSFVNSIATTSGGTHVNYISDQICNKLADALKKKNKT----------------- 317
Query: 392 NNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFG 451
G LK Q+KNHI++F+N IVNP F SQTKE +T + FG
Sbjct: 318 ------------------GATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTRSSQFG 359
Query: 452 STCV-------------------------------------------PKLEDANDAGTKN 468
S C+ PKL DAN AGTK
Sbjct: 360 SKCIVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAGTKE 419
Query: 469 SIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLV 528
CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI N+
Sbjct: 420 GHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQNIK 479
Query: 529 KILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FL 587
+GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +PTLL++P FL
Sbjct: 480 NFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKIPGFL 536
Query: 588 EEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
EFITPI+K K SF++LPE+EEWKE + ++ KYYK
Sbjct: 537 IEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKEAHAHDKKWQKKYYK 585
Score = 134 bits (337), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 87/113 (76%), Gaps = 2/113 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P++L+NGA+GIGTGW T IPN+NP ++VDN+KR++ G++ +PMKPW++ F
Sbjct: 795 IEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDNLKRLMAGDELVPMKPWFRGF 854
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KGE+ GD R+ +G I D+++EI+EL + WT D+KD L+ ++ AEK
Sbjct: 855 KGEVTGSGD-RYKFSGIIKQTGDNEVEISELPIRTWTQDFKDKLEEIIK-AEK 905
>gi|323455286|gb|EGB11155.1| hypothetical protein AURANDRAFT_22331, partial [Aureococcus
anophagefferens]
Length = 1228
Score = 563 bits (1450), Expect = e-157, Method: Compositional matrix adjust.
Identities = 318/690 (46%), Positives = 403/690 (58%), Gaps = 136/690 (19%)
Query: 10 PDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTY----------IGSVEPI 59
P Q +PKK ++E+ YQKK+QLEHILLRPDTY +GS+E
Sbjct: 4 PAPQMETTNAAPKKAPGKKSKTIEETYQKKTQLEHILLRPDTYSAPAAPETARLGSIEMS 63
Query: 60 TETMWLMNRETNHMERREITY----VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQE 115
T+ MW++N +T + RR +TY VPGL+KIFDEI+VNA DNKQRDP M IK+ ++
Sbjct: 64 TQPMWVLNPDTKRIVRRNVTYARRGVPGLFKIFDEIMVNAADNKQRDPSMTTIKVDIDVA 123
Query: 116 TNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLT 175
N+ISV N+GKGIPV H + +VP +IFGHLLT SN
Sbjct: 124 ANSISVGNDGKGIPVEMHGEHGCYVPELIFGHLLTGSN---------------------- 161
Query: 176 SSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIK 235
++D E K TGGRNGYGAKL NIFS KF VET+ S+ + Q W+ NMS P
Sbjct: 162 ---FDDNEKKTTGGRNGYGAKLANIFSKKFTVETADSKSGRKLSQTWEHNMSGTQGPAKI 218
Query: 236 SGSKD--DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAST----KDVKVFLNGEK 289
S K+ DFT++TF PDL +FKM LD D+V L+++RAYD AAS +KV LNGE+
Sbjct: 219 SPHKNKKDFTRVTFEPDLARFKMDRLDDDIVALLSKRAYDVAASASCHGSSLKVELNGER 278
Query: 290 LPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKG 349
+PVK+F YV L+ DG E V+ RW V +APSD FQ +SFVNSI T+KG
Sbjct: 279 VPVKSFAQYVALH------DGLEPPAALERVDDRWTVGVAPSDGTFQHLSFVNSICTSKG 332
Query: 350 GRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLG 409
G HV+ V D I ++ VKKKNK
Sbjct: 333 GSHVNYVADQITAKLAAAVKKKNK------------------------------------ 356
Query: 410 GMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTCV-------------- 455
G +KP +K H+ ++++ +IVNP FDSQTKE +T ++ +FGS CV
Sbjct: 357 GQEVKPAFIKAHLCVYVDAMIVNPAFDSQTKETLTTKEKAFGSKCVLPDKFLKAIEKSGV 416
Query: 456 ------------------------------PKLEDANDAGTKNSIDCTLILTEGDSAKSL 485
KL+DAN AG DCTLILTEGDSAK+L
Sbjct: 417 VDRVLAWTKFKQDEQLKRKGGSKKTRLTGITKLDDANAAGGARGKDCTLILTEGDSAKAL 476
Query: 486 AVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDM 545
AVSGLGVVGRD YGVFPL+GK LNVREA+H I++N E+ N+VKILGL++ Y ++
Sbjct: 477 AVSGLGVVGRDLYGVFPLKGKPLNVREASHAAIMKNEEVQNVVKILGLRFGVTYDEA-NL 535
Query: 546 KTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKAT---KAR 601
KTLRYG LMIMTDQD DGSHIKGL+IN +HH WP+LL++P FL FITPI+KAT K++
Sbjct: 536 KTLRYGHLMIMTDQDHDGSHIKGLLINCLHHFWPSLLQIPGFLRCFITPIVKATPAAKSK 595
Query: 602 EELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
F++LPE+E WKE H + IKYYK
Sbjct: 596 PAEVFFTLPEYEAWKEARGGLHGHAIKYYK 625
Score = 92.4 bits (228), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGE-DPLPMKPWYKN 718
IEP +Y+P++P L NGA+GIGTGW T +PN+ PR ++ ++RMI + + P Y+
Sbjct: 837 IEPTYYVPVLPFALCNGADGIGTGWATSVPNYAPRALIGVLRRMIDADVGAADLAPHYRG 896
Query: 719 FKGEIDYCGD---SRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F G+I G F V G LDD + + EL WT DYK L+ L G +K
Sbjct: 897 FGGDIVAKGGKNAGAFAVLGRATRLDDVTVLVDEL---PWTHDYKQWLEVQLSGDDK 950
Score = 49.3 bits (116), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 30/52 (57%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
K YDYLL M WSLTMER + L + D+ EL L K T +W DDL L
Sbjct: 1132 KGYDYLLSMKIWSLTMERVDALRAELKDEDAELVALVAKPETAIWLDDLADL 1183
>gi|118398165|ref|XP_001031412.1| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
thermophila]
gi|89285740|gb|EAR83749.1| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
thermophila SB210]
Length = 1416
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 300/656 (45%), Positives = 405/656 (61%), Gaps = 123/656 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
SVE+ YQKKSQ+EHILLRPD+Y+GS+E +++W++N+E +E +EI +VP YKIFDE
Sbjct: 7 SVEERYQKKSQIEHILLRPDSYVGSIENEQKSLWILNKEGTALEEKEIDFVPAFYKIFDE 66
Query: 91 ILVNACDNKQRDPK---MNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGH 147
I+VNA DN QR+ M+ IK+ ++Q+ ISVWNNG+GIP+ HK+ +++P MIF
Sbjct: 67 IIVNAADNFQRNQDGAPMDTIKVMIDQQNQMISVWNNGQGIPIQIHKEHNIYIPEMIF-- 124
Query: 148 LLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVV 207
GHLLTSSNY+D+E+KV GGRNG+GAKL NIFS KF+V
Sbjct: 125 -----------------------GHLLTSSNYDDKEEKVVGGRNGFGAKLTNIFSKKFIV 161
Query: 208 ETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDL 266
E + + KK +KQ W+ NMS+ T P I K +FT +TF PDL+KFKM ++ DM +L
Sbjct: 162 ECNDDKRKKYYKQEWRKNMSERTEPLITENKKGGNFTCVTFYPDLSKFKMQNISDDMANL 221
Query: 267 ITRRAYDAAASTKD-VKVFLNGEKLPVKNFQDYVKLYT---DRQDEDGDPVKIIYENVNP 322
+ +R YD A + VKV+LN E++ +K+F YV L+ + Q + DP +
Sbjct: 222 LRKRVYDMAGIFNNKVKVYLNNEQIKIKSFSQYVNLFIPDIEEQYKCYDPTM-----TSD 276
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RWE+ + SD F+QVSFVN I T++GG+HVD V+D IV+++ E + KKNKDL
Sbjct: 277 RWEILVTFSDGQFKQVSFVNGICTSRGGKHVDFVIDKIVERMQEQILKKNKDLD------ 330
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
+KP Q+K +++IF+NCLIVNP+FDSQTK+
Sbjct: 331 ------------------------------IKPHQIKQNLFIFMNCLIVNPSFDSQTKDT 360
Query: 443 MTLQKGSFGS---------------------------------------------TCVPK 457
+T + +FGS T +PK
Sbjct: 361 LTTKASAFGSKPELSEKFIKKILGTGIIEQIVSQAKARQNAKLAKTLKGGKKGRITGIPK 420
Query: 458 LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQ 517
L+DANDAGT S +CTLILTEGDSAK+LA++G+ VVGRD YGVFPL+GKLLNVREA KQ
Sbjct: 421 LDDANDAGTARSENCTLILTEGDSAKALAMAGIEVVGRDNYGVFPLKGKLLNVREANKKQ 480
Query: 518 ILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHN 577
I+EN EI N+ KI+GL + E+ K LRYG LMIM DQD DGSHIKGL+INFIHH
Sbjct: 481 IIENQEIQNICKIIGLDPA--VQNYENTKQLRYGSLMIMADQDSDGSHIKGLVINFIHHF 538
Query: 578 WPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN-WHTYKIKYYK 631
WP+L ++ FL+EFITPI+K TK E SF+++ +F+ + + + YK+KYYK
Sbjct: 539 WPSLFKMKGFLKEFITPILKVTKGDEVHSFFTIQDFKNFAAQKGDRLKQYKVKYYK 594
Score = 123 bits (308), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 78/109 (71%), Gaps = 1/109 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PIIPM LVNG+ GIGTGW T IPN+N +EIV+ I+ + G+ + PWYK F
Sbjct: 804 VEPEWYMPIIPMCLVNGSSGIGTGWSTDIPNYNHKEIVEQIRGKLEGKPFTELHPWYKGF 863
Query: 720 KGEIDYCGDSRFVVNGEIAILD-DDKLEITELQVGKWTTDYKDTLDTLL 767
+G+I+ ++V G+ I + ++ ++ITEL VGKWT DYK+ L+ LL
Sbjct: 864 QGQIEINPKGGYIVKGQYEIDEVEETIKITELPVGKWTRDYKNYLEELL 912
Score = 48.9 bits (115), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 846 EDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
E P +Y+YLL M +SLT E+ +L K+ ++K +EL IL+KK D+W++DLD
Sbjct: 1099 EIPLSEYNYLLSMPIFSLTEEKVLQLKKQVEEKESELLILQKKEIKDMWTEDLDKF 1154
>gi|38453801|dbj|BAD02201.1| DNA topoisomerase II [Arthroderma incurvatum]
Length = 1086
Score = 561 bits (1447), Expect = e-156, Method: Compositional matrix adjust.
Identities = 307/649 (47%), Positives = 385/649 (59%), Gaps = 119/649 (18%)
Query: 38 KKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACD 97
K +QLEHIL RPDTYIGSVE + MW+ N T ME RE+++VPGLYKIFDEILVNA D
Sbjct: 1 KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60
Query: 98 NKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDE 157
NKQ DP M+ I++T+++E ISVWNNG+GIPV HK E +++P +IFGHLLTSSNYN
Sbjct: 61 NKQNDPSMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEHIYIPELIFGHLLTSSNYN-- 118
Query: 158 EDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKS 217
D ++KVTGGRNGYGAKLCNIFS++F VET+ S KK
Sbjct: 119 -----------------------DLQEKVTGGRNGYGAKLCNIFSNEFTVETADSSNKKK 155
Query: 218 FKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAS 277
F+ W +NMS + +I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 156 FRLTWTNNMSTMGKAKITECKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAG- 214
Query: 278 TKDVKVFLNGEKLPVKNFQDYVKLYTDR------QDEDGDPVKIIYENVNPRWEVAIAPS 331
T V LNG ++PVK+F+ Y+++YT +D D II E+ + RWE+ S
Sbjct: 215 TCGTTVKLNGTRIPVKSFKKYMEMYTKAIKTERGEDPTSDKNDIITESPDRRWEIGFTVS 274
Query: 332 DRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVK 391
D FQQVSFVNSIATT GG HV+ + D I ++ + +KKKNK
Sbjct: 275 DGSFQQVSFVNSIATTSGGTHVNYISDQICNKLADALKKKNKT----------------- 317
Query: 392 NNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFG 451
G LK Q+KNHI++F+N IVNP F SQTKE +T + FG
Sbjct: 318 ------------------GATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTRSSQFG 359
Query: 452 STCV-------------------------------------------PKLEDANDAGTKN 468
S C+ PKL DAN AGTK
Sbjct: 360 SKCIVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAGTKE 419
Query: 469 SIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLV 528
CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI N+
Sbjct: 420 GHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQNIK 479
Query: 529 KILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FL 587
+GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +PTLL++P FL
Sbjct: 480 NFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKIPGFL 536
Query: 588 EEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
EFITPI+K K SF++LPE+EEWKE + ++ KYYK
Sbjct: 537 IEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKESHAHDKKWQKKYYK 585
Score = 134 bits (336), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 87/113 (76%), Gaps = 2/113 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P++L+NGA+GIGTGW T IPN+NP ++VDN+KR++ G++ +PMKPW++ F
Sbjct: 795 IEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDNLKRLMVGDELVPMKPWFRGF 854
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KGE+ GD R+ +G I D+++EI+EL + WT D+KD L+ ++ AEK
Sbjct: 855 KGEVTGSGD-RYKFSGIIKQTGDNEVEISELPIRTWTQDFKDKLEDIIK-AEK 905
>gi|18369816|dbj|BAB84103.1| DNA topoisomerase II [Penicillium chrysogenum]
Length = 1423
Score = 561 bits (1447), Expect = e-156, Method: Compositional matrix adjust.
Identities = 300/651 (46%), Positives = 388/651 (59%), Gaps = 119/651 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHI+ RPDTYIGS E T+ MW+ N T ME R++++VPGLYKIFDEI+VNA
Sbjct: 10 YQKLTQLEHIIKRPDTYIGSTERTTQQMWVYNSGTELMEFRDVSFVPGLYKIFDEIVVNA 69
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK D MN I+IT+++E ISVWNNG+GIP+ H EK++VP +IF
Sbjct: 70 ADNKHNDSSMNEIRITIDREAGEISVWNNGRGIPIEIHSKEKIYVPELIF---------- 119
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLLTSSNY+D + KVTGGRNG+GAKLCN+FS++F +ET S K
Sbjct: 120 ---------------GHLLTSSNYDDSQQKVTGGRNGFGAKLCNVFSTEFTLETQDSRQK 164
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K +KQ W +NM+K+ +I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 165 KKYKQTWTENMTKMGKAKITDAKGDDYTKVTFKPDFAKFGMEGIDDDFESLVKRRVYDLA 224
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTD----RQDEDGDPVK--IIYENVNPRWEVAIA 329
T V V LN ++P+++F+ Y+++YT + +DG P K II + +PRWE+ A
Sbjct: 225 G-TAGVAVKLNNTRVPIRSFRKYMEMYTKAIRKERGDDGPPTKDEIITCSPDPRWEIGFA 283
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ + D I ++ + VKKKNK
Sbjct: 284 VSDGSFQQVSFVNSIATTSGGTHVNYIADQICTRLADQVKKKNK---------------- 327
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LK Q++NHI+IF+ LIVNP F SQTKE +T +
Sbjct: 328 -------------------SGATLKSAQIRNHIFIFVKALIVNPAFTSQTKEQLTTKASQ 368
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS C PKL DAN AGT
Sbjct: 369 FGSKCPLDEDFYKKVLKTEVMSNILHFAEQKADPDLKKGDTGRRTRMNNPKLVDANKAGT 428
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
+ CTLILTEG+SAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +N EI +
Sbjct: 429 REGRHCTLILTEGESAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASFDQISKNVEIQS 488
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ +GLQ+ K+YT D K LRYG LMIMTDQD DGSHIKGL+INF+ +P+LL++P
Sbjct: 489 IKNFIGLQHKKEYT---DTKGLRYGHLMIMTDQDHDGSHIKGLLINFLQAQFPSLLKIPE 545
Query: 586 FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPIIK K ++ SF+++PE +EW+E + ++ KYYK
Sbjct: 546 FLIEFITPIIKVWKGDPKNPTKQKSFFTMPEHDEWREAHQHERGWEHKYYK 596
Score = 129 bits (325), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 83/114 (72%), Gaps = 1/114 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE ++P++PM+L+NGA+GIGTGW + IPN+NP E+V+N+KR++ GE PM+PW++
Sbjct: 805 KIEPEVFMPVVPMILINGADGIGTGWSSSIPNYNPEEVVNNLKRLMAGEPTEPMQPWFRG 864
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F GE+ G RF +G I + ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 865 FTGEVVAVGGDRFKFSGIIRECGEKEVEITELPIRTWTQDFKDKLEEIIK-AEK 917
>gi|46370594|gb|AAS90119.1| DNA topoisomerase type 2 [Tetrahymena thermophila]
Length = 1402
Score = 561 bits (1447), Expect = e-156, Method: Compositional matrix adjust.
Identities = 300/656 (45%), Positives = 405/656 (61%), Gaps = 123/656 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
SVE+ YQKKSQ+EHILLRPD+Y+GS+E +++W++N+E +E +EI +VP YKIFDE
Sbjct: 7 SVEERYQKKSQIEHILLRPDSYVGSIENEQKSLWILNKEGTALEEKEIDFVPAFYKIFDE 66
Query: 91 ILVNACDNKQRDPK---MNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGH 147
I+VNA DN QR+ M+ IK+ ++Q+ ISVWNNG+GIP+ HK+ +++P MIF
Sbjct: 67 IIVNAADNFQRNQDGAPMDTIKVMIDQQNQMISVWNNGQGIPIQIHKEHNIYIPEMIF-- 124
Query: 148 LLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVV 207
GHLLTSSNY+D+E+KV GGRNG+GAKL NIFS KF+V
Sbjct: 125 -----------------------GHLLTSSNYDDKEEKVVGGRNGFGAKLTNIFSKKFIV 161
Query: 208 ETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDL 266
E + + KK +KQ W+ NMS+ T P I K +FT +TF PDL+KFKM ++ DM +L
Sbjct: 162 ECNDDKRKKYYKQEWRKNMSERTEPLITENKKGGNFTCVTFYPDLSKFKMQNISDDMANL 221
Query: 267 ITRRAYDAAASTKD-VKVFLNGEKLPVKNFQDYVKLYT---DRQDEDGDPVKIIYENVNP 322
+ +R YD A + VKV+LN E++ +K+F YV L+ + Q + DP +
Sbjct: 222 LRKRVYDMAGIFNNKVKVYLNNEQIKIKSFSQYVNLFIPDIEEQYKCYDPTM-----TSD 276
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RWE+ + SD F+QVSFVN I T++GG+HVD V+D IV+++ E + KKNKDL
Sbjct: 277 RWEILVTFSDGQFKQVSFVNGICTSRGGKHVDFVIDKIVERMQEQILKKNKDLD------ 330
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
+KP Q+K +++IF+NCLIVNP+FDSQTK+
Sbjct: 331 ------------------------------IKPHQIKQNLFIFMNCLIVNPSFDSQTKDT 360
Query: 443 MTLQKGSFGS---------------------------------------------TCVPK 457
+T + +FGS T +PK
Sbjct: 361 LTTKASAFGSKPELSEKFIKKILGTGIIEQIVSQAKARQNAKLAKTLKGGKKGRITGIPK 420
Query: 458 LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQ 517
L+DANDAGT S +CTLILTEGDSAK+LA++G+ VVGRD YGVFPL+GKLLNVREA KQ
Sbjct: 421 LDDANDAGTARSENCTLILTEGDSAKALAMAGIEVVGRDNYGVFPLKGKLLNVREANKKQ 480
Query: 518 ILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHN 577
I+EN EI N+ KI+GL + E+ K LRYG LMIM DQD DGSHIKGL+INFIHH
Sbjct: 481 IIENQEIQNICKIIGLDPA--VQNYENTKQLRYGSLMIMADQDSDGSHIKGLVINFIHHF 538
Query: 578 WPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN-WHTYKIKYYK 631
WP+L ++ FL+EFITPI+K TK E SF+++ +F+ + + + YK+KYYK
Sbjct: 539 WPSLFKMKGFLKEFITPILKVTKGDEVHSFFTIQDFKNFAAQKGDRLKQYKVKYYK 594
Score = 115 bits (287), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 72/105 (68%), Gaps = 1/105 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PIIPM LVNG+ GIGTGW T IPN+N + IV+ I+ + G + PWYK F
Sbjct: 804 VEPEWYMPIIPMCLVNGSSGIGTGWSTDIPNYNHKGIVEQIRGKLEGRPFTELHPWYKGF 863
Query: 720 KGEIDYCGDSRFVVNGEIAILD-DDKLEITELQVGKWTTDYKDTL 763
+G+I+ ++V G+ I + ++ ++ITEL VGKWT DYK L
Sbjct: 864 QGQIEINPKGGYIVKGQYEIDEVEETIKITELPVGKWTRDYKVVL 908
Score = 48.9 bits (115), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 846 EDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
E P +Y+YLL M +SLT E+ +L K+ ++K +EL IL+KK D+W++DLD
Sbjct: 1085 EIPLSEYNYLLSMPIFSLTEEKVLQLKKQVEEKESELLILQKKEIKDMWTEDLDKF 1140
>gi|345563425|gb|EGX46426.1| hypothetical protein AOL_s00109g184 [Arthrobotrys oligospora ATCC
24927]
Length = 1586
Score = 561 bits (1447), Expect = e-156, Method: Compositional matrix adjust.
Identities = 303/659 (45%), Positives = 398/659 (60%), Gaps = 128/659 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQ EH+L+RPDTYIGS+E MW+ N++ + M E+++VPGLYKIFDEI+VNA
Sbjct: 136 YQKLSQEEHVLIRPDTYIGSIERTESKMWIHNQDEDRMVYSEVSFVPGLYKIFDEIIVNA 195
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP MN +K+ +++E TISV+NNG GIP+ H K+++P MI
Sbjct: 196 ADNKIRDPSMNMLKVELDREKGTISVYNNGSGIPIQIHDKTKIYIPEMI----------- 244
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
FGHLLT SNYND E KV GGRNG+GAKLCNIFS++F++ET+ + K
Sbjct: 245 --------------FGHLLTGSNYNDNEKKVVGGRNGFGAKLCNIFSTEFILETADKKSK 290
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
+ +KQVW++NM IK +K +++TK+TF PDL KF MT +D L+ RR YD
Sbjct: 291 QKYKQVWRNNMKVCEKAIIKPMAKAEEYTKVTFKPDLEKFGMTEIDSHFESLVRRRVYDL 350
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTD-----RQDE------DGDPVKIIYENVNPR 323
A +D+KV+ NG+++ +K+F+ +++L+ D +Q+ D P I YE VN R
Sbjct: 351 AGCCRDLKVYYNGDQIKIKDFKTFMQLHVDSILREKQESGAILELDSKPPVIAYERVNDR 410
Query: 324 WEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLF 383
WE+ A SD FQQVS+VNSIATT GG HV+ V D IV ++
Sbjct: 411 WEIGFAVSDGTFQQVSYVNSIATTSGGTHVNYVADRIVNRL------------------- 451
Query: 384 GNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENM 443
N +++ K L ALKP Q+KNH ++FINCLI NP F SQTKE +
Sbjct: 452 --------NAEMKKQKAL---------AALKPAQIKNHFFLFINCLIENPAFTSQTKEQL 494
Query: 444 TLQKGSFGSTCV-------------------------------------------PKLED 460
T + +FGS C KL D
Sbjct: 495 TTRPNAFGSACEISDAFLTKVVRSGIKEALSDTAQTKTDALLKKTDGSRRARIVNSKLVD 554
Query: 461 ANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILE 520
AN AGTK+ CTLILTEGDSAK+LA+SG+ VVGRD +GVFPLRGK+LNVR+A QI +
Sbjct: 555 ANKAGTKDGWQCTLILTEGDSAKALAMSGMEVVGRDLFGVFPLRGKMLNVRDAPADQIAK 614
Query: 521 NAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPT 580
NAEI N+ +ILGLQ+ K Y +++K LRYG LMIMTDQD DGSHIKGL+INF+ + +
Sbjct: 615 NAEIQNIKQILGLQHKKTYDE-KNIKDLRYGHLMIMTDQDHDGSHIKGLLINFLDAQFAS 673
Query: 581 LLRLP-FLEEFITPIIKA-----TKAREELSFYSLPEFEEWKEETT--NWHTYKIKYYK 631
LL++ FL EFITPI+KA TK + +F+++PE+EEWKE T W T KYYK
Sbjct: 674 LLKIDGFLLEFITPIVKAYKGVVTKPTKSRAFFTMPEYEEWKETNTEKGWQT---KYYK 729
Score = 121 bits (303), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 78/109 (71%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP WY P++P++L+NG++GIGTGW + IPN+NP ++ NI+R++ +D PM+PWY+
Sbjct: 938 KIEPNWYAPVLPLILMNGSDGIGTGWSSSIPNYNPEDVAMNIRRLLDDQDLEPMQPWYRG 997
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
FKG ++ ++ +G I ++D +EITEL V WT ++K+ LD ++
Sbjct: 998 FKGRLERLTPEKYQFSGIINQVNDTTVEITELPVRLWTQEFKEKLDDII 1046
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 846 EDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
+D ++YLLGM WSLT E+ +LL + K E++ L K++P DLW +DLD E
Sbjct: 1226 DDVGDGFNYLLGMPIWSLTKEKVEKLLAECGTKEGEIDTLAKRSPKDLWREDLDVFME 1283
>gi|22830795|dbj|BAC15613.1| DNA topoisomerase II [Aspergillus ochraceus]
Length = 1101
Score = 561 bits (1445), Expect = e-156, Method: Compositional matrix adjust.
Identities = 301/654 (46%), Positives = 391/654 (59%), Gaps = 119/654 (18%)
Query: 33 EKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEIL 92
++ YQK +QLEHI+ RPDTYIGS E T+ MW+ N T ME R++++VPGLYKIFDEI+
Sbjct: 1 QRKYQKLTQLEHIIKRPDTYIGSTERTTQQMWVYNSGTESMEYRDVSFVPGLYKIFDEIV 60
Query: 93 VNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSS 152
VNA DNK D KMN ++IT+++E ISVWNNG+GIP+ H EK++VP +IF
Sbjct: 61 VNAADNKHNDAKMNEMRITIDREAGEISVWNNGRGIPIEIHSKEKIYVPELIF------- 113
Query: 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCS 212
GHLLTSSNY+D + KVTGGRNG+GAKLCN+FS++F +ET S
Sbjct: 114 ------------------GHLLTSSNYDDSQQKVTGGRNGFGAKLCNVFSTEFTLETQDS 155
Query: 213 EYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAY 272
KK +KQ W +NM+K+ +I DD+TK+TF PD KF M +D D L+ RR Y
Sbjct: 156 HQKKKYKQTWTENMTKMGKAKITDAKGDDYTKVTFKPDFAKFGMDGIDDDFESLVKRRVY 215
Query: 273 DAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD----RQDEDGDPVK--IIYENVNPRWEV 326
D A T +V V LNG ++ V+NF+ Y+++YT + +DG P K II + +PRWE+
Sbjct: 216 DLAG-TANVAVKLNGTRVAVRNFRKYMEMYTKAIRKERGDDGPPSKDEIITCSPDPRWEI 274
Query: 327 AIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNK 386
A SD FQQVSFVNSIATT GG HV+ + D I ++ + VKKKNK
Sbjct: 275 GFAVSDGSFQQVSFVNSIATTSGGTHVNYIADQICTRLADQVKKKNK------------- 321
Query: 387 FNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ 446
G LK Q++NHI+IF+ LIVNP F SQTKE +T +
Sbjct: 322 ----------------------SGATLKSAQIRNHIFIFVKALIVNPAFTSQTKEQLTTK 359
Query: 447 KGSFGSTCV-------------------------------------------PKLEDAND 463
FGS C PKL DAN
Sbjct: 360 ASQFGSKCPLDEDFYKKVLKTEVMSNILHFAEQKADQILKKGDTGRRTRMNNPKLVDANK 419
Query: 464 AGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAE 523
AGT+ CTLILTEG+SAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +N E
Sbjct: 420 AGTREGHHCTLILTEGESAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASFDQISKNVE 479
Query: 524 INNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR 583
I ++ +GLQ+ K+YT + K LRYG LMIMTDQD DGSHIKGL+INF+ +P+LL+
Sbjct: 480 IQSIKNFIGLQHKKEYT---ETKGLRYGHLMIMTDQDHDGSHIKGLLINFLQAQFPSLLK 536
Query: 584 LP-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+P FL EFITPIIK K ++ SF+++PE +EW+E + + KYYK
Sbjct: 537 IPEFLIEFITPIIKVWKGDPKNPTKQKSFFTMPEHDEWREAHKHERGWDHKYYK 590
Score = 127 bits (319), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 83/114 (72%), Gaps = 1/114 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE ++P++PM+L+NGA+GIGTGW + IPN+NP ++V+N+KR++ G+ PM+PW++
Sbjct: 799 KIEPEVFMPVVPMILINGADGIGTGWSSSIPNYNPEDVVNNLKRLMAGQPTEPMQPWFRG 858
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F GE+ G R+ +G I D ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 859 FTGEVVAVGGDRYKFSGIIRECGDKEVEITELPIRTWTQDFKDKLEEIIK-AEK 911
>gi|296418623|ref|XP_002838930.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634913|emb|CAZ83121.1| unnamed protein product [Tuber melanosporum]
Length = 1612
Score = 561 bits (1445), Expect = e-156, Method: Compositional matrix adjust.
Identities = 307/658 (46%), Positives = 388/658 (58%), Gaps = 136/658 (20%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
K S YQK +QLEHIL RPDTY+GSVE MW+ + T M + +T VPGLYKIF
Sbjct: 47 KKSFADAYQKLTQLEHILKRPDTYVGSVERSERHMWVFDSGTTSMVWKPVTMVPGLYKIF 106
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNK RDPKM+ +K+TV++ TNTISV+NNG+GIP+ H EK++VP +IFGHL
Sbjct: 107 DEILVNAADNKIRDPKMDTLKVTVDKATNTISVYNNGRGIPIEIHSKEKVYVPELIFGHL 166
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
LTSSNY+D +E KVTGGRNGYGAKLCNIFS++F VE
Sbjct: 167 LTSSNYDD-------------------------DEKKVTGGRNGYGAKLCNIFSTEFTVE 201
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDLI 267
T K+ +KQ W DNM K+ +I + K + FTKITF PDL KF M +D D L+
Sbjct: 202 TGDKNTKQKYKQTWTDNMGKMGKAKITANPKGEQFTKITFKPDLAKFHMEEMDDDFEALV 261
Query: 268 TRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDG---DPVKIIYENVNPRW 324
RR YD AAS KDVKVFLNGE++ + NF+ Y ++Y + E+ + + I +E VN RW
Sbjct: 262 KRRVYDMAASVKDVKVFLNGERIKL-NFRKYCEMYVNALHEEAGCEEKLVITWEVVNDRW 320
Query: 325 EVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFG 384
EVA A S FQQVSFVNSIATT GG HV+ + D + + +KK+NK
Sbjct: 321 EVAFAASGGNFQQVSFVNSIATTSGGTHVNYIADQLCTHLQGALKKQNK----------- 369
Query: 385 NKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT 444
G A+K Q++NH +IF+NCLI NP F SQTKE +T
Sbjct: 370 ------------------------SGAAVKNAQMRNHFFIFVNCLIENPAFTSQTKEQLT 405
Query: 445 LQKGSFGSTCV--------------------------------------------PKLED 460
+ G+FGS C PKL D
Sbjct: 406 TRAGAFGSKCALSDTFIKNILKNTPVISNIIDYANMKADKQLKKTDGSRRSRINNPKLID 465
Query: 461 ANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVV-GRDKYGVFPLRGKLLNVREATHKQIL 519
AN AGTK+S +C LILTEGDSA+SLAV+G+ + GRD++GVFPLRGKLLNVR+A+H QI+
Sbjct: 466 ANRAGTKDSQECVLILTEGDSARSLAVAGISAIDGRDRFGVFPLRGKLLNVRDASHDQIM 525
Query: 520 ENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWP 579
+NAEI N+ +ILGLQ+ K Y E K LRYG LMIMTDQD DGSHIKGL+INF +P
Sbjct: 526 KNAEIQNIKQILGLQHKKVY---ESRKELRYGHLMIMTDQDYDGSHIKGLLINFFETQFP 582
Query: 580 TLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYKVVYVTG 637
+L L+F+++PE+E WKE ++ KYYK + +G
Sbjct: 583 SL----------------------LNFFTMPEYEYWKENNAE-KGWEHKYYKGLGTSG 617
Score = 123 bits (308), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 84/129 (65%), Gaps = 3/129 (2%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP WY P++P+VL+NGA+GIGTGW T IPN+NP ++V NI+R++ E+ PM PWY++
Sbjct: 820 KIEPMWYAPVVPLVLINGADGIGTGWSTTIPNYNPEDVVANIRRLMNNEELEPMTPWYRD 879
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAE---KDEV 775
+ G+++ +F +G I +D E+ EL + WT ++K+ L+ ++ G + KD V
Sbjct: 880 WAGKVEQVAVDKFKFSGVINQIDGVTCEVRELPIKMWTQEFKEKLEEIIKGEKSFVKDYV 939
Query: 776 HPGPGRKSH 784
R+ H
Sbjct: 940 DYNSPRRVH 948
Score = 58.5 bits (140), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCP 911
Y+YLLGM WSLT E+ +LL+ DK E++ L KK+P DLW+ +LDA E+ +I
Sbjct: 1094 YNYLLGMAIWSLTHEKVQKLLQDVADKELEVDELIKKSPKDLWNTELDAFIEEWRIQ-LE 1152
Query: 912 GGNRTRGLALKRQ 924
+ +G +KR+
Sbjct: 1153 EDKKEQGTVVKRK 1165
>gi|38453819|dbj|BAD02210.1| DNA topoisomerase II [Trichophyton verrucosum]
Length = 1089
Score = 561 bits (1445), Expect = e-156, Method: Compositional matrix adjust.
Identities = 307/651 (47%), Positives = 388/651 (59%), Gaps = 121/651 (18%)
Query: 38 KKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACD 97
K +QLEHIL RPDTYIGSVE + MW+ N T ME RE+++VPGLYKIFDEILVNA D
Sbjct: 1 KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60
Query: 98 NKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDE 157
NKQ DP M+ I++T+++E ISVWNNG+GIPV HK E+ ++P +IFGHLLTSSNYN
Sbjct: 61 NKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQTYIPELIFGHLLTSSNYN-- 118
Query: 158 EDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKS 217
D ++KVTGGRNGYGAKLCNIFS++F VET+ S+ KK
Sbjct: 119 -----------------------DMQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKK 155
Query: 218 FKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAS 277
FK W +NMS + +I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 156 FKLTWTNNMSTMGKAKITECKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAG- 214
Query: 278 TKDVKVFLNGEKLPVKNFQDYVKLYTD--RQDEDGDPVK------IIYENVNPRWEVAIA 329
T V LNG ++P+K+F+ Y+++YT + + DP II E+ + RWE+
Sbjct: 215 TCGTAVKLNGTRIPIKSFKKYMEMYTKAIKAERGEDPTSASDKNDIITESPDRRWEIGFT 274
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ + D I ++ + +KKKNK
Sbjct: 275 VSDGSFQQVSFVNSIATTSGGTHVNYISDQICNKLADALKKKNKT--------------- 319
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LK Q+KNHI++F+N IVNP F SQTKE +T +
Sbjct: 320 --------------------GATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTRPSQ 359
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS CV PKL DAN AGT
Sbjct: 360 FGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAGT 419
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI N
Sbjct: 420 KDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQN 479
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ +GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +PTLL++P
Sbjct: 480 IKNFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKIPG 536
Query: 586 FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K SF+++PE+EEWKE + ++ KYYK
Sbjct: 537 FLIEFITPIVKVWKGDPKNPTHSKSFFTIPEYEEWKEAHAHDKKWQKKYYK 587
Score = 137 bits (346), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 87/113 (76%), Gaps = 2/113 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P++L+NGA+GIGTGW T IPN+NP E+VDN+KR++ GE+ +PMKPW++ F
Sbjct: 797 IEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMVGEELVPMKPWFRGF 856
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KGE+ GD R+ +G I D+++EITEL + WT D+KD L+ ++ AEK
Sbjct: 857 KGEVSGSGD-RYKFSGIIKQTADNEVEITELPIRTWTQDFKDKLEEIIK-AEK 907
>gi|38453825|dbj|BAD02213.1| DNA topoisomerase II [Arthroderma benhamiae]
Length = 1089
Score = 560 bits (1444), Expect = e-156, Method: Compositional matrix adjust.
Identities = 306/651 (47%), Positives = 389/651 (59%), Gaps = 121/651 (18%)
Query: 38 KKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACD 97
K +QLEHIL RPDTYIGSVE + MW+ N T ME RE+++VPGLYKIFDEILVNA D
Sbjct: 1 KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60
Query: 98 NKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDE 157
NKQ DP M+ I++T++++ ISVWNNG+GIPV HK E++++P +IFGHLLTSSNYN
Sbjct: 61 NKQNDPNMSEIRVTLDKQAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTSSNYN-- 118
Query: 158 EDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKS 217
D ++KVTGGRNGYGAKLCNIFS++F VET+ S+ KK
Sbjct: 119 -----------------------DMQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKK 155
Query: 218 FKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAS 277
FK W +NMS + +I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 156 FKLTWTNNMSTMGKAKITECKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAG- 214
Query: 278 TKDVKVFLNGEKLPVKNFQDYVKLYTD--RQDEDGDPVK------IIYENVNPRWEVAIA 329
T V LNG ++P+K+F+ Y+++YT + + DP II E+ + RWE+
Sbjct: 215 TCGTAVKLNGTRIPIKSFKKYMEMYTKAIKAERGEDPTSASDKNDIITESPDRRWEIGFT 274
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ + D I ++ + +KKKNK
Sbjct: 275 VSDGSFQQVSFVNSIATTSGGTHVNYISDQICNKLADALKKKNKT--------------- 319
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LK Q+KNHI++F+N IVNP F SQTKE +T +
Sbjct: 320 --------------------GATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTRPSQ 359
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS CV PKL DAN AGT
Sbjct: 360 FGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAGT 419
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI N
Sbjct: 420 KDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQN 479
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ +GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +PTLL++P
Sbjct: 480 IKNFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKIPG 536
Query: 586 FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K SF+++PE+EEWKE + ++ KYYK
Sbjct: 537 FLIEFITPIVKVWKGDPKNPTHSKSFFTIPEYEEWKEAHAHDKKWQKKYYK 587
Score = 137 bits (346), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 87/113 (76%), Gaps = 2/113 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P++L+NGA+GIGTGW T IPN+NP E+VDN+KR++ GE+ +PMKPW++ F
Sbjct: 797 IEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMVGEELVPMKPWFRGF 856
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KGE+ GD R+ +G I D+++EITEL + WT D+KD L+ ++ AEK
Sbjct: 857 KGEVTGSGD-RYKFSGIIKQTADNEVEITELPIRTWTQDFKDKLEEIIK-AEK 907
>gi|357457981|ref|XP_003599271.1| DNA topoisomerase [Medicago truncatula]
gi|355488319|gb|AES69522.1| DNA topoisomerase [Medicago truncatula]
Length = 1567
Score = 560 bits (1444), Expect = e-156, Method: Compositional matrix adjust.
Identities = 320/726 (44%), Positives = 414/726 (57%), Gaps = 181/726 (24%)
Query: 19 PSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREI 78
PS P+ ++E++YQKK+QLEHILLRPDTY+GS+E T+ +W+ E M R I
Sbjct: 8 PSTTANIPSK--TIEEMYQKKTQLEHILLRPDTYVGSIEKHTQNLWVY--ENEEMVNRSI 63
Query: 79 TYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKM 138
+YVPGLYKIFDEILVNA DNKQRDP M+ +K+T++ E NT+SV+NNG G+PV H++EK+
Sbjct: 64 SYVPGLYKIFDEILVNAADNKQRDPSMDSLKVTIDPEANTVSVYNNGDGVPVEIHQEEKV 123
Query: 139 FVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLC 198
+VP +IF GHLLTSSNY+D K TGGRNGYGAKL
Sbjct: 124 YVPELIF-------------------------GHLLTSSNYDDNVKKTTGGRNGYGAKLT 158
Query: 199 NIFSSKFVVETS----CSEYKKS---------FKQVWKDNMSKVTSPEI-KSGSKDDFTK 244
NIFS++FV+ET+ +YK++ F +V+ DNM K + P I K + +++TK
Sbjct: 159 NIFSTEFVIETADGRRLKKYKQASATVFSVCGFTKVFTDNMGKKSDPVITKCKANENWTK 218
Query: 245 ITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYT 303
+TF PDL KFKMT L++D+V L+ +R D A K VKV LNG + K+F+DY +L+
Sbjct: 219 VTFKPDLEKFKMTYLEEDVVALMKKRVLDMAGCLGKTVKVELNGTVIRFKSFKDYAELFL 278
Query: 304 DRQDEDG-DPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVK 362
++ P+ + V RWE+ ++ SD FQQVSFVNSIAT KGG HVD + + I
Sbjct: 279 KCAEKSKPSPLPRTHTKVGDRWEICVSLSDGQFQQVSFVNSIATIKGGTHVDYITNQITT 338
Query: 363 QIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHI 422
I+ V KK KD +K VKNH+
Sbjct: 339 YIMNKVNKKKKDAN------------------------------------VKAHTVKNHL 362
Query: 423 WIFINCLIVNPTFDSQTKENMTLQKGSFGSTC---------------------------- 454
W+F+N LI NP FDSQTKE +T + SFGS C
Sbjct: 363 WVFVNALIDNPAFDSQTKETLTTKPASFGSKCDVPESMLKDVEKSGIVDTLLSWADFKQS 422
Query: 455 ----------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKY 498
+ KLEDANDAG KNS CTLILTEGDSAK+LA++GL VVGRD Y
Sbjct: 423 KDLKKTDGTKTQRLRGIVKLEDANDAGGKNSDKCTLILTEGDSAKALAMAGLSVVGRDHY 482
Query: 499 GVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTD 558
GVFPLRGKLLNVR+A++KQ++EN EI N+ KILGLQ +K+YT V K+LRYG LMIM D
Sbjct: 483 GVFPLRGKLLNVRDASNKQVMENEEIQNIKKILGLQQNKEYTNV---KSLRYGHLMIMAD 539
Query: 559 QDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKAT------------------- 598
QD DGSHIKGL+INFIH WP+LL++P F+ EF TPII+ +
Sbjct: 540 QDHDGSHIKGLLINFIHSFWPSLLKVPSFMVEFTTPIIRVSIINAVCCIFDNENTELYMP 599
Query: 599 --------------------------------KAREELSFYSLPEFEEWKEETTN-WHTY 625
K +LSFYS+PE++ W+E N + +
Sbjct: 600 LSSRSLSVLILHLSLSLFFMMRYIYFAMQASHKNGTKLSFYSMPEYDAWRERLGNTANAW 659
Query: 626 KIKYYK 631
IKYYK
Sbjct: 660 AIKYYK 665
Score = 140 bits (352), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/115 (53%), Positives = 82/115 (71%), Gaps = 2/115 (1%)
Query: 658 GR-IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWY 716
GR IEP WYIPIIP+VLVNG+EGIGTGW + IPN+NPREI+ N++R++ E+ +PM PWY
Sbjct: 872 GRSIEPNWYIPIIPLVLVNGSEGIGTGWSSFIPNYNPREIIANVRRLLNDEEMVPMDPWY 931
Query: 717 KNFKGEIDYCG-DSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGA 770
K F+G I+ + ++VNG + +DD ITEL + KWT DYK L+ GA
Sbjct: 932 KGFRGTIEKSAKEGGYIVNGSVEEIDDITFRITELPIRKWTQDYKTFLELTTEGA 986
Score = 50.1 bits (118), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 67/168 (39%), Gaps = 28/168 (16%)
Query: 814 AKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLK 873
A+PQ G E E Q + E + A E DY+YLL ++ +LT+E +LL
Sbjct: 1132 AEPQVAGANDENSEDQE-DSERETASKSVNVEGATWGDYEYLLSLSIGTLTLESVQKLLD 1190
Query: 874 KRDDKMTELNILKKKAPTDLWSDDLDALREK----DKIHPCPGGNRTRGLALKRQTRYQP 929
++ DK E IL LW DLD L +K D+I G KR T
Sbjct: 1191 EKADKENEFEILMGTPSKSLWLKDLDELEKKLDELDRIEAEEGQ--------KRSTMSNK 1242
Query: 930 SNRVLTSRDEPMVVSSGEDAPPPTKASPVKKKKPAAKRPAPKSDSSDL 977
NR+ T P K P +K P++D+S +
Sbjct: 1243 KNRLATK---------------PAKKPPQPRKNTKKANVEPENDNSSM 1275
>gi|38453821|dbj|BAD02211.1| DNA topoisomerase II [Arthroderma benhamiae]
Length = 1089
Score = 560 bits (1444), Expect = e-156, Method: Compositional matrix adjust.
Identities = 307/651 (47%), Positives = 388/651 (59%), Gaps = 121/651 (18%)
Query: 38 KKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACD 97
K +QLEHIL RPDTYIGSVE + MW+ N T ME RE+++VPGLYKIFDEILVNA D
Sbjct: 1 KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60
Query: 98 NKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDE 157
NKQ DP M+ I++T+++E ISVWNNG+GIPV HK E++++P +IFGHLLTSSNYN
Sbjct: 61 NKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTSSNYN-- 118
Query: 158 EDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKS 217
D ++KVTGGRNGYGAKLCNIFS++F VET+ S+ KK
Sbjct: 119 -----------------------DMQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKK 155
Query: 218 FKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAS 277
FK W +NMS + +I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 156 FKLTWTNNMSTMGKAKITECKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAG- 214
Query: 278 TKDVKVFLNGEKLPVKNFQDYVKLYTD--RQDEDGDPVK------IIYENVNPRWEVAIA 329
T V LNG + P+K+F+ Y+++YT + + DP II E+ + RWE+
Sbjct: 215 TCGTAVKLNGTRTPIKSFKKYMEMYTKAIKAERGEDPTSASDKNDIITESPDRRWEIGFT 274
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ + D I ++ + +KKKNK
Sbjct: 275 VSDGSFQQVSFVNSIATTSGGTHVNYISDQICNKLADALKKKNKT--------------- 319
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LK Q+KNHI++F+N IVNP F SQTKE +T +
Sbjct: 320 --------------------GATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTRPSQ 359
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS CV PKL DAN AGT
Sbjct: 360 FGSKCVVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAGT 419
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI N
Sbjct: 420 KDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQN 479
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ +GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +PTLL++P
Sbjct: 480 IKNFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKIPG 536
Query: 586 FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K SF+++PE+EEWKE + ++ KYYK
Sbjct: 537 FLIEFITPIVKVWKGDPKNPTHSKSFFTIPEYEEWKEAHAHDKKWQKKYYK 587
Score = 137 bits (346), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 87/113 (76%), Gaps = 2/113 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P++L+NGA+GIGTGW T IPN+NP E+VDN+KR++ GE+ +PMKPW++ F
Sbjct: 797 IEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMVGEELVPMKPWFRGF 856
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KGE+ GD R+ +G I D+++EITEL + WT D+KD L+ ++ AEK
Sbjct: 857 KGEVTGSGD-RYKFSGIIKQTADNEVEITELPIRTWTQDFKDKLEEIIK-AEK 907
>gi|281208664|gb|EFA82840.1| DNA topoisomerase II [Polysphondylium pallidum PN500]
Length = 1524
Score = 560 bits (1444), Expect = e-156, Method: Compositional matrix adjust.
Identities = 312/674 (46%), Positives = 402/674 (59%), Gaps = 125/674 (18%)
Query: 15 NGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHME 74
N + P N SV++ Y++ L+ ILLRPDTYIGS E E +W+ E M
Sbjct: 120 NNSRKQPTTNITKNVKSVDETYKRMELLDQILLRPDTYIGSTEKQEEELWIW--ENERMV 177
Query: 75 RREITYVPGLYKIFDEILVNACDNKQR-----DPKMNCIKITVNQETNTISVWNNGKGIP 129
RR+I+YVPGLYKIFDEILVNA DN QR KM IK+ ++ E N I VWN+G G+P
Sbjct: 178 RRKISYVPGLYKIFDEILVNAADNIQRPLQEGQKKMKQIKVEIDPEHNRIMVWNDGPGVP 237
Query: 130 VVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGG 189
V HK E+M+VP MIF GHLLTSSNY+D E ++ GG
Sbjct: 238 VEMHKKEQMYVPEMIF-------------------------GHLLTSSNYDDSEKRLAGG 272
Query: 190 RNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFT 248
RNG+GAKL N FS++F+VE + S +K FKQ +K N+ PEI + SK D+T+ITF
Sbjct: 273 RNGFGAKLANAFSTEFLVECADSGRRKLFKQTFKANLKNREKPEITTYSKATDYTQITFY 332
Query: 249 PDLTKFKMTS-LDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQD 307
PDL+KF M S LD D V L+T+R YD A +KV LNGE L +K+FQ Y++LY +
Sbjct: 333 PDLSKFGMLSMLDDDNVALLTKRVYDIAGCNPSLKVTLNGEDLNIKSFQSYIQLYFKSLE 392
Query: 308 EDGDPVKIIYENVNPRWEVAIAPSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIE 366
+ +I YE V+ RWE+AIA S G F QVSFVNSI T KGG HV ++ ++ +I +
Sbjct: 393 K---APEIYYERVSERWEIAIALSHEGQFNQVSFVNSICTPKGGTHVTHALNDVLAEIGK 449
Query: 367 VVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFI 426
V+KK+K +KP +KNH+++F+
Sbjct: 450 AVQKKHK-----------------------------------SKAEIKPAFIKNHLFVFV 474
Query: 427 NCLIVNPTFDSQTKENMTLQKGSFGSTC-------------------------------- 454
N LI NP FDSQTKEN++ + SFGS C
Sbjct: 475 NSLIENPAFDSQTKENLSTKITSFGSQCHPSEKFLKKIVESKSGIVDQIISYAKHKEEMA 534
Query: 455 ----------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKY 498
+PKL+DAN AGT +S DCTLILTEGDSAK+LAVSG+ VVG D Y
Sbjct: 535 MLRNTTATTKKGSRLNIPKLDDANLAGTSHSEDCTLILTEGDSAKTLAVSGISVVGWDHY 594
Query: 499 GVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTD 558
G FPLRGKLLNVRE+ + ++ N EI N++ I+GLQ+ K+Y ED+K+LRYG LMIMTD
Sbjct: 595 GCFPLRGKLLNVRESDARTMMTNEEIVNIINIMGLQHGKQY---EDVKSLRYGHLMIMTD 651
Query: 559 QDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKE 617
QD DGSHIKGL++NFIHH WP+LLR+ FL EF+TPIIKATK + ++FY++PE+ W+E
Sbjct: 652 QDHDGSHIKGLLLNFIHHFWPSLLRIEGFLVEFVTPIIKATKGNKTIAFYTIPEYLAWRE 711
Query: 618 ETTNWHTYKIKYYK 631
N Y+IKYYK
Sbjct: 712 ANNNGKGYEIKYYK 725
Score = 130 bits (327), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 81/111 (72%), Gaps = 2/111 (1%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R++P+WYIP+IPM+LVNG++GIGTGW + IPN+NPR++++N+K +I G++ P+ PWY+
Sbjct: 934 RVQPKWYIPVIPMILVNGSKGIGTGWSSTIPNYNPRDLIENMKLLIEGKELKPIVPWYRG 993
Query: 719 FKG--EIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
FKG E+ S FV G LD+ +LEITEL + WT D+KD + L+
Sbjct: 994 FKGTIELQTGKTSNFVAKGVWRKLDEYRLEITELPIESWTNDFKDLVQNLI 1044
Score = 46.6 bits (109), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 826 QERQAAEGEDDEAGSQTQEEEDPD-KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNI 884
+E A + +E GS + E D D + YDYLL + WSLT+ER ++ ++R+ K EL+
Sbjct: 1240 EEELAVNSDQEEEGSDDEMEMDDDCRGYDYLLSLPLWSLTLERVKKIQEEREKKKVELDK 1299
Query: 885 LKKKAPTDLWSDDLDALRE 903
L+ A T ++ DLD E
Sbjct: 1300 LRGTAITTMYLLDLDKFSE 1318
>gi|38453823|dbj|BAD02212.1| DNA topoisomerase II [Arthroderma benhamiae]
Length = 1089
Score = 560 bits (1443), Expect = e-156, Method: Compositional matrix adjust.
Identities = 306/651 (47%), Positives = 388/651 (59%), Gaps = 121/651 (18%)
Query: 38 KKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACD 97
K +QLEHIL RPDTYIGSVE + MW+ N T ME RE+++VPGLYKIFDEILVNA D
Sbjct: 1 KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60
Query: 98 NKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDE 157
NKQ DP M+ I++T+++E ISVWNNG+GIPV HK E++++P +IFGHLLTSSNYN
Sbjct: 61 NKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKKEQIYIPELIFGHLLTSSNYN-- 118
Query: 158 EDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKS 217
D ++KVTGGRNGYGAKLCNIFS++F VET+ S+ KK
Sbjct: 119 -----------------------DMQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKK 155
Query: 218 FKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAS 277
FK W +NMS + +I DD+TK+TF PD KF M +D D L+ RR YD A
Sbjct: 156 FKLTWTNNMSTMGKAKITECKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAG- 214
Query: 278 TKDVKVFLNGEKLPVKNFQDYVKLYTD--RQDEDGDPVK------IIYENVNPRWEVAIA 329
T V LNG ++P+K+F+ Y+++YT + + DP II E+ + RWE+
Sbjct: 215 TCGTAVKLNGTRIPIKSFKKYMEMYTKAIKAERGEDPTSASDKNDIITESPDRRWEIGFT 274
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ + D I ++ + +KKKNK
Sbjct: 275 VSDGSFQQVSFVNSIATTSGGTHVNYISDQICNKLADALKKKNKT--------------- 319
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LK Q+KNHI++F+N IVNP F SQTKE +T +
Sbjct: 320 --------------------GATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTRPSQ 359
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS C PKL DAN AGT
Sbjct: 360 FGSKCAVSDDFLKKVMKTRVMDDILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAGT 419
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
K+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI N
Sbjct: 420 KDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQN 479
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ +GLQ+ K+YT D + LRYG LMIMTDQD DGSHIKGL+IN++ +PTLL++P
Sbjct: 480 IKNFIGLQHKKEYT---DTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKIPG 536
Query: 586 FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K SF+++PE+EEWKE + ++ KYYK
Sbjct: 537 FLIEFITPIVKVWKGDPKNPTHSKSFFTIPEYEEWKEAHAHDKKWQKKYYK 587
Score = 137 bits (346), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 87/113 (76%), Gaps = 2/113 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P++L+NGA+GIGTGW T IPN+NP E+VDN+KR++ GE+ +PMKPW++ F
Sbjct: 797 IEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMVGEELVPMKPWFRGF 856
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KGE+ GD R+ +G I D+++EITEL + WT D+KD L+ ++ AEK
Sbjct: 857 KGEVTGSGD-RYKFSGIIKQTADNEVEITELPIRTWTQDFKDKLEEIIK-AEK 907
>gi|320580632|gb|EFW94854.1| DNA topoisomerase II [Ogataea parapolymorpha DL-1]
Length = 1372
Score = 560 bits (1442), Expect = e-156, Method: Compositional matrix adjust.
Identities = 308/683 (45%), Positives = 407/683 (59%), Gaps = 138/683 (20%)
Query: 25 TPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGL 84
T K S YQK SQLEHIL RPDTYIGSVE I W+ N +T ME+R + VPGL
Sbjct: 31 TNGKKSSASDQYQKLSQLEHILKRPDTYIGSVEKIESEQWIYNEQTESMEKRTVNIVPGL 90
Query: 85 YKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMI 144
+KIFDEILVNA DNK RDP M I + +++E N ISV N+GKGIPV H E++++P +I
Sbjct: 91 FKIFDEILVNAADNKIRDPSMKKIDVKIDKENNVISVKNDGKGIPVEIHTKEQIYIPELI 150
Query: 145 FGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSK 204
FG+LLTSSNY +D++ KVTGGRNGYGAKLCNIFS++
Sbjct: 151 FGNLLTSSNY-------------------------DDDQKKVTGGRNGYGAKLCNIFSTE 185
Query: 205 FVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDM 263
F V T+ + + Q W++NMS+ P+I + K +++T++ F PDL+KF M SLD D+
Sbjct: 186 FTVRTADKNTQLLYTQTWRNNMSETGKPKISTMKKQEEYTEVIFKPDLSKFGMESLDDDI 245
Query: 264 VDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR-QDEDGD---PVK----- 314
+ ++ RR YD S + VKV LNG++L V NF+ YV+LY + E G+ PVK
Sbjct: 246 LGVLRRRVYDLCGSVRGVKVSLNGQQLKVHNFKQYVELYVKALEKEKGNLPAPVKTEDSE 305
Query: 315 ---------------IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDA 359
I+++ +N RWEVA + SD F QVSFVNSIATT GG HV+ + +
Sbjct: 306 DGSLAPAPLSQPLPTIVHQVINDRWEVAFSISDGTFNQVSFVNSIATTAGGTHVELISNM 365
Query: 360 IVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVK 419
+V +I+E +KKK +KT I +KP Q+K
Sbjct: 366 LVTKIMEQIKKK--------------------------SKTAI----------IKPIQIK 389
Query: 420 NHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--------------------------- 452
N++++F+NCLI NP F SQTKE +T + FG
Sbjct: 390 NNMFLFVNCLIENPAFTSQTKEQLTTRASQFGGKKLELPDSFVKKVLASGILESVMDIAQ 449
Query: 453 ------------------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVG 494
T PKLEDAN AGTK CTLILTEGDSAKSLAV+GL VVG
Sbjct: 450 ANADKALKKNDGSRKSRLTGYPKLEDANKAGTKEGHKCTLILTEGDSAKSLAVAGLAVVG 509
Query: 495 RDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLM 554
RD YG +PLRGK+LNVREA+ QI++NAEI + +I+GLQ+ K+Y + ++ TLRYG +M
Sbjct: 510 RDYYGCYPLRGKMLNVREASTDQIMKNAEIQAIKQIMGLQHKKRY-DLSNINTLRYGHIM 568
Query: 555 IMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKAT-----KAREELSFYS 608
IM+DQD DGSHIKGLIINF+ ++P LL +P FL EFITPI+K T +++SF++
Sbjct: 569 IMSDQDHDGSHIKGLIINFLETSFPGLLEIPGFLIEFITPIVKVTILTGPDKNKKISFFN 628
Query: 609 LPEFEEWKEETTNWHTYKIKYYK 631
+PE+EEW++ +YK KYYK
Sbjct: 629 MPEYEEWRDTIGKTCSYKQKYYK 651
Score = 120 bits (302), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 77/113 (68%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP+WY+P++PM+LVNG+EGIG+GW T+IP NP +IV NI+ ++ GE+ + M PW+K +
Sbjct: 861 VEPQWYVPVLPMILVNGSEGIGSGWSTQIPPFNPVDIVKNIRALMNGEEMVDMIPWFKGW 920
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
+G I G +F + G I +DD +EITEL WT K+ L + G++K
Sbjct: 921 EGTISRIGPDKFRMEGNIEEIDDTTVEITELPARMWTITMKEFLLQAIAGSDK 973
Score = 68.9 bits (167), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 842 TQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDA- 900
QE++ YDYLLGM WSLT ER +LLK+RD+K ELN L +K+ DLW++DLD
Sbjct: 1140 VQEKKTAVSAYDYLLGMPLWSLTSERYEKLLKQRDEKEAELNNLLRKSAKDLWNEDLDVF 1199
Query: 901 LREKDKI 907
L E DK
Sbjct: 1200 LEEWDKF 1206
>gi|255718235|ref|XP_002555398.1| KLTH0G08338p [Lachancea thermotolerans]
gi|238936782|emb|CAR24961.1| KLTH0G08338p [Lachancea thermotolerans CBS 6340]
Length = 1436
Score = 559 bits (1441), Expect = e-156, Method: Compositional matrix adjust.
Identities = 310/664 (46%), Positives = 403/664 (60%), Gaps = 126/664 (18%)
Query: 30 MSVEKI----YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLY 85
MS EK YQK SQLEHIL RPDTY+GSVE +T W+ + T+ M + + VPGL+
Sbjct: 1 MSAEKSASERYQKISQLEHILKRPDTYVGSVEIQEQTQWIHDEATDCMVEKNVKIVPGLF 60
Query: 86 KIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIF 145
KIFDEILVNA DNK RDP M I++ +N+E N I V N+GKGIP+ H+ E++++P MIF
Sbjct: 61 KIFDEILVNAADNKVRDPSMKKIEVNINKEENFIEVKNDGKGIPIEIHEKEQIYIPEMIF 120
Query: 146 GHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF 205
GHLLTSSNY+D +E KVTGGRNGYGAKLCNIFSS+F
Sbjct: 121 GHLLTSSNYDD-------------------------DEKKVTGGRNGYGAKLCNIFSSEF 155
Query: 206 VVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMV 264
++ET+ + + Q W+ NMS P+I S K +TK++F PDL +F M LD D+V
Sbjct: 156 ILETADPIKGEKYLQKWEANMSICHKPKITSYKKGPSYTKVSFKPDLQRFGMEHLDDDIV 215
Query: 265 DLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY--------TDRQDED-GDPVKI 315
++ RR +D S +D+ V+LNG+ L ++NF++YV+LY ++ Q D G I
Sbjct: 216 GIMRRRVFDINGSVRDISVYLNGKSLRIRNFKNYVELYLKSLEKKKSEEQGADVGKAPTI 275
Query: 316 IYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDL 375
+YE +N RWE+A A SD FQQ+SFVNSIATT GG HV+ V D IVK+I E
Sbjct: 276 LYERLNDRWEIAFAVSDVAFQQISFVNSIATTSGGTHVNYVSDQIVKKITE--------- 326
Query: 376 GCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTF 435
+ + G +K FQ+KNHI+IF+NC I NP F
Sbjct: 327 ---------------------------HLKKKKKGKTIKAFQIKNHIFIFVNCQIENPAF 359
Query: 436 DSQTKENMTLQKGSFGSTCVPK-------------------------------------- 457
SQTKE +T + FGS C K
Sbjct: 360 TSQTKEQLTTRVRDFGSKCDIKDEFINKIMKTELAERVFELADQNEEKALQKSDGSRKNR 419
Query: 458 ------LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVR 511
LEDAN AGTK CTL+LTEG SA+SLAV+GL VVGRD YG +PLRGK+LNVR
Sbjct: 420 ITKYATLEDANCAGTKQGYKCTLVLTEGLSAQSLAVAGLAVVGRDYYGCYPLRGKMLNVR 479
Query: 512 EATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLII 571
EA+ +QI +NAEI + KI+GLQ+ KKY ED K+LRYG +MIMTDQD DGSHIKGLII
Sbjct: 480 EASAEQINKNAEIQAIKKIVGLQHRKKY---EDTKSLRYGHIMIMTDQDHDGSHIKGLII 536
Query: 572 NFIHHNWPTLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFEEWKEETTNWHTYKI 627
NF+ ++P LL +P FL EFITPI+K T R+ +SFY++P++EEW+E+ ++ +++K
Sbjct: 537 NFLESSFPGLLDIPGFLIEFITPIVKVTITRPKRDVISFYNMPDYEEWREKESHKYSWKQ 596
Query: 628 KYYK 631
KYYK
Sbjct: 597 KYYK 600
Score = 112 bits (280), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 71/113 (62%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP+WY+P+IPM+LVNGAEGIGTGW T IP NP EIV NIK+++ GE M P+Y+ +
Sbjct: 810 IEPQWYLPVIPMILVNGAEGIGTGWSTNIPCFNPLEIVQNIKKLMNGEPMDDMAPFYRGW 869
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
+G + R+ + G I + LEITEL W + K+ L L G EK
Sbjct: 870 EGRLQKIDGQRYRMYGRIEQVGPRTLEITELPAKTWISTIKEHLLLGLAGNEK 922
Score = 53.1 bits (126), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 830 AAEGEDDEAGSQTQEEEDPDKD----YDYLLGMTFWSLTMERKNELLKKRDDKMTELNIL 885
AA +D+E + E + +D ++YLLGM WSLT E+ +LL ++ +K EL+ L
Sbjct: 1078 AAYSDDNEDPEEESNEVNGPQDKYGTFEYLLGMKIWSLTKEKYEKLLNQKQEKEVELDNL 1137
Query: 886 KKKAPTDLWSDDLDAL 901
+ + DLW DLDA
Sbjct: 1138 LRLSAKDLWCQDLDAF 1153
>gi|440638703|gb|ELR08622.1| hypothetical protein GMDG_03313 [Geomyces destructans 20631-21]
Length = 1665
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 303/674 (44%), Positives = 402/674 (59%), Gaps = 121/674 (17%)
Query: 15 NGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHME 74
N +GP+ K P + + ++ YQK + L+HIL RPDTYIGSVE + MW+ N +T ME
Sbjct: 124 NLDGPTESK--PKSGSATDR-YQKLTPLQHILKRPDTYIGSVERTEQQMWVFNSQTEQME 180
Query: 75 RREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHK 134
R++ YVPGLYKIFDEILVNA DNKQ D M +K+TV++E ISV N+G+GIPV H
Sbjct: 181 TRKVQYVPGLYKIFDEILVNAADNKQNDSNMKALKVTVDREKGEISVENDGRGIPVEIHN 240
Query: 135 DEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYG 194
EK+++P MIFGHLLTSSNY+D EE K TGGRNGYG
Sbjct: 241 KEKIYIPEMIFGHLLTSSNYDD-------------------------EESKTTGGRNGYG 275
Query: 195 AKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKF 254
AKLCNIFS+ F +ET S+ K +KQ W DNMS + +I + DFT+ITF PD KF
Sbjct: 276 AKLCNIFSTSFTLETQDSKNGKRYKQTWTDNMSNMGKAKITANKSSDFTRITFNPDWKKF 335
Query: 255 KMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-----TDRQDED 309
+M +D D L+ RR YD A + K V V+LNG K+ V +F+ Y+++Y +R +D
Sbjct: 336 QMDGIDDDFEGLVKRRVYDLAGTVKGVSVYLNGTKIKVNSFKKYIEMYAKAINAERGLQD 395
Query: 310 GD---PVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIE 366
+ V + ++ + RWE+ A SD FQQVSFVNSIATT GG HV + D I +++++
Sbjct: 396 AEVKTSVIVDDDDSHKRWEIGFAVSDGSFQQVSFVNSIATTSGGTHVSYIADQICQRLLD 455
Query: 367 VVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFI 426
VKK NK G ALK Q++NHI++F+
Sbjct: 456 HVKKINKQ-----------------------------------GTALKTNQIRNHIFLFV 480
Query: 427 NCLIVNPTFDSQTKENMTLQKGSFGSTCV------------------------------- 455
NCLIVNP F SQTKE +T + FGS C
Sbjct: 481 NCLIVNPAFTSQTKEQLTTKVSQFGSKCQVTEEFLKKIVKTDAVANIMHFAQQKADQVLS 540
Query: 456 ------------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPL 503
PKL DAN AGT+ +CTLILTEGDSAK+LAV+G ++ D+ GVFPL
Sbjct: 541 KSDGNRRSRMTNPKLVDANLAGTRRGHECTLILTEGDSAKALAVAGRAILDPDRIGVFPL 600
Query: 504 RGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDG 563
RGK+LNVR+A+ QI +NAEI N+ + LGL++ + YT + + LRYG LMIM DQD DG
Sbjct: 601 RGKMLNVRDASIDQISKNAEIQNIKQFLGLKHKQVYTDPQS-QGLRYGHLMIMADQDHDG 659
Query: 564 SHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKA---REELS--FYSLPEFEEWKE 617
SHIKGL+INF+H +P+LL+LP F +EFITPI+K K R +S F+++P+++EW+E
Sbjct: 660 SHIKGLLINFLHVAFPSLLKLPNFFQEFITPIVKVWKGPNPRTAISRTFFTMPQYDEWRE 719
Query: 618 ETTNWHTYKIKYYK 631
+ ++K KYYK
Sbjct: 720 RHKHERSWKHKYYK 733
Score = 112 bits (280), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 77/118 (65%), Gaps = 7/118 (5%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMI-----RGEDPL-PM 712
RIEP+ Y PI+PMVL+NGAEGIGTGW T IPN++P +IV N+KR + E P M
Sbjct: 942 RIEPKVYCPIVPMVLINGAEGIGTGWSTSIPNYHPEDIVTNLKRRMGRLDSSEEQPFETM 1001
Query: 713 KPWYKNFKGEIDYCGDSRFVVNGEIA-ILDDDKLEITELQVGKWTTDYKDTLDTLLHG 769
PW++ +KG ++ G RF +G I D+++EITEL + WT D+K L+ ++ G
Sbjct: 1002 TPWFRGWKGVVEEAGPDRFRADGRITEGPGDNEVEITELPIRVWTDDFKGKLEEVIKG 1059
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 68/141 (48%), Gaps = 22/141 (15%)
Query: 781 RKSHPRPIAPKSYKIDDDSEEEEIEEVFHDNELAKPQKTGPQLERQER------------ 828
RK H I K Y+ + +E + DN+L +KT P+L + R
Sbjct: 1145 RKQHWLDIFGKEYRKLSNQARFVLEII--DNKLVVSKKTKPKLVAELRAKKYEPFPKVKD 1202
Query: 829 --QAAEGED----DEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTEL 882
+A E +D DE G EE +DYDYLLG+ WSLT ER ++L ++ DK EL
Sbjct: 1203 AKKAGEADDVVENDEEGPDN--EEGGARDYDYLLGLPIWSLTQERVDKLKRQMVDKKAEL 1260
Query: 883 NILKKKAPTDLWSDDLDALRE 903
+ L + DLW DLDA E
Sbjct: 1261 DDLDSLSEKDLWCRDLDAFLE 1281
>gi|402220357|gb|EJU00429.1| DNA topoisomerase II [Dacryopinax sp. DJM-731 SS1]
Length = 1365
Score = 558 bits (1439), Expect = e-155, Method: Compositional matrix adjust.
Identities = 297/692 (42%), Positives = 413/692 (59%), Gaps = 122/692 (17%)
Query: 4 DESDFDPDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETM 63
+E DF P + PS P K + +IY++ +EH+L RPD+YIGSVE T+ +
Sbjct: 82 EEFDFGPPDPIEDDMPSVSAPKPKQKKNASEIYERLDAVEHVLKRPDSYIGSVERKTDLI 141
Query: 64 WLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWN 123
W+++ ET M R +VPG +KI DEILVNA D+K + M+ +K+ +++E +ISV+N
Sbjct: 142 WVLDPETKRMVNRSTKFVPGFFKIVDEILVNAADHKVNEAAMDTLKVVIDREKKSISVYN 201
Query: 124 NGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEE 183
NG GIPV H E M++P +IFG+L + SNY +D E
Sbjct: 202 NGAGIPVEMHTKENMYIPQLIFGNLFSGSNY-------------------------DDTE 236
Query: 184 DKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDD-F 242
K+TGGRNG+GAKL NI+S +F VET+ S+ K +KQ+WKDNMS P I + SK D +
Sbjct: 237 KKLTGGRNGFGAKLANIYSHEFTVETADSKNGKKYKQMWKDNMSICGKPSITNYSKSDGW 296
Query: 243 TKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY 302
TK++FTPDL +F MT +D D L+ +R YD A + KDVKVFLN E+L +KNF+ Y+ LY
Sbjct: 297 TKVSFTPDLARFGMTEIDDDTYALLCKRVYDLAGTIKDVKVFLNDERLRIKNFKQYIDLY 356
Query: 303 ----TDRQDEDGDPVK----IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVD 354
+ E G + ++YE +NPRWEV SD FQQVSF NSI+T KGG HV+
Sbjct: 357 LNSVAEANVESGATAQPKQTVVYEQLNPRWEVGFVVSDGQFQQVSFANSISTIKGGTHVE 416
Query: 355 AVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALK 414
+ I +++ ++KKNK +K
Sbjct: 417 TIASQISNKLLTAIQKKNK------------------------------------SAPVK 440
Query: 415 PFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS---------------------- 452
PFQ++NH+W+F+NCL+ N FDSQTK+ +TL+ SFGS
Sbjct: 441 PFQIRNHMWLFVNCLVENAAFDSQTKDTLTLKSTSFGSRPTITDEFMKKVAKSGIVENVL 500
Query: 453 ----------------------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGL 490
+ KL DAN+AG +N+ C+LIL EGDSAK+LA +GL
Sbjct: 501 EYAKFKADQAHKKTDGTKRSRLVGMAKLVDANNAGGRNASKCSLILCEGDSAKTLAEAGL 560
Query: 491 GVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRY 550
VVGRD +G+FPLRGKLLNVREA H+QI++NAEI + KI+GLQ++K Y +V+ +LRY
Sbjct: 561 AVVGRDNFGIFPLRGKLLNVREANHEQIMKNAEIQAIKKIMGLQHNKVYDSVD---SLRY 617
Query: 551 GRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKAT--KAREELSFY 607
G +MIMTDQD DGSHIKGLIINF+ H +P+LL++P FL EFITPI++ T + R+ +F+
Sbjct: 618 GSIMIMTDQDFDGSHIKGLIINFLDHFYPSLLKIPGFLVEFITPIVRVTHKRTRKRTTFF 677
Query: 608 SLPEFEEWKEE-TTNWHTYKI-KYYKVVYVTG 637
++PE+EEW E+ + H Y+ KY+K + +G
Sbjct: 678 TMPEYEEWAEQHKHDKHLYEDPKYFKGLGTSG 709
Score = 137 bits (346), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 82/114 (71%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPE+Y+PIIPMVLVNG+ GIGTGW T IP+ NP +IV NI+R +R E PM PWY+N
Sbjct: 912 RIEPEFYLPIIPMVLVNGSSGIGTGWSTNIPSFNPVDIVANIRRYMRHEPLEPMSPWYRN 971
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F G + + +FV +G I +DD +EITEL +G+WT YK+ L++ + G +K
Sbjct: 972 FLGSFEKVSEGKFVCHGIIKKVDDYNVEITELPIGRWTQKYKEMLESWIMGDDK 1025
Score = 65.9 bits (159), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 78/173 (45%), Gaps = 18/173 (10%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK------ 904
D+DYLLGM +SLT ER N LL + K EL L K++P D+W++DLD EK
Sbjct: 1187 DFDYLLGMAIYSLTQERINRLLLDCERKEGELKALLKQSPQDIWNNDLDVFLEKWENLLE 1246
Query: 905 DKIHPCPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAPPPTKASPVKKKKPA 964
D + NR + R + S + + +D P KA P K +KPA
Sbjct: 1247 DDVAMQNNENRKKKGKQGATIRTRKS----VGKGKKRADDHSDDDFIPAKA-PSKPRKPA 1301
Query: 965 AKRP------APKSDSSDLS-DSDGDSDFASRKKKTAAAKKAKPAKKESEYSS 1010
A +P AP + ++S DS D D + + K K A K Y S
Sbjct: 1302 APKPAVAKPTAPPPKAEEISDDSLMDVDSSPVAARAVGKGKGKAAVKRGSYVS 1354
>gi|401411475|ref|XP_003885185.1| hypothetical protein NCLIV_055820 [Neospora caninum Liverpool]
gi|325119604|emb|CBZ55157.1| hypothetical protein NCLIV_055820 [Neospora caninum Liverpool]
Length = 1641
Score = 558 bits (1438), Expect = e-155, Method: Compositional matrix adjust.
Identities = 320/749 (42%), Positives = 407/749 (54%), Gaps = 188/749 (25%)
Query: 1 MSSDESDFDPDVQQNGNGPSPKKKTPANKM--------SVEKIYQKKSQLEHILLRPDTY 52
MSS E D D Q + SP + TP N ++E+ YQKKSQLEHILLRPDTY
Sbjct: 1 MSSSE---DEDFQSSSPSRSPPRSTPENGKKSGGGKPKTIEQRYQKKSQLEHILLRPDTY 57
Query: 53 IGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDP--------- 103
IGS E T+++W+M M + I YVPGLYKI DEILVNA D K R+
Sbjct: 58 IGSTEMHTQSLWVMEEGQECMVYKTINYVPGLYKIVDEILVNAADVKAREGEEKKGKPLK 117
Query: 104 ----KMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEED 159
+M+ IKI +N+ I++WN+G+GIPV H++ K++VP MI
Sbjct: 118 PGARRMSAIKIDINKSAGRITIWNDGEGIPVAIHQEHKVYVPEMI--------------- 162
Query: 160 KVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFK 219
FG LLTS NY+D E +VTGGRNGYGAKL NIFSS+F VE + E KK FK
Sbjct: 163 ----------FGQLLTSDNYDDSECRVTGGRNGYGAKLTNIFSSEFTVECADGERKKKFK 212
Query: 220 QVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTK 279
W NM + T PEI S + D+ KI+F PD KF M D D + L+ +RAYD A T
Sbjct: 213 MTWTRNMGQKTEPEISSYNGTDYVKISFVPDFAKFGMRGFDDDSLSLLRKRAYDLAG-TA 271
Query: 280 DVKVFLNGEKLPVKNFQDYVKLYT------------------------------------ 303
V+VFLNG ++ V +F YV LY
Sbjct: 272 GVRVFLNGTRIDVSSFSQYVDLYLGGRKSEKPRKEKDEDDAGDDSDDDWDEGPKRKKGAK 331
Query: 304 --------DRQDEDGDPVKII-YENVNPRWEVAIAPSDRG-FQQVSFVNSIATTKGGRHV 353
D + E+G K+I RWE+ I+ +D G FQQVSFVNSI TTKGG HV
Sbjct: 332 KRKKDGQDDEETENGVETKVIKIHEKQWRWEIVISSTDGGQFQQVSFVNSICTTKGGSHV 391
Query: 354 DAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMAL 413
V++ ++ I++ KNK GGM +
Sbjct: 392 THVLEPLLAAIVKKANTKNK-----------------------------------GGMEI 416
Query: 414 KPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC------------------- 454
K VK H+WIF++CLIVNP FDSQTKE +T + FGS C
Sbjct: 417 KAAHVKQHLWIFVSCLIVNPAFDSQTKETLTTKPAKFGSKCTLADKTIGAVVKSSIVENV 476
Query: 455 -----------------------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSL 485
+PKLEDANDAG ++S +CTLILTEGDSAK+
Sbjct: 477 VLWAQTKQQVELRKQMKVGKTKGRERLSGIPKLEDANDAGGRHSQECTLILTEGDSAKTS 536
Query: 486 AVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDM 545
++GL VVGRD+YGVFPLRGKLLNVR+A+ KQ+ EN EI N++KI+GLQ + + ED
Sbjct: 537 CLAGLSVVGRDRYGVFPLRGKLLNVRDASFKQLTENKEIQNILKIVGLQVNDR---TEDA 593
Query: 546 KTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL-PFLEEFITPIIKATKAREEL 604
+ LRYG +MIMTDQD DGSHIKGL+IN +HH WP LL+ FL+ F+TPI+K +K E
Sbjct: 594 RGLRYGSVMIMTDQDHDGSHIKGLLINMMHHYWPQLLKCRGFLKAFLTPIVKVSKNNVEK 653
Query: 605 SFYSLPEFEEWKEE--TTNWHTYKIKYYK 631
+FY++PE+E+WK TT W +IKYYK
Sbjct: 654 AFYTIPEYEQWKRSCNTTGW---RIKYYK 679
Score = 123 bits (309), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 80/115 (69%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEP+ Y+P+IP VL+NG+EGIGTGW + +PN+NPR++++N++R I GE+ M PWY+
Sbjct: 888 RIEPKMYVPVIPTVLINGSEGIGTGWSSFVPNYNPRDVIENLRRYIDGEEMQRMTPWYRG 947
Query: 719 FKGEI-DYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F+G+I + + F +G + + EITEL + KWT DYK+ L+ L AEK
Sbjct: 948 FRGKIEENSAGTGFETSGLVEKCGEGAFEITELPIKKWTQDYKEWLEENLPTAEK 1002
Score = 44.3 bits (103), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHP 909
K YDYLLGM WSLT+E+ +L + +K EL LK+ + LW DLDAL +
Sbjct: 1181 KHYDYLLGMPMWSLTLEKVEDLRGEMREKELELEELKRTSVQTLWKRDLDAL-----VAA 1235
Query: 910 CPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAPPPTKASPVKKKK 962
+ + L+ R+Q R + ++ + + P K P KKK
Sbjct: 1236 LDKQDEIDEMLLQEGRRFQKKARA----GQALLQAKKKLKAAPQKGKPAAKKK 1284
>gi|19880936|gb|AAM00578.1|AF458979_3 TOP2 [Saccharomyces cerevisiae]
Length = 1428
Score = 558 bits (1437), Expect = e-155, Method: Compositional matrix adjust.
Identities = 310/667 (46%), Positives = 401/667 (60%), Gaps = 126/667 (18%)
Query: 26 PANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLY 85
P +S YQK SQLEHIL RPDTYIGSVE + W+ + ET+ M + +T VPGL+
Sbjct: 2 PTEPVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLF 61
Query: 86 KIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIF 145
KIFDEILVNA DNK RDP M I + ++ E +TI V N+GKGIP+ H E +++P MIF
Sbjct: 62 KIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIF 121
Query: 146 GHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF 205
GHLLTSSNY+D+E KVTGGRNGYGAKLCNIFS++F
Sbjct: 122 -------------------------GHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEF 156
Query: 206 VVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMV 264
++ET+ + + Q W++NMS P+I S K +TK+TF PDLT+F M LD D++
Sbjct: 157 ILETADLNVGQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDIL 216
Query: 265 DLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD-----RQDEDG-------DP 312
++ RR YD S +D+ V+LNG+ L ++NF++YV+LY RQ ++G D
Sbjct: 217 GVMRRRVYDINGSVRDINVYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGTAKSDI 276
Query: 313 VKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKN 372
I+YE +N RWEVA A SD FQQ+SFVNSIATT GG HV+ + D
Sbjct: 277 PTILYERINNRWEVAFAVSDISFQQISFVNSIATTMGGTHVNYITD-------------- 322
Query: 373 KDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVN 432
Q+ K + +I + ++K FQ+KN+++IFINCLI N
Sbjct: 323 -----------------------QIVKKISEILKKKKKKSVKSFQIKNNMFIFINCLIEN 359
Query: 433 PTFDSQTKENMTLQKGSFGSTC-------------------------------------- 454
P F SQTKE +T + FGS C
Sbjct: 360 PAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIMKTDLATRMFEIADANEENALKKSDGTR 419
Query: 455 ------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLL 508
PKLEDAN AGTK CTL+LTEGDSA SLAV+GL VVGRD YG +PLRGK+L
Sbjct: 420 KSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKML 479
Query: 509 NVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKG 568
NVREA+ QIL+NAEI + KI+GLQ+ KKY ED K+LRYG LMIMTDQD DGSHIKG
Sbjct: 480 NVREASADQILKNAEIQAIKKIMGLQHRKKY---EDTKSLRYGHLMIMTDQDHDGSHIKG 536
Query: 569 LIINFIHHNWPTLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFEEWKEETTNWHT 624
LIINF+ ++P LL + FL EFITPIIK + + ++FY++P++E+W+EE ++ T
Sbjct: 537 LIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFT 596
Query: 625 YKIKYYK 631
+K KYYK
Sbjct: 597 WKQKYYK 603
Score = 113 bits (283), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 73/113 (64%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PI+PM+LVNGAEGIGTGW T IP NP EI+ NI+ ++ E+ M PW++ +
Sbjct: 813 VEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGW 872
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G I+ R+ + G I + D+ LEITEL WT+ K+ L L G +K
Sbjct: 873 TGTIEEIEPLRYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDK 925
Score = 54.7 bits (130), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
Y+YLLGM WSLT ER +LLK++ +K TEL L K + D+W+ DL A
Sbjct: 1113 YEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAF 1162
>gi|219121760|ref|XP_002181228.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407214|gb|EEC47151.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1143
Score = 558 bits (1437), Expect = e-155, Method: Compositional matrix adjust.
Identities = 310/691 (44%), Positives = 417/691 (60%), Gaps = 135/691 (19%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
K +VE+ YQK SQLEHIL+RPDTYIGSVEP T+ M+++ E + + +EITY PGL+KIF
Sbjct: 2 KKTVEETYQKMSQLEHILIRPDTYIGSVEPHTKLMFIL--EDDKIIEKEITYTPGLFKIF 59
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEI+VNA DNKQRDP M+ + +T+N E N IS+ NNGKGIP+V HK+ ++VP +I G
Sbjct: 60 DEIVVNAADNKQRDPNMDKLDVTINAEENVISIQNNGKGIPIVMHKEHGIYVPELILG-- 117
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
HLLT SN++D E K TGGRNGYGAKL N+FS++FVVE
Sbjct: 118 -----------------------HLLTGSNFDDGERKTTGGRNGYGAKLANVFSTEFVVE 154
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKD-----DFTKITFTPDLTKFKMTSLDKDM 263
+ +E ++QV+++NM + P +K+ + D+ KITF+PDL +FKM LD+D
Sbjct: 155 CADTENGLKYRQVFRENMKQKDKPVVKALTAKEMKAADYVKITFSPDLERFKMDRLDEDT 214
Query: 264 VDLITRRAYDAA-----ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYE 318
V L+++RAYD A +S K + V LNG+KLP+K+F+D++ ++ +G +E
Sbjct: 215 VGLLSKRAYDIAGTMSQSSGKKLLVSLNGKKLPIKSFKDFIGVF------EGINKPSAFE 268
Query: 319 NV----NPRWEVAIAPSD-RGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNK 373
V + RWEV +A SD +QVSFVNSI+T+KGG HV + D + + + + KKNK
Sbjct: 269 TVRLANSDRWEVGVAASDDAAMKQVSFVNSISTSKGGTHVQYIADQVASHLAKAITKKNK 328
Query: 374 DLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNP 433
G +K +KNH+ IF+NCLI NP
Sbjct: 329 K-----------------------------------GGEVKASFIKNHLAIFVNCLIENP 353
Query: 434 TFDSQTKENMTLQKGSFGSTC--------------------------------------- 454
FDSQTKE MT + FGSTC
Sbjct: 354 AFDSQTKEFMTSKPKDFGSTCKLSDSFLKKLEKSAIVENVLAFSQFRDRQALKNKSGKKK 413
Query: 455 -----VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLN 509
+ KL+DAN AGT S DCTLI+TEGDSAKSLA++GL V+GRD YGVFPLRGK LN
Sbjct: 414 AKLTGIDKLDDANFAGTAKSKDCTLIITEGDSAKSLAMAGLSVIGRDYYGVFPLRGKPLN 473
Query: 510 VREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGL 569
VR+A K + N EI N+V+I+GL++ Y ++K LRYG LMIM DQD DGSHIKGL
Sbjct: 474 VRDAPIKAVTSNEEIKNVVEIMGLKFQTVYDET-NIKQLRYGHLMIMADQDNDGSHIKGL 532
Query: 570 IINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEET-TNWHTYKI 627
IINFIH+ WP+LL +P FL++FITPI+K +K ++ SF++LPE+E W E T N H +KI
Sbjct: 533 IINFIHNFWPSLLDIPGFLQQFITPIVKVSKGQKSQSFFNLPEYENWLESTGKNGHGWKI 592
Query: 628 KYYKVVYVTGVLLFK-----MNLHKVTSDSI 653
KYYK + + K ++LH+V D++
Sbjct: 593 KYYKGLGTSTSAEAKEYFSNLDLHEVLPDTV 623
Score = 122 bits (305), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 82/118 (69%), Gaps = 5/118 (4%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPE+Y+P+IPM+LVNGA+GIGTGW T + N+NPREIV N++R I GED + M P+Y F
Sbjct: 808 VEPEYYVPVIPMILVNGADGIGTGWSTSVNNYNPREIVRNLRRKIAGEDFVAMAPFYSGF 867
Query: 720 KGE-IDYCGDSR----FVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KGE I +SR + + G++ ++D + I+EL V KWT DYK L+ +L G K
Sbjct: 868 KGEIIPVDSNSRRSGSYDMLGKVERINDTTIIISELPVRKWTQDYKAFLEIMLTGDGK 925
Score = 67.0 bits (162), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Query: 805 EEVFHDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLT 864
+++ H+ + G +E ++GE+D +++Q + + + Y+YLLGM WSLT
Sbjct: 1050 QDILHELRNRGYETFGADARSKETSDSDGEEDSI-NESQSDAELARGYEYLLGMKIWSLT 1108
Query: 865 MERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
E+ EL +K +K TELN L+ +P++LW +DLD
Sbjct: 1109 FEKAEELRRKLGEKTTELNALQGTSPSELWLNDLD 1143
>gi|259149274|emb|CAY82516.1| Top2p [Saccharomyces cerevisiae EC1118]
Length = 1428
Score = 557 bits (1436), Expect = e-155, Method: Compositional matrix adjust.
Identities = 310/667 (46%), Positives = 401/667 (60%), Gaps = 126/667 (18%)
Query: 26 PANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLY 85
P +S YQK SQLEHIL RPDTYIGSVE + W+ + ET+ M + +T VPGL+
Sbjct: 2 PTEPVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLF 61
Query: 86 KIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIF 145
KIFDEILVNA DNK RDP M I + ++ E +TI V N+GKGIP+ H E +++P MIF
Sbjct: 62 KIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIF 121
Query: 146 GHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF 205
GHLLTSSNY+D+E KVTGGRNGYGAKLCNIFS++F
Sbjct: 122 -------------------------GHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEF 156
Query: 206 VVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMV 264
++ET+ + + Q W++NMS P+I S K +TK+TF PDLT+F M LD D++
Sbjct: 157 ILETADLNVGQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDIL 216
Query: 265 DLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD-----RQDEDG-------DP 312
++ RR YD S +D+ V+LNG+ L ++NF++YV+LY RQ ++G D
Sbjct: 217 GVMRRRVYDINGSVRDINVYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDI 276
Query: 313 VKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKN 372
I+YE +N RWEVA A SD FQQ+SFVNSIATT GG HV+ + D
Sbjct: 277 PTILYERINNRWEVAFAVSDISFQQISFVNSIATTMGGTHVNYITD-------------- 322
Query: 373 KDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVN 432
Q+ K + +I + ++K FQ+KN+++IFINCLI N
Sbjct: 323 -----------------------QIVKKISEILKKKKKKSVKSFQIKNNMFIFINCLIEN 359
Query: 433 PTFDSQTKENMTLQKGSFGSTC-------------------------------------- 454
P F SQTKE +T + FGS C
Sbjct: 360 PAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIMKTDLATRMFEIADANEENALKKSDGTR 419
Query: 455 ------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLL 508
PKLEDAN AGTK CTL+LTEGDSA SLAV+GL VVGRD YG +PLRGK+L
Sbjct: 420 KSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKML 479
Query: 509 NVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKG 568
NVREA+ QIL+NAEI + KI+GLQ+ KKY ED K+LRYG LMIMTDQD DGSHIKG
Sbjct: 480 NVREASADQILKNAEIQAIKKIMGLQHRKKY---EDTKSLRYGHLMIMTDQDHDGSHIKG 536
Query: 569 LIINFIHHNWPTLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFEEWKEETTNWHT 624
LIINF+ ++P LL + FL EFITPIIK + + ++FY++P++E+W+EE ++ T
Sbjct: 537 LIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFT 596
Query: 625 YKIKYYK 631
+K KYYK
Sbjct: 597 WKQKYYK 603
Score = 113 bits (283), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 73/113 (64%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PI+PM+LVNGAEGIGTGW T IP NP EI+ NI+ ++ E+ M PW++ +
Sbjct: 813 VEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGW 872
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G I+ R+ + G I + D+ LEITEL WT+ K+ L L G +K
Sbjct: 873 TGTIEEIEPLRYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDK 925
Score = 54.7 bits (130), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
Y+YLLGM WSLT ER +LLK++ +K TEL L K + D+W+ DL A
Sbjct: 1113 YEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAF 1162
>gi|406603298|emb|CCH45177.1| DNA topoisomerase II [Wickerhamomyces ciferrii]
Length = 1503
Score = 556 bits (1434), Expect = e-155, Method: Compositional matrix adjust.
Identities = 310/691 (44%), Positives = 411/691 (59%), Gaps = 138/691 (19%)
Query: 9 DP--DVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLM 66
DP D Q N +PKKK +V + YQK SQLEHIL RPDTYIGS E +W+
Sbjct: 3 DPLGDAQSKVNKMTPKKK------NVSEQYQKLSQLEHILKRPDTYIGSTEHQESNLWIY 56
Query: 67 NRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGK 126
+ +T M + + VPGL+KIFDEILVNA DNK RDP M I++T+N E N I + N+G+
Sbjct: 57 DDQTESMMEKPVKLVPGLFKIFDEILVNAADNKIRDPSMKKIEVTINPEENLIEIKNDGR 116
Query: 127 GIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKV 186
GIP+ H+ E +++P +IFG+LLTSSNY +D+E KV
Sbjct: 117 GIPIEMHEKEGIYIPELIFGNLLTSSNY-------------------------DDDEKKV 151
Query: 187 TGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKI 245
GGRNGYGAKLCNIFS++F VET+ K + Q W +NM+K P+IK+ K ++TKI
Sbjct: 152 VGGRNGYGAKLCNIFSTEFTVETADKNTMKIYTQTWNNNMTKTNKPKIKTVKKPQEYTKI 211
Query: 246 TFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY--- 302
+F PDL KF M LD D + ++ RR YD A + +DV V LNG L +++F+ YV++Y
Sbjct: 212 SFKPDLAKFNMEILDNDTLGVLRRRVYDIAGTLRDVNVSLNGTTLKIRSFKQYVEMYIKA 271
Query: 303 --TDRQDEDGDPVK-------IIYENVNP-----RWEVAIAPSDRGFQQVSFVNSIATTK 348
+ E+G+P I+Y+ + RWE+A SD F QVSFVNSIATT
Sbjct: 272 LEAKKALENGEPSSEDSKKPTIVYKKIEDPKSKGRWEIAFGVSDSAFNQVSFVNSIATTS 331
Query: 349 GGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRL 408
GG HV+ + D IV +I +V+KK++K+
Sbjct: 332 GGTHVNYIADQIVDKIGDVLKKRHKN---------------------------------- 357
Query: 409 GGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS---------------- 452
+KPFQ++N++++F+NCLI NP F SQTKE M+ ++ FGS
Sbjct: 358 --STVKPFQIRNNMFLFVNCLIENPAFTSQTKEQMSTRRQQFGSEIKVPDDFINQVLKTE 415
Query: 453 ----------------------------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKS 484
T KLEDAN AGT+ CTLILTEGDSA S
Sbjct: 416 FISNILDAAQANADKALRKTDGSKKSRITNYSKLEDANKAGTREGYKCTLILTEGDSALS 475
Query: 485 LAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVED 544
LAV+GL VVGRD +G FPLRGK+LNVR+A++ QI +NAEI + +I+GLQ+ KKY ED
Sbjct: 476 LAVAGLAVVGRDYFGCFPLRGKMLNVRDASNDQITKNAEIQAIKQIMGLQHKKKY---ED 532
Query: 545 MKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKA--TKAR 601
+K+LRYGR+MIMTDQD DGSHIKGLIINF+ ++P LL +P FL EFITPI+K TK R
Sbjct: 533 LKSLRYGRIMIMTDQDTDGSHIKGLIINFLETSFPGLLNIPGFLLEFITPIVKVNITKPR 592
Query: 602 EE-LSFYSLPEFEEWKEETTNWHTYKIKYYK 631
E L+FY++PE+E W E ++ +T+ KYYK
Sbjct: 593 RETLAFYNMPEYESWIENESHQYTWTHKYYK 623
Score = 130 bits (326), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 79/113 (69%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP WY+PIIPMVLVNGAEGIGTGW T +P NP ++V+N+KR++ ++ L M+PWYK +
Sbjct: 833 VEPTWYLPIIPMVLVNGAEGIGTGWSTNVPQFNPADLVENMKRLMNNQELLEMEPWYKGW 892
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G+I G ++ V G+I LDD+ L ITEL V WT K+ L L G++K
Sbjct: 893 DGQIQKIGPDKYKVYGKIEKLDDNTLAITELPVKTWTASVKEQLLLGLGGSDK 945
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 819 TGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDK 878
T Q+ E +G D +A S E+ YDYLLG+ WSLT ER +LL+++ +K
Sbjct: 1097 TQDQIVADEDAEDDGLDADA-STVHIRENVFSSYDYLLGLPIWSLTRERYEKLLQQKANK 1155
Query: 879 MTELNILKKKAPTDLWSDDLD 899
EL L K DLW+ DLD
Sbjct: 1156 EDELTELLKLTSKDLWNRDLD 1176
>gi|410945801|pdb|4GFH|F Chain F, Topoisomerase Ii-Dna-Amppnp Complex
Length = 1099
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 310/628 (49%), Positives = 398/628 (63%), Gaps = 103/628 (16%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEHIL RPDTYIGSVE + W+ + ET+ M + +T VPGL+KIFDEILVNA
Sbjct: 6 YQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNA 65
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP M I + ++ E +TI V N+GKGIP+ H E +++P MIFGHLLTSSNY+
Sbjct: 66 ADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYD 125
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D +E KVTGGRNGYGAKLCNIFS++F++ET+
Sbjct: 126 D-------------------------DEKKVTGGRNGYGAKLCNIFSTEFILETADLNVG 160
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
+ + Q W++NMS P+I S K +TK+TF PDLT+F M LD D++ ++ RR YD
Sbjct: 161 QKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDI 220
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRG 334
S +D+ V+LNG+ L ++NF++YV+LY + P I+YE +N RWEVA A SD
Sbjct: 221 NGSVRDINVYLNGKSLKIRNFKNYVELYL----KSLIPT-ILYERINNRWEVAFAVSDIS 275
Query: 335 FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNK 394
FQQ+SFVNSIATT GG HV+ + D IVK+I E++KKK K
Sbjct: 276 FQQISFVNSIATTMGGTHVNYITDQIVKKISEILKKKKK--------------------- 314
Query: 395 LQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC 454
++K FQ+KN+++IFINCLI NP F SQTKE +T + FGS C
Sbjct: 315 ----------------KSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRC 358
Query: 455 ----------------------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLA 486
PKLEDAN AGTK CTL+LTEGDSA SLA
Sbjct: 359 EIPLEYINKIMKTDLATRMFEIASRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLA 418
Query: 487 VSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMK 546
V+GL VVGRD YG +PLRGK+LNVREA+ QIL+NAEI + KI+GLQ+ KKY ED K
Sbjct: 419 VAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKY---EDTK 475
Query: 547 TLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKAT---KARE 602
+LRYG LMIMTDQD DGSHIKGLIINF+ ++P LL + FL EFITPIIK + +
Sbjct: 476 SLRYGHLMIMTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKN 535
Query: 603 ELSFYSLPEFEEWKEETTNWHTYKIKYY 630
++FY++P++E+W+EE ++ T+K KYY
Sbjct: 536 TIAFYNMPDYEKWREEESHKFTWKQKYY 563
Score = 113 bits (283), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 73/113 (64%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PI+PM+LVNGAEGIGTGW T IP NP EI+ NI+ ++ E+ M PW++ +
Sbjct: 771 VEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGW 830
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G I+ R+ + G I + D+ LEITEL WT+ K+ L L G +K
Sbjct: 831 TGTIEEIEPLRYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDK 883
Score = 54.7 bits (130), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
Y+YLLGM WSLT ER +LLK++ +K TEL L K + D+W+ DL A
Sbjct: 1035 YEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAF 1084
>gi|331251443|ref|XP_003338318.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1164
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 308/681 (45%), Positives = 396/681 (58%), Gaps = 162/681 (23%)
Query: 17 NGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERR 76
NGP+ KK A++ YQK SQLEH+L RPDTYIGSVE I + MW+ ++E M +
Sbjct: 97 NGPAGSKKKTASET-----YQKLSQLEHVLKRPDTYIGSVEAIRQFMWIFDKEKKTMVNK 151
Query: 77 EITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDE 136
EI++VPGLYKI DEILVNA DNKQRD M+ +K+T++ E N ISV NNGKGIP+ H+ E
Sbjct: 152 EISFVPGLYKIVDEILVNAADNKQRDDSMDTLKVTIDSEKNIISVMNNGKGIPIEIHETE 211
Query: 137 KMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAK 196
++++P +IFGHLL SN++D EE K TGGRNGYGAK
Sbjct: 212 QIYIPELIFGHLLAGSNFDD-------------------------EEKKTTGGRNGYGAK 246
Query: 197 LCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFK 255
L NI+S++F+VE + + K +KQ++K+NMS P+I K +++TKI+F PDL KF
Sbjct: 247 LANIYSTEFIVEAADKQTAKKYKQIFKNNMSVKEKPKITENKKGEEYTKISFKPDLVKFN 306
Query: 256 M---TSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDED--- 309
+ L DM LI++R YD A + ++VKV+LN E++ + F+ YV++YT +E
Sbjct: 307 LPAENGLAGDMEALISKRVYDMAGTLRNVKVWLNDERIKLTGFKKYVEMYTSGVNEAIKG 366
Query: 310 ---------GDP------VKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVD 354
G P IIYE RWE+A APSD FQQVSF NSIATTKGG HV+
Sbjct: 367 SAAKALEAPGSPGNGATKTPIIYEECGKRWEIAFAPSDGQFQQVSFCNSIATTKGGTHVE 426
Query: 355 AVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALK 414
+V +V++IIE V KK L LK
Sbjct: 427 HIVKQLVEKIIESVNKKKAKL------------------------------------TLK 450
Query: 415 PFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTCV------------------- 455
P+QV+NH+W+F+NCLI NPTFDSQTKENMTL FGS CV
Sbjct: 451 PYQVRNHLWVFVNCLIENPTFDSQTKENMTLGMSKFGSKCVMTEEFMKKVMKSGVIDSVM 510
Query: 456 -------------------------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGL 490
KLEDAN+AGT+ + DCTLILTEGDSAKSLAV+GL
Sbjct: 511 DFAKFKEEAALKKTDGSKRSRITGIVKLEDANNAGTRKAADCTLILTEGDSAKSLAVAGL 570
Query: 491 GVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRY 550
V+GRD YGVFPLRGKLLNVREA+ Q+L NAEI ++ +I+GLQ KKY + + +LRY
Sbjct: 571 SVIGRDNYGVFPLRGKLLNVREASGAQLLNNAEIQHIKQIMGLQQGKKYASRD---SLRY 627
Query: 551 GRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLP 610
G LMIMTDQ EFITPI+K T+ +EELSF+++P
Sbjct: 628 GSLMIMTDQ---------------------------AIEFITPIVKVTRKKEELSFFTMP 660
Query: 611 EFEEWKEETTNWHTYKIKYYK 631
EFE+WKEE + + KYYK
Sbjct: 661 EFEKWKEENDDGRGWTSKYYK 681
Score = 123 bits (308), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 77/114 (67%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPEWYIPI+PMVLVNG+ GIGTGW + IPN+NP +IV+N++R + E PM PW++
Sbjct: 890 QIEPEWYIPILPMVLVNGSSGIGTGWSSDIPNYNPVDIVNNLRRRLANEPMEPMHPWFRG 949
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F G+I ++ V GE D+D +EITEL V W YK+ ++ ++ +K
Sbjct: 950 FTGQITSEAPGKYKVLGEWDQPDEDTIEITELPVRVWNQSYKEQIEAWINSTDK 1003
>gi|349580849|dbj|GAA26008.1| K7_Top2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1428
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 308/657 (46%), Positives = 398/657 (60%), Gaps = 126/657 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEHIL RPDTYIGSVE + W+ + ET+ M + +T VPGL+KIFDEILVNA
Sbjct: 12 YQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNA 71
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP M I + ++ E +TI V N+GKGIP+ H E +++P MIF
Sbjct: 72 ADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIF---------- 121
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLLTSSNY+D+E KVTGGRNGYGAKLCNIFS++F++ET+
Sbjct: 122 ---------------GHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVG 166
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
+ + Q W++NMS P+I S K +TK+TF PDLT+F M LD D++ ++ RR YD
Sbjct: 167 QKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDI 226
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTD-----RQDEDG-------DPVKIIYENVNP 322
S +D+ V+LNG+ L ++NF++YV+LY RQ ++G D I+YE +N
Sbjct: 227 NGSVRDINVYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGTAKSDIPTILYERINN 286
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RWEVA A SD FQQ+SFVNSIATT GG HV+ + D
Sbjct: 287 RWEVAFAVSDISFQQISFVNSIATTMGGTHVNYITD------------------------ 322
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
Q+ K + +I + ++K FQ+KN+++IFINCLI NP F SQTKE
Sbjct: 323 -------------QIVKKISEILKKKKKKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQ 369
Query: 443 MTLQKGSFGSTC--------------------------------------------VPKL 458
+T + FGS C PKL
Sbjct: 370 LTTRVKDFGSRCEIPLEYINKIMKTDLATRMFEIADANEENALKKSDGTRKSRITNYPKL 429
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
EDAN AGTK CTL+LTEGDSA SLAV+GL VVGRD YG +PLRGK+LNVREA+ QI
Sbjct: 430 EDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQI 489
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNW 578
L+NAEI + KI+GLQ+ KKY ED K+LRYG LMIMTDQD DGSHIKGLIINF+ ++
Sbjct: 490 LKNAEIQAIKKIMGLQHRKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSF 546
Query: 579 PTLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P LL + FL EFITPIIK + + ++FY++P++E+W+EE ++ T+K KYYK
Sbjct: 547 PGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYYK 603
Score = 114 bits (284), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 73/113 (64%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PI+PM+LVNGAEGIGTGW T IP NP EI+ NI+ ++ E+ M PW++ +
Sbjct: 813 VEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGW 872
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G I+ R+ + G I + D+ LEITEL WT+ K+ L L G +K
Sbjct: 873 TGTIEEIEPLRYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDK 925
Score = 54.7 bits (130), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
Y+YLLGM WSLT ER +LLK++ +K TEL L K + D+W+ DL A
Sbjct: 1113 YEYLLGMRIWSLTKERYEKLLKQKQEKETELENLLKLSAKDIWNTDLKAF 1162
>gi|19880873|gb|AAM00524.1|AF458970_3 TOP2 [Saccharomyces cerevisiae]
Length = 1428
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 308/657 (46%), Positives = 399/657 (60%), Gaps = 126/657 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEHIL RPDTYIGSVE + W+ + ET+ M + +T VPGL+KIFDEILVNA
Sbjct: 12 YQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNA 71
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP M I + ++ E +TI V N+GKGIP+ H E +++P MIF
Sbjct: 72 ADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIF---------- 121
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLLTSSNY+D+E KVTGGRNGYGAKLCNIFS++F++ET+
Sbjct: 122 ---------------GHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVG 166
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
+ + Q W++NMS P+I S K +TK+TF PDLT+F M LD D++ ++ RR YD
Sbjct: 167 QKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDI 226
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTD-----RQDEDG-------DPVKIIYENVNP 322
S +D+ V+LNG+ L ++NF++YV+LY RQ ++G D I+YE +N
Sbjct: 227 NGSVRDINVYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGTAKSDIPTILYERINN 286
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RWEVA A SD FQQ+SFVNSIATT GG HV+ + D
Sbjct: 287 RWEVAFAVSDISFQQISFVNSIATTMGGTHVNYITD------------------------ 322
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
Q+ K +++I + ++K FQ+KN+++IFINCLI NP F SQTKE
Sbjct: 323 -------------QIVKKILEILKKKKKKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQ 369
Query: 443 MTLQKGSFGSTC--------------------------------------------VPKL 458
+T + FGS C PKL
Sbjct: 370 LTTRVKDFGSRCEIPLEYINKIMKTDLATRMFEIADANEENALKKSDGTRKSRITNYPKL 429
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
EDAN AGTK CTL+LTEGDSA SLAV+GL VVGRD YG +PLRGK+LNVREA+ QI
Sbjct: 430 EDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQI 489
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNW 578
L+NAEI + KI+GLQ+ KKY ED K+LRYG LMIMTDQD DGSHIKGLIINF+ ++
Sbjct: 490 LKNAEIQAIKKIMGLQHRKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSF 546
Query: 579 PTLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P LL + FL EFITPIIK + + ++FY++P++E+W+EE ++ T+K KYYK
Sbjct: 547 PGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYYK 603
Score = 114 bits (284), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 73/113 (64%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PI+PM+LVNGAEGIGTGW T IP NP EI+ NI+ ++ E+ M PW++ +
Sbjct: 813 VEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGW 872
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G I+ R+ + G I + D+ LEITEL WT+ K+ L L G +K
Sbjct: 873 TGTIEEIEPLRYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDK 925
Score = 54.7 bits (130), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
Y+YLLGM WSLT ER +LLK++ +K TEL L K + D+W+ DL A
Sbjct: 1113 YEYLLGMRIWSLTKERYEKLLKQKQEKETELENLLKLSAKDIWNTDLKAF 1162
>gi|190409077|gb|EDV12342.1| DNA topoisomerase 2 [Saccharomyces cerevisiae RM11-1a]
Length = 1428
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 308/657 (46%), Positives = 398/657 (60%), Gaps = 126/657 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEHIL RPDTYIGSVE + W+ + ET+ M + +T VPGL+KIFDEILVNA
Sbjct: 12 YQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNA 71
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP M I + ++ E +TI V N+GKGIP+ H E +++P MIF
Sbjct: 72 ADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIF---------- 121
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLLTSSNY+D+E KVTGGRNGYGAKLCNIFS++F++ET+
Sbjct: 122 ---------------GHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVG 166
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
+ + Q W++NMS P+I S K +TK+TF PDLT+F M LD D++ ++ RR YD
Sbjct: 167 QKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDI 226
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTD-----RQDEDG-------DPVKIIYENVNP 322
S +D+ V+LNG+ L ++NF++YV+LY RQ ++G D I+YE +N
Sbjct: 227 NGSVRDINVYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGTAKSDIPTILYERINN 286
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RWEVA A SD FQQ+SFVNSIATT GG HV+ + D
Sbjct: 287 RWEVAFAVSDISFQQISFVNSIATTMGGTHVNYITD------------------------ 322
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
Q+ K + +I + ++K FQ+KN+++IFINCLI NP F SQTKE
Sbjct: 323 -------------QIVKKISEILKKKKKKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQ 369
Query: 443 MTLQKGSFGSTC--------------------------------------------VPKL 458
+T + FGS C PKL
Sbjct: 370 LTTRVKDFGSRCEIPLEYINKIMKTDLATRMFEIADANEENALKKSDGTRKSRITNYPKL 429
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
EDAN AGTK CTL+LTEGDSA SLAV+GL VVGRD YG +PLRGK+LNVREA+ QI
Sbjct: 430 EDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQI 489
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNW 578
L+NAEI + KI+GLQ+ KKY ED K+LRYG LMIMTDQD DGSHIKGLIINF+ ++
Sbjct: 490 LKNAEIQAIKKIMGLQHRKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSF 546
Query: 579 PTLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P LL + FL EFITPIIK + + ++FY++P++E+W+EE ++ T+K KYYK
Sbjct: 547 PGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYYK 603
Score = 113 bits (283), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 73/113 (64%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PI+PM+LVNGAEGIGTGW T IP NP EI+ NI+ ++ E+ M PW++ +
Sbjct: 813 VEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGW 872
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G I+ R+ + G I + D+ LEITEL WT+ K+ L L G +K
Sbjct: 873 TGTIEEIEPLRYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDK 925
Score = 55.1 bits (131), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
Y+YLLGM WSLT ER +LLK++ +K TEL L K + D+W+ DL A
Sbjct: 1113 YEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAF 1162
>gi|19880901|gb|AAM00548.1|AF458974_3 TOP2 [Saccharomyces cerevisiae]
Length = 1428
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 308/657 (46%), Positives = 398/657 (60%), Gaps = 126/657 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEHIL RPDTYIGSVE + W+ + ET+ M + +T VPGL+KIFDEILVNA
Sbjct: 12 YQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNA 71
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP M I + ++ E +TI V N+GKGIP+ H E +++P MIF
Sbjct: 72 ADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIF---------- 121
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLLTSSNY+D+E KVTGGRNGYGAKLCNIFS++F++ET+
Sbjct: 122 ---------------GHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVG 166
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
+ + Q W++NMS P+I S K +TK+TF PDLT+F M LD D++ ++ RR YD
Sbjct: 167 QKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDI 226
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTD-----RQDEDG-------DPVKIIYENVNP 322
S +D+ V+LNG+ L ++NF++YV+LY RQ ++G D I+YE +N
Sbjct: 227 NGSVRDINVYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGTAKSDIPTILYERINN 286
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RWEVA A SD FQQ+SFVNSIATT GG HV+ + D
Sbjct: 287 RWEVAFAVSDISFQQISFVNSIATTMGGTHVNYITD------------------------ 322
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
Q+ K + +I + ++K FQ+KN+++IFINCLI NP F SQTKE
Sbjct: 323 -------------QIVKKISEILKKKKKKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQ 369
Query: 443 MTLQKGSFGSTC--------------------------------------------VPKL 458
+T + FGS C PKL
Sbjct: 370 LTTRVKDFGSRCEIPLEYINKIMKTDLATRMFEIADANEENALKKSDGTRKSRITNYPKL 429
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
EDAN AGTK CTL+LTEGDSA SLAV+GL VVGRD YG +PLRGK+LNVREA+ QI
Sbjct: 430 EDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQI 489
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNW 578
L+NAEI + KI+GLQ+ KKY ED K+LRYG LMIMTDQD DGSHIKGLIINF+ ++
Sbjct: 490 LKNAEIQAIKKIMGLQHRKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSF 546
Query: 579 PTLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P LL + FL EFITPIIK + + ++FY++P++E+W+EE ++ T+K KYYK
Sbjct: 547 PGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYYK 603
Score = 113 bits (283), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 73/113 (64%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PI+PM+LVNGAEGIGTGW T IP NP EI+ NI+ ++ E+ M PW++ +
Sbjct: 813 VEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGW 872
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G I+ R+ + G I + D+ LEITEL WT+ K+ L L G +K
Sbjct: 873 TGTIEEIEPLRYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDK 925
Score = 54.7 bits (130), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
Y+YLLGM WSLT ER +LLK++ +K TEL L K + D+W+ DL A
Sbjct: 1113 YEYLLGMRIWSLTKERYEKLLKQKQEKETELENLLKLSAKDIWNTDLKAF 1162
>gi|223634721|sp|Q01879.3|TOP2_PICGU RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
II
gi|190347620|gb|EDK39928.2| hypothetical protein PGUG_04026 [Meyerozyma guilliermondii ATCC
6260]
Length = 1400
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 315/705 (44%), Positives = 409/705 (58%), Gaps = 134/705 (19%)
Query: 1 MSSDESDFDPDVQQNGNGPSPKKKT---------PANKMSVEKIYQKKSQLEHILLRPDT 51
S SDF P G P + + PA + ++ YQK SQLEHIL RPDT
Sbjct: 16 FSDASSDFTPSSSVKSKGKVPLRDSTNTTAQPSAPATGDASDQ-YQKLSQLEHILKRPDT 74
Query: 52 YIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKIT 111
YIGSVE MW + T M +E+ VPGLYKIFDEILVNA DNK RDP M IK+
Sbjct: 75 YIGSVEKTGVEMWSFDAATESMIYKEVHIVPGLYKIFDEILVNAADNKIRDPSMRNIKVN 134
Query: 112 VNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFG 171
++ E NTISV N+GKGIP+ HK EK+++P +IF G
Sbjct: 135 IDAENNTISVMNDGKGIPIEIHKKEKIYIPELIF-------------------------G 169
Query: 172 HLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTS 231
+LLTSSNY+D+E KVTGGRNGYGAKLCNIFS++FV+ET+ + +KQ W +NM+ +T
Sbjct: 170 NLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFVLETADLNTSQVYKQTWTNNMANLTK 229
Query: 232 PEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKL 290
P+I K SK ++TK+TF PDL+KF M LD D++ ++ RR YD + KD ++LN +KL
Sbjct: 230 PKITKLKSKKEYTKVTFKPDLSKFHMEMLDDDILSVLRRRVYDLCGTVKDCNIYLNDKKL 289
Query: 291 PVKNFQDYVKLYTDR-QDEDGDPVK----------IIYENVNPRWEVAIAPSDRGFQQVS 339
++NF+ YV++Y + ++ DPV I++E N RWEVA A SD F QVS
Sbjct: 290 SIRNFKSYVEMYVNAIRERSPDPVAPEGETRNYSTIVHEVFNDRWEVAFAVSDGSFNQVS 349
Query: 340 FVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAK 399
FVNSIATT GG HV V D I+ ++I+
Sbjct: 350 FVNSIATTSGGTHVKYVSDQIITKLIDA-------------------------------- 377
Query: 400 TLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS------- 452
L + +KP +V+N++++FINCLI NP F SQTKE +T + FG
Sbjct: 378 -LTKKEKGKKKLNIKPQEVRNNMFVFINCLIENPAFTSQTKEQLTTRVAQFGGKPSEKIV 436
Query: 453 -----------TCVP------------------------------KLEDANDAGTKNSID 471
T + KL DAN AGTK
Sbjct: 437 ISDQFIAKILKTSIADKIRTIVNANEDKEMSKADGSRKSRIKNQVKLVDANKAGTKEGYK 496
Query: 472 CTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKIL 531
CTLILTEGDSA LAV+GL VVGRD YG FPLRGKLLNVREA+ +Q+ +NAEIN++ +I+
Sbjct: 497 CTLILTEGDSAMPLAVAGLTVVGRDYYGCFPLRGKLLNVREASIEQVSKNAEINSIKQIM 556
Query: 532 GLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEF 590
GLQ+ K+YT E++K+LRYG +MIMTDQDQDGSHIKGLIINF+ ++P LL +P FL EF
Sbjct: 557 GLQHKKRYTP-ENIKSLRYGHIMIMTDQDQDGSHIKGLIINFLETSFPGLLEIPGFLLEF 615
Query: 591 ITPIIKATKA----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
ITPI+K T + FY++PEFE+W+E +K KY+K
Sbjct: 616 ITPIVKVTITGRGNHRVIPFYNMPEFEKWRETEGTTCKWKHKYFK 660
Score = 128 bits (321), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 78/104 (75%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPE Y+PIIPM+LVNGAEGIGTGW T IP+ NP +IV NI+RM+ GE+P+ M PW+K +
Sbjct: 870 VEPEAYLPIIPMLLVNGAEGIGTGWSTNIPSFNPVDIVANIRRMMNGEEPVDMTPWFKGW 929
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTL 763
+G+++ ++ V+G+I +DDD +EITE+ + WT K+ L
Sbjct: 930 EGDLERISPEKYKVSGKIEQVDDDTVEITEIPIKTWTNSVKEFL 973
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 36/48 (75%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
YDYLLGM WSLT ER +LL++RD+K ELN L KK+ DLW+ DLD
Sbjct: 1168 YDYLLGMAIWSLTRERYEKLLRQRDEKQEELNELLKKSAKDLWNSDLD 1215
>gi|19880950|gb|AAM00590.1|AF458981_3 TOP2 [Saccharomyces cerevisiae]
Length = 1428
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 308/657 (46%), Positives = 398/657 (60%), Gaps = 126/657 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEHIL RPDTYIGSVE + W+ + ET+ M + +T VPGL+KIFDEILVNA
Sbjct: 12 YQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNA 71
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP M I + ++ E +TI V N+GKGIP+ H E +++P MIF
Sbjct: 72 ADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIF---------- 121
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLLTSSNY+D+E KVTGGRNGYGAKLCNIFS++F++ET+
Sbjct: 122 ---------------GHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVG 166
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
+ + Q W++NMS P+I S K +TK+TF PDLT+F M LD D++ ++ RR YD
Sbjct: 167 QKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDI 226
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTD-----RQDEDG-------DPVKIIYENVNP 322
S +D+ V+LNG+ L ++NF++YV+LY RQ ++G D I+YE +N
Sbjct: 227 NGSVRDINVYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINN 286
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RWEVA A SD FQQ+SFVNSIATT GG HV+ + D
Sbjct: 287 RWEVAFAVSDISFQQISFVNSIATTMGGTHVNYITD------------------------ 322
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
Q+ K + +I + ++K FQ+KN+++IFINCLI NP F SQTKE
Sbjct: 323 -------------QIVKKISEILKKKKKKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQ 369
Query: 443 MTLQKGSFGSTC--------------------------------------------VPKL 458
+T + FGS C PKL
Sbjct: 370 LTTRVKDFGSRCEIPLEYINKIMKTDLATRMFEIADANEENALKKSDGTRKSRITNYPKL 429
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
EDAN AGTK CTL+LTEGDSA SLAV+GL VVGRD YG +PLRGK+LNVREA+ QI
Sbjct: 430 EDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQI 489
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNW 578
L+NAEI + KI+GLQ+ KKY ED K+LRYG LMIMTDQD DGSHIKGLIINF+ ++
Sbjct: 490 LKNAEIQAIKKIMGLQHRKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSF 546
Query: 579 PTLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P LL + FL EFITPIIK + + ++FY++P++E+W+EE ++ T+K KYYK
Sbjct: 547 PGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYYK 603
Score = 113 bits (283), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 73/113 (64%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PI+PM+LVNGAEGIGTGW T IP NP EI+ NI+ ++ E+ M PW++ +
Sbjct: 813 VEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGW 872
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G I+ R+ + G I + D+ LEITEL WT+ K+ L L G +K
Sbjct: 873 TGTIEEIEPLRYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDK 925
Score = 54.7 bits (130), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
Y+YLLGM WSLT ER +LLK++ +K TEL L K + D+W+ DL A
Sbjct: 1113 YEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAF 1162
>gi|19880908|gb|AAM00554.1|AF458975_3 TOP2 [Saccharomyces cerevisiae]
gi|19880915|gb|AAM00560.1|AF458976_3 TOP2 [Saccharomyces cerevisiae]
gi|19880922|gb|AAM00566.1|AF458977_3 TOP2 [Saccharomyces cerevisiae]
gi|71064112|gb|AAZ22520.1| Top2p [Saccharomyces cerevisiae]
gi|151944446|gb|EDN62724.1| topoisomerase II [Saccharomyces cerevisiae YJM789]
gi|392296902|gb|EIW08003.1| Top2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1428
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 308/657 (46%), Positives = 398/657 (60%), Gaps = 126/657 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEHIL RPDTYIGSVE + W+ + ET+ M + +T VPGL+KIFDEILVNA
Sbjct: 12 YQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNA 71
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP M I + ++ E +TI V N+GKGIP+ H E +++P MIF
Sbjct: 72 ADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIF---------- 121
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLLTSSNY+D+E KVTGGRNGYGAKLCNIFS++F++ET+
Sbjct: 122 ---------------GHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVG 166
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
+ + Q W++NMS P+I S K +TK+TF PDLT+F M LD D++ ++ RR YD
Sbjct: 167 QKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDI 226
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTD-----RQDEDG-------DPVKIIYENVNP 322
S +D+ V+LNG+ L ++NF++YV+LY RQ ++G D I+YE +N
Sbjct: 227 NGSVRDINVYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGTAKSDIPTILYERINN 286
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RWEVA A SD FQQ+SFVNSIATT GG HV+ + D
Sbjct: 287 RWEVAFAVSDISFQQISFVNSIATTMGGTHVNYITD------------------------ 322
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
Q+ K + +I + ++K FQ+KN+++IFINCLI NP F SQTKE
Sbjct: 323 -------------QIVKKISEILKKKKKKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQ 369
Query: 443 MTLQKGSFGSTC--------------------------------------------VPKL 458
+T + FGS C PKL
Sbjct: 370 LTTRVKDFGSRCEIPLEYINKIMKTDLATRMFEIADANEENALKKSDGTRKSRITNYPKL 429
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
EDAN AGTK CTL+LTEGDSA SLAV+GL VVGRD YG +PLRGK+LNVREA+ QI
Sbjct: 430 EDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQI 489
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNW 578
L+NAEI + KI+GLQ+ KKY ED K+LRYG LMIMTDQD DGSHIKGLIINF+ ++
Sbjct: 490 LKNAEIQAIKKIMGLQHRKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSF 546
Query: 579 PTLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P LL + FL EFITPIIK + + ++FY++P++E+W+EE ++ T+K KYYK
Sbjct: 547 PGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYYK 603
Score = 113 bits (283), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 73/113 (64%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PI+PM+LVNGAEGIGTGW T IP NP EI+ NI+ ++ E+ M PW++ +
Sbjct: 813 VEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGW 872
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G I+ R+ + G I + D+ LEITEL WT+ K+ L L G +K
Sbjct: 873 TGTIEEIEPLRYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDK 925
Score = 55.1 bits (131), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
Y+YLLGM WSLT ER +LLK++ +K TEL L K + D+W+ DL A
Sbjct: 1113 YEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAF 1162
>gi|398364937|ref|NP_014311.3| DNA topoisomerase 2 [Saccharomyces cerevisiae S288c]
gi|1351262|sp|P06786.2|TOP2_YEAST RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
II
gi|19880866|gb|AAM00518.1|AF458969_3 TOP2 [Saccharomyces cerevisiae]
gi|19880880|gb|AAM00530.1|AF458971_3 TOP2 [Saccharomyces cerevisiae]
gi|19880887|gb|AAM00536.1|AF458972_3 TOP2 [Saccharomyces cerevisiae]
gi|887623|emb|CAA61422.1| ORF N2244 [Saccharomyces cerevisiae]
gi|1301989|emb|CAA95964.1| TOP2 [Saccharomyces cerevisiae]
gi|285814563|tpg|DAA10457.1| TPA: DNA topoisomerase 2 [Saccharomyces cerevisiae S288c]
Length = 1428
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 308/657 (46%), Positives = 398/657 (60%), Gaps = 126/657 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEHIL RPDTYIGSVE + W+ + ET+ M + +T VPGL+KIFDEILVNA
Sbjct: 12 YQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNA 71
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP M I + ++ E +TI V N+GKGIP+ H E +++P MIF
Sbjct: 72 ADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIF---------- 121
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLLTSSNY+D+E KVTGGRNGYGAKLCNIFS++F++ET+
Sbjct: 122 ---------------GHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVG 166
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
+ + Q W++NMS P+I S K +TK+TF PDLT+F M LD D++ ++ RR YD
Sbjct: 167 QKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDI 226
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTD-----RQDEDG-------DPVKIIYENVNP 322
S +D+ V+LNG+ L ++NF++YV+LY RQ ++G D I+YE +N
Sbjct: 227 NGSVRDINVYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINN 286
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RWEVA A SD FQQ+SFVNSIATT GG HV+ + D
Sbjct: 287 RWEVAFAVSDISFQQISFVNSIATTMGGTHVNYITD------------------------ 322
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
Q+ K + +I + ++K FQ+KN+++IFINCLI NP F SQTKE
Sbjct: 323 -------------QIVKKISEILKKKKKKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQ 369
Query: 443 MTLQKGSFGSTC--------------------------------------------VPKL 458
+T + FGS C PKL
Sbjct: 370 LTTRVKDFGSRCEIPLEYINKIMKTDLATRMFEIADANEENALKKSDGTRKSRITNYPKL 429
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
EDAN AGTK CTL+LTEGDSA SLAV+GL VVGRD YG +PLRGK+LNVREA+ QI
Sbjct: 430 EDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQI 489
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNW 578
L+NAEI + KI+GLQ+ KKY ED K+LRYG LMIMTDQD DGSHIKGLIINF+ ++
Sbjct: 490 LKNAEIQAIKKIMGLQHRKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSF 546
Query: 579 PTLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P LL + FL EFITPIIK + + ++FY++P++E+W+EE ++ T+K KYYK
Sbjct: 547 PGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYYK 603
Score = 113 bits (283), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 73/113 (64%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PI+PM+LVNGAEGIGTGW T IP NP EI+ NI+ ++ E+ M PW++ +
Sbjct: 813 VEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGW 872
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G I+ R+ + G I + D+ LEITEL WT+ K+ L L G +K
Sbjct: 873 TGTIEEIEPLRYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDK 925
Score = 55.1 bits (131), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
Y+YLLGM WSLT ER +LLK++ +K TEL L K + D+W+ DL A
Sbjct: 1113 YEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAF 1162
>gi|19880929|gb|AAM00572.1|AF458978_3 TOP2 [Saccharomyces cerevisiae]
Length = 1428
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 308/657 (46%), Positives = 398/657 (60%), Gaps = 126/657 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEHIL RPDTYIGSVE + W+ + ET+ M + +T VPGL+KIFDEILVNA
Sbjct: 12 YQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNA 71
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP M I + ++ E +TI V N+GKGIP+ H E +++P MIF
Sbjct: 72 ADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIF---------- 121
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLLTSSNY+D+E KVTGGRNGYGAKLCNIFS++F++ET+
Sbjct: 122 ---------------GHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVG 166
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
+ + Q W++NMS P+I S K +TK+TF PDLT+F M LD D++ ++ RR YD
Sbjct: 167 QKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDI 226
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTD-----RQDEDG-------DPVKIIYENVNP 322
S +D+ V+LNG+ L ++NF++YV+LY RQ ++G D I+YE +N
Sbjct: 227 NGSVRDINVYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINN 286
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RWEVA A SD FQQ+SFVNSIATT GG HV+ + D
Sbjct: 287 RWEVAFAVSDISFQQISFVNSIATTMGGTHVNYITD------------------------ 322
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
Q+ K + +I + ++K FQ+KN+++IFINCLI NP F SQTKE
Sbjct: 323 -------------QIVKKISEILKKKKKKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQ 369
Query: 443 MTLQKGSFGSTC--------------------------------------------VPKL 458
+T + FGS C PKL
Sbjct: 370 LTTRVKDFGSRCEIPLEYINKIMKTDLATRMFEIADANEENALKKSDGTRKSRITNYPKL 429
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
EDAN AGTK CTL+LTEGDSA SLAV+GL VVGRD YG +PLRGK+LNVREA+ QI
Sbjct: 430 EDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQI 489
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNW 578
L+NAEI + KI+GLQ+ KKY ED K+LRYG LMIMTDQD DGSHIKGLIINF+ ++
Sbjct: 490 LKNAEIQAIKKIMGLQHRKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSF 546
Query: 579 PTLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P LL + FL EFITPIIK + + ++FY++P++E+W+EE ++ T+K KYYK
Sbjct: 547 PGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYYK 603
Score = 113 bits (283), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 73/113 (64%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PI+PM+LVNGAEGIGTGW T IP NP EI+ NI+ ++ E+ M PW++ +
Sbjct: 813 VEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGW 872
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G I+ R+ + G I + D+ LEITEL WT+ K+ L L G +K
Sbjct: 873 TGTIEEIEPLRYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDK 925
Score = 55.1 bits (131), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
Y+YLLGM WSLT ER +LLK++ +K TEL L K + D+W+ DL A
Sbjct: 1113 YEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAF 1162
>gi|19880894|gb|AAM00542.1|AF458973_3 TOP2 [Saccharomyces cerevisiae]
gi|256270263|gb|EEU05481.1| Top2p [Saccharomyces cerevisiae JAY291]
Length = 1428
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 308/657 (46%), Positives = 398/657 (60%), Gaps = 126/657 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEHIL RPDTYIGSVE + W+ + ET+ M + +T VPGL+KIFDEILVNA
Sbjct: 12 YQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNA 71
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP M I + ++ E +TI V N+GKGIP+ H E +++P MIF
Sbjct: 72 ADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIF---------- 121
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLLTSSNY+D+E KVTGGRNGYGAKLCNIFS++F++ET+
Sbjct: 122 ---------------GHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVG 166
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
+ + Q W++NMS P+I S K +TK+TF PDLT+F M LD D++ ++ RR YD
Sbjct: 167 QKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDI 226
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTD-----RQDEDG-------DPVKIIYENVNP 322
S +D+ V+LNG+ L ++NF++YV+LY RQ ++G D I+YE +N
Sbjct: 227 NGSVRDINVYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGTARSDIPTILYERINN 286
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RWEVA A SD FQQ+SFVNSIATT GG HV+ + D
Sbjct: 287 RWEVAFAVSDISFQQISFVNSIATTMGGTHVNYITD------------------------ 322
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
Q+ K + +I + ++K FQ+KN+++IFINCLI NP F SQTKE
Sbjct: 323 -------------QIVKKISEILKKKKKKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQ 369
Query: 443 MTLQKGSFGSTC--------------------------------------------VPKL 458
+T + FGS C PKL
Sbjct: 370 LTTRVKDFGSRCEIPLEYINKIMKTDLATRMFEIADANEENALKKSDGTRKSRITNYPKL 429
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
EDAN AGTK CTL+LTEGDSA SLAV+GL VVGRD YG +PLRGK+LNVREA+ QI
Sbjct: 430 EDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQI 489
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNW 578
L+NAEI + KI+GLQ+ KKY ED K+LRYG LMIMTDQD DGSHIKGLIINF+ ++
Sbjct: 490 LKNAEIQAIKKIMGLQHRKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSF 546
Query: 579 PTLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P LL + FL EFITPIIK + + ++FY++P++E+W+EE ++ T+K KYYK
Sbjct: 547 PGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYYK 603
Score = 113 bits (283), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 73/113 (64%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PI+PM+LVNGAEGIGTGW T IP NP EI+ NI+ ++ E+ M PW++ +
Sbjct: 813 VEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGW 872
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G I+ R+ + G I + D+ LEITEL WT+ K+ L L G +K
Sbjct: 873 TGTIEEIEPLRYRMYGRIEQIGDNILEITELPARTWTSTIKEYLLLGLSGNDK 925
Score = 54.7 bits (130), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
Y+YLLGM WSLT ER +LLK++ +K TEL L K + D+W+ DL A
Sbjct: 1113 YEYLLGMRIWSLTKERYEKLLKQKQEKETELENLLKLSAKDIWNTDLKAF 1162
>gi|19880943|gb|AAM00584.1|AF458980_3 TOP2 [Saccharomyces cerevisiae]
Length = 1428
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 308/657 (46%), Positives = 398/657 (60%), Gaps = 126/657 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEHIL RPDTYIGSVE + W+ + ET+ M + +T VPGL+KIFDEILVNA
Sbjct: 12 YQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNA 71
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP M I + ++ E +TI V N+GKGIP+ H E +++P MIF
Sbjct: 72 ADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIF---------- 121
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLLTSSNY+D+E KVTGGRNGYGAKLCNIFS++F++ET+
Sbjct: 122 ---------------GHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVG 166
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
+ + Q W++NMS P+I S K +TK+TF PDLT+F M LD D++ ++ RR YD
Sbjct: 167 QKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDI 226
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTD-----RQDEDG-------DPVKIIYENVNP 322
S +D+ V+LNG+ L ++NF++YV+LY RQ ++G D I+YE +N
Sbjct: 227 NGSVRDINVYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGTAKSDIPTILYERINN 286
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RWEVA A SD FQQ+SFVNSIATT GG HV+ + D
Sbjct: 287 RWEVAFAVSDISFQQISFVNSIATTMGGTHVNYITD------------------------ 322
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
Q+ K + +I + ++K FQ+KN+++IFINCLI NP F SQTKE
Sbjct: 323 -------------QIVKKISEILKKKKKKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQ 369
Query: 443 MTLQKGSFGSTC--------------------------------------------VPKL 458
+T + FGS C PKL
Sbjct: 370 LTTRVKDFGSRCEIPLEYINKIMKTDLATRMFEIADANEENALKKSDGTRKSRITNYPKL 429
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
EDAN AGTK CTL+LTEGDSA SLAV+GL VVGRD YG +PLRGK+LNVREA+ QI
Sbjct: 430 EDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQI 489
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNW 578
L+NAEI + KI+GLQ+ KKY ED K+LRYG LMIMTDQD DGSHIKGLIINF+ ++
Sbjct: 490 LKNAEIQAIKKIMGLQHRKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSF 546
Query: 579 PTLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P LL + FL EFITPIIK + + ++FY++P++E+W+EE ++ T+K KYYK
Sbjct: 547 PGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYYK 603
Score = 113 bits (283), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 73/113 (64%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PI+PM+LVNGAEGIGTGW T IP NP EI+ NI+ ++ E+ M PW++ +
Sbjct: 813 VEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGW 872
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G I+ R+ + G I + D+ LEITEL WT+ K+ L L G +K
Sbjct: 873 TGTIEEIEPLRYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDK 925
Score = 55.1 bits (131), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
Y+YLLGM WSLT ER +LLK++ +K TEL L K + D+W+ DL A
Sbjct: 1113 YEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAF 1162
>gi|344305515|gb|EGW35747.1| DNA topoisomerase 2 [Spathaspora passalidarum NRRL Y-27907]
Length = 1429
Score = 555 bits (1430), Expect = e-154, Method: Compositional matrix adjust.
Identities = 307/678 (45%), Positives = 402/678 (59%), Gaps = 128/678 (18%)
Query: 14 QNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHM 73
Q G GP K + + YQK SQLEHIL RPDTYIGSVE MW + E+ M
Sbjct: 53 QVGTGP---------KSNASETYQKLSQLEHILKRPDTYIGSVEKTKMEMWCFDAESESM 103
Query: 74 ERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEH 133
+ +E+T VPGLYKIFDEILVNA DNK RDP M I++ ++ E N I V N+GKGIPV H
Sbjct: 104 KFKEVTIVPGLYKIFDEILVNAADNKIRDPTMKNIRVKIDPENNVIQVMNDGKGIPVEIH 163
Query: 134 KDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGY 193
E M++P +IFG+LLTSSNYND +E KVTGGRNGY
Sbjct: 164 TKENMYIPELIFGNLLTSSNYND-------------------------DEKKVTGGRNGY 198
Query: 194 GAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITFTPDLT 252
GAKLCNIFS++F +ET+ K +KQ W +NM KV+ P+I + +K ++TKI+F PDL
Sbjct: 199 GAKLCNIFSTEFELETADLNTGKLYKQTWTNNMGKVSKPKITTLKTKKEYTKISFKPDLA 258
Query: 253 KFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD-------- 304
KF M SLD+D++ ++ RR YD + K+ ++LN ++L + NF+ Y+++Y +
Sbjct: 259 KFDMDSLDEDILAVLRRRVYDLCGTVKNCNIYLNDKRLSISNFKSYIEMYVNAIKERSPE 318
Query: 305 -RQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQ 363
+E + I++E N RWE+A A SD F QVSFVNSIATT GG HV V D I+ +
Sbjct: 319 PEGEESKNYTTIVHEVFNDRWEIAFAVSDGSFNQVSFVNSIATTSGGTHVKYVSDQIITK 378
Query: 364 IIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIW 423
++EV+ K+ K G K + ++P +V+++++
Sbjct: 379 LVEVLSKREK----------GKK-----------------------KLMIRPQEVRDNMF 405
Query: 424 IFINCLIVNPTFDSQTKENMTLQKGSFGS--TCVP------------------------- 456
IF+NCLI NP F SQTKE +T + FG VP
Sbjct: 406 IFLNCLIENPAFTSQTKEQLTTKPSQFGGKDKFVPSDNLINRILKTGIADKIRSIARANE 465
Query: 457 -------------------KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK 497
L DAN AGTK+ + CTLILTEG SA +LAV+GL VVGRD
Sbjct: 466 DKALQKADGSRKNRIKGQVNLVDANKAGTKDGLKCTLILTEGLSAMNLAVAGLSVVGRDY 525
Query: 498 YGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMT 557
YG FPLRGKLLNVREA+ QI +NAEIN L +I+GLQ+ K YT E +K+LRYG +MIMT
Sbjct: 526 YGCFPLRGKLLNVREASADQIAKNAEINALKQIIGLQHKKVYTQ-ESIKSLRYGHIMIMT 584
Query: 558 DQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFE 613
DQDQDGSHIKGLIINF+ ++P LL +P FL EFITPI+K T + + +SFY++PEFE
Sbjct: 585 DQDQDGSHIKGLIINFLETSFPGLLDIPGFLLEFITPIVKVTVKGRTKRVISFYNMPEFE 644
Query: 614 EWKEETTNWHTYKIKYYK 631
W++ + KYYK
Sbjct: 645 RWRDTEGTQCRWTQKYYK 662
Score = 126 bits (317), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 78/104 (75%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP WY+P++PM+LVNGAEGIGTGW T IP++NP++IV NI+R++ GE M PWYK +
Sbjct: 872 VEPTWYLPVLPMILVNGAEGIGTGWSTNIPSYNPKDIVANIRRLMNGEPLQEMTPWYKGW 931
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTL 763
+G+I+ G ++ V+G I +D++ +EITE+ V WT + K+ L
Sbjct: 932 EGDIEPMGPQKYKVSGRIEQVDNNTVEITEIPVKTWTNNVKEFL 975
Score = 62.0 bits (149), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 63/120 (52%), Gaps = 14/120 (11%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDA-LREKDKI--- 907
Y+YLLGMT WSLT ER +LLK+RD K ELN L K+ DLW++DL+ + E DK
Sbjct: 1177 YEYLLGMTIWSLTYERYLKLLKQRDIKEAELNELLSKSAKDLWNEDLERFMVEFDKFLIR 1236
Query: 908 ------HPCPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAPPPTKASPVKKK 961
G++ + ++ +P + + S EP+V S E P P++KK
Sbjct: 1237 DQEERESLAASGDKNKKKRTRKAPAKEPPKKKIKS--EPIVKS--EPVVTPASPKPIEKK 1292
>gi|45191011|ref|NP_985265.1| AER410Wp [Ashbya gossypii ATCC 10895]
gi|44984079|gb|AAS53089.1| AER410Wp [Ashbya gossypii ATCC 10895]
gi|374108491|gb|AEY97398.1| FAER410Wp [Ashbya gossypii FDAG1]
Length = 1427
Score = 555 bits (1429), Expect = e-154, Method: Compositional matrix adjust.
Identities = 301/660 (45%), Positives = 393/660 (59%), Gaps = 128/660 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHIL RPDTYIGSVE MW+ + E + M +++ VPGL+KIFDEI+VNA
Sbjct: 15 YQKITQLEHILKRPDTYIGSVEMQDFHMWVHDAEMDCMVEKQVNIVPGLFKIFDEIIVNA 74
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP M I++ +N+E N I V N+G GIP+ H E +++P +IFGHLLTSSNY+
Sbjct: 75 ADNKVRDPSMKKIEVVINREENYIEVKNDGNGIPIEVHAKEGIYIPELIFGHLLTSSNYD 134
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D E KVTGGRNGYGAKLCNIFS++F++ETS +
Sbjct: 135 -------------------------DNEKKVTGGRNGYGAKLCNIFSTEFILETSDPKSG 169
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
+ + Q W+ NM+ P+I S K +TKITF PDL +F M LD D++ ++ RR YD
Sbjct: 170 QKYVQKWESNMNVCHPPKITSYKKGPSYTKITFKPDLQRFGMEVLDDDILGVMRRRVYDI 229
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYT---------------DRQDEDGDPVKIIYEN 319
S +DV V LNG+ L ++NF+ Y++LY + E + I+YE
Sbjct: 230 NGSVRDVNVSLNGKSLKIRNFKSYMELYMRSLEKKRLIDSGMAPESASEKVNAPTILYEK 289
Query: 320 VNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTI 379
VN RWE+ A SD FQQ+SFVNSIATT GG HV+ + D IVK++ E++ KK K
Sbjct: 290 VNDRWELGFAVSDISFQQISFVNSIATTSGGTHVNYLTDQIVKKVSELLSKKKK------ 343
Query: 380 IMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQT 439
+KPFQ++N+I+IFINCLI NP F SQT
Sbjct: 344 --------------------------------TVKPFQIRNNIFIFINCLIENPAFTSQT 371
Query: 440 KENMTLQKGSFGSTC--------------------------------------------V 455
KE +T + FGS C
Sbjct: 372 KEQLTTRVRDFGSKCEVSSDFINKIMKTELATKIFEIADENAAKLLKQTDGTRKNRITDY 431
Query: 456 PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATH 515
PKLEDAN AGTK CTL+LTEGDSA SLAV+GL VVGRD YG FPL+GK+LNVR+A+
Sbjct: 432 PKLEDANKAGTKEGHKCTLVLTEGDSALSLAVAGLSVVGRDYYGCFPLKGKILNVRDASV 491
Query: 516 KQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIH 575
+QI +N EI + KI+GLQ+ K+Y T+EDMKTLRYG +MIMTDQD DGSHIKGL+INF
Sbjct: 492 EQIRKNTEIQAIKKIMGLQHKKQY-TIEDMKTLRYGHVMIMTDQDHDGSHIKGLLINFFE 550
Query: 576 HNWPTLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+P LL +P FL EFITPI+K T ++ + FY+LP++E+W++ ++ + +K KYYK
Sbjct: 551 STFPGLLDIPGFLIEFITPIMKVTILKPKKQVIPFYNLPDYEKWRDTESHKYVWKTKYYK 610
Score = 120 bits (301), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 76/113 (67%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+P +PMVLVNGAEGIGTGW T IP NP +IV+N+++++RG++P M PW++ +
Sbjct: 821 VEPEWYVPALPMVLVNGAEGIGTGWSTSIPPFNPIDIVNNLRKLMRGDEPDDMAPWFRGW 880
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G + R+ + G I + ++ +EITEL WTT K+ L L G E+
Sbjct: 881 NGTMQKIDAQRYRIFGRIEQVGENTVEITELPARTWTTTIKEHLLLALSGNER 933
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 16/105 (15%)
Query: 802 EEIEEVFHDNELAKPQKTGPQLERQERQAAE-----GEDDEAGSQTQEEEDPDKDYDYLL 856
E+I+E + + + P++ +L+ Q + A+ G ++ G+ Y+YLL
Sbjct: 1077 EKIDEDLEEMDASDPEEFAEELDEQGGEVADENVVVGPLEKFGT-----------YEYLL 1125
Query: 857 GMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
GM WSLT E+ LL+++ +K EL L K+ DLW+ DLD
Sbjct: 1126 GMKIWSLTKEKYERLLREKQNKEAELQELLGKSAKDLWNADLDMF 1170
>gi|410945796|pdb|4GFH|A Chain A, Topoisomerase Ii-Dna-Amppnp Complex
Length = 1103
Score = 555 bits (1429), Expect = e-154, Method: Compositional matrix adjust.
Identities = 310/632 (49%), Positives = 398/632 (62%), Gaps = 107/632 (16%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEHIL RPDTYIGSVE + W+ + ET+ M + +T VPGL+KIFDEILVNA
Sbjct: 6 YQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNA 65
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP M I + ++ E +TI V N+GKGIP+ H E +++P MIF
Sbjct: 66 ADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIF---------- 115
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLLTSSNY+D+E KVTGGRNGYGAKLCNIFS++F++ET+
Sbjct: 116 ---------------GHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVG 160
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
+ + Q W++NMS P+I S K +TK+TF PDLT+F M LD D++ ++ RR YD
Sbjct: 161 QKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDI 220
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRG 334
S +D+ V+LNG+ L ++NF++YV+LY + P I+YE +N RWEVA A SD
Sbjct: 221 NGSVRDINVYLNGKSLKIRNFKNYVELYL----KSLIPT-ILYERINNRWEVAFAVSDIS 275
Query: 335 FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNK 394
FQQ+SFVNSIATT GG HV+ + D IVK+I E++KKK K
Sbjct: 276 FQQISFVNSIATTMGGTHVNYITDQIVKKISEILKKKKK--------------------- 314
Query: 395 LQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC 454
++K FQ+KN+++IFINCLI NP F SQTKE +T + FGS C
Sbjct: 315 ----------------KSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRC 358
Query: 455 --------------------------------VPKLEDANDAGTKNSIDCTLILTEGDSA 482
PKLEDAN AGTK CTL+LTEGDSA
Sbjct: 359 EIPLEYINKIMKTDLATRMFEIADANESRITNYPKLEDANKAGTKEGYKCTLVLTEGDSA 418
Query: 483 KSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTV 542
SLAV+GL VVGRD YG +PLRGK+LNVREA+ QIL+NAEI + KI+GLQ+ KKY
Sbjct: 419 LSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKY--- 475
Query: 543 EDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKAT--- 598
ED K+LRYG LMIMTDQD DGSHIKGLIINF+ ++P LL + FL EFITPIIK +
Sbjct: 476 EDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITK 535
Query: 599 KAREELSFYSLPEFEEWKEETTNWHTYKIKYY 630
+ ++FY++P++E+W+EE ++ T+K KYY
Sbjct: 536 PTKNTIAFYNMPDYEKWREEESHKFTWKQKYY 567
Score = 113 bits (282), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 73/113 (64%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PI+PM+LVNGAEGIGTGW T IP NP EI+ NI+ ++ E+ M PW++ +
Sbjct: 775 VEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGW 834
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G I+ R+ + G I + D+ LEITEL WT+ K+ L L G +K
Sbjct: 835 TGTIEEIEPLRYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDK 887
Score = 54.7 bits (130), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
Y+YLLGM WSLT ER +LLK++ +K TEL L K + D+W+ DL A
Sbjct: 1039 YEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAF 1088
>gi|388584015|gb|EIM24316.1| DNA topoisomerase II [Wallemia sebi CBS 633.66]
Length = 1322
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 294/647 (45%), Positives = 395/647 (61%), Gaps = 115/647 (17%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEH+L RPD YIGS + W+ + ET + ++I+ VPGLYKI DEILVNA
Sbjct: 44 YQKLSQLEHVLKRPDMYIGSCMSHEDKHWVFDEETKALVEKDISIVPGLYKIMDEILVNA 103
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP+M+ +K+ +++E+N I + NNGKGIPV H EK+++P +IFG LLTSSNY
Sbjct: 104 ADNKTRDPRMDLLKVEIDRESNKIHIHNNGKGIPVEIHSKEKIYIPELIFGSLLTSSNY- 162
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
+D++ K+TGGRNG+GAKL NI+S++F VET+ SE
Sbjct: 163 ------------------------DDDDKKLTGGRNGFGAKLTNIYSTEFTVETADSEGG 198
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
K FKQ +++NM +P+I S S+ +++TKITF PDL +F M + DM L+T+R YD
Sbjct: 199 KKFKQTFRNNMGDRETPKITSNSRGEEYTKITFKPDLARFGMDKISDDMYALMTKRVYDM 258
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPV----KIIYENVNPRWEVAIA 329
A VKV+LNG +LP++NF+ YV++Y T D +G+ II+E VN RWEVA A
Sbjct: 259 AGCLPGVKVYLNGTRLPIRNFKQYVEMYVTSTIDNEGESSTKKPTIIHERVNDRWEVAFA 318
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD F++VSFVNSIATTKGG HVD V + I ++ E++KKKNK
Sbjct: 319 LSDGVFREVSFVNSIATTKGGTHVDHVTNQITTKLGEIIKKKNK---------------- 362
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G + ++KN +W+F+N +I NP FDSQTKE +TL+
Sbjct: 363 --------------------GANVTAGKMKNQMWVFVNSMIENPAFDSQTKETLTLKATQ 402
Query: 450 FGSTC--------------------------------------------VPKLEDANDAG 465
FGS C + E+AN AG
Sbjct: 403 FGSKCPLSEDFHKKVSKSGIVDNILDWAKFDADRQMAKGDTKTKKSKVSIKDYEEANKAG 462
Query: 466 TKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEIN 525
++ CTLILTEG SAK+LA+SG VVGRD YGVFPLRGKLLNVR+A+H I+ NAEI
Sbjct: 463 SREGHKCTLILTEGLSAKTLAMSGSQVVGRDYYGVFPLRGKLLNVRDASHTSIMNNAEIT 522
Query: 526 NLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP 585
++ I+GL + K+Y ++ + LRYG +MIMTDQD DGSHIKGL+IN+ H +P+LL++P
Sbjct: 523 SIKTIIGLAHKKEYKSITE---LRYGSIMIMTDQDHDGSHIKGLLINYFDHFYPSLLKIP 579
Query: 586 -FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPIIK K +E+SF+++PEFE WK E +++KYYK
Sbjct: 580 GFLVEFITPIIKLFKRNKEVSFFTIPEFEHWKAENDEGRGWRLKYYK 626
Score = 135 bits (341), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/116 (53%), Positives = 80/116 (68%), Gaps = 1/116 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+PIIPMVLVNGA+GIGTGW T IPN+NP ++V NI+R + +D PM PWY+ F
Sbjct: 836 IEPEWYVPIIPMVLVNGADGIGTGWSTTIPNYNPSDLVANIRRKLNNQDIQPMIPWYRGF 895
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYK-DTLDTLLHGAEKDE 774
G I+ + RF G I +DDDK+ ITEL V WT YK + L + G++K +
Sbjct: 896 TGNIERVSNDRFKNQGIIEQIDDDKVRITELPVRVWTVPYKEEKLKLWVQGSDKQQ 951
Score = 74.7 bits (182), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 74/148 (50%), Gaps = 15/148 (10%)
Query: 825 RQERQAAEGEDDEAGSQTQEEEDPDK--DYDYLLGMTFWSLTMERKNELLKKRDDKMTEL 882
+Q+ + GE + G +EEE+ DYDYLL M SLTMER +LLK+RD K EL
Sbjct: 1087 KQKEKKRPGEVEIIGQDEEEEENVGGAGDYDYLLSMQISSLTMERMEQLLKQRDSKEEEL 1146
Query: 883 NILKKKAPTDLWSDDLD-------ALREKD--KIHPCPGGNRTRGLALKRQTRYQPSNRV 933
N L K P DLW+ DLD AL EKD G++ +G KR + R
Sbjct: 1147 NNLAKLQPQDLWNVDLDKFMEEWEALLEKDIEDAKKVEKGSKNKGATAKRVQKAMKKKRG 1206
Query: 934 LTSRDEPMVVSSGEDAPPPTKASPVKKK 961
D+ + AP KASPVKKK
Sbjct: 1207 DDDDDDDDFSA----APKRKKASPVKKK 1230
>gi|448515221|ref|XP_003867280.1| Top2 DNA topoisomerase II [Candida orthopsilosis Co 90-125]
gi|380351619|emb|CCG21842.1| Top2 DNA topoisomerase II [Candida orthopsilosis]
Length = 1473
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 311/688 (45%), Positives = 407/688 (59%), Gaps = 130/688 (18%)
Query: 9 DPDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNR 68
D + + N + P+N + YQK SQLEHIL RPDTY+GSVE MW +
Sbjct: 71 DTSLNSSSNASTISTGKPSN---ASETYQKLSQLEHILKRPDTYVGSVEKTKMEMWCFDA 127
Query: 69 ETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGI 128
E+ M+ +E+T VPGLYKIFDEILVNA DNK RDP M IK+ ++ E N I V+N+GKGI
Sbjct: 128 ESESMKFQEVTIVPGLYKIFDEILVNAADNKIRDPSMKNIKVRIDPENNIIQVFNDGKGI 187
Query: 129 PVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTG 188
PV H EKM++P +IFG+LLTSSNY +D++ KVTG
Sbjct: 188 PVEMHTKEKMYIPELIFGNLLTSSNY-------------------------DDDQKKVTG 222
Query: 189 GRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITF 247
GRNG+GAKLCNIFS++F +ET+ K +KQ W DNM+KV P+I + +K ++TKITF
Sbjct: 223 GRNGFGAKLCNIFSTQFEIETADLNTGKLYKQTWTDNMTKVGKPKITALKTKKEYTKITF 282
Query: 248 TPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQD 307
PDL+KF M SLD+D++ ++ RR YD + K+ ++LN ++LPV +F+ YV++Y
Sbjct: 283 KPDLSKFDMDSLDEDLLSVLRRRVYDLCGTVKNCNIYLNDKRLPVTSFKSYVEMYVKAIK 342
Query: 308 E-------DGDP---VKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVV 357
E +G P I++E N RWEVA A SD F QVSFVNSIATT GG HV V
Sbjct: 343 ERSPEPEGEGAPKNYTTIVHEVFNDRWEVAFAVSDGTFNQVSFVNSIATTAGGTHVKYVS 402
Query: 358 DAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQ 417
D I+ +++E TL + +KP +
Sbjct: 403 DQIISKLVE---------------------------------TLSKKEKGKKKLMIKPNE 429
Query: 418 VKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS----------------TCVPK---- 457
V+++++IFINCLI NP F SQTKE +T + FG T + +
Sbjct: 430 VRDNMFIFINCLIENPAFTSQTKEQLTTKVSQFGGKEKFVASDNLISRVLRTGIAEKIRD 489
Query: 458 --------------------------LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLG 491
L DAN AGTK+ CTLILTEG SA +LAV+GL
Sbjct: 490 IANANEDKALQKVDGSRKSRIKGQVNLVDANKAGTKDGTKCTLILTEGLSALNLAVAGLT 549
Query: 492 VVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYG 551
V+GRD YG FPLRGKLLNVREA+ QI +NAEIN+L +I+GLQ+ K Y T E++K+LRYG
Sbjct: 550 VIGRDYYGCFPLRGKLLNVREASADQIAKNAEINSLKQIIGLQHKKAY-TAENIKSLRYG 608
Query: 552 RLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKAT----KAREELSF 606
+MIMTDQDQDGSHIKGLIINF+ ++P LL +P FL EFITPI+K T A++ + F
Sbjct: 609 HIMIMTDQDQDGSHIKGLIINFLETSFPGLLDIPGFLLEFITPIVKVTVKGRGAKKVIPF 668
Query: 607 YSLPEFEEWKE---ETTNWHTYKIKYYK 631
YS+PEFE W++ +T W KYYK
Sbjct: 669 YSMPEFEAWRDGEGQTCRWTQ---KYYK 693
Score = 117 bits (293), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 74/104 (71%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP+WY+P++PM+LVNGAEGIGTGW T IP+ +P++IV N++R++ E M PWYK +
Sbjct: 903 VEPQWYLPVLPMILVNGAEGIGTGWSTNIPSFDPKDIVVNLRRLMNNEPLEEMTPWYKGW 962
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTL 763
G I+ G ++ ++G I +D++ +EITE+ V WT K+ L
Sbjct: 963 GGFIEPMGQQKYKISGRIEQIDNNTVEITEIPVKTWTNTVKEFL 1006
Score = 57.4 bits (137), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 31/159 (19%)
Query: 841 QTQEEEDPD---KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDD 897
+ + E PD YDYLLGMT WSLT ER +LL ++ + EL IL K+ +LW+ D
Sbjct: 1191 RVEGEHKPDTIFSSYDYLLGMTIWSLTHERYVKLLNEKSNLQKELEILIGKSAVNLWNHD 1250
Query: 898 LDALRE----------KDKIHPCPGGNR----------------TRGLALKRQTRYQPS- 930
LD + +++ H GN+ + + ++R+T+ P
Sbjct: 1251 LDEFMKEYELFLAKDAEEREHLSSSGNKKKTTRKRKAVKSEAEPAKKVKVERETQATPKG 1310
Query: 931 -NRVLTSRDEPMVVSSGEDAPPPTKASPVKKKKPAAKRP 968
++ T + +P S + P T ++P K+ K P
Sbjct: 1311 VSKTCTMQAKPKSASIEPVSTPSTSSTPAPKEVTVKKEP 1349
>gi|300176867|emb|CBK25436.2| unnamed protein product [Blastocystis hominis]
Length = 1573
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 289/647 (44%), Positives = 388/647 (59%), Gaps = 110/647 (17%)
Query: 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFD 89
++VE+ YQK EH+L RPD YIGSV+ +T+ MW+ +RE + R ITYVPG YKIFD
Sbjct: 41 LTVEEKYQKLDPREHVLKRPDMYIGSVDKVTQEMWVYDREKKGLVYRNITYVPGFYKIFD 100
Query: 90 EILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
EILVNA DNK DP M+ I++ ++++ I+VWNNGKGIPVV HK+EK++VP++IFG LL
Sbjct: 101 EILVNAADNKHNDPTMDTIRVDIDRDQGRITVWNNGKGIPVVIHKEEKVYVPSLIFGLLL 160
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
T N++ D E KVTGGRNG GAKL NI+S +F VET
Sbjct: 161 TGGNFD-------------------------DNEKKVTGGRNGLGAKLTNIYSLEFSVET 195
Query: 210 SCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
+ + K FKQVW DNMS+ P IK ++TKI++ PDL F+M S+D D + L+ +
Sbjct: 196 ADKKEGKEFKQVWFDNMSRCNDPVIKKYRGKEYTKISYVPDLKLFQMDSIDDDTLGLLEK 255
Query: 270 RAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAI 328
R YD A T +KV+LNGE+L VKNF+ Y+K+Y + + K++Y N RWEV +
Sbjct: 256 RVYDIAGVTDSSLKVYLNGERLNVKNFESYIKMYQNEGATETKENKVVYCNAGERWEVGV 315
Query: 329 APSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
SD FQQVSFVNSI T+KGG+HVD + + ++ V KKK K +
Sbjct: 316 GVSDGHFQQVSFVNSICTSKGGKHVDYIAQKVSDYLLPVFKKKLKKDIKLTM-------- 367
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
VK +++IF+NC I NPTFDSQ+KE +T
Sbjct: 368 -----------------------------VKQYLYIFVNCKIENPTFDSQSKETLTKVSK 398
Query: 449 SFGST-------------C-------------------------------VPKLEDANDA 464
+GS C +PKL+DAN A
Sbjct: 399 GWGSLPVLSEQFLKKVEKCGIVDAVSVFSRFKEDQMLKKQSGKKTARKLNIPKLDDANFA 458
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
GT++S DCTLI+TEGDSAKSL V GL ++GRD YGVFPLRGK+LNVR+ + +++N EI
Sbjct: 459 GTRHSKDCTLIITEGDSAKSLVVGGLSIIGRDYYGVFPLRGKMLNVRDVSRAAVIKNEEI 518
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
+NLV+ILGL++ T +D+ +LRYG+L+IM DQD DGSHIKGL+INF WP+LL+L
Sbjct: 519 HNLVQILGLKFD---TVYDDVSSLRYGKLVIMADQDYDGSHIKGLVINFFQVFWPSLLKL 575
Query: 585 PFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL++FITPI+KATK R+ F++L +++ W + Y IKYYK
Sbjct: 576 NFLQQFITPIVKATKGRQSFMFFTLQQYKNWLQTHNEGKGYYIKYYK 622
Score = 118 bits (295), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE+Y+PIIPMVLVNGAEGIGTG+ TKIPN+NP EI + I + E P + PW++ F
Sbjct: 832 IEPEFYLPIIPMVLVNGAEGIGTGYSTKIPNYNPVEIANYIIAKLNNEKPPELHPWWRGF 891
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
G+I Y +++ G I +DD ITEL +G+WT DYK L ++
Sbjct: 892 TGDI-YKRPKGYLIRGRITKVDDLTYVITELPIGRWTQDYKQILTEMM 938
Score = 47.4 bits (111), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 817 QKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKD------------YDYLLGMTFWSLT 864
+K P ++ +++ D E Q ++EE D D Y+YLL M WSLT
Sbjct: 1073 RKYDPIYPEAKKTSSKSGDVEIAKQDEKEEGVDLDSADENLSKLLKGYNYLLSMKIWSLT 1132
Query: 865 MERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
E +EL K + ++ L+ P+ LW +DLDA
Sbjct: 1133 KELVDELKKNLETAQKKMQELQDTPPSQLWKNDLDAF 1169
>gi|342884609|gb|EGU84816.1| hypothetical protein FOXB_04711 [Fusarium oxysporum Fo5176]
Length = 1666
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 300/676 (44%), Positives = 395/676 (58%), Gaps = 133/676 (19%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
SP K P K + ++Y K SQLEHIL RPDTYIGSVE + MW++N+ET ME + ++
Sbjct: 107 SPAK--PGKKKTATEMYTKLSQLEHILKRPDTYIGSVERTEQQMWVLNKETQLMEYKNVS 164
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
+VPGLYKIFDEILVNA DNKQRD M +KI +++E ISV NNGKGIP+V H+ EK++
Sbjct: 165 FVPGLYKIFDEILVNAADNKQRDGSMTYMKINIDRENGVISVENNGKGIPIVIHEKEKIY 224
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCN 199
+P +IF GHLL SN++D+E K GGRNGYGAKLCN
Sbjct: 225 IPELIF-------------------------GHLLAGSNFDDDEKKTVGGRNGYGAKLCN 259
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKM-TS 258
+FS++F +E SE+ K +KQ W++NM + +I S DFT++TF PD +F M
Sbjct: 260 VFSTEFNLECQDSEHGKRYKQTWRNNMQTMEKAKITSSKTSDFTRVTFKPDFKRFGMEDG 319
Query: 259 LDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDGDP- 312
+D D+ L+ RR YD + + +KVFLNGE++ +K+F+ Y LY +R E+G
Sbjct: 320 IDDDLESLLHRRVYDMVGTIRGIKVFLNGEQIKIKDFKAYCDLYAKSIAKERSTEEGGAP 379
Query: 313 ---VKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVK 369
V++ + +PRWEV A SD FQQVSFVNSIATT GG HV+ + D + + +++ +
Sbjct: 380 TCTVEMDKDKSHPRWEVGFAVSDGTFQQVSFVNSIATTSGGTHVNYIADQVTEALLKALN 439
Query: 370 KKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCL 429
KK K G ALK +KNHI+IF+NC
Sbjct: 440 KKRK------------------------------------GHALKQSHLKNHIFIFVNCY 463
Query: 430 IVNPTFDSQTKENMTLQKGSFGSTCV---------------------------------- 455
I NP F SQTKE MT + FGS C
Sbjct: 464 INNPAFTSQTKEQMTTKPSQFGSKCKLGEDFLKKIAKSDALQNILDFAEKKADKMLAKGD 523
Query: 456 ---------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGK 506
KL +AN AGT+ +CTLILTEGDSAK+LAVSG ++ D+ GVFPLRGK
Sbjct: 524 GNKRSRVNNAKLVEANFAGTRRGHECTLILTEGDSAKALAVSGRAILDPDRIGVFPLRGK 583
Query: 507 LLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHI 566
LLNVR+A+ QI++NAEI N+ + LGL++ + YT D K LRYG LMIM DQD DGSHI
Sbjct: 584 LLNVRDASVDQIMKNAEIQNIKQFLGLKHKQTYT---DTKNLRYGHLMIMADQDHDGSHI 640
Query: 567 KGLIINFIHHNWPTLLRLP-FLEEFITPIIKA------TKAREELSFYSLPEFEEWKE-- 617
KGL+INF+ +P+LL++P F EFITPI+K K + SF++ PE+EEWKE
Sbjct: 641 KGLLINFLQVQFPSLLKIPDFFREFITPIVKVWQGPNPKKPQRLKSFFTQPEYEEWKEDH 700
Query: 618 --ETTNWHTYKIKYYK 631
E T WH+ KY+K
Sbjct: 701 KNELTRWHS---KYFK 713
Score = 104 bits (260), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 79/124 (63%), Gaps = 12/124 (9%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIK-RMIRGED------PL- 710
+IEP Y PIIPMVLVNGA+GIGTGW T IPN++P +IV N+K RM R +D P
Sbjct: 922 KIEPMVYAPIIPMVLVNGADGIGTGWSTSIPNYHPMDIVKNLKRRMGRLDDNDLEERPFE 981
Query: 711 PMKPWYKNFKGEIDYCGDSRFVVNGEIAILD---DDKLEITELQVGKWTTDYKDTLDTLL 767
M PW++ +KG + G R+ NG IA + D+++ ITEL + WT D+K L+ ++
Sbjct: 982 TMMPWFRGWKGTPEVAGPDRYKFNG-IAYHNEQKDNEVVITELPIRMWTDDFKGKLEKII 1040
Query: 768 HGAE 771
G +
Sbjct: 1041 AGVD 1044
Score = 50.1 bits (118), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 71/177 (40%), Gaps = 32/177 (18%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL-------- 901
+DYDYLL M WSLT ER +L + + K E + L + DLW DLD
Sbjct: 1212 RDYDYLLSMPIWSLTAERLEKLKQAIEKKKAEHDELLALSEKDLWCRDLDDFMAEWETQL 1271
Query: 902 -----------REKDKIHPCPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSG---E 947
R ++ G RG +K Y+P + R P +S +
Sbjct: 1272 AVDAEIKTSIRRLGRRVSKKIGAGTARGRKVKDDDEYEPDKK---GRGRPKAAASKATVK 1328
Query: 948 DAPPPTKASPVK-----KKKPAAKRPAPKSDSSDLSD-SDGDSDFASRKKKTAAAKK 998
AP S + KP K+ P +D +LSD SD D SR K +A A K
Sbjct: 1329 TAPKVETKSAQRFAEMFSSKPKVKK-EPSADVMELSDLSDDDYAALSRSKSSAPAIK 1384
>gi|401623896|gb|EJS41976.1| top2p [Saccharomyces arboricola H-6]
Length = 1427
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 312/657 (47%), Positives = 401/657 (61%), Gaps = 126/657 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQL+HIL RPDTYIGSVE + W+ + ET+ M + +T VPGL+KIFDEILVNA
Sbjct: 12 YQKISQLDHILKRPDTYIGSVETQEQQQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNA 71
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RD M I + +N E NTI V N+GKGIPV H E +++P +IF
Sbjct: 72 ADNKVRDLSMKRIDVNINPEENTIEVKNDGKGIPVEIHSKEGIYIPELIF---------- 121
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLLTSSNY+D+E KVTGGRNGYGAKLCNIFS++F +ET+
Sbjct: 122 ---------------GHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFTLETADLNAG 166
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
K + Q W+ NMS P+I S K +TK+TF PDL++F M SLD D++ ++ RR YD
Sbjct: 167 KKYIQKWEKNMSICNPPKITSYKKGPSYTKVTFRPDLSRFGMESLDNDILGVMRRRVYDI 226
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTD-----RQDEDGDPVK-------IIYENVNP 322
S + + V+LNG+ L ++NF++YV+LY RQ ++G I+YE +N
Sbjct: 227 NGSVRGINVYLNGKFLKIRNFKNYVELYLKSLEKKRQLDNGQDATAQTSIPTILYERINE 286
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RWEVA A SD FQQ+SFVNSIATT GG HV+ V D IV++I +++KKKNK
Sbjct: 287 RWEVAFAVSDISFQQISFVNSIATTMGGTHVNYVTDQIVRKISDLLKKKNK--------- 337
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
++KPFQ+KN+++IFINCL+ NP F SQTKE
Sbjct: 338 ----------------------------KSVKPFQIKNNMFIFINCLVENPAFTSQTKEQ 369
Query: 443 MTLQKGSFGSTC--------------------------------------------VPKL 458
+T + FGS C PKL
Sbjct: 370 LTTRVKDFGSRCEIPNEYINKIMKTDLAIKMFEIADANADNALKKSDGTRKNRITDYPKL 429
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
+DAN AGTK CTL+LTEGDSA SLAV+GL VVGRD YG +PLRGK+LNVREA+ QI
Sbjct: 430 QDANKAGTKAGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASSDQI 489
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNW 578
+NAEI + KI+GLQ+ K Y ED K+LRYG LMIMTDQD DGSHIKGLIINF+ ++
Sbjct: 490 SKNAEIQAIKKIMGLQHRKNY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSF 546
Query: 579 PTLLRLP-FLEEFITPIIKA--TKAREE-LSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P LL + FL EFITPI+K TK ++ +SFY++P++E+WK+E ++ T+K KYYK
Sbjct: 547 PGLLDIEGFLLEFITPIVKVFITKPKKNTISFYNMPDYEKWKQEESHKFTWKQKYYK 603
Score = 111 bits (277), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 72/113 (63%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PI+PMVLVNGAEGIGTGW T IP NP EIV NI+ ++ E+ M PW++ +
Sbjct: 813 VEPEWYLPILPMVLVNGAEGIGTGWSTYIPPFNPLEIVKNIRHLMNNEEMELMHPWFRGW 872
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G ++ R+ + G I + + LEITEL WT+ K+ L L G +K
Sbjct: 873 SGTMEEIEPLRYRMYGRIEQVGSNTLEITELPARTWTSTIKEYLLLGLSGNDK 925
Score = 54.7 bits (130), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 106/250 (42%), Gaps = 59/250 (23%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCP 911
Y+YLLGM WSLT ER +LLK++ +K TEL L K + D+W DL+A
Sbjct: 1113 YEYLLGMKIWSLTKERYEKLLKQKQEKETELENLLKLSAKDIWIADLEAF---------- 1162
Query: 912 GGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAPPPTKASPVKKKKPAAKRPAPK 971
YQ RD+ + G + P S K+K+ A
Sbjct: 1163 ------------DIGYQE----FLKRDKD---ARGGNVPDKGDKSKGKRKRRLA------ 1197
Query: 972 SDSSDLSDSDGDSDFASRKKKTAAAKKAKPAKKESEYSSTVCLFKR-------FGRRNCN 1024
D + D + + KKT A K+AK K E + V L ++ R
Sbjct: 1198 --------DDDEYDPSKKSKKTTAGKRAKKIKMEDIFFERVLLEQKPVTKGKGPTRIKKE 1249
Query: 1025 DGGLIPKSQREGAQDSDLENNCRLDEVERKEKEEEN-SNITKIKSKLKEKGSKKRNPLSS 1083
+ I K EGA++SD + + K++E++N S ++K+ K K+ +S+
Sbjct: 1250 NPASISKLNTEGAEESDPSSTSSSSIFDIKKEEDKNESGLSKMSDKFKK--------IST 1301
Query: 1084 LDDTMPSAAG 1093
+ D + SA+
Sbjct: 1302 IFDKVGSASA 1311
>gi|156848882|ref|XP_001647322.1| hypothetical protein Kpol_1002p113 [Vanderwaltozyma polyspora DSM
70294]
gi|156118007|gb|EDO19464.1| hypothetical protein Kpol_1002p113 [Vanderwaltozyma polyspora DSM
70294]
Length = 1404
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 309/656 (47%), Positives = 396/656 (60%), Gaps = 125/656 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEHIL RPDTYIGSVE + W+ N E +E +++ VPGL+KIFDEILVNA
Sbjct: 12 YQKISQLEHILKRPDTYIGSVEVQEQEQWIYNVENESLEEKQVKIVPGLFKIFDEILVNA 71
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP M I + +N E N I + N+GKGIP+ H EK+++P +IFGHLLTSSNY+
Sbjct: 72 ADNKVRDPSMKRIDVNINPEENLIEIKNDGKGIPIEIHDKEKIYIPELIFGHLLTSSNYD 131
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D +E KVTGGRNGYGAKLCNIFS++F++ET+
Sbjct: 132 D-------------------------DEKKVTGGRNGYGAKLCNIFSTEFILETADPSTG 166
Query: 216 KSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
K + Q W+DNM+ P+I S + +TK++F PDL +FKM LD D+V ++ RR YD
Sbjct: 167 KKYIQRWEDNMNTCHPPKITSYKNSTSYTKVSFKPDLKRFKMEKLDDDVVGVMRRRVYDI 226
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLY-----------TDRQDEDGDPVKIIYENVNPR 323
S +D+ V+L+G+ L ++NF+ YV+LY + ED I+YE VN R
Sbjct: 227 NGSVRDINVYLDGKPLKIRNFKSYVELYLKSLEKKKLTESGESTEDLQTPTILYEKVNDR 286
Query: 324 WEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLF 383
WEVA + S+ FQQVSFVNSIATT GG HV+ + D IVK++ E +KKK+K
Sbjct: 287 WEVAFSSSEASFQQVSFVNSIATTSGGTHVNYITDQIVKKVSEAIKKKSK---------- 336
Query: 384 GNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENM 443
+KPFQ+KN+++IFIN LI NP F SQTKE +
Sbjct: 337 ---------------------------KTVKPFQIKNNMFIFINSLIENPAFTSQTKEQL 369
Query: 444 TLQKGSFGSTC--------------------------------------------VPKLE 459
T + FGS C PKLE
Sbjct: 370 TTRVRDFGSKCELSNVFINKIMKTDFFDKILDVANQNDQNALKKSDGTRKIRITEYPKLE 429
Query: 460 DANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQIL 519
DAN AGTK CTLILTEGDSA S AV GL VVGRD +G +PLRGK+LNVREA+ QI
Sbjct: 430 DANKAGTKEGHKCTLILTEGDSALSQAVLGLTVVGRDYFGCYPLRGKMLNVREASADQIN 489
Query: 520 ENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWP 579
+NAEI + KI+GLQ+ KKY ED K+LRYG LMIMTDQD DGSHIKGLIINF+ ++P
Sbjct: 490 KNAEIEAIKKIMGLQHKKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLETSFP 546
Query: 580 TLLRLP-FLEEFITPIIKA--TKAREE-LSFYSLPEFEEWKEETTNWHTYKIKYYK 631
LL +P FL+EFITPIIK +K R++ + FY++P++E+W++E T+K KYYK
Sbjct: 547 GLLNIPEFLQEFITPIIKVKISKPRKQTIQFYNIPDYEKWRDEEGQNCTWKHKYYK 602
Score = 119 bits (298), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 75/113 (66%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+PIIPMVLVNGAEGIGTGW T IP+ NP +I+ NI+ ++ E M PWY+ +
Sbjct: 812 IEPEWYLPIIPMVLVNGAEGIGTGWSTNIPSFNPLDIIKNIRHLMNDEVMDEMYPWYRGW 871
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KG ++ D RF + G++ + + LEITE+ WT+ K+ L L G EK
Sbjct: 872 KGVVEKVDDHRFRLYGKVEQVGPNVLEITEVPARTWTSSIKEYLLLGLSGNEK 924
Score = 57.8 bits (138), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 58/132 (43%), Gaps = 24/132 (18%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDA----------- 900
YDYLLGM W LTMER +L ++ +K EL L K +P DLW+ DL+A
Sbjct: 1104 YDYLLGMKLWDLTMERYEKLRAQKQEKEIELETLLKLSPKDLWNTDLEAFEKEYQEFLLL 1163
Query: 901 ---LREKDKIHPCPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGED-----APPP 952
LR D I G R RG A Y PS + R + + D P
Sbjct: 1164 DEELRNGD-IPSAGKGKRKRGKA-GGDDDYDPSKKAKKPRKQTKKIKIESDFERVLIEPS 1221
Query: 953 TKASPVKKKKPA 964
TK VK K PA
Sbjct: 1222 TK---VKVKAPA 1230
>gi|146414654|ref|XP_001483297.1| hypothetical protein PGUG_04026 [Meyerozyma guilliermondii ATCC
6260]
Length = 1400
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 306/661 (46%), Positives = 394/661 (59%), Gaps = 124/661 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEHIL RPDTYIGSVE MW + T M +E+ VPGLYKIFDEILVNA
Sbjct: 59 YQKLSQLEHILKRPDTYIGSVEKTGVEMWSFDAATESMIYKEVHIVPGLYKIFDEILVNA 118
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP M IK+ ++ E NTI V N+GKGIP+ HK EK+++P +IF
Sbjct: 119 ADNKIRDPSMRNIKVNIDAENNTILVMNDGKGIPIEIHKKEKIYIPELIF---------- 168
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
G+LLTSSNY+D+E KVTGGRNGYGAKLCNIFS++FV+ET+
Sbjct: 169 ---------------GNLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFVLETADLNTS 213
Query: 216 KSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
+ +KQ W +NM+ +T P+I K SK ++TK+TF PDL+KF M LD D++ ++ RR YD
Sbjct: 214 QVYKQTWTNNMANLTKPKITKLKSKKEYTKVTFKPDLSKFHMEMLDDDILSVLRRRVYDL 273
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTDR-QDEDGDPVK----------IIYENVNPR 323
+ KD ++LN +KL ++NF+ YV++Y + ++ DPV I++E N R
Sbjct: 274 CGTVKDCNIYLNDKKLSIRNFKSYVEMYVNAIRERSPDPVAPEGETRNYSTIVHEVFNDR 333
Query: 324 WEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLF 383
WEVA A SD F QVSFVNSIATT GG HV V D I+ ++I+
Sbjct: 334 WEVAFAVSDGSFNQVSFVNSIATTSGGTHVKYVSDQIITKLIDA---------------- 377
Query: 384 GNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENM 443
L + +KP +V+N++++FINCLI NP F SQTKE +
Sbjct: 378 -----------------LTKKEKGKKKLNIKPQEVRNNMFVFINCLIENPAFTSQTKEQL 420
Query: 444 TLQKGSFGS--------------------------TCV---------------------- 455
T + FG T V
Sbjct: 421 TTRVAQFGGKPLEKIVISDQFIAKILKTSIADKIRTIVNANEDKEMLKADGSRKSRIKNQ 480
Query: 456 PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATH 515
KL DAN AGTK CTLILTEGDSA LAV+GL VVGRD YG FPLRGKLLNVREA+
Sbjct: 481 VKLVDANKAGTKEGYKCTLILTEGDSAMPLAVAGLTVVGRDYYGCFPLRGKLLNVREASI 540
Query: 516 KQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIH 575
+Q+ +NAEIN++ +I+GLQ+ K+YT E++K+LRYG +MIMTDQDQDGSHIKGLIINF+
Sbjct: 541 EQVSKNAEINSIKQIMGLQHKKRYTP-ENIKSLRYGHIMIMTDQDQDGSHIKGLIINFLE 599
Query: 576 HNWPTLLRLP-FLEEFITPIIKATKA----REELSFYSLPEFEEWKEETTNWHTYKIKYY 630
++P LL +P FL EFITPI+K T + FY++PEFE+W+E +K KY+
Sbjct: 600 TSFPGLLEIPGFLLEFITPIVKVTITGRGNHRVIPFYNMPEFEKWRETEGTTCKWKHKYF 659
Query: 631 K 631
K
Sbjct: 660 K 660
Score = 126 bits (317), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 77/104 (74%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPE Y+PIIPM+LVNGAEGIGTGW T IP+ NP +IV NI+RM+ GE+P+ M PW+K +
Sbjct: 870 VEPEAYLPIIPMLLVNGAEGIGTGWSTNIPSFNPVDIVANIRRMMNGEEPVDMTPWFKGW 929
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTL 763
+G+++ ++ V G+I +DDD +EITE+ + WT K+ L
Sbjct: 930 EGDLERISPEKYKVLGKIEQVDDDTVEITEIPIKTWTNSVKEFL 973
Score = 66.2 bits (160), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 74/158 (46%), Gaps = 12/158 (7%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCP 911
YDYLLGM WSLT ER +LL++RD+K ELN L KK+ DLW+ DLD
Sbjct: 1168 YDYLLGMAIWSLTRERYEKLLRQRDEKQEELNELLKKSAKDLWNSDLDDF--------LV 1219
Query: 912 GGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAPPPTKASPVKKKKPAAKRPAPK 971
G ++ + + P+ + ++R + E A TK+S K P K A
Sbjct: 1220 GWEEFLRADIEARNSFGPTAKT-STRKRARKSTKSEPAQKKTKSSTPKASTPTIKAEATP 1278
Query: 972 SDSSDLSDSDGDSD---FASRKKKTAAAKKAKPAKKES 1006
+ +++ D F S++ A A P K+++
Sbjct: 1279 AQPVVKEETNKQPDLLSFFSKEPSVAKTVSAAPPKRKT 1316
>gi|344231970|gb|EGV63849.1| DNA topoisomerase II [Candida tenuis ATCC 10573]
gi|344231971|gb|EGV63850.1| hypothetical protein CANTEDRAFT_104632 [Candida tenuis ATCC 10573]
Length = 1429
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 305/660 (46%), Positives = 394/660 (59%), Gaps = 123/660 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQ+ SQLEHIL RPDTYIGSVE MW + T M +E+T VPGLYKIFDEILVNA
Sbjct: 52 YQRLSQLEHILKRPDTYIGSVEKSPIEMWCFDAATEQMVFKEVTIVPGLYKIFDEILVNA 111
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP M IK+ ++ E N I V N+GKGIPV H E M++P +IFG+LLTSSNY+
Sbjct: 112 ADNKIRDPTMKNIKVKIDPENNIIEVMNDGKGIPVEIHSKENMYIPELIFGNLLTSSNYD 171
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D +E KVTGGRNGYGAKLCNIFS++F +ET+ + +
Sbjct: 172 D-------------------------DEKKVTGGRNGYGAKLCNIFSTEFQLETADASNE 206
Query: 216 KSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
KS+KQVW NMSKV P I + +K +FT++TF PDL+KF M +LD +++ ++ RR YD
Sbjct: 207 KSYKQVWSGNMSKVNKPRITALKTKKEFTRVTFKPDLSKFGMDTLDDEILSVMRRRVYDL 266
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYT---------DRQDEDGDPVKIIYENVNPRWE 325
+ KD ++LN +KL ++NF+ YV++Y +DE+ I++E N WE
Sbjct: 267 CGTVKDCNIYLNDKKLSIRNFKSYVEMYVKAIKERNPESSEDEEKKFQTIVHEVFNESWE 326
Query: 326 VAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
+A A SD F QVSFVNSIATT GG HV + DAI+ ++++ +
Sbjct: 327 IAFAVSDGTFNQVSFVNSIATTSGGTHVKFISDAIITKLVDSI----------------- 369
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTL 445
N K + K L+ ++P +V+N++++FINCLI NP F SQTKE +T
Sbjct: 370 ------NKKEKGKKKLM----------IRPQEVRNNMFLFINCLIENPAFTSQTKEQLTT 413
Query: 446 QKGSFGSTCVP------------------------------------------------K 457
+ F S K
Sbjct: 414 KSNQFHSKASDKLVISDNFITRILKTSIVDKIKSIANANEDKALQKADGSKKSRVKGQVK 473
Query: 458 LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQ 517
L DAN AGTK CTLILTEGDSA SLAV+GL V+GRD YG FPLRGKLLNVREA+ Q
Sbjct: 474 LVDANKAGTKEGHKCTLILTEGDSALSLAVAGLTVIGRDYYGCFPLRGKLLNVREASTDQ 533
Query: 518 ILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHN 577
+ +N EIN L +I+GLQ+ KKYT E++ LRYG +MIMTDQDQDGSHIKGLIINF+ +
Sbjct: 534 VSKNVEINALKQIIGLQHKKKYTP-ENVSQLRYGHIMIMTDQDQDGSHIKGLIINFLESS 592
Query: 578 WPTLLRLP-FLEEFITPIIKAT-----KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+P LL +P FL EFITPI+K T +++ LSFY++PEFE W+E +K KYYK
Sbjct: 593 FPGLLEIPGFLLEFITPIVKVTVSQRGSSKKVLSFYTMPEFENWRETEGTRCRWKQKYYK 652
Score = 130 bits (326), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 81/118 (68%), Gaps = 3/118 (2%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PIIPM+LVNGAEGIGTGW T IP +NP +IV NI++++ E+ M PWY+ +
Sbjct: 862 VEPEWYLPIIPMILVNGAEGIGTGWSTNIPCYNPEDIVANIRKLMNNEELEEMFPWYRGW 921
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDEVHP 777
+G+++ +F V+G I +DD LEITE+ V WT + K + LL G D+V P
Sbjct: 922 EGDLEIISKEKFKVSGRIEQIDDQTLEITEIPVKTWTNNVK---EFLLSGLGNDKVKP 976
Score = 64.7 bits (156), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 37/50 (74%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
+ YDYLLGM+ WSLT ER +LL++RDDK ELN L + + DLW+ DLD
Sbjct: 1164 QQYDYLLGMSLWSLTRERYEKLLRQRDDKEQELNDLLRLSAKDLWNSDLD 1213
>gi|354547146|emb|CCE43879.1| hypothetical protein CPAR2_501050 [Candida parapsilosis]
Length = 1443
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 309/685 (45%), Positives = 403/685 (58%), Gaps = 124/685 (18%)
Query: 9 DPDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNR 68
D + N + P+N + YQK SQLEHIL RPDTYIGSVE MW +
Sbjct: 38 DTSLNSFSNASTTSTGKPSN---ASETYQKLSQLEHILKRPDTYIGSVEKTKMEMWCFDA 94
Query: 69 ETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGI 128
E+ M+ +E+T VPGLYKIFDEILVNA DNK RDP M IK+ ++ E N I V+N+GKGI
Sbjct: 95 ESESMKFQEVTIVPGLYKIFDEILVNAADNKIRDPSMKNIKVRIDPENNVIQVFNDGKGI 154
Query: 129 PVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTG 188
PV H EKM++P +IFG+LLTSSNY +D++ KVTG
Sbjct: 155 PVEMHTKEKMYIPELIFGNLLTSSNY-------------------------DDDQKKVTG 189
Query: 189 GRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITF 247
GRNG+GAKLCNIFS++F VET+ K +KQ W DNM+KV P+I + +K ++TKITF
Sbjct: 190 GRNGFGAKLCNIFSTQFEVETADLNTGKLYKQTWTDNMTKVGKPKINALKTKKEYTKITF 249
Query: 248 TPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQD 307
PDL+KF M SLD+D++ ++ RR YD + K+ ++LN ++LPV +F+ YV++Y
Sbjct: 250 KPDLSKFDMDSLDEDLLSVLRRRVYDLCGTVKNCNIYLNDKRLPVTSFKSYVEMYVKAIK 309
Query: 308 E-------DGDP---VKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVV 357
E +G P I++E N RWEVA A SD F QVSFVNSIATT GG HV V
Sbjct: 310 ERSPEPEGEGAPKNYTTIVHEVFNERWEVAFAVSDGSFNQVSFVNSIATTAGGTHVKYVS 369
Query: 358 DAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQ 417
D I+ +++E TL + +KP +
Sbjct: 370 DQIITKLVE---------------------------------TLSKKEKGKKKLMIKPNE 396
Query: 418 VKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS----------------TCVP----- 456
V+++++IFINCLI NP F SQTKE +T + FG T +
Sbjct: 397 VRDNMFIFINCLIENPAFTSQTKEQLTTKVSQFGGKEKFVASDNLISRVLKTGIADKIRD 456
Query: 457 -------------------------KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLG 491
L DAN AGT++ + CTLILTEG SA +LAV+GL
Sbjct: 457 IANANEDKALQKVDGSRKSRIKGQVNLVDANKAGTRDGLKCTLILTEGLSALNLAVAGLT 516
Query: 492 VVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYG 551
V+GRD YG FPLRGKLLNVREA+ QI +NAEIN+L +I+GLQ+ K Y E++K+LRYG
Sbjct: 517 VIGRDYYGCFPLRGKLLNVREASADQIAKNAEINSLKQIIGLQHKKTY-NAENIKSLRYG 575
Query: 552 RLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKAT----KAREELSF 606
+MIMTDQDQDGSHIKGLIINF+ ++P LL +P FL EFITPI+K T A++ + F
Sbjct: 576 HIMIMTDQDQDGSHIKGLIINFLETSFPGLLDIPGFLLEFITPIVKVTVKGRGAKKIIPF 635
Query: 607 YSLPEFEEWKEETTNWHTYKIKYYK 631
YS+PEFE W++ + KYYK
Sbjct: 636 YSMPEFETWRDGEGQTCRWTQKYYK 660
Score = 122 bits (305), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 76/104 (73%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP+WY+P++PM+LVNGAEGIGTGW T IP+++P+EIV N++R++ E M PWYK +
Sbjct: 870 VEPQWYLPVLPMILVNGAEGIGTGWSTNIPSYDPKEIVANLRRLMNNEPLEEMMPWYKGW 929
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTL 763
G I+ G ++ ++G+I +DD+ +EITE+ V WT K+ L
Sbjct: 930 DGVIEPMGQQKYKISGKIEQIDDNIVEITEIPVKTWTNTVKEFL 973
Score = 58.2 bits (139), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 52/110 (47%), Gaps = 23/110 (20%)
Query: 795 IDDDSEEEEIEEVFHDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPD---KD 851
IDD+ EEEIE + + L++ E + + E PD
Sbjct: 1132 IDDNDSEEEIEN--------EGDVSALNLKKTE------------DRVEGEHKPDTIFSS 1171
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
YDYLLGMT WSLT ER +LL ++ EL IL K+ DLW+ DLD
Sbjct: 1172 YDYLLGMTIWSLTHERYVKLLNEKSSLQKELEILIGKSAIDLWNQDLDVF 1221
>gi|254570861|ref|XP_002492540.1| Essential type II topoisomerase [Komagataella pastoris GS115]
gi|238032338|emb|CAY70361.1| Essential type II topoisomerase [Komagataella pastoris GS115]
Length = 1344
Score = 551 bits (1420), Expect = e-153, Method: Compositional matrix adjust.
Identities = 313/690 (45%), Positives = 403/690 (58%), Gaps = 151/690 (21%)
Query: 12 VQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETN 71
V + NG + + + AN ++V YQK SQLEHIL RPDTYIGSVE W+ N+ET
Sbjct: 45 VNNSENGTT--RSSTANNVNVSDQYQKLSQLEHILKRPDTYIGSVEKHESEQWIYNKETE 102
Query: 72 HMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVV 131
MER+ ++ VPGL+KIFDEILVNA DNK RDP M I++T+ E N I V N+GK
Sbjct: 103 SMERKVVSIVPGLFKIFDEILVNAADNKIRDPSMKNIEVTIKPEENLIEVKNDGK----- 157
Query: 132 EHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRN 191
+IFG+LLTSSNYN D++ KVTGGRN
Sbjct: 158 ----------ELIFGNLLTSSNYN-------------------------DDQKKVTGGRN 182
Query: 192 GYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPD 250
GYGAKLCNIFS++F+VET K + Q W NM K P IKS K ++TK++F PD
Sbjct: 183 GYGAKLCNIFSTEFIVETYDKSSGKLYTQRWSQNMGKTDKPVIKSIKKATEYTKVSFRPD 242
Query: 251 LTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDG 310
L KF MT LD+D++ ++ RR +D S +D+ V LNGEKL ++NF+ YV++Y +
Sbjct: 243 LAKFNMTELDEDILGVLRRRVFDLCGSVRDISVKLNGEKLKIRNFKQYVEMYVKALEHKN 302
Query: 311 DPVK------------------IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRH 352
DP+K I+Y+ +N RWE+A A SD F QVSFVNSIATT GG H
Sbjct: 303 DPIKTEDSSLLPPPSSSSPSQTIVYQTLNDRWEIAFAVSDSTFNQVSFVNSIATTSGGTH 362
Query: 353 VDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMA 412
V+ + D IVK+I + +K KNK K +I
Sbjct: 363 VNFIADQIVKKIEKEIKTKNK-------------------------KAMI---------- 387
Query: 413 LKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS-------------------- 452
KPFQ+KN++++FINCL+ NP F SQTKE +T + FG
Sbjct: 388 -KPFQIKNNMFLFINCLVENPAFTSQTKEQLTTRASQFGGKKTEVPDDFIKKILRTGIVD 446
Query: 453 -------------------------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAV 487
T PKLEDAN AGTK CTLILTEGDSA SLAV
Sbjct: 447 AILDIAAMNADKALKKNDGSRKNRITGYPKLEDANKAGTKEGYKCTLILTEGDSASSLAV 506
Query: 488 SGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKT 547
+GL VVGRD YGV+PLRGK+LNVREA+ QI++NAEI + +I+G Q+ K YT E++ +
Sbjct: 507 AGLAVVGRDYYGVYPLRGKMLNVREASADQIMKNAEIQAIKQIMGFQHKKNYTP-ENINS 565
Query: 548 LRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKAT-----KAR 601
LRYG +MIMTDQD DGSHIKGLIINF+ ++P LL++P FL EFITPI+K T + R
Sbjct: 566 LRYGHIMIMTDQDHDGSHIKGLIINFLESSFPGLLKVPNFLLEFITPIVKVTITSGPEKR 625
Query: 602 EELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+ + FYS+PE+E W+E+ T ++K KYYK
Sbjct: 626 KVIPFYSMPEYEAWREQNT--ESFKQKYYK 653
Score = 84.7 bits (208), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 58/95 (61%)
Query: 678 EGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNFKGEIDYCGDSRFVVNGEI 737
+GIGTGW T IP NP +IV NI+R++ G++ M PWY+ + G I +F + G I
Sbjct: 848 QGIGTGWSTNIPPFNPVDIVANIRRLMDGQEMEEMIPWYRGWNGSITKISADKFRMEGNI 907
Query: 738 AILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
+DD+ +EITE+ WT + K+ L + G+EK
Sbjct: 908 EQIDDETIEITEIPAKTWTINMKEFLLNGIAGSEK 942
Score = 49.7 bits (117), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 62/153 (40%), Gaps = 40/153 (26%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCP 911
YDYLLGM WSLT ER ++LL ++ +K +L L K + +W+ DL+ E+
Sbjct: 1124 YDYLLGMPIWSLTRERYHKLLLQKAEKEDQLTELLKLSAKQIWNKDLEVFLEE------- 1176
Query: 912 GGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAPPPTKASPVKKKKPAAKRPAPK 971
DE +AS KK PAAK+ +
Sbjct: 1177 -------------------WHAFLKEDE------------EKRASSFKKSGPAAKKKRVR 1205
Query: 972 SDSSDLSDSDGDSDFASRKKKTAAAKKAKPAKK 1004
+ + + D DF S+K KT A K P K
Sbjct: 1206 RVKKE--NDENDPDFGSKKPKTVAKKVLNPKTK 1236
>gi|428169756|gb|EKX38687.1| hypothetical protein GUITHDRAFT_158481 [Guillardia theta CCMP2712]
Length = 1343
Score = 550 bits (1418), Expect = e-153, Method: Compositional matrix adjust.
Identities = 317/681 (46%), Positives = 405/681 (59%), Gaps = 124/681 (18%)
Query: 4 DESDFDPDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETM 63
D DF D ++N + S K KT VE+ YQK +QLEH+LLRPDTYIGS E +
Sbjct: 3 DSDDFFQD-KENVSTTSKKSKT------VEETYQKLTQLEHVLLRPDTYIGSTEMHRTKL 55
Query: 64 WLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWN 123
W+ + E M +RE+TYVPGL+KIFDEILVNA DNKQRD M+ +K+ ++ E ++ISV+N
Sbjct: 56 WVFDEEIG-MNQREVTYVPGLFKIFDEILVNAADNKQRDKTMDTLKVVIDPEESSISVYN 114
Query: 124 NGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEE 183
NG GIPV HK+E +VP +IFGHLLTSSNYN D+E
Sbjct: 115 NGCGIPVEMHKEENCWVPELIFGHLLTSSNYN-------------------------DKE 149
Query: 184 DKVTGGRNGYGAKLCNIFSSKFVVETS-CSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DD 241
K TGGRNGYGAKL NIFS++F VET+ S + +KQ W DNM T +K + D+
Sbjct: 150 KKTTGGRNGYGAKLANIFSTEFTVETADGSRSGRKYKQTWTDNMQNKTKATVKECKESDN 209
Query: 242 FTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKL 301
+T ITF PDL+KF M LD D V L+ +R YD A + VKVFL +++ +K F+DY KL
Sbjct: 210 WTCITFKPDLSKFGMVHLDVDTVALMKKRVYDMAGTIPGVKVFLKDQRIKIKTFEDYCKL 269
Query: 302 YTDRQDEDGD-PVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAI 360
Y + K ++ N RWE+ IA SD FQQVSFVN+IATT+GG HV+ V D +
Sbjct: 270 YLSSSSVLLEGEAKYVHYKPNDRWEMVIAASDGQFQQVSFVNNIATTRGGSHVNHVADQL 329
Query: 361 VKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKN 420
V+ + + KK+K + LKPFQ+K
Sbjct: 330 VQMFSDHLGKKHKG------------------------------------LKLKPFQIKG 353
Query: 421 HIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC-------------------------- 454
H+WIF+N LI NP FDSQTKE +TL+ +FGS
Sbjct: 354 HMWIFLNSLIENPAFDSQTKETLTLKPSAFGSKAEFDDKFFKKMLNGTKIIDGILSFGQE 413
Query: 455 -------------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGR 495
+PKLEDANDAGTK++ DCTLILTEGDSAK+LAVSGL VVGR
Sbjct: 414 KQEKDMKKTDGKKTGRIVGIPKLEDANDAGTKHAADCTLILTEGDSAKALAVSGLAVVGR 473
Query: 496 DKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMI 555
++YGVFPLRGK+ N R+A H+QI++N EI NL ILGLQ KY + LRYG +MI
Sbjct: 474 NRYGVFPLRGKVANPRDANHEQIMKNEEIKNLKTILGLQQGNKYEN--GPQGLRYGHVMI 531
Query: 556 MTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPII---KATKAREELSFYSLPE 611
M DQD DGSHIKGL+IN H+ WP LLR P FL+EF TPI+ K + E++F++L E
Sbjct: 532 MADQDPDGSHIKGLLINLFHYYWPNLLRHPGFLQEFATPIVKAKKKGGGKNEIAFFTLQE 591
Query: 612 FEEWKEETTN-WHTYKIKYYK 631
+EEW+E+ + + IKYYK
Sbjct: 592 YEEWREQVGDGLGGWTIKYYK 612
Score = 120 bits (302), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 78/112 (69%), Gaps = 4/112 (3%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP++Y+PI+P VLVNGA GIGTGW T +P +NPR++V N+KR++R E PM PW++ F
Sbjct: 822 IEPQFYVPILPTVLVNGAHGIGTGWSTDVPCYNPRDVVSNLKRLLRQEVMEPMHPWFRGF 881
Query: 720 KGEIDYC----GDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
+G ++ G+ + + G+ +D+ L I EL VGKWT YK+ L+TL+
Sbjct: 882 QGSVELNVSKKGEVSYTLVGKWEKVDETTLVINELPVGKWTQQYKEFLETLM 933
Score = 53.1 bits (126), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 31/50 (62%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
YDYLL M SLT+ER L ++RD K EL L K P DLW DLD++
Sbjct: 1108 YDYLLNMPILSLTLERVKHLQEERDGKANELEELNKLTPADLWERDLDSI 1157
>gi|453086165|gb|EMF14207.1| type II DNA topoisomerase [Mycosphaerella populorum SO2202]
Length = 1718
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 301/652 (46%), Positives = 396/652 (60%), Gaps = 119/652 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHIL RPDTYIGSVE TE +W+ N ET+ ME R+++YVPGLYKIFDEILVNA
Sbjct: 144 YQKLTQLEHILKRPDTYIGSVEYTTELLWIYNSETDCMENRKVSYVPGLYKIFDEILVNA 203
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQRD M+ +++TV+ E ISV NNG+GIPV H E +++P MIFGHLLTSSNY+
Sbjct: 204 ADNKQRDKNMSELRVTVDAEKGEISVKNNGRGIPVEMHDKEGIWIPEMIFGHLLTSSNYD 263
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D +E KVTGGRNGYGAKL NI+S++F +ET S+ K
Sbjct: 264 D-------------------------DEAKVTGGRNGYGAKLTNIYSTEFKLETVDSKTK 298
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
+ + Q W+ NMS + +I DD+T+ITF PD +KF M +D D L+ RR YD A
Sbjct: 299 QKYSQTWRKNMSIMEKAKITKVKGDDYTEITFKPDFSKFGMDKMDADFEGLVKRRVYDMA 358
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYT------DRQDEDGDPVKIIY-ENVNPRWEVAI 328
+ K VKV+LNGE++ + F+ Y+++YT + ++ P ++I +N + RWE+
Sbjct: 359 GTAKGVKVYLNGERIKITKFKQYMEMYTKAIKTENVANDGAAPEQVILTDNPHERWEIGF 418
Query: 329 APSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
A SD FQQVSFVNSIATT GG HV+ + D I ++ ++V KKNK
Sbjct: 419 AVSDGSFQQVSFVNSIATTNGGTHVNYIADQICDRLEQIVNKKNK--------------- 463
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
GG+ LK Q++NHI++F+N LIVNP F SQTKE +T +
Sbjct: 464 --------------------GGVKLKKAQLRNHIFLFVNALIVNPAFTSQTKEQLTTKVS 503
Query: 449 SFGS--------------TCV-----------------------------PKLEDANDAG 465
+FGS T V KL DAN AG
Sbjct: 504 AFGSKPQVTEKFLKAIANTEVVTNILHFAQQKADKVLSKSDGNRRQRMNHSKLTDANKAG 563
Query: 466 TKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEIN 525
TK+ CTLILTEGDSA LA++G VV D +GVFPLRGK+LNVR+A+ QI +NAEI
Sbjct: 564 TKDGHMCTLILTEGDSAALLALAGRAVVNPDLFGVFPLRGKVLNVRDASVDQISKNAEIQ 623
Query: 526 NLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP 585
N+ K +GLQ+ K+YT D K LRYG +MIMTDQD DGSHIKGL+INF+ +P+LLRL
Sbjct: 624 NIKKFIGLQHKKQYT---DTKGLRYGHIMIMTDQDHDGSHIKGLLINFLQVQYPSLLRLK 680
Query: 586 -FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K + + F+++PE+E+W+E+ + ++ KYYK
Sbjct: 681 GFLLEFITPIVKVWKGDPKKPKAKHDFFTMPEYEKWREQPGHIKGWEHKYYK 732
Score = 116 bits (290), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 78/117 (66%), Gaps = 5/117 (4%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDN-IKRMIRG---EDPLPMKPW 715
IEPE Y PI+PM+L+NGAEGIGTGW T IP HNP ++++N I RM G E PM PW
Sbjct: 943 IEPELYFPIVPMILINGAEGIGTGWSTSIPCHNPDDVINNLIARMQPGATKESMTPMLPW 1002
Query: 716 YKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
Y+ + G+ + + R+ G IA + ++EITEL V +WT D+K+ L+ ++ AEK
Sbjct: 1003 YRGWTGQTEQLSEERYKFPGRIAKTGNSEVEITELPVHQWTQDFKEKLEDIIK-AEK 1058
Score = 64.3 bits (155), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPC 910
D+DYLLGM WSLT ER ++L+K+ DK E++ L +K+ DLW DL ALRE
Sbjct: 1227 DFDYLLGMAIWSLTQERVDKLIKQVGDKEEEIDDLTRKSVQDLWQSDLQALRE--SWQNA 1284
Query: 911 PGGNRTRGLALKRQTR 926
R R +KR+ R
Sbjct: 1285 ENEERKRDKDIKRKGR 1300
>gi|452844784|gb|EME46718.1| hypothetical protein DOTSEDRAFT_87208 [Dothistroma septosporum
NZE10]
Length = 1714
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 302/653 (46%), Positives = 390/653 (59%), Gaps = 120/653 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHIL RPDTYIGSVE TE +W+ N ET ME R++TYVPGLYKIFDEILVNA
Sbjct: 141 YQKLTQLEHILKRPDTYIGSVEQTTEQLWIYNSETESMENRKVTYVPGLYKIFDEILVNA 200
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQRD M+ +++ ++ E ISV NNGKGIP+ H+ E +++P MIFGHLLTSSNY+
Sbjct: 201 ADNKQRDKNMDELRVWIHPEKGVISVKNNGKGIPIEMHEKEGIYIPEMIFGHLLTSSNYD 260
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
DEE K TGGRNGYGAKL NI+S++F ++T + K
Sbjct: 261 -------------------------DEEAKTTGGRNGYGAKLTNIYSTEFQLDTVDRKTK 295
Query: 216 KSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
+ ++Q W++NMS + +I K D+T+ITF PD KFKM +D D L+ RR YD
Sbjct: 296 QRYRQTWRNNMSTMEKAKIEKVKDTQDYTQITFKPDFRKFKMDGMDADFEGLVKRRVYDM 355
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDGD-PVKIIY-ENVNPRWEVA 327
A + K VKV+LNGE++ + F+ Y+++YT + DG P ++I ++ + RWE+
Sbjct: 356 AGTAKGVKVYLNGERIKIAKFKQYMEMYTKAIKNENLANDGTAPEQVILTDSPHERWEIG 415
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
A SD FQQVSFVNSIATT GG HV+ + + I ++ V KKNK
Sbjct: 416 FAVSDGSFQQVSFVNSIATTSGGTHVNYIAEQICDKLEAHVNKKNK-------------- 461
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+ LK Q+KNHI++F+NCLIVNP F SQTKE +T +
Sbjct: 462 ---------------------GGVKLKKAQIKNHIFLFVNCLIVNPAFTSQTKEQLTTKV 500
Query: 448 GSFGSTCV-------------------------------------------PKLEDANDA 464
+FGS KL DAN A
Sbjct: 501 SAFGSKPTVSEKFLKDILKTEAVTNIIHFAQQKADKVLAKSDGNRRQRMNNSKLTDANKA 560
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
GTK+ CTLILTEGDSA LA++G VV D +GVFPLRGK+LNVR+A+ QI +NAEI
Sbjct: 561 GTKDGHKCTLILTEGDSAALLALAGRAVVNPDLFGVFPLRGKILNVRDASIDQISKNAEI 620
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
N+ K LGLQ+ K YT D K LRYG LMIMTDQD DGSHIKGL+INF+ +P+LLR+
Sbjct: 621 QNIKKFLGLQHKKDYT---DTKGLRYGHLMIMTDQDHDGSHIKGLLINFLQVQYPSLLRI 677
Query: 585 P-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P FL EFITPI+K K +++ F+++PE+E W+E N + KYYK
Sbjct: 678 PGFLMEFITPIVKVWKGDVKNPKQKRDFFTMPEYEAWRELPGNSKGWDHKYYK 730
Score = 115 bits (289), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 78/115 (67%), Gaps = 3/115 (2%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRG--EDPLPMKPWYK 717
IEPE Y+PI+PM+L+NGA+GIGTGW T +PN+ P +++ N+ R + G + +PM+PW++
Sbjct: 941 IEPEMYVPILPMILINGADGIGTGWSTTVPNYRPEDVIANLIRRMDGNKDSMIPMQPWFR 1000
Query: 718 NFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
+ GE + GD RF I + ++++TEL V WT D+K+ L+ +L AEK
Sbjct: 1001 GWTGETEQLGDERFKFGAAIRKTGEGEVQVTELPVRYWTQDFKEKLEDILK-AEK 1054
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 33/53 (62%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
DYDYLLGM WSLT ER +L ++ DK E+ L K+ DLW DL AL E
Sbjct: 1223 DYDYLLGMAIWSLTQERVEKLNRQIGDKENEITELTAKSSKDLWRTDLAALEE 1275
>gi|67538472|ref|XP_663010.1| hypothetical protein AN5406.2 [Aspergillus nidulans FGSC A4]
gi|40743376|gb|EAA62566.1| hypothetical protein AN5406.2 [Aspergillus nidulans FGSC A4]
gi|259485149|tpe|CBF81963.1| TPA: DNA topoisomerase 2 (EC 5.99.1.3)
[Source:UniProtKB/TrEMBL;Acc:O59864] [Aspergillus
nidulans FGSC A4]
Length = 1709
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 292/650 (44%), Positives = 388/650 (59%), Gaps = 117/650 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK + EHI +RPD+YIGSVE T+ MW+ N E + ME RE++YVPGLYKIFDEI+VNA
Sbjct: 120 YQKLNLREHITIRPDSYIGSVERTTQEMWVYNSEIDGMEFREVSYVPGLYKIFDEIVVNA 179
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQ D M+ I++T ++ETN ISVWNNGKGIPV H++ M++P +IFG+LLTSSNY
Sbjct: 180 ADNKQNDDNMDEIRVTYSRETNEISVWNNGKGIPVEMHEEHGMYIPQLIFGNLLTSSNY- 238
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
+D ++K+TGGRNG+GAKLCN+FS++F VET S+ K
Sbjct: 239 ------------------------DDAKEKITGGRNGFGAKLCNVFSTEFTVETQDSKQK 274
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K + Q W DNM V P+I + DFT++TF D +F M +D D LI RR YD A
Sbjct: 275 KRYLQTWTDNMQTVGKPKITAAKGSDFTRVTFKADFPRFGMDGIDDDFEALIKRRVYDLA 334
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDGDPVKIIYENVNPRWEVAIAP 330
+T V V LNG +LPV+NF+ Y+++YT +R D+D II + +P WE+ A
Sbjct: 335 GTTG-VTVKLNGTRLPVRNFKKYMEMYTKAIRRERGDDDSKSDPIITCSPHPYWEIGFAV 393
Query: 331 SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNV 390
SD F+QVSFVNSIATT GG HV+ + D I ++ E +KK K G
Sbjct: 394 SDGSFKQVSFVNSIATTSGGTHVNYIADQIAGKLSESLKKNKKGTGSI------------ 441
Query: 391 KNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSF 450
LKP Q++N+ ++F+N IVNP F SQTKE +T ++ F
Sbjct: 442 ----------------------LKPAQIRNYCFLFVNAKIVNPAFSSQTKEQLTTKQTQF 479
Query: 451 GSTCV-------------------------------------------PKLEDANDAGTK 467
GS + PKL DAN AGTK
Sbjct: 480 GSKPILDESFLKKVANSGVLDSLKRFADHKADLMLKKSDGGRRSRMNNPKLTDANRAGTK 539
Query: 468 NSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNL 527
+ CTLILTEG+SAK LA++G VVG D +GV+PLRGK+LNVR+A+ QI +N EI ++
Sbjct: 540 DGYKCTLILTEGESAKGLAMAGRAVVGADLFGVYPLRGKMLNVRDASFDQISKNEEIQSI 599
Query: 528 VKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-F 586
+GLQ+ K+YT D K LRYG LMIMTDQD DGSHIKGL+INF+ +P+LL++P F
Sbjct: 600 KNFMGLQHKKEYT---DTKGLRYGHLMIMTDQDHDGSHIKGLLINFLEAQFPSLLKIPEF 656
Query: 587 LEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
L EFITPI+K K ++ SF+++ E+ WKE+ + ++ KYYK
Sbjct: 657 LIEFITPIVKVWKGDIKDPTKQHSFFTIQEYNAWKEKHGHERGWEHKYYK 706
Score = 137 bits (345), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 81/108 (75%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP Y+P++PM+L+NGA+GIGTGW T IPN+NP +IVDN+KRMIRGE+ PM+PW+K F
Sbjct: 916 IEPWVYVPVVPMILINGADGIGTGWSTSIPNYNPEDIVDNLKRMIRGEEIKPMQPWFKGF 975
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
KGE+ G ++ +G I + D +LE+TEL + WT D+ + L+ ++
Sbjct: 976 KGEVTQLGPDKYKFSGLIKQVSDKELEVTELPIRTWTQDFINKLEEMI 1023
Score = 53.9 bits (128), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 829 QAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKK 888
+A+E ED EA TQ D +DYLLGM WSLT ER +L ++ +K E++ L K
Sbjct: 1181 EASEDEDTEAQDDTQ---DLAHAFDYLLGMAIWSLTQERVEKLRRQIGEKEHEIDELIKL 1237
Query: 889 APTDLWSDDLDALREKDKIHPCPGGNRTRG 918
+ D+W DLD + + R RG
Sbjct: 1238 SSEDIWLRDLDEFINEWRFQLSETDRRRRG 1267
>gi|55773630|dbj|BAA28664.2| typeII DNA topoisomerase [Emericella nidulans]
Length = 1709
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 292/650 (44%), Positives = 388/650 (59%), Gaps = 117/650 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK + EHI +RPD+YIGSVE T+ MW+ N E + ME RE++YVPGLYKIFDEI+VNA
Sbjct: 120 YQKLNLREHITIRPDSYIGSVERTTQEMWVYNSEIDGMEFREVSYVPGLYKIFDEIVVNA 179
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQ D M+ I++T ++ETN ISVWNNGKGIPV H++ M++P +IFG+LLTSSNY
Sbjct: 180 ADNKQNDDNMDEIRVTYSRETNEISVWNNGKGIPVEMHEEHGMYIPQLIFGNLLTSSNY- 238
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
+D ++K+TGGRNG+GAKLCN+FS++F VET S+ K
Sbjct: 239 ------------------------DDAKEKITGGRNGFGAKLCNVFSTEFTVETQDSKQK 274
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K + Q W DNM V P+I + DFT++TF D +F M +D D LI RR YD A
Sbjct: 275 KRYLQTWTDNMQTVGKPKITAAKGSDFTRVTFKADFPRFGMDGIDDDFEALIKRRVYDLA 334
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDGDPVKIIYENVNPRWEVAIAP 330
+T V V LNG +LPV+NF+ Y+++YT +R D+D II + +P WE+ A
Sbjct: 335 GTTG-VTVKLNGTRLPVRNFKKYMEMYTKAIRRERGDDDSKSDPIITCSPHPYWEIGFAV 393
Query: 331 SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNV 390
SD F+QVSFVNSIATT GG HV+ + D I ++ E +KK K G
Sbjct: 394 SDGSFKQVSFVNSIATTSGGTHVNYIADQIAGKLSESLKKNKKGTGSI------------ 441
Query: 391 KNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSF 450
LKP Q++N+ ++F+N IVNP F SQTKE +T ++ F
Sbjct: 442 ----------------------LKPAQIRNYCFLFVNAKIVNPAFSSQTKEQLTTKQTQF 479
Query: 451 GSTCV-------------------------------------------PKLEDANDAGTK 467
GS + PKL DAN AGTK
Sbjct: 480 GSKPILDESFLKKVANSGVLDSLKRFADHKADLMLKKSDGGRRSRMNNPKLTDANRAGTK 539
Query: 468 NSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNL 527
+ CTLILTEG+SAK LA++G VVG D +GV+PLRGK+LNVR+A+ QI +N EI ++
Sbjct: 540 DGYKCTLILTEGESAKGLAMAGRAVVGADLFGVYPLRGKMLNVRDASFDQISKNEEIQSI 599
Query: 528 VKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-F 586
+GLQ+ K+YT D K LRYG LMIMTDQD DGSHIKGL+INF+ +P+LL++P F
Sbjct: 600 KNFMGLQHKKEYT---DTKGLRYGHLMIMTDQDHDGSHIKGLLINFLEAQFPSLLKIPEF 656
Query: 587 LEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
L EFITPI+K K ++ SF+++ E+ WKE+ + ++ KYYK
Sbjct: 657 LIEFITPIVKVWKGDIKDPTKQHSFFTIQEYNAWKEKHGHERGWEHKYYK 706
Score = 137 bits (345), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 81/108 (75%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP Y+P++PM+L+NGA+GIGTGW T IPN+NP +IVDN+KRMIRGE+ PM+PW+K F
Sbjct: 916 IEPWVYVPVVPMILINGADGIGTGWSTSIPNYNPEDIVDNLKRMIRGEEIKPMQPWFKGF 975
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
KGE+ G ++ +G I + D +LE+TEL + WT D+ + L+ ++
Sbjct: 976 KGEVTQLGPDKYKFSGLIKQVSDKELEVTELPIRTWTQDFINKLEEMI 1023
Score = 53.9 bits (128), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 829 QAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKK 888
+A+E ED EA TQ D +DYLLGM WSLT ER +L ++ +K E++ L K
Sbjct: 1181 EASEDEDTEAQDDTQ---DLAHAFDYLLGMAIWSLTQERVEKLRRQIGEKEHEIDELIKL 1237
Query: 889 APTDLWSDDLDALREKDKIHPCPGGNRTRG 918
+ D+W DLD + + R RG
Sbjct: 1238 SSEDIWLRDLDEFINEWRFQLSETDRRRRG 1267
>gi|310795452|gb|EFQ30913.1| topoisomerase IV [Glomerella graminicola M1.001]
Length = 1779
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 304/676 (44%), Positives = 390/676 (57%), Gaps = 134/676 (19%)
Query: 19 PSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREI 78
P+P P +K + YQK +QLEHI+ RPDTYIGSVEP + MW+ N+ETN ME R++
Sbjct: 109 PAP---GPKSKKTATDTYQKLTQLEHIIKRPDTYIGSVEPTEQPMWVFNKETNLMEYRKV 165
Query: 79 TYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKM 138
TYVPGLYKIFDEILVNA DNKQRD M +KI+V++E I+V NNGKGIPV H EK+
Sbjct: 166 TYVPGLYKIFDEILVNAADNKQRDATMTYMKISVDREAGEITVENNGKGIPVEIHGKEKI 225
Query: 139 FVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLC 198
++P MIFGHLLT SNY +D+E K GGRNGYGAKLC
Sbjct: 226 YIPEMIFGHLLTGSNY-------------------------DDDEKKTVGGRNGYGAKLC 260
Query: 199 NIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTS 258
N+FS +F +E S K +KQ+W DNMSK +I S DF ++TF PD +F MT
Sbjct: 261 NVFSEQFTLECQDSNNGKRYKQIWTDNMSKCGKAKITSSKTSDFVRVTFKPDFKRFSMTG 320
Query: 259 LDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDGDPV 313
+D D+ LI RR YD A + + +KV LNG + + F+ Y ++Y +R E+G
Sbjct: 321 IDDDLEALIYRRVYDMAGTVRGIKVHLNGTHIKLA-FKGYCEMYAKAIAKERGAEEGVEP 379
Query: 314 KIIYE----NVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVK 369
K++ E + +PRWE+A SD FQQVSFVNSIATT GG HV+ + D I +++ +
Sbjct: 380 KVVVEVDKTDAHPRWEIAFTVSDGTFQQVSFVNSIATTSGGTHVNYIADQITGSLLKTLD 439
Query: 370 KKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCL 429
KK K G ALK ++NHI+IF+NCL
Sbjct: 440 KKKK------------------------------------GHALKQNHIRNHIFIFVNCL 463
Query: 430 IVNPTFDSQTKENMTLQKGSFGSTCV---------------------------------- 455
+ NP F SQTKE MT + FGS C
Sbjct: 464 VNNPAFTSQTKEQMTTKVSQFGSKCALTEEFLKKIAKSDAIQNIIDFAEKKADKMMAKSD 523
Query: 456 ---------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGK 506
KL DAN AGT++ +CTLILTEGDSAKSLAV+G ++ D+ GVFPLRGK
Sbjct: 524 GNKRSRISNSKLVDANLAGTRHGHECTLILTEGDSAKSLAVAGRAILDPDRIGVFPLRGK 583
Query: 507 LLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHI 566
+LNVR+A+ QI +N EI N+ + LGL++ + YT D K+LRYG LMIM DQD DGSHI
Sbjct: 584 MLNVRDASIDQITKNQEIQNIKQFLGLKHKQTYT---DTKSLRYGHLMIMADQDHDGSHI 640
Query: 567 KGLIINFIHHNWPTLLRLP-FLEEFITPIIKA------TKAREELSFYSLPEFEEWKE-- 617
KGL+INF+ +P+LL++P F EFITPI+K K SF++ P++EEWKE
Sbjct: 641 KGLLINFLQVQYPSLLQIPDFFREFITPIVKVWQGPNPKKPLRLKSFFTQPQYEEWKEGH 700
Query: 618 --ETTNWHTYKIKYYK 631
E WH KYYK
Sbjct: 701 RSELARWH---YKYYK 713
Score = 104 bits (259), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 75/121 (61%), Gaps = 11/121 (9%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP--------L 710
RIEP+ Y PIIPM+L NGA+GIGTGW T IPN++P +IV+N+KR + DP
Sbjct: 922 RIEPKVYAPIIPMILCNGADGIGTGWSTSIPNYHPIDIVNNLKRRMGRLDPSNPEDAAFQ 981
Query: 711 PMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLE--ITELQVGKWTTDYKDTLDTLLH 768
PM PW++ +KG + R+ NG I +D+ E +TEL + WT D+K L+ ++
Sbjct: 982 PMMPWFRGWKGTPEQSEKDRYKFNG-ICEIDERTGEVIVTELPIRMWTDDFKAKLEEVIS 1040
Query: 769 G 769
G
Sbjct: 1041 G 1041
Score = 44.3 bits (103), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
YDYLL M WSLT ER L ++ ++K E + L DLW DLD
Sbjct: 1213 YDYLLSMPIWSLTYERLERLERQIENKKAEHDALLALGEKDLWIQDLD 1260
>gi|172998|gb|AAB36610.1| topoisomerase II [Saccharomyces cerevisiae]
Length = 1429
Score = 548 bits (1411), Expect = e-152, Method: Compositional matrix adjust.
Identities = 307/658 (46%), Positives = 397/658 (60%), Gaps = 127/658 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEHIL RPDTYIGSVE + W+ + ET+ M + +T VPGL+KIFDEILVNA
Sbjct: 12 YQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNA 71
Query: 96 CDN-KQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
DN K RDP M I + ++ E +TI V N+GKGIP+ H E +++P MIF
Sbjct: 72 ADNNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIF--------- 122
Query: 155 NDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEY 214
GHLLTSSNY+D+E KVTGGRNGYGAKLCNIFS++F++ET+
Sbjct: 123 ----------------GHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNV 166
Query: 215 KKSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYD 273
+ + Q W++NMS P+I S K +TK+TF PDLT+F M LD D++ ++ RR YD
Sbjct: 167 GQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYD 226
Query: 274 AAASTKDVKVFLNGEKLPVKNFQDYVKLYTD-----RQDEDG-------DPVKIIYENVN 321
S +D+ V+LNG+ L ++NF++YV+LY RQ ++G D I+YE +N
Sbjct: 227 INGSVRDINVYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERIN 286
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RWEVA A SD FQQ+SFVNSIATT GG HV+ + D
Sbjct: 287 NRWEVAFAVSDISFQQISFVNSIATTMGGTHVNYITD----------------------- 323
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
Q+ K + +I + ++K FQ+KN+++IFINCLI NP F SQTKE
Sbjct: 324 --------------QIVKKISEILKKKKKKSVKSFQIKNNMFIFINCLIENPAFTSQTKE 369
Query: 442 NMTLQKGSFGSTC--------------------------------------------VPK 457
+T + FGS C PK
Sbjct: 370 QLTTRVKDFGSRCEIPLEYINKIMKTDLATRMFEIADANEENALKKSDGTRKSRITNYPK 429
Query: 458 LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQ 517
LEDAN AGTK CTL+LTEGDSA SLAV+GL VVGRD YG +PLRGK+LNVREA+ Q
Sbjct: 430 LEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQ 489
Query: 518 ILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHN 577
IL+NAEI + KI+GLQ+ KKY ED K+LRYG LMIMTDQD DGSHIKGLIINF+ +
Sbjct: 490 ILKNAEIQAIKKIMGLQHRKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESS 546
Query: 578 WPTLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+ LL + FL EFITPIIK + + ++FY++P++E+W+EE ++ T+K KYYK
Sbjct: 547 FLGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYYK 604
Score = 108 bits (269), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 72/113 (63%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PI+PM+LVNGAEGIGTG T IP NP EI+ NI+ ++ E+ M PW++ +
Sbjct: 814 VEPEWYLPILPMILVNGAEGIGTGRSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGW 873
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G I+ R+ + G I + D+ LEITEL WT+ K+ L L G +K
Sbjct: 874 TGTIEEIEPLRYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDK 926
Score = 55.1 bits (131), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
Y+YLLGM WSLT ER +LLK++ +K TEL L K + D+W+ DL A
Sbjct: 1114 YEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAF 1163
>gi|18369818|dbj|BAB84104.1| DNA topoisomerase II [Penicillium citrinum]
Length = 1100
Score = 548 bits (1411), Expect = e-152, Method: Compositional matrix adjust.
Identities = 296/652 (45%), Positives = 388/652 (59%), Gaps = 119/652 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHI+ RPDTYIGS+E + MW+ N ET ME R +++VPGLYKIFDEI+VNA
Sbjct: 4 YQKLTQLEHIVKRPDTYIGSIEMTQQQMWVFNSETESMEFRNVSFVPGLYKIFDEIVVNA 63
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQ D M+ I++T+++E ISVWNNG+GIP+ H EK++VP +IFG+LLTSSNY
Sbjct: 64 ADNKQNDKSMSEIRVTIDREKGEISVWNNGRGIPIEIHSKEKIYVPELIFGNLLTSSNY- 122
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
+D + KVTGGRNG+GAKLCN+FS++F +ET S K
Sbjct: 123 ------------------------DDNQKKVTGGRNGFGAKLCNVFSTEFTLETQDSNQK 158
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
K +KQ W +NM+K+ +I SK +D+T +TF PD KF M +D D L+
Sbjct: 159 KKYKQTWTENMTKMGKAKITDASKGEDYTMVTFKPDFAKFGMEGIDDDFEALVKLLVVYD 218
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTD---RQDEDGDPV---KIIYENVNPRWEVAI 328
A T V V LN ++P++NF+ Y+++YT R+ D P +I+ + +PRWE+
Sbjct: 219 LAGTAGVTVKLNKTRVPIRNFKQYMQMYTKAIRRERGDDGPAPKDEILTCSPDPRWEIGF 278
Query: 329 APSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
+ SD FQQVSFVNSIATT GG HV+ + D I ++ + VKKKNK
Sbjct: 279 SVSDGAFQQVSFVNSIATTSGGTHVNYIADQICNRLADQVKKKNKT-------------- 324
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
G LK Q++NHI+IF+N IVNP+F+SQTKE +T +
Sbjct: 325 ---------------------GATLKAAQIRNHIFIFVNAQIVNPSFNSQTKEQLTTKAS 363
Query: 449 SFGSTCV-------------------------------------------PKLEDANDAG 465
FGS CV PKL +AN AG
Sbjct: 364 QFGSKCVLEEEFYKKILKTDVMNNILHFAAQKADQILKKSDGGRRTRMNNPKLVEANKAG 423
Query: 466 TKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEIN 525
TK+ CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +NAEI
Sbjct: 424 TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASFDQISKNAEIQ 483
Query: 526 NLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP 585
N+ +GLQ+ K+YT + K LRYG LMIMTDQD DGSHIKGL+INF+ +P+LL++P
Sbjct: 484 NIKNFIGLQHKKEYT---ETKGLRYGHLMIMTDQDHDGSHIKGLLINFLQAQFPSLLKIP 540
Query: 586 -FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPIIK K ++ SF+++PE+EEW E + KYYK
Sbjct: 541 EFLIEFITPIIKVWKGDPKNPTKQRSFFTMPEYEEWLEAHKGERGWDHKYYK 592
Score = 132 bits (332), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE Y+P++PMVL+NGA+GIGTGW + IPN+NP ++V+N+KR+++GE PM+PW++
Sbjct: 801 KIEPETYMPVVPMVLINGADGIGTGWSSSIPNYNPEDVVNNLKRLMKGEPIEPMQPWFRG 860
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F GE+ G RF +G I D ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 861 FTGEVVNMGGDRFKFSGIIKETGDKEVEITELPIRTWTQDFKDKLEDIIK-AEK 913
>gi|169606618|ref|XP_001796729.1| hypothetical protein SNOG_06355 [Phaeosphaeria nodorum SN15]
gi|111065066|gb|EAT86186.1| hypothetical protein SNOG_06355 [Phaeosphaeria nodorum SN15]
Length = 1705
Score = 547 bits (1410), Expect = e-152, Method: Compositional matrix adjust.
Identities = 300/654 (45%), Positives = 388/654 (59%), Gaps = 122/654 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQ + LEHI+ RPDTYIGSVE T+ MW+ N T ME R+++YVPGLYKIFDEILVNA
Sbjct: 134 YQMLTHLEHIMKRPDTYIGSVERQTDKMWVYNSTTESMEYRDVSYVPGLYKIFDEILVNA 193
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQ D M+ I++TV++E+ +S+ N+GKGIP+ H + ++VP MIF
Sbjct: 194 ADNKQNDKNMSEIRVTVDRESGEVSILNDGKGIPIEVHAEHGIYVPEMIF---------- 243
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLLTSSNY+D + KVTGGRNGYGAKLCN+FS +F VET S+ K
Sbjct: 244 ---------------GHLLTSSNYDDNQQKVTGGRNGYGAKLCNVFSKEFTVETVDSKQK 288
Query: 216 KSFKQVWKDNMS---KVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAY 272
K ++Q W +NMS K + KSG DD+TKI++ D +F M +D D LI RR Y
Sbjct: 289 KKYRQTWTENMSVMGKAKITDFKSG--DDYTKISWKADYKRFGMDGIDDDFEALIKRRTY 346
Query: 273 DAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR------QDEDGDPVKIIYENVNPRWEV 326
D A + + +KV+LN E++ V +F Y+++YT +ED +I + + RW++
Sbjct: 347 DMAGTLRGIKVYLNKERVKVTSFAKYMEMYTKAIAREQGNNEDDKQKDVIITDKHDRWDI 406
Query: 327 AIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNK 386
A SD F QVSFVNSIATT GG HV+ + D IV++++ V+KK
Sbjct: 407 GFAVSDGSFNQVSFVNSIATTSGGTHVNYISDQIVEKLMAVMKK---------------- 450
Query: 387 FNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ 446
NK + LKP Q+KNHI++F+NC IVNP F SQTKE +T +
Sbjct: 451 ------NK--------------AAVKLKPAQIKNHIFLFVNCSIVNPAFTSQTKEQLTTK 490
Query: 447 KGSFGSTCV-------------------------------------------PKLEDAND 463
FGS V KL DAN
Sbjct: 491 ASQFGSKPVLTDKFLKAIEKTEVIQNIMHFAQQTADKMLKKTDGNKRNRINNAKLTDANK 550
Query: 464 AGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAE 523
AGTK+ CTLILTEG+SA LA++G VV +D +GVFPLRGKLLNVR+A+ QIL+N E
Sbjct: 551 AGTKDGHLCTLILTEGESASVLALAGRAVVNQDLFGVFPLRGKLLNVRDASVDQILKNQE 610
Query: 524 INNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR 583
I N+ K +GLQ+ K Y TV DMK LRYG LMIMTDQD DGSHIKGL+INF+ +P+LLR
Sbjct: 611 IQNIKKFMGLQHKKDY-TVADMKGLRYGHLMIMTDQDHDGSHIKGLLINFLQCQFPSLLR 669
Query: 584 LP-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+P FL EFITPI+K K R SF+S+PE+EEWKE+ + KY+K
Sbjct: 670 IPGFLLEFITPIVKVWKGDPKHPRSLKSFFSMPEYEEWKEQHKLEKGWDHKYFK 723
Score = 115 bits (288), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 78/118 (66%), Gaps = 5/118 (4%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIK-RMIRG---EDPLPMKP 714
+IEPE +IP++P +LVNG+ GIGTGW ++IPN NP +I+DNI+ R+ G ED PM P
Sbjct: 932 KIEPEMFIPVLPTILVNGSSGIGTGWSSEIPNFNPMDIIDNIRIRLQDGASKEDMKPMTP 991
Query: 715 WYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
WYK F G + RF G I +++LE+TEL V WT D+K+ L+ ++ AEK
Sbjct: 992 WYKGFTGTTETLAADRFQFTGTIRQTGENELEVTELPVRYWTQDFKEKLEDIIK-AEK 1048
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 35/51 (68%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
DYDYLLGM WSLT ER +L K+ DK E++ L K +P D+W+ DLDA
Sbjct: 1216 DYDYLLGMAIWSLTQERVEKLRKQIGDKEEEVDTLIKLSPKDIWNVDLDAF 1266
>gi|156394525|ref|XP_001636876.1| predicted protein [Nematostella vectensis]
gi|156223983|gb|EDO44813.1| predicted protein [Nematostella vectensis]
Length = 516
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 297/574 (51%), Positives = 356/574 (62%), Gaps = 122/574 (21%)
Query: 7 DFD------PDVQQNGNGPSPKKKTPANK---MSVEKIYQKKSQLEHILLRPDTYIGSVE 57
DFD P ++ N SP K K +SVE+IY KK+QLEHILLRPDTYIGSVE
Sbjct: 3 DFDTYLPSPPKKKKEINTNSPSKNAGGKKRKRLSVERIYTKKTQLEHILLRPDTYIGSVE 62
Query: 58 PITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN 117
P + M++ + + REITYVPGL+KIFDEILVNA DNKQRDP M+ IKI +N E N
Sbjct: 63 PNKQNMFVYDDILEAIVNREITYVPGLFKIFDEILVNAADNKQRDPAMSTIKIEINPEKN 122
Query: 118 TISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSS 177
ISVWN+G+GIP+ HK+ +++VPTMI FG LLTSS
Sbjct: 123 FISVWNDGRGIPIEMHKEHQVYVPTMI-------------------------FGQLLTSS 157
Query: 178 NYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKS- 236
NYND+E KVTGGRNGYGAKLCNIFS KF VET+C E KK FKQVW +NM K P IK
Sbjct: 158 NYNDDEKKVTGGRNGYGAKLCNIFSKKFSVETACLENKKRFKQVWTNNMGKAAEPVIKEF 217
Query: 237 GSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQ 296
S ++T ITF PDL KFKM +LD+D V L+TRRAYD AAS + V V LNG+KL VK F+
Sbjct: 218 TSNKEYTCITFQPDLEKFKMETLDRDTVALLTRRAYDIAASVRGVSVILNGKKLKVKTFK 277
Query: 297 DYVKLYTDRQDEDGDPVK-------IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKG 349
DYV+L +D + +++E VN RWEV + SD+GFQQ SFVNSIATTKG
Sbjct: 278 DYVQLCLKGATKDKEEDDEEEKKPTVVHEVVNNRWEVCVTVSDKGFQQASFVNSIATTKG 337
Query: 350 GRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLG 409
G HV+ V D IV +++ V+KKKNK G
Sbjct: 338 GTHVNYVTDQIVDKLMTVIKKKNK-----------------------------------G 362
Query: 410 GMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC--------------- 454
G+A+KPFQ+K+H+W+FINCLI NP FDSQTKENMTL+ FGS C
Sbjct: 363 GLAIKPFQIKSHLWVFINCLIENPAFDSQTKENMTLRAKDFGSKCELSDKFIKAVQNSGV 422
Query: 455 ------------------------------VPKLEDANDAGTKNSIDCTLILTEGDSAKS 484
+PKL+DANDAG KNS CTLILTEGDSAK+
Sbjct: 423 MENVMNWMRFKEKAQLNKKCSGSKHSKIRGIPKLDDANDAGGKNSRHCTLILTEGDSAKT 482
Query: 485 LAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
LA+SGL +VGRD+YGVFPLRGKLLNVREA+HKQ+
Sbjct: 483 LAISGLSIVGRDRYGVFPLRGKLLNVREASHKQV 516
>gi|448123839|ref|XP_004204766.1| Piso0_000036 [Millerozyma farinosa CBS 7064]
gi|358249399|emb|CCE72465.1| Piso0_000036 [Millerozyma farinosa CBS 7064]
Length = 1409
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 302/654 (46%), Positives = 396/654 (60%), Gaps = 120/654 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y++ SQLEHIL RPDTYIGSVE MW + E+ M ++ VPGLYKIFDEILVNA
Sbjct: 56 YKRLSQLEHILKRPDTYIGSVERSPMEMWSFDTESESMVFGTVSIVPGLYKIFDEILVNA 115
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP M IK+ ++ E N ISV N+GKGIPV HK EK+++P +IFG+LLTSSNY+
Sbjct: 116 ADNKIRDPNMKNIKVKIDAENNMISVMNDGKGIPVEIHKKEKIYIPELIFGNLLTSSNYD 175
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D +E KVTGGRNGYGAKLCNIFS+ FV+ET+
Sbjct: 176 D-------------------------DERKVTGGRNGYGAKLCNIFSTDFVLETADKNTG 210
Query: 216 KSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
++Q W DNMS+++ P++ K +K ++T+++F PDL KF M SLDKD + ++TRR YD
Sbjct: 211 LVYRQQWNDNMSRMSKPKVTKMKTKTEYTRVSFKPDLGKFGMDSLDKDTLAVLTRRVYDL 270
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYT----DR---QDEDGDPVKIIYENVNPRWEVA 327
+ K+ ++LN +KL +K F++YV+LY DR Q D + ++YE +N RWEVA
Sbjct: 271 CGTVKNCNIYLNDKKLDIKGFKNYVQLYVKAIKDRSPAQFADSNKPTLVYEVINDRWEVA 330
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
A SD F QVSFVNSIATT GG HV + D IV ++ E + + +K
Sbjct: 331 FAVSDGVFNQVSFVNSIATTSGGSHVKYITDQIVNKLTENLSRGDKK------------- 377
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
+KP +KN++++F+NCLI NP F SQTKE++T +
Sbjct: 378 -----------------------SKIKPNDIKNNMFLFVNCLIENPAFTSQTKEHLTTKV 414
Query: 448 GSFG------------------STCV------------------------------PKLE 459
FG +T + KL
Sbjct: 415 SQFGGKKDDKILVSSGFISKIMNTSIVDIIKAARSAREDIELQKADGSRKSRIKNQVKLV 474
Query: 460 DANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQIL 519
DAN AGTK CTLILTEGDSA SLAV+GL VVGR+ YG FPLRGKLLNVREA+ QI
Sbjct: 475 DANKAGTKEGHKCTLILTEGDSALSLAVAGLAVVGRNYYGCFPLRGKLLNVREASADQIA 534
Query: 520 ENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWP 579
+NAEIN L +I+GL++ Y ++E++K LRYG +MIMTDQD DGSHIKGLIINF+ ++P
Sbjct: 535 KNAEINALKQIIGLKHKVHY-SLENIKDLRYGHIMIMTDQDHDGSHIKGLIINFLDTSFP 593
Query: 580 TLLRLP-FLEEFITPIIKA-TKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
LL++P FL EFITPI+K K ++ LSFY++PEFE+W+E ++ KYYK
Sbjct: 594 GLLQIPGFLLEFITPIVKVFLKNKKVLSFYTMPEFEQWRETEGKTQRWRHKYYK 647
Score = 126 bits (316), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 74/106 (69%)
Query: 658 GRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYK 717
G +EPEWY+P++PMVLVNGAEGIGTGW T IP NP +IV NI+R++ GE+ +PM PW+K
Sbjct: 855 GTVEPEWYLPVLPMVLVNGAEGIGTGWSTNIPPFNPTDIVQNIRRLMAGEEMIPMTPWFK 914
Query: 718 NFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTL 763
++GEI +F V G I +D+ LEI+E+ W + K+ L
Sbjct: 915 GWEGEIQPISQDKFRVMGTIEQIDNTTLEISEIPPKTWINNMKEFL 960
Score = 70.9 bits (172), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 23/140 (16%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDL------------D 899
YDYLLGMT WSLT ER +LL ++DDK ELNIL +K+ DLW++DL +
Sbjct: 1159 YDYLLGMTMWSLTKERYEKLLSQKDDKEKELNILLRKSAKDLWNEDLEDFMVSWEKFLQE 1218
Query: 900 ALREKDKIHPCPG----GNRTRGLALKRQTRYQPSNRVLTSRDE----PMVVSSGEDAPP 951
L + + P G RTR +Q++ +P + + + P+ +D P
Sbjct: 1219 DLENRSTLIPMKGTKKSAKRTR---TTKQSKQEPPKKKQANEKKQQTLPVKTEPTDDLPT 1275
Query: 952 PTKASPVKKKKPAAKRPAPK 971
+ S + +PAA++PA +
Sbjct: 1276 FFETSSKEISRPAAEKPAKR 1295
>gi|66826863|ref|XP_646786.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
gi|74997376|sp|Q55BP5.1|TOP2_DICDI RecName: Full=Probable DNA topoisomerase 2; AltName: Full=DNA
topoisomerase II
gi|60474622|gb|EAL72559.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
Length = 1521
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 303/652 (46%), Positives = 393/652 (60%), Gaps = 122/652 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
S+E+IYQKK L+ ILLRPDTYIGS E E +W+ E M R++++VPG+YKIFDE
Sbjct: 102 SIEEIYQKKELLDQILLRPDTYIGSTERQEEELWVW--EDKRMVHRKVSFVPGIYKIFDE 159
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNKQR+ M IK+ +++E ISV N+G GIP+ H + K+++P +IFG+LLT
Sbjct: 160 ILVNAADNKQREGNMKFIKVVIDREKGFISVTNDGAGIPIQVHSEHKIYIPELIFGNLLT 219
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
SS+Y +D E ++TGGRNG+GAKL NIFS+KF+VE +
Sbjct: 220 SSHY-------------------------DDSEKRLTGGRNGFGAKLANIFSTKFIVECA 254
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
S+ KK +KQ + +NM P+I S +K D+TKITF P+L +F M D D+V L+++
Sbjct: 255 DSKSKKLYKQTFTNNMRSKEDPKITSYQNKTDYTKITFYPELDRFGMVEFDDDLVALLSK 314
Query: 270 RAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIA 329
R YD A +KV LN E+L +++F+ Y+ LY DE+ P K+ YE V+ RWE+A+
Sbjct: 315 RVYDIAGCNPTLKVSLNDEELGIRSFEKYINLYF--PDEENAP-KVYYEKVSDRWELAVT 371
Query: 330 PS-DRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
S + F QVSFVNSI T KGG HV + IV I E V KKNK
Sbjct: 372 LSKESQFNQVSFVNSICTVKGGTHVTHALSNIVTAIQEQVNKKNK--------------- 416
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
G +KP +KNH+ +F+NCLI NP FDSQTKE +T +
Sbjct: 417 --------------------GSADIKPAFIKNHLSVFVNCLIENPHFDSQTKETLTSKIS 456
Query: 449 SFGSTC-----------------------------------------------VPKLEDA 461
SFGS C +PKL+DA
Sbjct: 457 SFGSRCEPSEKFIKRVLDSKSGIVASILEFAQFKDQSALKRSTSSGGKKGKVSIPKLDDA 516
Query: 462 NDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILEN 521
N AG S DCTLILTEGDSAKSLA +G+ VVG+D YG FPL+GKLLNVR+ + K ++ N
Sbjct: 517 NLAGGTKSEDCTLILTEGDSAKSLATAGISVVGKDHYGAFPLKGKLLNVRDQSTK-VINN 575
Query: 522 AEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTL 581
EINN+V ILGL+Y K Y T+ D LRYG LMIMTDQD DGSHIKGLIIN +HH WPTL
Sbjct: 576 DEINNIVTILGLKYGKVYETLSD---LRYGHLMIMTDQDHDGSHIKGLIINMVHHFWPTL 632
Query: 582 LRLP-FLEEFITPIIKATKAREE-LSFYSLPEFEEWKEETTNWHTYKIKYYK 631
LR+P FL EFITPI+K K ++ +SFY++PEF +W+E TN + +KYYK
Sbjct: 633 LRMPGFLVEFITPIVKVFKNNQKPISFYTMPEFLKWRE--TNDKGWDVKYYK 682
Score = 120 bits (300), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 96/162 (59%), Gaps = 14/162 (8%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+++P++YIP+IPM+LVNG GIGTGW + IPN+NPR+++ N++ I G+ P+KPWY+
Sbjct: 891 KVQPKFYIPVIPMILVNGCVGIGTGWSSTIPNYNPRDLIQNMRLAIDGKPLKPIKPWYRG 950
Query: 719 FKGEIDYCGDSR-----FVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL------- 766
F G I+ S+ ++ G L D++ EITEL +G WT DY++ LD L
Sbjct: 951 FLGSIEANQGSKVQGGQYLSKGIWKKLSDNRFEITELPIGFWTQDYRELLDELETPGTRK 1010
Query: 767 -LHGAEKDEVHPGPGRKSHPRPIAPKSYKIDDDSEEEEIEEV 807
++ + G K+ P +S ++DDD + E++ E
Sbjct: 1011 KKKEEKEKKAASRKGTKAKP-TTTKRSKRVDDDDDNEKVTEA 1051
Score = 63.2 bits (152), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 7/127 (5%)
Query: 827 ERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILK 886
E AA D+E +E++D K YDYLL + WSLT+ER +L+++RD K E +IL
Sbjct: 1202 EEDAAISSDEEKDGAQEEQDDDTKGYDYLLSLPLWSLTLERVKKLIEERDSKKKEWDILL 1261
Query: 887 KKAPTDLWSDDLDALR---EKDKIHPCPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVV 943
+++ DLDAL + + N+T L + +T+ P + ++++ VV
Sbjct: 1262 STPIQEIYKRDLDALEKALDDQDAYDESLKNQTESLKKRTKTKALPRAKKISAK----VV 1317
Query: 944 SSGEDAP 950
++AP
Sbjct: 1318 KDTKEAP 1324
>gi|149234581|ref|XP_001523170.1| DNA topoisomerase 2 [Lodderomyces elongisporus NRRL YB-4239]
gi|146453279|gb|EDK47535.1| DNA topoisomerase 2 [Lodderomyces elongisporus NRRL YB-4239]
Length = 1492
Score = 545 bits (1405), Expect = e-151, Method: Compositional matrix adjust.
Identities = 307/659 (46%), Positives = 397/659 (60%), Gaps = 122/659 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEHIL RPDTYIGSVE MW + E+ M+ +E+T VPGLYKIFDEILVNA
Sbjct: 83 YQKLSQLEHILKRPDTYIGSVEKTRTEMWCFDVESESMKFQEVTIVPGLYKIFDEILVNA 142
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP M IK+ ++ E N I V N+GKGIPV H EKM++P +IFG+LLTSSNY
Sbjct: 143 ADNKIRDPSMKNIKVKIDPENNVIQVMNDGKGIPVEIHTKEKMYIPELIFGNLLTSSNY- 201
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
+D++ KVTGGRNG+GAKLCNIFS++F VET+
Sbjct: 202 ------------------------DDDQKKVTGGRNGFGAKLCNIFSTQFEVETADLNTG 237
Query: 216 KSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
K +KQVW DNM+KV P+I + +K ++TKITF PDL KF M SLD+D++ ++ RR YD
Sbjct: 238 KLYKQVWTDNMTKVGKPKITTLKTKKEYTKITFMPDLQKFGMDSLDEDLLSVLRRRVYDL 297
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYT----DRQDE-DGDP------VKIIYENVNPR 323
+ ++ ++LN ++L V +F+ YV++Y +R E +GD I++E N R
Sbjct: 298 CGTVRNCNIYLNDKRLSVNSFKAYVEMYVKAIRERSPEPEGDAESKPATTTIVHEVFNDR 357
Query: 324 WEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLF 383
WEVA A SD F QVSFVNSIATT GG HV V D I+ +++E + K+ K
Sbjct: 358 WEVAFAVSDGNFNQVSFVNSIATTAGGTHVKYVSDQIITKLVETLSKREK---------- 407
Query: 384 GNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENM 443
G K + +KP +V+++++IFIN LI NP F SQTKE +
Sbjct: 408 GKK-----------------------KLMIKPQEVRDNMFIFINSLIENPAFTSQTKEQL 444
Query: 444 TLQKGSFGS----------------TCVP------------------------------K 457
T + FG T +
Sbjct: 445 TTKPSQFGGKEKFIATENLINRILKTGIADKIRAIANANEDKALQKADGSKKLRIKNQVN 504
Query: 458 LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQ 517
L DAN AGTK+ + CTLILTEG SA +LAV+GL VVGRD YG FPLRGKLLNVREA+ Q
Sbjct: 505 LVDANKAGTKDGLKCTLILTEGLSALNLAVAGLTVVGRDYYGCFPLRGKLLNVREASADQ 564
Query: 518 ILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHN 577
+ +N EIN L +I+GLQ+ K YT E++K+LRYG +MIMTDQDQDGSHIKGLIINF+ +
Sbjct: 565 VSKNIEINALKQIIGLQHKKVYTQ-ENIKSLRYGHIMIMTDQDQDGSHIKGLIINFLETS 623
Query: 578 WPTLLRLP-FLEEFITPIIKAT----KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+P LL +P FL +FITPI+K T A++ + FYS+PEFE W+E + KYYK
Sbjct: 624 FPGLLDIPGFLLQFITPIVKVTVNGRGAKKVIPFYSMPEFEAWREGEGQNCRWTQKYYK 682
Score = 127 bits (319), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 77/104 (74%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP+WY+P++PM+LVNGA+GIGTGW T IP++NP +IV N++R++RGE M PWYK +
Sbjct: 892 VEPQWYLPVLPMILVNGADGIGTGWSTNIPSYNPLDIVANLRRLMRGEPMEEMNPWYKGW 951
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTL 763
G+I+ G +F ++G I +DD+ +EI+E+ V WT K+ L
Sbjct: 952 YGDIEKVGPQKFKISGRIEQIDDNTIEISEVPVKTWTNTVKEFL 995
Score = 58.5 bits (140), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 834 EDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDL 893
E DE + E YDY+LGMT WSLT ER +LL +++ +L L K DL
Sbjct: 1187 EVDENPTNEHRPETVSSSYDYILGMTIWSLTHERYVKLLAEKEKYQNQLQDLVSKTSVDL 1246
Query: 894 WSDDLD----------ALREKDKIHPCPGGNRTRGLALKRQ 924
W DLD A E+++ GGN+ G + +R+
Sbjct: 1247 WMHDLDVFVEAYELFLAREEQERESLSTGGNKKNGTSRRRK 1287
>gi|429856265|gb|ELA31187.1| DNA topoisomerase 2 [Colletotrichum gloeosporioides Nara gc5]
Length = 1781
Score = 544 bits (1402), Expect = e-151, Method: Compositional matrix adjust.
Identities = 309/734 (42%), Positives = 403/734 (54%), Gaps = 156/734 (21%)
Query: 21 PKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITY 80
P P +K + YQK +QLEHI+ RPDTYIGSVEP + MW+ N+ET ME R++T+
Sbjct: 116 PAASAPKSKKNATDTYQKLTQLEHIIKRPDTYIGSVEPTEQPMWVFNKETKLMEYRKVTF 175
Query: 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
VPGLYKIFDEILVNA DNKQRD M +K+TV++E ISV NNGKGIPV H EK+++
Sbjct: 176 VPGLYKIFDEILVNAADNKQRDATMTYMKVTVDRENGEISVENNGKGIPVEIHGKEKIYI 235
Query: 141 PTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNI 200
P MIFGHLLT SNY +DEE K GGRNGYGAKLCN+
Sbjct: 236 PEMIFGHLLTGSNY-------------------------DDEEKKTVGGRNGYGAKLCNV 270
Query: 201 FSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLD 260
FS +F +E S K +KQVW DNMSK +I S DF ++TF PD +F MT +D
Sbjct: 271 FSEQFTLECQDSTNGKRYKQVWTDNMSKCGKAKITSSKTSDFVRVTFKPDFKRFSMTGID 330
Query: 261 KDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDGDPVKI 315
D+ LI RR YD A + ++VK +LNG + + F+ Y ++Y +R E+G K+
Sbjct: 331 DDLEALIQRRVYDMAGTVRNVKTYLNGTHIKLA-FKGYCEMYAKAIAKERGAEEGVEPKV 389
Query: 316 IYE----NVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK 371
+ E + +PRWE+ SD FQQ+SFVNSIATT GG HV+ + D I +++ + KK
Sbjct: 390 VVEIDKTDAHPRWEIGFTVSDGSFQQISFVNSIATTSGGTHVNYIADQITGSLLKTLDKK 449
Query: 372 NKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIV 431
K G ALK ++NHI+IF+NC +
Sbjct: 450 KK------------------------------------GHALKQNHIRNHIFIFVNCFVN 473
Query: 432 NPTFDSQTKENMTLQKGSFGSTCV------------------------------------ 455
NP F SQTKE MT + FGS C
Sbjct: 474 NPAFTSQTKEQMTTKVSQFGSKCPLTEDFLKKIAKSDAIQNIIDFAEKKADKMMAKSDGN 533
Query: 456 -------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLL 508
KL DAN AGT++ +CTLILTEGDSAKSLAV+G ++ D+ GVFPLRGK+L
Sbjct: 534 KRSRISNSKLVDANLAGTRHGHECTLILTEGDSAKSLAVAGRAILDPDRIGVFPLRGKML 593
Query: 509 NVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKG 568
NVR+A+ QI +N EI N+ + LGL++ Y D K LRYG LMIM DQD DGSHIKG
Sbjct: 594 NVRDASIDQITKNQEIQNIKQFLGLKHKAVYN---DTKGLRYGHLMIMADQDHDGSHIKG 650
Query: 569 LIINFIHHNWPTLLRLP-FLEEFITPIIKA------TKAREELSFYSLPEFEEWKE---- 617
L+INF+ +P+LL++P F EFITPI+K K + SF++ P++EEWKE
Sbjct: 651 LLINFLQVQYPSLLQIPDFFREFITPIVKVWQGPNPKKPQRLKSFFTQPQYEEWKESHTS 710
Query: 618 ETTNWHTYKIKYYK----------VVYVTGV---------------LLFKMNLHKVTSDS 652
E + WH KY+K VY T + LF++ K +D+
Sbjct: 711 ELSRWH---YKYFKGLGTSSNEDAQVYFTNLDDHLKEFNTMKPDEAELFELAFSKKKADA 767
Query: 653 ISMFIGRIEPEWYI 666
++G P Y+
Sbjct: 768 RKEWLGNFVPGTYL 781
Score = 105 bits (261), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 73/121 (60%), Gaps = 11/121 (9%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP--------L 710
RIEP+ Y P+IPM+L NGA+GIGTGW T IPN++P IV+N+KR + DP
Sbjct: 930 RIEPKCYAPVIPMILCNGADGIGTGWSTSIPNYHPMHIVENLKRRMGRLDPENPEGAPFE 989
Query: 711 PMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLE--ITELQVGKWTTDYKDTLDTLLH 768
PM PW++ +KG R+ NG I +D+ E ITEL + WT D+K L+ ++
Sbjct: 990 PMMPWFRGWKGTPQVADKDRYKFNG-ICDIDEKTGEVVITELPIRMWTDDFKAKLEEVIS 1048
Query: 769 G 769
G
Sbjct: 1049 G 1049
Score = 45.4 bits (106), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
YDYLL M WSLT ER + L ++ + K E + L + DLW DLD
Sbjct: 1221 YDYLLSMPLWSLTQERLDRLQRQIESKKAEHDSLLALSEKDLWCQDLDEF 1270
>gi|330801777|ref|XP_003288900.1| hypothetical protein DICPUDRAFT_4475 [Dictyostelium purpureum]
gi|325081045|gb|EGC34576.1| hypothetical protein DICPUDRAFT_4475 [Dictyostelium purpureum]
Length = 1162
Score = 544 bits (1402), Expect = e-151, Method: Compositional matrix adjust.
Identities = 304/651 (46%), Positives = 394/651 (60%), Gaps = 122/651 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E+IYQKK L+ ILLRPDTYIGS E E +W+ E M RR++++VPG+YKIFDE
Sbjct: 3 TLEEIYQKKELLDQILLRPDTYIGSTEKQEEELWVW--ENERMVRRKVSFVPGIYKIFDE 60
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNKQR+ M IK+ ++ ISV N+G GIP+ HK+ K+++P +IF
Sbjct: 61 ILVNAADNKQREETMKFIKVEIDSANGRISVTNDGAGIPIHIHKEHKVYIPELIF----- 115
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
GHLLTSS+Y+D E ++TGGRNG+GAKL NIFS+KF+VE +
Sbjct: 116 --------------------GHLLTSSHYDDSEKRLTGGRNGFGAKLANIFSTKFIVECA 155
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGS-KDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
S KK +KQV+ +NM P+I S S K ++TKITF P+L++F M S D+D++ L+++
Sbjct: 156 DSGSKKLYKQVFTNNMRNKEDPKITSYSNKTNYTKITFYPELSRFGMVSFDEDLIALLSK 215
Query: 270 RAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIA 329
R YD A +KV LN ++L +++F+ YV LY D D K+ YE V+PRWE+A+
Sbjct: 216 RVYDIAGCNPTLKVSLNDQELGIRSFEKYVNLYFPDAD---DAPKVYYEKVSPRWEIAVT 272
Query: 330 PSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
S G FQQVSFVNSI T KGG HV + ++ +I E V KK+K
Sbjct: 273 LSTEGQFQQVSFVNSICTVKGGTHVTHALSKVISEITEAVLKKHK--------------- 317
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
G +KP VKNH+++F+N LI NP FDSQTKE +T +
Sbjct: 318 ---------------------GGEIKPAFVKNHLFVFVNSLIENPHFDSQTKETLTSKIT 356
Query: 449 SFGSTCVP----------------------------------------------KLEDAN 462
SFGS C P KL+DA+
Sbjct: 357 SFGSRCEPSEKFLKKVIDSKSGIIATILAFVEFKEQQSIKSSSKPGKKGKVTHSKLDDAS 416
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
AG+ S DCTLILTEGDSAK+LA++G+ VVG+D YG FPL+GKLLNVRE K L+N
Sbjct: 417 LAGSSKSADCTLILTEGDSAKTLAIAGISVVGKDHYGAFPLKGKLLNVREQGQKA-LKND 475
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EI N++ ILGLQ KY ED+ LRYG LMIMTDQD DGSHIKGLIINFIHH WP LL
Sbjct: 476 EICNIMMILGLQPFVKY---EDVSKLRYGHLMIMTDQDNDGSHIKGLIINFIHHFWPQLL 532
Query: 583 RLP-FLEEFITPIIKATK-AREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+P FL EFITPI+K +K + +SFY+LPEF EW+E+ N + IKYYK
Sbjct: 533 HMPGFLVEFITPIVKVSKNGKNAISFYTLPEFLEWREK--NPKGWDIKYYK 581
Score = 113 bits (283), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 75/109 (68%), Gaps = 1/109 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+++P+ YIPIIPM+LVNG GIGTGW T IP++NPR++V+N+K ++ ++ P++PWY+
Sbjct: 790 KVQPKHYIPIIPMILVNGTVGIGTGWSTTIPSYNPRDLVENMKLLLNKQELKPIQPWYRG 849
Query: 719 FKGEIDYCG-DSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
F GEI G +++ G L + E+TEL + WT DY++ LD L
Sbjct: 850 FTGEILESGKGGQYLSRGVWRKLSEHSFEVTELPINSWTQDYREFLDEL 898
Score = 45.1 bits (105), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 847 DPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDL 898
D ++ YDYLL M W+LTMER ++++++D K E +I +D ++ DL
Sbjct: 1080 DEERGYDYLLSMPLWTLTMERVKKIIEEKDQKKKEWDIHLGTPLSDFYNRDL 1131
>gi|380477884|emb|CCF43907.1| topoisomerase IV, partial [Colletotrichum higginsianum]
Length = 1728
Score = 544 bits (1402), Expect = e-151, Method: Compositional matrix adjust.
Identities = 299/669 (44%), Positives = 387/669 (57%), Gaps = 131/669 (19%)
Query: 26 PANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLY 85
P +K + YQK +QLEHI+ RPDTYIGSVEP + MW+ N+ET ME R++T+VPGLY
Sbjct: 56 PKSKKTATDTYQKLTQLEHIIKRPDTYIGSVEPTEQPMWVFNKETKLMEYRKVTFVPGLY 115
Query: 86 KIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIF 145
KIFDEILVNA DNKQRD M +KI+V++E I+V NNGKGIPV H EK+++P MIF
Sbjct: 116 KIFDEILVNAADNKQRDATMTYMKISVDREAGEITVENNGKGIPVEIHGKEKIYIPEMIF 175
Query: 146 GHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF 205
GHLLT SNY +D+E K GGRNGYGAKLCN+FS +F
Sbjct: 176 GHLLTGSNY-------------------------DDDEKKTVGGRNGYGAKLCNVFSEQF 210
Query: 206 VVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVD 265
+E S K +KQVW DNMSK +I S DF ++TF PD +F MT +D D+
Sbjct: 211 TLECQDSNSGKRYKQVWTDNMSKCGKAKITSSKTSDFVRVTFKPDFKRFSMTGIDDDLEA 270
Query: 266 LITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDGDPVKIIYE-- 318
LI RR YD A + + +KV +NG + + F+ Y ++Y +R E+G K++ E
Sbjct: 271 LIYRRVYDMAGTVRGIKVHMNGTHIKLA-FKGYCEMYAKAIAKERGAEEGVEPKVVVEVD 329
Query: 319 --NVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLG 376
+ +PRWE+A SD FQQVSFVNSIATT GG HV+ + D I +++ + KK K
Sbjct: 330 KTDAHPRWEIAFTVSDGSFQQVSFVNSIATTSGGTHVNYIADQITGSLLKTLDKKKK--- 386
Query: 377 CTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFD 436
G ALK ++NHI+IF+NCL+ NP F
Sbjct: 387 ---------------------------------GHALKQNHIRNHIFIFVNCLVNNPAFT 413
Query: 437 SQTKENMTLQKGSFGSTCV----------------------------------------- 455
SQTKE MT + FGS C
Sbjct: 414 SQTKEQMTTKVSQFGSKCSLTEEFLKKIAKSDAIQNIIDFAEKKADKMMAKSDGNKRSRI 473
Query: 456 --PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREA 513
KL DAN AGT++ +CTLILTEGDSAKSLAV+G ++ D+ GVFPLRGK+LNVR+A
Sbjct: 474 SNSKLVDANLAGTRHGHECTLILTEGDSAKSLAVAGRAILDPDRIGVFPLRGKMLNVRDA 533
Query: 514 THKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINF 573
+ QI +N EI N+ + LGL++ + YT D K+LRYG LMIM DQD DGSHIKGL+INF
Sbjct: 534 SIDQITKNQEIQNIKQFLGLKHKQTYT---DTKSLRYGHLMIMADQDHDGSHIKGLLINF 590
Query: 574 IHHNWPTLLRLP-FLEEFITPIIKA------TKAREELSFYSLPEFEEWKE----ETTNW 622
+ +P+LL++P F EFITPI+K K SF++ P++EEWKE E + W
Sbjct: 591 LQVQYPSLLQIPDFFREFITPIVKVWQGPNPKKPARLKSFFTQPQYEEWKELHKSELSRW 650
Query: 623 HTYKIKYYK 631
H KY+K
Sbjct: 651 H---YKYFK 656
Score = 102 bits (253), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 11/123 (8%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP--------L 710
RIEP+ Y PIIPM+L NGA+GIGTGW T IPN++P +IV+N+KR + D
Sbjct: 865 RIEPKVYAPIIPMILCNGADGIGTGWSTSIPNYHPIDIVNNLKRRMGRLDESTPEDAAFQ 924
Query: 711 PMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLE--ITELQVGKWTTDYKDTLDTLLH 768
PM PW++ +KG + R+ NG I LD+ E +TEL + WT D+K L+ ++
Sbjct: 925 PMMPWFRGWKGTPEQSEKDRYKFNG-ICELDERTGEVVVTELPIRMWTDDFKAKLEEVIS 983
Query: 769 GAE 771
G +
Sbjct: 984 GVK 986
Score = 48.5 bits (114), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
YDYLL M WSLT ER L ++ D+K E + L + DLW+ DLD
Sbjct: 1156 YDYLLSMPIWSLTYERLERLQRQIDNKKAEHDALLALSEKDLWTQDLDEF 1205
>gi|312076266|ref|XP_003140784.1| hypothetical protein LOAG_05200 [Loa loa]
Length = 446
Score = 544 bits (1401), Expect = e-151, Method: Compositional matrix adjust.
Identities = 277/504 (54%), Positives = 336/504 (66%), Gaps = 104/504 (20%)
Query: 63 MWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVW 122
MW+ + ET+ + +REI+YVPGLYKIFDEILVNA DNKQRDPKMN IK+ +N+E N IS++
Sbjct: 1 MWVYDTETDRIVQREISYVPGLYKIFDEILVNAADNKQRDPKMNLIKVNINKEENEISIY 60
Query: 123 NNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDE 182
NNG+GIPVV HK EK++VP +IF G LLTSSNY+D
Sbjct: 61 NNGRGIPVVLHKIEKLYVPELIF-------------------------GTLLTSSNYDDS 95
Query: 183 EDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDF 242
E KVTGGRNGYGAKLCNIFS +F +ETS +EY+K+FKQ W +NMSK P+I + ++DF
Sbjct: 96 ERKVTGGRNGYGAKLCNIFSKEFTLETSTNEYEKAFKQTWVNNMSKGEEPKITTSKREDF 155
Query: 243 TKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY 302
T++TF PDL KFKMT LD D+V L+ RRAYD A ST+ VKVFLN +++PV+ F+ YV+ Y
Sbjct: 156 TRVTFKPDLAKFKMTKLDDDIVALMCRRAYDIAGSTRGVKVFLNNKQIPVQGFKQYVEQY 215
Query: 303 TDRQ-DEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIV 361
D +G+ K++YE+V+PRWEVA+ SD+GFQQVSF NSIATTKGGRHVD VVD I
Sbjct: 216 VKHNVDNNGEAYKVVYESVSPRWEVALTISDKGFQQVSFANSIATTKGGRHVDYVVDQIA 275
Query: 362 KQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNH 421
++I+V+KKK IG + GG+ +KPFQ+KNH
Sbjct: 276 SKLIDVIKKK--------------------------------IG-KSGGINVKPFQIKNH 302
Query: 422 IWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC--------------------------- 454
+WIF+N LI NPTFDSQTKE MTLQ SFGSTC
Sbjct: 303 MWIFVNALIENPTFDSQTKETMTLQSKSFGSTCELSEKFIQAALKCGIVEAIMAWVRFKQ 362
Query: 455 ------------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRD 496
VPKLEDANDAGTKNS CTLILTEGDSAKSLAVSGLGVVGRD
Sbjct: 363 QETLDKKCSSKKTSKLKGVPKLEDANDAGTKNSAQCTLILTEGDSAKSLAVSGLGVVGRD 422
Query: 497 KYGVFPLRGKLLNVREATHKQILE 520
KYGVFPLRGK+LNVRE HKQ+++
Sbjct: 423 KYGVFPLRGKMLNVREGNHKQVID 446
>gi|255729204|ref|XP_002549527.1| DNA topoisomerase 2 [Candida tropicalis MYA-3404]
gi|240132596|gb|EER32153.1| DNA topoisomerase 2 [Candida tropicalis MYA-3404]
Length = 1398
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 311/672 (46%), Positives = 396/672 (58%), Gaps = 125/672 (18%)
Query: 25 TPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGL 84
TP N S + YQK SQLEHIL RPDTYIGSVE MW + ET M +E+T VPGL
Sbjct: 131 TP-NPASASETYQKLSQLEHILKRPDTYIGSVEKTKMEMWCFDAETESMVFKEVTIVPGL 189
Query: 85 YKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMI 144
YKIFDEILVNA DNK RDP M IK+ ++ E NTI V N+GKGIPV H E M++P +I
Sbjct: 190 YKIFDEILVNAADNKIRDPTMKNIKVKIDPENNTIEVMNDGKGIPVEMHTKENMYIPELI 249
Query: 145 FGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSK 204
F G+LLTSSNY+D + KVTGGRNG+GAKLCNIFS++
Sbjct: 250 F-------------------------GNLLTSSNYDDNQKKVTGGRNGFGAKLCNIFSTQ 284
Query: 205 FVVETSCSEYKKSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITFTPDLTKFKMTSLDKDM 263
F VET+ K +KQVW DNM+ V P+I + +K ++TKITF PDL KF M SLD+D+
Sbjct: 285 FEVETADLNTGKLYKQVWTDNMTNVAKPKITTLRTKKEYTKITFKPDLAKFDMDSLDEDL 344
Query: 264 VDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT--------DRQDEDG---DP 312
+ ++ RR YD + K+ ++LN ++L + +F+ YV++Y + EDG +
Sbjct: 345 LAVLRRRVYDLCGTVKNCNIYLNDKRLSISSFKSYVEMYVKAIRERSPEPLTEDGTSKNF 404
Query: 313 VKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKN 372
I++E N RWEVA A SD F QVSFVNSIATT GG HV V D I+ +++E
Sbjct: 405 TTIVHEVFNERWEVAFAVSDGTFNQVSFVNSIATTAGGTHVKYVSDQIINKLVE------ 458
Query: 373 KDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVN 432
TL + +KP +V++++++FINCLI N
Sbjct: 459 ---------------------------TLSKKEKGKKKLMIKPQEVRDNMFLFINCLIEN 491
Query: 433 PTFDSQTKENMTLQKGSFG-----------------STCVPK------------------ 457
P F SQTKE +T + FG ++ V K
Sbjct: 492 PAFTSQTKEQLTTKVSQFGGKQKFVANDNLINRILKTSIVDKIRAIANANEDKALQKADG 551
Query: 458 -----------LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGK 506
L DAN AGTK +CTLILTEG SA +LAV+GL VVGRD YG FPLRGK
Sbjct: 552 SRKSRIKGQVSLVDANKAGTKLGHNCTLILTEGLSALNLAVAGLSVVGRDYYGCFPLRGK 611
Query: 507 LLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHI 566
LLNVREA+ QI +NAEIN L +I+GLQ+ K Y T E++K LRYG +MIMTDQDQDGSHI
Sbjct: 612 LLNVREASADQISKNAEINALKQIIGLQHKKHY-TAENIKQLRYGHIMIMTDQDQDGSHI 670
Query: 567 KGLIINFIHHNWPTLLRLP-FLEEFITPIIKAT-KAREE-----LSFYSLPEFEEWKEET 619
KGLIINF+ ++P LL +P FL EFITPI+K T K R + FY++PEFE W++
Sbjct: 671 KGLIINFLETSFPGLLEIPGFLLEFITPIVKVTIKTRGSGNNRVIPFYTMPEFEAWRDGE 730
Query: 620 TNWHTYKIKYYK 631
+ + KYYK
Sbjct: 731 GSQCRWTHKYYK 742
Score = 132 bits (331), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 79/104 (75%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+P++PM+LVNGAEGIGTGW T IP++NP+++V NIKR++ GE+ M PWYK +
Sbjct: 952 VEPEWYLPVLPMILVNGAEGIGTGWSTNIPSYNPKDLVANIKRLMNGEELQEMTPWYKGW 1011
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTL 763
G+I+ G ++ + G I + D++++ITEL V WT +YK+ L
Sbjct: 1012 DGDIEQSGPQKYKITGRIEQVGDNEVDITELPVKVWTNNYKEFL 1055
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 73/177 (41%), Gaps = 26/177 (14%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCP 911
Y+YLL M+ WSLT E LL++RD K ELN+L K T+LW DLD E +
Sbjct: 1231 YNYLLSMSLWSLTREHFERLLQQRDQKEEELNVLLGKTATNLWEADLDEFMEAYEAFLKK 1290
Query: 912 GGNRTRGLAL--KRQTRYQPSNRVLTSRDEPMVVSSGEDAPPPTKASPVKKKKPAAKRPA 969
LA K++ + + +S+D+P A K P + K K P+
Sbjct: 1291 DEEERESLASNGKKKPAKRRARNTASSKDQP--------ASKKLKTEPKETKVTKKKSPS 1342
Query: 970 PKSDSSDLSDSDGDSDFASRKKKTAAAKKAKPAKKESEYSSTVCLFKRFGRRNCNDG 1026
P + KK+T +K KP E + + F + + + G
Sbjct: 1343 P----------------VTVKKETVTKEKEKPVVPEEKKKGDILSFFKTNKEEKSSG 1383
>gi|10121861|gb|AAG13403.1|AF285157_1 topoisomerase II alpha-2 [Homo sapiens]
Length = 526
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 292/533 (54%), Positives = 356/533 (66%), Gaps = 77/533 (14%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 27 RLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIF 85
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 86 DEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIF--- 142
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 143 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ EYKK FKQ W DNM + E+K + +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE G+ +K+I+E VN RWEV
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVC 300
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK G + K
Sbjct: 301 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNKG-GVAV------KA 353
Query: 388 NNVKNNKLQMAKTLID-----------------------------IGVRL-GGMALKPF- 416
+ VKN+ LI+ I L + PF
Sbjct: 354 HQVKNHMWIFVNALIENPTFDSQTKENMTLQPKSFGSTCQLSEKFIKAHLYSRFLIDPFF 413
Query: 417 --QVKNHIWIF----INCLIVNPT-----FDSQTKENMTLQKGSFGST-CVPKLEDANDA 464
+ N I+ F I C IV F +Q + N +PKL+DANDA
Sbjct: 414 PNMIPNMIFSFSKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDANDA 473
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQ 517
G +NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQ
Sbjct: 474 GGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQ 526
>gi|150951045|ref|XP_001387295.2| DNA topoisomerase II [Scheffersomyces stipitis CBS 6054]
gi|149388275|gb|EAZ63272.2| DNA topoisomerase II [Scheffersomyces stipitis CBS 6054]
Length = 1439
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 305/670 (45%), Positives = 398/670 (59%), Gaps = 125/670 (18%)
Query: 28 NKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKI 87
+K + + YQK SQLEHIL RPDTYIGSVE MW + ++ M +E++ VPGLYKI
Sbjct: 60 SKSNASETYQKLSQLEHILKRPDTYIGSVERTKMEMWSYDEASDEMVYKEVSIVPGLYKI 119
Query: 88 FDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGH 147
FDEILVNA DNK RDP M I++ ++ E NTI V N+G+GIP+ H+ EK+++P +IFG+
Sbjct: 120 FDEILVNAADNKIRDPTMKNIRVKIDPENNTIQVMNDGRGIPIEIHEKEKIYIPELIFGN 179
Query: 148 LLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVV 207
LLTSSNY+D +E KVTGGRNG+GAKLCNIFS++F +
Sbjct: 180 LLTSSNYDD-------------------------DEKKVTGGRNGFGAKLCNIFSTEFQL 214
Query: 208 ETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDL 266
ET+ + +KQ W NMS+VT P+I K +K ++TK++F PDL+KF M SLD++++ +
Sbjct: 215 ETADLNTELLYKQTWTGNMSQVTKPKITKLKTKKEYTKVSFRPDLSKFGMESLDEEILSV 274
Query: 267 ITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT--------DRQDEDGDPVK---I 315
+ RR YD + KD V+LN +KL V+NF+ YV++Y D E+ + K +
Sbjct: 275 LRRRVYDLCGTVKDCNVYLNDKKLNVRNFKSYVEMYVNAIKKRSPDTALEENNGTKYTTV 334
Query: 316 IYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDL 375
++E N RWE+A A SD F QVSFVNSIATT GG HV V D I+ +++E
Sbjct: 335 VHEVFNDRWELAFAVSDGSFNQVSFVNSIATTSGGTHVKYVSDQIINKLVE--------- 385
Query: 376 GCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTF 435
TL + +KP +V+N++++F+NCLI NP F
Sbjct: 386 ------------------------TLSKKEKGKKKLMIKPQEVRNNMFLFLNCLIENPAF 421
Query: 436 DSQTKENMTLQKGSFGS------------------TCV---------------------- 455
SQTKE +T + FG T +
Sbjct: 422 TSQTKEQLTTRVSQFGGKPSEKLVISDNFISKILKTSIVDKIRDIANANEDKALQKADGS 481
Query: 456 --------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKL 507
KL DAN AGT++ CTLILTEGDSA SLAVSGL VVGRD YG FPLRGKL
Sbjct: 482 KKSRIKGQVKLVDANKAGTRDGNKCTLILTEGDSALSLAVSGLAVVGRDYYGCFPLRGKL 541
Query: 508 LNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIK 567
LNVREA+ QI +N EIN L +I+GLQ+ K YT E+ KTLRYG +MIMTDQDQDGSHIK
Sbjct: 542 LNVREASADQIAKNTEINALKQIIGLQHKKVYTP-ENAKTLRYGHIMIMTDQDQDGSHIK 600
Query: 568 GLIINFIHHNWPTLLRLP-FLEEFITPIIKAT-----KAREELSFYSLPEFEEWKEETTN 621
GLIINF+ ++P LL +P FL EFITPIIK T +E + FY++PEFE W+E
Sbjct: 601 GLIINFLETSFPGLLNIPGFLLEFITPIIKVTIKKRGGGKEVIPFYNMPEFETWREREGG 660
Query: 622 WHTYKIKYYK 631
+ KYYK
Sbjct: 661 NSRWSHKYYK 670
Score = 124 bits (312), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 78/104 (75%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+P+IPM+LVNG+EGIGTGW T IP++NP ++VDNI+R++ GE MKPW+K +
Sbjct: 880 VEPEWYLPVIPMLLVNGSEGIGTGWSTNIPSYNPLDLVDNIRRLMNGEPMEEMKPWFKGW 939
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTL 763
+G I+ G ++ V G+I +D+ +EITE+ V WT + K+ L
Sbjct: 940 EGTIEPNGPDKYKVVGKIDQIDETTVEITEIPVKTWTNNVKEFL 983
Score = 66.6 bits (161), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 70/133 (52%), Gaps = 26/133 (19%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDA----------- 900
YDYLLGM+ WSLT ER +LL+++D+K ELN L KK+ DLW+ DLD
Sbjct: 1185 YDYLLGMSIWSLTRERYEKLLQQKDEKEHELNDLLKKSAKDLWNYDLDVFVEEWEKFLDA 1244
Query: 901 -LREKDKIHPCPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAPPPTKASPVK 959
L+E+ ++ P G +T ++TR +P+ + + ++ +D+ PP K +
Sbjct: 1245 DLQERMEMIPTKGTKKT-----AKRTR-KPAVKPIVKKE--------DDSEPPKKKAATN 1290
Query: 960 KKKPAAKRPAPKS 972
K K P K+
Sbjct: 1291 KSKSITPVPEIKA 1303
>gi|2501297|sp|P87078.1|TOP2_CANAL RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
II
gi|2113829|emb|CAA71405.1| topoisomerase II [Candida albicans]
Length = 1461
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 315/722 (43%), Positives = 411/722 (56%), Gaps = 150/722 (20%)
Query: 1 MSSDESDFDPDVQQNGNGPSPKKKTPANKMSVEK-------------------------- 34
MS ESD+ D ++ P+ KK T N S K
Sbjct: 1 MSESESDYFTDGSEDDFVPTSKKSTKKNASSKSKQPLGDATNSTVSSSRSSTPKPTNASE 60
Query: 35 IYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVN 94
YQK SQLEHIL RPDTYIGSVE MW + ET M +E+T VPGLYKIFDEILVN
Sbjct: 61 TYQKLSQLEHILKRPDTYIGSVEKTKTEMWCFDAETESMVFKEVTIVPGLYKIFDEILVN 120
Query: 95 ACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
A DNK RDP M I++ ++ E N I V N+GKGIP+ H E M++P +IF
Sbjct: 121 AADNKIRDPSMKNIRVKIDAENNIIEVMNDGKGIPIEMHTKENMYIPELIF--------- 171
Query: 155 NDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEY 214
G+LLTSSNY+D++ KVTGGRNG+GAKLCNIFS++F VET+
Sbjct: 172 ----------------GNLLTSSNYDDDQKKVTGGRNGFGAKLCNIFSTQFEVETADLNM 215
Query: 215 KKSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYD 273
K +KQ W +NMS V+ P+I + +K ++TKITF PDL+KF M LD D++ ++ RR YD
Sbjct: 216 GKLYKQSWTNNMSNVSKPKITTLRTKKEYTKITFRPDLSKFDMDCLDNDLLSVLRRRVYD 275
Query: 274 AAASTKDVKVFLNGEKLPVKNFQDYVKLYT--------DRQDEDG---DPVKIIYENVNP 322
+ K+ ++LN ++L + +F+ YV++Y + + +DG + I++E N
Sbjct: 276 LCGTVKNCNIYLNDKRLNISSFKGYVEMYVKAIKERSPEPEPQDGTIKNFTTIVHEVFND 335
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RWEVA A SD F QVSFVNSIATT GG HV V D I+ +++E
Sbjct: 336 RWEVAFAVSDGSFNQVSFVNSIATTSGGTHVKYVSDQIINKLVE---------------- 379
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
TL + +KP +V++++++FINCLI NP F SQTKE
Sbjct: 380 -----------------TLSKKEKGKKKLMIKPQEVRDNMFLFINCLIENPAFTSQTKEQ 422
Query: 443 MTLQKGSFG-----------------STCVPK---------------------------- 457
+T + FG ++ V K
Sbjct: 423 LTTKVSQFGGKDKFVANDNLINRILKTSIVDKIRAIANANEDKALQKADGSRKSRIKGQV 482
Query: 458 -LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
L DAN AGTK+ +CTLILTEG SA +LAV+GL VVGRD YG FPLRGKLLNVREA+
Sbjct: 483 NLVDANKAGTKDGHNCTLILTEGLSAMNLAVAGLSVVGRDYYGCFPLRGKLLNVREASAD 542
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI +NAEIN+L +I+GLQ+ K Y T E++K+LRYG +MIMTDQDQDGSHIKGLIINF+
Sbjct: 543 QISKNAEINSLKQIIGLQHKKVY-TAENIKSLRYGHIMIMTDQDQDGSHIKGLIINFLET 601
Query: 577 NWPTLLRLP-FLEEFITPIIKAT-KAR-----EELSFYSLPEFEEWKEETTNWHTYKIKY 629
++P LL +P FL EFITPI+K T KAR + FY++PEFE W++ + KY
Sbjct: 602 SFPGLLDIPGFLLEFITPIVKVTVKARGAGGKRVIPFYTMPEFEHWRDTEGKQCRWTQKY 661
Query: 630 YK 631
YK
Sbjct: 662 YK 663
Score = 129 bits (324), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 83/118 (70%), Gaps = 3/118 (2%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+P++PM+LVNGAEGIGTGW T IP++NP+++V NI+R++ GE+ M PWYK +
Sbjct: 873 VEPEWYLPVLPMILVNGAEGIGTGWSTNIPSYNPKDLVTNIRRLMNGEELQEMTPWYKGW 932
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDEVHP 777
G+++ G +F V+G I +D + +EITE+ V WT + K + LL G ++ P
Sbjct: 933 GGDLEPMGPQKFKVSGRIEQIDSNTVEITEIPVKTWTNNVK---EFLLSGFGNEKTQP 987
Score = 62.0 bits (149), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDA-LREKDKI 907
YDYLLGM WSLT ER ++++RD K ELN L K+ DLW+ DLD L E DK
Sbjct: 1180 YDYLLGMAIWSLTYERFMRIMQQRDQKEAELNALLSKSAKDLWNQDLDEFLAEFDKF 1236
>gi|448121442|ref|XP_004204208.1| Piso0_000036 [Millerozyma farinosa CBS 7064]
gi|358349747|emb|CCE73026.1| Piso0_000036 [Millerozyma farinosa CBS 7064]
Length = 1406
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 301/654 (46%), Positives = 396/654 (60%), Gaps = 120/654 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y++ SQLEHIL RPDTYIGSVE +W + E+ M ++ VPGLYKIFDEILVNA
Sbjct: 56 YKRLSQLEHILKRPDTYIGSVERSPMEIWSFDTESESMVFGTVSIVPGLYKIFDEILVNA 115
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP M IK+ ++ E N ISV N+GKGIPV HK EK+++P +IFG+LLTSSNY+
Sbjct: 116 ADNKIRDPNMKNIKVKIDAENNMISVMNDGKGIPVEIHKKEKIYIPELIFGNLLTSSNYD 175
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D +E KVTGGRNGYGAKLCNIFS+ FV+ET+
Sbjct: 176 D-------------------------DERKVTGGRNGYGAKLCNIFSTDFVLETADKNTG 210
Query: 216 KSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
++Q W DNMS+++ P++ K +K ++TK++F PDL KF M SLDKD + ++TRR YD
Sbjct: 211 LVYRQQWNDNMSRMSKPKVTKMKTKTEYTKVSFKPDLGKFGMDSLDKDTLAVLTRRVYDL 270
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYT----DR---QDEDGDPVKIIYENVNPRWEVA 327
+ K+ ++LN +K+ +K F++YV+LY DR Q D + ++YE +N RWEVA
Sbjct: 271 CGTVKNCNIYLNDKKIDIKGFKNYVQLYVKAIKDRSPAQFADNNKPTLVYEVINDRWEVA 330
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
A SD F QVSFVNSIATT GG HV + D IV ++ E + + +K
Sbjct: 331 FAVSDGVFNQVSFVNSIATTSGGSHVKYITDQIVNKLTENLTRGDKK------------- 377
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
+KP +KN++++F+NCLI NP F SQTKE++T +
Sbjct: 378 -----------------------SKIKPNDIKNNMFLFVNCLIENPAFTSQTKEHLTTKV 414
Query: 448 GSFG------------------STCV------------------------------PKLE 459
FG +T + KL
Sbjct: 415 SQFGGKKDDKVLVSSGFISKIMNTSIVDIIKAARSAREDIELQKADGSRKSRIKNQVKLV 474
Query: 460 DANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQIL 519
DAN AGTK CTLILTEGDSA SLAV+GL VVGR+ YG FPLRGKLLNVREA+ QI
Sbjct: 475 DANKAGTKEGHKCTLILTEGDSALSLAVAGLAVVGRNYYGCFPLRGKLLNVREASADQIG 534
Query: 520 ENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWP 579
+NAEIN L +I+GL++ Y ++E++K LRYG +MIMTDQD DGSHIKGLIINF+ ++P
Sbjct: 535 KNAEINALKQIIGLKHKVHY-SLENIKDLRYGHIMIMTDQDHDGSHIKGLIINFLDTSFP 593
Query: 580 TLLRLP-FLEEFITPIIKA-TKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
LL++P FL EFITPI+K K ++ LSFY++PEFE+W+E ++ KYYK
Sbjct: 594 GLLQIPGFLLEFITPIVKVFLKNKKVLSFYTMPEFEQWRETEGKTQRWRHKYYK 647
Score = 125 bits (313), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 74/106 (69%)
Query: 658 GRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYK 717
G +EPEWY+P++PMVLVNGAEGIGTGW T IP NP +IV NI+R++ GE+ +PM PW+K
Sbjct: 855 GTVEPEWYLPVLPMVLVNGAEGIGTGWSTNIPPFNPADIVQNIRRLMAGEEMIPMTPWFK 914
Query: 718 NFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTL 763
++GE +F V G I +D++ LEI+E+ W + K+ L
Sbjct: 915 GWEGETQPISQDKFKVMGTIEQIDNNTLEISEIPPKTWINNMKEFL 960
Score = 75.5 bits (184), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 73/140 (52%), Gaps = 23/140 (16%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDL------------D 899
YDYLLGMT WSLT ER +LL ++DDK ELNIL +K+ DLW++DL +
Sbjct: 1159 YDYLLGMTMWSLTKERYEKLLSQKDDKEKELNILLRKSAKDLWNEDLEDFMVSWEKFLQE 1218
Query: 900 ALREKDKIHPCPG----GNRTRGLALKRQTRYQPSNRVLTSRDE----PMVVSSGEDAPP 951
L + + P G RTR +Q++ +P + T+ + P+ +D P
Sbjct: 1219 DLENRSTLIPMKGTKKSAKRTR---TTKQSKQEPPKKKQTNEKKQQTLPVKSEPSDDLPT 1275
Query: 952 PTKASPVKKKKPAAKRPAPK 971
+AS +K KP A +PA +
Sbjct: 1276 FFEASSKEKSKPTAGKPAKR 1295
>gi|68480866|ref|XP_715586.1| DNA topoisomerase II [Candida albicans SC5314]
gi|68480977|ref|XP_715530.1| DNA topoisomerase II [Candida albicans SC5314]
gi|46437155|gb|EAK96506.1| DNA topoisomerase II [Candida albicans SC5314]
gi|46437215|gb|EAK96565.1| DNA topoisomerase II [Candida albicans SC5314]
Length = 1461
Score = 542 bits (1396), Expect = e-150, Method: Compositional matrix adjust.
Identities = 315/722 (43%), Positives = 410/722 (56%), Gaps = 150/722 (20%)
Query: 1 MSSDESDFDPDVQQNGNGPSPKKKTPANKMSVEK-------------------------- 34
MS ESD+ D ++ P+ KK T N S K
Sbjct: 1 MSESESDYFTDGSEDDFVPTSKKSTKKNASSKSKQPLGDATNSTVSSSRSSTPKPTNASE 60
Query: 35 IYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVN 94
YQK SQLEHIL RPDTYIGSVE MW + ET M +E+T VPGLYKIFDEILVN
Sbjct: 61 TYQKLSQLEHILKRPDTYIGSVEKTKTEMWCFDAETESMVFKEVTIVPGLYKIFDEILVN 120
Query: 95 ACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
A DNK RDP M I++ ++ E N I V N+GKGIP+ H E M++P +IF
Sbjct: 121 AADNKIRDPSMKNIRVKIDAENNIIEVMNDGKGIPIEMHTKENMYIPELIF--------- 171
Query: 155 NDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEY 214
G+LLTSSNY+D++ KVTGGRNG+GAKLCNIFS++F VET+
Sbjct: 172 ----------------GNLLTSSNYDDDQKKVTGGRNGFGAKLCNIFSTQFEVETADLNM 215
Query: 215 KKSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYD 273
K +KQ W +NMS V+ P+I + K ++TKITF PDL+KF M LD D++ ++ RR YD
Sbjct: 216 GKLYKQSWTNNMSNVSKPKITTLRPKKEYTKITFRPDLSKFDMDCLDNDLLSVLRRRVYD 275
Query: 274 AAASTKDVKVFLNGEKLPVKNFQDYVKLYT--------DRQDEDG---DPVKIIYENVNP 322
+ K+ ++LN ++L + +F+ YV++Y + + +DG + I++E N
Sbjct: 276 LCGTVKNCNIYLNDKRLNISSFKGYVEMYVKAIKERSPEPEPQDGTIKNFTTIVHEVFND 335
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RWEVA A SD F QVSFVNSIATT GG HV V D I+ +++E
Sbjct: 336 RWEVAFAVSDGSFNQVSFVNSIATTSGGTHVKYVSDQIINKLVE---------------- 379
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
TL + +KP +V++++++FINCLI NP F SQTKE
Sbjct: 380 -----------------TLSKKEKGKKKLMIKPQEVRDNMFLFINCLIENPAFTSQTKEQ 422
Query: 443 MTLQKGSFG-----------------STCVPK---------------------------- 457
+T + FG ++ V K
Sbjct: 423 LTTKVSQFGGKDKFVANDNLINRILKTSIVDKIRAIANANEDKALQKADGSRKSRIKGQV 482
Query: 458 -LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
L DAN AGTK+ +CTLILTEG SA +LAV+GL VVGRD YG FPLRGKLLNVREA+
Sbjct: 483 NLVDANKAGTKDGHNCTLILTEGLSAMNLAVAGLSVVGRDYYGCFPLRGKLLNVREASAD 542
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI +NAEIN+L +I+GLQ+ K Y T E++K+LRYG +MIMTDQDQDGSHIKGLIINF+
Sbjct: 543 QISKNAEINSLKQIIGLQHKKVY-TAENIKSLRYGHIMIMTDQDQDGSHIKGLIINFLET 601
Query: 577 NWPTLLRLP-FLEEFITPIIKAT-KAR-----EELSFYSLPEFEEWKEETTNWHTYKIKY 629
++P LL +P FL EFITPI+K T KAR + FY++PEFE W++ + KY
Sbjct: 602 SFPGLLDIPGFLLEFITPIVKVTVKARGAGGKRVIPFYTMPEFEHWRDTEGKQCRWTQKY 661
Query: 630 YK 631
YK
Sbjct: 662 YK 663
Score = 129 bits (324), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 83/118 (70%), Gaps = 3/118 (2%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+P++PM+LVNGAEGIGTGW T IP++NP+++V NI+R++ GE+ M PWYK +
Sbjct: 873 VEPEWYLPVLPMILVNGAEGIGTGWSTNIPSYNPKDLVTNIRRLMNGEELQEMTPWYKGW 932
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDEVHP 777
G+++ G +F V+G I +D + +EITE+ V WT + K + LL G ++ P
Sbjct: 933 GGDLEPMGPQKFKVSGRIEQIDSNTVEITEIPVKTWTNNVK---EFLLSGFGNEKTQP 987
Score = 62.0 bits (149), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDA-LREKDKI 907
YDYLLGM WSLT ER ++++RD K ELN L K+ DLW+ DLD L E DK
Sbjct: 1180 YDYLLGMAIWSLTYERFMRIMQQRDQKEAELNALLSKSAKDLWNQDLDEFLAEFDKF 1236
>gi|241955060|ref|XP_002420251.1| DNA topoisomerase 2, putative [Candida dubliniensis CD36]
gi|223643592|emb|CAX42474.1| DNA topoisomerase 2, putative [Candida dubliniensis CD36]
Length = 1461
Score = 542 bits (1396), Expect = e-150, Method: Compositional matrix adjust.
Identities = 314/722 (43%), Positives = 411/722 (56%), Gaps = 150/722 (20%)
Query: 1 MSSDESDFDPDVQQNGNGPSPKKKTPANKMSVEK-------------------------- 34
MS ESD+ D ++ P+ KK T N S +K
Sbjct: 1 MSDSESDYFTDGSEDDFVPTSKKSTKKNASSKQKQPLADATNSTVSSSRSSTPKPSNASE 60
Query: 35 IYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVN 94
YQK SQLEHIL RPDTYIGSVE MW + +T M +E+T VPGLYKIFDEILVN
Sbjct: 61 TYQKLSQLEHILKRPDTYIGSVEKTKTEMWCFDADTESMVFKEVTIVPGLYKIFDEILVN 120
Query: 95 ACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
A DNK RDP M I++ ++ E N I V N+GKGIPV H E M++P +IF
Sbjct: 121 AADNKIRDPSMKNIRVKIDAENNIIEVMNDGKGIPVEMHTKENMYIPELIF--------- 171
Query: 155 NDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEY 214
G+LLTSSNY+D E KVTGGRNG+GAKLCNIFS++F VET+
Sbjct: 172 ----------------GNLLTSSNYDDNEKKVTGGRNGFGAKLCNIFSTQFEVETADLNM 215
Query: 215 KKSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYD 273
K +KQ W +NMS V+ P+I + +K ++TKITF PDL+KF M LD D++ ++ RR YD
Sbjct: 216 GKLYKQSWTNNMSNVSKPKITTLKTKKEYTKITFRPDLSKFDMDCLDNDLLSVLRRRVYD 275
Query: 274 AAASTKDVKVFLNGEKLPVKNFQDYVKLYT--------DRQDEDG---DPVKIIYENVNP 322
+ K+ ++LN ++L + +F+ YV++Y + + +DG + I++E N
Sbjct: 276 LCGTVKNCNIYLNEKRLNISSFKSYVEMYVKAIKERSPEPEPQDGTIKNFTTIVHEVFND 335
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RWEVA A SD F QVSFVNSIATT GG HV V D I+ +++E
Sbjct: 336 RWEVAFAVSDGSFNQVSFVNSIATTSGGTHVKYVSDQIINKLVE---------------- 379
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
TL + +KP +V++++++FINCLI NP F SQTKE
Sbjct: 380 -----------------TLSKKEKGKKKLMIKPQEVRDNMFLFINCLIENPAFTSQTKEQ 422
Query: 443 MTLQKGSFG-----------------STCVPK---------------------------- 457
+T + FG ++ V K
Sbjct: 423 LTTKVSQFGGKDKFVANDNLINRILKTSIVEKIRAIANANEDKALQKADGSRKSRIKGQV 482
Query: 458 -LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
L DAN AGTK+ +CTLILTEG SA +LAV+GL VVGRD YG FPLRGKLLNVREA+
Sbjct: 483 NLVDANRAGTKDGHNCTLILTEGLSAMNLAVAGLSVVGRDYYGCFPLRGKLLNVREASAD 542
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI +N+EIN+L +I+GLQ+ K Y T E++K+LRYG +MIMTDQDQDGSHIKGLIINF+
Sbjct: 543 QIAKNSEINSLKQIIGLQHKKVY-TAENIKSLRYGHIMIMTDQDQDGSHIKGLIINFLET 601
Query: 577 NWPTLLRLP-FLEEFITPIIKAT-KAR-----EELSFYSLPEFEEWKEETTNWHTYKIKY 629
++P LL +P FL EFITPI+K T +AR + FY++PEFE W++ + KY
Sbjct: 602 SFPGLLDIPGFLLEFITPIVKVTVRARGAGGKRVIPFYTMPEFEHWRDTEGKQCRWTQKY 661
Query: 630 YK 631
YK
Sbjct: 662 YK 663
Score = 129 bits (324), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 83/118 (70%), Gaps = 3/118 (2%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+P++PM+LVNGAEGIGTGW T IP++NP+++V NI+R++ GE+ M PWYK +
Sbjct: 873 VEPEWYLPVLPMILVNGAEGIGTGWSTNIPSYNPKDLVANIRRLMNGEELQEMTPWYKGW 932
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDEVHP 777
G+++ G +F V+G I +D + +EITE+ V WT + K + LL G ++ P
Sbjct: 933 GGDLEPMGPQKFKVSGRIEQIDSNTVEITEIPVKTWTNNVK---EFLLSGFGNEKTQP 987
Score = 61.6 bits (148), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDA-LREKDKI 907
YDYLLGM WSLT ER +++++RD K ELN L K+ DLW+ DLD L E DK
Sbjct: 1180 YDYLLGMAIWSLTYERFMKIMQQRDQKEAELNALLSKSAKDLWNHDLDEFLVEFDKF 1236
>gi|399216022|emb|CCF72710.1| unnamed protein product [Babesia microti strain RI]
Length = 1309
Score = 542 bits (1396), Expect = e-150, Method: Compositional matrix adjust.
Identities = 298/658 (45%), Positives = 389/658 (59%), Gaps = 125/658 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
S+E+ YQKKSQLEHILLRPDTYIGSVE T+++W+ + ET+ M ++ +TYVPGLYKIFDE
Sbjct: 4 SIEERYQKKSQLEHILLRPDTYIGSVEKHTQSLWVFDDETSKMVQKTVTYVPGLYKIFDE 63
Query: 91 ILVNACDNKQRDP-------KMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTM 143
ILVNA D K R+ KM IK+ ++ T I VWN+G GIP+ HK+ ++V
Sbjct: 64 ILVNAADVKARESQRTDVVQKMTTIKVNIDSSTGEIYVWNDGDGIPIEIHKEHNIYV--- 120
Query: 144 IFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSS 203
HL IFGHLLTS NY+D E ++TGGRNG+GAKL NIFS
Sbjct: 121 --AHL--------------------IFGHLLTSDNYDDSEQRITGGRNGFGAKLANIFSK 158
Query: 204 KFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDM 263
KF V + K+ K W DNMS+ ++ ++++ S D+ +TF PD KF M LD+
Sbjct: 159 KFTVCCGDCKRKRELKMTWFDNMSRHSAVKVRNYSGKDYVSVTFLPDYEKFGMDGLDEGT 218
Query: 264 VDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPR 323
L+ +R YD A T VKVFLN ++PVKNF YV +Y D D V+I + + R
Sbjct: 219 ELLLKKRVYDIAG-TSGVKVFLNNNRIPVKNFTTYVDMYLGTND---DVVRI--SDSSER 272
Query: 324 WEVAIAPSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
W V + SD FQQVSFVNSI T KGG HV+ V++ +++ I + + KNK
Sbjct: 273 WSVVVTKSDGSQFQQVSFVNSICTIKGGSHVNYVIEPMIQAITKKINSKNK--------- 323
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
GGM +K VK+H+W+F+NCLI NP+FDSQTKE
Sbjct: 324 --------------------------GGMQVKVGHVKSHLWVFVNCLITNPSFDSQTKET 357
Query: 443 MTLQKGSFGS------TC------------------------------------------ 454
+T + FGS C
Sbjct: 358 LTTKPQKFGSKYMPSDKCINSILKSKIMDSVIAWARAKEQVELGRKLKVGNVKQTEKLLG 417
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+PKLEDA+ AGTK + +CTLILTEGDSAK+ ++GL VVGRD YGVFPL+GKLLNVREA+
Sbjct: 418 IPKLEDASKAGTKFASECTLILTEGDSAKTSCLAGLSVVGRDLYGVFPLKGKLLNVREAS 477
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
KQ+ +N EI +++KI+GL S K ++ K LRYG LMIMTDQD DGSHIKGL+IN I
Sbjct: 478 FKQLSQNVEIQHILKIMGLDVSNK--NLDTPKNLRYGSLMIMTDQDYDGSHIKGLLINLI 535
Query: 575 HHNWPTLLRL-PFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
H WP+LL+ FL +FITPIIKATK + SFY++ +F +WK+ + ++IKYYK
Sbjct: 536 HQFWPSLLKYRGFLRQFITPIIKATKGNIQTSFYTISDFNKWKDTVQDIRYWRIKYYK 593
Score = 108 bits (270), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 74/118 (62%), Gaps = 12/118 (10%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP +YIPI+PMVLVNG EGIGTG+ + IPN +P +I+ NIKR I E +PM PW+K F
Sbjct: 810 IEPIFYIPILPMVLVNGCEGIGTGFSSTIPNFSPFDIIANIKRYINDEMLIPMTPWFKGF 869
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLE------------ITELQVGKWTTDYKDTLDT 765
KG I + F V G+ +++ D + ITEL V KWT DYK+ L++
Sbjct: 870 KGSIIPNDRAGFDVVGKYDVVEYDVFDSKNGSVPVDIIRITELPVKKWTQDYKEFLES 927
Score = 45.8 bits (107), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 844 EEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
+E++ +YDYLL M W+LT ER ++L + L +LK +W DDL AL E
Sbjct: 1062 DEDEEKGEYDYLLSMQLWNLTKERVDKLNENHTQAGNLLEMLKGMTTKQMWLDDLRALEE 1121
>gi|115392233|gb|ABI96917.1| topoisomerase [Trypanosoma congolense]
gi|342186236|emb|CCC95722.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 1439
Score = 541 bits (1394), Expect = e-150, Method: Compositional matrix adjust.
Identities = 294/663 (44%), Positives = 387/663 (58%), Gaps = 123/663 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+VE+IYQKK+Q EHIL RPD YIG++EP+TE MW+ + M+ + T+ PGLYKIFDE
Sbjct: 5 TVEEIYQKKTQHEHILARPDMYIGTIEPVTEDMWVYDEADCVMKLQRCTWTPGLYKIFDE 64
Query: 91 ILVNACDNKQRDPK-MNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
ILVNA DNK RDP IK+ ++ E I V+NNG+GIPV H++ ++VP MIF
Sbjct: 65 ILVNAADNKVRDPHGQTAIKVWIDTERGVIRVYNNGEGIPVQRHREHDLWVPEMIF---- 120
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
GHLLTSSNY+D E KVTGGRNG+GAKL N+FS+ F +ET
Sbjct: 121 ---------------------GHLLTSSNYDDTEAKVTGGRNGFGAKLTNVFSTCFELET 159
Query: 210 SCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
S +K F W++NM + P I S D+T +TF PD KFK+ L +DM ++ R
Sbjct: 160 VHSRSRKKFFMRWRNNMLESEEPVITSCDGPDYTMVTFYPDFAKFKLQGLSEDMALIMKR 219
Query: 270 RAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAI 328
R YD A T K + +LNGEK+P ++F +YV LY E+ P Y VN RWEV +
Sbjct: 220 RVYDIAGCTEKSLSCYLNGEKIPCRSFAEYVDLYPT-MGEERRPGS--YSRVNDRWEVCV 276
Query: 329 APSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
S+ GFQQVSFVNSIATT+GG HV VV+ I+ ++ E +K+K
Sbjct: 277 RVSNIGFQQVSFVNSIATTRGGTHVKYVVEQIIAKVTEQAMRKSK--------------- 321
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
+KP ++ H+++F+NCLI NP+FDSQTKE + K
Sbjct: 322 ----------------------TEVKPHMIRPHMFVFVNCLIENPSFDSQTKETLNTPKT 359
Query: 449 SFGSTC---------------------------------------------VPKLEDAND 463
FGS C +PKL+DAN+
Sbjct: 360 RFGSVCDLPASLIDCVLKSSIVERAVEMANSKLSREMAMKLRNSNRKQVLGIPKLDDANE 419
Query: 464 AGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAE 523
AG KNS CTLILTEGDSAK+L +GL V RD +GVFPLRGK LNVR+A+ K+++ AE
Sbjct: 420 AGGKNSYRCTLILTEGDSAKALCTAGLAVENRDYFGVFPLRGKPLNVRDASIKKVMSCAE 479
Query: 524 INNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR 583
+ KI+GL ++KYT+VE LRYG LMIM+DQD DGSHIKGLIIN IH+ WP LL+
Sbjct: 480 FQAVSKIMGLDVTQKYTSVEG---LRYGHLMIMSDQDHDGSHIKGLIINMIHNYWPDLLK 536
Query: 584 LP-FLEEFITPIIKATKARE------ELSFYSLPEFEEWKEET-TNWHTYKIKYYKVVYV 635
+P FL++FITPI+KA K +SF+S+P++ EWK N Y+++YYK +
Sbjct: 537 VPGFLQQFITPIVKARKKSRGNGDEGAISFFSMPDYFEWKNAVGDNIKNYELRYYKGLGT 596
Query: 636 TGV 638
+G
Sbjct: 597 SGA 599
Score = 120 bits (302), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 74/107 (69%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP +Y+P+IPMVLVNG GIGTG+ T IPN++P +++DN++R++ G+D PMKPWY F
Sbjct: 806 VEPFYYVPVIPMVLVNGTAGIGTGFATNIPNYSPLDVIDNLRRLLSGDDLRPMKPWYFGF 865
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
G I+ +FV +G + D + ITEL +G WT+ YK L+ L
Sbjct: 866 TGTIEEREKGKFVSSGRYTVRPDGVVCITELPIGTWTSQYKKFLEDL 912
Score = 53.9 bits (128), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 18/178 (10%)
Query: 835 DDEAGSQTQEEEDPD-----KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKA 889
D+ GS E E P +DYDYLLG+ W+LT E LL + + + + K +
Sbjct: 1092 DELMGSSEGEGEAPALKRSARDYDYLLGLRLWNLTAEMSARLLAQLEAARAKYETIAKCS 1151
Query: 890 PTDLWSDDLDALR-EKDKIHPCPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGED 948
P DLW +DLD L+ E +K+ RT+ +A+ ++ + + SR ++S
Sbjct: 1152 PKDLWREDLDLLQPEMEKLF----DERTKEIAIIQRKKREKKRPFDCSRLRVPLLSD--- 1204
Query: 949 APPPTKASPVKKKKPAAKRPAPKSDSSDLSDSDGDSDFASRKKKTAAAKKAKPAKKES 1006
KA V +++ + + + + DG + A R + + + KK S
Sbjct: 1205 -----KAREVLRREVVKEEKKSGRGDASVKNEDGSATGAGRGARGNSGTARRKRKKRS 1257
>gi|156088413|ref|XP_001611613.1| DNA topoisomerase II [Babesia bovis T2Bo]
gi|154798867|gb|EDO08045.1| DNA topoisomerase II, putative [Babesia bovis]
Length = 1437
Score = 541 bits (1394), Expect = e-150, Method: Compositional matrix adjust.
Identities = 292/660 (44%), Positives = 400/660 (60%), Gaps = 124/660 (18%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYK 86
A + ++E+ YQKKSQLEHILLRPDTYIG+ E +T+ MW+ N+E M +T++PGLYK
Sbjct: 3 AKQKTIEQRYQKKSQLEHILLRPDTYIGNTEMLTQQMWVYNQEAKRMLYEPVTFIPGLYK 62
Query: 87 IFDEILVNACD---NKQRDP---KMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
IFDEILVNA D +Q DP +M CIK+ N T I+V+N+G+ IPV HK+ ++V
Sbjct: 63 IFDEILVNAADVHARQQSDPSLTRMTCIKVNFNATTGAITVFNDGEPIPVEIHKEHNVYV 122
Query: 141 PTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNI 200
P MIFG LLTS NY +DE+ ++TGGRNG+GAKL NI
Sbjct: 123 PEMIFGELLTSDNY-------------------------DDEDGRITGGRNGFGAKLTNI 157
Query: 201 FSSKFVVETSCSEYKKSFKQVWKDNMSKVTSP-EIKSGSKDDFTKITFTPDLTKFKMTSL 259
FS F V + S+ K F W+ NM++V SP ++ S DF K+TF PD +F + ++
Sbjct: 158 FSKSFSVTCADSKRHKQFAMKWESNMTRVASPAKVGSYHGKDFVKVTFIPDYERFGIPTM 217
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYEN 319
D+ + ++ +R YD A +T ++V+ N E+L + +F+ YV LY ED V +Y+
Sbjct: 218 DEGTLKVLLKRVYDVAGTT-GLRVYWNDERLGISDFKQYVGLYF----EDDPTVVKVYDK 272
Query: 320 VNPRWEVAIAPSD-RGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCT 378
+ RWEV ++ +D GFQQVSFVN+I T KGG HV V++ +V + VK KNKD
Sbjct: 273 AH-RWEVMVSATDGSGFQQVSFVNNITTLKGGSHVQHVLEPLVTALTNKVKSKNKD---- 327
Query: 379 IIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQ 438
G+ LKP+Q+KN+I++F+NC IVNPTFDSQ
Sbjct: 328 -------------------------------GVELKPYQIKNYIFLFVNCQIVNPTFDSQ 356
Query: 439 TKENMTLQKGSFGS---------------------------------------------- 452
TKE +T + FGS
Sbjct: 357 TKETLTTKPAKFGSKYIMNPKAVAQILKSTLTERILSFAQGRLNIELKKKMKVTKAVNRL 416
Query: 453 TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVRE 512
T +PKLEDAN+AGT+++ +CTLILTEGDSAK+ ++GL VVGRD YGVFPL+GKLLNVR+
Sbjct: 417 TGIPKLEDANNAGTRHARNCTLILTEGDSAKTSCLAGLSVVGRDNYGVFPLKGKLLNVRD 476
Query: 513 ATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIIN 572
A++KQ+++NAEI N++KI+GL SKK T D LRYG +MIMTDQD DGSHIKGL+IN
Sbjct: 477 ASYKQLVQNAEIQNILKIMGLDVSKKEQTTPD--GLRYGSIMIMTDQDYDGSHIKGLLIN 534
Query: 573 FIHHNWPTLLRL-PFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+H+ WP +++ F+ EF+TPIIKATK LSF+++ ++ W ++TN +KIKYYK
Sbjct: 535 LLHYFWPKMIQCRGFIREFVTPIIKATKGDSVLSFFTVQDYVRWV-QSTNVAGWKIKYYK 593
Score = 119 bits (299), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/116 (50%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP +YIP IPMVLVNG+EGIGTG+ ++IPN+NP +I+DN+KR + D PM PWY F
Sbjct: 803 IEPMYYIPTIPMVLVNGSEGIGTGFSSQIPNYNPLDIIDNLKRYLNNVDMKPMVPWYHKF 862
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDK-LEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
GEI+ F G LD++ LEITEL + KWT DY+ L++L G E
Sbjct: 863 TGEIEPNDKGGFDCLGNYQWLDENGLLEITELPIRKWTHDYRVFLESLEQGVNGKE 918
Score = 53.9 bits (128), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 19/149 (12%)
Query: 845 EEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD----- 899
++ P DY+YLL M WSLT+E+ +L ++ K +L IL + TD+W DDL+
Sbjct: 1078 QDAPGADYNYLLNMPLWSLTLEQVQKLNEEHAQKENQLRILLETTATDMWMDDLNKVEVA 1137
Query: 900 ---ALREKDKIHPCPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAPPPTKAS 956
A ++ + P P AL + T+ + R + +PP ++ +
Sbjct: 1138 IKMAYQQDEITAPTPS-----HAALMQLTKIK---RKASQSQRSTATPKATQSPPSSRGN 1189
Query: 957 PVKKKKPAAKRPAPKSDSSD---LSDSDG 982
+ +K S+ SD LSD +G
Sbjct: 1190 STSRSNKRSKYSDSSSEFSDVSMLSDDEG 1218
>gi|340521765|gb|EGR51999.1| predicted protein [Trichoderma reesei QM6a]
Length = 1619
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 296/674 (43%), Positives = 384/674 (56%), Gaps = 134/674 (19%)
Query: 19 PSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREI 78
P+ KKKT + YQK +QLEHI+ RPDTYIGSVE + MW+ N+ET ME R I
Sbjct: 111 PASKKKT------ATETYQKLTQLEHIIKRPDTYIGSVEKTDQQMWVYNKETKQMEYRNI 164
Query: 79 TYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKM 138
TYVPG YKIFDEILVNA DNKQRD MN +K+T+++E+ ISV NNGKGIP+V H+ E++
Sbjct: 165 TYVPGFYKIFDEILVNAADNKQRDSSMNMMKVTIDRESGEISVENNGKGIPIVMHEKERV 224
Query: 139 FVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLC 198
++P +IFGHLL SN ++D E K GGRNGYGAKLC
Sbjct: 225 YIPELIFGHLLAGSN-------------------------FDDTEKKTVGGRNGYGAKLC 259
Query: 199 NIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKM-T 257
N+FS++F +E SE K +KQ W +NM + +I S DF ++TF PD +F M
Sbjct: 260 NVFSTEFTLECQDSENGKRYKQQWTNNMQTMHKAKITSNKSSDFVRVTFKPDYARFGMEE 319
Query: 258 SLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD------RQDEDGD 311
+ D+ L+ RR YD A + + VKV LNGE + +K+F+ Y LY +E G+
Sbjct: 320 GITDDLEALLYRRVYDMAGTMRGVKVQLNGELIKIKDFKSYCDLYAKSIAGERSMEEGGN 379
Query: 312 P---VKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVV 368
P V+I + +PRWE+ SD FQQVSFVNSIATT GG HV+ + D I +++ V
Sbjct: 380 PTCTVEIDKDKGHPRWEIGFTVSDGTFQQVSFVNSIATTSGGTHVNYIADQITAYLLKAV 439
Query: 369 KKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINC 428
K K G LKP ++NHI+IF+NC
Sbjct: 440 TKLKK------------------------------------GHGLKPAHLRNHIFIFVNC 463
Query: 429 LIVNPTFDSQTKENMTLQKGSFGSTCV--------------------------------- 455
LI NP F SQTKE MT + FGS CV
Sbjct: 464 LIDNPAFTSQTKEQMTTKASQFGSKCVLGDDFLKKVAKSDAIKNIMDFAERKADKMMAKS 523
Query: 456 ----------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRG 505
KL +AN AGT+ +CTLILTEGDSAK LAVSG ++ D+ GVFPLRG
Sbjct: 524 DGNKRSRVSNAKLVEANLAGTRRGHECTLILTEGDSAKGLAVSGRAILDPDRIGVFPLRG 583
Query: 506 KLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSH 565
KLLNVR+A+ QI +N EI N+ + LGL++ + YT D K+LRYG LMIM DQD DGSH
Sbjct: 584 KLLNVRDASIDQITKNQEIQNIKQFLGLKHKQVYT---DTKSLRYGHLMIMADQDHDGSH 640
Query: 566 IKGLIINFIHHNWPTLLRLP-FLEEFITPIIKA------TKAREELSFYSLPEFEEWKE- 617
IKGL+INF+ +P+LL++P F EFITPI+K K + SF++ P++EEWK+
Sbjct: 641 IKGLLINFLQVQFPSLLQIPDFFREFITPIVKVWQGPNPKKPQRLKSFFTQPQYEEWKQE 700
Query: 618 ---ETTNWHTYKIK 628
E + WH +K
Sbjct: 701 RGSEISRWHYKYLK 714
Score = 105 bits (261), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 80/124 (64%), Gaps = 12/124 (9%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIK-RMIRGED------PL- 710
+IEPE Y PI+PMVL+NGA+GIGTGW T IPN++P E+V N+K RM R ED P
Sbjct: 923 QIEPEVYAPILPMVLINGADGIGTGWSTSIPNYHPLEVVKNLKRRMGRLEDGDDEEKPFE 982
Query: 711 PMKPWYKNFKGEIDYCGDSRFVVNGEIAILDD---DKLEITELQVGKWTTDYKDTLDTLL 767
M PW++ +KG + G R+ NG IA ++ +++ ITEL + WT D+K L+ ++
Sbjct: 983 TMTPWFRGWKGTPEAAGPDRYKFNG-IAYQNEQNPNEVVITELPIRVWTDDFKARLEKII 1041
Query: 768 HGAE 771
G +
Sbjct: 1042 SGVD 1045
Score = 48.1 bits (113), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
+DYDYLL M WSLT ER +L K E + L+ K+ DLW +DL A
Sbjct: 1207 RDYDYLLSMPIWSLTAERLEKLKDAIRRKKAEYDELEAKSEKDLWCEDLAAF 1258
>gi|408399894|gb|EKJ78984.1| hypothetical protein FPSE_00841 [Fusarium pseudograminearum CS3096]
Length = 1652
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 296/676 (43%), Positives = 387/676 (57%), Gaps = 133/676 (19%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
SP K PA + + ++Y K +QL+HIL RPDTYIGSVE + +W++N+ET ME + I
Sbjct: 93 SPAK--PAKQKTATEMYTKLTQLQHILKRPDTYIGSVERTEQQLWVLNKETQLMEYKAIN 150
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
+VPGLYKIFDEILVNA DNKQRD M +KI +++E ISV NNGKGIP+V H+ E ++
Sbjct: 151 FVPGLYKIFDEILVNAADNKQRDSSMTYMKINIDREAGVISVENNGKGIPIVLHEKENIY 210
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCN 199
+P +IFGHLL SN ++D+E K GGRNGYGAKLCN
Sbjct: 211 IPELIFGHLLAGSN-------------------------FDDDEKKTVGGRNGYGAKLCN 245
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKM-TS 258
+FS++F +E S K +KQ W DNM+ + +I + +T+ITF PD +F M
Sbjct: 246 VFSTEFNLECQDSVSGKKYKQTWTDNMNTMHKAKITASKSASYTRITFKPDFKRFGMEDG 305
Query: 259 LDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDGDP- 312
+D D+ L+ RR YD + + +KVFLNGE++ +K+F+ Y LY DR DE+G
Sbjct: 306 IDDDLESLMYRRVYDMVGTIRGIKVFLNGEQVKIKDFKAYCDLYAKSIAKDRLDEEGGSP 365
Query: 313 ---VKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVK 369
V++ + +PRWEV A SD FQQVSFVNSIATT GG HV+ + D I K ++ +
Sbjct: 366 ICTVEMDKDKSHPRWEVGFAVSDGTFQQVSFVNSIATTAGGTHVNYIADQITKSLLNTLN 425
Query: 370 KKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCL 429
KK K G LK ++NHI++FINC
Sbjct: 426 KKRK------------------------------------GHTLKQNHLRNHIFVFINCY 449
Query: 430 IVNPTFDSQTKENMTLQKGSFGSTCV---------------------------------- 455
I NP F SQTKE MT + FGS C
Sbjct: 450 IDNPAFSSQTKEQMTTKASQFGSKCALGDEFLKKVAKSDAIQNILDMAEKKADKMMAKSD 509
Query: 456 ---------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGK 506
KL +AN AGT+ +CTLILTEGDSAK LAVSG ++ D+ GVFPLRGK
Sbjct: 510 GNKRSRVNNAKLVEANFAGTRRGHECTLILTEGDSAKGLAVSGRAILDPDRIGVFPLRGK 569
Query: 507 LLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHI 566
LLNVR+A+ QI +N EI N+ + LGL++ YT D K LRYG LMIM DQD DGSHI
Sbjct: 570 LLNVRDASPDQIAKNQEIQNIKQFLGLKHKTSYT---DTKNLRYGHLMIMADQDHDGSHI 626
Query: 567 KGLIINFIHHNWPTLLRLP-FLEEFITPIIKA------TKAREELSFYSLPEFEEWKE-- 617
KGL+INF+ +P+LLR+P F EFITPI+K K ++ SF++ PE+EEWK+
Sbjct: 627 KGLLINFLEVQFPSLLRIPDFFREFITPIVKVWQGPNPKKPQKLKSFFTQPEYEEWKDVH 686
Query: 618 --ETTNWHTYKIKYYK 631
E T WH+ KY+K
Sbjct: 687 KNELTRWHS---KYFK 699
Score = 99.8 bits (247), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 76/122 (62%), Gaps = 12/122 (9%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMI-------RGEDPL- 710
+IEP Y PI+PMVLVNGA+GIGTGW + IPN++P +IV N++R + E P
Sbjct: 908 KIEPMVYAPILPMVLVNGADGIGTGWSSNIPNYHPADIVHNLRRRMGRLDENDTEEKPFE 967
Query: 711 PMKPWYKNFKGEIDYCGDSRFVVNGEIAILD---DDKLEITELQVGKWTTDYKDTLDTLL 767
M PW++ +KG + G R+ NG +A + D+++ ITEL + WT D+K L+ ++
Sbjct: 968 TMMPWFRGWKGTPEAAGPDRYKFNG-VAYANEQKDNEIVITELPIRVWTDDFKAKLEKVI 1026
Query: 768 HG 769
G
Sbjct: 1027 SG 1028
Score = 49.7 bits (117), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 68/171 (39%), Gaps = 22/171 (12%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL-------- 901
+DYDYLL M WSLT ER +L + + K E L + DLW DLD
Sbjct: 1197 RDYDYLLSMPIWSLTAERLEKLKQAIEKKKAEHEELLALSEKDLWCRDLDDFMTEWENQL 1256
Query: 902 -----------REKDKIHPCPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAP 950
R ++ G RG K Y P + +V +
Sbjct: 1257 AVDAEIKTNIRRLGRRVSKKIGAGTARGRKAKDDDEYAPEKKARAKAKAAVVKPVKVETK 1316
Query: 951 PPTKASPVKKKKPAAKRPAPKSDSSDLSDSDGDSDFA--SRKKKTAAAKKA 999
+ + + KP K+ P +D +LSD+ D D+A SR K +A A KA
Sbjct: 1317 SAQRFAEMFSSKPKVKK-EPTADVMELSDAFSDDDYAALSRGKSSAPAMKA 1366
>gi|398409176|ref|XP_003856053.1| hypothetical protein MYCGRDRAFT_98287 [Zymoseptoria tritici IPO323]
gi|339475938|gb|EGP91029.1| hypothetical protein MYCGRDRAFT_98287 [Zymoseptoria tritici IPO323]
Length = 1677
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 303/667 (45%), Positives = 397/667 (59%), Gaps = 122/667 (18%)
Query: 24 KTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPG 83
K PA K YQ+ +QLEHIL RPDTYIGSVE TE MW+ N ET ME R++++VPG
Sbjct: 107 KAPAKKGGASDQYQRLTQLEHILKRPDTYIGSVERTTEQMWVFNSETEVMENRKVSFVPG 166
Query: 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTM 143
LYKIFDEILVNA DNKQRD M +++ VN+E ISV NNG+GIP+ H E +++P M
Sbjct: 167 LYKIFDEILVNAADNKQRDKNMTEMRVWVNREQGCISVRNNGRGIPIEMHAKEGIYIPEM 226
Query: 144 IFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSS 203
IFGHLLT SNY +D++ K TGGRNGYGAKL NI+S+
Sbjct: 227 IFGHLLTGSNY-------------------------DDDQAKTTGGRNGYGAKLANIYST 261
Query: 204 KFVVETSCSEYKKSFKQVWKDNMS---KVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLD 260
+F ++T + K+ ++QVWK+NMS K ++KSG DD+T+ITF PD KF M +D
Sbjct: 262 EFELDTVDMKTKQRYRQVWKNNMSVMGKANIGKVKSG--DDYTQITFKPDFRKFGMDQMD 319
Query: 261 KDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-----TDRQDEDGD-PVK 314
D L+ RR YD A + K +KV+LN ++ + F+ Y+++Y T+ +GD P +
Sbjct: 320 DDFEALVKRRVYDMAGTVKGLKVYLNDTRIKISKFKQYMEMYTKAIKTENAANNGDAPEQ 379
Query: 315 IIY-ENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNK 373
+I ++ + RWE+ A SD FQQVSFVNSIATT GG HV+ + D I ++ E V KK
Sbjct: 380 VILTDSPHERWEIGFAVSDGSFQQVSFVNSIATTHGGSHVNYIADQICDKLEEHVNKK-- 437
Query: 374 DLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNP 433
KNN+ GG+ LK Q+KNHI++F+N IVNP
Sbjct: 438 -----------------KNNQ--------------GGVKLKKAQIKNHIFLFVNSQIVNP 466
Query: 434 TFDSQTKENMTLQKGSFGS----------------------------------------- 452
F SQTKE +T + SFGS
Sbjct: 467 AFTSQTKEQLTTKVSSFGSKPQVSEKFLKDILKTEAVSNIIHFAQQKADKLLSKSDGNRR 526
Query: 453 --TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNV 510
KL DAN AGTK+ CTLILTEGDSA LA++G VV D +GVFPLRGK+LNV
Sbjct: 527 TRMNNSKLTDANKAGTKDGHRCTLILTEGDSAALLALAGRAVVNPDHFGVFPLRGKILNV 586
Query: 511 REATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLI 570
R+A+ QI +NAEI N+ K LGLQ+ K+YT D K+LRYG LMIMTDQD DGSHIKGL+
Sbjct: 587 RDASVDQISKNAEIQNIKKFLGLQHKKEYT---DAKSLRYGHLMIMTDQDHDGSHIKGLL 643
Query: 571 INFIHHNWPTLLRLP-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHT 624
INF+ +P+LL++P FL EFITPI+K K + + F+++PE+E W++E N
Sbjct: 644 INFLQVQFPSLLKIPEFLLEFITPIVKVWKGDPKNPKAKRDFFTMPEYEAWRQEPGNQKG 703
Query: 625 YKIKYYK 631
+ KY+K
Sbjct: 704 WDHKYFK 710
Score = 120 bits (300), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 78/116 (67%), Gaps = 4/116 (3%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRG---EDPLPMKPWY 716
IEPE YIPI+PM+L+NGA+GIGTGW T IPN+ P E++ N+KR + G E +PM PW+
Sbjct: 921 IEPEMYIPIVPMILINGADGIGTGWSTSIPNYRPEEVIANLKRRMDGDSKESMVPMMPWF 980
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
+ + G + D R+ G+I +++EITEL V WT D+KD L+ +L AEK
Sbjct: 981 RGWTGVTEQLADERYKFGGKIRKSGPNEVEITELPVRYWTQDFKDKLEEILK-AEK 1035
Score = 63.9 bits (154), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 52/108 (48%), Gaps = 25/108 (23%)
Query: 794 KIDDDSEEEEIEEVFHDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYD 853
K+ D +E E E V +N +A + ED AG+ DYD
Sbjct: 1172 KVTDARKEGEFEAVVQEN----------------HEADDDEDTAAGAS---------DYD 1206
Query: 854 YLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
YLLGM WSLT ER +L+++ DK E+ +L K+ DLW DLD L
Sbjct: 1207 YLLGMAIWSLTQERVEKLMRQIGDKEDEITVLTSKSAQDLWKTDLDEL 1254
>gi|46136571|ref|XP_389977.1| hypothetical protein FG09801.1 [Gibberella zeae PH-1]
Length = 1650
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 296/676 (43%), Positives = 387/676 (57%), Gaps = 133/676 (19%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
SP K PA + + ++Y K +QL+HIL RPDTYIGSVE + +W++N+ET ME + I
Sbjct: 93 SPAK--PAKQKTATEMYTKLTQLQHILKRPDTYIGSVERTEQQLWVLNKETQLMEYKAIN 150
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
+VPGLYKIFDEILVNA DNKQRD M +KI +++E ISV NNGKGIP+V H+ E ++
Sbjct: 151 FVPGLYKIFDEILVNAADNKQRDSSMTYMKINIDREAGVISVENNGKGIPIVLHEKENIY 210
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCN 199
+P +IFGHLL SN ++D+E K GGRNGYGAKLCN
Sbjct: 211 IPELIFGHLLAGSN-------------------------FDDDEKKTVGGRNGYGAKLCN 245
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKM-TS 258
+FS++F +E S K +KQ W DNM+ + +I + +T+ITF PD +F M
Sbjct: 246 VFSTEFNLECQDSVSGKKYKQTWTDNMNTMHKAKITASKSASYTRITFKPDFKRFGMEDG 305
Query: 259 LDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDGDP- 312
+D D+ L+ RR YD + + +KVFLNGE++ +K+F+ Y LY DR DE+G
Sbjct: 306 IDDDLESLMYRRVYDMVGTIRGIKVFLNGEQVKIKDFKAYCDLYAKSIAKDRLDEEGGSP 365
Query: 313 ---VKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVK 369
V++ + +PRWEV A SD FQQVSFVNSIATT GG HV+ + D I K ++ +
Sbjct: 366 TCTVEMDKDKSHPRWEVGFAVSDGTFQQVSFVNSIATTAGGTHVNYIADQITKSLLNTLN 425
Query: 370 KKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCL 429
KK K G LK ++NHI++FINC
Sbjct: 426 KKRK------------------------------------GHTLKQNHLRNHIFVFINCY 449
Query: 430 IVNPTFDSQTKENMTLQKGSFGSTCV---------------------------------- 455
I NP F SQTKE MT + FGS C
Sbjct: 450 IDNPAFSSQTKEQMTTKASQFGSKCTLGDDFLKKVAKSDAIQNILDMAEKKADKMMAKSD 509
Query: 456 ---------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGK 506
KL +AN AGT+ +CTLILTEGDSAK LAVSG ++ D+ GVFPLRGK
Sbjct: 510 GNKRSRVNNAKLVEANFAGTRRGHECTLILTEGDSAKGLAVSGRAILDPDRIGVFPLRGK 569
Query: 507 LLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHI 566
LLNVR+A+ QI +N EI N+ + LGL++ YT D K LRYG LMIM DQD DGSHI
Sbjct: 570 LLNVRDASPDQIAKNQEIQNIKQFLGLKHKTSYT---DTKNLRYGHLMIMADQDHDGSHI 626
Query: 567 KGLIINFIHHNWPTLLRLP-FLEEFITPIIKA------TKAREELSFYSLPEFEEWKE-- 617
KGL+INF+ +P+LLR+P F EFITPI+K K ++ SF++ PE+EEWK+
Sbjct: 627 KGLLINFLEVQFPSLLRIPDFFREFITPIVKVWQGPNPKKPQKLKSFFTQPEYEEWKDVH 686
Query: 618 --ETTNWHTYKIKYYK 631
E T WH+ KY+K
Sbjct: 687 KNELTRWHS---KYFK 699
Score = 100 bits (248), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 76/122 (62%), Gaps = 12/122 (9%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMI-------RGEDPL- 710
+IEP Y PI+PMVLVNGA+GIGTGW + IPN++P +IV N++R + E P
Sbjct: 908 KIEPMVYAPILPMVLVNGADGIGTGWSSNIPNYHPADIVQNLRRRMGRLDENDTEEKPFE 967
Query: 711 PMKPWYKNFKGEIDYCGDSRFVVNGEIAILD---DDKLEITELQVGKWTTDYKDTLDTLL 767
M PW++ +KG + G R+ NG +A + D+++ ITEL + WT D+K L+ ++
Sbjct: 968 TMMPWFRGWKGTPEAAGPDRYKFNG-VAYANEQKDNEIVITELPIRVWTDDFKAKLEKVI 1026
Query: 768 HG 769
G
Sbjct: 1027 SG 1028
Score = 48.9 bits (115), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 68/171 (39%), Gaps = 22/171 (12%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL-------- 901
+DYDYLL M WSLT ER +L + + K E L + DLW DLD
Sbjct: 1197 RDYDYLLSMPIWSLTAERLEKLKQAIEKKKAEHEELLALSEKDLWCRDLDDFMTEWENQL 1256
Query: 902 -----------REKDKIHPCPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAP 950
R ++ G RG K Y P + +V +
Sbjct: 1257 AVDAEIKTNIRRLGRRVSKKIGAGTARGRKAKDDDEYAPEKKARAKAKVAVVKPVKVETK 1316
Query: 951 PPTKASPVKKKKPAAKRPAPKSDSSDLSDSDGDSDFA--SRKKKTAAAKKA 999
+ + + KP K+ P +D +LSD+ D D+A SR K +A A KA
Sbjct: 1317 SAQRFAEMFSSKPKVKK-EPTADVMELSDAFSDDDYAALSRGKSSAPAMKA 1366
>gi|358393929|gb|EHK43330.1| hypothetical protein TRIATDRAFT_225747 [Trichoderma atroviride IMI
206040]
Length = 1677
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 295/674 (43%), Positives = 380/674 (56%), Gaps = 134/674 (19%)
Query: 19 PSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREI 78
P+ KKKT + YQK +QLEHI+ RPDTYIGSVE + MW+ N+E+ ME R I
Sbjct: 110 PAGKKKTAT------ETYQKLTQLEHIIKRPDTYIGSVEKTDQQMWVYNKESKQMEYRNI 163
Query: 79 TYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKM 138
TYVPG YKIFDEILVNA DNKQRD M+ +K+ +++ + ISV NNGKGIP+V H+ EK+
Sbjct: 164 TYVPGFYKIFDEILVNAADNKQRDSSMSMMKVNIDRTSGEISVENNGKGIPIVMHEKEKV 223
Query: 139 FVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLC 198
++P +IFGHLL SN ++D E K GGRNGYGAKLC
Sbjct: 224 YIPELIFGHLLAGSN-------------------------FDDNEKKTVGGRNGYGAKLC 258
Query: 199 NIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKM-T 257
N+FS++F +E SE+ K +KQ W DNM + +I S DF ++TF PD +F M
Sbjct: 259 NVFSTEFTLECQDSEHAKRYKQTWTDNMQAMQKAKIASNKTSDFVRVTFKPDYRRFGMEE 318
Query: 258 SLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR------QDEDGD 311
+ D+ L+ RR YD A + + VKV LNGE + + NF+ Y LY Q+E G+
Sbjct: 319 GITDDLEALLYRRVYDLAGTMRGVKVQLNGELIKINNFKAYCDLYAKSIAGERGQEEGGN 378
Query: 312 P---VKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVV 368
P V+I + +PRWEV SD FQQVSFVNSIATT GG HV + D I +++ V
Sbjct: 379 PTCTVEIDKDKSHPRWEVGFTVSDGTFQQVSFVNSIATTSGGTHVSYIADQITASLLKAV 438
Query: 369 KKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINC 428
K K G LKP ++NHI+IF+NC
Sbjct: 439 TKLKK------------------------------------GHGLKPAHLRNHIFIFVNC 462
Query: 429 LIVNPTFDSQTKENMTLQKGSFGSTCV--------------------------------- 455
I NP F SQTKE MT + FGS CV
Sbjct: 463 FIDNPAFTSQTKEQMTTKTSQFGSRCVLGEDFLKKVAKSDAIQNIMAFAEKKADKMMAKS 522
Query: 456 ----------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRG 505
KL +AN AGT+ +CTLILTEGDSAK LAVSG ++ D+ GVFPLRG
Sbjct: 523 DGNKRSRVSNAKLVEANLAGTRRGHECTLILTEGDSAKGLAVSGRAILDPDRIGVFPLRG 582
Query: 506 KLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSH 565
KLLNVR+A+ QI +N EI N+ + LGL++ + YT D K LRYG LMIM DQD DGSH
Sbjct: 583 KLLNVRDASIDQITKNQEIQNIKQFLGLKHKQTYT---DTKNLRYGHLMIMADQDHDGSH 639
Query: 566 IKGLIINFIHHNWPTLLRLP-FLEEFITPIIKA------TKAREELSFYSLPEFEEWKE- 617
IKGL+INF+ +P+LL++P F EFITPI+K K + SF++ P++EEWK+
Sbjct: 640 IKGLLINFLQVQFPSLLQIPDFFREFITPIVKVWQGPNPKKPQRLKSFFTQPQYEEWKQE 699
Query: 618 ---ETTNWHTYKIK 628
E + WH +K
Sbjct: 700 RGGEVSRWHYKYLK 713
Score = 105 bits (261), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 78/124 (62%), Gaps = 12/124 (9%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMI-------RGEDPL- 710
+IEPE + P++PMVLVNGA+GIGTGW T IPN++P EIV N+KR + E P
Sbjct: 922 QIEPEVFAPVLPMVLVNGADGIGTGWSTSIPNYHPLEIVKNLKRRMGRLEEDDSEEKPFE 981
Query: 711 PMKPWYKNFKGEIDYCGDSRFVVNGEIAILDD---DKLEITELQVGKWTTDYKDTLDTLL 767
M PW++ +KG + G R+ NG IA D+ +++ ITEL + WT D+K L+ ++
Sbjct: 982 TMTPWFRGWKGAPEAAGQDRYKFNG-IAYQDEKNPNEVVITELPIRVWTDDFKARLEKII 1040
Query: 768 HGAE 771
G +
Sbjct: 1041 SGVD 1044
Score = 47.0 bits (110), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDL 898
+DYDYLL M WSLT ER +L + K E + L K+ DLW +DL
Sbjct: 1206 RDYDYLLSMPIWSLTAERLEKLKEAIRKKKAEYDELNAKSDKDLWCEDL 1254
>gi|452983146|gb|EME82904.1| hypothetical protein MYCFIDRAFT_164213 [Pseudocercospora fijiensis
CIRAD86]
Length = 1278
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 296/652 (45%), Positives = 387/652 (59%), Gaps = 119/652 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y+K +QLEHIL RPDTYIGSVE TE MW+ N ET ME R++T+VPGLYKIFDEILVNA
Sbjct: 16 YEKLTQLEHILKRPDTYIGSVEQTTEQMWVYNSETESMENRKVTFVPGLYKIFDEILVNA 75
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQRD MN +++ V+ E ISV NNGKGIP+ H E +++P MIFGHLLTSSNY
Sbjct: 76 ADNKQRDKNMNELRVWVDAEKGVISVKNNGKGIPIEMHTKEGIWIPEMIFGHLLTSSNY- 134
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
+D E K TGGRNGYGAKL NI+S++F ++T S+ K
Sbjct: 135 ------------------------DDNEAKTTGGRNGYGAKLTNIYSTQFELDTVDSKSK 170
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
+ ++Q W+ NMS + +I DD+T++TF PD +KF M +D D L+ RR YD A
Sbjct: 171 QRYRQTWRKNMSVMEKAKIDKVKVDDYTQVTFRPDFSKFGMEKMDADFEALVKRRVYDMA 230
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDR-------QDEDGDPVKIIYENVNPRWEVAI 328
+ K VKV+LNGE++ + F+ Y+++YT D I+ +N + RWE+
Sbjct: 231 GTAKGVKVYLNGERIKISKFKQYMEMYTKAIKTENIVNDGTAPEQVILTDNPHERWEIGF 290
Query: 329 APSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
A SD FQQVSFVNSIATT GG HV+ + D I ++ E+V KKNK
Sbjct: 291 AVSDGSFQQVSFVNSIATTSGGTHVNYIADQICDKLEEIVNKKNK--------------- 335
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
GG+ LK Q+KNHI++F+N LIVNP F SQTKE +T +
Sbjct: 336 --------------------GGVKLKKAQLKNHIFLFVNALIVNPAFTSQTKEQLTTKVS 375
Query: 449 SFGS--------------TCV-----------------------------PKLEDANDAG 465
+FGS T V KL DAN AG
Sbjct: 376 AFGSRPQVSEKFLKDIAKTEVVNNILHFAQQKADKVLAKSDGGRRQRMNHSKLTDANKAG 435
Query: 466 TKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEIN 525
TK+ CTL+LTEGDSA LA++G VV D +GVFPLRGK+LNVR+A+ QI +N EI
Sbjct: 436 TKDGHRCTLVLTEGDSAALLALAGRAVVNPDLFGVFPLRGKVLNVRDASVDQISKNQEIQ 495
Query: 526 NLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP 585
N+ K +GLQ+ K+YT D + LRYG +MIMTDQD DGSHIKGL+INF+ +P+LL++P
Sbjct: 496 NIKKFIGLQHKKEYT---DTRGLRYGHIMIMTDQDHDGSHIKGLLINFLQVQFPSLLKIP 552
Query: 586 -FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL EFITPI+K K + + F+++PE+E W+E+ + + KYYK
Sbjct: 553 GFLLEFITPIVKVWKGDPKHPKAKHDFFTMPEYEAWREQPGHSKGWDHKYYK 604
Score = 122 bits (306), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 81/116 (69%), Gaps = 4/116 (3%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDN-IKRMIRGE-DPL-PMKPWY 716
IEPE Y+PI+PMVL+NGAEGIGTGW T IP + P +++DN I+RM GE D + PM PWY
Sbjct: 815 IEPEQYVPILPMVLINGAEGIGTGWSTSIPQYKPDDVIDNLIRRMDVGEKDAMQPMTPWY 874
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
+ + G+ D D+RF G+I ++D+ + +TEL V WT +KD L+ ++ AEK
Sbjct: 875 RGWTGQTDQIDDTRFKFTGKIEVIDETTVRVTELPVHYWTQAFKDKLEDIIK-AEK 929
Score = 61.2 bits (147), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 36/52 (69%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALR 902
D+DYLLGM WSLT ER +L K+ DK E++IL K+P DLW +DL LR
Sbjct: 1098 DFDYLLGMPIWSLTEERVAKLNKQIGDKEVEIDILTAKSPQDLWKEDLTELR 1149
>gi|170591240|ref|XP_001900378.1| DNA gyrase/topoisomerase IV, A subunit family protein [Brugia
malayi]
gi|158591990|gb|EDP30592.1| DNA gyrase/topoisomerase IV, A subunit family protein [Brugia
malayi]
Length = 1178
Score = 538 bits (1386), Expect = e-149, Method: Compositional matrix adjust.
Identities = 288/649 (44%), Positives = 393/649 (60%), Gaps = 107/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITET-MWLMNRETNHMERREITYVPGLYKI 87
K++VEK YQ+ + L+HIL RPD+YIG E +++ + T + ++E VPGL KI
Sbjct: 59 KLAVEK-YQRLTPLKHILYRPDSYIGPTFLSDEQPIYVYDDITKQILKKEARIVPGLLKI 117
Query: 88 FDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGH 147
FDEILVNA DNK+RDP+M I I +++E NTIS+WNNG+GIPV H E ++VPTMIFG
Sbjct: 118 FDEILVNAADNKRRDPQMTTIAINIDKERNTISIWNNGRGIPVEIHPREGIYVPTMIFGT 177
Query: 148 LLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVV 207
L TSSNY +D E K+ GGRNG+GAKLCNIFS++F V
Sbjct: 178 LFTSSNY-------------------------DDSELKIVGGRNGFGAKLCNIFSTEFSV 212
Query: 208 ETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKD--DFTKITFTPDLTKFKMTSLDKDMVD 265
ET + F Q W++NM+ V P I S + D+T +TF PDL+KFK+++LD+D +
Sbjct: 213 ETCTKQSGLRFFQCWRNNMNDVDDPIISDASTNASDYTCVTFKPDLSKFKLSTLDEDTIQ 272
Query: 266 LITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKI-IYENVNPRW 324
++ RR D A + V VFLNG K+ V F+DYVKL++ E + + Y +VN RW
Sbjct: 273 VMIRRIVDIAGTLDGVNVFLNGTKIEVSGFKDYVKLFSTYTGESVENSTVPSYCSVNDRW 332
Query: 325 EVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFG 384
++A+A SD G+ +SFVN+I T KGGRHVD +V+ IV ++ + N+ GC
Sbjct: 333 QIAVARSDTGYNHISFVNNINTLKGGRHVDYIVNQIVSRLKHEI---NQRYGC------- 382
Query: 385 NKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT 444
+KF + Q+KN + IF+N LI NP F+SQ+KE +T
Sbjct: 383 DKF-------------------------ISAHQIKNRLHIFVNSLIENPAFESQSKEYLT 417
Query: 445 LQKGSFGSTCV------------------------------------------PKLEDAN 462
+FGSTC+ KLEDA
Sbjct: 418 TSVKNFGSTCIVPESFYENFIKDSDIIHHLLCDISQQHTTSLNRSMNRSLWDLSKLEDAA 477
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAGTKN +CTLI+TEGDSAK+LAV+GL V+GR +YGVFP+RGKL NVR K +ENA
Sbjct: 478 DAGTKNGCNCTLIITEGDSAKALAVAGLAVIGRKQYGVFPIRGKLTNVRGMDAKMAVENA 537
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EI+ LV+ILGL++ + Y++ E +K+LRYGRL+IMTDQD DGSHIKGLI+NF+H WP+LL
Sbjct: 538 EISALVRILGLKFGENYSSHEKLKSLRYGRLLIMTDQDPDGSHIKGLIVNFLHVYWPSLL 597
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+ ++ FITP++KA + + SFYS ++E+W+ E + Y IKYYK
Sbjct: 598 KANYVSYFITPLLKAKRGSDIKSFYSTADYEKWRAENPDSVKYSIKYYK 646
Score = 96.3 bits (238), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 69/112 (61%), Gaps = 4/112 (3%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY PIIPM+L+NGAEGIGTGW TKI PR+++ N +R+I G M P ++ F
Sbjct: 859 VEPEWYCPIIPMILINGAEGIGTGWATKILPRCPRQVISNAQRLIDGRPLQDMLPHFRKF 918
Query: 720 KGEIDYCGDSRFVVNGEIA---ILDDDKLEITELQVGKWTTDYKD-TLDTLL 767
+G I ++ ++G+++ + + ITEL G W YK+ LD+ +
Sbjct: 919 QGTIYETAPRQYSISGKVSYRRLKSGLRAIITELPTGIWNNKYKEKVLDSAI 970
>gi|302895481|ref|XP_003046621.1| hypothetical protein NECHADRAFT_33819 [Nectria haematococca mpVI
77-13-4]
gi|256727548|gb|EEU40908.1| hypothetical protein NECHADRAFT_33819 [Nectria haematococca mpVI
77-13-4]
Length = 1677
Score = 537 bits (1384), Expect = e-149, Method: Compositional matrix adjust.
Identities = 298/676 (44%), Positives = 390/676 (57%), Gaps = 131/676 (19%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
+P+K + + YQK +QL+HI+ RPDTYIGSVE +TMW+ N+ET+ ME R +T
Sbjct: 106 TPEKPKTTKPKTATETYQKLTQLQHIIKRPDTYIGSVEMTQQTMWVYNKETSLMEYRPVT 165
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
+VPGLYKIFDEILVNA DNKQRD M +KI +++ T ISV NNGKGIP+V H+ EK++
Sbjct: 166 FVPGLYKIFDEILVNAADNKQRDKSMTYMKINIDRATGVISVENNGKGIPIVIHEKEKIY 225
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCN 199
+P ++FGHLL SN ++D+E K GGRNGYGAKLCN
Sbjct: 226 IPELVFGHLLAGSN-------------------------FDDDEKKTVGGRNGYGAKLCN 260
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKM-TS 258
+FS++F +E +E+ K ++QVW DNM K+ +I S DF +ITF PD +F M
Sbjct: 261 VFSTEFQLECQDNEHGKRYRQVWTDNMQKMQKAKITSSKTADFVRITFKPDYKRFGMEDG 320
Query: 259 LDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDGD-- 311
+D D+ L+ RR YD A + + VKV LNGE L +K+F+ Y LY +R DE+G
Sbjct: 321 IDDDLERLLYRRVYDMAGTVRGVKVHLNGEVLKLKDFKGYCDLYAKSIAKERMDEEGGTP 380
Query: 312 --PVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVK 369
V++ + +PRWEV A SD FQQVSFVNSIATT GG HVD + + +
Sbjct: 381 TCSVEMDKDKGHPRWEVGFAVSDGTFQQVSFVNSIATTSGGSHVDYIANQVT-------- 432
Query: 370 KKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCL 429
A L + + G LK +KNHI+IF+NCL
Sbjct: 433 ----------------------------AYLLKALNKKKKGHTLKQSHLKNHIFIFVNCL 464
Query: 430 IVNPTFDSQTKENMTLQKGSFGSTCV---------------------------------- 455
I NP F+SQTKE+MT + FGS C
Sbjct: 465 IDNPAFNSQTKEHMTTKTSQFGSKCQLGEDFLKKVAKSEAIQNIMDFAERKADKMLAKSD 524
Query: 456 ---------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGK 506
KL +AN AGT+ +CTLILTEGDSAK LAVSG ++ D+ GVFPLRGK
Sbjct: 525 GNKRSRVSNAKLVEANLAGTRRGHECTLILTEGDSAKGLAVSGRAILDPDRIGVFPLRGK 584
Query: 507 LLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHI 566
LLNVR+A+ QI +N EI N+ + LGL++ + YT D K+LRYG LMIM DQD DGSHI
Sbjct: 585 LLNVRDASVDQITKNQEIQNIKQFLGLKHKQVYT---DTKSLRYGHLMIMADQDHDGSHI 641
Query: 567 KGLIINFIHHNWPTLLRLP-FLEEFITPIIKA------TKAREELSFYSLPEFEEWKEET 619
KGL+INF+ +P+LL++P F EFITPI+K K SF++ PE+EEWKE+
Sbjct: 642 KGLLINFLQVQFPSLLKVPDFFREFITPIVKVWQGPNPKKPLRLKSFFTQPEYEEWKEDH 701
Query: 620 TN----WHTYKIKYYK 631
+ WH+ KYYK
Sbjct: 702 KDDMGRWHS---KYYK 714
Score = 102 bits (253), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 79/122 (64%), Gaps = 12/122 (9%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMI-----RGEDPLP-- 711
+IEP Y PIIPMVLVNGA+GIGTGW T IPN++P +IV N+KR + + + LP
Sbjct: 923 KIEPVAYAPIIPMVLVNGADGIGTGWSTSIPNYHPEDIVRNLKRRMGRLDEKDGEELPFE 982
Query: 712 -MKPWYKNFKGEIDYCGDSRFVVNGEIAILDD---DKLEITELQVGKWTTDYKDTLDTLL 767
M PW++ +KG+ + G R+ NG IA ++ +++ I+EL + WT D+K L+ ++
Sbjct: 983 TMMPWFRGWKGQPEAAGPDRYKFNG-IAQQNERNPNEITISELPIRVWTDDFKARLEKII 1041
Query: 768 HG 769
G
Sbjct: 1042 SG 1043
Score = 45.8 bits (107), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 69/182 (37%), Gaps = 30/182 (16%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL-------- 901
+DYDYLL M WSLT ER +L + K E + L + DLW DLD
Sbjct: 1213 RDYDYLLSMPIWSLTAERLEKLKAAIEKKKAEHDDLLALSEKDLWCRDLDEFSAEWDNQL 1272
Query: 902 ---------------REKDKIHPCPGGNRTRGLALKRQTRYQPS--NRVLTSRDEPMVVS 944
R KI P G RG K Y P +R
Sbjct: 1273 ALDAELKTNIRRMGRRVSKKIGAGPAG---RGRKAKDDDDYDPGKKSRGRPKAAAAKAAP 1329
Query: 945 SGEDAPPPTKASPVKKKKPAAKRPAPKSDSSDLSDSDGDSDFASRKKKTAAAKKAKPAKK 1004
+ + + + KP K+ A +D ++ D+ D D+A+ + AA KA P+
Sbjct: 1330 VKVETKSAQRFAEMFSAKPKVKKEA-SADPMEVDDNFSDDDYAALSRSKPAA-KAGPSSP 1387
Query: 1005 ES 1006
E+
Sbjct: 1388 EA 1389
>gi|346970470|gb|EGY13922.1| DNA topoisomerase [Verticillium dahliae VdLs.17]
Length = 1743
Score = 537 bits (1384), Expect = e-149, Method: Compositional matrix adjust.
Identities = 310/738 (42%), Positives = 405/738 (54%), Gaps = 156/738 (21%)
Query: 21 PKKKTP---ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERRE 77
P + P K +VE+ YQK +QLEHI+ RPDTYIGSVE MW+ N+ET ME R+
Sbjct: 108 PSARAPVAKGTKKTVEETYQKLTQLEHIVKRPDTYIGSVERTEMPMWVYNKETQLMEFRK 167
Query: 78 ITYVPGLYKIFDEILVNACDNKQR-----DPKMNCIKITVNQETNTISVWNNGKGIPVVE 132
+T VPGLYKIFDEILVNA D K R + + IK+ +++E IS+ NNGKGIPV
Sbjct: 168 VTTVPGLYKIFDEILVNAADIKVRREESGEEPVTHIKVNIDREAGQISIENNGKGIPVEM 227
Query: 133 HKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNG 192
HK ++VP MIF GHLLT SNY+D+E K TGGRNG
Sbjct: 228 HKQHGIYVPEMIF-------------------------GHLLTGSNYDDDEKKTTGGRNG 262
Query: 193 YGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLT 252
YGAKLCN+FS++F VE S K +KQ W DNMSK+ +I S DF +ITF PD
Sbjct: 263 YGAKLCNVFSTEFTVECQDSANGKRYKQTWTDNMSKMGKAKITSSKSSDFVRITFKPDFK 322
Query: 253 KFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQD 307
+F M +D D+ L+ RR YD A + K +KV LNG + F+ Y ++Y +R
Sbjct: 323 RFSMEGIDDDLEALLYRRVYDMAGTIKGIKVHLNGTVVKPSAFKGYSEMYAKAIAKERAS 382
Query: 308 EDGDPVKIIYE---NVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQI 364
E+G K+ E N NPRW+V SD FQ +SFVN+IATT GG HV+ V D IV+ +
Sbjct: 383 EEGGEPKVTVEMDKNDNPRWDVGFTVSDGSFQHISFVNNIATTSGGTHVNYVADQIVQYL 442
Query: 365 IEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWI 424
+ + KK K G ALKP ++NHI++
Sbjct: 443 TKYLDKKKK------------------------------------GHALKPQHIRNHIFV 466
Query: 425 FINCLIVNPTFDSQTKENMTLQKGSFGSTCV----------------------------- 455
FINC I NP+F+SQTKE MT + SFGS CV
Sbjct: 467 FINCRIENPSFNSQTKEQMTTKVSSFGSKCVLSEAFLKKVAASDAIQNIMSFAEKKADKM 526
Query: 456 --------------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVF 501
KL DAN AGTK +CTLILTEGDSAKSLAV+G ++ D+ GVF
Sbjct: 527 MAKSDGNRRSRINNAKLVDANLAGTKRGHECTLILTEGDSAKSLAVAGRAILDPDRIGVF 586
Query: 502 PLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQ 561
PLRGK+LNVR+A+ +QI +N EI N+ + LGL++ + YT D K LRYG LMIM DQD
Sbjct: 587 PLRGKMLNVRDASIEQITKNQEIQNIKQFLGLKHKQNYT---DTKGLRYGHLMIMADQDH 643
Query: 562 DGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAR-----EEL-SFYSLPEFEE 614
DGSHIKGL+INF+ +P+LL++P F EFITPI+K + + ++L +F++ P++EE
Sbjct: 644 DGSHIKGLLINFLQVQYPSLLQIPDFFREFITPIVKVWQGKNPKNPQKLQAFFTQPQYEE 703
Query: 615 WKEETTN-WHTYKIKYYK----------VVYVTGV---------------LLFKMNLHKV 648
WKE N ++ KYYK VY T + LF + K
Sbjct: 704 WKEAHKNEISRWEYKYYKGLGTSSNEDAQVYFTNLDDHLKEFDTMQSSEAELFDLAFSKK 763
Query: 649 TSDSISMFIGRIEPEWYI 666
+D+ ++G P Y+
Sbjct: 764 KADARKEWLGNFVPGTYL 781
Score = 96.3 bits (238), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 71/122 (58%), Gaps = 11/122 (9%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMI-------RGEDPL-P 711
IEP+ Y PIIPMVL NGA+GIGTGW T IPN++P EIV IKR + E P
Sbjct: 931 IEPKVYAPIIPMVLCNGADGIGTGWSTSIPNYHPMEIVRAIKRRMGRLDSDDTEEKPFET 990
Query: 712 MKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEIT--ELQVGKWTTDYKDTLDTLLHG 769
M PW++ +KG + R+ NG I DD EI EL + WT D+K L+ ++ G
Sbjct: 991 MMPWFRGWKGTPEPAEKDRYKFNG-IYETDDKTGEIIIKELPIRMWTDDFKAKLEEVISG 1049
Query: 770 AE 771
A+
Sbjct: 1050 AK 1051
Score = 50.4 bits (119), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 806 EVFHDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTM 865
E F N+ K T E ++ A++ EDD G DYDYLL + WSLT+
Sbjct: 1187 EAFPKNDGKKQATT----EEEDMDASDNEDDSVGGAA--------DYDYLLSLPIWSLTL 1234
Query: 866 ERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
ER L K E + L ++ DLW DLD E+
Sbjct: 1235 ERLERLNSAIMKKKGEHDALLARSEKDLWCQDLDEFAEE 1273
>gi|84995060|ref|XP_952252.1| DNA topoisomerase II [Theileria annulata strain Ankara]
gi|65302413|emb|CAI74520.1| DNA topoisomerase II, putative [Theileria annulata]
Length = 1369
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 301/657 (45%), Positives = 392/657 (59%), Gaps = 124/657 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+VE+ YQKK+QLEHILLRPDTYIGS E + MWL + E N M I YVPGLYKIFDE
Sbjct: 6 TVEERYQKKTQLEHILLRPDTYIGSTELNNQQMWLYDEEKNRMVYETIDYVPGLYKIFDE 65
Query: 91 ILVNACDNKQR---DP---KMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMI 144
+LVNA D R DP KM CIK+T+++ T I V+N+G+ IP+ H + KM+VP +I
Sbjct: 66 LLVNAADVYARQLSDPTLEKMTCIKVTIDRGTGAIVVYNDGEPIPIQIHSEHKMYVPQLI 125
Query: 145 FGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSK 204
F G LLTS NY+D E++VTGGRNG+GAKL NIFS
Sbjct: 126 F-------------------------GELLTSDNYDDSEERVTGGRNGFGAKLANIFSKT 160
Query: 205 FVVETSCSEYKKSFKQVWKDNMSKVTSP-EIKSGSKDDFTKITFTPDLTKFKMTSLDKDM 263
F V + K FK W +NM+K SP I+S + DF KITF PD ++F + LD+
Sbjct: 161 FTVVVGNKKTHKKFKMTWCNNMTKTKSPAHIESYTGPDFVKITFIPDYSRFNLEELDEGT 220
Query: 264 VDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPR 323
++ +R YD A T VKV+LN E++ VK+F+DYV LY ED + IYE + R
Sbjct: 221 YRVLKKRVYDMAG-TLGVKVYLNNERIKVKDFKDYVNLYLP---EDATEIVKIYEKMY-R 275
Query: 324 WEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLF 383
WEV I+ S+ GF+QVSFVNSI T KGG HV VVD +V+ + + V KNK
Sbjct: 276 WEVVISSSEDGFRQVSFVNSINTLKGGTHVSHVVDPLVQSLTKKVNSKNK---------- 325
Query: 384 GNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENM 443
GG+ LKP Q++NHI++FINC IVNP+FDSQTKE +
Sbjct: 326 -------------------------GGIELKPNQIRNHIFVFINCQIVNPSFDSQTKETL 360
Query: 444 TLQKGSFGSTC----------------------------------------------VPK 457
T + FGS +PK
Sbjct: 361 TTKIVKFGSKYTMSDKTLNQVLKSKIFDNIISWLHEKTNIELKKKMKVAKGNDKLFGIPK 420
Query: 458 LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQ 517
LEDAN AGT+ + +CTLILTEGDSAK+ ++GL VVGRDKYGVFPL+GKLLNVREA++KQ
Sbjct: 421 LEDANKAGTRYATECTLILTEGDSAKTSCLAGLSVVGRDKYGVFPLKGKLLNVREASYKQ 480
Query: 518 ILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHN 577
+ +N E+ N++KI+GL + K +D LRYG +MIMTDQD DGSHIKGL+IN H+
Sbjct: 481 LTQNIEVQNILKIMGLDITNKLR--QDSSGLRYGSIMIMTDQDYDGSHIKGLLINMFHNF 538
Query: 578 WPTLLRL-PFLEEFITPIIKAT-KAREEL-SFYSLPEFEEWKEETTNWHTYKIKYYK 631
WP L++ F++EFITPIIK T K+ ++ SF+++ +F WK +T + Y++KYYK
Sbjct: 539 WPKLIQFNGFIKEFITPIIKVTNKSNNQVHSFFTIEDFNNWK-QTVDISNYRVKYYK 594
Score = 110 bits (276), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 78/116 (67%), Gaps = 1/116 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP +Y+PIIPMVLVNGAEGIGTG+ T IP++NP +I+DNI + +D M PWY+NF
Sbjct: 804 IEPYYYLPIIPMVLVNGAEGIGTGFSTFIPSYNPIDIIDNIVNFLDNKDMNDMIPWYRNF 863
Query: 720 KGEIDYCGDSRFVVNGEIAILDD-DKLEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
KG + + + G + ++L ITEL + +WT DY++ L++++ ++DE
Sbjct: 864 KGTVTRNSKLGYDIIGNYELNHSINQLVITELPINRWTNDYREYLNSIMATNKEDE 919
>gi|164663033|ref|XP_001732638.1| hypothetical protein MGL_0413 [Malassezia globosa CBS 7966]
gi|159106541|gb|EDP45424.1| hypothetical protein MGL_0413 [Malassezia globosa CBS 7966]
Length = 1376
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 310/691 (44%), Positives = 402/691 (58%), Gaps = 147/691 (21%)
Query: 19 PSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREI 78
P+P + PA K S YQK SQLEH+L RPDTYIGSVE TETMW+ + M R+
Sbjct: 12 PAPTSR-PAPK-SASDTYQKLSQLEHVLRRPDTYIGSVERRTETMWVYDVAKEQMAYRDT 69
Query: 79 TYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKM 138
+YVPG YKIFDEILVNA DNK RDP M+ +K+T++++ TISVWNNG+GIPV H+ E++
Sbjct: 70 SYVPGFYKIFDEILVNAADNKVRDPSMDTMKVTIDKDAGTISVWNNGQGIPVEIHEKEQV 129
Query: 139 FVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLC 198
++P +IF G+LLTSSNY+D+E KVTGGRNG+GAKL
Sbjct: 130 YIPELIF-------------------------GNLLTSSNYDDDEAKVTGGRNGFGAKLT 164
Query: 199 NIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMT 257
NI+S++F+VET+ + + +KQV+ ++M P+I K+ K+++T ITF PDL+ F M
Sbjct: 165 NIYSTEFIVETADKQRELKYKQVFSNHMHDKDKPKITKNTRKEEYTCITFKPDLSLFHMD 224
Query: 258 SLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPV---K 314
S+ D L+ +R +D A + +V + G+PV
Sbjct: 225 SIHPDTEALLMKRVFDMAGT----RVI---------------------RPHGGNPVPRPT 259
Query: 315 IIY---ENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK 371
I+Y E+ WEV A SD +QVSFVN+IAT KGG+HVD V IV++I+E +KK
Sbjct: 260 IVYDASEDHGRLWEVGFAVSDGTARQVSFVNNIATIKGGKHVDHVESQIVERIMEHLKKG 319
Query: 372 NKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIV 431
KD +K ++ +WIF+NC IV
Sbjct: 320 KKD------------------------------------APIKANHIRQQLWIFVNCQIV 343
Query: 432 NPTFDSQTKENMTLQKGSFGS--------------------------------------- 452
NPTFDSQTKE +TL+ +FGS
Sbjct: 344 NPTFDSQTKETLTLKPSAFGSKWVMPDDFAKKVLKSGVIDNVQSIVQYHQDRQLQATDGR 403
Query: 453 ----TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLL 508
V KLEDAN AGTK S +CTLILTEGDSAK LAVSGL VGRD YGVFPLRGKLL
Sbjct: 404 KRSRVSVTKLEDANWAGTKRSAECTLILTEGDSAKGLAVSGLSEVGRDAYGVFPLRGKLL 463
Query: 509 NVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKG 568
NVREAT+ QI +N EI N+ +ILGLQ+ K Y+TV+ LRYG LMIMTDQD DGSHIKG
Sbjct: 464 NVREATYDQIKKNTEIKNIKEILGLQHGKSYSTVDG---LRYGSLMIMTDQDFDGSHIKG 520
Query: 569 LIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKI 627
LIIN++ H +P+LL++P FL EFITPIIKATK +E SF+++PEFE+WK +
Sbjct: 521 LIINYLDHFYPSLLKIPNFLVEFITPIIKATKGQEVRSFFTIPEFEQWKATGDGGRGWTT 580
Query: 628 KYYKVV-----YVTGVLLFKMNLHKVTSDSI 653
KYYK + Y M+ H ++ D+I
Sbjct: 581 KYYKGLGTSKPYEMKEYFRDMDRHMLSFDTI 611
Score = 139 bits (349), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 80/113 (70%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY P++P VL+NGAEGIGTGW T +PN+NPRE+VDN++R + GE+ +PM PWY+ F
Sbjct: 794 IEPEWYAPVVPQVLLNGAEGIGTGWSTFVPNYNPREVVDNLRRRMAGEEYVPMNPWYRGF 853
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G I+ G RF V G LD+ EITEL V WT YK+ L+ + G++K
Sbjct: 854 VGGIEPAGPERFRVTGIARQLDERTWEITELPVRVWTMTYKEWLEERVVGSDK 906
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 7/87 (8%)
Query: 821 PQLERQERQAAEGEDDEAGSQTQEEEDP---DKDYDYLLGMTFWSLTMERKNELLKKRDD 877
P++E + + E EA +E ++P + DYDYLL M +SLT ER LLK+RD
Sbjct: 1043 PKVEAKAKSVTE----EAVEDQEEPDEPANSNTDYDYLLSMAIYSLTQERVERLLKERDH 1098
Query: 878 KMTELNILKKKAPTDLWSDDLDALREK 904
TEL IL ++P +LW +DL A E+
Sbjct: 1099 TETELKILLGRSPQNLWDEDLTAFLEE 1125
>gi|340960813|gb|EGS21994.1| topoisomerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1887
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 298/702 (42%), Positives = 395/702 (56%), Gaps = 133/702 (18%)
Query: 1 MSSDESDFDPDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPIT 60
+ +D D +G + T K + + YQK +QLEHI+ RPDTYIGSVE
Sbjct: 98 IENDSMQIDDAASGTADGDAAPAATTGKKKTATETYQKLTQLEHIIRRPDTYIGSVEKTD 157
Query: 61 ETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTIS 120
+ MW+ N+ ME R ITYVPGLYKIFDEILVNA DN QRD M IK+T+++E+ IS
Sbjct: 158 QKMWVFNKNEKMMENRTITYVPGLYKIFDEILVNAADNSQRDSSMTYIKVTIDRESGEIS 217
Query: 121 VWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYN 180
V NNGKGIPV H+ E++++P +IFGHLLT SN Y+
Sbjct: 218 VENNGKGIPVEIHEKEQVWIPELIFGHLLTGSN-------------------------YD 252
Query: 181 DEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKD 240
D E K GGRNGYGAKL NIFS +F +E S K +KQ W DNM + +I S
Sbjct: 253 DNEKKTVGGRNGYGAKLTNIFSKRFTIELQDSVNGKRYKQTWTDNMGNMEKAKITSNKSS 312
Query: 241 DFTKITFTPDLTKFKM-TSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYV 299
DF K++F PD +F M +D D+ L+ RR YD A + VKV+LNGE+L + NF+ Y
Sbjct: 313 DFVKVSFLPDYKRFGMENGIDDDLEALLYRRVYDMAGTVNGVKVYLNGEQLKI-NFKSYC 371
Query: 300 KLYT-----DRQDE--DGD---PVKIIYENVNPR---WEVAIAPSDRGFQQVSFVNSIAT 346
+LY +R DE DGD K+ ++ V + W++ SD FQQVSFVN+IAT
Sbjct: 372 ELYARAIARERGDEATDGDKPPAAKVEFDQVRDKGRLWQIGFTVSDGTFQQVSFVNNIAT 431
Query: 347 TKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGV 406
T GG HV+ + D I +++ + K+ K
Sbjct: 432 TSGGTHVNYIADQICDALVKELNKRKK--------------------------------- 458
Query: 407 RLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTCV----------- 455
G +LKP +NHI+IFINCLI NP F SQTKE +T + +FGS C
Sbjct: 459 ---GHSLKPSHFRNHIFIFINCLIDNPAFTSQTKEQLTTKVSAFGSKCQLSEPFLKKIRQ 515
Query: 456 --------------------------------PKLEDANDAGTKNSIDCTLILTEGDSAK 483
KL DAN AGTK +CTLILTEGDSA+
Sbjct: 516 SEAIANIMAFADKKADKMLAKSDGNKRSRISNEKLVDANLAGTKRGHECTLILTEGDSAR 575
Query: 484 SLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVE 543
LAV+G V+ D+ GVFPLRGK+LNVR+A+ QI++N EI N+ K LGL++ ++YT
Sbjct: 576 GLAVAGRAVLDPDRIGVFPLRGKMLNVRDASIDQIMKNKEIENIKKFLGLKHKQEYT--- 632
Query: 544 DMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKA----- 597
D K+LRYG LMIM DQD DGSHIKGL+INF+ +P+LLR+P F +EFITP++K
Sbjct: 633 DTKSLRYGHLMIMADQDLDGSHIKGLLINFLEVQFPSLLRIPGFFQEFITPVVKVWQGNN 692
Query: 598 -TKAREELSFYSLPEFEEWKEETTNWHTYKIKYYKVVYVTGV 638
K + F++LPE+E+WKEE H ++++ +K Y+ G+
Sbjct: 693 PKKPQNLKMFFNLPEYEQWKEE----HKHELRKWKYKYLKGL 730
Score = 111 bits (277), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 83/123 (67%), Gaps = 11/123 (8%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIK-RMIRGEDP-------LP 711
IEP+ Y+PIIPMVLVNGA+GIGTGW T IPN+NP++IV+N+K RM R E LP
Sbjct: 938 IEPKVYVPIIPMVLVNGADGIGTGWSTGIPNYNPKDIVENLKRRMGRDESGDGVEKPFLP 997
Query: 712 MKPWYKNFKGEIDYCGDSRFVVNGEIAI--LDDDKLEITELQVGKWTTDYKDTLDTLLHG 769
M PW++ +KG++ G +R+ NG I + +++ +TEL + WT D+K L+ +L
Sbjct: 998 MTPWWRGWKGQVLPDGPNRWKFNGIIKQDETNPNEVHVTELPIRMWTDDFKARLEEILR- 1056
Query: 770 AEK 772
AEK
Sbjct: 1057 AEK 1059
Score = 55.5 bits (132), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 806 EVFHDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTM 865
E F N K + T +L R E A +D++AG +DYDYLL M WS T
Sbjct: 1193 EPFPPNAEKKVKNTDEELNRDE---ASSDDEDAGGGVTA-----RDYDYLLSMPVWSFTA 1244
Query: 866 ERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
ER +L K E N L K+ DLW +DLDA E
Sbjct: 1245 ERLEKLKGMIAAKKAEWNELNAKSEKDLWVEDLDAFME 1282
>gi|403222061|dbj|BAM40193.1| DNA topoisomerase 2 [Theileria orientalis strain Shintoku]
Length = 2103
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 300/657 (45%), Positives = 391/657 (59%), Gaps = 124/657 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+VE+ YQKKSQLEHILLRPDTYIGS E T+ MW+ + + M I YVPGLYKIFDE
Sbjct: 6 TVEERYQKKSQLEHILLRPDTYIGSTEMNTQQMWVFDEKKKRMVYENIDYVPGLYKIFDE 65
Query: 91 ILVNACDNKQR---DP---KMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMI 144
+LVNA D R DP KM CIK+T++ ET I V+N+G+ IP+ H + M+VP +I
Sbjct: 66 LLVNAADVYARQLSDPSLEKMTCIKVTIDTETGAIVVFNDGEPIPIQIHSEHNMYVPQLI 125
Query: 145 FGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSK 204
F G LLTS NY+D E++VTGGRNG+GAKL NIFS
Sbjct: 126 F-------------------------GELLTSDNYDDSEERVTGGRNGFGAKLANIFSKT 160
Query: 205 FVVETSCSEYKKSFKQVWKDNMSKVTSP-EIKSGSKDDFTKITFTPDLTKFKMTSLDKDM 263
F V + + KK FK W +NM K P +++ DF KITF PD KF + +D
Sbjct: 161 FTVVVANKKMKKKFKMTWCENMRKTKGPAKVEPYQGQDFVKITFLPDYEKFNLKQIDPGT 220
Query: 264 VDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPR 323
+ ++ +R YD A +T VKV+LN E++ +K+F++YV LY ED +++ + R
Sbjct: 221 LKVLKKRVYDVAGTT-GVKVYLNNERIKIKDFKEYVNLYLP---EDASETVKVHDKM-YR 275
Query: 324 WEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLF 383
WEV ++ S+ GF+QVSFVNSI T KGG HV VVD +V+ + + V KNK
Sbjct: 276 WEVVVSGSEEGFRQVSFVNSINTIKGGTHVSHVVDPLVQSLSKKVNSKNK---------- 325
Query: 384 GNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENM 443
GG+ LKP Q+KNHI+IFINC IVNP+FDSQTKE +
Sbjct: 326 -------------------------GGIELKPNQIKNHIFIFINCQIVNPSFDSQTKETL 360
Query: 444 TLQKGSFGSTC-----------------------------------------------VP 456
T + FGS +P
Sbjct: 361 TTKIIKFGSKYTMSEKALGQVLRSKIVDNILNWLHEKTNIELKKKMKVSSKGSDKLFGIP 420
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KLEDAN AGT+ S++CTLILTEGDSAK+ ++GL VVGRDKYGVFPL+GKLLNVREA++K
Sbjct: 421 KLEDANKAGTRFSMECTLILTEGDSAKTSCLAGLSVVGRDKYGVFPLKGKLLNVREASYK 480
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
Q+ +N E+ N++KI+GL S K + ED LRYG +MIMTDQD DGSHIKGL+IN H+
Sbjct: 481 QLTQNVEVQNILKIMGLDISNK--SREDSSGLRYGSVMIMTDQDYDGSHIKGLLINLFHN 538
Query: 577 NWPTLLRL-PFLEEFITPIIKAT-KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
WP L++ F+ EF+TP+IK T KA + LSF+++ +F WK ET + +YKIKYYK
Sbjct: 539 FWPKLIQFNGFIREFVTPLIKVTSKAGQVLSFFTMEDFNRWK-ETVDITSYKIKYYK 594
Score = 116 bits (291), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP +Y+PIIPMVLVNG+EGIGTG+ T +P +NP ++++NIK +R E+ M PWYK F
Sbjct: 804 VEPFYYLPIIPMVLVNGSEGIGTGFSTNVPCYNPIDVIENIKNYLRNEEMFEMVPWYKGF 863
Query: 720 KGEIDYCGDSRFVVNGEIAILDD-DKLEITELQVGKWTTDYKDTLDTLL 767
KG I+ F V G+ + +D KL ITEL + +W DY++ L++L+
Sbjct: 864 KGTIERNSKLGFDVVGKYKLSEDMRKLTITELPINRWINDYREFLNSLV 912
>gi|444714020|gb|ELW54908.1| DNA topoisomerase 2-alpha [Tupaia chinensis]
Length = 1392
Score = 535 bits (1379), Expect = e-148, Method: Compositional matrix adjust.
Identities = 265/456 (58%), Positives = 319/456 (69%), Gaps = 81/456 (17%)
Query: 222 WKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDV 281
W DNM + E+K + +D+T ITF PDL+KFKM SLDKD+V L+ RRAYD A STKDV
Sbjct: 87 WMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDV 146
Query: 282 KVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSF 340
KVFLNG KLPVK F+ YV +Y D+ DE G+P+K+I+E VN RWEV + S++GFQQ+SF
Sbjct: 147 KVFLNGNKLPVKGFRSYVDMYLKDKLDETGNPLKVIHEQVNHRWEVCLTMSEKGFQQISF 206
Query: 341 VNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKT 400
VNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 207 VNSIATSKGGRHVDYVADQIVTKLVDVVKKKNK--------------------------- 239
Query: 401 LIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC------ 454
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ SFGSTC
Sbjct: 240 --------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQAKSFGSTCQLSEKF 291
Query: 455 ---------------------------------------VPKLEDANDAGTKNSIDCTLI 475
+PKL+DANDAG ++S +CTLI
Sbjct: 292 IKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDANDAGGRSSAECTLI 351
Query: 476 LTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQY 535
LTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENAEINN++KI+GLQY
Sbjct: 352 LTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQY 411
Query: 536 SKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPII 595
K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LLR FLEEFITPI+
Sbjct: 412 KKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIV 471
Query: 596 KATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
K +K ++E++FYSLPEFEEWK T N +K+KYYK
Sbjct: 472 KVSKNKQEIAFYSLPEFEEWKSSTPNHKKWKVKYYK 507
Score = 149 bits (376), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVLVNGAEGIGTGW KIPN + RE+V+NI+R++ GE+ LPM P YKN
Sbjct: 728 RVEPEWYIPIIPMVLVNGAEGIGTGWSCKIPNFDVREVVNNIRRLMDGEELLPMLPSYKN 787
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V++GE+AIL+ +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 788 FKGTIEELAPNQYVISGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 842
Score = 63.9 bits (154), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 60/114 (52%), Gaps = 22/114 (19%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERRE--------ITY 80
++S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ M M R ME + IT+
Sbjct: 54 RLSIERIYQKKTQLEHILLRPDTYIGSVELVTQWMDNMGR-AGEMELKPFNGEDYTCITF 112
Query: 81 VPGLYKI----FDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPV 130
P L K D+ +V + D + T + V+ NG +PV
Sbjct: 113 QPDLSKFKMQSLDKDIVALMVRRAYD---------IAGSTKDVKVFLNGNKLPV 157
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 38/52 (73%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL K R++K EL+ LK+K+P+DLW +DL A E
Sbjct: 1018 FNYLLDMPLWYLTKEKKDELCKLRNEKEQELDTLKRKSPSDLWKEDLAAFIE 1069
>gi|71030782|ref|XP_765033.1| DNA topoisomerase II [Theileria parva strain Muguga]
gi|68351989|gb|EAN32750.1| DNA topoisomerase II, putative [Theileria parva]
Length = 1378
Score = 535 bits (1377), Expect = e-148, Method: Compositional matrix adjust.
Identities = 306/657 (46%), Positives = 394/657 (59%), Gaps = 124/657 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+VE+ YQKK+QLEHILLRPDTYIGS E + MW+ + E N M I YVPGLYKIFDE
Sbjct: 6 TVEERYQKKTQLEHILLRPDTYIGSTELNNQQMWVFDEEKNRMVYETIDYVPGLYKIFDE 65
Query: 91 ILVNACDNKQR---DP---KMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMI 144
+LVNA D R DP KM CIK+T+++ T I V+N+G+ IP+ H + KM+VP +I
Sbjct: 66 LLVNAADVYARQLSDPTLEKMTCIKVTIDRGTGAIVVYNDGEPIPIQIHNEHKMYVPQLI 125
Query: 145 FGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSK 204
F G LLTS NY+D E++VTGGRNG+GAKL NIFS
Sbjct: 126 F-------------------------GELLTSDNYDDSEERVTGGRNGFGAKLANIFSKT 160
Query: 205 FVVETSCSEYKKSFKQVWKDNMSKVTSP-EIKSGSKDDFTKITFTPDLTKFKMTSLDKDM 263
F V + KK FK W DNM+K SP +I+S DF KITF PD ++F +T LD+
Sbjct: 161 FTVVVGNKKTKKKFKMTWCDNMTKTKSPAQIESYMGPDFVKITFIPDYSRFNLTELDEGT 220
Query: 264 VDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPR 323
++ +R YD A T VKVFLN E++ VK+F+DYV LY ED + IYE + R
Sbjct: 221 YKVLKKRVYDMAG-TLGVKVFLNNERIKVKDFKDYVNLYLP---EDATEIVKIYEKMY-R 275
Query: 324 WEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLF 383
WEV I+ S+ GF+QVSFVNSI T KGG HV VVD +V+ + + V KNK
Sbjct: 276 WEVVISTSEDGFRQVSFVNSINTIKGGTHVSHVVDPLVQSLTKKVNSKNK---------- 325
Query: 384 GNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENM 443
GG+ LKP Q+KNHI++FINC IVNP+FDSQTKE +
Sbjct: 326 -------------------------GGIELKPNQIKNHIFVFINCQIVNPSFDSQTKETL 360
Query: 444 TLQKGSFGSTC----------------------------------------------VPK 457
T + FGS +PK
Sbjct: 361 TTKIVKFGSKYTMSDKTLNQVLKSKIFDNILSWLHEKTNIELKKKMKVAKGNDKLFGIPK 420
Query: 458 LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQ 517
LEDAN AGT+ + +CTLILTEGDSAK+ ++GL VVGRDKYGVFPL+GKLLNVREA++KQ
Sbjct: 421 LEDANKAGTRYATECTLILTEGDSAKTSCLAGLSVVGRDKYGVFPLKGKLLNVREASYKQ 480
Query: 518 ILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHN 577
+ +N E+ N++KI+GL + K +D LRYG +MIMTDQD DGSHIKGL+IN H+
Sbjct: 481 LTQNIEVQNILKIMGLDITNKLR--QDSSGLRYGSIMIMTDQDYDGSHIKGLLINMFHNF 538
Query: 578 WPTLLRL-PFLEEFITPIIKAT-KAREEL-SFYSLPEFEEWKEETTNWHTYKIKYYK 631
WP L++ F++EFITPIIK T K+ ++ SF+++ +F WK +T + Y+IKYYK
Sbjct: 539 WPKLIQFNGFIKEFITPIIKVTNKSNNQVHSFFTIEDFNNWK-QTVDISNYRIKYYK 594
Score = 108 bits (271), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 78/116 (67%), Gaps = 1/116 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP +Y+PIIPMVLVNGAEGIGTG+ T IP++NP +++DNI + +D M PWY+NF
Sbjct: 804 IEPYYYLPIIPMVLVNGAEGIGTGFSTYIPSYNPIDVIDNIVNFLDNKDMNDMIPWYRNF 863
Query: 720 KGEIDYCGDSRFVVNGEIAILDD-DKLEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
KG + + + G+ + ++L ITEL V +W DY++ L++++ ++DE
Sbjct: 864 KGTVTRNTKLGYDITGKYELNHSLNQLVITELPVNRWINDYREFLNSIMVTNKEDE 919
>gi|342186237|emb|CCC95723.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 1612
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 289/656 (44%), Positives = 383/656 (58%), Gaps = 123/656 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+VE++YQKK+Q EHIL RPD YIG++EP+TE MW+ + M+ + T+ PGLYKIFDE
Sbjct: 5 TVEEVYQKKTQHEHILARPDMYIGTIEPVTEDMWVYDEADCVMKLQRCTWTPGLYKIFDE 64
Query: 91 ILVNACDNKQRDPK-MNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
ILVNA DNK RDP IK+ ++ E I V+NNG+GIPV H++ ++VP MIF
Sbjct: 65 ILVNAADNKVRDPHGQTAIKVWIDTERGVIRVYNNGEGIPVQRHREHDLWVPEMIF---- 120
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
GHLLTSSNY+D E KVTGGRNG+GAKL N+FS+ F +ET
Sbjct: 121 ---------------------GHLLTSSNYDDTEAKVTGGRNGFGAKLTNVFSTCFELET 159
Query: 210 SCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
S +K F W++NM + P I S D+T +TF PD KFK+ L +DM ++ R
Sbjct: 160 VHSRSRKKFFMRWRNNMLESEEPVITSCDGPDYTMVTFYPDFAKFKLQGLSEDMALIMKR 219
Query: 270 RAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAI 328
R YD A T K + +LNG K+P ++F +YV LY E+ P Y VN RWEV +
Sbjct: 220 RVYDIAGCTEKSLSCYLNGGKIPCRSFAEYVDLYPT-MGEERRPGS--YSRVNDRWEVCV 276
Query: 329 APSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
S+ GFQQVSFVNSIATT+GG HV VV+ I+ ++ E +K+K
Sbjct: 277 RVSNIGFQQVSFVNSIATTRGGTHVKYVVEQIIAKVTEQAMRKSK--------------- 321
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
+KP ++ H+++F+NCLI NP+FDSQTKE + K
Sbjct: 322 ----------------------TEVKPHMIRPHMFVFVNCLIENPSFDSQTKETLNTPKT 359
Query: 449 SFGSTC---------------------------------------------VPKLEDAND 463
FGS C +PKL+DAN+
Sbjct: 360 RFGSVCDLPASLIDCVLKSSIVERAVEMANSKLSQEMAMKLRNSNRKQVLGIPKLDDANE 419
Query: 464 AGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAE 523
AG +NS CTLILTEGDSAK+L +GL + RD +GVFPLRGK LNVR+A+ K+++ AE
Sbjct: 420 AGGENSHRCTLILTEGDSAKALCTAGLSLKDRDYFGVFPLRGKPLNVRDASIKKVMSCAE 479
Query: 524 INNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR 583
+ KI+GL ++KYT+VE LRYG LMIM+DQD DGSHIKGLIIN IH+ WP LL+
Sbjct: 480 FQAICKIMGLDVTQKYTSVEG---LRYGHLMIMSDQDHDGSHIKGLIINMIHNYWPDLLK 536
Query: 584 LP-FLEEFITPIIKATKARE------ELSFYSLPEFEEWKEETT-NWHTYKIKYYK 631
+P FL++FITPI+KA K +SF+S+P++ EWK N Y+++YYK
Sbjct: 537 VPGFLQQFITPIMKARKKSRGNGDEGAISFFSMPDYFEWKNAVGDNIKNYELRYYK 592
Score = 120 bits (302), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 74/107 (69%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP +Y+P+IPMVLVNG GIGTG+ T IPN++P +++DN++R++ G+D PMKPWY F
Sbjct: 806 VEPFYYVPVIPMVLVNGTAGIGTGFATNIPNYSPLDVIDNLRRLLSGDDLRPMKPWYFGF 865
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
G I+ +FV +G + D + ITEL +G WT+ YK L+ L
Sbjct: 866 TGTIEEREKGKFVSSGRYTVRPDGVVCITELPIGTWTSQYKKFLEDL 912
Score = 53.9 bits (128), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALR 902
+DYDYLLG+ W+LT E LL + + + + K +P+DLW +DLD L+
Sbjct: 1111 RDYDYLLGLRLWNLTAEMSARLLAQLEAARAKCETIAKCSPSDLWREDLDLLQ 1163
>gi|393909866|gb|EJD75625.1| DNA topoisomerase 2 [Loa loa]
Length = 1185
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 284/666 (42%), Positives = 396/666 (59%), Gaps = 107/666 (16%)
Query: 12 VQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIG-SVEPITETMWLMNRET 70
V N P+++T KM+V K YQ+ + L+HIL RPD+YIG + +++++ +
Sbjct: 45 VNSNSVPHEPEEQTTIAKMAV-KTYQRLTPLKHILYRPDSYIGPAFLSDEQSIYVYDAMM 103
Query: 71 NHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPV 130
+ R+E VPGL KIFDEILVNA DNK+RDP+M I +++++E NTIS+WNNG+GIPV
Sbjct: 104 KRILRKEARIVPGLLKIFDEILVNAADNKRRDPQMTIIAVSIDREKNTISIWNNGRGIPV 163
Query: 131 VEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGR 190
H E ++VPTMIFG L TSSNY +D E K+ GGR
Sbjct: 164 EIHPTEGVYVPTMIFGTLFTSSNY-------------------------DDSELKIVGGR 198
Query: 191 NGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKS--GSKDDFTKITFT 248
NG+GAKLCNIFS++F VET + F Q W+ NM+ V P I + + D+T +TF
Sbjct: 199 NGFGAKLCNIFSTEFCVETCTKQSGLRFFQCWRKNMNDVDDPIISNVDTNASDYTCVTFK 258
Query: 249 PDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDE 308
PDL+KFK+++LD+D ++++ RR D A + V VFLNG K+ V F+DYVKL++ E
Sbjct: 259 PDLSKFKLSTLDEDTIEVMIRRTVDIAGTLDGVHVFLNGTKIEVSGFEDYVKLFSTNTSE 318
Query: 309 DGDPVKI-IYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEV 367
+ + + Y NVN RW++A+A S+ G+ SFVN+I T KGGRHVD +++ +V ++ +
Sbjct: 319 NFENFTVPSYCNVNNRWQIAVARSNDGYNHTSFVNNINTLKGGRHVDYIMNQLVSRLKQE 378
Query: 368 VKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFIN 427
++++ C L + QVKN + IF+N
Sbjct: 379 IRQR-----CDCEKL------------------------------ISTHQVKNRLHIFVN 403
Query: 428 CLIVNPTFDSQTKENMTLQKGSFGSTCV-------------------------------- 455
LI NP F+SQ+KE +T FGSTC+
Sbjct: 404 SLIENPAFESQSKEYLTTSVKDFGSTCIIPESFYENFFKDSDIIHYLLCDISEQHTASLN 463
Query: 456 ----------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRG 505
KLEDA DAGTKN +CTLI+TEGDSAK+LAV+GL V+GR +YGVFP+RG
Sbjct: 464 RSIKRPLWDLSKLEDAVDAGTKNGYNCTLIVTEGDSAKALAVAGLAVIGRKQYGVFPVRG 523
Query: 506 KLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSH 565
KL NVR K ++N+EI+ L++ILGL++ + Y ED+K+LRYGRL+IMTDQD DGSH
Sbjct: 524 KLTNVRGMDAKMAVKNSEISALIRILGLKFGENYGNAEDLKSLRYGRLLIMTDQDPDGSH 583
Query: 566 IKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTY 625
IKGLIIN +H WP+LL+ ++ FITP++KA + E SFYS ++E W+ E + Y
Sbjct: 584 IKGLIINLLHMYWPSLLKANYINYFITPLLKAKRGSEVKSFYSTADYERWQAENPDSAKY 643
Query: 626 KIKYYK 631
IKYYK
Sbjct: 644 SIKYYK 649
Score = 100 bits (249), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 4/112 (3%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY PIIPM+L+NGAEGIGTGW TKI PR+I+ N +R+I G M P ++ F
Sbjct: 859 IEPEWYCPIIPMILINGAEGIGTGWATKILPRCPRQIISNAQRLIDGRPLQDMLPHFRKF 918
Query: 720 KGEIDYCGDSRFVVNGEIA---ILDDDKLEITELQVGKWTTDYKD-TLDTLL 767
+G I+ ++ ++G+I+ + + ITEL G W YK+ LD+++
Sbjct: 919 QGTINEITPRQYSISGKISYHRLRSGLRAIITELPTGIWNNKYKEKVLDSIM 970
>gi|358384566|gb|EHK22163.1| hypothetical protein TRIVIDRAFT_28551 [Trichoderma virens Gv29-8]
Length = 1646
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 290/657 (44%), Positives = 375/657 (57%), Gaps = 128/657 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHI+ RPDTYIGSVE + +W+ N+E+ ME R ITYVPG YKIFDEILVNA
Sbjct: 122 YQKLTQLEHIIKRPDTYIGSVEKTDQQIWVYNKESKQMEYRNITYVPGFYKIFDEILVNA 181
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQRD MN +K+ +++ T ISV NNGKGIP+V H+ EK+++P +IFGHLL SN
Sbjct: 182 ADNKQRDSSMNMMKVNIDRATGEISVENNGKGIPIVMHEKEKVYIPELIFGHLLAGSN-- 239
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
++D E K GGRNGYGAKLCN+FS++F +E SE
Sbjct: 240 -----------------------FDDNEKKTVGGRNGYGAKLCNVFSTEFTLECQDSENG 276
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKM-TSLDKDMVDLITRRAYDA 274
K +KQ+W +NM + +I S DF ++TF PD +F M + D+ L+ RR YD
Sbjct: 277 KRYKQLWTNNMQTMHKAKITSSKSSDFVRVTFKPDYARFGMEEGITDDLEALLYRRVYDM 336
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTD------RQDEDGDP---VKIIYENVNPRWE 325
A + + VKV LNGE + +K+F+ Y LY +E G+P V+I + +PRWE
Sbjct: 337 AGTMRGVKVQLNGELIKIKDFKAYCDLYAKSIAGERSMEEGGNPTCTVEIDKDKGHPRWE 396
Query: 326 VAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
V SD FQQVSFVNSIATT GG HV+ V D I +++ V K K
Sbjct: 397 VGFTVSDGTFQQVSFVNSIATTSGGTHVNYVADQITAYLLKAVTKLRK------------ 444
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTL 445
G LK ++NHI+IF+NCL+ NP F SQTKE MT
Sbjct: 445 ------------------------GHGLKQAHLRNHIFIFVNCLVDNPAFTSQTKEQMTT 480
Query: 446 QKGSFGSTCV-------------------------------------------PKLEDAN 462
+ FGS CV KL +AN
Sbjct: 481 KASQFGSKCVLGEDFLKKVAKSDAIKNIMDFAERKADKMMAKSDGNKRSRVSNAKLVEAN 540
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
AGT+ +CTLILTEGDSAK LAVSG ++ D+ GVFPLRGKLLNVR+A+ QI +N
Sbjct: 541 LAGTRRGHECTLILTEGDSAKGLAVSGRAILDPDRIGVFPLRGKLLNVRDASIDQITKNQ 600
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EI N+ + LGL++ + YT D K+LRYG LMIM DQD DGSHIKGL+INF+ +P+LL
Sbjct: 601 EIQNIKQFLGLKHKQVYT---DTKSLRYGHLMIMADQDHDGSHIKGLLINFLQVQFPSLL 657
Query: 583 RLP-FLEEFITPIIKA------TKAREELSFYSLPEFEEWKE----ETTNWHTYKIK 628
++P F EFITPI+K K + SF++ P++EEWKE E + WH +K
Sbjct: 658 QIPDFFREFITPIVKVWQGPNPKKPQRLKSFFTQPQYEEWKEERGSEISRWHYKYLK 714
Score = 104 bits (260), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 80/124 (64%), Gaps = 12/124 (9%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMI----RGED---PL- 710
+IEPE Y PI+PMVL+NGA+GIGTGW T IPN++P E+V N+KR + G+D P
Sbjct: 923 QIEPEIYAPILPMVLINGADGIGTGWSTSIPNYHPLEVVKNLKRRMGRLEEGDDEEKPFE 982
Query: 711 PMKPWYKNFKGEIDYCGDSRFVVNGEIAILDD---DKLEITELQVGKWTTDYKDTLDTLL 767
M PW++ +KG + G R+ NG IA ++ +++ ITEL + WT D+K L+ ++
Sbjct: 983 TMTPWFRGWKGTPEAAGPDRYKFNG-IAYQNEQNANEVVITELPIRVWTDDFKARLEKII 1041
Query: 768 HGAE 771
G +
Sbjct: 1042 SGVD 1045
Score = 47.8 bits (112), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 86/185 (46%), Gaps = 32/185 (17%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHP 909
+D+DYLL M WSLT ER +L K E + L+ K+ DLW +DL A + + H
Sbjct: 1210 RDFDYLLSMPIWSLTAERLEKLKDAIRRKKAEYDELEAKSDKDLWCEDLTAFEAEWEKHL 1269
Query: 910 CPGGNRTRGLALKRQTRYQPSNRVLT----SRDEPMVVSSGEDAPPP-----TKASP-VK 959
L+ + QT + R ++ + + +D P KA+P VK
Sbjct: 1270 A--------LSAEIQTNIRRMGRRVSKKIGAGGGRGKKAKDDDEYEPEKKGRKKAAPAVK 1321
Query: 960 KKKPAAKR--------PAPKSDSS----DLSDSDGDSDFAS-RKKKTAAAKKAKPAK-KE 1005
+ +A+R P K +S +LSD+ D DFA+ + K A AKKA ++ K
Sbjct: 1322 TETKSAQRFADMFSAKPKVKKESEPEVVELSDNFSDDDFAALSRSKPAPAKKASESRPKA 1381
Query: 1006 SEYSS 1010
SE +S
Sbjct: 1382 SESTS 1386
>gi|32478664|gb|AAP83584.1| DNA-topoisomerase II [Physarum polycephalum]
Length = 1498
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 299/689 (43%), Positives = 395/689 (57%), Gaps = 149/689 (21%)
Query: 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFD 89
+SVE++YQKK+ +EHILLRPD+YIGS++ + W++N ME RE YVPGLYKIFD
Sbjct: 317 VSVEEMYQKKTPVEHILLRPDSYIGSIQHTHQEQWVINESDGRMEYRECKYVPGLYKIFD 376
Query: 90 EILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
EILVNA DNKQRD KMN +++T++ N IS+ NNGKGIPV H+ EK++VP ++ G LL
Sbjct: 377 EILVNAADNKQRDHKMNVLQVTIDPANNIISILNNGKGIPVQLHEKEKVYVPELVLGTLL 436
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
T SN++ DK+ KVTGGRNG+GAKL NIFS+ F VET
Sbjct: 437 TGSNFD---DKIA----------------------KVTGGRNGFGAKLTNIFSTSFEVET 471
Query: 210 SCSEYKKSFKQVWKDNMSKVTSPEIK--SGSK-DDFTKITFTPDLTKFKMTSLDK-DMVD 265
+ + K ++Q W +NMS+ T P I+ SG K D+T+ITF+PDL KF M SL+ D++
Sbjct: 472 ADAARHKLYRQSWSENMSQRTEPSIEHYSGPKGSDYTRITFSPDLAKFNMQSLENGDILR 531
Query: 266 LITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR------QDEDG--------- 310
L+ RR YD AA V+V LNG +P F YV +Y + EDG
Sbjct: 532 LMKRRIYDMAACLPSVQVSLNGIPIP-SGFDAYVSMYQPKDAQPLSNAEDGAQNEQEEHG 590
Query: 311 -------------DPVK--IIYENVNPRWEVAIAPS--DRGFQQVSFVNSIATTKGGRHV 353
P K +Y +N RW+VA+ + + F QVSFVNSIAT+KGG HV
Sbjct: 591 EGAEGTEGEQPGKQPTKHPFVYAKINDRWQVAVGLTMLEGQFSQVSFVNSIATSKGGTHV 650
Query: 354 DAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMAL 413
+ V + +VK I E + KK DL
Sbjct: 651 NHVAEQVVKAIHERITKKYPDLDT------------------------------------ 674
Query: 414 KPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC------------------- 454
+P ++N++++F+NCLI NP FDSQTK+ +T + FGS C
Sbjct: 675 RPAHIRNNLFVFVNCLIENPAFDSQTKDTLTTRPAHFGSACDLPDSFLKRIVAQVPIIDK 734
Query: 455 -----------------------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSL 485
+PKL+DAN AG S +CTLI+TEGDSAKSL
Sbjct: 735 VVGWAKLKQMAEFEKSSTRKPKDKAGIKAIPKLDDANFAGGPRSSECTLIITEGDSAKSL 794
Query: 486 AVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDM 545
AVSGL +VGRDKYGVFPLRGKLLNVR+ + K+++EN E+ +L ILGL K+Y T ED
Sbjct: 795 AVSGLSIVGRDKYGVFPLRGKLLNVRDQSPKRVMENEELKHLRMILGLTPGKEYRTAEDR 854
Query: 546 KTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREEL 604
LRYG++M+MTDQD DGSHIKGL +NF+ WP+LL FLE+FITPI+KA E
Sbjct: 855 AELRYGKVMLMTDQDHDGSHIKGLFVNFMIQFWPSLLEQDGFLEQFITPIVKAFHGAEVQ 914
Query: 605 SFYSLPEFEEWKEETTN--WHTYKIKYYK 631
+FY+ E+E W+ + + ++IKYYK
Sbjct: 915 TFYTTSEYEIWRSQLPDDQLSKWRIKYYK 943
Score = 112 bits (280), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RI+PE++ PIIPMVLVNG+EG+G GW T IP +NP ++DN+ R++ E P+ PWYK
Sbjct: 1151 RIQPEFFAPIIPMVLVNGSEGLGMGWRTSIPMYNPTNLIDNLLRLLHNEPMEPLTPWYKG 1210
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKL-EITELQVGKWTTDYKDTLDTLL 767
FKG ++ F G I + + +I+EL V KWT DYK+ L T +
Sbjct: 1211 FKGSVELTPPFTFKTYGVIEPTKKEHIFKISELPVRKWTNDYKELLTTYV 1260
>gi|407419934|gb|EKF38372.1| DNA topoisomerase II, putative [Trypanosoma cruzi marinkellei]
Length = 1488
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 292/667 (43%), Positives = 385/667 (57%), Gaps = 124/667 (18%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYK 86
AN+ +VE+IYQKK+Q EHIL RPD YIG++EP+TE MWL + N M+ R+ T+ PGLYK
Sbjct: 2 ANR-TVEEIYQKKTQHEHILSRPDMYIGTIEPVTEDMWLYDEAENIMKLRKCTWTPGLYK 60
Query: 87 IFDEILVNACDNKQRDP-KMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIF 145
IFDEILVNA DNK RDP IK+ ++ E + V+NNG+GIPV H++ ++VP MIF
Sbjct: 61 IFDEILVNAADNKVRDPLGQTAIKVWIDAERGMVRVYNNGEGIPVQRHREHNLWVPEMIF 120
Query: 146 GHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF 205
G+LLTSSNY+D E KVTGGRNG+GAKL N+FS +F
Sbjct: 121 -------------------------GYLLTSSNYDDTEAKVTGGRNGFGAKLTNVFSKRF 155
Query: 206 VVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVD 265
VET S +K F W++NM + P I D+T +TF PD KF + +DMV
Sbjct: 156 EVETVHSRSRKKFFMRWRNNMLESEEPVITPSEGPDYTVVTFYPDFAKFNLQGFGEDMVH 215
Query: 266 LITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRW 324
++ RR YD A T K ++ +LN K+ +F +YV LY +E Y VN RW
Sbjct: 216 MMRRRVYDVAGCTDKSLRCYLNDTKIACSSFLEYVDLYPMMGEERKAAS---YARVNDRW 272
Query: 325 EVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFG 384
EV + S+ GFQQVSFVNSIATT+GG HV + D ++ ++ E K+K+K
Sbjct: 273 EVCVRVSNIGFQQVSFVNSIATTRGGTHVRYITDQVIAKVTEQAKRKSK----------- 321
Query: 385 NKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT 444
+KP ++ H+++FINCL+ NP FDSQTKE +
Sbjct: 322 --------------------------TEVKPHMIRPHLFVFINCLVENPGFDSQTKETLN 355
Query: 445 LQKGSFGSTC---------------------------------------------VPKLE 459
K FGSTC +PKL+
Sbjct: 356 TPKNRFGSTCDLPPSMIDCILKSSIVERAVEMANSKLTREIASKLRNADRKQILGIPKLD 415
Query: 460 DANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQIL 519
DAN+AG K S CTLILTEGDSAK+L +GL V RD +GVFPLRGK LNVR+AT K+++
Sbjct: 416 DANEAGGKYSHRCTLILTEGDSAKALCTAGLAVKDRDYFGVFPLRGKPLNVRDATLKKVM 475
Query: 520 ENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWP 579
AE + KI+GL +KY++VE LRYG LMIM+DQD DGSHIKGLIIN IHH WP
Sbjct: 476 ACAEFQAVSKIMGLDIRQKYSSVE---RLRYGHLMIMSDQDHDGSHIKGLIINMIHHYWP 532
Query: 580 TLLRLP-FLEEFITPIIKA-TKAREE-----LSFYSLPEFEEWKEETTNW-HTYKIKYYK 631
L++ P FL++FITPI+KA K R + +SF+S+P++ EWK + Y+I+YYK
Sbjct: 533 DLIKTPGFLQQFITPIVKARKKGRSDGDDRAISFFSMPDYFEWKNAIGDGIRNYEIRYYK 592
Query: 632 VVYVTGV 638
+ +G
Sbjct: 593 GLGTSGA 599
Score = 121 bits (304), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 73/107 (68%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP +Y+P+IPMVLVNG GIGTG+ T IPN++P E++DN+ R++RGE+ PMKPWY F
Sbjct: 806 VEPFYYVPVIPMVLVNGTSGIGTGFATNIPNYSPIEVIDNLMRLLRGEEVQPMKPWYFGF 865
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
G I+ +FV G + D ++ITEL +G WT YK L+ L
Sbjct: 866 TGTIEEKEKGKFVSTGCATVRPDGVVQITELPIGTWTQAYKKFLEEL 912
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Query: 830 AAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMER----KNELLKKRDDKMTELNIL 885
A + E DE +T E +DYDYLLGM W+LT E +++L K RD EL L
Sbjct: 1090 AVDEEGDEGNQETPELRRAARDYDYLLGMRLWNLTAEMIARLQSQLQKARD----ELATL 1145
Query: 886 KKKAPTDLWSDDLDALREK 904
+K+ P DLW++DL+ LR +
Sbjct: 1146 EKRTPKDLWAEDLNQLRPR 1164
>gi|71424000|ref|XP_812644.1| DNA topoisomerase II [Trypanosoma cruzi strain CL Brener]
gi|70877452|gb|EAN90793.1| DNA topoisomerase II, putative [Trypanosoma cruzi]
Length = 1476
Score = 531 bits (1369), Expect = e-147, Method: Compositional matrix adjust.
Identities = 292/667 (43%), Positives = 385/667 (57%), Gaps = 124/667 (18%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYK 86
AN+ +VE+IYQKK+Q EHIL RPD YIG++EP+TE MWL + N M+ R+ T+ PGLYK
Sbjct: 2 ANR-TVEEIYQKKTQHEHILSRPDMYIGTIEPVTEDMWLYDEAENIMKLRKCTWTPGLYK 60
Query: 87 IFDEILVNACDNKQRDP-KMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIF 145
IFDEILVNA DNK RDP IK+ ++ E + V+NNG+GIPV H++ ++VP MIF
Sbjct: 61 IFDEILVNAADNKVRDPLGQTAIKVWIDAERGMVRVYNNGEGIPVQRHREHNLWVPEMIF 120
Query: 146 GHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF 205
G+LLTSSNY+D E KVTGGRNG+GAKL N+FS++F
Sbjct: 121 -------------------------GYLLTSSNYDDTEAKVTGGRNGFGAKLTNVFSTRF 155
Query: 206 VVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVD 265
VET S +K F W++NM + P I D+T +TF PD KF + +DMV
Sbjct: 156 EVETVHSRSRKKFFMRWRNNMLESEEPVITPSEGPDYTVVTFYPDFAKFNLQGFGEDMVH 215
Query: 266 LITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRW 324
++ RR YD A T K ++ +LN K+ +F +YV LY +E Y VN RW
Sbjct: 216 MMRRRVYDVAGCTDKSLRCYLNDTKIACSSFLEYVDLYPMMGEERKAAS---YARVNGRW 272
Query: 325 EVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFG 384
EV + S+ GFQQVSFVNSIATT+GG HV + D ++ ++ E K+K+K
Sbjct: 273 EVCVRVSNIGFQQVSFVNSIATTRGGTHVRYITDQVIAKVTEQAKRKSK----------- 321
Query: 385 NKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT 444
+KP ++ H+++FINCL+ NP FDSQTKE +
Sbjct: 322 --------------------------TEVKPHMIRPHLFVFINCLVENPGFDSQTKETLN 355
Query: 445 LQKGSFGSTC---------------------------------------------VPKLE 459
K FGSTC +PKL+
Sbjct: 356 TPKNRFGSTCDLPPSMIDCILKSSIVERAVEMANSKLTREIASKLRNADRKQILGIPKLD 415
Query: 460 DANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQIL 519
DAN+AG K S CTLILTEGDSAK+L +GL V RD +GVFPLRGK LNVR+AT K+++
Sbjct: 416 DANEAGGKYSHRCTLILTEGDSAKALCTAGLAVKDRDYFGVFPLRGKPLNVRDATLKKVM 475
Query: 520 ENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWP 579
AE + KI+GL +KY+ VE LRYG LMIM+DQD DGSHIKGLIIN IHH WP
Sbjct: 476 ACAEFQAVSKIMGLDIRQKYSGVE---RLRYGHLMIMSDQDHDGSHIKGLIINMIHHYWP 532
Query: 580 TLLRLP-FLEEFITPIIKA-TKAREE-----LSFYSLPEFEEWKEETTNW-HTYKIKYYK 631
L++ P FL++FITPI+KA K R + +SF+S+P++ EWK + Y+I+YYK
Sbjct: 533 DLIKTPGFLQQFITPIVKARKKGRSDGDDRAISFFSMPDYFEWKNAIGDGIRNYEIRYYK 592
Query: 632 VVYVTGV 638
+ +G
Sbjct: 593 GLGTSGA 599
Score = 121 bits (303), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 73/107 (68%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP +Y+P+IPMVLVNG GIGTG+ T IPN++P E++DN+ R++RGE+ PMKPWY F
Sbjct: 806 VEPFYYVPVIPMVLVNGTSGIGTGFATNIPNYSPLEVIDNLMRLLRGEEVQPMKPWYFGF 865
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
G I+ +FV G + D ++ITEL +G WT YK L+ L
Sbjct: 866 AGTIEEKEKGKFVSTGCANVRPDGVVQITELPIGTWTQGYKKFLEEL 912
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%)
Query: 836 DEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWS 895
DE +T E +DYDYLLGM W+LT E L + EL L+K+ P DLW+
Sbjct: 1095 DEDNQETPEMRRAARDYDYLLGMRLWNLTAEMIARLQSQLQKARDELAALEKRTPKDLWA 1154
Query: 896 DDLDALREK 904
+DL+ LR +
Sbjct: 1155 EDLNQLRPR 1163
>gi|71417991|ref|XP_810722.1| DNA topoisomerase II [Trypanosoma cruzi strain CL Brener]
gi|70875297|gb|EAN88871.1| DNA topoisomerase II, putative [Trypanosoma cruzi]
Length = 1484
Score = 531 bits (1369), Expect = e-147, Method: Compositional matrix adjust.
Identities = 292/666 (43%), Positives = 385/666 (57%), Gaps = 124/666 (18%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYK 86
AN+ +VE+IYQKK+Q EHIL RPD YIG++EP+TE MWL + N M+ R+ T+ PGLYK
Sbjct: 2 ANR-TVEEIYQKKTQHEHILSRPDMYIGTIEPVTEDMWLYDEAENIMKLRKCTWTPGLYK 60
Query: 87 IFDEILVNACDNKQRDP-KMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIF 145
IFDEILVNA DNK RDP IK+ ++ E + V+NNG+GIPV H++ ++VP MIF
Sbjct: 61 IFDEILVNAADNKVRDPLGQTAIKVWIDAERGMVRVYNNGEGIPVQRHREHNLWVPEMIF 120
Query: 146 GHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF 205
G+LLTSSNY+D E KVTGGRNG+GAKL N+FS++F
Sbjct: 121 -------------------------GYLLTSSNYDDTEAKVTGGRNGFGAKLTNVFSTRF 155
Query: 206 VVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVD 265
VET S +K F W++NM + P I D+T +TF PD KF + +DMV
Sbjct: 156 EVETVHSRSRKKFFMRWRNNMLESEEPVITPSEGPDYTVVTFYPDFAKFNLQGFGEDMVH 215
Query: 266 LITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRW 324
++ RR YD A T K ++ +LN K+ +F +YV LY +E Y VN RW
Sbjct: 216 MMRRRVYDVAGCTDKSLRCYLNDTKIACSSFLEYVDLYPMMGEERKAAS---YARVNGRW 272
Query: 325 EVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFG 384
EV + S+ GFQQVSFVNSIATT+GG HV + D ++ ++ E K+K+K
Sbjct: 273 EVCVRVSNIGFQQVSFVNSIATTRGGTHVRYITDQVIAKVTEQAKRKSK----------- 321
Query: 385 NKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT 444
+KP ++ H+++FINCL+ NP FDSQTKE +
Sbjct: 322 --------------------------TEVKPHMIRPHLFVFINCLVENPGFDSQTKETLN 355
Query: 445 LQKGSFGSTC---------------------------------------------VPKLE 459
K FGSTC +PKL+
Sbjct: 356 TPKNRFGSTCDLPPSMIDCILKSSIVERAVEMANSKLTREIASKLRNADRKQILGIPKLD 415
Query: 460 DANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQIL 519
DAN+AG K S CTLILTEGDSAK+L +GL V RD +GVFPLRGK LNVR+AT K+++
Sbjct: 416 DANEAGGKYSHRCTLILTEGDSAKALCTAGLAVKDRDYFGVFPLRGKPLNVRDATLKKVM 475
Query: 520 ENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWP 579
AE + KI+GL +KY+ VE LRYG LMIM+DQD DGSHIKGLIIN IHH WP
Sbjct: 476 ACAEFQAVSKIMGLDIRQKYSGVE---RLRYGHLMIMSDQDHDGSHIKGLIINMIHHYWP 532
Query: 580 TLLRLP-FLEEFITPIIKA-TKAREE-----LSFYSLPEFEEWKEETTNW-HTYKIKYYK 631
L++ P FL++FITPI+KA K R + +SF+S+P++ EWK + Y+I+YYK
Sbjct: 533 DLIKTPGFLQQFITPIVKARKKGRSDGDDRAISFFSMPDYFEWKNAIGDGIRNYEIRYYK 592
Query: 632 VVYVTG 637
+ +G
Sbjct: 593 GLGTSG 598
Score = 121 bits (304), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 73/107 (68%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP +Y+P+IPMVLVNG GIGTG+ T IPN++P E++DN+ R++RGE+ PMKPWY F
Sbjct: 806 VEPFYYVPVIPMVLVNGTSGIGTGFATNIPNYSPLEVIDNLMRLLRGEEVQPMKPWYFGF 865
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
G I+ +FV G + D ++ITEL +G WT YK L+ L
Sbjct: 866 AGTIEEKEKGKFVSTGCANVRPDGVVQITELPIGTWTQGYKKFLEEL 912
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%)
Query: 836 DEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWS 895
DE +T E +DYDYLLGM W+LT E L + EL L+K+ P DLW+
Sbjct: 1095 DEDNQETPEMRRAARDYDYLLGMRLWNLTAEMIARLQSQLQKARDELAALEKRTPKDLWA 1154
Query: 896 DDLDALREK 904
+DL+ LR +
Sbjct: 1155 EDLNQLRPR 1163
>gi|407843567|gb|EKG01478.1| DNA topoisomerase II, putative [Trypanosoma cruzi]
Length = 1461
Score = 531 bits (1369), Expect = e-147, Method: Compositional matrix adjust.
Identities = 291/666 (43%), Positives = 385/666 (57%), Gaps = 124/666 (18%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYK 86
AN+ +VE+IYQKK+Q EHIL RPD YIG++EP+TE MWL + N M+ R+ T+ PGLYK
Sbjct: 2 ANR-TVEEIYQKKTQHEHILSRPDMYIGTIEPVTEDMWLYDEAENIMKLRKCTWTPGLYK 60
Query: 87 IFDEILVNACDNKQRDP-KMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIF 145
IFDEILVNA DNK RDP IK+ ++ E + V+NNG+GIPV H++ ++VP MIF
Sbjct: 61 IFDEILVNAADNKVRDPLGQTAIKVWIDAERGMVRVYNNGEGIPVQRHREHNLWVPEMIF 120
Query: 146 GHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF 205
G+LLTSSNY+D E KVTGGRNG+GAKL N+FS++F
Sbjct: 121 -------------------------GYLLTSSNYDDTEAKVTGGRNGFGAKLTNVFSTRF 155
Query: 206 VVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVD 265
VET S +K F W++NM + P I D+T +TF PD KF + +DMV
Sbjct: 156 EVETVHSRSRKKFFMRWRNNMLESEEPVITPSEGPDYTVVTFYPDFAKFNLQGFGEDMVH 215
Query: 266 LITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRW 324
++ RR YD A T K ++ +LN K+ +F +YV LY +E Y VN RW
Sbjct: 216 MMRRRVYDVAGCTDKSLRCYLNDTKIACSSFLEYVDLYPMMGEERKAAS---YSRVNGRW 272
Query: 325 EVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFG 384
EV + S+ GFQQVSFVNSIATT+GG HV + D ++ ++ E K+K+K
Sbjct: 273 EVCVRVSNIGFQQVSFVNSIATTRGGTHVRYITDQVIAKVTEQAKRKSK----------- 321
Query: 385 NKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT 444
+KP ++ H+++FINCL+ NP FDSQTKE +
Sbjct: 322 --------------------------TEVKPHMIRPHLFVFINCLVENPGFDSQTKETLN 355
Query: 445 LQKGSFGSTC---------------------------------------------VPKLE 459
K FGSTC +PKL+
Sbjct: 356 TPKNRFGSTCDLPPSMIDCILKSSIVERAVEMANSKLTREIASKLRNADRKQILGIPKLD 415
Query: 460 DANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQIL 519
DAN+AG K+ CTLILTEGDSAK+L +GL V RD +GVFPLRGK LNVR+AT K+++
Sbjct: 416 DANEAGGKHGHRCTLILTEGDSAKALCTAGLAVKDRDYFGVFPLRGKPLNVRDATLKKVM 475
Query: 520 ENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWP 579
AE + KI+GL +KY+ VE LRYG LMIM+DQD DGSHIKGLIIN IHH WP
Sbjct: 476 ACAEFQAVSKIMGLDIRQKYSGVE---RLRYGHLMIMSDQDHDGSHIKGLIINMIHHYWP 532
Query: 580 TLLRLP-FLEEFITPIIKA-TKAREE-----LSFYSLPEFEEWKEETTNW-HTYKIKYYK 631
L++ P FL++FITPI+KA K R + +SF+S+P++ EWK + Y+I+YYK
Sbjct: 533 DLIKTPGFLQQFITPIVKARKKGRSDGDDRAISFFSMPDYFEWKNAIGDGIRNYEIRYYK 592
Query: 632 VVYVTG 637
+ +G
Sbjct: 593 GLGTSG 598
Score = 121 bits (303), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 73/107 (68%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP +Y+P+IPMVLVNG GIGTG+ T IPN++P E++DN+ R++RGE+ PMKPWY F
Sbjct: 806 VEPFYYVPVIPMVLVNGTSGIGTGFATNIPNYSPLEVIDNLMRLLRGEEVQPMKPWYFGF 865
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
G I+ +FV G + D ++ITEL +G WT YK L+ L
Sbjct: 866 TGTIEEKERGKFVSTGCANVRPDGVVQITELPIGTWTQGYKKFLEEL 912
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%)
Query: 836 DEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWS 895
DE +T E +DYDYLLGM W+LT E L + EL L+K+ P DLW+
Sbjct: 1096 DEDNQETPEMRRAARDYDYLLGMRLWNLTAEMIARLQSQLQKARDELAALEKRTPKDLWA 1155
Query: 896 DDLDALREK 904
+DL+ LR +
Sbjct: 1156 EDLNQLRPR 1164
>gi|336270720|ref|XP_003350119.1| TOP2 protein [Sordaria macrospora k-hell]
gi|380095513|emb|CCC06986.1| putative TOP2 protein [Sordaria macrospora k-hell]
Length = 1915
Score = 531 bits (1368), Expect = e-147, Method: Compositional matrix adjust.
Identities = 314/735 (42%), Positives = 404/735 (54%), Gaps = 154/735 (20%)
Query: 21 PKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITY 80
P KKT A K + E +YQK +QLEHIL RPDTYIGSVE + MW+ N+ T ME R+I++
Sbjct: 116 PSKKTGAAKTATE-MYQKLTQLEHILKRPDTYIGSVERSEQKMWVFNKATGLMENRQISF 174
Query: 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
VPGLYKIFDEILVNA DN QRD M +K+++N+E+ ISV NNGKGIPV H EK +V
Sbjct: 175 VPGLYKIFDEILVNAADNSQRDSSMTFLKVSINRESGEISVENNGKGIPVEIHGTEKCYV 234
Query: 141 PTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNI 200
P +IFGHLL SN ++D E K GGRNGYGAKL NI
Sbjct: 235 PELIFGHLLAGSN-------------------------FDDNEKKTVGGRNGYGAKLTNI 269
Query: 201 FSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMT-SL 259
FS +F++E S K +KQ W DNMSK+++P+I S DF +ITF PD +KF M +
Sbjct: 270 FSREFILECQDSVNGKRYKQTWTDNMSKMSTPKITSNKAADFVRITFRPDFSKFGMADGI 329
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQD----EDG 310
D D+ L+ RR YD A + +KV+LNGE L + NF+ Y LY +R + ED
Sbjct: 330 DDDLEALLYRRVYDMAGTVSGIKVWLNGEHLKL-NFKTYCGLYAKAIAKERDEVADGEDV 388
Query: 311 DPVKIIYENVNPR---WEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEV 367
P +I+E WEV SD FQQVSFVN+IATT GG HV+ + D QIIEV
Sbjct: 389 TPATVIFEQQRSEGKLWEVGFTVSDGSFQQVSFVNNIATTSGGSHVNYIAD----QIIEV 444
Query: 368 VKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFIN 427
+ K +LQ K G LK VKN +IFIN
Sbjct: 445 LMK-----------------------ELQRKKG--------KGHGLKTANVKNQFFIFIN 473
Query: 428 CLIVNPTFDSQTKENMTLQKGSFGSTCV-------------------------------- 455
CLI NP F SQTKE +T + FGS C
Sbjct: 474 CLIDNPAFSSQTKEQLTTKPARFGSKCQLGDQFLKKVRQSEAIDNLLSFADKKRDKDLAK 533
Query: 456 -----------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLR 504
KL +AN AG K S +CTLILTEGDSA+ LAV+G ++ ++ GVFPLR
Sbjct: 534 NDGSKRKRISNDKLIEANYAGGKYSQECTLILTEGDSARGLAVAGRAILDPNRIGVFPLR 593
Query: 505 GKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGS 564
GK+LNVR+A+ QIL+N E+ N+ K LGL++ K YT D K LRYG LMIM DQD DGS
Sbjct: 594 GKMLNVRDASADQILKNKEVENIKKFLGLKHGKVYT---DTKDLRYGHLMIMADQDLDGS 650
Query: 565 HIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKA------TKAREELSFYSLPEFEEWKE 617
HIKGL+INF +P+LLR+P F +EFITP++K K ++ F++LP++EEWKE
Sbjct: 651 HIKGLLINFFECQFPSLLRIPNFFQEFITPVVKVWQGPNPRKPQKLQGFFTLPQYEEWKE 710
Query: 618 ETTN-WHTYKIKYYK----------VVYVTGVL---------------LFKMNLHKVTSD 651
N +K KY K +Y T + +F++ K +D
Sbjct: 711 SHKNELRRWKYKYLKGLGSSTTDDAQIYFTNLTKHLKEFDVMTREESEMFELAFSKKKAD 770
Query: 652 SISMFIGRIEPEWYI 666
+ ++ + EP Y+
Sbjct: 771 ARKEWLAKCEPGTYL 785
Score = 107 bits (266), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 81/120 (67%), Gaps = 10/120 (8%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMI------RGED-PL-P 711
IEP+ Y PI+PMVLVNGA+GIGTGW T IPN++P +IV+N+KR + GE+ P P
Sbjct: 935 IEPKVYAPILPMVLVNGADGIGTGWSTSIPNYHPLDIVENLKRRMGRDSSGDGEEKPFEP 994
Query: 712 MKPWYKNFKGEIDYCGDSRFVVNG--EIAILDDDKLEITELQVGKWTTDYKDTLDTLLHG 769
M PW++ +KG + G ++F NG E+ + +++++TEL + WT D+K L+ ++ G
Sbjct: 995 MTPWFRGWKGTPEPDGPNKFKFNGIVEVNPQNPNEVDVTELPIRMWTDDFKSKLEEIIRG 1054
Score = 52.0 bits (123), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 835 DDEAGS-QTQEEEDP---DKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAP 890
D+E G+ + ++EED +DYDYLL M WSLT ER ++L ++ K E + L +
Sbjct: 1205 DEELGAAENEDEEDAVGGARDYDYLLSMPIWSLTFERLDKLKQQIAAKKAEYDELDALSE 1264
Query: 891 TDLWSDDLDAL 901
DLW DLDA
Sbjct: 1265 KDLWCKDLDAF 1275
>gi|325588262|gb|ADZ31963.1| alpha DNA topoisomerase II [Trypanosoma rangeli]
Length = 1455
Score = 531 bits (1367), Expect = e-147, Method: Compositional matrix adjust.
Identities = 291/664 (43%), Positives = 380/664 (57%), Gaps = 123/664 (18%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
K +VE+IYQKK+Q EHIL RPD YIG++EP+TE MW+ + N M+ R+ T+ PGLYKIF
Sbjct: 3 KRTVEEIYQKKTQHEHILARPDMYIGTIEPVTEDMWVYDEAENIMKVRKCTWTPGLYKIF 62
Query: 89 DEILVNACDNKQRDP-KMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGH 147
DEILVNA DNK RDP IK+ ++ E + V+NNG+GIPV H++ ++VP MIF
Sbjct: 63 DEILVNAADNKVRDPLGQTAIKVWIDAERGMVRVYNNGEGIPVQRHREHNLWVPEMIF-- 120
Query: 148 LLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVV 207
G+LLTSSNY+D E KVTGGRNG+GAKL N+FSS+F V
Sbjct: 121 -----------------------GYLLTSSNYDDTEAKVTGGRNGFGAKLTNVFSSRFEV 157
Query: 208 ETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLI 267
ET S +K F W++NM + P I D+T +TF PD KF + +DMV ++
Sbjct: 158 ETVHSRSRKKFFMRWRNNMLESEEPVITPCDGPDYTIVTFYPDFAKFNLQGFGEDMVHMM 217
Query: 268 TRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEV 326
RR YD A T K ++ +LN K+ F +YV LY +E Y VN RWEV
Sbjct: 218 RRRVYDVAGCTDKSLRCYLNDTKIACSTFLEYVDLYPMMGEERKAAS---YARVNGRWEV 274
Query: 327 AIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNK 386
+ S+ GFQQVSFVNSIATT+GG HV + D ++ ++ E K+K+K
Sbjct: 275 CVRVSNIGFQQVSFVNSIATTRGGTHVRYITDQVIAKVTEQAKRKSK------------- 321
Query: 387 FNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ 446
+KP ++ H+++FINCL+ NP FDSQTKE +
Sbjct: 322 ------------------------TEVKPHMIRPHLFVFINCLVENPGFDSQTKETLNTP 357
Query: 447 KGSFGSTC---------------------------------------------VPKLEDA 461
K FGS C +PKL+DA
Sbjct: 358 KARFGSICEFPPSMIDCILKSSVVERAVEMANSKLTREIASKLRNADRKQILGIPKLDDA 417
Query: 462 NDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILEN 521
N+AG K+ CTLILTEGDSAK+L +GL V RD +GVFPLRGK LNVR+A K+++
Sbjct: 418 NEAGGKHGHRCTLILTEGDSAKALCTAGLAVKDRDYFGVFPLRGKPLNVRDAALKKVMAC 477
Query: 522 AEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTL 581
AE + KI+GL SKK T VE LRYG LMIM+DQD DGSHIKGLIIN IHH WP L
Sbjct: 478 AEFQAISKIMGLDISKKQTGVEG---LRYGHLMIMSDQDHDGSHIKGLIINMIHHYWPDL 534
Query: 582 LRLP-FLEEFITPIIKA-TKAREE-----LSFYSLPEFEEWKEETTNW-HTYKIKYYKVV 633
+R P FL++FITPI+KA K R + +SF+S+P++ EWK + Y+I+YYK +
Sbjct: 535 IRAPGFLQQFITPIVKARRKGRGDGDDRAISFFSMPDYFEWKNAIGDGIRNYEIRYYKGL 594
Query: 634 YVTG 637
+G
Sbjct: 595 GTSG 598
Score = 118 bits (296), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 71/107 (66%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP +Y+P+IPMVLVNG GIGTG+ T IPN++P +++DN+ R++RGE+ PMKPWY F
Sbjct: 806 VEPFYYVPVIPMVLVNGTSGIGTGFATNIPNYSPLDVIDNLMRLLRGEEVQPMKPWYFGF 865
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
G I +FV G + D + ITEL VG WT YK L+ L
Sbjct: 866 TGTIKEKEKGKFVSVGCATVRPDGIVHITELPVGTWTQTYKKFLEEL 912
Score = 58.2 bits (139), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 801 EEEIEEVFHDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTF 860
++E EE D A ++ L+ A + +D + E + +DYDYLLGM
Sbjct: 1064 QQEDEEAVEDAANAMTEEVFLTLQ----SAVDAAEDADSGEAPEVQQAARDYDYLLGMRL 1119
Query: 861 WSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
W+LT E L + EL L+K+ P DLW+ DL+ LR +
Sbjct: 1120 WNLTAEMIARLQAQLQKARDELATLQKQTPKDLWAADLNQLRPR 1163
>gi|402591390|gb|EJW85319.1| DNA topoisomerase 2 [Wuchereria bancrofti]
Length = 852
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 280/649 (43%), Positives = 390/649 (60%), Gaps = 107/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITET-MWLMNRETNHMERREITYVPGLYKI 87
K++VEK YQ+ + L+HIL RPD+YIGS E +++ + + ++E VPGL KI
Sbjct: 77 KLAVEK-YQRLTPLKHILYRPDSYIGSAFLSDEQPIYVYDAIMKQIVKKEARIVPGLLKI 135
Query: 88 FDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGH 147
FDEILVNA DNK+RDP+M I + +++E NTIS+WNNG+GIPV H E ++VPTMIFG
Sbjct: 136 FDEILVNAADNKRRDPQMTTIAVNIDKERNTISIWNNGRGIPVEIHPTEGIYVPTMIFGT 195
Query: 148 LLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVV 207
L TSSNY +D E K+ GGRNG+GAKLCNIF ++F V
Sbjct: 196 LFTSSNY-------------------------DDSELKIVGGRNGFGAKLCNIFCTEFSV 230
Query: 208 ETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKD--DFTKITFTPDLTKFKMTSLDKDMVD 265
ET + F Q W++NM+ V P I S + D+T +TF PDL+KFK+++LD+D +
Sbjct: 231 ETCTKQSGLRFFQCWRNNMNDVDDPIISDASTNASDYTCVTFKPDLSKFKLSTLDEDTIQ 290
Query: 266 LITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKI-IYENVNPRW 324
++ RR D A + V VFLNG K+ V F+DYVKL++ + + + Y +VN RW
Sbjct: 291 VMIRRIVDIAGTLDGVNVFLNGTKIEVSGFEDYVKLFSTYTGGNFENSTVPFYCSVNDRW 350
Query: 325 EVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFG 384
++A+A S+ G+ +SFVN+I T KGGRHVD +V+ IV ++ + + ++ GC
Sbjct: 351 QIAVARSNAGYNHISFVNNINTLKGGRHVDYIVNQIVSRLKQEI---SQCCGCE------ 401
Query: 385 NKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT 444
++ Q+KN + IF+N LI NP F+SQ+KE +T
Sbjct: 402 --------------------------KSISAHQIKNRLHIFVNSLIENPAFESQSKEYLT 435
Query: 445 LQKGSFGSTCV------------------------------------------PKLEDAN 462
+FGSTC+ KLEDA
Sbjct: 436 TSVKNFGSTCIIPESFYENFLKDSDIIHHLLCDISQQHATSLNRSMNRSLWDLSKLEDAA 495
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAGTKN +CTLI+TEGDSAK+LAV+GL V+GR +YGVFP+RGKL NVR K ++NA
Sbjct: 496 DAGTKNGYNCTLIITEGDSAKALAVAGLAVIGRKQYGVFPIRGKLTNVRGMDAKMAVQNA 555
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EI+ LV+ILGL++ + Y+ E +K+LRYGRL+IMTDQD DGSHIKGLI+NF+H WP+LL
Sbjct: 556 EISALVRILGLKFGENYSNDEKLKSLRYGRLLIMTDQDPDGSHIKGLIVNFLHVYWPSLL 615
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+ ++ FITP++KA + + SFYS ++E+W+ E + Y IKYYK
Sbjct: 616 KANYVSYFITPLLKAKRGSDVKSFYSTADYEKWRAENPDSVKYSIKYYK 664
>gi|440294606|gb|ELP87606.1| DNA topoisomerase, putative [Entamoeba invadens IP1]
Length = 1306
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 295/653 (45%), Positives = 380/653 (58%), Gaps = 124/653 (18%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMN--RETNHMERREITYVPGLYK 86
K+ +E +Y K S E IL RPDTYIGSVE E++W+ + + M ++ I+Y PGL+K
Sbjct: 5 KVELEDVYVKLSHKEQILTRPDTYIGSVEKNDESVWVFSDGEDGGEMVKKPISYTPGLFK 64
Query: 87 IFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFG 146
IFDEILVNA DN QRD M+ IK VN + ISV+NNGKGIP+ HK EKM++P +IF
Sbjct: 65 IFDEILVNASDNFQRDTNMDTIK--VNIVGDVISVYNNGKGIPIEIHKKEKMYIPELIF- 121
Query: 147 HLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFV 206
GHLLTSSNY D++ KVTGGRNGYGAKL NIFS+ F
Sbjct: 122 ------------------------GHLLTSSNYRDDDKKVTGGRNGYGAKLANIFSNSFE 157
Query: 207 VETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDL 266
+ET S+ K +KQ W NM I +++TK+TFTPD +F+M +++D L
Sbjct: 158 IET--SDGTKVYKQRWTKNMDNKEEAIITEKHCEEYTKVTFTPDYARFQMKGMEEDTKAL 215
Query: 267 ITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEV 326
+ RRAYD A KV++N K+ K F+DY K+Y ++ I+ E RWEV
Sbjct: 216 LIRRAYDIAGCNPGKKVYINKVKVCFKRFEDYAKMYVGKES-------IVSEQAGDRWEV 268
Query: 327 AIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNK 386
+ S QQVSFVNSI T+KGG HVD V++ I K +++ + KKNK
Sbjct: 269 CVCASQGEAQQVSFVNSIFTSKGGTHVDIVLNQICKNLMDKLAKKNKK------------ 316
Query: 387 FNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ 446
G +KPFQVKNH+++F+ CLI NP FDSQTKE + Q
Sbjct: 317 -----------------------GAEIKPFQVKNHLFVFVRCLIENPAFDSQTKETLKTQ 353
Query: 447 KGSFGS--------------------------------------------TCVPKLEDAN 462
FGS T +PKL+DAN
Sbjct: 354 SSKFGSKPVLSDKFFTKLSKLSVMDDILNWAIKKGEQDLSKSGGRKTARITGIPKLDDAN 413
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
AGTK+ CTLILTEGDSAK+LAVSGL VVGRD YGVFPLRGK LN RE + ++ N
Sbjct: 414 KAGTKDGKLCTLILTEGDSAKTLAVSGLSVVGRDYYGVFPLRGKPLNAREISSAKVKNNQ 473
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
E N+ KI+GL+Y KKYT D+ LRYG +MIM DQD DGSHIKGL+IN+ + WP+LL
Sbjct: 474 EFENIAKIMGLRYGKKYT---DLNELRYGCVMIMADQDYDGSHIKGLLINYFNVFWPSLL 530
Query: 583 RLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN---WHTYKIKYYK 631
++ FL EFITPI+K K +EE+SF+++P+F EWKEE + ++IKYYK
Sbjct: 531 KIKNFLVEFITPIVKVKKGKEEISFFTVPQFNEWKEEKIHEGELKKWEIKYYK 583
Score = 118 bits (295), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 78/112 (69%), Gaps = 1/112 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP++Y+PIIPMVLVNGAEGIGTGW T IPN NP ++VDN KR + GE+ PMKPWY+
Sbjct: 792 KIEPKYYVPIIPMVLVNGAEGIGTGWSTDIPNFNPLDLVDNCKRYLNGEELQPMKPWYRG 851
Query: 719 FKGEIDYCGD-SRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHG 769
+ GE+ + + F+ G + ++++EI EL + WT +YK L+ ++
Sbjct: 852 WTGELKENKEGTGFMCYGRWRRVGNNRIEIRELPMHIWTENYKVHLEKMIEA 903
Score = 45.1 bits (105), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
YDYLL M W+LT ER +L++ DD T+++ +K D+W +L + +K
Sbjct: 1067 YDYLLSMKIWTLTYERAKKLMEDCDDLKTQIDEVKTTTVKDMWLKELASFEKK 1119
>gi|328876909|gb|EGG25272.1| DNA topoisomerase II [Dictyostelium fasciculatum]
Length = 1233
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 297/680 (43%), Positives = 394/680 (57%), Gaps = 141/680 (20%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLM-----NRETN-------------H 72
S+E IYQKK+ EH+LLRPD+YIG+++ I + W++ N+ET
Sbjct: 86 SIEDIYQKKTPTEHVLLRPDSYIGTIQRIEDDQWVLSNSEFNQETKKKSSSSSATPVAPF 145
Query: 73 MERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVE 132
+ + Y+PGL KIFDEILVNA DNKQRDP M+ I++ ++ + +IS+ N+G GIPV
Sbjct: 146 IHHIKAKYIPGLLKIFDEILVNAADNKQRDPAMSTIRVDIDADKGSISIMNDGHGIPVSI 205
Query: 133 HKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNG 192
HK EK++V M+ G L++ S N+ND E KV GGRNG
Sbjct: 206 HKGEKIYVVEMVMGSLMSGS-------------------------NFNDAELKVVGGRNG 240
Query: 193 YGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKS---GSKDDFTKITFTP 249
+GAKL NIFSS F VET ++ K + Q WKDNM K P IKS ++ +FT+ITF P
Sbjct: 241 FGAKLTNIFSSDFKVETYDAKSKLLYSQSWKDNMGKREEPIIKSVHPMNQQEFTRITFRP 300
Query: 250 DLTKFKMTSL-DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR--Q 306
DL +F M SL D D++ L+ RR YD AA D+KV+ NG+ + NFQ YV L+ +
Sbjct: 301 DLKRFHMESLRDDDVLKLMERRVYDIAACCPDIKVYFNGQHIQY-NFQSYVSLFEHHLSK 359
Query: 307 DEDGDPV----KIIYENVNPRWEVAIAPSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIV 361
++ +P ++ NV RW++ +A SD G F QVSFVNSI T KGG HV+ + D +V
Sbjct: 360 HQEKNPSDTADNFVFANVGDRWKIGLATSDTGQFMQVSFVNSINTLKGGTHVNFIADQVV 419
Query: 362 KQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNH 421
+ I + +KKK DL ++P +K+H
Sbjct: 420 RYISDRLKKKYNDL------------------------------------EIRPMNIKHH 443
Query: 422 IWIFINCLIVNPTFDSQTKENMTLQKGSFGST---------------------------- 453
+ +F+NCLI NP+FDSQTKE +T + +FGS
Sbjct: 444 LALFVNCLIDNPSFDSQTKETLTTKYQNFGSQPEIPEPVLAAFVKNSKILEKIAGWVLMK 503
Query: 454 --------------------CVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVV 493
+ KL+DAN AG + S CTLILTEGDSAKSLAVSGLGV+
Sbjct: 504 QQAELVHSSSTRTSKASLLKNIHKLDDANWAGGQKSKLCTLILTEGDSAKSLAVSGLGVI 563
Query: 494 GRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRL 553
GRDKYGVFPLRGKLLNVR+ T KQ+L N EINNL ILGL + KKY E M LRYG++
Sbjct: 564 GRDKYGVFPLRGKLLNVRDVTPKQLLNNEEINNLTNILGLSHKKKYIDEESMADLRYGKI 623
Query: 554 MIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFE 613
MIMTDQD DGSHIKGLIINFIH+ WP LL+ F+EEF+TPIIK +K E+ +F+++ ++
Sbjct: 624 MIMTDQDNDGSHIKGLIINFIHYFWPELLQRDFVEEFVTPIIKVSKGSEKKAFFTMNDYH 683
Query: 614 EWKEETTNWHT--YKIKYYK 631
W + + + T + IKYYK
Sbjct: 684 NWVKNSQSGVTKGWTIKYYK 703
Score = 84.7 bits (208), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 92/173 (53%), Gaps = 20/173 (11%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPL-PMKPWYKN 718
I+P +Y+PI+PM+LVNG++GIG G +P ++P +++D + ++ + + + PWY+
Sbjct: 914 IQPNYYVPILPMILVNGSDGIGVGMSNSVPLYSPIDLIDYLLNLLNNQKQMKALVPWYRG 973
Query: 719 FKGEI---DYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDEV 775
F G I + F +G I + L I++L +GKWT DYK L+ L+ EKD +
Sbjct: 974 FTGTIVRGSNAVNGSFKTSGVITRV-GRTLVISDLPIGKWTVDYKVVLNDLV---EKDFI 1029
Query: 776 ---HPGPGRKSHPRPIAPKSYKIDDDSEE-EEIEEVFHDNELAKPQKTGPQLE 824
H G S S+ I +++ EEI+E+ DNEL K L
Sbjct: 1030 KSYHDGNTENS-------VSFTIHFTNDQLEEIDEM-TDNELIDKFKLNSSLH 1074
>gi|429327596|gb|AFZ79356.1| DNA topoisomerase II, putative [Babesia equi]
Length = 1170
Score = 528 bits (1361), Expect = e-146, Method: Compositional matrix adjust.
Identities = 296/658 (44%), Positives = 393/658 (59%), Gaps = 128/658 (19%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E+ YQKKSQLEHILLRPDTYIGS E + MW+ + E N M + YVPGLYKIFDE
Sbjct: 6 TIEERYQKKSQLEHILLRPDTYIGSTEMHNQQMWVYDTEKNRMVYENVDYVPGLYKIFDE 65
Query: 91 ILVNACD---NKQRDP---KMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMI 144
+LVNA D +Q DP +M CIK+++++ET I V+N+G+ IP+ H + KM+VP MI
Sbjct: 66 VLVNAGDVFARQQSDPSLERMTCIKVSISRETGAIVVYNDGEPIPIEVHSEHKMYVPQMI 125
Query: 145 FGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSK 204
F G LLTS NY+D E+++TGGRNGYGAKL NIFS
Sbjct: 126 F-------------------------GELLTSDNYDDSEERITGGRNGYGAKLANIFSKS 160
Query: 205 FVVETSCSEYKKSFKQVWKDNMSKVTS-PEIKSGSKDDFTKITFTPDLTKFKMTSLDKDM 263
F V + +K FK W DNM+K P+I +DF KITF PD +F +T++D
Sbjct: 161 FTVSVGNKKKRKKFKMTWTDNMTKTQGEPKIVPYQGNDFVKITFIPDYKRFNLTTIDDGT 220
Query: 264 VDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPR 323
+ L+T+R YD A +T VKVFLN E++P+K+F+ YV LY + D +KI +E V+ R
Sbjct: 221 LKLLTKRVYDIAGTT-GVKVFLNNERIPIKDFKQYVDLYFE---STLDIIKI-HEKVH-R 274
Query: 324 WEVAIAPSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
WEV ++ SD F+QVSFVN+I+T KGG HV V D +++ + + V KNK
Sbjct: 275 WEVVVSASDDNTFKQVSFVNNISTIKGGSHVTHVTDPLIQALCKKVNSKNK--------- 325
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
GG+ +KP Q++NH+++FINC IVNP FDSQTKE
Sbjct: 326 --------------------------GGLEVKPSQIRNHLFVFINCQIVNPAFDSQTKET 359
Query: 443 MTLQKGSFGS----------------------------------------------TCVP 456
+T ++ FGS +P
Sbjct: 360 LTTKQTKFGSKYTMGERVLGQVLKSRITDNILRWVHERANIELKRKMKVSKTTDRLMGIP 419
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KLEDAN AG + IDCTLILTEGDSAK+ ++GL VVGRDKYG+FPL+GKLLNVR+A++K
Sbjct: 420 KLEDANKAGGRFGIDCTLILTEGDSAKTSCLAGLSVVGRDKYGIFPLKGKLLNVRDASYK 479
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
Q+ N EI N++KI+GL +KK + + + LRYG L+IMTDQD DGSHIKGL+IN H
Sbjct: 480 QLTHNLEIQNILKIMGLDITKK--DLSNPQGLRYGSLLIMTDQDYDGSHIKGLLINLFHC 537
Query: 577 NWPTLLR-LPFLEEFITPIIKATKAREELSFYSLPEFEEWK--EETTNWHTYKIKYYK 631
WP LL+ F+ EFITPIIKA K +SF+++ +F WK ++ + WH IKYYK
Sbjct: 538 FWPKLLQHRGFIREFITPIIKAKKGDNTISFFTIEDFNRWKIGQDLSTWH---IKYYK 592
Score = 120 bits (300), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 78/108 (72%), Gaps = 1/108 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP +Y+P+IPMVLVNG+EGIGTG+ T+IPN+NP +I+ N+KR+I ++ LPM PWY+ +
Sbjct: 802 IEPYYYVPVIPMVLVNGSEGIGTGFSTQIPNYNPLDIIANLKRLINNQEMLPMIPWYRKY 861
Query: 720 KGEIDYCGDSRFVVNGEIAILDD-DKLEITELQVGKWTTDYKDTLDTL 766
G I+ F G+ ++DD + ITEL + +WT DYK+ L++L
Sbjct: 862 SGTIEPNEKGGFDCMGKFTVMDDFGIVNITELPIHRWTNDYKEFLESL 909
Score = 42.4 bits (98), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
DY+YLL + WSLT+E +L + K +L + + T LW +DLD L
Sbjct: 1074 DYNYLLSLPLWSLTLEHIKKLNDDYNAKQEQLQRIINTSATQLWQEDLDIL 1124
>gi|294657090|ref|XP_459406.2| DEHA2E01738p [Debaryomyces hansenii CBS767]
gi|199432439|emb|CAG87617.2| DEHA2E01738p [Debaryomyces hansenii CBS767]
Length = 1411
Score = 528 bits (1360), Expect = e-146, Method: Compositional matrix adjust.
Identities = 298/662 (45%), Positives = 390/662 (58%), Gaps = 125/662 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEHIL RPDTYIGSVE MW + M +E+ VPGLYKIFDEILVNA
Sbjct: 45 YQKLSQLEHILKRPDTYIGSVERSPIEMWCFDPIAESMVYKEVNIVPGLYKIFDEILVNA 104
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK +DP M IK+ ++ E N I V N+GKGIPV H EK+++P +IFG+LLTSSNY+
Sbjct: 105 ADNKIKDPSMKNIKVKIDPENNLIEVMNDGKGIPVEIHDKEKIYIPELIFGNLLTSSNYD 164
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D +E KVTGGRNG+GAKLCNIFS++F++ET+
Sbjct: 165 D-------------------------DEKKVTGGRNGFGAKLCNIFSTEFILETADLNTG 199
Query: 216 KSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
+KQ W +NMS ++ P+I K SK ++TK+TF PDL+KF MTSLD++ + ++TRR YD
Sbjct: 200 FLYKQTWTNNMSNISKPKITKLKSKREYTKVTFKPDLSKFGMTSLDEETLSVLTRRVYDL 259
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYT---DRQDEDGDPV--------KIIYENVNPR 323
+ + ++LN +KL ++NF+ YV++Y ++ D +P+ I++E N R
Sbjct: 260 CGTVNNCNIYLNDKKLNIRNFKAYVEMYVKAIKERNPDPEPMDGTIQNYTTIVHEVFNDR 319
Query: 324 WEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLF 383
WEVA A SD F QVSFVNSIATT GG HV V D I+ ++I
Sbjct: 320 WEVAFAVSDGSFNQVSFVNSIATTAGGTHVKHVSDQIITKLI------------------ 361
Query: 384 GNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENM 443
TL + +K +VKN++++F+NCLI NP F SQTKE +
Sbjct: 362 ---------------ATLAKKEKGKKKLMIKTQEVKNNMFLFVNCLIENPAFTSQTKEQL 406
Query: 444 TLQKGSFGS------------------TCV------------------------------ 455
T + FG T +
Sbjct: 407 TTKVSQFGGKPSEKIAISEQFINKILKTSIVDKIRSIANANEDKALQKVDGSRKSRIKGQ 466
Query: 456 PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATH 515
KL DAN AGTK CTLILTEGDSA SLAV+GL VVGR+ YG FPLRGKLLNVREA+
Sbjct: 467 VKLVDANRAGTKEGHKCTLILTEGDSALSLAVAGLAVVGRNYYGCFPLRGKLLNVREAST 526
Query: 516 KQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIH 575
Q+ +N EIN L +I+GLQ+ K Y ++E++ TLRYG +MIMTDQDQDGSHIKGLIINF+
Sbjct: 527 DQVSKNVEINALKQIIGLQHKKHY-SLENINTLRYGHIMIMTDQDQDGSHIKGLIINFLE 585
Query: 576 HNWPTLLRLP-FLEEFITPIIKATKAR-----EELSFYSLPEFEEWKEETTNWHTYKIKY 629
++P LL++P FL EFITPI+K T R + + FY++PEFE+W++ + KY
Sbjct: 586 TSFPGLLQVPGFLLEFITPIVKVTVNRRGSGKQVIPFYTMPEFEKWRDTEGLTCRWTQKY 645
Query: 630 YK 631
YK
Sbjct: 646 YK 647
Score = 125 bits (314), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 82/118 (69%), Gaps = 3/118 (2%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+P++PM+LVNG+EGIGTGW T +P NP +IV+NIK+++ GE+ M PWY+ +
Sbjct: 857 VEPEWYLPVLPMLLVNGSEGIGTGWSTNVPPFNPTDIVNNIKKLMNGEEMNEMSPWYRGW 916
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDEVHP 777
+GEI G RF V G I D+ ++EITE+ V WT + K + LL+G ++V P
Sbjct: 917 EGEIVANGKDRFRVIGRIEQTDETEVEITEIPVKTWTNNMK---EFLLNGLGTEKVKP 971
Score = 69.3 bits (168), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 39/52 (75%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
YDYLLGMT WSLT ER +LLK++ DK +ELNIL K+ DLW++DLD E
Sbjct: 1161 YDYLLGMTIWSLTRERYEKLLKQKGDKESELNILLSKSAKDLWNEDLDDFLE 1212
>gi|322695778|gb|EFY87581.1| DNA topoisomerase 2 [Metarhizium acridum CQMa 102]
Length = 1653
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 296/676 (43%), Positives = 388/676 (57%), Gaps = 132/676 (19%)
Query: 21 PKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITY 80
P K T + + ++YQK +QLEHI+ RPDTYIGSVE + MW+ N+ T+ ME + ITY
Sbjct: 121 PTKPTSKSSKTATEMYQKLTQLEHIIKRPDTYIGSVEKTDQQMWVYNKTTSQMEYKNITY 180
Query: 81 VPGLYKIFDEILVNACDNKQRDPK-MNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
VPG YKIFDEI+VNA DN QR+ M +K+ +N+ET ISV NNGKGIP+V H+ EK++
Sbjct: 181 VPGFYKIFDEIMVNAADNSQREGSGMTFMKVNINRETGEISVENNGKGIPIVIHEKEKIY 240
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCN 199
+P MIF GHLL SN++D E K GGRNGYGAKLCN
Sbjct: 241 IPEMIF-------------------------GHLLAGSNFDDNEKKTVGGRNGYGAKLCN 275
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKM-TS 258
+FS +F VE + K +KQ W DNM K+ +I S DF +ITF PD +F M
Sbjct: 276 VFSKEFTVECQDAGNGKKYKQTWTDNMQKMQKAKITSSKSADFVRITFKPDYDRFGMPEG 335
Query: 259 LDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR------QDEDGDP 312
+D D+ L+ RR YD A + V+V+LNGE++ +++F+ Y LY +E G P
Sbjct: 336 IDDDLEALLYRRVYDMAGTVHGVRVYLNGEQIKLRDFKAYCDLYAKSIAAERTAEEGGTP 395
Query: 313 ---VKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVK 369
V+I + +PRWEVA SD FQQVSFVNSIATT GG HV+ + D I +++ +
Sbjct: 396 TCTVEIDKDKSHPRWEVAFTVSDGTFQQVSFVNSIATTTGGTHVNYIADQITGSLLKALD 455
Query: 370 KKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCL 429
KK K G +LK ++NHI+IFINC
Sbjct: 456 KKKK------------------------------------GHSLKQSHLRNHIFIFINCF 479
Query: 430 IVNPTFDSQTKENMTLQKGSFGSTCV---------------------------------- 455
I NP F+SQTKE +T + FGS CV
Sbjct: 480 IENPAFNSQTKEQLTTKVSQFGSKCVLGDAFLKAIAKSDAIENIMDFAQKKADKMLSKSD 539
Query: 456 ---------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGK 506
KL +AN AGT+ +CTLILTEGDSAK LAVSG ++ DK GVFPLRGK
Sbjct: 540 GSKRARVSNAKLVEANLAGTRRGHECTLILTEGDSAKGLAVSGRAILDPDKIGVFPLRGK 599
Query: 507 LLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHI 566
LLNVR+A+ QI +N EI N+ + LGL++ + YT D K+LRYG LMIMTDQD DGSHI
Sbjct: 600 LLNVRDASLDQITKNQEIQNIKQFLGLKHKQVYT---DTKSLRYGHLMIMTDQDHDGSHI 656
Query: 567 KGLIINFIHHNWPTLLRLP-FLEEFITPIIKA------TKAREELSFYSLPEFEEWKE-- 617
KGL+INF+ +P+LL++P FL+EFITPI+K K + SF++ P+++EWKE
Sbjct: 657 KGLLINFLQVQFPSLLKIPKFLQEFITPIVKVWQGPDPKKPQRLKSFFTQPQYDEWKESH 716
Query: 618 --ETTNWHTYKIKYYK 631
E + W + KY+K
Sbjct: 717 KAELSRWQS---KYFK 729
Score = 106 bits (264), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 79/124 (63%), Gaps = 12/124 (9%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMI-------RGEDPL- 710
RIEPE Y PI+PMVLVNGA+GIGTGW T IPN++P +IV N+KR + E P
Sbjct: 938 RIEPEVYSPILPMVLVNGADGIGTGWSTTIPNYHPADIVKNLKRRMGRLDEDDAEEKPFE 997
Query: 711 PMKPWYKNFKGEIDYCGDSRFVVNGEIAILDD---DKLEITELQVGKWTTDYKDTLDTLL 767
M PW++ +KG + G R+ NG IA +D +++ ITEL + WT D+K L+ ++
Sbjct: 998 TMTPWFRGWKGNPEAAGPDRYKFNG-IASQNDQNPNEIIITELPIRMWTDDFKAKLEKVI 1056
Query: 768 HGAE 771
G++
Sbjct: 1057 SGSD 1060
>gi|400603233|gb|EJP70831.1| topoisomerase IV [Beauveria bassiana ARSEF 2860]
Length = 1602
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 287/669 (42%), Positives = 376/669 (56%), Gaps = 128/669 (19%)
Query: 24 KTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPG 83
K K S + YQK +QLEHI+ RPDTYIGSVE + MW+ N+E ME + I++VPG
Sbjct: 103 KPAGKKKSATETYQKLTQLEHIIKRPDTYIGSVESTEQQMWVYNKEAQLMEYKTISFVPG 162
Query: 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTM 143
+KIFDEI+VNA D KQR M IK+ +++E+ ISV NNGKGIPV H EK+++P +
Sbjct: 163 FFKIFDEIMVNAADVKQRHASMTYIKVNIDRESGQISVENNGKGIPVEMHDKEKIYIPEL 222
Query: 144 IFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSS 203
IFGHLL SN+ +DEE K GGRNGYGAKLCN+FS+
Sbjct: 223 IFGHLLAGSNF-------------------------DDEEKKTVGGRNGYGAKLCNVFST 257
Query: 204 KFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMT-SLDKD 262
+F +E S K +KQ W DNMSK+ +I S DF +ITF PD +F M+ +D D
Sbjct: 258 EFNLECQDSTNGKRYKQTWTDNMSKMGKAKITSNKTSDFVRITFMPDYKRFGMSDGIDDD 317
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR------QDEDGDP---V 313
+ L+ RR YD A + + +KV LNGE + + F+ Y LY +E G+P V
Sbjct: 318 LESLLYRRVYDLAGTIRGIKVHLNGEVIKIPTFKAYCDLYAKSIAKERVAEEGGNPTCNV 377
Query: 314 KIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNK 373
+I E +PRWEV A SD FQQVSFVN+IATT GG HV+ + D I +++ + K+ K
Sbjct: 378 EIDKEKTHPRWEVGFAVSDGTFQQVSFVNNIATTSGGTHVNYIADQITASLLKTLNKRKK 437
Query: 374 DLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNP 433
G LK ++NHI+IFINC I NP
Sbjct: 438 ------------------------------------GHTLKQSHLRNHIFIFINCFIDNP 461
Query: 434 TFDSQTKENMTLQKGSFGSTCV-------------------------------------- 455
F SQTKE MT + FGS CV
Sbjct: 462 AFTSQTKEQMTTKASLFGSKCVLGEQFLKKIAQSEAVQNIMDFAEKKADKMMAKSDGSKR 521
Query: 456 -----PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNV 510
KL +AN AG++ +CTLILTEGDSAK LAVSG ++ D+ GVFPLRGKLLNV
Sbjct: 522 SRVSNAKLVEANLAGSRRGHECTLILTEGDSAKGLAVSGRAILDPDRIGVFPLRGKLLNV 581
Query: 511 REATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLI 570
R+A+ QI +N EI N+ + LGL++ + YT D K+LRYG LMIM DQD DGSHIKGL+
Sbjct: 582 RDASIDQITKNQEIQNIKQFLGLKHKQNYT---DTKSLRYGHLMIMADQDHDGSHIKGLL 638
Query: 571 INFIHHNWPTLLRLP-FLEEFITPIIKATKAREE------LSFYSLPEFEEWKE----ET 619
INF+ +P+LL++P F EF+TPI+K + + +F++ PEF EWKE E
Sbjct: 639 INFLQVQFPSLLQIPDFFREFVTPIMKVWQGSDPKKPTKLQTFFTQPEFSEWKESHKHEL 698
Query: 620 TNWHTYKIK 628
+ WH+ +K
Sbjct: 699 SRWHSKYLK 707
Score = 109 bits (273), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 78/123 (63%), Gaps = 12/123 (9%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMI-------RGEDPL-P 711
IEPE Y PIIPM+LVNGA+GIGTGW T IPN++P +IV N+KR + E P P
Sbjct: 917 IEPEVYTPIIPMILVNGADGIGTGWSTSIPNYHPTDIVKNLKRRMGRLNLAEEEELPFEP 976
Query: 712 MKPWYKNFKGEIDYCGDSRFVVNGEIAILDD---DKLEITELQVGKWTTDYKDTLDTLLH 768
M PW++ +KG + G R+ NG IA +D +++ ITEL + WT D+K L+ ++
Sbjct: 977 MMPWFRGWKGTPEAAGPDRYKFNG-IAYQNDQNPNEVVITELPIRVWTDDFKTKLEKIIS 1035
Query: 769 GAE 771
G E
Sbjct: 1036 GTE 1038
Score = 63.5 bits (153), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 816 PQKTGPQLERQER-QAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKK 874
P K G + E +E A++ +DD +G+ + KDYDYLL M WSLT ER +LL
Sbjct: 1176 PSKPGAKAEEEELGNASDADDDSSGAL----DAGSKDYDYLLSMAIWSLTAERLQKLLDA 1231
Query: 875 RDDKMTELNILKKKAPTDLWSDDLDAL 901
K E + L+ K+ DLW +DLDAL
Sbjct: 1232 IAKKKAEHDELQAKSEKDLWCEDLDAL 1258
>gi|125540787|gb|EAY87182.1| hypothetical protein OsI_08583 [Oryza sativa Indica Group]
Length = 1486
Score = 525 bits (1352), Expect = e-145, Method: Compositional matrix adjust.
Identities = 294/654 (44%), Positives = 378/654 (57%), Gaps = 156/654 (23%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E++YQKK+QLEHILLRPDTYIGSVE T +W+ E M R +TYVPGLYKIFDE
Sbjct: 27 TIEEMYQKKTQLEHILLRPDTYIGSVEKHTAQLWVY--EDGAMVSRSVTYVPGLYKIFDE 84
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNKQRDP M+ +++ ++ + ISV+NNG GIPV H++E ++VP MI
Sbjct: 85 ILVNAADNKQRDPSMDSLRVEIDADEGRISVYNNGDGIPVEIHQEEGVYVPEMI------ 138
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
FGHLLTSSNY+D K TGGRNGYGAKL NIFS++FV+ET+
Sbjct: 139 -------------------FGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFVIETA 179
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
+K +KQV+ +NM K + P+I K +++T++TF PDL KF MT L+ D+V L+ +
Sbjct: 180 DGRRQKKYKQVFSENMGKKSEPQITKCKQGENWTRVTFKPDLAKFNMTHLENDVVALMRK 239
Query: 270 RAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVK---IIYENVNPRWE 325
R D A + K VKV L+ +K+PV +F DYVKLY +D D V I + VN RWE
Sbjct: 240 RVVDMAGTLGKTVKVELDHQKVPVHSFSDYVKLYIKSASKDRDDVNELPSISQKVNDRWE 299
Query: 326 VAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
V ++ S+ FQQVSFVN IAT KGG HVD V + I ++ +V K+NK+
Sbjct: 300 VCVSLSEGQFQQVSFVNRIATIKGGTHVDYVTNQIATHVMNIVNKRNKN----------- 348
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTL 445
+K VK+H+W+F+N LI NP FDSQTKE +T
Sbjct: 349 -------------------------AHMKAHNVKSHLWVFVNALIDNPAFDSQTKETLTT 383
Query: 446 QKGSFGSTC--------------------------------------------VPKLEDA 461
++ SFGS C +PKLEDA
Sbjct: 384 RQASFGSKCELSDDFLKKVGSSAIVLNLLSWAEFKLSKELQKTDGSKRSRLTGIPKLEDA 443
Query: 462 NDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILEN 521
N AG K+S +CTLILTEGDSAK+LA++G+ VVGRD YGVFPLRGKLLNVREA+HKQI+EN
Sbjct: 444 NGAGGKDSNNCTLILTEGDSAKALAMAGISVVGRDYYGVFPLRGKLLNVREASHKQIMEN 503
Query: 522 AEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTL 581
AEI N+ +ILGLQ+ K+Y + K LRYG LMIMTDQ
Sbjct: 504 AEIQNIKQILGLQHGKQYDST---KGLRYGHLMIMTDQ---------------------- 538
Query: 582 LRLPFLEEFITPIIKATKAREE---LSFYSLPEFEEWKEET-TNWHTYKIKYYK 631
AT R++ L FYS+PE+E+WKE N + IKYYK
Sbjct: 539 ---------------ATNKRDKKIVLPFYSMPEYEQWKESLGGNASGWSIKYYK 577
Score = 133 bits (334), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 75/108 (69%), Gaps = 4/108 (3%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY+PI+PMVLVNG+EGIGTGW T IPN+NPR+IV N++R++ E PM PWY+ F
Sbjct: 787 IEPTWYVPILPMVLVNGSEGIGTGWSTFIPNYNPRDIVANLRRLLNDEPVEPMDPWYRGF 846
Query: 720 KGEID----YCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTL 763
KG I G + V G I ++DD L ITEL + +W+ DYK+ L
Sbjct: 847 KGSIQKTGTKAGGVSYTVTGIIEVVDDTTLRITELPIRRWSQDYKEFL 894
Score = 50.4 bits (119), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 80/189 (42%), Gaps = 24/189 (12%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDD-------LDALRE 903
DY+YLL M +LT+ER +L+ ++ E+ LK+ P LW D LDAL E
Sbjct: 1096 DYEYLLSMAIGTLTLERVQQLIAEKSRMENEVAELKRTRPKSLWMRDLDAFEKELDALDE 1155
Query: 904 KDKIHPCP-GGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAPPPTKASPVKKKK 962
KD + R G + + R + + S G A P +KK
Sbjct: 1156 KDSMDAEERRATRNAGGGAAPKAAPKRRPRKTATNTQAAESSDGNAAAPAVPKPAAPRKK 1215
Query: 963 PAAKRPAPKSDSSDLSDSDGDSDFASRKKKTAAAKKAKPAKKES------EYSSTVCLFK 1016
PA K + L+DS+ D D+ + K AA KK +PAKK S E + L
Sbjct: 1216 PAGK--------ASLADSE-DEDYVAAIPKPAAQKK-QPAKKASTQLSDDEDDEVLALKD 1265
Query: 1017 RFGRRNCND 1025
R N +D
Sbjct: 1266 RLAAYNLDD 1274
>gi|125583360|gb|EAZ24291.1| hypothetical protein OsJ_08043 [Oryza sativa Japonica Group]
Length = 1487
Score = 525 bits (1352), Expect = e-145, Method: Compositional matrix adjust.
Identities = 294/654 (44%), Positives = 378/654 (57%), Gaps = 156/654 (23%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E++YQKK+QLEHILLRPDTYIGSVE T +W+ E M R +TYVPGLYKIFDE
Sbjct: 27 TIEEMYQKKTQLEHILLRPDTYIGSVEKHTAQLWVY--EDGAMVSRSVTYVPGLYKIFDE 84
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNKQRDP M+ +++ ++ + ISV+NNG GIPV H++E ++VP MI
Sbjct: 85 ILVNAADNKQRDPSMDSLRVEIDADEGRISVYNNGDGIPVEIHQEEGVYVPEMI------ 138
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
FGHLLTSSNY+D K TGGRNGYGAKL NIFS++FV+ET+
Sbjct: 139 -------------------FGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFVIETA 179
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
+K +KQV+ +NM K + P+I K +++T++TF PDL KF MT L+ D+V L+ +
Sbjct: 180 DGRRQKKYKQVFSENMGKKSEPQITKCKQGENWTRVTFKPDLAKFNMTHLENDVVALMRK 239
Query: 270 RAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVK---IIYENVNPRWE 325
R D A + K VKV L+ +K+PV +F DYVKLY +D D V I + VN RWE
Sbjct: 240 RVVDMAGTLGKTVKVELDHQKVPVHSFSDYVKLYIKSASKDRDDVNELPSISQKVNDRWE 299
Query: 326 VAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
V ++ S+ FQQVSFVN IAT KGG HVD V + I ++ +V K+NK+
Sbjct: 300 VCVSLSEGQFQQVSFVNRIATIKGGTHVDYVTNQIATHVMNIVNKRNKN----------- 348
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTL 445
+K VK+H+W+F+N LI NP FDSQTKE +T
Sbjct: 349 -------------------------AHMKAHNVKSHLWVFVNALIDNPAFDSQTKETLTT 383
Query: 446 QKGSFGSTC--------------------------------------------VPKLEDA 461
++ SFGS C +PKLEDA
Sbjct: 384 RQASFGSKCELSDDFLKKVGSSAIVLNLLSWAEFKLSKELQKTDGSKRSRLTGIPKLEDA 443
Query: 462 NDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILEN 521
N AG K+S +CTLILTEGDSAK+LA++G+ VVGRD YGVFPLRGKLLNVREA+HKQI+EN
Sbjct: 444 NGAGGKDSNNCTLILTEGDSAKALAMAGISVVGRDYYGVFPLRGKLLNVREASHKQIMEN 503
Query: 522 AEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTL 581
AEI N+ +ILGLQ+ K+Y + K LRYG LMIMTDQ
Sbjct: 504 AEIQNIKQILGLQHGKQYDST---KGLRYGHLMIMTDQ---------------------- 538
Query: 582 LRLPFLEEFITPIIKATKAREE---LSFYSLPEFEEWKEET-TNWHTYKIKYYK 631
AT R++ L FYS+PE+E+WKE N + IKYYK
Sbjct: 539 ---------------ATNKRDKKIVLPFYSMPEYEQWKESLGGNASGWSIKYYK 577
Score = 132 bits (333), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 75/108 (69%), Gaps = 4/108 (3%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY+PI+PMVLVNG+EGIGTGW T IPN+NPR+IV N++R++ E PM PWY+ F
Sbjct: 787 IEPTWYVPILPMVLVNGSEGIGTGWSTFIPNYNPRDIVANLRRLLNDEPVEPMDPWYRGF 846
Query: 720 KGEID----YCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTL 763
KG I G + V G I ++DD L ITEL + +W+ DYK+ L
Sbjct: 847 KGSIQKTGTKAGGVSYTVTGIIEVVDDTTLRITELPIRRWSQDYKEFL 894
Score = 55.8 bits (133), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 83/196 (42%), Gaps = 37/196 (18%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDD-------LDALRE 903
DY+YLL M +LT+ER +L+ ++ E+ LK+ P LW D LDAL E
Sbjct: 1096 DYEYLLSMAIGTLTLERVQQLIAEKGRMENEVAELKRTRPKSLWMRDLDAFEKELDALDE 1155
Query: 904 KDKIHP--------CPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAPPPTKA 955
KD + GG A KR+ R +N + S G A P
Sbjct: 1156 KDSMDAEERRATRNAGGGAAPNKAAPKRRPRKTATNT------QAAESSDGNAAAPAVPK 1209
Query: 956 SPVKKKKPAAKRPAPKSDSSDLSDSDGDSDFASRKKKTAAAKKAKPAKKES------EYS 1009
+KKPA K + L+DS+ D D+ + K AA KK +PAKK S E
Sbjct: 1210 PAAPRKKPAGK--------ASLADSE-DEDYIAAIPKPAAQKK-QPAKKASTQLSDDEDD 1259
Query: 1010 STVCLFKRFGRRNCND 1025
+ L R N +D
Sbjct: 1260 EVLALKDRLAAYNLDD 1275
>gi|322707413|gb|EFY98991.1| DNA topoisomerase 2 [Metarhizium anisopliae ARSEF 23]
Length = 1647
Score = 524 bits (1350), Expect = e-145, Method: Compositional matrix adjust.
Identities = 296/676 (43%), Positives = 386/676 (57%), Gaps = 132/676 (19%)
Query: 21 PKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITY 80
P K T + + ++YQK +QLEHI+ RPDTYIGSVE + MW+ N+ET+ M + I++
Sbjct: 112 PTKPTSKSSKTATEMYQKLTQLEHIIKRPDTYIGSVEKTDQQMWVYNKETSQMVYKNISF 171
Query: 81 VPGLYKIFDEILVNACDNKQRDPK-MNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
VPG YKIFDEI+VNA DN QR+ M +K+ +N+ T I+V NNGKGIP+V H+ EK++
Sbjct: 172 VPGFYKIFDEIMVNAADNSQREGSGMTYMKVNINRATGEINVENNGKGIPIVIHEKEKIY 231
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCN 199
+P MIF GHLL SN++D E K GGRNGYGAKLCN
Sbjct: 232 IPEMIF-------------------------GHLLAGSNFDDNEKKTVGGRNGYGAKLCN 266
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKM-TS 258
+FS +F VE S K +KQ W DNM K+ +I S DF +ITF PD +F M
Sbjct: 267 VFSQEFTVECQDSGNGKRYKQTWTDNMQKMQKAKITSNKSADFVRITFKPDYDRFGMPEG 326
Query: 259 LDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR------QDEDGDP 312
+D D+ L+ RR YD A + VKV+LNGE++ +K+F+ Y LY +E G P
Sbjct: 327 IDDDLEALLYRRVYDMAGTVHGVKVYLNGEQIKLKDFKAYCDLYAKSIAAERTAEEGGTP 386
Query: 313 ---VKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVK 369
V I + +PRWEVA SD FQQVSFVNSIATT GG HV+ + D I +++ +
Sbjct: 387 TCTVDIDKDKSHPRWEVAFTVSDGTFQQVSFVNSIATTTGGTHVNYIADQITGSLLKALD 446
Query: 370 KKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCL 429
KK K G +LK ++NHI+IFINC
Sbjct: 447 KKKK------------------------------------GHSLKQSHLRNHIFIFINCF 470
Query: 430 IVNPTFDSQTKENMTLQKGSFGSTCV---------------------------------- 455
I NP F+SQTKE MT + FGS CV
Sbjct: 471 IENPAFNSQTKEQMTTKVSQFGSKCVLGDNFLKAIAKSDAIENIMDFAQKKADKMLSKSD 530
Query: 456 ---------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGK 506
KL +AN AGT+ +CTLILTEGDSAK LAVSG ++ DK GVFPLRGK
Sbjct: 531 GSKRARVSNAKLVEANLAGTRRGHECTLILTEGDSAKGLAVSGRAILDPDKIGVFPLRGK 590
Query: 507 LLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHI 566
LLNVR+A+ QI +N EI N+ + LGL++ + YT D K+LRYG LMIMTDQD DGSHI
Sbjct: 591 LLNVRDASLDQITKNQEIQNIKQFLGLKHKQVYT---DTKSLRYGHLMIMTDQDHDGSHI 647
Query: 567 KGLIINFIHHNWPTLLRLP-FLEEFITPIIKA------TKAREELSFYSLPEFEEWKE-- 617
KGL+INF+ +P+LL++P FL+EFITPI+K K + SF++ P+++EWKE
Sbjct: 648 KGLLINFLQVQFPSLLKIPQFLQEFITPIVKVWQGPDPKKPQRLKSFFTQPQYDEWKESH 707
Query: 618 --ETTNWHTYKIKYYK 631
E + W + KY+K
Sbjct: 708 KAELSRWQS---KYFK 720
Score = 106 bits (264), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 78/122 (63%), Gaps = 12/122 (9%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMI-----RGEDPLP-- 711
RIEPE Y PI+PMVLVNGA+GIGTGW T IPN++P +IV N+KR + G + P
Sbjct: 929 RIEPEVYSPILPMVLVNGADGIGTGWSTTIPNYHPADIVKNLKRRMGRLDEDGAEEKPFE 988
Query: 712 -MKPWYKNFKGEIDYCGDSRFVVNGEIAILDD---DKLEITELQVGKWTTDYKDTLDTLL 767
M PW++ +KG + G R+ NG IA +D +++ ITEL + WT D+K L+ ++
Sbjct: 989 TMTPWFRGWKGSPEAAGPDRYKFNG-IASQNDQNPNEIIITELPIRMWTDDFKAKLEKVI 1047
Query: 768 HG 769
G
Sbjct: 1048 SG 1049
Score = 47.4 bits (111), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
DYDYLL M WSLT ER ++L + K ++ L K+ DLW DLD
Sbjct: 1222 DYDYLLSMPIWSLTQERLDKLKDAINKKKDDIEGLSAKSEKDLWCADLD 1270
>gi|346323318|gb|EGX92916.1| DNA topoisomerase 2 [Cordyceps militaris CM01]
Length = 1614
Score = 522 bits (1344), Expect = e-144, Method: Compositional matrix adjust.
Identities = 284/675 (42%), Positives = 382/675 (56%), Gaps = 128/675 (18%)
Query: 24 KTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPG 83
K+ K + YQK +QLEHI+ RPDTYIGSVE + MW+ N+ET ME + I++VPG
Sbjct: 107 KSAGKKKTATDTYQKLTQLEHIIKRPDTYIGSVESTEQQMWVFNKETQLMEYKTISFVPG 166
Query: 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTM 143
+KIFDEI+VNA D KQR M+ IK+ +++E+ ISV NNGKGIPV H+ EK+++P +
Sbjct: 167 FFKIFDEIMVNAADVKQRYTTMSFIKVNIDRESGQISVENNGKGIPVEIHEKEKIYIPEL 226
Query: 144 IFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSS 203
IFGHLL SN+ +DEE K GGRNGYGAKLCN+FS+
Sbjct: 227 IFGHLLAGSNF-------------------------DDEEKKTVGGRNGYGAKLCNVFST 261
Query: 204 KFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKM-TSLDKD 262
+F +E S K +KQ W DNMSK+ +I S DF +ITF PD +F M +D+D
Sbjct: 262 EFTLECQDSGNGKRYKQTWTDNMSKMGKAKITSNKTSDFVRITFMPDYKRFGMPNGIDED 321
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD------RQDEDGDP---V 313
+ L+ RR YD A + + +KV LNGE + + F+ Y LY +E G+P V
Sbjct: 322 LESLLYRRVYDMAGTIRGIKVHLNGEVIKIPTFKAYCDLYAKSIAKERSAEEGGEPTCSV 381
Query: 314 KIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNK 373
+I + +PRWEV A SD FQQVSFVN+IATT GG HV+ + D I +++ + K+ K
Sbjct: 382 EIDKDKSHPRWEVGFAVSDGTFQQVSFVNNIATTSGGTHVNYIADQITASLLKTLNKRKK 441
Query: 374 DLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNP 433
G LK ++NHI+IF+NC I NP
Sbjct: 442 ------------------------------------GHTLKQSHLRNHIFIFVNCFIDNP 465
Query: 434 TFDSQTKENMTLQKGSFGSTCV-------------------------------------- 455
F SQTKE MT + FGS C
Sbjct: 466 AFTSQTKEQMTTKASLFGSKCTLGDQFLKKIAQSEAVENIMSFAEKKADKMMAKSDGNKR 525
Query: 456 -----PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNV 510
KL +AN AG++ +CTLILTEGDSAK LAVSG ++ D+ GVFPLRGKLLNV
Sbjct: 526 SRVSNNKLVEANLAGSRRGHECTLILTEGDSAKGLAVSGRAILDPDRIGVFPLRGKLLNV 585
Query: 511 REATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLI 570
R+A+ QI +N EI N+ + LGL++ + YT D K+LRYG LMIM DQD DGSHIKGL+
Sbjct: 586 RDASIDQITKNQEIQNIKQFLGLKHKQNYT---DTKSLRYGHLMIMADQDHDGSHIKGLL 642
Query: 571 INFIHHNWPTLLRLP-FLEEFITPIIKA------TKAREELSFYSLPEFEEWKEETTNWH 623
INF+ +P+LL++P F EF+TPI+K K ++ SF++ PEF EWK+ H
Sbjct: 643 INFLQVQFPSLLQIPDFFREFVTPIMKVWQGSDPKKPTKQHSFFTQPEFNEWKQS----H 698
Query: 624 TYKIKYYKVVYVTGV 638
+++ ++ Y+ G+
Sbjct: 699 QHELGRWQSKYLKGL 713
Score = 108 bits (270), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 78/123 (63%), Gaps = 12/123 (9%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGED-------PL-P 711
IEPE Y PIIPM+LVNGA+GIGTGW T IPN++P +IV N+KR + E P P
Sbjct: 921 IEPEVYAPIIPMILVNGADGIGTGWSTSIPNYHPTDIVKNLKRRMGREGFTEDDGHPFEP 980
Query: 712 MKPWYKNFKGEIDYCGDSRFVVNGEIAILDD---DKLEITELQVGKWTTDYKDTLDTLLH 768
M PW++ +KG + G R+ NG IA +D +++ +TEL + WT D+K L+ ++
Sbjct: 981 MMPWFRGWKGTPEAAGPDRYKFNG-IAHQNDQNPNEVVVTELPIRMWTDDFKAKLEKVIS 1039
Query: 769 GAE 771
G E
Sbjct: 1040 GGE 1042
Score = 68.6 bits (166), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 98/209 (46%), Gaps = 33/209 (15%)
Query: 816 PQKTGPQLERQER-QAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKK 874
P+KTG + + +E QA+ EDDEA ++ +DYDYLL M WSLT ER +LL+
Sbjct: 1180 PKKTGAKADEEELGQASNAEDDEA------QDGGARDYDYLLSMPIWSLTAERLEKLLEA 1233
Query: 875 RDDKMTELNILKKKAPTDLWSDDLDA-LREKDK------------------IHPCPGGNR 915
K E + L+ K+ DLW +DLDA + E DK + G +
Sbjct: 1234 IAKKKAEHDELQAKSEKDLWCEDLDAFMAEWDKQVAIDAEIQTKIRRLGRRVSKKIGAGK 1293
Query: 916 TRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAPPPTKASP----VKKKKPAAKRPAPK 971
+R +K + Y+P + + + +K++ + KP K+
Sbjct: 1294 SR--KIKDEDDYEPEKKSRAKGKAAVAKPAAAKPKVESKSAQRFADMFSSKPRVKKEV-D 1350
Query: 972 SDSSDLSDSDGDSDFASRKKKTAAAKKAK 1000
++ +LSD+ D DFA+ +K AA K+ K
Sbjct: 1351 AEVVELSDNFSDDDFAALSRKPAAPKRTK 1379
>gi|167391639|ref|XP_001739872.1| DNA topoisomerase [Entamoeba dispar SAW760]
gi|165896290|gb|EDR23749.1| DNA topoisomerase, putative [Entamoeba dispar SAW760]
Length = 1351
Score = 521 bits (1343), Expect = e-144, Method: Compositional matrix adjust.
Identities = 292/657 (44%), Positives = 382/657 (58%), Gaps = 128/657 (19%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNR-----ETNHMERREITYVPG 83
K +E IY K S E IL RPDTYIGS+E E +WL E M ++ I+ PG
Sbjct: 5 KEKLEDIYVKLSHKEQILTRPDTYIGSIERNDEQVWLYEEPTEQYEEGRMVQKVISLAPG 64
Query: 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTM 143
L+KI+DEILVNA DN QRDPKM IK+T+ E N+I+V+NNGKGIP+ HK E +++P +
Sbjct: 65 LFKIYDEILVNASDNFQRDPKMTTIKVTI--EGNSITVYNNGKGIPIEIHKKENIYIPEL 122
Query: 144 IFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSS 203
IF GHLLTSSNY D++ KVTGGRNGYGAKL NIFS+
Sbjct: 123 IF-------------------------GHLLTSSNYKDDDKKVTGGRNGYGAKLANIFST 157
Query: 204 KFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKD 262
KF +ET + KK +KQ WK+NMS PEI+S K +++TK+TFTPD +F+M ++ D
Sbjct: 158 KFSIET--CDGKKIYKQTWKNNMSDKEEPEIESVKKVEEYTKVTFTPDYKRFQMKGMEDD 215
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNP 322
L+ RRAYD A ++++NG+K+ KNF +Y ++Y GD I+ E
Sbjct: 216 ARRLLIRRAYDIAGCNPGKRIWINGKKVCFKNFAEYARMYV------GDE-PIVSEKAGE 268
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RW++ + S Q+SFVNSI T+ GG HVD V + K + E +KK NK
Sbjct: 269 RWDICVCASKGEPMQISFVNSINTSHGGTHVDYVTGLMTKYLAEKMKKLNKK-------- 320
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
G +KPFQ+KNH+++F+N LI NP FDSQTKE
Sbjct: 321 ---------------------------GAEIKPFQIKNHLFVFVNSLIENPAFDSQTKET 353
Query: 443 MTLQKGSFGS--------------------------------------------TCVPKL 458
+ Q FGS T +PKL
Sbjct: 354 LKTQVNKFGSKPTLSDKFFKELGKLSVVDDILAWAIKKGEMDLNKSGGKKTARITGIPKL 413
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
+DAN AGTK CTLILTEGDSAK+LAVSGL VVGRD YGVFPLRGK LN RE ++
Sbjct: 414 DDANKAGTKEGNLCTLILTEGDSAKTLAVSGLSVVGRDYYGVFPLRGKPLNAREIAPSKV 473
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNW 578
EN E N+ KI+GL+Y K Y+++ + LRYG +MIM DQD DGSHIKGL+IN+ H W
Sbjct: 474 KENQEFENIAKIMGLRYGKVYSSINE---LRYGSVMIMADQDFDGSHIKGLLINYFHTFW 530
Query: 579 PTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKE---ETTNWHTYKIKYYK 631
P+LL++ FL EFITPI+K + ++E+SF++LP+F EWK+ + ++IKYYK
Sbjct: 531 PSLLKIDNFLVEFITPIVKVKRGKQEISFFTLPQFNEWKDARIQEGQLKKWEIKYYK 587
Score = 111 bits (278), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 74/112 (66%), Gaps = 1/112 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEP++Y PIIP VLVNGA+GIGTGW T + N+NP ++VDN +R + GE+ MKPW++
Sbjct: 796 RIEPKYYCPIIPTVLVNGADGIGTGWSTAVSNYNPLDLVDNCRRYLNGEEFKEMKPWFRG 855
Query: 719 FKGEIDYCGD-SRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHG 769
+ G++ D S + G+ L DDK+EITEL + WT YK L+ +
Sbjct: 856 WTGQLRKNKDGSGYDCYGKWRRLADDKIEITELPIQIWTDTYKQHLEKCIEA 907
Score = 51.6 bits (122), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
YDYLLGM W+LT E+ +L++ DD T+++ +K D+W DLDA +K
Sbjct: 1069 YDYLLGMKIWTLTYEKAKKLMEDCDDLKTQIDTVKTTPVKDMWLKDLDAFVKK 1121
>gi|407035214|gb|EKE37602.1| DNA gyrase/topoisomerase IV, A subunit domain containing protein
[Entamoeba nuttalli P19]
Length = 1350
Score = 521 bits (1342), Expect = e-144, Method: Compositional matrix adjust.
Identities = 292/657 (44%), Positives = 384/657 (58%), Gaps = 128/657 (19%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNH-----MERREITYVPG 83
K +E IY K S E IL RPDTYIGSVE E +W+ + M ++ I+ PG
Sbjct: 5 KEKLEDIYVKLSHKEQILTRPDTYIGSVERNDEQVWIYEEPSEQYNEGRMIQKVISLAPG 64
Query: 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTM 143
L+KI+DEILVNA DN QRDPKM IK+T+ E N+I+V+NNGKGIP+ HK E +++P +
Sbjct: 65 LFKIYDEILVNASDNFQRDPKMTTIKVTI--EGNSITVYNNGKGIPIEIHKKEHIYIPEL 122
Query: 144 IFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSS 203
IF GHLLTSSNY D++ KVTGGRNGYGAKL NIFS+
Sbjct: 123 IF-------------------------GHLLTSSNYKDDDKKVTGGRNGYGAKLANIFST 157
Query: 204 KFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKD 262
KF +ET + KK +KQ WK+NMS PEI+S K +++TK+TFTPD +F+M +++D
Sbjct: 158 KFSIET--CDGKKIYKQTWKNNMSDKEEPEIESVKKVEEYTKVTFTPDYKRFQMKGMEED 215
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNP 322
L+ RRAYD A ++++NG+K+ KNF +Y ++Y GD I+ E
Sbjct: 216 ARMLLIRRAYDIAGCNPGKRIWINGKKVCFKNFAEYARMYV------GDE-PIVSEKAGE 268
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RW++ + S Q+SFVNSI T+ GG HVD V + K + E +KK NK
Sbjct: 269 RWDICVCASKGEPMQISFVNSINTSHGGTHVDYVTGLMTKYLAEKMKKLNKK-------- 320
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
G +KPFQ+KNH+++F+N LI NP FDSQTKE
Sbjct: 321 ---------------------------GAEIKPFQIKNHLFVFVNSLIENPAFDSQTKET 353
Query: 443 MTLQKGSFGS--------------------------------------------TCVPKL 458
+ Q FGS T +PKL
Sbjct: 354 LKTQVNKFGSKPSLSDKFFKELGKLSVVDDILAWAIKKGEMDLNKSGGKKTARITGIPKL 413
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
+DAN AGTK CTLILTEGDSAK+LAVSGL VVGRD YGVFPLRGK LN RE ++
Sbjct: 414 DDANKAGTKEGNLCTLILTEGDSAKTLAVSGLSVVGRDYYGVFPLRGKPLNAREIAPSKV 473
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNW 578
EN E N+ KI+GL+Y K YT++++ LRYG +MIM DQD DGSHIKGL+IN+ H W
Sbjct: 474 KENHEFENIAKIMGLRYGKVYTSIDE---LRYGSVMIMADQDFDGSHIKGLLINYFHTFW 530
Query: 579 PTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKE---ETTNWHTYKIKYYK 631
P+LL++ FL EFITPI+K + ++E+SF++LP+F EWK+ + ++IKYYK
Sbjct: 531 PSLLKIDNFLVEFITPIVKVKRGKQEISFFTLPQFNEWKDARIQEGQLKKWEIKYYK 587
Score = 110 bits (276), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 74/112 (66%), Gaps = 1/112 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEP++Y PIIP VLVNGA+GIGTGW T + N+NP ++VDN +R + GE+ MKPW++
Sbjct: 796 RIEPKYYFPIIPTVLVNGADGIGTGWSTAVSNYNPLDLVDNCRRYLNGEEFKEMKPWFRG 855
Query: 719 FKGEIDYCGD-SRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHG 769
+ G++ D S + G+ L +DK+EITEL + WT YK L+ +
Sbjct: 856 WTGQLRKNKDGSGYDCYGKWRRLSEDKIEITELPIQIWTDSYKQHLEKCIEA 907
Score = 49.3 bits (116), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
YDYLL M W+LT E+ +L++ DD T+++ +K D+W DLDA +K
Sbjct: 1069 YDYLLSMKIWTLTYEKAKKLMEDCDDLKTQIDTIKTTPVKDMWLKDLDAFVKK 1121
>gi|67472224|ref|XP_651972.1| DNA topoisomerase II [Entamoeba histolytica HM-1:IMSS]
gi|40804954|gb|AAR91745.1| topoisomerase II [Entamoeba histolytica]
gi|56468768|gb|EAL46584.1| DNA topoisomerase II, putative [Entamoeba histolytica HM-1:IMSS]
Length = 1349
Score = 521 bits (1341), Expect = e-144, Method: Compositional matrix adjust.
Identities = 293/657 (44%), Positives = 384/657 (58%), Gaps = 128/657 (19%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNH-----MERREITYVPG 83
K +E IY K S E IL RPDTYIGSVE E +W+ + M ++ I+ PG
Sbjct: 5 KEKLEDIYVKLSHKEQILTRPDTYIGSVERNDEQVWIYEEPSEQYSEGRMIQKVISLAPG 64
Query: 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTM 143
L+KI+DEILVNA DN QRDPKM IK+T+ E N+I+V+NNGKGIP+ HK E +++P +
Sbjct: 65 LFKIYDEILVNASDNFQRDPKMTTIKVTI--EGNSITVYNNGKGIPIEIHKKEHIYIPEL 122
Query: 144 IFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSS 203
IF GHLLTSSNY D++ KVTGGRNGYGAKL NIFS+
Sbjct: 123 IF-------------------------GHLLTSSNYKDDDKKVTGGRNGYGAKLANIFST 157
Query: 204 KFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKD 262
KF +ET C + KK +KQ WK+NMS PEI+S K +++TK+TFTPD +F+M ++ D
Sbjct: 158 KFSIET-C-DGKKIYKQTWKNNMSDKEEPEIESVKKVEEYTKVTFTPDYKRFQMKGMEDD 215
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNP 322
L+ RRAYD A ++++NG+K+ KNF +Y ++Y GD I+ E
Sbjct: 216 ARMLLIRRAYDIAGCNPGKRIWINGKKVCFKNFAEYARMYV------GDE-PIVSEKAGE 268
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RW++ + S Q+SFVNSI T+ GG HVD V + K + E +KK NK
Sbjct: 269 RWDICVCASKGEPMQISFVNSINTSHGGTHVDYVTGLMTKYLAEKMKKLNKK-------- 320
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
G +KPFQ+KNH+++F+N LI NP FDSQTKE
Sbjct: 321 ---------------------------GAEIKPFQIKNHLFVFVNSLIENPAFDSQTKET 353
Query: 443 MTLQKGSFGS--------------------------------------------TCVPKL 458
+ Q FGS T +PKL
Sbjct: 354 LKTQVNKFGSKPSLSDKFFKELGKLSVVDDILAWAIKKGEMDLNKSGGKKTARITGIPKL 413
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
+DAN AGTK CTLILTEGDSAK+LAVSGL VVGRD YGVFPLRGK LN RE ++
Sbjct: 414 DDANKAGTKEGNLCTLILTEGDSAKTLAVSGLSVVGRDYYGVFPLRGKPLNAREIAPSKV 473
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNW 578
EN E N+ KI+GL+Y K YT++++ LRYG +MIM DQD DGSHIKGL+IN+ H W
Sbjct: 474 KENHEFENIAKIMGLRYGKVYTSIDE---LRYGSVMIMADQDFDGSHIKGLLINYFHTFW 530
Query: 579 PTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKE---ETTNWHTYKIKYYK 631
P+LL++ FL EFITPI+K + ++E+SF++LP+F EWK+ + ++IKYYK
Sbjct: 531 PSLLKIDNFLVEFITPIVKVKRGKQEISFFTLPQFNEWKDARIQEGQLKKWEIKYYK 587
Score = 110 bits (276), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 74/112 (66%), Gaps = 1/112 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEP++Y PIIP VLVNGA+GIGTGW T + N+NP ++VDN +R + GE+ MKPW++
Sbjct: 796 RIEPKYYFPIIPTVLVNGADGIGTGWSTAVSNYNPLDLVDNCRRYLNGEEFKEMKPWFRG 855
Query: 719 FKGEIDYCGD-SRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHG 769
+ G++ D S + G+ L +DK+EITEL + WT YK L+ +
Sbjct: 856 WTGQLRKNKDGSGYDCYGKWRRLSEDKIEITELPIQIWTDSYKQHLEKCIEA 907
Score = 49.3 bits (116), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
YDYLL M W+LT E+ +L++ DD T+++ +K D+W DLDA +K
Sbjct: 1069 YDYLLSMKIWTLTYEKAKKLMEDCDDLKTQIDTIKTTPVKDMWLKDLDAFVKK 1121
>gi|449706302|gb|EMD46177.1| DNA topoisomerase II, putative [Entamoeba histolytica KU27]
Length = 1422
Score = 520 bits (1340), Expect = e-144, Method: Compositional matrix adjust.
Identities = 293/657 (44%), Positives = 384/657 (58%), Gaps = 128/657 (19%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNH-----MERREITYVPG 83
K +E IY K S E IL RPDTYIGSVE E +W+ + M ++ I+ PG
Sbjct: 5 KEKLEDIYVKLSHKEQILTRPDTYIGSVERNDEQVWIYEEPSEQYSEGRMIQKVISLAPG 64
Query: 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTM 143
L+KI+DEILVNA DN QRDPKM IK+T+ E N+I+V+NNGKGIP+ HK E +++P +
Sbjct: 65 LFKIYDEILVNASDNFQRDPKMTTIKVTI--EGNSITVYNNGKGIPIEIHKKEHIYIPEL 122
Query: 144 IFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSS 203
IF GHLLTSSNY D++ KVTGGRNGYGAKL NIFS+
Sbjct: 123 IF-------------------------GHLLTSSNYKDDDKKVTGGRNGYGAKLANIFST 157
Query: 204 KFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKD 262
KF +ET C + KK +KQ WK+NMS PEI+S K +++TK+TFTPD +F+M ++ D
Sbjct: 158 KFSIET-C-DGKKIYKQTWKNNMSDKEEPEIESVKKVEEYTKVTFTPDYKRFQMKGMEDD 215
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNP 322
L+ RRAYD A ++++NG+K+ KNF +Y ++Y GD I+ E
Sbjct: 216 ARMLLIRRAYDIAGCNPGKRIWINGKKVCFKNFAEYARMYV------GDE-PIVSEKAGE 268
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RW++ + S Q+SFVNSI T+ GG HVD V + K + E +KK NK
Sbjct: 269 RWDICVCASKGEPMQISFVNSINTSHGGTHVDYVTGLMTKYLAEKMKKLNKK-------- 320
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
G +KPFQ+KNH+++F+N LI NP FDSQTKE
Sbjct: 321 ---------------------------GAEIKPFQIKNHLFVFVNSLIENPAFDSQTKET 353
Query: 443 MTLQKGSFGS--------------------------------------------TCVPKL 458
+ Q FGS T +PKL
Sbjct: 354 LKTQVNKFGSKPSLSDKFFKELGKLSVVDDILAWAIKKGEMDLNKSGGKKTARITGIPKL 413
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
+DAN AGTK CTLILTEGDSAK+LAVSGL VVGRD YGVFPLRGK LN RE ++
Sbjct: 414 DDANKAGTKEGNLCTLILTEGDSAKTLAVSGLSVVGRDYYGVFPLRGKPLNAREIAPSKV 473
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNW 578
EN E N+ KI+GL+Y K YT++++ LRYG +MIM DQD DGSHIKGL+IN+ H W
Sbjct: 474 KENHEFENIAKIMGLRYGKVYTSIDE---LRYGSVMIMADQDFDGSHIKGLLINYFHTFW 530
Query: 579 PTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKE---ETTNWHTYKIKYYK 631
P+LL++ FL EFITPI+K + ++E+SF++LP+F EWK+ + ++IKYYK
Sbjct: 531 PSLLKIDNFLVEFITPIVKVKRGKQEISFFTLPQFNEWKDARIQEGQLKKWEIKYYK 587
Score = 110 bits (276), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 74/112 (66%), Gaps = 1/112 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEP++Y PIIP VLVNGA+GIGTGW T + N+NP ++VDN +R + GE+ MKPW++
Sbjct: 796 RIEPKYYFPIIPTVLVNGADGIGTGWSTAVSNYNPLDLVDNCRRYLNGEEFKEMKPWFRG 855
Query: 719 FKGEIDYCGD-SRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHG 769
+ G++ D S + G+ L +DK+EITEL + WT YK L+ +
Sbjct: 856 WTGQLRKNKDGSGYDCYGKWRRLSEDKIEITELPIQIWTDSYKQHLEKCIEA 907
Score = 49.3 bits (116), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
YDYLL M W+LT E+ +L++ DD T+++ +K D+W DLDA +K
Sbjct: 1069 YDYLLSMKIWTLTYEKAKKLMEDCDDLKTQIDTIKTTPVKDMWLKDLDAFVKK 1121
>gi|403180025|ref|XP_003888499.1| DNA topoisomerase II [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375165610|gb|EHS62949.1| DNA topoisomerase II [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 649
Score = 520 bits (1339), Expect = e-144, Method: Compositional matrix adjust.
Identities = 283/609 (46%), Positives = 362/609 (59%), Gaps = 135/609 (22%)
Query: 17 NGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERR 76
NGP+ KK A++ YQK SQLEH+L RPDTYIGSVE I + MW+ ++E M +
Sbjct: 97 NGPAGSKKKTASET-----YQKLSQLEHVLKRPDTYIGSVEAIRQFMWIFDKEKKTMVNK 151
Query: 77 EITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDE 136
EI++VPGLYKI DEILVNA DNKQRD M+ +K+T++ E N ISV NNGKGIP+ H+ E
Sbjct: 152 EISFVPGLYKIVDEILVNAADNKQRDDSMDTLKVTIDSEKNIISVMNNGKGIPIEIHETE 211
Query: 137 KMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAK 196
++++P +IFGHLL SN++D EE K TGGRNGYGAK
Sbjct: 212 QIYIPELIFGHLLAGSNFDD-------------------------EEKKTTGGRNGYGAK 246
Query: 197 LCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFK 255
L NI+S++F+VE + + K +KQ++K+NMS P+I K +++TKI+F PDL KF
Sbjct: 247 LANIYSTEFIVEAADKQTAKKYKQIFKNNMSVKEKPKITENKKGEEYTKISFKPDLVKFN 306
Query: 256 M---TSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDED--- 309
+ L DM LI++R YD A + ++VKV+LN E++ + F+ YV++YT +E
Sbjct: 307 LPAENGLAGDMEALISKRVYDMAGTLRNVKVWLNDERIKLTGFKKYVEMYTSGVNEAIKG 366
Query: 310 ---------GDP------VKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVD 354
G P IIYE RWE+A APSD FQQVSF NSIATTKGG HV+
Sbjct: 367 SAAKALEAPGSPGNGATKTPIIYEECGKRWEIAFAPSDGQFQQVSFCNSIATTKGGTHVE 426
Query: 355 AVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALK 414
+V +V++IIE V KK L LK
Sbjct: 427 HIVKQLVEKIIESVNKKKAKL------------------------------------TLK 450
Query: 415 PFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTCV------------------- 455
P+QV+NH+W+F+NCLI NPTFDSQTKENMTL FGS CV
Sbjct: 451 PYQVRNHLWVFVNCLIENPTFDSQTKENMTLGMSKFGSKCVMTEEFMKKVMKSGVIDSVM 510
Query: 456 -------------------------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGL 490
KLEDAN+AGT+ + DCTLILTEGDSAKSLAV+GL
Sbjct: 511 DFAKFKEEAALKKTDGSKRSRITGIVKLEDANNAGTRKAADCTLILTEGDSAKSLAVAGL 570
Query: 491 GVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRY 550
V+GRD YGVFPLRGKLLNVREA+ Q+L NAEI ++ +I+GLQ KKY + + +LRY
Sbjct: 571 SVIGRDNYGVFPLRGKLLNVREASGAQLLNNAEIQHIKQIMGLQQGKKYASRD---SLRY 627
Query: 551 GRLMIMTDQ 559
G LMIMTDQ
Sbjct: 628 GSLMIMTDQ 636
>gi|367053477|ref|XP_003657117.1| DNA topoisomerase 2-like protein [Thielavia terrestris NRRL 8126]
gi|347004382|gb|AEO70781.1| DNA topoisomerase 2-like protein [Thielavia terrestris NRRL 8126]
Length = 1705
Score = 520 bits (1339), Expect = e-144, Method: Compositional matrix adjust.
Identities = 294/679 (43%), Positives = 388/679 (57%), Gaps = 132/679 (19%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K P + S + YQK +QLEHI+ RPDTYIGSVE + + MW+ N+ ME R I+YVP
Sbjct: 113 KPAPKSTKSATETYQKLTQLEHIIKRPDTYIGSVERMDQKMWVFNKAEKLMENRTISYVP 172
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DN QRD M +K+ V++ T ISV NNGKGIP+ H+ EK ++P
Sbjct: 173 GLYKIFDEILVNAADNSQRDSSMTYLKVNVDRATGEISVENNGKGIPIEIHEKEKCYIPE 232
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF GHLLT SNY+D E K GGRNGYGAKL NIFS
Sbjct: 233 LIF-------------------------GHLLTGSNYDDNEKKTVGGRNGYGAKLTNIFS 267
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKM-TSLDK 261
+F +E S +K +KQ W DNMSK+ +I + DF K++F PD +F M +D
Sbjct: 268 QRFTIELQDSHNEKRYKQTWTDNMSKMEKAKITTSKSSDFVKVSFLPDYKRFGMENGIDD 327
Query: 262 DMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR-QDEDGD-------PV 313
D+ LI RR YD A + VKV+LNGE L + NF+ Y +LY +E GD PV
Sbjct: 328 DLEALIYRRVYDMAGTVSGVKVWLNGEHLKI-NFKTYCELYAKSIANERGDAAVDGEKPV 386
Query: 314 -KIIYENV--NPR-WEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVK 369
K+ ++ V N R W++ SD FQQVSFVN+IATT GG HV+ + D I + + + +
Sbjct: 387 AKVEFDQVRDNGRLWQIGFTVSDGSFQQVSFVNNIATTSGGTHVNYIADQICEALGKELN 446
Query: 370 KKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCL 429
KK K G +LKP +NHI+IFINCL
Sbjct: 447 KKKK------------------------------------GHSLKPSHFRNHIFIFINCL 470
Query: 430 IVNPTFDSQTKENMTLQKGSFGSTCV---------------------------------- 455
I NP+F+SQTKE +T + +FGS CV
Sbjct: 471 IDNPSFNSQTKEQLTTKISAFGSKCVLSDQFLKKVKASEAIANIMEFADRKADKMMAKSD 530
Query: 456 ---------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGK 506
KL DAN AGTK +CTLILTEGDSA+ LAV+G V+ D+ GVFPLRGK
Sbjct: 531 GNKRSRISNDKLIDANWAGTKRGHECTLILTEGDSARGLAVAGRAVLDPDRIGVFPLRGK 590
Query: 507 LLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHI 566
+LNVR+A+ QI++N EI N+ K LGL++ ++Y +D K LRYG LMIM DQD DGSHI
Sbjct: 591 MLNVRDASIDQIMKNKEIENIKKFLGLKHKQEY---KDTKGLRYGHLMIMADQDLDGSHI 647
Query: 567 KGLIINFIHHNWPTLLRL-PFLEEFITPIIKA------TKAREELSFYSLPEFEEWKEET 619
KGL+INF+ +P+LLR+ F +EFITP++K K + +F+++P++E WKEE
Sbjct: 648 KGLLINFLEVQFPSLLRIDDFFQEFITPVVKVWQGNNPKKPQNLKTFFNIPQYEAWKEE- 706
Query: 620 TNWHTYKIKYYKVVYVTGV 638
H +++ + Y+ G+
Sbjct: 707 ---HKSQLRKWNYKYLKGL 722
Score = 111 bits (278), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 81/123 (65%), Gaps = 11/123 (8%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPL--------P 711
IEP+ Y+P+IPMVLVNGA+GIGTGW T IPN++P EIV+N+KR + DP P
Sbjct: 930 IEPKVYVPVIPMVLVNGADGIGTGWSTSIPNYHPLEIVENLKRRMGRLDPADPEEKPFKP 989
Query: 712 MKPWYKNFKGEIDYCGDSRFVVNGEIAILDD--DKLEITELQVGKWTTDYKDTLDTLLHG 769
M PW++ +KG ++ G +RF NG I + +++ +TEL + WT D+K L+ ++
Sbjct: 990 MTPWFRGWKGVVEPDGPNRFKFNGIIKQDEQNPNEIHVTELPIRMWTDDFKSRLEDIIR- 1048
Query: 770 AEK 772
AEK
Sbjct: 1049 AEK 1051
Score = 45.8 bits (107), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 8/59 (13%)
Query: 850 KDYDYLLGMTFWSLTMER----KNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
+DYDYLL M WSLT ER KN++ K+ + ELN L +K DLW DLD E+
Sbjct: 1219 RDYDYLLSMPIWSLTNERLEKLKNQIAAKKAE-YDELNALSEK---DLWVRDLDDFVEE 1273
>gi|40804952|gb|AAR91744.1| topoisomerase II [Trichomonas vaginalis]
Length = 1458
Score = 519 bits (1336), Expect = e-143, Method: Compositional matrix adjust.
Identities = 287/648 (44%), Positives = 376/648 (58%), Gaps = 114/648 (17%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K + EH+L RPD+YIGS+EP MW+ N E E REI+YVPGLYKIFDEILVNA
Sbjct: 17 YVKLTHREHVLTRPDSYIGSIEPRECKMWVCN-EDGKFEFREISYVPGLYKIFDEILVNA 75
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNKQRDP + IK V+ N ISVWN+GKGI +K F P
Sbjct: 76 ADNKQRDPPLTTIKGEVDPAQNRISVWNDGKGIST-----QKQFSPN------------- 117
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D +P IF LLTSSNYND+++KVTGGRNGYGAKL NIFS KF + ++
Sbjct: 118 ---DNCEYYIPEFIFSQLLTSSNYNDKQEKVTGGRNGYGAKLANIFSKKFHINIYNADEG 174
Query: 216 KSFKQVWKDNMSKVTSPEIKSG-SKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
+++Q DNM+ + P++K+G K +T+I+F PDL +F + ++ KD VDLI RR YD
Sbjct: 175 INYQQTITDNMTNIQPPKLKNGKGKGSYTEISFWPDLERFNLQTITKDHVDLIRRRVYDL 234
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPR---WEVAIAPS 331
A VK+F NG ++P+K ++DY K+Y ED P ++ E N + W++ +APS
Sbjct: 235 ADILPKVKIFWNGNQVPIKKWEDYCKVYL---KEDVKP--LVCEVKNEKGYTWKIGVAPS 289
Query: 332 -DRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNV 390
R FQQ+SFVN +AT+ GG HVD VV+ I K I + +K +
Sbjct: 290 KSREFQQISFVNCVATSNGGTHVDVVVNQITKYITDYLKNR------------------- 330
Query: 391 KNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSF 450
R G + KP VKN +++F++ L++NP+FDSQTKE +TL +
Sbjct: 331 ----------------RSGKVETKPSVVKNFLYVFVDSLVINPSFDSQTKERLTLDQKKL 374
Query: 451 GSTC-------------------------------------------VPKLEDANDAGTK 467
C + KLEDAN AG
Sbjct: 375 KDDCKLPDNFLDKILKTDIVALVTEYANFKEQRKVANMKGTKKGRLIINKLEDANMAGKA 434
Query: 468 NSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNL 527
S+ CTLILTEGDSAK+ AV+GL +GRD YGVFPLRGKLLN R+ + K++ EN EI N+
Sbjct: 435 ESLKCTLILTEGDSAKATAVTGLATIGRDYYGVFPLRGKLLNTRDISAKKLSENDEIQNI 494
Query: 528 VKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL-RLPF 586
+KI+GL +KY + MK LRYG +MIM DQD DGSHIKGLIINF+H WP LL + F
Sbjct: 495 IKIMGLDPMEKYENDDSMKRLRYGSIMIMADQDVDGSHIKGLIINFVHSMWPNLLKKRNF 554
Query: 587 LEEFITPIIKATKAREE---LSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+ EFITPI+K TK + +SF+++PEF +WK N YK+KYYK
Sbjct: 555 ITEFITPIVKVTKGNNKKGAISFFTIPEFSQWKAANNNGKGYKMKYYK 602
Score = 102 bits (255), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 71/119 (59%), Gaps = 9/119 (7%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP YIPIIPMVLVNGA+GIG GW +++P + P++I+DN++R + E + M PWY F
Sbjct: 813 IEPVTYIPIIPMVLVNGAKGIGVGWSSEVPQYCPQDIIDNLRRKMNDEPMVEMTPWYSGF 872
Query: 720 KGE---IDYCGDS------RFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHG 769
G+ I D ++ G + +DD +EITE G WT DYK L+ L G
Sbjct: 873 TGKIIPIQVIKDGVKQPIVKWESRGIVKKIDDTTIEITEFTNGIWTYDYKKFLEGLTVG 931
Score = 45.8 bits (107), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 849 DKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
+K YDYLL M W+LT E+ ++L + K EL + KK P D + +DLD
Sbjct: 1153 EKGYDYLLAMKIWTLTKEKADKLDDEAKKKNQELEEMLKKKPIDFYKEDLDKF 1205
>gi|320593621|gb|EFX06030.1| DNA topoisomerase 2 [Grosmannia clavigera kw1407]
Length = 1724
Score = 519 bits (1336), Expect = e-143, Method: Compositional matrix adjust.
Identities = 285/689 (41%), Positives = 384/689 (55%), Gaps = 132/689 (19%)
Query: 13 QQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNH 72
Q +G P + + + ++YQK +QLEHI+ RPDTYIGSVE + MW+ N+ T
Sbjct: 128 QLDGVDDEPASQAAGSSKTASEMYQKLTQLEHIIKRPDTYIGSVEHAEQLMWVYNKATGQ 187
Query: 73 MERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVE 132
ME+R I++VPGLYKIFDEILVNA DNKQRDP M+ +K+TV++ ISV NNGKGI +
Sbjct: 188 MEKRAISFVPGLYKIFDEILVNAADNKQRDPSMSMLKVTVDRAAGEISVENNGKGIAIEM 247
Query: 133 HKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNG 192
H+ EK+++P ++FGHLLT SN Y+D E + GGRNG
Sbjct: 248 HQKEKVYIPELLFGHLLTGSN-------------------------YDDNEKRTVGGRNG 282
Query: 193 YGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLT 252
YGAKLCN+FS++F VE S K +KQ W +NMS + I + DF ++TF PD
Sbjct: 283 YGAKLCNVFSTEFTVECQDSASGKRYKQTWHNNMSVMDKARITANKSSDFVRVTFKPDFE 342
Query: 253 KFKM-TSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGD 311
+F M +D D+ L+ RR YD A VKVFLNGE L V F+ Y +Y ++ D
Sbjct: 343 RFGMPNGIDDDLEALMYRRIYDMAGVVDGVKVFLNGEYLKV-GFKKYCDMYAKAIAKERD 401
Query: 312 ----------PVKIIYEN--VNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDA 359
+ +E+ + RW++ SD FQQVSFVNSIATT GG HV+ + D
Sbjct: 402 EEVTGEELPPAATVQFEDPKAHKRWQIGFTVSDGTFQQVSFVNSIATTSGGTHVNYIADQ 461
Query: 360 IVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVK 419
I C + L D+ R G +LK ++
Sbjct: 462 I----------------CNAL--------------------LADLNKRKKGHSLKLNHIR 485
Query: 420 NHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTCV------------------------ 455
NHI+IF+NC I NP F QTKE MT + +FG+ CV
Sbjct: 486 NHIFIFVNCFIDNPAFTGQTKEQMTTKVSAFGTKCVLTDAFIKKIRSTDAINNIIHFAEK 545
Query: 456 -------------------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRD 496
KL DAN AGTK+ +CTLILTEGDSA+ LA++G V+ D
Sbjct: 546 KADKMMSKSDGNRRSRISNDKLVDANLAGTKHGHECTLILTEGDSARGLAIAGRAVLDPD 605
Query: 497 KYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIM 556
+ GVFPLRGKLLNVR+A+ QI +N EI N+ + LGL++ + YT D K+LRYG LMIM
Sbjct: 606 RIGVFPLRGKLLNVRDASIDQITKNKEIQNIKQFLGLKHKQVYT---DTKSLRYGHLMIM 662
Query: 557 TDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKA------TKAREELSFYSL 609
DQD DGSHIKGL+INF+ +P+LL +P F +EFITP++K K + +FY++
Sbjct: 663 ADQDHDGSHIKGLLINFLQVQFPSLLLIPEFFQEFITPVVKVWQGPNPKKPTKSKAFYTI 722
Query: 610 PEFEEWKEETTNWHTYKIKYYKVVYVTGV 638
PE+EEWK+ H ++K ++ Y+ G+
Sbjct: 723 PEYEEWKDA----HHSEVKRWEHKYLKGL 747
Score = 92.8 bits (229), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 78/127 (61%), Gaps = 18/127 (14%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMI-----RGEDPLP--- 711
IEP+ Y PI+PMVL+NGA+GIGTGW T IPN+NP ++V+N+KR + + LP
Sbjct: 955 IEPKNYAPIVPMVLINGADGIGTGWSTSIPNYNPVDVVNNLKRRMGRLAGHENEELPFES 1014
Query: 712 MKPWYKNFKG--EIDYCGDSRFVVNGEIAILDDDK----LEITELQVGKWTTDYKDTLDT 765
M PW++ +KG E D R+ NG I DD+ + ++EL V WT D+K L+
Sbjct: 1015 MIPWFRGWKGTPEPDSV-PGRYRFNG--IIYQDDRNPNEIVVSELPVRMWTDDFKAKLEE 1071
Query: 766 LLHGAEK 772
++ AEK
Sbjct: 1072 VIR-AEK 1077
Score = 49.7 bits (117), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
+DYDYLL M WS T ER + L K+ D K + + L K+ DLW DLD
Sbjct: 1243 RDYDYLLSMPIWSFTQERLDRLKKQIDAKKAQYDELDVKSEKDLWCFDLD 1292
>gi|300176630|emb|CBK24295.2| unnamed protein product [Blastocystis hominis]
Length = 1173
Score = 519 bits (1336), Expect = e-143, Method: Compositional matrix adjust.
Identities = 285/680 (41%), Positives = 399/680 (58%), Gaps = 139/680 (20%)
Query: 24 KTPANKMS--VEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYV 81
KTP + S + +YQK SQ +HIL RPDTYIGSV+ IT+ MWL + + M+ R + Y
Sbjct: 7 KTPITEESEKIGDVYQKLSQRDHILKRPDTYIGSVQNITQKMWLFDETSKSMQYRSVNYN 66
Query: 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVP 141
PGL KIFDEILVNA DNKQR P+M IK++V+++TNTIS++N+G GIPV H + +++P
Sbjct: 67 PGLIKIFDEILVNAVDNKQRCPEMTTIKVSVDKKTNTISIYNDGDGIPVAIHPEYNVYIP 126
Query: 142 TMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIF 201
+MIFG LL+ +N ++D KVTGGRNG+GAKL NI+
Sbjct: 127 SMIFGQLLSGTN-------------------------FDDNSKKVTGGRNGFGAKLTNIY 161
Query: 202 SSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLD 260
S++F VET +E K F QV+++NM++ P++ ++ +T+I F PDL +F M LD
Sbjct: 162 STEFRVETVSNE--KRFIQVFRNNMTEEEKPKVTKATRSKQYTEIVFKPDLARFGMKELD 219
Query: 261 KDMVDLITRRAYDAAASTKD-VKVFLNGEKLPVKNFQDYVKLY------TDRQDEDGDPV 313
D + ++ RR YD A T D VKV+ NGEKL V++F DYVKL+ TD +++ D +
Sbjct: 220 DDTIAIMKRRVYDVAGVTDDSVKVYWNGEKLNVRSFNDYVKLFERTLQNTDFVEQNNDAL 279
Query: 314 KII----YENVNPRWEVAIAPS-----------DRGFQ---QVSFVNSIATTKGGRHVDA 355
+ I +PRW+ A+ P+ F ++SFVN + T +GG+H+
Sbjct: 280 QHIDIQMAYGASPRWQFAVIPTPITGITPFSVGSYFFSLNGKMSFVNGVFTNRGGKHLTY 339
Query: 356 VVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKP 415
+ D IV Q+ ++++ K ++KP
Sbjct: 340 LTDHIVAQLQPAIERRLK-------------------------------------RSVKP 362
Query: 416 FQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS----------------------- 452
++ H+ +F NCLI NPTFDSQTKE +T FGS
Sbjct: 363 SLIRQHLCVFCNCLIENPTFDSQTKECLTTNSKDFGSLPELSPSFLSKIERSGIVDLVST 422
Query: 453 ---------------------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLG 491
+PKL+DAN+AGTK S TLI+TEGDSAK+LAV GLG
Sbjct: 423 SMHLKDIQTLKKSSGTKVNRLLNIPKLDDANNAGTKKSGQATLIITEGDSAKALAVGGLG 482
Query: 492 VVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYG 551
VVGRD YGVFPL+GK++NVR+AT KQ EN EI NLV+ILGL+Y K+Y +D +LRYG
Sbjct: 483 VVGRDNYGVFPLKGKVMNVRDATEKQCSENEEIQNLVRILGLKYGKEY---KDTSSLRYG 539
Query: 552 RLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPE 611
L+IMTDQD DGSHIKGL++N WP+LL+L F+ +FITPI+K T+ +EE +F+++ E
Sbjct: 540 HLLIMTDQDYDGSHIKGLVLNLFETFWPSLLKLDFVSQFITPIVKVTRKKEEHTFFTVKE 599
Query: 612 FEEWKEETTNWHTYKIKYYK 631
F++W + + ++KIKYYK
Sbjct: 600 FQDWSNKEKDLKSWKIKYYK 619
Score = 110 bits (274), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 72/109 (66%), Gaps = 2/109 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRG-EDPLPMKPWYKN 718
IEP +Y+PI+P VLVNGA GIGTGW T + NHNP E+ D + +RG P+ PWY+
Sbjct: 829 IEPSYYLPILPTVLVNGAVGIGTGWSTNVCNHNPIEVADALIAQLRGTRSNRPLYPWYRG 888
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
F G+I ++ + V G ++ +D++ L ITEL VG+WT DYK L L+
Sbjct: 889 FVGQI-LKKENGYQVCGNVSWIDENTLAITELPVGRWTQDYKQFLCDLV 936
>gi|86438844|emb|CAJ44361.1| putative DNA topoisomerase II [Malus x domestica]
Length = 1467
Score = 518 bits (1335), Expect = e-143, Method: Compositional matrix adjust.
Identities = 301/667 (45%), Positives = 381/667 (57%), Gaps = 156/667 (23%)
Query: 15 NGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHME 74
N + P+P K ++E++YQKKSQLEHILLRPDTYIGS+E T +W+ + M
Sbjct: 16 NIDHPAPTDGGGKGK-TIEEMYQKKSQLEHILLRPDTYIGSIEKHTSNLWVY--QNGEMV 72
Query: 75 RREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHK 134
R ITYVPGLYKIFDEILVNA DNKQRDP M+ +K+T++ E N+ISV+NNG G+PV H+
Sbjct: 73 NRSITYVPGLYKIFDEILVNAADNKQRDPSMDSVKVTIDVEQNSISVYNNGAGVPVEIHQ 132
Query: 135 DEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYG 194
+E+++VP +IFGHLLTSSN Y+D K TGGRNGYG
Sbjct: 133 EERVYVPELIFGHLLTSSN-------------------------YDDTVKKTTGGRNGYG 167
Query: 195 AKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTK 253
AKL NIFS++F++ET+ +K +KQV+ +NM T P I K +++T++T+ PDL+K
Sbjct: 168 AKLTNIFSTEFIIETADGMRQKKYKQVFTNNMGNKTVPVITKCKESENWTRVTYKPDLSK 227
Query: 254 FKMTSLDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGD- 311
F MT L+ D+V L+ +R D A K VKV LNG ++PVK+F DYV LY + D
Sbjct: 228 FNMTHLEDDVVALMQKRVIDLAGCLGKTVKVELNGTRVPVKSFLDYVDLYLQSAGKSRDA 287
Query: 312 PVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK 371
P+ + E VN RWE+ ++ SD FQQVSFVN IAT KGG HV+ V D I ++ +V KK
Sbjct: 288 PLLRLTEKVNDRWEICVSLSDGQFQQVSFVNGIATIKGGTHVNYVTDQITNHVMNIVNKK 347
Query: 372 NKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIV 431
NK+ LK VKN++W+F+N LI
Sbjct: 348 NKN------------------------------------ANLKAHNVKNYLWVFVNALID 371
Query: 432 NPTFDSQTKENMTLQKGSFGSTC------------------------------------- 454
NP FDSQTKE +T++ SFGS C
Sbjct: 372 NPAFDSQTKETLTIRPNSFGSKCELTPAFLNKVAKSGIVDSLLSWANFKQNKDLKKTDGT 431
Query: 455 -------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKL 507
+ KLEDAN AG KNS CTLILTEGDSAK+LA++GL VVGRD YGVFPLRGKL
Sbjct: 432 KTERVHNINKLEDANYAGGKNSEKCTLILTEGDSAKALAMAGLAVVGRDHYGVFPLRGKL 491
Query: 508 LNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIK 567
LNVREA+ QD DGSHIK
Sbjct: 492 LNVREAS------------------------------------------ATQDHDGSHIK 509
Query: 568 GLIINFIHHNWPTLLRLP-FLEEFITPIIKAT-KAREELSFYSLPEFEEWKEETT-NWHT 624
GL+INFIH WP+LL++P FL EFITPI+KAT K L+FYS+PE+E WKE N
Sbjct: 510 GLLINFIHSFWPSLLKIPSFLVEFITPIVKATHKNGNTLAFYSMPEYEAWKESLRGNASG 569
Query: 625 YKIKYYK 631
+ IKYYK
Sbjct: 570 WSIKYYK 576
Score = 125 bits (313), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY+PIIP VLVNG+EGIGTGW + IPN+NPR+IV N++R++ G+ +PM PWY+ F
Sbjct: 786 IEPTWYVPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLDGDAMVPMDPWYRGF 845
Query: 720 KGEIDYC---GDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G I+ + G I + + L I+EL + +WT DYK+ L+++ G +K
Sbjct: 846 TGTIEKTVKESGVSYTACGIIEEVSETSLRISELPIRRWTQDYKEFLESISEGNDK 901
Score = 52.8 bits (125), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 816 PQKTGPQLERQERQAAEG-EDDEAGSQTQEEEDPD-KDYDYLLGMTFWSLTMERKNELLK 873
P+KT LE + A E ED E S+ E+ DY+YL+ M +LT+ER LL
Sbjct: 1039 PKKT-KALEPEVAGATENTEDAEENSEAAIEKGARISDYEYLISMAIGTLTIERVQALLA 1097
Query: 874 KRDDKMTELNILKKKAPTDLWSDDLDAL 901
RD E++ L+K P LW DLDAL
Sbjct: 1098 DRDKANAEVDELRKSTPRSLWLKDLDAL 1125
>gi|83367164|gb|ABC17641.1| DNA topoisomerase IIalpha [Trypanosoma brucei]
Length = 1455
Score = 518 bits (1333), Expect = e-143, Method: Compositional matrix adjust.
Identities = 286/663 (43%), Positives = 380/663 (57%), Gaps = 123/663 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+VE+IYQKK+Q EHIL RPD YIG++EP+TE +W+ + N M+ R+ T+ PGLYKIFDE
Sbjct: 5 TVEEIYQKKTQHEHILARPDMYIGTIEPVTEDVWVYDEADNVMKLRKCTWTPGLYKIFDE 64
Query: 91 ILVNACDNKQRDPK-MNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
ILVNA DNK RDP IK+ V+ + V+NNG+GIPV H++ ++VP MIF
Sbjct: 65 ILVNAADNKVRDPHGQTTIKVWVDAARGLVRVYNNGEGIPVQRHREHDLWVPEMIF---- 120
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
GHLLTSSNY+D E KVTGGRNG+GAKL N+FS++F VET
Sbjct: 121 ---------------------GHLLTSSNYDDTEAKVTGGRNGFGAKLTNVFSTRFEVET 159
Query: 210 SCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
S +K F W++NM + I D+T +TF PD KF + +DMV ++ R
Sbjct: 160 VHSRSRKKFFMRWRNNMLENEEAVITPCDGPDYTVVTFYPDFEKFNLEGFTEDMVLIMQR 219
Query: 270 RAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAI 328
R YD A T K + +LN ++ ++F +YV LY E+ P Y VN RWEV +
Sbjct: 220 RVYDIAGCTDKSLCCYLNDTRIACRSFPEYVDLYPT-MGEERKPSS--YSRVNDRWEVCV 276
Query: 329 APSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
S+ GFQQVSFVNSIATT+GG HV +VD I+ ++ + +K+K
Sbjct: 277 RVSNVGFQQVSFVNSIATTRGGTHVKYIVDQIIAKVTDQAMRKSK--------------- 321
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
+KP ++ H++IF+N LI NP+FDSQTKE + K
Sbjct: 322 ----------------------TEVKPHMIRPHLFIFVNSLIENPSFDSQTKETLNTPKA 359
Query: 449 SFGSTC---------------------------------------------VPKLEDAND 463
FGSTC +PKL+DAN+
Sbjct: 360 RFGSTCDLPASLIDCVLKSSIVERAVEMANSRLNREMAMKMRNTNRKQILGIPKLDDANE 419
Query: 464 AGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAE 523
AG K S CTLILTEGDSAK+L +GL V RD +GVFPLRGK LNVR+A+ K+++ AE
Sbjct: 420 AGGKYSQRCTLILTEGDSAKALCTAGLAVENRDYFGVFPLRGKPLNVRDASVKKVMGCAE 479
Query: 524 INNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR 583
+ KI+GL S+KYT+ E LRYG LMIM+DQD DGSHIKGLIIN IH+ WP LL+
Sbjct: 480 FQAVSKIMGLDLSQKYTSTEG---LRYGHLMIMSDQDHDGSHIKGLIINMIHNYWPDLLK 536
Query: 584 LP-FLEEFITPIIKATKARE------ELSFYSLPEFEEWKEETT-NWHTYKIKYYKVVYV 635
+P FL++FITPI+KA K +SF+S+P++ EWK Y+++YYK +
Sbjct: 537 VPGFLQQFITPIVKARKKGRGNSDEGTISFFSMPDYFEWKNAVGEGIKNYELRYYKGLGT 596
Query: 636 TGV 638
+G
Sbjct: 597 SGA 599
Score = 118 bits (295), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 72/107 (67%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP +Y+P+IPMVLVNG GIGTG+ T IPN++P +++DN+ R++ GE+ PMKPWY F
Sbjct: 806 VEPFYYVPVIPMVLVNGTAGIGTGFATNIPNYSPLDVIDNLNRLLSGEELQPMKPWYFGF 865
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
G I+ +FV +G + D + ITEL +G WT YK L+ L
Sbjct: 866 TGTIEEREKGKFVSSGCATVRPDGVVHITELPIGTWTQQYKKFLEDL 912
Score = 53.9 bits (128), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 46/102 (45%), Gaps = 20/102 (19%)
Query: 801 EEEIEEVFHDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTF 860
EE I V +EL P G Q E + +Q A +DYDYLLG+
Sbjct: 1083 EEAI--VLQPDELIGPGGGGAQEEPEVKQNA------------------RDYDYLLGLRL 1122
Query: 861 WSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALR 902
W+LT E L + D + + K+ P DLW +DLD LR
Sbjct: 1123 WNLTAEMSARLKAQLDAAREKYENIAKRTPKDLWREDLDLLR 1164
>gi|261335183|emb|CBH18177.1| DNA topoisomerase II, putative [Trypanosoma brucei gambiense
DAL972]
Length = 1455
Score = 518 bits (1333), Expect = e-143, Method: Compositional matrix adjust.
Identities = 286/663 (43%), Positives = 380/663 (57%), Gaps = 123/663 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+VE+IYQKK+Q EHIL RPD YIG++EP+TE +W+ + N M+ R+ T+ PGLYKIFDE
Sbjct: 5 TVEEIYQKKTQHEHILARPDMYIGTIEPVTEDVWVYDEADNVMKLRKCTWTPGLYKIFDE 64
Query: 91 ILVNACDNKQRDPK-MNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
ILVNA DNK RDP IK+ V+ + V+NNG+GIPV H++ ++VP MIF
Sbjct: 65 ILVNAADNKVRDPHGQTTIKVWVDAARGLVRVYNNGEGIPVQRHREHDLWVPEMIF---- 120
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
GHLLTSSNY+D E KVTGGRNG+GAKL N+FS++F VET
Sbjct: 121 ---------------------GHLLTSSNYDDTEAKVTGGRNGFGAKLTNVFSTRFEVET 159
Query: 210 SCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
S +K F W++NM + I D+T +TF PD KF + +DMV ++ R
Sbjct: 160 VHSRSRKKFFMRWRNNMLENEEAVITPCDGPDYTVVTFYPDFEKFNLEGFTEDMVLIMQR 219
Query: 270 RAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAI 328
R YD A T K + +LN ++ ++F +YV LY E+ P Y VN RWEV +
Sbjct: 220 RVYDIAGCTDKSLCCYLNDTRIACRSFPEYVDLYPT-MGEERKPSS--YSRVNDRWEVCV 276
Query: 329 APSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
S+ GFQQVSFVNSIATT+GG HV +VD I+ ++ + +K+K
Sbjct: 277 RVSNVGFQQVSFVNSIATTRGGTHVKYIVDQIIAKVTDQAMRKSK--------------- 321
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
+KP ++ H++IF+N LI NP+FDSQTKE + K
Sbjct: 322 ----------------------TEVKPHMIRPHLFIFVNSLIENPSFDSQTKETLNTPKA 359
Query: 449 SFGSTC---------------------------------------------VPKLEDAND 463
FGSTC +PKL+DAN+
Sbjct: 360 RFGSTCDLPASLIDCVLKSSIVERAVEMANSRLNREMAMKMRNTNRKQILGIPKLDDANE 419
Query: 464 AGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAE 523
AG K S CTLILTEGDSAK+L +GL V RD +GVFPLRGK LNVR+A+ K+++ AE
Sbjct: 420 AGGKYSQRCTLILTEGDSAKALCTAGLAVENRDYFGVFPLRGKPLNVRDASVKKVMGCAE 479
Query: 524 INNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR 583
+ KI+GL S+KYT+ E LRYG LMIM+DQD DGSHIKGLIIN IH+ WP LL+
Sbjct: 480 FQAVSKIMGLDLSQKYTSTEG---LRYGHLMIMSDQDHDGSHIKGLIINMIHNYWPDLLK 536
Query: 584 LP-FLEEFITPIIKATKARE------ELSFYSLPEFEEWKEETT-NWHTYKIKYYKVVYV 635
+P FL++FITPI+KA K +SF+S+P++ EWK Y+++YYK +
Sbjct: 537 VPGFLQQFITPIVKARKKGRGNSDEGTISFFSMPDYFEWKNAVGEGIKNYELRYYKGLGT 596
Query: 636 TGV 638
+G
Sbjct: 597 SGA 599
Score = 118 bits (295), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 72/107 (67%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP +Y+P+IPMVLVNG GIGTG+ T IPN++P +++DN+ R++ GE+ PMKPWY F
Sbjct: 806 VEPFYYVPVIPMVLVNGTAGIGTGFATNIPNYSPLDVIDNLNRLLSGEELQPMKPWYFGF 865
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
G I+ +FV +G + D + ITEL +G WT YK L+ L
Sbjct: 866 TGTIEEREKGKFVSSGCATVRPDGVVHITELPIGTWTQQYKKFLEDL 912
Score = 53.9 bits (128), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 46/102 (45%), Gaps = 20/102 (19%)
Query: 801 EEEIEEVFHDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTF 860
EE I V +EL P G Q E + +Q A +DYDYLLG+
Sbjct: 1083 EEAI--VLQPDELIGPGGGGAQEEPEVKQNA------------------RDYDYLLGLRL 1122
Query: 861 WSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALR 902
W+LT E L + D + + K+ P DLW +DLD LR
Sbjct: 1123 WNLTAEMSARLKAQLDAAREKYENIAKRTPKDLWREDLDLLR 1164
>gi|401425172|ref|XP_003877071.1| DNA topoisomerase ii [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322493315|emb|CBZ28601.1| DNA topoisomerase ii [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 1497
Score = 517 bits (1332), Expect = e-143, Method: Compositional matrix adjust.
Identities = 290/660 (43%), Positives = 382/660 (57%), Gaps = 122/660 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+VE+IYQKK+Q +HIL RPD YIG++EP+T+ +W+ + N M++ + T+ PGLYKIFDE
Sbjct: 4 TVEQIYQKKTQHDHILTRPDMYIGTIEPVTDDIWVYDDAENIMKQHKCTWTPGLYKIFDE 63
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNK RDP + I V N + V+NNG+GIP+ +H++ ++VP MIF
Sbjct: 64 ILVNAADNKVRDPIGQTV-IRVWMTENYVRVYNNGEGIPIQKHREHDLWVPEMIF----- 117
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
GHLLTSSNY+DEE KVTGGRNG+GAKL N+FS +F VET
Sbjct: 118 --------------------GHLLTSSNYDDEEAKVTGGRNGFGAKLTNVFSKQFEVETV 157
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
S +K F W +NM + P I S D+T +TF PD +F + +DM+ ++ RR
Sbjct: 158 HSRSRKKFYMKWTNNMLQHDDPIIVSCDSADYTMVTFYPDFARFHVDKFSEDMLLMMKRR 217
Query: 271 AYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIA 329
YD A T K +K FLN E++ F +YV LY +E Y VN RWEV +
Sbjct: 218 VYDVAGCTDKTLKCFLNDERIACTTFPEYVDLYPTMGEERK---AASYSRVNDRWEVCVR 274
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
S+ G QQVSFVNSIATT+GG HV ++D I+ +++E KKK K
Sbjct: 275 VSNIGPQQVSFVNSIATTRGGTHVKYIMDQIISKVVEQAKKKKK---------------- 318
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
+KP ++ HI++F+NCLI NP FDSQTKE + K
Sbjct: 319 ---------------------TDVKPHMIRPHIFLFVNCLIENPGFDSQTKETLNTVKSK 357
Query: 450 FGSTC---------------------------------------------VPKLEDANDA 464
FGSTC +PKL+DAN+A
Sbjct: 358 FGSTCDLPNSIIDYIMSSGIVERSVEMANSKIAKEMASKMRSSDRKQIMGIPKLDDANEA 417
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
G K S CTLILTEGDSAK+L +GL V RD +GVFPLRGK LNVREA+ K++ EI
Sbjct: 418 GGKYSHRCTLILTEGDSAKTLCTAGLAVKDRDYFGVFPLRGKPLNVREASLKKLAACEEI 477
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
++KI+GL +KY E+ LRYG LMIM+DQD DGSHIKGL+INFIH WP+LLR+
Sbjct: 478 QCVMKIMGLDIRQKY---ENTDGLRYGHLMIMSDQDHDGSHIKGLLINFIHCFWPSLLRV 534
Query: 585 P-FLEEFITPIIKAT-----KAREELSFYSLPEFEEWKEET-TNWHTYKIKYYKVVYVTG 637
P FL+EFITPI+KA A + +SF+S+P++ EWK+ N Y+I+YYK + +G
Sbjct: 535 PGFLQEFITPIVKARPKGRGGAGKAISFFSMPDYFEWKKAIGDNLSNYQIRYYKGLGTSG 594
Score = 112 bits (279), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 72/107 (67%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP +YIP+IPMVLVNG GIGTG+ T IPN+NP EI+ N++R+++GE+ M+PWY F
Sbjct: 802 VEPFFYIPVIPMVLVNGTTGIGTGFSTSIPNYNPLEIISNLERLMQGEEVHKMQPWYFGF 861
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
G ++ +FV +G I D + ITEL +G WT YK L+ +
Sbjct: 862 TGTMEEKEPGKFVSHGRYEIRPDGVVCITELPIGVWTQTYKKFLEDM 908
Score = 55.1 bits (131), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 829 QAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMER----KNELLKKRDDKMTELNI 884
+AA+GE D+ ++ E +DYDYLLGM WSLT E + ++ K R D T
Sbjct: 1082 RAADGEADDGAAEPPEVRRATRDYDYLLGMKLWSLTAEMIARLEAQMAKARRDTAT---- 1137
Query: 885 LKKKAPTDLWSDDLDALREK 904
++ + P + W +DL LR +
Sbjct: 1138 MEARTPKETWMEDLKVLRTR 1157
>gi|449516699|ref|XP_004165384.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-like [Cucumis
sativus]
Length = 1460
Score = 517 bits (1331), Expect = e-143, Method: Compositional matrix adjust.
Identities = 300/669 (44%), Positives = 376/669 (56%), Gaps = 156/669 (23%)
Query: 14 QNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHM 73
QN N + K ++E++YQKKSQLEHILLRPDTY+GS+E T+ +W+ E M
Sbjct: 10 QNSNAANVDSNPAGPKKTIEEMYQKKSQLEHILLRPDTYVGSIEKHTQNLWVY--ENEKM 67
Query: 74 ERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEH 133
R I+YVPGLYKIFDEILVNA DNKQRDP M+ +K+ ++ E N ISV+NNG G+PV H
Sbjct: 68 VHRSISYVPGLYKIFDEILVNAADNKQRDPSMDSVKVNIDVEQNCISVFNNGDGVPVEIH 127
Query: 134 KDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGY 193
++EK++VP +IF GHLLTSSNY+D E K TGGRNGY
Sbjct: 128 QEEKVYVPELIF-------------------------GHLLTSSNYDDTEKKTTGGRNGY 162
Query: 194 GAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLT 252
GAKL NIFSS+FV+ET+ K +KQV+ DNM K + P I K + D++T++TF PDL
Sbjct: 163 GAKLTNIFSSEFVIETADGRRLKKYKQVFNDNMGKKSEPIITKCKAGDNWTRVTFKPDLX 222
Query: 253 KFKMTSLDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDE-DG 310
KF MT L+ D+V L+ +R D A K VKV LNG+++PV++FQDYV LY
Sbjct: 223 KFNMTHLEDDVVALMKKRVLDLAGCLGKTVKVELNGQRVPVRSFQDYVDLYLKSASSIQA 282
Query: 311 DPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKK 370
+P K + N RWE+ + S+ FQQVSFVN IAT KGG HV+ + + I ++
Sbjct: 283 EPPKRYHIRPNERWEIVVTLSEGQFQQVSFVNGIATIKGGTHVEYITNQIANFVM----- 337
Query: 371 KNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLI 430
T + N +N VK+++W+FIN LI
Sbjct: 338 -------TAVNKKNKNANVKAHN------------------------VKSYLWVFINALI 366
Query: 431 VNPTFDSQTKENMTLQKGSFGSTC------------------------------------ 454
NP+FDSQTKE +T + SFGS C
Sbjct: 367 DNPSFDSQTKETLTKRANSFGSACELTPDFLKNVATKSGIMDSVLSWVNFKQSKDLKKTD 426
Query: 455 ---------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRG 505
+ KLEDAN AG KNS CTLILTEGDSAK+LA++GLGVVGRD YGVFPLRG
Sbjct: 427 GAKTEKISGIEKLEDANCAGGKNSEKCTLILTEGDSAKALAMAGLGVVGRDFYGVFPLRG 486
Query: 506 KLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSH 565
KLLNVREA+ K QD DGSH
Sbjct: 487 KLLNVREASSK------------------------------------------QDHDGSH 504
Query: 566 IKGLIINFIHHNWPTLLRLP-FLEEFITPIIKAT-KAREELSFYSLPEFEEWKEETT-NW 622
IKGL+INFIH WP+LLR+P FL EFITPI+KAT K LSFY++PE+E WKE N
Sbjct: 505 IKGLLINFIHSFWPSLLRVPSFLVEFITPIVKATHKNGTVLSFYTMPEYEAWKESLRGNA 564
Query: 623 HTYKIKYYK 631
+ IKYYK
Sbjct: 565 SGWSIKYYK 573
Score = 138 bits (347), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 81/117 (69%), Gaps = 4/117 (3%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY+PIIP VLVNG+EGIGTGW + +PN+NPR+I+ N++RM+ GE LPM PWY+ F
Sbjct: 783 IEPTWYMPIIPTVLVNGSEGIGTGWSSYVPNYNPRDIIRNVRRMLEGETMLPMDPWYRGF 842
Query: 720 KGEIDYC----GDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G I+ G + + V+G I + D L I EL V +WT+DYKD LD++ A K
Sbjct: 843 SGTIEKTATKEGGTTYTVSGIIEEVSDTTLRIVELPVRRWTSDYKDFLDSVTRVASK 899
Score = 49.7 bits (117), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 18/108 (16%)
Query: 827 ERQAAEGEDDEAGSQTQEEEDPD-------KDYDYLLGMTFWSLTMERKNELLKKRDDKM 879
E A E DEA EE P+ DY+YLL + +LT+E+ EL RD
Sbjct: 1054 EIAGASNETDEA------EESPEVVKGERISDYEYLLALPIGTLTIEKVQELCSDRDKLK 1107
Query: 880 TELNILKKKAPTDLWSDDLDAL-REKDKIHPCPGGNRTRGLALKRQTR 926
E++ L+K P LW +DLD L +E D++ N + + L++Q R
Sbjct: 1108 GEVDDLRKATPKSLWLNDLDYLEKELDEMDR----NDAQTMELRKQQR 1151
>gi|83367166|gb|ABC17642.1| putative DNA topoisomerase IIbeta [Trypanosoma brucei]
gi|261335184|emb|CBH18178.1| DNA topoisomerase II, putative [Trypanosoma brucei gambiense
DAL972]
Length = 1465
Score = 517 bits (1331), Expect = e-143, Method: Compositional matrix adjust.
Identities = 288/674 (42%), Positives = 387/674 (57%), Gaps = 127/674 (18%)
Query: 13 QQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNH 72
++ G GP ++ + +VE+IYQKK+Q EHIL RPD YIG++EP+TE +W+ + N
Sbjct: 32 EEIGTGP----ESTMSGRTVEEIYQKKTQHEHILARPDMYIGTIEPVTEDVWVYDEADNV 87
Query: 73 MERREITYVPGLYKIFDEILVNACDNKQRDPK-MNCIKITVNQETNTISVWNNGKGIPVV 131
M+ R+ T+ PGLYKIFDEILVNA DNK RDP IK+ V+ + V+NNG+GIPV
Sbjct: 88 MKLRKCTWTPGLYKIFDEILVNAADNKVRDPHGQTTIKVWVDAARGLVRVYNNGEGIPVQ 147
Query: 132 EHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRN 191
H++ ++VP MIF GHLLTSSNY+D E KVTGGRN
Sbjct: 148 RHREHDLWVPEMIF-------------------------GHLLTSSNYDDTEAKVTGGRN 182
Query: 192 GYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDL 251
G+GAKL N+FS++F VET S +K F W++NM + I D+T +TF PD
Sbjct: 183 GFGAKLTNVFSTRFEVETVHSRSRKKFFMRWRNNMLENEEAVITPCDGPDYTVVTFYPDF 242
Query: 252 TKFKMTSLDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDG 310
KF + +DMV ++ RR YD A T K + +LN ++ ++F +YV LY E+
Sbjct: 243 EKFNLEGFTEDMVLIMQRRVYDIAGCTDKSLCCYLNDTRIACRSFPEYVDLYPT-MGEER 301
Query: 311 DPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKK 370
P Y VN RWEV + S+ GFQQVSFVNSIATT+GG HV +VD I+ ++ + +
Sbjct: 302 KPSS--YSRVNDRWEVCVRVSNVGFQQVSFVNSIATTRGGTHVKYIVDQIIAKVTDQAMR 359
Query: 371 KNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLI 430
K+K +KP ++ H++IF+N LI
Sbjct: 360 KSK-------------------------------------TEVKPHMIRPHLFIFVNSLI 382
Query: 431 VNPTFDSQTKENMTLQKGSFGSTC------------------------------------ 454
NP+FDSQTKE + K FGSTC
Sbjct: 383 ENPSFDSQTKETLNTPKARFGSTCDLPASLIDCVLKSSIVERAVEMANSRLNREMAMKMR 442
Query: 455 ---------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRG 505
+PKL+DAN+AG K S CTLILTEGDSAK+L +GLGV RD +GVFPL G
Sbjct: 443 NTNRKQILGIPKLDDANEAGGKYSQRCTLILTEGDSAKALCTAGLGVKNRDYFGVFPLAG 502
Query: 506 KLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSH 565
K LNVR+ + K+ EN+EI ++ KI+GL +++KYT+ E LRYG LMIM+DQD DGSH
Sbjct: 503 KPLNVRDVSLKKASENSEIISICKIMGLDFNQKYTSTE---GLRYGHLMIMSDQDHDGSH 559
Query: 566 IKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKARE------ELSFYSLPEFEEWKEE 618
IKGLIIN IH+ WP LL++P FL++FITPI+KA K +SF+S+P++ +WK
Sbjct: 560 IKGLIINMIHNYWPDLLKVPGFLQQFITPIVKARKKGRGNSDEGTISFFSMPDYFKWKNA 619
Query: 619 T-TNWHTYKIKYYK 631
Y++KYYK
Sbjct: 620 VGEGISDYEVKYYK 633
Score = 117 bits (294), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 72/107 (67%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP +Y+P+IPMVLVNG GIGTG+ T IPN++P +++DN+ R++ GE+ PMKPWY F
Sbjct: 847 VEPFYYVPVIPMVLVNGTAGIGTGFATNIPNYSPLDVIDNLNRLLSGEELQPMKPWYFGF 906
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
G I+ +FV +G + D + ITEL +G WT YK L+ L
Sbjct: 907 TGTIEEREKGKFVSSGCATVRPDGVVHITELPIGTWTQQYKKFLEDL 953
>gi|440796916|gb|ELR18016.1| DNA gyrase/topoisomerase IV, A subunit [Acanthamoeba castellanii
str. Neff]
Length = 1137
Score = 517 bits (1331), Expect = e-143, Method: Compositional matrix adjust.
Identities = 279/687 (40%), Positives = 391/687 (56%), Gaps = 147/687 (21%)
Query: 18 GPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMER-- 75
GP + A + ++E++YQ+K+ +EH+LLRPD+Y +W+++ ++ H +
Sbjct: 93 GPGEEPPAAAGEKALEEVYQRKTPVEHVLLRPDSY---------ELWVLSAQSGHPKAVL 143
Query: 76 REITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKD 135
RE YVP LYKIFDEILVNA DNKQRDP M IK+ ++ E +I + N+G+GIPV HK
Sbjct: 144 RECGYVPALYKIFDEILVNAADNKQRDPNMTTIKVWIDAEQGSIRILNDGQGIPVHVHKQ 203
Query: 136 EKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGA 195
E +++P ++FGHLLT SN ++D KVTGGRNGYGA
Sbjct: 204 EGLYLPELLFGHLLTGSN-------------------------FDDSVAKVTGGRNGYGA 238
Query: 196 KLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKD-----DFTKITFTPD 250
KL NIFS +F VET + F Q W+DNMS P + ++ D+T +TF PD
Sbjct: 239 KLANIFSKEFTVETVDCKRGFKFVQTWRDNMSTTDGPRVSPLTQQEQEAKDYTVVTFKPD 298
Query: 251 LTKFKMTSL-DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDED 309
L++F M +L D D++ ++ R YD A + +KV+LN LP +F+DY+ LY + +
Sbjct: 299 LSRFGMQTLKDDDILSVMNMRVYDVAGCNETLKVYLNERPLP-GSFKDYLSLYYGPEVVE 357
Query: 310 GDPVKIIYENVNPRWEVAIAPSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVV 368
+++ +N RW+V + SD G F +SFVNSI T +GG HV+ + D +VK +++ +
Sbjct: 358 E---AFVFDKINDRWQVGVGISDSGQFSSISFVNSINTRRGGTHVNYIADQVVKYVVDKI 414
Query: 369 KKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINC 428
K + DL ++P VKNH+ +F+N
Sbjct: 415 NKTDPDL------------------------------------KVQPAHVKNHLTVFVNA 438
Query: 429 LIVNPTFDSQTKENMTLQKGSFGSTC---------------------------------- 454
L+ NP+FDSQTKE +T + +FGS C
Sbjct: 439 LVENPSFDSQTKETLTTRPRNFGSDCQLSTQLLDNILERTRIVDTVSRWMYMKQSSDLAR 498
Query: 455 -------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVF 501
+PKL+DAN AG+ NS DCTLILTEGDSAKSLAV+GL ++GRD YGV+
Sbjct: 499 KAASGRSGTRIYGIPKLDDANLAGSANSKDCTLILTEGDSAKSLAVAGLSILGRDHYGVY 558
Query: 502 PLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKT----------LRYG 551
PL+GKLLNVR+ATH+Q+LEN EIN + ILGL + + Y+ E LRYG
Sbjct: 559 PLKGKLLNVRDATHRQLLENKEINEITTILGLNHERTYSDAEATDAEQSGEVASDGLRYG 618
Query: 552 RLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATK-----AREELSF 606
++M+MTDQD DGSHIKGL INF+H WP+LL ++EEFITPI+KATK +EE F
Sbjct: 619 KVMLMTDQDHDGSHIKGLFINFLHRFWPSLLEKGYVEEFITPIVKATKKGAGNKKEEKVF 678
Query: 607 YSLPEFEEWKEET--TNWHTYKIKYYK 631
+++PE++ WKEE ++IKYYK
Sbjct: 679 FAIPEYQRWKEELDPAEKSKWRIKYYK 705
Score = 88.2 bits (217), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 73/121 (60%), Gaps = 13/121 (10%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGI------------GTGWMTKIPNHNPREIVDNIKRMIRG 706
+++P++++P++P +L+NG EG+ GTGW T+IP++NP +I++N++R I G
Sbjct: 933 QVQPQYFVPVLPTILLNGCEGLAEIMCRRSRVYQGTGWSTQIPSYNPLQIIENLRRKIEG 992
Query: 707 EDPLPMKPWYKNFKGEI-DYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDT 765
++ + PWY+ +G I G +V G + ++ + I++L +WT YK+ LD
Sbjct: 993 KEMEKIAPWYRGLQGPILRKKGSPSYVSIGLVEKINPTTIRISDLPAKRWTATYKEFLDQ 1052
Query: 766 L 766
+
Sbjct: 1053 M 1053
>gi|116194666|ref|XP_001223145.1| hypothetical protein CHGG_03931 [Chaetomium globosum CBS 148.51]
gi|88179844|gb|EAQ87312.1| hypothetical protein CHGG_03931 [Chaetomium globosum CBS 148.51]
Length = 1715
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 292/683 (42%), Positives = 384/683 (56%), Gaps = 133/683 (19%)
Query: 19 PSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREI 78
PS K +NK + E YQK +QL+HI+ RPDTYIGSVE + MW+ N+ ME R +
Sbjct: 101 PSAKPAAKSNKTATE-TYQKLTQLQHIIKRPDTYIGSVERTDQKMWVYNKAEKLMENRTV 159
Query: 79 TYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKM 138
+VPGLYKIFDEILVNA DN QRD M +K+TV++ET ISV NNGKGIP+ H+ EK
Sbjct: 160 GFVPGLYKIFDEILVNAADNSQRDSSMTYLKVTVDRETGEISVENNGKGIPIEMHEKEKC 219
Query: 139 FVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLC 198
++P +IFGHLLT SNY +D+E K GGRNGYGAKL
Sbjct: 220 YIPELIFGHLLTGSNY-------------------------DDDEKKTVGGRNGYGAKLT 254
Query: 199 NIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKM-T 257
NIFS KF +E S+ K +KQ W +NM K+ +I S DF K++F PD +F M
Sbjct: 255 NIFSQKFSIELQDSKNGKRYKQTWTENMGKMEKAKINSNKSADFVKVSFLPDYKRFGMED 314
Query: 258 SLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR-QDEDGD----- 311
+D D+ LI RR YD A + +KV+LNGE L + NF+ Y +LY +E GD
Sbjct: 315 GIDDDLEGLIYRRVYDMAGTVSGIKVWLNGEHLKI-NFKTYCELYAKSIANERGDVAVDG 373
Query: 312 -----PVKIIYENVNPR-WEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQII 365
V+ + N R W++ SD FQQVSFVN+IATT GG HV+ + D I +
Sbjct: 374 EKPVAKVEFDQQRHNGRLWQIGFTVSDGSFQQVSFVNNIATTSGGTHVNYIADQICDALA 433
Query: 366 EVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIF 425
+ + KK K G +LKP +NHI+IF
Sbjct: 434 KELTKKKK------------------------------------GHSLKPSHFRNHIFIF 457
Query: 426 INCLIVNPTFDSQTKENMTLQKGSFGSTCV------------------------------ 455
INCLI NP F+SQTKE +T + +FGS CV
Sbjct: 458 INCLIDNPAFNSQTKEQLTTKMSAFGSKCVLSDQFLKKVKASEAIANIMEFADRKADKMM 517
Query: 456 -------------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFP 502
KL DAN AGT+ +CTLILTEGDSA+ LAV+G V+ D+ GVFP
Sbjct: 518 AKSDGNKRSRISNDKLIDANWAGTRRGHECTLILTEGDSARGLAVAGRAVLDPDRIGVFP 577
Query: 503 LRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQD 562
LRGK+LNVR+A+ +QI++N EI N+ K LGL++ + YT D K LRYG LMIM DQD D
Sbjct: 578 LRGKMLNVRDASLEQIMKNKEIENIKKFLGLKHKQNYT---DTKGLRYGHLMIMADQDLD 634
Query: 563 GSHIKGLIINFIHHNWPTLLRL-PFLEEFITPIIKA------TKAREELSFYSLPEFEEW 615
GSHIKGL+INF+ +P+LLR+ F +EFITP++K K + +F++LP++E W
Sbjct: 635 GSHIKGLLINFLEVQFPSLLRIDDFFQEFITPVVKVWQGSNPKKPQNLKTFFNLPQYETW 694
Query: 616 KEETTNWHTYKIKYYKVVYVTGV 638
K+ H ++ +K Y+ G+
Sbjct: 695 KDS----HKSDLRRWKYKYLKGL 713
Score = 111 bits (278), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 81/123 (65%), Gaps = 11/123 (8%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP--------LP 711
IEP+ Y+PI+PMVLVNGA+GIGTGW T IPN++P EIVDN+KR + DP P
Sbjct: 921 IEPKVYVPILPMVLVNGADGIGTGWSTSIPNYHPIEIVDNLKRRMGRLDPEDSEEKAFKP 980
Query: 712 MKPWYKNFKGEIDYCGDSRFVVNGEIAILDD--DKLEITELQVGKWTTDYKDTLDTLLHG 769
M PW++ +KG ++ G +R+ NG I + +++ +TEL + WT D+K L+ +L
Sbjct: 981 MTPWFRGWKGVLESDGPNRYKFNGIIQQDEQNPNEIHVTELPIRMWTDDFKSKLEDILR- 1039
Query: 770 AEK 772
AEK
Sbjct: 1040 AEK 1042
Score = 47.8 bits (112), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 73/180 (40%), Gaps = 20/180 (11%)
Query: 835 DDEAGSQTQEEEDPD---KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPT 891
D+E G E+ED +DYDYLL M WSLT ER +L + K E + L +
Sbjct: 1190 DEELGKDDAEDEDTSNGARDYDYLLSMPIWSLTNERLEKLKNQIAAKKAEHDELDALSEK 1249
Query: 892 DLWSDDLDALREKDKIHPCPGGNRTRGLAL--KRQTRYQPSNRVLTSRDEPMVVSSGEDA 949
DLW DLD ++ T + +R +R + R +D+ +
Sbjct: 1250 DLWIKDLDEFVDEWHTQLKLDAEITADIRRMGRRTSRKIGAGRGRRPKDDDEYAPEKKTK 1309
Query: 950 PPPTKASPVKKKK--------PAAKRPAPKSDSSDLSDSDGDSDFASRKKKTAAAKKAKP 1001
K V+ K AA P PK D S D DFA KK A ++++P
Sbjct: 1310 AKAPKVEKVETKTHQRFTEKFQAAANPKPKIDLS-------DDDFALLGKKAAVKQESEP 1362
>gi|449463998|ref|XP_004149716.1| PREDICTED: DNA topoisomerase 2-like [Cucumis sativus]
Length = 1459
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 300/669 (44%), Positives = 376/669 (56%), Gaps = 156/669 (23%)
Query: 14 QNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHM 73
QN N + K ++E++YQKKSQLEHILLRPDTY+GS+E T+ +W+ E M
Sbjct: 10 QNSNAANVDSNPAGPKKTIEEMYQKKSQLEHILLRPDTYVGSIEKHTQNLWVY--ENEKM 67
Query: 74 ERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEH 133
R I+YVPGLYKIFDEILVNA DNKQRDP M+ +K+ ++ E N ISV+NNG G+PV H
Sbjct: 68 VHRSISYVPGLYKIFDEILVNAADNKQRDPSMDSVKVNIDVEQNCISVFNNGDGVPVEIH 127
Query: 134 KDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGY 193
++EK++VP +IF GHLLTSSNY+D E K TGGRNGY
Sbjct: 128 QEEKVYVPELIF-------------------------GHLLTSSNYDDTEKKTTGGRNGY 162
Query: 194 GAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLT 252
GAKL NIFSS+FV+ET+ K +KQV+ DNM K + P I K + D++T++TF PDL
Sbjct: 163 GAKLTNIFSSEFVIETADGRRLKKYKQVFNDNMGKKSEPIITKCKAGDNWTRVTFKPDLE 222
Query: 253 KFKMTSLDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDE-DG 310
KF MT L+ D+V L+ +R D A K VKV LNG+++PV++FQDYV LY
Sbjct: 223 KFNMTHLEDDVVALMKKRVLDLAGCLGKTVKVELNGQRVPVRSFQDYVDLYLKSASSIQA 282
Query: 311 DPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKK 370
+P K + N RWE+ + S+ FQQVSFVN IAT KGG HV+ + + I ++
Sbjct: 283 EPPKRYHIRPNERWEIVVTLSEGQFQQVSFVNGIATIKGGTHVEYITNQIANFVM----- 337
Query: 371 KNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLI 430
T + N +N VK+++W+FIN LI
Sbjct: 338 -------TAVNKKNKNANVKAHN------------------------VKSYLWVFINALI 366
Query: 431 VNPTFDSQTKENMTLQKGSFGSTC------------------------------------ 454
NP+FDSQTKE +T + SFGS C
Sbjct: 367 DNPSFDSQTKETLTKRANSFGSACELTPDFLKNVATKSGIMDSVLSWVNFKQSKDLKKTD 426
Query: 455 ---------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRG 505
+ KLEDAN AG KNS CTLILTEGDSAK+LA++GLGVVGRD YGVFPLRG
Sbjct: 427 GAKTEKISGIEKLEDANCAGGKNSEKCTLILTEGDSAKALAMAGLGVVGRDFYGVFPLRG 486
Query: 506 KLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSH 565
KLLNVREA+ K QD DGSH
Sbjct: 487 KLLNVREASSK------------------------------------------QDHDGSH 504
Query: 566 IKGLIINFIHHNWPTLLRLP-FLEEFITPIIKAT-KAREELSFYSLPEFEEWKEETT-NW 622
IKGL+INFIH WP+LLR+P FL EFITPI+KAT K LSFY++PE+E WKE N
Sbjct: 505 IKGLLINFIHSFWPSLLRVPSFLVEFITPIVKATHKNGTVLSFYTMPEYEAWKESLRGNA 564
Query: 623 HTYKIKYYK 631
+ IKYYK
Sbjct: 565 SGWSIKYYK 573
Score = 138 bits (347), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 81/117 (69%), Gaps = 4/117 (3%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY+PIIP VLVNG+EGIGTGW + +PN+NPR+I+ N++RM+ GE LPM PWY+ F
Sbjct: 783 IEPTWYMPIIPTVLVNGSEGIGTGWSSYVPNYNPRDIIRNVRRMLEGETMLPMDPWYRGF 842
Query: 720 KGEIDYC----GDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G I+ G + + V+G I + D L I EL V +WT+DYKD LD++ A K
Sbjct: 843 SGTIEKTATKEGGTTYTVSGIIEEVSDTTLRIVELPVRRWTSDYKDFLDSVTRVASK 899
Score = 49.7 bits (117), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 18/108 (16%)
Query: 827 ERQAAEGEDDEAGSQTQEEEDPD-------KDYDYLLGMTFWSLTMERKNELLKKRDDKM 879
E A E DEA EE P+ DY+YLL + +LT+E+ EL RD
Sbjct: 1054 EIAGASNETDEA------EESPEVVKGERISDYEYLLALPIGTLTIEKVQELCSDRDKLK 1107
Query: 880 TELNILKKKAPTDLWSDDLDAL-REKDKIHPCPGGNRTRGLALKRQTR 926
E++ L+K P LW +DLD L +E D++ N + + L++Q R
Sbjct: 1108 GEVDDLRKATPKSLWLNDLDYLEKELDEMDR----NDAQTMELRKQQR 1151
>gi|398018328|ref|XP_003862343.1| DNA topoisomerase ii [Leishmania donovani]
gi|322500572|emb|CBZ35649.1| DNA topoisomerase ii [Leishmania donovani]
Length = 1498
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 289/660 (43%), Positives = 381/660 (57%), Gaps = 122/660 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+VE+IYQKK+Q +HIL RPD YIG++EP+T+ +W+ + N M++R+ T+ PGLYKIFDE
Sbjct: 4 TVEQIYQKKTQHDHILTRPDMYIGTIEPVTDDIWVYDDAENTMKQRKCTWTPGLYKIFDE 63
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNK RDP + I V N + V+NNG+GIP+ +H++ ++VP MIF
Sbjct: 64 ILVNAADNKVRDPIGQTV-IRVWMTENYVRVYNNGEGIPIQKHREHDLWVPEMIF----- 117
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
GHLLTSSNY+DEE KVTGGRNG+GAKL N+FS +F VET
Sbjct: 118 --------------------GHLLTSSNYDDEEAKVTGGRNGFGAKLTNVFSKQFEVETV 157
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
S +K F W +NM + P I D+T +TF PD F + +DM+ ++ RR
Sbjct: 158 HSRSRKKFYMKWANNMLQHDDPVIVPCDSADYTMVTFYPDFALFHVDKFSEDMLLMMKRR 217
Query: 271 AYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIA 329
YD A T K +K FLN E++ F +YV LY +E Y VN RWEV +
Sbjct: 218 VYDVAGCTDKTLKCFLNDERIACTTFPEYVDLYPTMGEERKAAS---YSRVNDRWEVCVR 274
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
S+ G QQVSFVNSIATT+GG HV ++D I+ +++E KKK K
Sbjct: 275 VSNIGPQQVSFVNSIATTRGGTHVKYIMDQIISKVVEQAKKKKK---------------- 318
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
+KP ++ HI++F+NCLI NP FDSQTKE + K
Sbjct: 319 ---------------------TDVKPHMIRPHIFLFVNCLIENPGFDSQTKETLNTVKSK 357
Query: 450 FGSTC---------------------------------------------VPKLEDANDA 464
FGSTC +PKL+DAN+A
Sbjct: 358 FGSTCDLPNSIVDYIMSSGIVERSVEMANSKIAREMASKMRSSDRKQIMGIPKLDDANEA 417
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
G K+S CTLILTEGDSAK+L +GL V RD +GVFPLRGK LNVREA+ K++ EI
Sbjct: 418 GGKHSHRCTLILTEGDSAKTLCTAGLAVKDRDYFGVFPLRGKPLNVREASLKKLAACEEI 477
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
++KI+GL +KY E+ LRYG LMIM+DQD DGSHIKGL+INFIH WP LLR+
Sbjct: 478 QCVMKIMGLDIRQKY---ENADGLRYGHLMIMSDQDHDGSHIKGLLINFIHCFWPNLLRV 534
Query: 585 P-FLEEFITPIIKAT-----KAREELSFYSLPEFEEWKEET-TNWHTYKIKYYKVVYVTG 637
P FL++FITPI+KA A + +SF+S+P++ EWK+ N Y+I+YYK + +G
Sbjct: 535 PGFLQQFITPIVKARPKGRGGAGKAISFFSMPDYFEWKKAIGDNLSNYQIRYYKGLGTSG 594
Score = 114 bits (284), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 72/107 (67%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP +YIP+IPMVLVNG GIGTG+ T IPN+NP EI+ N++R++RGE+ M+PWY F
Sbjct: 802 VEPFFYIPVIPMVLVNGTTGIGTGFSTSIPNYNPLEIISNLERLMRGEEVHKMQPWYFGF 861
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
G ++ +FV +G I D + ITEL +G WT YK L+ +
Sbjct: 862 TGTMEEKEPGKFVSHGRYEIRPDGVVCITELPIGVWTQAYKKFLEDM 908
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
+DYDYLLGM WSLT E L + D + ++ + P D+W +DL LR K
Sbjct: 1103 RDYDYLLGMKLWSLTAEMIARLEAQMDRARRDTATMEARTPKDMWMEDLKVLRTK 1157
>gi|389628778|ref|XP_003712042.1| DNA topoisomerase 2 [Magnaporthe oryzae 70-15]
gi|351644374|gb|EHA52235.1| DNA topoisomerase 2 [Magnaporthe oryzae 70-15]
Length = 1686
Score = 515 bits (1326), Expect = e-142, Method: Compositional matrix adjust.
Identities = 288/676 (42%), Positives = 387/676 (57%), Gaps = 132/676 (19%)
Query: 26 PANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLY 85
P K + + YQK +QLEHI+ RPDTYIGSVE MW N++T +E R + +VPGLY
Sbjct: 122 PQTKKTATETYQKLTQLEHIIKRPDTYIGSVERTETKMWTFNKQTGLVENRIVAFVPGLY 181
Query: 86 KIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIF 145
KIFDEILVNA DN QRD M +K+TV++E+ ISV NNGKGIPV H+ EK+++P +IF
Sbjct: 182 KIFDEILVNAADNSQRDKTMTYLKVTVDRESGQISVENNGKGIPVEMHEKEKVYIPELIF 241
Query: 146 GHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF 205
GHLLT SN Y+D+E K GGRNGYGAKL NIFS++F
Sbjct: 242 GHLLTGSN-------------------------YDDKELKTVGGRNGYGAKLTNIFSTEF 276
Query: 206 VVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKM-TSLDKDMV 264
++E S K +KQ W +NMS +I S DF ++TFTPD +F M +D D+
Sbjct: 277 ILEAQDSSNGKRYKQTWTNNMSNCGKAKITSNKTQDFVRVTFTPDYARFGMPDGIDDDLE 336
Query: 265 DLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYT-----DRQD----EDGDPVK 314
L+ RR YD A + +VKV LNGE+L V NF+ Y ++Y +R D ED +
Sbjct: 337 GLLYRRVYDMAGTLDSNVKVHLNGEQLKV-NFKKYCEMYAKSIAQERDDVPEGEDSKVAE 395
Query: 315 IIYEN--VNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKN 372
+I+E+ + RW+V SD FQQVSFVNSIATT+GG HV+ + D I ++ + KK
Sbjct: 396 VIFEDPKAHKRWKVGFTVSDGQFQQVSFVNSIATTQGGTHVNYIADQITAALLADLNKKK 455
Query: 373 KDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVN 432
K G +LK +KN+I+IF+ CLI N
Sbjct: 456 K------------------------------------GHSLKQHNIKNYIFIFVTCLIEN 479
Query: 433 PTFDSQTKENMTLQKGSFGSTCV------------------------------------- 455
P F SQTKE +T + FGS C
Sbjct: 480 PAFTSQTKEQLTTKASQFGSKCPLTEPFLKKVRQTEAIENIIHFAEKKADKMLSKSDGNK 539
Query: 456 ------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLN 509
KL DAN AGTK+ +CTL+LTEGDSA+ LAV+G ++ D+ GVFPLRGK+LN
Sbjct: 540 RSRISNEKLVDANLAGTKHGHECTLVLTEGDSARGLAVAGRAILDPDRIGVFPLRGKMLN 599
Query: 510 VREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGL 569
VR+A+ QIL+N EI N+ + LGL++ + YT D K LRYG LMIM DQD DGSHIKGL
Sbjct: 600 VRDASIDQILKNKEIQNIKQFLGLKHKQVYT---DTKGLRYGHLMIMADQDHDGSHIKGL 656
Query: 570 IINFIHHNWPTLLRLP-FLEEFITPIIKA------TKAREELSFYSLPEFEEWKEETTNW 622
+INF+ +P+LL++P F +EFITP++K K + +F+++P++EEWKE
Sbjct: 657 LINFLQVQFPSLLQIPDFFQEFITPVVKVWQGSNPKKPTKLKTFFNMPQYEEWKEA---- 712
Query: 623 HTYKIKYYKVVYVTGV 638
H ++I+ + Y+ G+
Sbjct: 713 HKHEIRRWDYKYLKGL 728
Score = 105 bits (261), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 81/124 (65%), Gaps = 13/124 (10%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIK-RMIRGEDP-----LPMK 713
IEP+ Y P+IPMVLVNGA+GIGTGW T IPN++P EIV NIK RM R + P PM
Sbjct: 936 IEPKVYAPVIPMVLVNGADGIGTGWSTSIPNYHPEEIVRNIKRRMGRLDVPEEQEFEPMT 995
Query: 714 PWYKNFKG--EIDYCGDSRFVVNGEIAILDD---DKLEITELQVGKWTTDYKDTLDTLLH 768
PW++ +KG E + RF NG IA LDD +++ ITEL + WT D+K L+ ++
Sbjct: 996 PWWRGWKGTPEPEDASRIRFKFNG-IANLDDKNPNEVVITELPIRMWTDDFKARLEEIIR 1054
Query: 769 GAEK 772
AEK
Sbjct: 1055 -AEK 1057
Score = 46.2 bits (108), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 99/289 (34%), Gaps = 63/289 (21%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL--------- 901
DYDYLL M WSLT ER L K+ + K E + L K+ DLW DLD
Sbjct: 1226 DYDYLLSMAIWSLTHERLERLKKQLEAKKAEFDELNSKSEKDLWCKDLDDFVMEWENQLK 1285
Query: 902 ----------REKDKIHPCPGGNRTRGLALKRQTRYQPSNRVL---------------TS 936
R ++ G ++ G K Y P+ T
Sbjct: 1286 LDAEIQTNIRRMGRRVSRKIGAGKSGGRKAKADDDYAPTKAKAPAKAKPKAEAKKVPETK 1345
Query: 937 RDEPMVVSSGEDAPPPTKASP------------------VKKKKPAAKRPAPKSDSSDLS 978
E + ++ PP KA+P K K K P+P +
Sbjct: 1346 THERWDAALKAESKPPVKAAPKSQLDGVDDFSDDDFAALSKPKTTIKKEPSPVEEV---- 1401
Query: 979 DSDGDSDFASRKKKTAAAKKAKPAKKESEYSSTVCLFKRFGRRNCNDGGLIPKSQREGAQ 1038
GD A TA +K+A KK+ F + +D G + K + A
Sbjct: 1402 ---GDESLAPI---TARSKRAAATKKKQWIVDDDESESDFDDKMLDDVGAMVKGINKSAD 1455
Query: 1039 DSDLENNCRLDEVERKEKEEENSNITKIKSKLKEKGSKKRNPLSSLDDT 1087
D+ N L + E S TK+KSK + K+ S D+T
Sbjct: 1456 DTG-PNRLSLFAMNNGENAASTSAFTKLKSKQSKTFEPKKFDFDSPDET 1503
>gi|440474068|gb|ELQ42835.1| DNA topoisomerase 2 [Magnaporthe oryzae Y34]
gi|440485894|gb|ELQ65810.1| DNA topoisomerase 2 [Magnaporthe oryzae P131]
Length = 1680
Score = 515 bits (1326), Expect = e-142, Method: Compositional matrix adjust.
Identities = 288/676 (42%), Positives = 387/676 (57%), Gaps = 132/676 (19%)
Query: 26 PANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLY 85
P K + + YQK +QLEHI+ RPDTYIGSVE MW N++T +E R + +VPGLY
Sbjct: 122 PQTKKTATETYQKLTQLEHIIKRPDTYIGSVERTETKMWTFNKQTGLVENRIVAFVPGLY 181
Query: 86 KIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIF 145
KIFDEILVNA DN QRD M +K+TV++E+ ISV NNGKGIPV H+ EK+++P +IF
Sbjct: 182 KIFDEILVNAADNSQRDKTMTYLKVTVDRESGQISVENNGKGIPVEMHEKEKVYIPELIF 241
Query: 146 GHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF 205
GHLLT SN Y+D+E K GGRNGYGAKL NIFS++F
Sbjct: 242 GHLLTGSN-------------------------YDDKELKTVGGRNGYGAKLTNIFSTEF 276
Query: 206 VVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKM-TSLDKDMV 264
++E S K +KQ W +NMS +I S DF ++TFTPD +F M +D D+
Sbjct: 277 ILEAQDSSNGKRYKQTWTNNMSNCGKAKITSNKTQDFVRVTFTPDYARFGMPDGIDDDLE 336
Query: 265 DLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYT-----DRQD----EDGDPVK 314
L+ RR YD A + +VKV LNGE+L V NF+ Y ++Y +R D ED +
Sbjct: 337 GLLYRRVYDMAGTLDSNVKVHLNGEQLKV-NFKKYCEMYAKSIAQERDDVPEGEDSKVAE 395
Query: 315 IIYEN--VNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKN 372
+I+E+ + RW+V SD FQQVSFVNSIATT+GG HV+ + D I ++ + KK
Sbjct: 396 VIFEDPKAHKRWKVGFTVSDGQFQQVSFVNSIATTQGGTHVNYIADQITAALLADLNKKK 455
Query: 373 KDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVN 432
K G +LK +KN+I+IF+ CLI N
Sbjct: 456 K------------------------------------GHSLKQHNIKNYIFIFVTCLIEN 479
Query: 433 PTFDSQTKENMTLQKGSFGSTCV------------------------------------- 455
P F SQTKE +T + FGS C
Sbjct: 480 PAFTSQTKEQLTTKASQFGSKCPLTEPFLKKVRQTEAIENIIHFAEKKADKMLSKSDGNK 539
Query: 456 ------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLN 509
KL DAN AGTK+ +CTL+LTEGDSA+ LAV+G ++ D+ GVFPLRGK+LN
Sbjct: 540 RSRISNEKLVDANLAGTKHGHECTLVLTEGDSARGLAVAGRAILDPDRIGVFPLRGKMLN 599
Query: 510 VREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGL 569
VR+A+ QIL+N EI N+ + LGL++ + YT D K LRYG LMIM DQD DGSHIKGL
Sbjct: 600 VRDASIDQILKNKEIQNIKQFLGLKHKQVYT---DTKGLRYGHLMIMADQDHDGSHIKGL 656
Query: 570 IINFIHHNWPTLLRLP-FLEEFITPIIKA------TKAREELSFYSLPEFEEWKEETTNW 622
+INF+ +P+LL++P F +EFITP++K K + +F+++P++EEWKE
Sbjct: 657 LINFLQVQFPSLLQIPDFFQEFITPVVKVWQGSNPKKPTKLKTFFNMPQYEEWKEA---- 712
Query: 623 HTYKIKYYKVVYVTGV 638
H ++I+ + Y+ G+
Sbjct: 713 HKHEIRRWDYKYLKGL 728
Score = 105 bits (262), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 81/124 (65%), Gaps = 13/124 (10%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIK-RMIRGEDP-----LPMK 713
IEP+ Y P+IPMVLVNGA+GIGTGW T IPN++P EIV NIK RM R + P PM
Sbjct: 936 IEPKVYAPVIPMVLVNGADGIGTGWSTSIPNYHPEEIVRNIKRRMGRLDVPEEQEFEPMT 995
Query: 714 PWYKNFKG--EIDYCGDSRFVVNGEIAILDD---DKLEITELQVGKWTTDYKDTLDTLLH 768
PW++ +KG E + RF NG IA LDD +++ ITEL + WT D+K L+ ++
Sbjct: 996 PWWRGWKGTPEPEDASRIRFKFNG-IANLDDKNPNEVVITELPIRMWTDDFKARLEEIIR 1054
Query: 769 GAEK 772
AEK
Sbjct: 1055 -AEK 1057
>gi|74025306|ref|XP_829219.1| DNA topoisomerase II [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834605|gb|EAN80107.1| DNA topoisomerase II, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 1424
Score = 514 bits (1325), Expect = e-142, Method: Compositional matrix adjust.
Identities = 286/662 (43%), Positives = 380/662 (57%), Gaps = 123/662 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+VE+IYQKK+Q EHIL RPD YIG++EP+TE +W+ + N M+ R+ T+ PGLYKIFDE
Sbjct: 5 TVEEIYQKKTQHEHILARPDMYIGTIEPVTEDVWVYDEADNVMKLRKCTWTPGLYKIFDE 64
Query: 91 ILVNACDNKQRDPK-MNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
ILVNA DNK RDP IK+ V+ + V+NNG+GIPV H++ ++VP MIF
Sbjct: 65 ILVNAADNKVRDPHGQTTIKVWVDAARGLVRVYNNGEGIPVQRHREHDLWVPEMIF---- 120
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
GHLLTSSNY+D E KVTGGRNG+GAKL N+FS++F VET
Sbjct: 121 ---------------------GHLLTSSNYDDTEAKVTGGRNGFGAKLTNVFSTRFEVET 159
Query: 210 SCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
S +K F W++NM + I D+T +TF PD KF + +DMV ++ R
Sbjct: 160 VHSRSRKKFFMRWRNNMLENEEAVITPCDGPDYTVVTFYPDFEKFNLEGFTEDMVLIMQR 219
Query: 270 RAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAI 328
R YD A T K + +LN ++ ++F +YV LY E+ P Y VN RWEV +
Sbjct: 220 RVYDIAGCTDKSLCCYLNDTRIACRSFPEYVDLYPT-MGEERKPSS--YSRVNDRWEVCV 276
Query: 329 APSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
S+ GFQQVSFVNSIATT+GG HV +VD I+ ++ + +K+K
Sbjct: 277 RVSNVGFQQVSFVNSIATTRGGTHVKYIVDQIIAKVTDQAMRKSK--------------- 321
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
+KP ++ H++IF+N LI NP+FDSQTKE + K
Sbjct: 322 ----------------------TEVKPHMIRPHLFIFVNSLIENPSFDSQTKETLNTPKA 359
Query: 449 SFGSTC---------------------------------------------VPKLEDAND 463
FGSTC +PKL+DAN+
Sbjct: 360 RFGSTCDLPASLIDCVLKSSIVERAVEMANSRLNREMAMKMRNTNRKQILGIPKLDDANE 419
Query: 464 AGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAE 523
AG K S CTLILTEGDSAK+L +GL V RD +GVFPLRGK LNVR+A+ K+++ AE
Sbjct: 420 AGGKYSQRCTLILTEGDSAKALCTAGLAVENRDYFGVFPLRGKPLNVRDASVKKVMGCAE 479
Query: 524 INNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR 583
+ KI+GL S+KYT+ E LRYG LMIM+DQD DGSHIKGLIIN IH+ WP LL+
Sbjct: 480 FQAVSKIMGLDLSQKYTSTE---GLRYGHLMIMSDQDHDGSHIKGLIINMIHNYWPDLLK 536
Query: 584 LP-FLEEFITPIIKATKARE------ELSFYSLPEFEEWKEET-TNWHTYKIKYYKVVYV 635
+P FL++FITPI+KA K +SF+S+P++ EWK Y+++YYK +
Sbjct: 537 VPGFLQQFITPIVKARKKGRGNNDEGTISFFSMPDYFEWKNAVGEGIKNYELRYYKGLGT 596
Query: 636 TG 637
+G
Sbjct: 597 SG 598
Score = 117 bits (293), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 72/107 (67%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP +Y+P+IPMVLVNG GIGTG+ T IPN++P +++DN+ R++ GE+ PMKPWY F
Sbjct: 806 VEPFYYVPVIPMVLVNGTAGIGTGFATNIPNYSPLDVIDNLNRLLSGEELQPMKPWYFGF 865
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
G I+ +FV +G + D + ITEL +G WT YK L+ L
Sbjct: 866 TGTIEEREKGKFVSSGCATVRPDGVVHITELPIGTWTQQYKKFLEDL 912
>gi|402082870|gb|EJT77888.1| DNA topoisomerase 2 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1699
Score = 513 bits (1322), Expect = e-142, Method: Compositional matrix adjust.
Identities = 284/678 (41%), Positives = 398/678 (58%), Gaps = 134/678 (19%)
Query: 26 PANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLY 85
P + S + YQK +QLEHI+ RPDTYIGSVE + +W+ N+ET +E R + +VPGLY
Sbjct: 123 PKSNKSATETYQKLTQLEHIIKRPDTYIGSVERTDQKLWVFNKETQLVENRTVNFVPGLY 182
Query: 86 KIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIF 145
KIFDEILVNA DN QRD M +K+T+++E+ ISV NNGKGIPV H+ EK+++P +IF
Sbjct: 183 KIFDEILVNAADNSQRDKTMTALKVTIDRESGQISVENNGKGIPVEMHEKEKVYIPELIF 242
Query: 146 GHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF 205
GHLLT SN Y+D+E K GGRNGYGAKL NIFS++F
Sbjct: 243 GHLLTGSN-------------------------YDDKELKTVGGRNGYGAKLTNIFSTEF 277
Query: 206 VVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKM-TSLDKDMV 264
++E S K++ Q W +NM P+IK+ D+ ++TF PD +F M +D D+
Sbjct: 278 ILECQDSNNGKNYSQRWTNNMGVCEKPKIKAKKSADYVRVTFKPDYKRFGMENGIDDDLE 337
Query: 265 DLITRRAYDAAASTK-DVKVFLNGEKLPVKNFQDYVKLYT-----DRQD-----EDGDPV 313
L+ RR YD A + + ++KVFLNGE+L + NF+ Y ++Y +R D +G PV
Sbjct: 338 GLMYRRVYDMAGTLESNIKVFLNGEQLKI-NFKKYCEMYAKSIAKERDDVAPEGAEGAPV 396
Query: 314 -KIIYEN--VNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKK 370
++I+E+ ++ RW+VA SD FQQVSFVNSIATT GG H + + D I + ++ + K
Sbjct: 397 AEVIFEDPKLHTRWKVAFTVSDGSFQQVSFVNSIATTSGGTHTNYIADQICQALLADLNK 456
Query: 371 KNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLI 430
K K G +LK ++N+I+IF++ L+
Sbjct: 457 KKK------------------------------------GHSLKLNHIRNYIFIFVSALV 480
Query: 431 VNPTFDSQTKENMTLQKGSFGSTCV----------------------------------- 455
NP F SQTKE MT + +FGS C
Sbjct: 481 ENPAFTSQTKEQMTTKASAFGSKCTLSDAFLKKVKQTEAIENIIHFAEKKADKMLSKSDG 540
Query: 456 --------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKL 507
KL +AN AGT++ +CTLILTEGDSA+ LAV+G V+ D+ GVFPLRGK+
Sbjct: 541 NKRSRISNDKLVEANLAGTRHGHECTLILTEGDSARGLAVAGRAVLDPDRIGVFPLRGKM 600
Query: 508 LNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIK 567
LNVR+A +QIL+N EI N+ + LGL++ + YT D K+LRYG LMIM DQD DGSHIK
Sbjct: 601 LNVRDAPVEQILKNKEIQNIKQFLGLKHKQNYT---DTKSLRYGHLMIMADQDHDGSHIK 657
Query: 568 GLIINFIHHNWPTLLRLP-FLEEFITPIIK---ATKAREEL---SFYSLPEFEEWKEETT 620
GL+INF+ +P+LL++P F +EFITP++K + ++ L SF++LP++EEWKE
Sbjct: 658 GLLINFLQVQFPSLLQIPDFFQEFITPVVKVWQGSNPKKPLRLKSFFNLPQYEEWKEA-- 715
Query: 621 NWHTYKIKYYKVVYVTGV 638
H ++I+ + Y+ G+
Sbjct: 716 --HKHEIRRWDYKYLKGL 731
Score = 107 bits (268), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 81/121 (66%), Gaps = 9/121 (7%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKR---MIRGEDPLP---MK 713
IEP+ Y P+IPMVLVNGA+GIGTGW T IPN++P++IVDN++R + GE+ P M
Sbjct: 939 IEPKTYAPVIPMVLVNGADGIGTGWSTSIPNYHPKDIVDNLRRRMGRMDGEEEQPFQTML 998
Query: 714 PWYKNFKGEIDYCGDSRFVVNG--EIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAE 771
PW++ +KG + G R+ NG E+ + +++ ITEL + WT D+K L+ ++ AE
Sbjct: 999 PWFRGWKGSVRAEGPGRYSFNGTAEVDEKNPNEVVITELPIRMWTDDFKAKLEDIIR-AE 1057
Query: 772 K 772
K
Sbjct: 1058 K 1058
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 821 PQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMT 880
P+ E +R + ED+E + E+E DYDYLL M WSLT ER +L K D K
Sbjct: 1195 PKTEAAKRAKEDDEDNEPAEE--EDEGSASDYDYLLSMAIWSLTYERLEKLKKLIDAKKA 1252
Query: 881 ELNILKKKAPTDLWSDDLDALREK 904
E + L+ K+ DLW DLD E+
Sbjct: 1253 EYDDLESKSEKDLWCKDLDDFMEE 1276
>gi|339898748|ref|XP_001470271.2| DNA topoisomerase ii [Leishmania infantum JPCM5]
gi|321398489|emb|CAM69466.2| DNA topoisomerase ii, partial [Leishmania infantum JPCM5]
Length = 1252
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 289/660 (43%), Positives = 381/660 (57%), Gaps = 122/660 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+VE+IYQKK+Q +HIL RPD YIG++EP+T+ +W+ + N M++R+ T+ PGLYKIFDE
Sbjct: 4 TVEQIYQKKTQHDHILTRPDMYIGTIEPVTDDIWVYDDAENTMKQRKCTWTPGLYKIFDE 63
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNK RDP + I V N + V+NNG+GIP+ +H++ ++VP MIF
Sbjct: 64 ILVNAADNKVRDPIGQTV-IRVWMTENYVRVYNNGEGIPIQKHREHDLWVPEMIF----- 117
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
GHLLTSSNY+DEE KVTGGRNG+GAKL N+FS +F VET
Sbjct: 118 --------------------GHLLTSSNYDDEEAKVTGGRNGFGAKLTNVFSKQFEVETV 157
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
S +K F W +NM + P I D+T +TF PD F + +DM+ ++ RR
Sbjct: 158 HSRSRKKFYMKWANNMLQHDDPVIVPCDSADYTMVTFYPDFALFHVDKFSEDMLLMMKRR 217
Query: 271 AYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIA 329
YD A T K +K FLN E++ F +YV LY +E Y VN RWEV +
Sbjct: 218 VYDVAGCTDKTLKCFLNDERIACTTFPEYVDLYPTMGEERKAAS---YSRVNDRWEVCVR 274
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
S+ G QQVSFVNSIATT+GG HV ++D I+ +++E KKK K
Sbjct: 275 VSNIGPQQVSFVNSIATTRGGTHVKYIMDQIISKVVEQAKKKKK---------------- 318
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
+KP ++ HI++F+NCLI NP FDSQTKE + K
Sbjct: 319 ---------------------TDVKPHMIRPHIFLFVNCLIENPGFDSQTKETLNTVKSK 357
Query: 450 FGSTC---------------------------------------------VPKLEDANDA 464
FGSTC +PKL+DAN+A
Sbjct: 358 FGSTCDLPNSIVDYIMSSGIVERSVEMANSKIAREMASKMRSSDRKQIMGIPKLDDANEA 417
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
G K+S CTLILTEGDSAK+L +GL V RD +GVFPLRGK LNVREA+ K++ EI
Sbjct: 418 GGKHSHRCTLILTEGDSAKTLCTAGLAVKDRDYFGVFPLRGKPLNVREASLKKLAACEEI 477
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
++KI+GL +KY E+ LRYG LMIM+DQD DGSHIKGL+INFIH WP LLR+
Sbjct: 478 QCVMKIMGLDIRQKY---ENADGLRYGHLMIMSDQDHDGSHIKGLLINFIHCFWPNLLRV 534
Query: 585 P-FLEEFITPIIKAT-----KAREELSFYSLPEFEEWKEET-TNWHTYKIKYYKVVYVTG 637
P FL++FITPI+KA A + +SF+S+P++ EWK+ N Y+I+YYK + +G
Sbjct: 535 PGFLQQFITPIVKARPKGRGGAGKAISFFSMPDYFEWKKAIGDNLSNYQIRYYKGLGTSG 594
Score = 113 bits (283), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 72/107 (67%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP +YIP+IPMVLVNG GIGTG+ T IPN+NP EI+ N++R++RGE+ M+PWY F
Sbjct: 802 VEPFFYIPVIPMVLVNGTTGIGTGFSTSIPNYNPLEIISNLERLMRGEEVHKMQPWYFGF 861
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
G ++ +FV +G I D + ITEL +G WT YK L+ +
Sbjct: 862 TGTMEEKEPGKFVSHGRYEIRPDGVVCITELPIGVWTQAYKKFLEDM 908
Score = 51.6 bits (122), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
+DYDYLLGM WSLT E L + D + ++ + P D+W +DL LR K
Sbjct: 1103 RDYDYLLGMKLWSLTAEMIARLEAQMDRARRDTATMEARTPKDMWMEDLKVLRTK 1157
>gi|301110016|ref|XP_002904088.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
gi|262096214|gb|EEY54266.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
Length = 1505
Score = 511 bits (1317), Expect = e-141, Method: Compositional matrix adjust.
Identities = 294/715 (41%), Positives = 383/715 (53%), Gaps = 207/715 (28%)
Query: 11 DVQQNGNGPSPK------KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMW 64
DV +G+ +P K TP K S+E+IYQKK+QLEHILLRPDTY+GS+E + ++MW
Sbjct: 73 DVDGSGDEATPAANAEEGKGTP--KQSIEQIYQKKTQLEHILLRPDTYVGSIEHVEQSMW 130
Query: 65 LMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNN 124
+ + E M ++I YVPGLYKIFDEI+VNACDNKQRD MN +K+T++ E N ISVWNN
Sbjct: 131 VFDDEKQRMVLKKINYVPGLYKIFDEIIVNACDNKQRDKSMNTLKVTIDVEKNEISVWNN 190
Query: 125 GKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEED 184
GKGIP+V HK+ K++VP +IF GHLLT SN++D++
Sbjct: 191 GKGIPIVLHKEHKVYVPELIF-------------------------GHLLTGSNFDDKKK 225
Query: 185 KVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTK 244
K TGGRNGYGAKL NIFS++FVVET+ S K+ +KQV++ NMSK P I ++ DFT
Sbjct: 226 KTTGGRNGYGAKLANIFSNEFVVETADSSTKQKYKQVFESNMSKKNPPSITKWAQKDFTC 285
Query: 245 ITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA-STKDVKVFLNGEKLPVKNFQDYVKLY- 302
I+F PDL +FK+ L+ D+V L +R YD A S K + VFLNG+K+P+K+F YV LY
Sbjct: 286 ISFKPDLERFKLDFLNDDIVSLFKKRVYDVAGVSGKGMNVFLNGDKIPIKSFPQYVALYP 345
Query: 303 ----------------------------------TDRQDEDGDPVKI-----IYENVNPR 323
+ P + I+E + R
Sbjct: 346 GPRGYEADKDKDDEDAHPDENGDDDDEDYSEDKAKKAKAARAKPSNVTKNGVIFEKPDER 405
Query: 324 WEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLF 383
W+V + S+ GFQQ HV +VD I +++ V+KKKNK
Sbjct: 406 WQVGVGMSEDGFQQ--------------HVSYIVDQITAKLVSVLKKKNK---------- 441
Query: 384 GNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENM 443
G A+KP +KNH++++++ LI NP FDSQTKE +
Sbjct: 442 --------------------------GEAVKPNYIKNHMFVYVSALIDNPAFDSQTKETL 475
Query: 444 TLQKGSFGSTC----------------------------------------------VPK 457
T + SFGST +PK
Sbjct: 476 TTRANSFGSTFNLSDKFLKQLEKSGLVEKILSFAAFKQTAELRRKGGSSGKRSRLTGIPK 535
Query: 458 LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQ 517
L+DAN AGT S DCTLILTEGDSAK+
Sbjct: 536 LDDANHAGTAKSKDCTLILTEGDSAKT--------------------------------- 562
Query: 518 ILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHN 577
IL+N EI N+VKILGL+Y +KY E K LRYG LMIM DQD DGSHIKGL+IN IHH
Sbjct: 563 ILKNEEIQNVVKILGLKYGQKY---ESTKGLRYGHLMIMADQDHDGSHIKGLVINLIHHF 619
Query: 578 WPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
WP+LL + FL+EFITPI+K TK R + FY++PE+E W+E T + IKYYK
Sbjct: 620 WPSLLVVDGFLQEFITPIVKCTKGRTKEVFYTMPEYEAWRERTNQGRGWVIKYYK 674
Score = 127 bits (319), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 76/114 (66%), Gaps = 6/114 (5%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWYIPIIPMVLVNG++GIGTGW + +PN+NP +I+ +++MI GE+ P+ PWY+ F
Sbjct: 884 IEPEWYIPIIPMVLVNGSDGIGTGWSSSVPNYNPLDIIKGLRQMINGEEIAPLTPWYRGF 943
Query: 720 KGEIDYCGDSR------FVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
G I +SR ++V G + DD L ++EL V WT YK L+ LL
Sbjct: 944 TGHIVEKANSRGTDTGNYIVQGLYEVTDDSTLVVSELPVKSWTQTYKQFLEGLL 997
Score = 50.8 bits (120), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 847 DPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
D + YDYLL M WSLT ER ++L + ++ E ++L+ + DLW DLDAL
Sbjct: 1160 DVSRGYDYLLSMKIWSLTKERVDKLRAELQEREHEYSVLEGRTVQDLWLTDLDAL 1214
>gi|123484430|ref|XP_001324264.1| topoisomerase II [Trichomonas vaginalis G3]
gi|121907144|gb|EAY12041.1| topoisomerase II [Trichomonas vaginalis G3]
Length = 1458
Score = 511 bits (1317), Expect = e-141, Method: Compositional matrix adjust.
Identities = 283/652 (43%), Positives = 377/652 (57%), Gaps = 122/652 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K + EH+L RPD+YIGS+EP MW+ N E E REI+YVPGLYKIFDEILVNA
Sbjct: 17 YVKLTHREHVLTRPDSYIGSIEPRECKMWVCN-EDGKFEFREISYVPGLYKIFDEILVNA 75
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVE----HKDEKMFVPTMIFGHLLTS 151
DNKQRDP + IK+ V+ N ISVWN+GKGI + + + + ++P IF LLTS
Sbjct: 76 ADNKQRDPPLTTIKVEVDPAQNRISVWNDGKGISTQKQFSPNDNCEYYIPEFIFSQLLTS 135
Query: 152 SNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSC 211
SNYN D+++KVTGGRNGYGAKL NIFS KF +
Sbjct: 136 SNYN-------------------------DKQEKVTGGRNGYGAKLANIFSKKFHINIYN 170
Query: 212 SEYKKSFKQVWKDNMSKVTSPEIKSG-SKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
++ +++Q DNM+ + P++K+G K +T+I+F PDL +F + ++ KD VDLI RR
Sbjct: 171 ADEGINYQQTITDNMTNIQPPKLKNGKGKGSYTEISFWPDLERFNLQTITKDHVDLIRRR 230
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPR---WEVA 327
YD A VK+F NG ++P+K ++DY K+Y ED P ++ E N + W++
Sbjct: 231 VYDLAGILPKVKIFWNGNQVPIKKWEDYCKVYL---KEDVKP--LVCEVKNEKGYTWKIG 285
Query: 328 IAPS-DRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNK 386
+APS R FQQ+SFVN +AT+ GG HVD VV+ I K I + +K +
Sbjct: 286 VAPSKSREFQQISFVNCVATSNGGTHVDVVVNQITKYITDYLKNR--------------- 330
Query: 387 FNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ 446
R G + KP VKN +++F++ L++NP+FDSQTKE +TL
Sbjct: 331 --------------------RSGKVETKPSVVKNFLYVFVDSLVINPSFDSQTKERLTLD 370
Query: 447 KGSFGSTC-------------------------------------------VPKLEDAND 463
+ C + KLEDAN
Sbjct: 371 QKKLKDDCKLPDNFLDKILKTDIVALVTEYANFKEQRKVANMKGTKKGRLIINKLEDANM 430
Query: 464 AGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAE 523
AG S+ CTLILTEGDSAK+ AV+GL +GRD YGVFPLRGKLLN R+ + K++ EN E
Sbjct: 431 AGKAESLKCTLILTEGDSAKATAVTGLATIGRDYYGVFPLRGKLLNTRDISAKKLSENDE 490
Query: 524 INNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL- 582
I N++KI+GL +KY + MK LRYG +MIM DQD DGSHIKGLIINF+H WP LL
Sbjct: 491 IQNIIKIMGLDPMEKYENDDSMKRLRYGSIMIMADQDVDGSHIKGLIINFVHSMWPNLLK 550
Query: 583 RLPFLEEFITPIIKATKAREE---LSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+ F+ EFITPI+K TK + +SF+++PEF +WK N YK+KYYK
Sbjct: 551 KRNFITEFITPIVKVTKGNNKKGAISFFTIPEFSQWKAANNNGKGYKMKYYK 602
Score = 105 bits (263), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 73/119 (61%), Gaps = 9/119 (7%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP YIPIIPMVLVNGA+GIG GW +++P + P++I+DN++R + E + M PWY F
Sbjct: 813 IEPVTYIPIIPMVLVNGAKGIGVGWSSEVPQYCPQDIIDNLRRKMNDEPMVEMTPWYSGF 872
Query: 720 KGE---IDYCGDS------RFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHG 769
G+ I D ++ G + +DD +EITEL +G WT DYK L+ L G
Sbjct: 873 TGKIIPIQVIKDGVKQPIVKWESRGIVKKIDDTTIEITELPIGIWTYDYKKFLEGLTVG 931
Score = 45.8 bits (107), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 849 DKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
+K YDYLL M W+LT E+ ++L + K EL + KK P D + +DLD
Sbjct: 1153 EKGYDYLLAMKIWTLTKEKADKLDDEAKKKNQELEEMLKKKPIDFYKEDLDKF 1205
>gi|10281028|dbj|BAB13755.1| type II DNA topoisomerase [Clavispora lusitaniae]
Length = 772
Score = 511 bits (1316), Expect = e-141, Method: Compositional matrix adjust.
Identities = 283/614 (46%), Positives = 370/614 (60%), Gaps = 114/614 (18%)
Query: 73 MERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVE 132
M ++ + VPGLYKIFDEILVNA DNK RDP M +K+ ++ E+NTI+V N+G+GIPV
Sbjct: 4 MVQKSVKIVPGLYKIFDEILVNAADNKIRDPSMKQLKVNIDVESNTITVRNDGRGIPVEI 63
Query: 133 HKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNG 192
H+ E+M++P MIFG+LLTSSNY+D +E KVTGGRNG
Sbjct: 64 HEKEQMYIPEMIFGNLLTSSNYDD-------------------------DEKKVTGGRNG 98
Query: 193 YGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITFTPDL 251
YGAKLCNIFS++F VET+ K ++QVW +NMSK P+IK +K ++T+ITF PDL
Sbjct: 99 YGAKLCNIFSTEFTVETADLSNGKVYQQVWTNNMSKCNPPKIKKMTAKREYTQITFKPDL 158
Query: 252 TKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD--RQDED 309
KF M LD D+V ++ RR +D + +D VFLN KLP+K+F+ YV +Y RQ +D
Sbjct: 159 AKFGMERLDDDIVSVMKRRVFDLCGTVRDCSVFLNDTKLPIKSFKQYVDMYVQALRQLDD 218
Query: 310 GDPVK---IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIE 366
D K +++EN RWEVA A SD FQQVSFVNSIATT GG HV + D+IVKQ+ E
Sbjct: 219 SDDPKSSVVVHENFGDRWEVAFAVSDGSFQQVSFVNSIATTSGGTHVKMLTDSIVKQLTE 278
Query: 367 VVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFI 426
+ K G K + +KP +VKN++++F+
Sbjct: 279 SISAKR-----------GKK----------------------KALMVKPQEVKNNMFLFV 305
Query: 427 NCLIVNPTFDSQTKENMTLQKGSFGSTCV------------------------------- 455
NCL+ NP F SQTKE MT + FGS V
Sbjct: 306 NCLVENPAFTSQTKEQMTTKPAKFGSKPVITEDFIKKLIAKTSITDKLHSLSQANEDKAL 365
Query: 456 -------------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFP 502
KL DAN AGTK+ CTLILTEGDSA + AV GL VVG + YG FP
Sbjct: 366 ARQDGSRRSRVKSAKLHDANKAGTKDGHKCTLILTEGDSALAQAVVGLKVVGNEYYGCFP 425
Query: 503 LRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQD 562
LRGK+LNVR+A+ QI +NAEIN + KI+GLQ+ K YT E +K+LRYG ++IMTDQD D
Sbjct: 426 LRGKMLNVRDASADQISKNAEINEIKKIIGLQHKKHYTP-ESLKSLRYGHILIMTDQDHD 484
Query: 563 GSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFEEWKE- 617
GSHIKGL+INF ++P LL+ P FL+ FITPI+K T + ++ + FY++P+FE W+E
Sbjct: 485 GSHIKGLLINFFESSFPGLLQCPGFLQGFITPIVKVTILGRHKKVIPFYNMPDFERWRES 544
Query: 618 ETTNWHTYKIKYYK 631
E + + KYYK
Sbjct: 545 EEAQANRWTHKYYK 558
>gi|171683279|ref|XP_001906582.1| hypothetical protein [Podospora anserina S mat+]
gi|170941599|emb|CAP67253.1| unnamed protein product [Podospora anserina S mat+]
Length = 1767
Score = 511 bits (1315), Expect = e-141, Method: Compositional matrix adjust.
Identities = 290/661 (43%), Positives = 375/661 (56%), Gaps = 129/661 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +QLEHI+ RPDTYIGSVE + MW+ N+ ME R +++VPGLYKIFDEILVNA
Sbjct: 125 YQKLTQLEHIIKRPDTYIGSVERTDQKMWVFNKTEKLMENRVVSFVPGLYKIFDEILVNA 184
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DN QRD M +K+T++ ET ISV NNGKGIPV H+ E ++P +IFGHLLT SNY
Sbjct: 185 ADNSQRDASMTFLKVTIDSETGEISVENNGKGIPVEMHQKEGCYIPELIFGHLLTGSNY- 243
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
+D+E K GGRNGYGAKL NIFS KF +E S
Sbjct: 244 ------------------------DDDEKKTVGGRNGYGAKLTNIFSLKFTLECQDSVNG 279
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKM-TSLDKDMVDLITRRAYDA 274
K +KQ W DNMSK+ P+I + +DF ++TF PD +F M +D D+ L+ RR YD
Sbjct: 280 KRYKQTWTDNMSKMEKPKITANKTNDFVRVTFLPDYKRFGMENGIDDDLEALMYRRVYDM 339
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTDR-QDEDGDPV---------KIIYENVNPR- 323
A + VKV+LNGE+L + F+ Y +LY E GD V + YE V +
Sbjct: 340 AGTMASVKVWLNGEQLKIAKFKGYCQLYAKSIAAERGDVVPEGEKPTAANVEYEEVRDKG 399
Query: 324 --WEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
W+V SD FQQVSFVN+IATT GG HV+ + D QI E + K+
Sbjct: 400 RTWQVGFTVSDGSFQQVSFVNNIATTSGGTHVNYIAD----QITEALLKELN-------- 447
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
+ G LKP +N+I+IFINCL+ NP F SQTKE
Sbjct: 448 ------------------------KKKKGHGLKPANFRNYIFIFINCLVDNPAFTSQTKE 483
Query: 442 NMTLQKGSFGSTCV-------------------------------------------PKL 458
+T + +FGS C+ KL
Sbjct: 484 QLTTKVSAFGSKCILSDAFLKKVQKSEVIANIMEFAERKADKMLAKSDGNKRARVSNEKL 543
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
DAN AGTK +CTLILTEGDSA++LAV+G V+ D+ GVFPLRGK+LNVR+A+ +QI
Sbjct: 544 VDANLAGTKRGHECTLILTEGDSARALAVAGRAVLDPDRIGVFPLRGKMLNVRDASTEQI 603
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNW 578
++N EI N+ K LGL++ + YT D + LRYG LMIM DQD DGSHIKGL+INF+ +
Sbjct: 604 MKNKEIENIKKFLGLKHKQVYT---DTRGLRYGHLMIMADQDLDGSHIKGLLINFLEVQF 660
Query: 579 PTLLRLP-FLEEFITPIIK---ATKAREEL---SFYSLPEFEEWKEETTN-WHTYKIKYY 630
P+LLR+P F ++FITP++K T ++ L SF++L E+E WKE N +K KY
Sbjct: 661 PSLLRIPNFFQQFITPVVKVWQGTNPKKPLRPKSFFNLVEYETWKENNKNELRKWKYKYL 720
Query: 631 K 631
K
Sbjct: 721 K 721
Score = 99.8 bits (247), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 75/119 (63%), Gaps = 10/119 (8%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP--------LP 711
IEP+ Y PI+PMVLVNGA+GIGTGW T IPN++P IV+N++R + DP +P
Sbjct: 931 IEPKVYAPILPMVLVNGADGIGTGWSTSIPNYHPMHIVENLRRRMGRFDPDDTEEKPFVP 990
Query: 712 MKPWYKNFKGEIDYCGDSRFVVNGEIAILDD--DKLEITELQVGKWTTDYKDTLDTLLH 768
M PW++ +KG + +++ NG I + +++ +TEL + WT D+K L+ ++
Sbjct: 991 MAPWWRGWKGTPEQEAPNKWRFNGIIRQDEQNPNEIHVTELPIRMWTDDFKAKLEDIIQ 1049
Score = 47.0 bits (110), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
+DYDYLL M WS T ER L + K E + L+ + DLW DLDA +E+
Sbjct: 1218 RDYDYLLSMPVWSFTSERLERLKNQIAAKKAEHDELQALSEKDLWVKDLDAFQEE 1272
>gi|443921924|gb|ELU41451.1| DNA topoisomerase 2 [Rhizoctonia solani AG-1 IA]
Length = 1447
Score = 510 bits (1314), Expect = e-141, Method: Compositional matrix adjust.
Identities = 279/687 (40%), Positives = 382/687 (55%), Gaps = 160/687 (23%)
Query: 4 DESDFD-----PDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEP 58
D+SD D D +G P ++Y+K +QLEHIL RPDTYIGS+E
Sbjct: 95 DDSDDDGAWIVKDDADKDDGSEPSATIQRKDKGASEMYEKLTQLEHILKRPDTYIGSIES 154
Query: 59 ITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNT 118
I++ MW + ET M RE+ +VPGL+KI DEILVNA DNK D M+ IK+ ++ E
Sbjct: 155 ISQKMWTFDEETKRMVFREVKFVPGLFKIVDEILVNAADNKINDASMDTIKVEIDAEEGL 214
Query: 119 ISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSN 178
ISV+NNGKGIP+ H EK+++P MIFGHLLTSSNY
Sbjct: 215 ISVYNNGKGIPIEVHSKEKIWIPEMIFGHLLTSSNY------------------------ 250
Query: 179 YNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSG 237
+D+E K+TGGRNGYGAKL NI+S++F VET+ + ++ +KQ W +NMSK +I K+
Sbjct: 251 -DDDEKKLTGGRNGYGAKLTNIYSTEFTVETADKKTEQKYKQTWMNNMSKPGKAKITKNP 309
Query: 238 SKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQD 297
++FTK++F PD +F M +D D+ L+ RR YD A + K+VKVFLNGE++ +KNF+
Sbjct: 310 RGEEFTKVSFRPDFKRFGMEGMDHDIASLLKRRVYDMAGTVKNVKVFLNGERIKIKNFKQ 369
Query: 298 YVKLYTDRQDE-----DGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRH 352
YV++Y + E +G +I+E ++PRWEV A SD FQQ+SF NSIATTKGG H
Sbjct: 370 YVEMYVNSAKENAGEGEGPKPTVIFEEISPRWEVGFALSDGSFQQISFANSIATTKGGTH 429
Query: 353 VDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMA 412
V+ + + I K +I ++KKNK G
Sbjct: 430 VNMIAEQISKNLIAGIEKKNK------------------------------------GAK 453
Query: 413 LKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS-------------------- 452
+KP +KNH+WIF+N LI NPTFDSQTKE +TL FGS
Sbjct: 454 VKPQTIKNHMWIFVNSLIENPTFDSQTKEWLTLPSSKFGSRPHVSEDFMKRVSTTVAKSG 513
Query: 453 ----------------------------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKS 484
T + KL DAN+AG +++ +CTLILTEGDSAKS
Sbjct: 514 IIDNVLSWAKFKADQENKKTDGTKRTRLTGIAKLSDANNAGGRHASECTLILTEGDSAKS 573
Query: 485 LAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVED 544
LA +GL V GR+ +G+FPLRGKLLNVREATH Q+++NAEI + +I+GL++ Y +D
Sbjct: 574 LAEAGLSVAGRNNFGIFPLRGKLLNVREATHDQVMKNAEIQAIKQIMGLKHGVAY---KD 630
Query: 545 MKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREEL 604
+ +LRYG +MIMTDQ TK +++
Sbjct: 631 VGSLRYGSIMIMTDQ-------------------------------------VTKGNQKI 653
Query: 605 SFYSLPEFEEWKEETTNWHTYKIKYYK 631
+F+++PEF++W EE + +KYYK
Sbjct: 654 NFFTIPEFQKWNEENNKDGKWYVKYYK 680
Score = 135 bits (339), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 82/113 (72%), Gaps = 1/113 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+PI+P++L+NGA+GIGTGW T IPN+NPR+IVDNIKR++ GE +PM PWY+ F
Sbjct: 896 IEPEWYMPILPVILINGADGIGTGWSTSIPNYNPRDIVDNIKRLMNGEPQVPMFPWYRGF 955
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KG I+ G+ ++ V+G I ++I EL + WT YK+ L+ L G +K
Sbjct: 956 KGNIEKIGEDKYKVSG-IVERTAKGVDIKELPIRVWTQSYKEQLEEWLVGTQK 1007
>gi|190350975|dbj|BAB13754.2| type II DNA topoisomerase [Pichia guilliermondii]
Length = 782
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 285/627 (45%), Positives = 372/627 (59%), Gaps = 124/627 (19%)
Query: 70 TNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIP 129
T M +E+ VPGLYKIFDEILVNA DNK RDP M IK+ ++ E NTISV N+GKGIP
Sbjct: 1 TESMIYKEVHIVPGLYKIFDEILVNAADNKIRDPSMRNIKVNIDAENNTISVMNDGKGIP 60
Query: 130 VVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGG 189
+ HK EK+++P +IF G+LLTSSNY+D+E KVTGG
Sbjct: 61 IEIHKKEKIYIPELIF-------------------------GNLLTSSNYDDDEKKVTGG 95
Query: 190 RNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFT 248
RNGYGAKLCNIFS++FV+ET+ + +KQ W +NM+ +T P+I K SK ++TK+TF
Sbjct: 96 RNGYGAKLCNIFSTEFVLETADLNTSQVYKQTWTNNMANLTKPKITKLKSKKEYTKVTFK 155
Query: 249 PDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR-QD 307
PDL+KF M LD D++ ++ RR YD + KD ++LN +KL ++NF+ YV++Y + ++
Sbjct: 156 PDLSKFHMEMLDDDILSVLRRRVYDLCGTVKDCNIYLNDKKLSIRNFKSYVEMYVNAIRE 215
Query: 308 EDGDPVK----------IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVV 357
DPV I++E N RWEVA A SD F QVSFVNSIATT GG HV V
Sbjct: 216 RSPDPVAPEGETRNYSTIVHEVFNDRWEVAFAVSDGSFNQVSFVNSIATTSGGTHVKYVS 275
Query: 358 DAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQ 417
D I+ ++I+ L + +KP +
Sbjct: 276 DQIITKLID---------------------------------ALTKKEKGKKKLNIKPQE 302
Query: 418 VKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS------------------------- 452
V+N++++FINCLI NP F SQTKE +T + FG
Sbjct: 303 VRNNMFVFINCLIENPAFTSQTKEQLTTRVAQFGGKPSEKIVISDQFIAKILKTSIADKI 362
Query: 453 -TCV----------------------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSG 489
T V KL DAN AGTK CTLILTEGDSA LAV+G
Sbjct: 363 RTIVNANEDKEMSKADGSRKSRIKNQVKLVDANKAGTKEGYKCTLILTEGDSAMPLAVAG 422
Query: 490 LGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLR 549
L VVGRD YG FPLRGKLLNVREA+ +Q+ +NAEIN++ +I+GLQ+ K+YT E++K+LR
Sbjct: 423 LTVVGRDYYGCFPLRGKLLNVREASIEQVSKNAEINSIKQIMGLQHKKRYTP-ENIKSLR 481
Query: 550 YGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKA----REEL 604
YG +MIMTDQDQDGSHIKGLIINF+ ++P LL +P FL EFITPI+K T +
Sbjct: 482 YGHIMIMTDQDQDGSHIKGLIINFLETSFPGLLEIPGFLLEFITPIVKVTITGRGNHRVI 541
Query: 605 SFYSLPEFEEWKEETTNWHTYKIKYYK 631
FY++PEFE+W+E +K KY+K
Sbjct: 542 PFYNMPEFEKWRETEGTTCKWKHKYFK 568
>gi|330793204|ref|XP_003284675.1| hypothetical protein DICPUDRAFT_28071 [Dictyostelium purpureum]
gi|325085373|gb|EGC38781.1| hypothetical protein DICPUDRAFT_28071 [Dictyostelium purpureum]
Length = 1260
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 291/695 (41%), Positives = 395/695 (56%), Gaps = 158/695 (22%)
Query: 32 VEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLM-----NRETNHMERR---------- 76
+E+IYQKK+ EH+LLRPD+YIG++E I + MW++ N++T +E++
Sbjct: 82 IEEIYQKKTPTEHVLLRPDSYIGTIEKIEDDMWVLSNSMFNKKTKTVEKKNAQVSETDNQ 141
Query: 77 ---------------EITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISV 121
+ TYVPGL KI+DEILVNA DNK+RD M+ IK+ +N TIS+
Sbjct: 142 SSDKSSKNKTFIQPIKATYVPGLLKIYDEILVNAADNKKRDSTMSFIKVEINPNKGTISI 201
Query: 122 WNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYND 181
N+GKGIP+V H E +V M+ G+L++ SN+ ND
Sbjct: 202 MNDGKGIPIVMHSTENCYVVEMVMGNLMSGSNF-------------------------ND 236
Query: 182 EEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSP---EIKSGS 238
E KV GGRNG+GAKL NIFS +FVVET K + Q W +NMS P IK G
Sbjct: 237 NELKVVGGRNGFGAKLTNIFSKEFVVETIDKSSGKKYYQKWSNNMSNREDPIITNIKEGE 296
Query: 239 KDDFTKITFTPDLTKFKMTSL-DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQD 297
+ D+TKITFTPDL KFK SL D D++ L+ +R YD A +V V+LNG +L +F+
Sbjct: 297 Q-DYTKITFTPDLEKFKTNSLWDDDILQLMEKRLYDIAGCNPEVNVYLNGVQLNY-DFEK 354
Query: 298 YVKLYTDR-----QDEDGDPV----KIIYENVNPRWEVAIAPSDRG-FQQVSFVNSIATT 347
YVKLY + ED + + I+ +++ RW++ + S+ G F QVSFVNSI T
Sbjct: 355 YVKLYEHHLSGSAKKEDSEELYKEESFIFGDIDERWKIGVGLSETGQFTQVSFVNSINTI 414
Query: 348 KGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVR 407
KGG HV+ + + IV+ I + +KKK+ DL
Sbjct: 415 KGGTHVNYIAEQIVRYIADKMKKKHNDL-------------------------------- 442
Query: 408 LGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGST-------------- 453
++P +K+H+ +F+NCLI NP+FDSQ+KE +T + FGS
Sbjct: 443 ----EVRPINIKHHLALFVNCLIDNPSFDSQSKETLTTKSQLFGSNPEIPESILAAFVKN 498
Query: 454 ----------------------------------CVPKLEDANDAGTKNSIDCTLILTEG 479
+ KLEDAN AG + S CTLI+TEG
Sbjct: 499 SKIIERVAGWVLMKQKADLVHQSSTRQSKTALIKSIQKLEDANWAGGQKSNQCTLIVTEG 558
Query: 480 DSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKY 539
DSAKSLA++GL V+GR+ YGVFPLRGKLLNV + KQ+L N EINNL ILGL + K Y
Sbjct: 559 DSAKSLALAGLSVIGRNTYGVFPLRGKLLNVCDVKPKQLLNNEEINNLTNILGLSHKKTY 618
Query: 540 TTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATK 599
T E++K LRYG++MIM DQD DGSHIKGL+INFIHH WP LL++ F+EEFITPIIK +K
Sbjct: 619 ETEEELKELRYGKIMIMADQDHDGSHIKGLVINFIHHFWPNLLKIGFIEEFITPIIKVSK 678
Query: 600 AR-EELSFYSLPEFEEWKEETT--NWHTYKIKYYK 631
+ ++ SFY++ ++++W+E + Y IKYYK
Sbjct: 679 SSTQKRSFYTIKDYQKWREGLSKDQIKQYTIKYYK 713
Score = 98.2 bits (243), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 77/119 (64%), Gaps = 10/119 (8%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMK---PWY 716
I+P++Y+PIIPMVLVNG+EGIG G T IP +P ++++ I + R ++ P+K PWY
Sbjct: 922 IQPDYYVPIIPMVLVNGSEGIGVGMATTIPLFSPIDLIEQI--ICRLDNVPPLKKIIPWY 979
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDEV 775
+ FKG I S + NG I D L I+EL +GKWT+DYKD L+ L+ EKD +
Sbjct: 980 RGFKGTIQPNLKS-YKTNGVIK-FDGKGLVISELPIGKWTSDYKDVLNDLI---EKDVI 1033
>gi|221487518|gb|EEE25750.1| DNA topoisomerase II, putative [Toxoplasma gondii GT1]
Length = 1688
Score = 508 bits (1309), Expect = e-140, Method: Compositional matrix adjust.
Identities = 312/746 (41%), Positives = 398/746 (53%), Gaps = 153/746 (20%)
Query: 1 MSSDESDFDPDVQQNGNGPSPKKKTP--------ANKMSVEKIYQKKSQLEHILLRPDTY 52
MSS E D + Q + SP + P ++E+ YQKKSQLEHILLRPDTY
Sbjct: 1 MSSSE---DEEFQNSSPSLSPARSRPEKGKKSGGGKPKTIEQRYQKKSQLEHILLRPDTY 57
Query: 53 IGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDP--------- 103
IGS E T+ +W+M M + I YVPGLYKI DEILVNA D K R+
Sbjct: 58 IGSTEVHTQALWVMEEGQETMVYKTINYVPGLYKIVDEILVNAADVKAREGEEQKGKPLK 117
Query: 104 ----KMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEED 159
+M+ IKI +N+ + IS+WN+G+GIPV H++ K++VP MI
Sbjct: 118 PGARRMSAIKIDINKASGRISIWNDGEGIPVAIHQEHKVYVPEMI--------------- 162
Query: 160 KVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFK 219
FG LLTS NY+D E +VTGGRNGYGAKL NIFS +F VE + E KK FK
Sbjct: 163 ----------FGQLLTSDNYDDSECRVTGGRNGYGAKLTNIFSREFTVECADGERKKKFK 212
Query: 220 QVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTK 279
W NM + + EI S + D+ KI+F PD KF MT D D + L+ +RAYD A T
Sbjct: 213 MTWTKNMEQKSESEISSYNGTDYVKISFIPDFAKFGMTGFDDDSLSLLRKRAYDLAG-TS 271
Query: 280 DVKVFLNGEKLPVKNFQDYVKLYT---------------DRQDEDGDP------------ 312
VKVFLNG ++ + +F YV LY D D+D D
Sbjct: 272 GVKVFLNGTRIDINSFSQYVDLYLGGRKSEKPSKEKEEFDESDDDWDEGPKRKKAAKKNG 331
Query: 313 ----------------VKII-YENVNPRWEVAIAPSDRG-FQQVSFVNSIATTKGGRHVD 354
K+I + RWEV I+ +D G FQQVSFVNSI TTKGG HV
Sbjct: 332 KKGELEDEEDVANGVEKKVIKIHDKQWRWEVVISSTDGGQFQQVSFVNSICTTKGGTHVS 391
Query: 355 AVVDAIVKQIIEVVKKKNKD----------------LGCTII----------------ML 382
V++ ++ I++ KNK + C I+
Sbjct: 392 HVIEPLLAAIVKKANTKNKGGMEIKAAHVKQHLWIFVSCLIVNPAFDSQTKETLTTKPAK 451
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINC-------------- 428
FG+K Q+ K+ I V L K V+ ++C
Sbjct: 452 FGSKCTLADKTIGQVVKSSIVENVVLWAQT-KQQSVRAFSLSLLDCWRRGALSVDRPVFR 510
Query: 429 LIVNPTFDSQTKENMTLQKGSFGSTCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVS 488
L V Q K T KG +PKLEDANDAG ++S DCTLILTEGDSAK+ ++
Sbjct: 511 LFVFVELRKQMKVGKT--KGRERLAGIPKLEDANDAGGRHSQDCTLILTEGDSAKTSCLA 568
Query: 489 GLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTL 548
GL VVGRD+YGVFPLRGKLLNVR+A+ KQ+ EN EI N++KI+GLQ + + ED + L
Sbjct: 569 GLSVVGRDRYGVFPLRGKLLNVRDASFKQLTENKEIQNILKIVGLQVNDR---TEDTRGL 625
Query: 549 RYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL-PFLEEFITPIIKATKAREELSFY 607
RYG +MIMTDQD DGSHIKGL+IN +HH WP LL+ FL+ F TPI+K +K E +FY
Sbjct: 626 RYGSVMIMTDQDHDGSHIKGLLINMMHHYWPQLLKCRGFLKAFSTPIVKVSKNNVEKAFY 685
Query: 608 SLPEFEEWKEE--TTNWHTYKIKYYK 631
++PE+E+WK TT W KIKYYK
Sbjct: 686 TIPEYEQWKRSCNTTGW---KIKYYK 708
Score = 122 bits (307), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEP+ Y+P+IP VL+NG+EGIGTGW + +PN+NPR++++N++R I GE+ M PWY+
Sbjct: 917 RIEPKMYVPVIPTVLINGSEGIGTGWSSFVPNYNPRDVIENLRRYIDGEEMQRMTPWYRG 976
Query: 719 FKGEI-DYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F+G I + + F G + +D EITEL + +WT DYK+ L+ L AEK
Sbjct: 977 FRGRIEENAAGTGFETIGLVRRCGEDSYEITELPIKRWTQDYKEWLEENLPTAEK 1031
Score = 50.1 bits (118), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
K YDYLLGM WSLT+E+ +L + K EL L+ + LW DLDAL
Sbjct: 1210 KHYDYLLGMPMWSLTLEKVEDLRGEMRQKELELEELRHTSVQTLWKRDLDAL 1261
>gi|145522376|ref|XP_001447032.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124414532|emb|CAK79635.1| unnamed protein product [Paramecium tetraurelia]
Length = 1272
Score = 508 bits (1309), Expect = e-140, Method: Compositional matrix adjust.
Identities = 286/656 (43%), Positives = 390/656 (59%), Gaps = 129/656 (19%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E+ Y+K + +EHIL RPDTYIGS++ +E MW++ + M ++EI YVPG +KIFDE
Sbjct: 5 TIEEQYKKMTHIEHILQRPDTYIGSIQRTSEQMWII--QNGKMIQKEIEYVPGFFKIFDE 62
Query: 91 ILVNACDNKQRDP---KMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGH 147
ILVNA DN QRD K + IK+ + N IS+ N+G IPV HK+ +++VP +IF
Sbjct: 63 ILVNAADNLQRDSRQHKQSYIKVDIG---NEISIKNDGFPIPVEIHKEYQIYVPELIF-- 117
Query: 148 LLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVV 207
G LT SN++D E +V GGRNGYGAKL N++S++F +
Sbjct: 118 -----------------------GVFLTGSNFDDTEKRVVGGRNGYGAKLTNVYSTEFTL 154
Query: 208 ETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLI 267
E C + K FK VW +NMS P IK KD + I++ PD +F M ++ D L+
Sbjct: 155 EV-C-DGKSYFKLVWNNNMSNKQIPIIKQIKKDPYVSISYKPDYKRFGMKEIESDTQALL 212
Query: 268 TRRAYDAAASTKD-VKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVN-PRWE 325
TRR YD A + + V+LN EK+ + +FQ YV LY + +KI +++ PRWE
Sbjct: 213 TRRVYDLAGIYGNKISVYLNDEKIKINSFQKYVDLYLPNEG----AIKIFDKDMTTPRWE 268
Query: 326 VAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
V ++ S FQ VSFVN+I T KGG HV+ V D I+++I N
Sbjct: 269 VVVSYSPTQFQHVSFVNAIYTAKGGTHVNYVTDKIIQEI-------------------QN 309
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTL 445
+ NN K K + ++ +Q+K +W+FINCLI NPTFDSQTKENMT
Sbjct: 310 EMNNNKKYK---------------SIEVQKYQIKQSLWVFINCLIDNPTFDSQTKENMTT 354
Query: 446 QKGSFGST-------------------------------------------------CVP 456
+ FG T +
Sbjct: 355 KVSEFGGTNEEKFKVTEKFSKALIKTDIIETIFQQAKAKADAKLNKQLKGTKTGRLHGIE 414
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG KNS CTLILTEGDSAK+LA++G+ +VGRD+YGVFPL+GKLLNVREA+ K
Sbjct: 415 KLDDANDAGKKNSELCTLILTEGDSAKALAMAGIDIVGRDRYGVFPLKGKLLNVREASLK 474
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QIL+N EI NL+KI+GLQ ++YT D+K+LRYG +MIMTDQD DGSHIKGLIINFIHH
Sbjct: 475 QILQNEEIENLIKIIGLQKERQYT---DLKSLRYGSVMIMTDQDIDGSHIKGLIINFIHH 531
Query: 577 NWPTLLRL-PFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
WP+L++ FL+EF+TP+IKATK + + F+++ +F ++ +E + T+KIKYYK
Sbjct: 532 FWPSLVKYRGFLKEFVTPLIKATKGNQTIPFFTVQDFNKFAQE-EDIKTWKIKYYK 586
Score = 108 bits (271), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPE+Y+PIIPM LVNGAEGIGTGW T I N+NP ++V IK + GE PM P+Y+NF
Sbjct: 796 VEPEYYVPIIPMSLVNGAEGIGTGWSTSIQNYNPIDLVQQIKNRLNGEQFQPMAPFYRNF 855
Query: 720 KGEIDYCGDSRFVVNGEIAILD-DDKLEITELQVGKWTTDYKDTLD 764
G I+ + V+ G I + D + I EL + KWT +YK+ LD
Sbjct: 856 DGIIENLPNGNCVIKGLIDCNEATDIVTIRELPIKKWTRNYKEWLD 901
>gi|66814704|ref|XP_641531.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
gi|166210410|sp|P90520.2|TOP2M_DICDI RecName: Full=DNA topoisomerase 2, mitochondrial; Short=DNA
topoisomerase II; Flags: Precursor
gi|60469558|gb|EAL67548.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
Length = 1284
Score = 508 bits (1308), Expect = e-140, Method: Compositional matrix adjust.
Identities = 291/698 (41%), Positives = 392/698 (56%), Gaps = 160/698 (22%)
Query: 32 VEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREI------------- 78
+E IYQKK+ EH+LLRPD+YIG++E I + MW+++ + E++ I
Sbjct: 87 IEDIYQKKTPTEHVLLRPDSYIGTIEKIEDDMWVLSNSMFNKEKKTIELNNDNNEKNVES 146
Query: 79 ---------------------TYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN 117
TY+PGL KI+DEILVNA DNK+RD KM+ IK+ +N N
Sbjct: 147 TTTTTTKTNKKPLTYIHPIKATYIPGLLKIYDEILVNAADNKKRDSKMSFIKVEINPNEN 206
Query: 118 TISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSS 177
+IS+ N+GKGIPVV H+ E +V M+ G+L++ SN+
Sbjct: 207 SISIMNDGKGIPVVMHQTENCYVVEMVMGNLMSGSNF----------------------- 243
Query: 178 NYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIK-- 235
ND E KV GGRNG+GAKL NIFS +F VET K + Q W +NM + P I
Sbjct: 244 --NDSELKVVGGRNGFGAKLTNIFSKEFTVETVDKSSGKKYFQRWSNNMGDRSEPIITPI 301
Query: 236 SGSKDDFTKITFTPDLTKFKMTSL-DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKN 294
+ D+TKITF PDL KFK+ SL D +++ L+ RR YD A ++ V LNG++L N
Sbjct: 302 GEGESDYTKITFKPDLEKFKIKSLWDDNILQLMERRLYDIAGCNTELMVTLNGKRLNY-N 360
Query: 295 FQDYVKLY-------TDRQDEDGDPVKIIYE--NVNPRWEVAIAPSDRG-FQQVSFVNSI 344
FQ YVKLY T R+D + + +E ++PRW++ I S+ G F QVSFVNSI
Sbjct: 361 FQSYVKLYEHHLNNSTKREDNEEQYREESFEFGEISPRWKIGIGLSETGQFTQVSFVNSI 420
Query: 345 ATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDI 404
T KGG HV+ + D IV+ + E +KKK+ DL
Sbjct: 421 NTVKGGTHVNFLADQIVRYVGEKLKKKHSDL----------------------------- 451
Query: 405 GVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGST----------- 453
++P +K+H+ +F+NCL+ NP+FDSQ+KE +T + FGST
Sbjct: 452 -------EIRPMNIKHHLALFVNCLVDNPSFDSQSKETLTTKPMLFGSTPEIPESLLAQF 504
Query: 454 -------------------------------------CVPKLEDANDAGTKNSIDCTLIL 476
+ KL+DAN AG S +CTLI+
Sbjct: 505 VKNSKIIERVAGWALMKQKADLIHSTSGRQSKTTLIKSISKLDDANWAGGLKSKECTLII 564
Query: 477 TEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYS 536
TEGDSAKSLA++GL VVGR+ YGVFPLRGKLLNVR+ KQ+L N EINNL ILGL +
Sbjct: 565 TEGDSAKSLALAGLSVVGRNSYGVFPLRGKLLNVRDVASKQLLSNEEINNLTTILGLSHK 624
Query: 537 KKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIK 596
Y T E M+ LRYGR+MIM DQD DGSHIKGL++NFIH+ WP LL+ FL EF+TPIIK
Sbjct: 625 NSYDTDESMEDLRYGRVMIMADQDHDGSHIKGLVMNFIHYFWPNLLKRGFLVEFVTPIIK 684
Query: 597 ATKAR-EELSFYSLPEFEEWKEETTN--WHTYKIKYYK 631
ATK+ ++ SF+++ ++E+W+E ++ Y IKYYK
Sbjct: 685 ATKSSTQKKSFFTIKDYEKWRETISSDQLKQYTIKYYK 722
Score = 100 bits (249), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 75/111 (67%), Gaps = 7/111 (6%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMK---PWY 716
I+P++YIPIIPM+LVNG+EGIG G T IP +P +I+D + M+R + + +K PWY
Sbjct: 931 IQPDYYIPIIPMLLVNGSEGIGVGMSTSIPLFSPIDIIDQL--MLRLNNQVALKKLIPWY 988
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
+ FKG I + NG I ++ + LEITEL +G+WT+DYK+ L+ L+
Sbjct: 989 RGFKGTIS-PDRHTYRTNGVIKLVGRN-LEITELPIGRWTSDYKEVLNDLI 1037
>gi|154340639|ref|XP_001566276.1| DNA topoisomerase ii [Leishmania braziliensis MHOM/BR/75/M2904]
gi|134063595|emb|CAM39778.1| DNA topoisomerase ii [Leishmania braziliensis MHOM/BR/75/M2904]
Length = 1501
Score = 508 bits (1308), Expect = e-140, Method: Compositional matrix adjust.
Identities = 285/661 (43%), Positives = 379/661 (57%), Gaps = 122/661 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+VE+IYQKK+Q EHIL RPD YIG++EP+T+ +W+ + N M++R+ T+ PGLYKIFDE
Sbjct: 4 TVEQIYQKKTQHEHILTRPDMYIGTIEPVTDDIWVYDDAENIMKQRKCTWTPGLYKIFDE 63
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNK RDP + I V + + V+NNG+GIP+ H++ ++VP MIF
Sbjct: 64 ILVNAADNKVRDPLGQTV-IRVWMTEDYVRVYNNGEGIPIQRHREHDLWVPEMIF----- 117
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
GHLLTSSNY+DEE KVTGGRNG+GAKL N+FS +F VET
Sbjct: 118 --------------------GHLLTSSNYDDEEAKVTGGRNGFGAKLTNVFSKQFEVETV 157
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
S +K F W +NM + P I D+T +TF PD +F + +D++ ++ RR
Sbjct: 158 HSRSRKKFYMKWTNNMLQHDDPIIVPCESADYTMVTFYPDFARFHVDKFSEDILLMMKRR 217
Query: 271 AYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIA 329
YD A T K +K FLN E++ F +YV LY +E Y N RWE+ +
Sbjct: 218 VYDVAGCTDKTLKCFLNDERIACTTFPEYVDLYPTMGEERK---AASYSRANDRWELCVR 274
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
S+ G QQVSFVNSIATT+GG HV ++D IV +++E KKK K
Sbjct: 275 VSNIGPQQVSFVNSIATTRGGTHVKYIMDQIVTKVVEQAKKKKK---------------- 318
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
+K ++ HI++F+NCLI NP+FDSQTKE + K
Sbjct: 319 ---------------------TDVKSHMIRPHIFLFVNCLIDNPSFDSQTKETLNTVKSK 357
Query: 450 FGSTC---------------------------------------------VPKLEDANDA 464
FGSTC +PKL+DAN+A
Sbjct: 358 FGSTCDLPNSIVDYIMNSGIVERSVEMANSKIAKEMASKIKSSDRKQIMGIPKLDDANEA 417
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
G K+ CTLILTEGDSAK+L +GL V RD +GVFPLRGK LNVREA+ K++ EI
Sbjct: 418 GGKHGHRCTLILTEGDSAKTLCTAGLAVKDRDYFGVFPLRGKPLNVREASLKKLAACEEI 477
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
++KI+GL +KY E+ LRYG LMIM+DQD DGSHIKGL+INFIH WP LLR+
Sbjct: 478 QCVMKIMGLDIRQKY---ENTDGLRYGHLMIMSDQDHDGSHIKGLLINFIHCFWPNLLRV 534
Query: 585 P-FLEEFITPIIKAT-----KAREELSFYSLPEFEEWKEET-TNWHTYKIKYYKVVYVTG 637
P FL++FITPI+KA A + +SF+S+P++ EWK+ N Y+I+YYK + +G
Sbjct: 535 PGFLQQFITPIVKARPKGRGGAGKAISFFSMPDYFEWKKAIGDNLSNYQIRYYKGLGTSG 594
Query: 638 V 638
Sbjct: 595 A 595
Score = 112 bits (279), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 72/107 (67%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP +YIP+IPMVLVNG GIGTG+ T IPN+NP E++ N++R++RGE+ M+PWY F
Sbjct: 802 VEPFYYIPVIPMVLVNGTTGIGTGFSTSIPNYNPLEVIRNLERLMRGEEVHKMQPWYFGF 861
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
G ++ +F+ +G + D + ITEL +G WT YK L+ +
Sbjct: 862 TGTMEEKEPGKFISHGRYEVRPDGVVCITELPIGVWTQTYKKFLEDM 908
Score = 55.8 bits (133), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 830 AAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMER----KNELLKKRDDKMTELNIL 885
AA+G D+ ++T E ++YDYLLGM WSLT E + +L + R D T +
Sbjct: 1083 AADGGVDDGDAETPEVRRATRNYDYLLGMKLWSLTAEMIARLEAQLARARHDTAT----M 1138
Query: 886 KKKAPTDLWSDDLDALREK 904
+ + P D+W +DL LR K
Sbjct: 1139 EARTPKDMWMEDLQVLRTK 1157
>gi|157871926|ref|XP_001684512.1| DNA topoisomerase ii [Leishmania major strain Friedlin]
gi|68127581|emb|CAJ05684.1| DNA topoisomerase ii [Leishmania major strain Friedlin]
Length = 1497
Score = 508 bits (1308), Expect = e-140, Method: Compositional matrix adjust.
Identities = 287/660 (43%), Positives = 379/660 (57%), Gaps = 122/660 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+VE+IYQKK+Q +HIL RPD YIG++EP+T+ +W+ + N M++R+ T+ PGLYKIFDE
Sbjct: 4 TVEQIYQKKTQHDHILTRPDMYIGTLEPVTDDIWVYDDAENSMKQRKCTWTPGLYKIFDE 63
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNK RDP + I V + + V+NNG+GIP+ +H++ ++VP MIF
Sbjct: 64 ILVNAADNKVRDPIGQTV-IRVWMTESYVRVYNNGEGIPIQKHREHDLWVPEMIF----- 117
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
GHLLTSSNY+DEE KVTGGRNG+GAKL N+FS +F VET
Sbjct: 118 --------------------GHLLTSSNYDDEEAKVTGGRNGFGAKLTNVFSKQFEVETV 157
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
S +K F W +NM + P I D+T +TF PD F + +DM+ ++ RR
Sbjct: 158 HSRSRKKFYMKWTNNMLQHDDPVIVPCDSADYTMVTFYPDFALFHVDKFTEDMLLMMKRR 217
Query: 271 AYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIA 329
YD A T K +K FLN E++ F +YV LY +E Y VN RWEV +
Sbjct: 218 VYDIAGCTDKTLKCFLNDERIACTTFPEYVDLYPTMGEERK---AASYSRVNDRWEVCVR 274
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
S+ G QQVSFVNSIATT+GG HV ++D I +++E KKK K
Sbjct: 275 VSNIGPQQVSFVNSIATTRGGTHVKYIMDQITSKVMEQAKKKKK---------------- 318
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
+KP ++ HI++F+NCLI NP FDSQTKE + K
Sbjct: 319 ---------------------TDVKPHMIRPHIFLFVNCLIENPGFDSQTKETLNTVKSK 357
Query: 450 FGSTC---------------------------------------------VPKLEDANDA 464
FGSTC +PKL+DAN+A
Sbjct: 358 FGSTCDLPNSIVDYIMSSGIVERSVEMANSKIAREMASKMRSSDRKQIMGIPKLDDANEA 417
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
G K+S CTLILTEGDSAK+L +GL V RD +GVFPLRGK LNVREA+ K++ EI
Sbjct: 418 GGKHSHRCTLILTEGDSAKTLCTAGLAVKDRDYFGVFPLRGKPLNVREASLKKLAACEEI 477
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
++KI+GL + Y E+ LRYG LMIM+DQD DGSHIKGL+INFIH WP LLR+
Sbjct: 478 QCVMKIMGLDIRQTY---ENSDGLRYGHLMIMSDQDHDGSHIKGLLINFIHCFWPNLLRV 534
Query: 585 P-FLEEFITPIIKAT-----KAREELSFYSLPEFEEWKEET-TNWHTYKIKYYKVVYVTG 637
P FL++FITPI+KA A + +SF+S+P++ EWK+ N Y+I+YYK + +G
Sbjct: 535 PGFLQQFITPIVKARPKGRGGAGKAISFFSMPDYFEWKKAIGDNLSNYQIRYYKGLGTSG 594
Score = 113 bits (282), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 72/107 (67%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP +YIP+IPMVLVNG GIGTG+ T IPN+NP EI+ N++R++RGE+ M+PWY F
Sbjct: 802 VEPFFYIPVIPMVLVNGTTGIGTGFSTSIPNYNPLEIISNLERLMRGEEVHKMQPWYFGF 861
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
G ++ +F+ +G I D + ITEL +G WT YK L+ +
Sbjct: 862 TGTMEEKEPGKFISHGRYEIRPDGVVCITELPIGVWTQAYKKFLEDM 908
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%)
Query: 830 AAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKA 889
AA+ D+ ++ E +DYDYLLGM WSLT E L + + ++ +
Sbjct: 1083 AADSGADDGAAEPPEMRRATRDYDYLLGMKLWSLTAEMIARLEAQMARARRDTAAMEART 1142
Query: 890 PTDLWSDDLDALREK 904
P D+W +DL LR K
Sbjct: 1143 PKDMWMEDLKVLRTK 1157
>gi|75765928|pdb|1ZXM|A Chain A, Human Topo Iia Atpase/amp-pnp
gi|75765929|pdb|1ZXM|B Chain B, Human Topo Iia Atpase/amp-pnp
gi|75765930|pdb|1ZXN|A Chain A, Human Dna Topoisomerase Iia AtpaseADP
gi|75765931|pdb|1ZXN|B Chain B, Human Dna Topoisomerase Iia AtpaseADP
gi|75765932|pdb|1ZXN|C Chain C, Human Dna Topoisomerase Iia AtpaseADP
gi|75765933|pdb|1ZXN|D Chain D, Human Dna Topoisomerase Iia AtpaseADP
Length = 400
Score = 508 bits (1307), Expect = e-140, Method: Compositional matrix adjust.
Identities = 256/446 (57%), Positives = 311/446 (69%), Gaps = 67/446 (15%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIFDE
Sbjct: 1 SVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIFDE 59
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 60 ILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIF----- 114
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VET+
Sbjct: 115 --------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETA 154
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
EYKK FKQ W DNM + E+K + +D+T ITF PDL+KFKM SLDKD+V L+ RR
Sbjct: 155 SREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRR 214
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIA 329
AYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE G+ +K+I+E VN RWEV +
Sbjct: 215 AYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVCLT 274
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 275 MSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNK---------------- 318
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ S
Sbjct: 319 -------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPKS 359
Query: 450 FGSTCVPKLEDANDAGTKNSIDCTLI 475
FGSTC ++ K +I C ++
Sbjct: 360 FGSTC-----QLSEKFIKAAIGCGIV 380
>gi|357463091|ref|XP_003601827.1| DNA topoisomerase [Medicago truncatula]
gi|355490875|gb|AES72078.1| DNA topoisomerase [Medicago truncatula]
Length = 1345
Score = 507 bits (1305), Expect = e-140, Method: Compositional matrix adjust.
Identities = 285/641 (44%), Positives = 374/641 (58%), Gaps = 123/641 (19%)
Query: 41 QLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQ 100
+LEHILL PDTYIGS E T+ +W+ E M R ++YVPGLYKIFDEIL++A +
Sbjct: 12 ELEHILLHPDTYIGSTEKHTQNLWVY--ENEEMVHRSVSYVPGLYKIFDEILLDAT---K 66
Query: 101 RDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDK 160
RDP M+ +K+T+ E NT+SV+NNG+G+PV HK+E ++VP + FGHL
Sbjct: 67 RDPSMDSLKVTIEPEGNTVSVYNNGEGVPVGLHKEENVYVPELFFGHL------------ 114
Query: 161 VTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQ 220
NY+ K TGGRNGYGAKL NIFS +FV+E K +KQ
Sbjct: 115 -----------------NYDYNVKKTTGGRNGYGAKLTNIFSKEFVIEIVDGRRLKKYKQ 157
Query: 221 VWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAST- 278
V+ +NM + P I + + +++TK+TF PDL KFKMT L++D+V L+ +R D A
Sbjct: 158 VFSNNMGTKSEPVITECNASENWTKVTFKPDLEKFKMTYLEEDLVALMKKRVLDMAGCLG 217
Query: 279 KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDG-DPVKIIYENVNPRWEVAIAPSDRGFQQ 337
K VKV LNG + +F+DYV L+ ++ P+ I+ V RWE+ ++ SD FQQ
Sbjct: 218 KTVKVELNGTLICFMSFRDYVDLFLKCAEKSKPAPLPRIHAIVGDRWEICVSLSDGQFQQ 277
Query: 338 VSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQM 397
VSFVNSIAT KGG HVD + + I+ ++ V KK KD
Sbjct: 278 VSFVNSIATIKGGTHVDYITNQIIAHVMYKVNKKKKDAN--------------------- 316
Query: 398 AKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC--- 454
+K VKNH+W+F+N LI NP FDSQTKE + + SFGS C
Sbjct: 317 ---------------VKAHTVKNHLWVFVNALINNPAFDSQTKETLMTSQPSFGSYCDVP 361
Query: 455 -----------------------------------------VPKLEDANDAGTKNSIDCT 473
+ +LEDANDAG +NS CT
Sbjct: 362 ESMLKDVEKSGIMDTLLSWADFNESKDFKTTDGRKIQRIRGIVRLEDANDAGGRNSEKCT 421
Query: 474 LILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGL 533
LILT+GDSAK+LA++GL VVGRD YGVFPLR KLLNVR A+ KQI +N E + KILGL
Sbjct: 422 LILTDGDSAKALAMAGLSVVGRDHYGVFPLRDKLLNVRVASKKQITDNQEFQIIQKILGL 481
Query: 534 QYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFIT 592
Q +K YT V K+LRYG LMIM DQD DGSHIKGL+INFIH WP+LL++P F+ EF T
Sbjct: 482 QQNKDYTNV---KSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPSLLKVPSFIVEFTT 538
Query: 593 PIIKATKAR-EELSFYSLPEFEEWKEET-TNWHTYKIKYYK 631
PII+ + + +LSFYS+ ++E W++ N + +KIKYYK
Sbjct: 539 PIIRVSHSNGTKLSFYSMSDYEVWRKRIGNNANCWKIKYYK 579
Score = 132 bits (332), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WYIPIIP+VLVNG+E IGTGW + IPN+NPREI+ N++R++ E+ +PM PWY+ F
Sbjct: 760 IEPNWYIPIIPLVLVNGSEEIGTGWSSYIPNYNPREIIANVRRLLNEEEMVPMDPWYRGF 819
Query: 720 KGEID-YCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGA 770
+G I+ + VNG + +D+ ITEL + KWT DYK L+++ GA
Sbjct: 820 RGTIEKSMKQGGYRVNGSMVKIDEQTFRITELPIRKWTEDYKQFLESITEGA 871
>gi|1834317|dbj|BAA11510.1| DNA topoisomerase II [Dictyostelium discoideum]
Length = 1282
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 290/698 (41%), Positives = 391/698 (56%), Gaps = 161/698 (23%)
Query: 32 VEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREI------------- 78
+E IYQKK+ EH+LLRPD+YIG++E I + MW+++ + E++ I
Sbjct: 87 IEDIYQKKTPTEHVLLRPDSYIGTIEKIEDDMWVLSNSMFNKEKKTIELNNDNNEKNVES 146
Query: 79 ---------------------TYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN 117
TY+PGL KI+DEILVNA DNK+RD KM+ IK+ +N N
Sbjct: 147 TTTTTTKTNKKPLTYIHPIKATYIPGLLKIYDEILVNAADNKKRDSKMSFIKVEINPNEN 206
Query: 118 TISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSS 177
+IS+ N+GKGIPVV H+ E +V M+ G+L++ SN+
Sbjct: 207 SISIMNDGKGIPVVMHQTENCYVVEMVMGNLMSGSNF----------------------- 243
Query: 178 NYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIK-- 235
ND E KV GGRNG+GAKL NIFS +F VET K + Q W +NM + P I
Sbjct: 244 --NDSELKVVGGRNGFGAKLTNIFSKEFTVETVDKSSGKKYFQRWSNNMGDRSEPIITPI 301
Query: 236 SGSKDDFTKITFTPDLTKFKMTSL-DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKN 294
+ D+TKITF PDL KFK+ SL D +++ L+ RR YD A ++ V LNG++L N
Sbjct: 302 GEGESDYTKITFKPDLEKFKIKSLWDDNILQLMERRLYDIAGCNTELMVTLNGKRLNY-N 360
Query: 295 FQDYVKLYTDRQDEDGDPVKII---------YENVNPRWEVAIAPSDRG-FQQVSFVNSI 344
FQ YVKLY + + VKI+ + ++PRW++ I S+ G F QVSFVNSI
Sbjct: 361 FQSYVKLY-EHHLNNSTNVKIMRHIVKNPFEFGEISPRWKIGIGLSETGQFTQVSFVNSI 419
Query: 345 ATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDI 404
T KGG HV+ + D IV+ + E +KKK+ DL
Sbjct: 420 NTVKGGTHVNFLADQIVRYVGEKLKKKHSDL----------------------------- 450
Query: 405 GVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGST----------- 453
++P +K+H+ +F+NCL+ NP+FDSQ+KE +T + FGST
Sbjct: 451 -------EIRPMNIKHHLALFVNCLVDNPSFDSQSKETLTTKPMLFGSTPEIPESLLAQF 503
Query: 454 -------------------------------------CVPKLEDANDAGTKNSIDCTLIL 476
+ KL+DAN AG S +CTLI+
Sbjct: 504 VKNSKIIERVAGWALMKQKADLIHSTSGRQSKTTLIKSISKLDDANWAGGLKSKECTLII 563
Query: 477 TEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYS 536
TEGDSAKSLA++GL VVGR+ YGVFPLRGKLLNVR+ KQ+L N EINNL ILGL +
Sbjct: 564 TEGDSAKSLALAGLSVVGRNSYGVFPLRGKLLNVRDVASKQLLSNEEINNLTTILGLSHK 623
Query: 537 KKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIK 596
Y T E M+ LRYGR+MIM DQD DGSHIKGL++NFIH+ WP LL+ FL EF+TPIIK
Sbjct: 624 NSYDTDESMEDLRYGRVMIMADQDHDGSHIKGLVMNFIHYFWPNLLKRGFLVEFVTPIIK 683
Query: 597 ATKAR-EELSFYSLPEFEEWKEETTN--WHTYKIKYYK 631
ATK+ ++ SF+++ ++E+W+E ++ Y IKYYK
Sbjct: 684 ATKSSTQKKSFFTIKDYEKWRETISSDQLKQYTIKYYK 721
Score = 100 bits (248), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 75/111 (67%), Gaps = 7/111 (6%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMK---PWY 716
I+P++YIPIIPM+LVNG+EGIG G T IP +P +I+D + M+R + + +K PWY
Sbjct: 929 IQPDYYIPIIPMLLVNGSEGIGVGMSTSIPLFSPIDIIDQL--MLRLNNQVALKKLIPWY 986
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
+ FKG I + NG I ++ + LEITEL +G+WT+DYK+ L+ L+
Sbjct: 987 RGFKGTIS-PDRHTYRTNGVIKLVGRN-LEITELPIGRWTSDYKEVLNDLI 1035
>gi|237830295|ref|XP_002364445.1| DNA topoisomerase II, putative [Toxoplasma gondii ME49]
gi|211962109|gb|EEA97304.1| DNA topoisomerase II, putative [Toxoplasma gondii ME49]
gi|221507315|gb|EEE32919.1| DNA topoisomerase II, putative [Toxoplasma gondii VEG]
Length = 1687
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 311/746 (41%), Positives = 398/746 (53%), Gaps = 153/746 (20%)
Query: 1 MSSDESDFDPDVQQNGNGPSPKKKTP--------ANKMSVEKIYQKKSQLEHILLRPDTY 52
MSS E D + Q + SP P ++E+ YQKKSQLEHILLRPDTY
Sbjct: 1 MSSSE---DEEFQNSSPSLSPAHSRPEKGKKSGGGKPKTIEQRYQKKSQLEHILLRPDTY 57
Query: 53 IGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDP--------- 103
IGS E T+ +W+M M + I YVPGLYKI DEILVNA D K R+
Sbjct: 58 IGSTEVHTQALWVMEEGQETMVYKTINYVPGLYKIVDEILVNAADVKAREGEEQKGKPLK 117
Query: 104 ----KMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEED 159
+M+ IKI +N+ + I++WN+G+GIPV H++ K++VP MI
Sbjct: 118 PGARRMSAIKIDINKASGRITIWNDGEGIPVAIHQEHKVYVPEMI--------------- 162
Query: 160 KVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFK 219
FG LLTS NY+D E +VTGGRNGYGAKL NIFS +F VE + E KK FK
Sbjct: 163 ----------FGQLLTSDNYDDSECRVTGGRNGYGAKLTNIFSREFTVECADGERKKKFK 212
Query: 220 QVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTK 279
W NM + + EI S + D+ KI+F PD KF MT D D + L+ +RAYD A T
Sbjct: 213 MTWTKNMEQKSESEISSYNGTDYVKISFIPDFAKFGMTGFDDDSLSLLRKRAYDLAG-TS 271
Query: 280 DVKVFLNGEKLPVKNFQDYVKLYT---------------DRQDEDGDP------------ 312
VKVFLNG ++ + +F YV LY D D+D D
Sbjct: 272 GVKVFLNGTRIDINSFSQYVDLYLGGRKSEKPSKEKEEFDESDDDWDEGPKRKKAAKKNG 331
Query: 313 ----------------VKII-YENVNPRWEVAIAPSDRG-FQQVSFVNSIATTKGGRHVD 354
K+I + RWEV I+ +D G FQQVSFVNSI TTKGG HV
Sbjct: 332 KKGELEDEEDVANGVEKKVIKIHDKQWRWEVVISSTDGGQFQQVSFVNSICTTKGGTHVS 391
Query: 355 AVVDAIVKQIIEVVKKKNKD----------------LGCTII----------------ML 382
V++ ++ I++ KNK + C I+
Sbjct: 392 HVIEPLLAAIVKKANTKNKGGMEIKAAHVKQHLWIFVSCLIVNPAFDSQTKETLTTKPAK 451
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINC-------------- 428
FG+K Q+ K+ I V L K V+ ++C
Sbjct: 452 FGSKCTLADKTIGQVVKSSIVENVVLWAQT-KQQSVRAFSLSLLDCWRLGALSVDRPVFR 510
Query: 429 LIVNPTFDSQTKENMTLQKGSFGSTCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVS 488
L+V Q K T KG +PKLEDANDAG ++S DCTLILTEGDSAK+ ++
Sbjct: 511 LLVFVELRKQMKVGKT--KGRERLAGIPKLEDANDAGGRHSQDCTLILTEGDSAKTSCLA 568
Query: 489 GLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTL 548
GL VVGRD+YGVFPLRGKLLNVR+A+ KQ+ EN EI N++KI+GLQ + + ED + L
Sbjct: 569 GLSVVGRDRYGVFPLRGKLLNVRDASFKQLTENKEIQNILKIVGLQVNDR---TEDTRGL 625
Query: 549 RYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL-PFLEEFITPIIKATKAREELSFY 607
RYG +MIMTDQD DGSHIKGL+IN +HH WP LL+ FL+ F TPI+K +K E +FY
Sbjct: 626 RYGSVMIMTDQDHDGSHIKGLLINMMHHYWPQLLKCRGFLKAFSTPIVKVSKNNVEKAFY 685
Query: 608 SLPEFEEWKEE--TTNWHTYKIKYYK 631
++PE+E+WK TT W KIKYYK
Sbjct: 686 TIPEYEQWKRSCNTTGW---KIKYYK 708
Score = 122 bits (307), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEP+ Y+P+IP VL+NG+EGIGTGW + +PN+NPR++++N++R I GE+ M PWY+
Sbjct: 917 RIEPKMYVPVIPTVLINGSEGIGTGWSSFVPNYNPRDVIENLRRYIDGEEMQRMTPWYRG 976
Query: 719 FKGEI-DYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F+G I + + F G + +D EITEL + +WT DYK+ L+ L AEK
Sbjct: 977 FRGRIEENAAGTGFETIGLVRRCGEDTYEITELPIKRWTQDYKEWLEENLPTAEK 1031
Score = 50.1 bits (118), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
K YDYLLGM WSLT+E+ +L + K EL L+ + LW DLDAL
Sbjct: 1210 KHYDYLLGMPMWSLTLEKVEDLRGEMRQKELELEELRHTSVQTLWKRDLDAL 1261
>gi|145491451|ref|XP_001431725.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398830|emb|CAK64327.1| unnamed protein product [Paramecium tetraurelia]
Length = 1274
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 284/658 (43%), Positives = 388/658 (58%), Gaps = 133/658 (20%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E+ Y+K + +EHIL RPDTYIGS++ +E MW++ + M ++EI YVPG +KIFDE
Sbjct: 5 TIEEQYKKMTHIEHILQRPDTYIGSIQRTSEQMWII--QNGKMIQKEIEYVPGFFKIFDE 62
Query: 91 ILVNACDNKQRDP---KMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGH 147
ILVNA DN QRD K + IK+ + N I++ N+G IPV HK+ +++VP +IF
Sbjct: 63 ILVNAADNLQRDTRQHKQSYIKVDIG---NEITIKNDGLPIPVEIHKEYQIYVPELIF-- 117
Query: 148 LLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVV 207
G LT SN++D E +V GGRNGYGAKL N++S++F +
Sbjct: 118 -----------------------GVFLTGSNFDDSEKRVVGGRNGYGAKLTNVYSTEFTL 154
Query: 208 ETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLI 267
E C + FK VW +NMS P IK KD + I++ PD +F M ++ D L+
Sbjct: 155 EV-C-DGNNYFKLVWNNNMSNKQIPTIKQLKKDPYVSISYKPDYKRFGMKEIEADTQALL 212
Query: 268 TRRAYD-AAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVN-PRWE 325
TRR YD A + V+LN EK+ + +FQ YV LY + +KI +++ PRWE
Sbjct: 213 TRRVYDLAGIYGSKINVYLNDEKIKINSFQKYVDLYLPTEG----AIKIFDKDMTTPRWE 268
Query: 326 VAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
V ++ S FQ VSFVN+I T KGG HV+ V D I+++I N
Sbjct: 269 VVVSYSPTQFQHVSFVNAIYTAKGGTHVNYVTDKIIQEI-------------------QN 309
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTL 445
+ NN K K + ++ +Q+K +W+FINCLI NPTFDSQTKENMT
Sbjct: 310 EMNNNKKYK---------------SIEVQKYQIKQSLWVFINCLIDNPTFDSQTKENMTT 354
Query: 446 QKGSFGSTC-------------------------------------------------VP 456
+ FG + +
Sbjct: 355 KVSEFGGSSEEKFKVTEKFSKALIKTDIIETIFQQAKAKADAKLNKQLKGTKTGRLHGIE 414
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG KNS CTLILTEGDSAK+LA++G+ +VGRD+YGVFPL+GKLLNVREA+ K
Sbjct: 415 KLDDANDAGKKNSELCTLILTEGDSAKALAMAGIDIVGRDRYGVFPLKGKLLNVREASLK 474
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QIL+N EI NL+KI+GLQ ++YT D+K+LRYG +MIMTDQD DGSHIKGLIINFIHH
Sbjct: 475 QILQNEEIENLIKIIGLQKERQYT---DLKSLRYGSVMIMTDQDIDGSHIKGLIINFIHH 531
Query: 577 NWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEW--KEETTNWHTYKIKYYK 631
WP+L++ FL+EF+TP+IKATK + + F+++ +F ++ +E+ NW KIKYYK
Sbjct: 532 FWPSLVKYSGFLKEFVTPLIKATKGNQTIPFFTVQDFNKFAQEEDIKNW---KIKYYK 586
Score = 108 bits (269), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 72/109 (66%), Gaps = 7/109 (6%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPE+Y+PIIPM LVNGAEGIGTGW T I N+NP E+V+ IK + G+ PM P+Y+NF
Sbjct: 796 VEPEYYVPIIPMSLVNGAEGIGTGWSTSIQNYNPIELVNQIKNRLDGQPFQPMTPFYRNF 855
Query: 720 KGEIDYCGDSRFVVNGEIAILD----DDKLEITELQVGKWTTDYKDTLD 764
G I+ + ++ G I+D D + I EL + KWT +YK+ LD
Sbjct: 856 DGIIENLPNGNGIIKG---IIDCNEATDIITIRELPIKKWTRNYKEWLD 901
>gi|10281012|dbj|BAB13747.1| type II DNA topoisomerase [Kluyveromyces marxianus]
Length = 777
Score = 505 bits (1301), Expect = e-139, Method: Compositional matrix adjust.
Identities = 289/629 (45%), Positives = 375/629 (59%), Gaps = 133/629 (21%)
Query: 70 TNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIP 129
T+ M + + VPGL+KIFDEILVNA DNK RDP M I +T+NQE N I V N+GKGIP
Sbjct: 1 TDCMIEKTVNIVPGLFKIFDEILVNAADNKVRDPSMKKIDVTINQEENLIEVRNDGKGIP 60
Query: 130 VVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGG 189
V H+ E +++P MIFGHLLTSSNY+D +E KVTGG
Sbjct: 61 VEIHEKEGIYIPEMIFGHLLTSSNYDD-------------------------DEKKVTGG 95
Query: 190 RNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFT 248
RNGYGAK+CNIFS++F++ET+ + + Q W++NMS P I S + +TK++F
Sbjct: 96 RNGYGAKVCNIFSTEFILETADPSKGQKYVQKWENNMSVCHPPSITSYKRGPSYTKVSFR 155
Query: 249 PDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY------ 302
DL +F M LD D+V ++ RR YD S +DV V LNG+ L +KNF++YV+LY
Sbjct: 156 ADLQRFNMEKLDDDIVGVMRRRVYDINGSVRDVNVSLNGKPLKIKNFKNYVELYLKSLEK 215
Query: 303 --TDRQDEDGDPVK----------IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGG 350
+R E +P + I+YE +N RWE+A A S+ FQQ+SFVNSIATT GG
Sbjct: 216 IKLNRLQELTNPDEPAQEPTNIPAILYEKINDRWEIAFAVSENSFQQISFVNSIATTSGG 275
Query: 351 RHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGG 410
HV+ V D IVK++ + +KK+ K
Sbjct: 276 THVNYVTDQIVKKVSDRLKKQKK------------------------------------- 298
Query: 411 MALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC---------------- 454
++KPFQ+KN+++IFINCLI NP F SQTKE +T + FGS C
Sbjct: 299 -SIKPFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSKCEVPNDFVNKVMKTDLA 357
Query: 455 ----------------------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLA 486
PKLEDAN AGTK CTL+LTEGDSA SLA
Sbjct: 358 TRIFDIADENAEKQLKKTDGSRKNRITEYPKLEDANKAGTKEGYKCTLVLTEGDSALSLA 417
Query: 487 VSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMK 546
V+GL VVGRD YG FPLRGK+LNVR+AT QI +NAEI + KI+GLQ+ K+Y ED
Sbjct: 418 VAGLAVVGRDYYGCFPLRGKMLNVRDATPDQITKNAEIQAIKKIMGLQHKKRY---EDAT 474
Query: 547 TLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAR---E 602
+LRYG + IMTDQD DGSHIKGLIINF+ ++P LL +P FL EFITPIIK T R +
Sbjct: 475 SLRYGHITIMTDQDHDGSHIKGLIINFLESSFPGLLDIPGFLIEFITPIIKITITRPKKQ 534
Query: 603 ELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+SFY++P++E+W+EE ++ +T+K KYYK
Sbjct: 535 TISFYNMPDYEKWREEESHKYTWKQKYYK 563
>gi|10281014|dbj|BAB13748.1| type II DNA topoisomerase [Issatchenkia orientalis]
Length = 804
Score = 505 bits (1301), Expect = e-139, Method: Compositional matrix adjust.
Identities = 282/649 (43%), Positives = 370/649 (57%), Gaps = 152/649 (23%)
Query: 73 MERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVE 132
ME++ ++ VPGL+KIFDEILVNA DNK RDP M I + +N+E N ISV N+GKGIP+
Sbjct: 4 MEKKTVSIVPGLFKIFDEILVNAADNKIRDPSMKRIDVIINEEENVISVKNDGKGIPIEI 63
Query: 133 HKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNG 192
H E +++P +IFG+LLTSSNY +D++ KVTGGRNG
Sbjct: 64 HDKENIYIPELIFGNLLTSSNY-------------------------DDDQKKVTGGRNG 98
Query: 193 YGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITFTPDL 251
YGAKLCNIFS++F V T+ + K + QVW++NMS+V P+I + K++FT+I F PDL
Sbjct: 99 YGAKLCNIFSTEFTVHTADMSHGKEYTQVWRNNMSEVGKPKILNFKKKNEFTEIIFKPDL 158
Query: 252 TKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR------ 305
+KF M LD D++ + RR YD S + ++V LNGE L + NF+ YV+LY
Sbjct: 159 SKFGMEKLDHDILGVFKRRVYDLCGSVRGIRVTLNGELLKINNFKQYVELYVKAINKSKE 218
Query: 306 ---------QDEDGDPVK-----------------------IIYENVNPRWEVAIAPSDR 333
+ EDG P+ I++E +N RWE+A SD
Sbjct: 219 ERPHIPVKIETEDGTPLNGESEANTETSSTPEPSLNENLPTIVHEIINDRWEIAFCISDG 278
Query: 334 GFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNN 393
F QVSFVNSIATT GG HVD V + + +I E +K+KNK
Sbjct: 279 SFNQVSFVNSIATTLGGTHVDDVANMLCGKITEQIKRKNK-------------------- 318
Query: 394 KLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS- 452
K +I KPFQ+K+ +++FINCL+ NP F QTKE +T Q FG
Sbjct: 319 -----KAII-----------KPFQIKSKMFLFINCLVENPAFTFQTKEYLTTQLSKFGGK 362
Query: 453 --------------------------------------------TCVPKLEDANDAGTKN 468
T PKLEDAN AGT+
Sbjct: 363 RLELPEKFIKKILNTGIIDEVLDIVQANADKALKKTDGAKKSRITGYPKLEDANKAGTRE 422
Query: 469 SIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLV 528
CTLILTEGDSAKSLAV GL VVGR+ YG FPLRGK+LNVREA+ QI++N I +
Sbjct: 423 GYKCTLILTEGDSAKSLAVQGLAVVGRNYYGCFPLRGKVLNVREASTDQIMKNGAIQAIK 482
Query: 529 KILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FL 587
+I+GLQ+ K Y +D+K+LRYGR+MIM DQD DGSHIKGL+INF+ ++P LL +P FL
Sbjct: 483 QIMGLQHKKHYGP-DDIKSLRYGRIMIMADQDHDGSHIKGLLINFLEASFPGLLEIPNFL 541
Query: 588 EEFITPIIKAT-----KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
EFITPI+K T R+ + FYS+PE+E+W+E + +YK KYYK
Sbjct: 542 IEFITPIVKITIMSGPNRRKTIPFYSMPEYEQWRETEGSTCSYKQKYYK 590
>gi|10281022|dbj|BAB13752.1| type II DNA topoisomerase [Candida parapsilosis]
Length = 779
Score = 503 bits (1296), Expect = e-139, Method: Compositional matrix adjust.
Identities = 285/624 (45%), Positives = 371/624 (59%), Gaps = 127/624 (20%)
Query: 73 MERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVE 132
M+ +E+T VPGLYKIFDEILVNA DNK RDP M IK+ ++ E N I V+N+GKGIPV
Sbjct: 4 MKFQEVTIVPGLYKIFDEILVNAADNKIRDPSMKNIKVRIDPENNVIQVFNDGKGIPVEM 63
Query: 133 HKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNG 192
H EKM++P +IFG+LLTSSNY +D++ KVTGGRNG
Sbjct: 64 HTKEKMYIPELIFGNLLTSSNY-------------------------DDDQKKVTGGRNG 98
Query: 193 YGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITFTPDL 251
+GAKLCNIFS++F VET+ K +KQ W DNM+KV P+I + +K ++TKITF PDL
Sbjct: 99 FGAKLCNIFSTQFEVETADLNTGKLYKQTWTDNMTKVGKPKITALKTKKEYTKITFKPDL 158
Query: 252 TKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDE--- 308
+KF M SLD+D++ ++ RR YD + ++ ++LN ++L V +F+ YV++Y E
Sbjct: 159 SKFDMDSLDEDLLSVLRRRVYDLCGTVRNCNIYLNDKRLSVNSFKSYVEMYVKAIKERSP 218
Query: 309 ----DGDP---VKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIV 361
+G P I++E N RWEVA A SD F QVSFVNSIATT GG HV V D I+
Sbjct: 219 EPEGEGAPKNFTTIVHEVFNDRWEVAFAVSDGTFNQVSFVNSIATTAGGTHVKYVSDQII 278
Query: 362 KQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNH 421
+++E TL + +KP +V+++
Sbjct: 279 SKLVE---------------------------------TLSKKEKGKKKLMIKPNEVRDN 305
Query: 422 IWIFINCLIVNPTFDSQTKENMTLQKGSFGS----------------TCVPK-------- 457
++IFINCLI NP F SQTKE +T + FG T + +
Sbjct: 306 MFIFINCLIENPAFTSQTKEQLTTKVSQFGGKEKFVASDNLIARVLKTGIAEKIRDIANA 365
Query: 458 ----------------------LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGR 495
L DAN AGTK+ CTLILTEG SA +LAV+GL V+GR
Sbjct: 366 NEDKALQKVDGSRKSRIKGQVNLVDANKAGTKDGTKCTLILTEGLSALNLAVAGLTVIGR 425
Query: 496 DKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMI 555
D YG FPLRGKLLNVREA+ QI +NAEIN L +I+GLQ+ K YT E++K+LRYG +MI
Sbjct: 426 DYYGCFPLRGKLLNVREASADQIAKNAEINALKQIIGLQHKKAYTA-ENIKSLRYGHIMI 484
Query: 556 MTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKAT----KAREELSFYSLP 610
MTDQDQDGSHIKGLIINF+ ++P LL +P FL EFITPI+K T A++ + FYS+P
Sbjct: 485 MTDQDQDGSHIKGLIINFLETSFPGLLDIPGFLLEFITPIVKVTVKGRGAKKVIPFYSMP 544
Query: 611 EFEEWKE---ETTNWHTYKIKYYK 631
EFE W+E +T W KYYK
Sbjct: 545 EFEAWREGEGQTCRWTQ---KYYK 565
>gi|336471051|gb|EGO59212.1| DNA topoisomerase 2 [Neurospora tetrasperma FGSC 2508]
gi|350292130|gb|EGZ73325.1| DNA topoisomerase 2 [Neurospora tetrasperma FGSC 2509]
Length = 1907
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 297/682 (43%), Positives = 376/682 (55%), Gaps = 146/682 (21%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
+P KKT A K + E +YQK +QLEHIL RPDTYIGSVE + MW+ N+ T ME R+I+
Sbjct: 116 APAKKTGAAKTATE-MYQKLTQLEHILKRPDTYIGSVERSEQKMWVFNKATGLMENRQIS 174
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
+VPGLYKIFDEILVNA DN QRD M +K+T+N+E+ ISV NNGKGIPV H EK +
Sbjct: 175 FVPGLYKIFDEILVNAADNSQRDSSMTFLKVTINRESGEISVENNGKGIPVEIHGTEKCY 234
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCN 199
VP +IFGHLL SN ++D E K GGRNGYGAKL N
Sbjct: 235 VPELIFGHLLAGSN-------------------------FDDNEKKTVGGRNGYGAKLTN 269
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMT-S 258
IFS +F +E S K +KQ W DNMSK+ P+I S DF +ITF PD +KF M
Sbjct: 270 IFSREFTLECQDSVNGKRYKQTWTDNMSKMAPPKITSNKAADFVRITFRPDFSKFGMADG 329
Query: 259 LDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQD----ED 309
+D D+ L+ RR YD A + NF+ Y LY +R + ED
Sbjct: 330 IDDDLEALLYRRVYDMAGTL---------------NFKTYCGLYAKAIAKERDEVADGED 374
Query: 310 GDPVKIIYENVNPR---WEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIE 366
P +I+E WEV SD FQQVSFVN+IATT GG HV+ + D QIIE
Sbjct: 375 VTPATVIFEQQRSEGKLWEVGFTVSDGSFQQVSFVNNIATTSGGSHVNYIAD----QIIE 430
Query: 367 VVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFI 426
V+ K +LQ K LK VKN +IFI
Sbjct: 431 VLMK-----------------------ELQKKKGKG--------HGLKTANVKNQFFIFI 459
Query: 427 NCLIVNPTFDSQTKENMTLQKGSFGSTCV------------------------------- 455
NCLI NP F SQTKE +T + FGS C+
Sbjct: 460 NCLIDNPAFSSQTKEQLTTKPAKFGSKCLLGDLFLKKVRQSEAIDNLLSFADKKRDKDLA 519
Query: 456 ------------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPL 503
KL +AN AG + S +CTLILTEGDSA+ LAV+G ++ ++ GVFPL
Sbjct: 520 KNDGSKRKRISNDKLIEANYAGGRYSQECTLILTEGDSARGLAVAGRAILDPNRIGVFPL 579
Query: 504 RGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDG 563
RGK+LNVR+A+ QIL+N E+ N+ K LGL++ K YT D K LRYG LMIM DQD DG
Sbjct: 580 RGKMLNVRDASADQILKNKEVENIKKFLGLKHGKVYT---DTKDLRYGHLMIMADQDLDG 636
Query: 564 SHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKA------TKAREELSFYSLPEFEEWK 616
SHIKGL+INF +P+LLR+P F +EFITP++K K + F++LP++EEWK
Sbjct: 637 SHIKGLLINFFECQFPSLLRIPNFFQEFITPVVKVWQGPNPKKPQRLQGFFTLPQYEEWK 696
Query: 617 EETTNWHTYKIKYYKVVYVTGV 638
E H +++ +K Y+ G+
Sbjct: 697 EA----HRNELRRWKYKYLKGL 714
Score = 109 bits (273), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 81/120 (67%), Gaps = 10/120 (8%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMI------RGED-PL-P 711
IEP+ Y PIIPMVLVNGA+GIGTGW T IPN++P +IV+N+KR + GE+ P P
Sbjct: 922 IEPKVYAPIIPMVLVNGADGIGTGWSTSIPNYHPLDIVENLKRRMGRDSSGDGEEKPFEP 981
Query: 712 MKPWYKNFKGEIDYCGDSRFVVNG--EIAILDDDKLEITELQVGKWTTDYKDTLDTLLHG 769
M PW++ +KG + G +RF NG E+ + +++++TEL + WT D+K L+ ++ G
Sbjct: 982 MTPWFRGWKGTPEPDGPNRFKFNGIVEVNPQNPNEVDVTELPIRMWTDDFKSKLEEIIRG 1041
Score = 51.2 bits (121), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 835 DDEAGSQTQEEEDPD----KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAP 890
D+E G+ E+E+ +DYDYLL M WSLT ER ++L ++ K E + L +
Sbjct: 1192 DEELGAADNEDEEDAVGGARDYDYLLSMPIWSLTFERLDKLKQQIAAKKAEHDELDALSE 1251
Query: 891 TDLWSDDLDAL 901
DLW DLDA
Sbjct: 1252 KDLWCRDLDAF 1262
>gi|164425154|ref|XP_962372.2| DNA topoisomerase 2 [Neurospora crassa OR74A]
gi|157070812|gb|EAA33136.2| DNA topoisomerase 2 [Neurospora crassa OR74A]
Length = 1909
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 297/682 (43%), Positives = 376/682 (55%), Gaps = 146/682 (21%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
+P KKT A K + E +YQK +QLEHIL RPDTYIGSVE + MW+ N+ T ME R+I+
Sbjct: 116 APAKKTGAAKTATE-MYQKLTQLEHILKRPDTYIGSVERSEQKMWVFNKATGLMENRQIS 174
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
+VPGLYKIFDEILVNA DN QRD M +K+T+N+E+ ISV NNGKGIPV H EK +
Sbjct: 175 FVPGLYKIFDEILVNAADNSQRDSSMTFLKVTINRESGEISVENNGKGIPVEIHGTEKCY 234
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCN 199
VP +IF GHLL SN++D E K GGRNGYGAKL N
Sbjct: 235 VPELIF-------------------------GHLLAGSNFDDNEKKTVGGRNGYGAKLTN 269
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMT-S 258
IFS +F +E S K +KQ W DNMSK++ P+I S DF +ITF PD +KF M
Sbjct: 270 IFSREFTLECQDSVNGKRYKQTWTDNMSKMSPPKITSNKAADFVRITFRPDFSKFGMADG 329
Query: 259 LDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQD----ED 309
+D D+ L+ RR YD A + NF+ Y LY +R + ED
Sbjct: 330 IDDDLEALLYRRVYDMAGTL---------------NFKTYCGLYAKAIAKERDEVADGED 374
Query: 310 GDPVKIIYENVNPR---WEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIE 366
P +I+E WEV SD FQQVSFVN+IATT GG HV+ + D QIIE
Sbjct: 375 VTPATVIFEQQRSEGKLWEVGFTVSDGSFQQVSFVNNIATTSGGSHVNYIAD----QIIE 430
Query: 367 VVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFI 426
V+ K+ LQ K LK VKN +IFI
Sbjct: 431 VLMKE-----------------------LQKKKGKG--------HGLKTANVKNQFFIFI 459
Query: 427 NCLIVNPTFDSQTKENMTLQKGSFGSTCV------------------------------- 455
NCLI NP F SQTKE +T + FGS C
Sbjct: 460 NCLIDNPAFSSQTKEQLTTKPAKFGSKCQLGDLFLKKVRQSEAIDNLLSFADKKRDKDLA 519
Query: 456 ------------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPL 503
KL +AN AG + S +CTLILTEGDSA+ LAV+G ++ ++ GVFPL
Sbjct: 520 KNDGSKRKRISNDKLIEANYAGGRYSQECTLILTEGDSARGLAVAGRAILDPNRIGVFPL 579
Query: 504 RGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDG 563
RGK+LNVR+A+ QIL+N E+ N+ K LGL++ K YT D K LRYG LMIM DQD DG
Sbjct: 580 RGKMLNVRDASADQILKNKEVENIKKFLGLKHGKVYT---DTKDLRYGHLMIMADQDLDG 636
Query: 564 SHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKA------TKAREELSFYSLPEFEEWK 616
SHIKGL+INF +P+LLR+P F +EFITP++K K + F++LP++EEWK
Sbjct: 637 SHIKGLLINFFECQFPSLLRIPNFFQEFITPVVKVWQGPNPKKPQRLQGFFTLPQYEEWK 696
Query: 617 EETTNWHTYKIKYYKVVYVTGV 638
E H +++ +K Y+ G+
Sbjct: 697 EA----HRNELRRWKYKYLKGL 714
Score = 109 bits (273), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 81/120 (67%), Gaps = 10/120 (8%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMI------RGED-PL-P 711
IEP+ Y PIIPMVLVNGA+GIGTGW T IPN++P +IV+N+KR + GE+ P P
Sbjct: 922 IEPKVYAPIIPMVLVNGADGIGTGWSTSIPNYHPLDIVENLKRRMGRDSSGDGEEKPFEP 981
Query: 712 MKPWYKNFKGEIDYCGDSRFVVNG--EIAILDDDKLEITELQVGKWTTDYKDTLDTLLHG 769
M PW++ +KG + G +RF NG E+ + +++++TEL + WT D+K L+ ++ G
Sbjct: 982 MTPWFRGWKGTPEPDGPNRFKFNGIVEVNPQNPNEVDVTELPIRMWTDDFKSKLEEIIRG 1041
Score = 51.2 bits (121), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 835 DDEAGSQTQEEEDPD----KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAP 890
D+E G+ E+E+ +DYDYLL M WSLT ER ++L ++ K E + L +
Sbjct: 1192 DEELGAADNEDEEDAVGGARDYDYLLSMPIWSLTFERLDKLKQQIAAKKAEHDELDALSE 1251
Query: 891 TDLWSDDLDAL 901
DLW DLDA
Sbjct: 1252 KDLWCRDLDAF 1262
>gi|385301382|gb|EIF45574.1| dna topoisomerase ii [Dekkera bruxellensis AWRI1499]
Length = 623
Score = 501 bits (1290), Expect = e-138, Method: Compositional matrix adjust.
Identities = 281/647 (43%), Positives = 362/647 (55%), Gaps = 141/647 (21%)
Query: 15 NGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHME 74
N G K K + + YQK +QLEHIL RPDTYIGSVE W+ N T ME
Sbjct: 34 NSTGAKTSSKKNGGKTASDN-YQKLTQLEHILKRPDTYIGSVEKFESEQWIYNTTTESME 92
Query: 75 RREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHK 134
++++ VPGL+KIFDEILVNA DNK RDP M I + ++ E N SV N+G+GIPV H
Sbjct: 93 FKKVSIVPGLFKIFDEILVNAADNKIRDPSMKRIDVKIDPENNLFSVKNDGRGIPVEIHT 152
Query: 135 DEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYG 194
EK+++P +IF G+LLTSSNYND+E KVTGGRNGYG
Sbjct: 153 KEKIYIPELIF-------------------------GNLLTSSNYNDKEKKVTGGRNGYG 187
Query: 195 AKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIK-SGSKDDFTKITFTPDLTK 253
AKLCNIFS++F V+T+ K++ Q W +NMS V P+IK +K ++T+I+F PDL K
Sbjct: 188 AKLCNIFSTEFTVKTADRTNGKTYSQTWHNNMSIVDKPKIKPMKTKSEYTEISFKPDLAK 247
Query: 254 FKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD--------- 304
F M SLD D++ ++ RR +D S + ++V LNG+ L + NF+ Y +LY
Sbjct: 248 FGMESLDDDILGVLRRRVFDLCGSVRGIRVTLNGKALKINNFKQYTELYVKALSENQNGS 307
Query: 305 ----------RQDEDGD-------------PVKIIYENVNPRWEVAIAPSDRGFQQVSFV 341
Q +D D V +IY +N RWE+A + SD F QVSFV
Sbjct: 308 SSRSSSXVKVEQIDDADQSESSPAXLESTKKVPLIYYAINDRWEIAFSLSDGNFHQVSFV 367
Query: 342 NSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTL 401
NSIATT GG HVD +V+ +V +I+E +KKK++
Sbjct: 368 NSIATTSGGTHVDLIVNMLVNKIMEHIKKKHRR--------------------------- 400
Query: 402 IDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--------- 452
L+PFQ+KN+I++FINCLI NP F SQTKE +T + +G
Sbjct: 401 ---------AMLRPFQIKNNIFVFINCLIENPAFTSQTKEQLTTRPSQYGGRXLELPETF 451
Query: 453 ------------------------------------TCVPKLEDANDAGTKNSIDCTLIL 476
T PKLEDAN AGT+ CTLIL
Sbjct: 452 LKKVFNSGILDQVMDIAQANADRALKRMDGRKKNRITGYPKLEDANXAGTREGYKCTLIL 511
Query: 477 TEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYS 536
TEGDSA +LAV+GL VVGR+ YG +PLRGKLLNVREA+ QI+ NAEI + +I+GLQ+
Sbjct: 512 TEGDSALTLAVAGLAVVGRNYYGCYPLRGKLLNVREASADQIMRNAEIQAIKQIMGLQHK 571
Query: 537 KKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR 583
KKY ++K+LRYG LMIMTDQD DGSHIKGLIINF+ P R
Sbjct: 572 KKYDPA-NIKSLRYGHLMIMTDQDTDGSHIKGLIINFLVDFLPWSFR 617
>gi|10281024|dbj|BAB13753.1| type II DNA topoisomerase [Candida parapsilosis]
Length = 779
Score = 500 bits (1287), Expect = e-138, Method: Compositional matrix adjust.
Identities = 281/621 (45%), Positives = 369/621 (59%), Gaps = 121/621 (19%)
Query: 73 MERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVE 132
M+ +E+T VPGLYKIFDEILVNA DNK RDP M IK+ ++ E N I V+N+GKGIPV
Sbjct: 4 MKFQEVTIVPGLYKIFDEILVNAADNKIRDPSMKNIKVRIDPENNVIQVFNDGKGIPVEM 63
Query: 133 HKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNG 192
H EKM++P +IFG+LLTSSNY +D++ KVTGGRNG
Sbjct: 64 HTKEKMYIPELIFGNLLTSSNY-------------------------DDDQKKVTGGRNG 98
Query: 193 YGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITFTPDL 251
+GAKLCNIFS++F VET+ K +KQ W DNM+KV P+I + +K ++TKITF PDL
Sbjct: 99 FGAKLCNIFSTQFEVETADLNTGKLYKQTWTDNMTKVGKPKINALKTKKEYTKITFKPDL 158
Query: 252 TKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDE--- 308
+KF M SLD+D++ ++ RR YD + K+ ++LN ++LPV +F+ YV++Y E
Sbjct: 159 SKFDMDSLDEDLLSVLRRRVYDLCGTVKNCNIYLNDKRLPVTSFKSYVEMYVKAIKERSP 218
Query: 309 ----DGDP---VKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIV 361
+G P I++E N RWEVA A SD F QVSFVNSIATT GG HV V D I+
Sbjct: 219 EPEGEGAPKNYTTIVHEVFNERWEVAFAVSDGSFNQVSFVNSIATTAGGTHVKYVSDQII 278
Query: 362 KQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNH 421
+++E TL + +KP +V+++
Sbjct: 279 TKLVE---------------------------------TLSKKEKGKKKLMIKPNEVRDN 305
Query: 422 IWIFINCLIVNPTFDSQTKENMTLQKGSFGS----------------TCVP--------- 456
++IFINCLI NP F SQTKE +T + FG T +
Sbjct: 306 MFIFINCLIENPAFTSQTKEQLTTKVSQFGGKEKFVASDNLISRVLKTGIADKIRDIANA 365
Query: 457 ---------------------KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGR 495
L DAN AGT++ + CTLILTEG SA +LAV+GL V+GR
Sbjct: 366 NEDKALQKVDGSRKSRIKGQVNLVDANKAGTRDGLKCTLILTEGLSALNLAVAGLTVIGR 425
Query: 496 DKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMI 555
D YG FPLRGKLLNVREA+ QI +NAEIN+L +I+GLQ+ K Y E++K+LRYG + I
Sbjct: 426 DYYGCFPLRGKLLNVREASADQIAKNAEINSLKQIIGLQHKKTYNA-ENIKSLRYGHIPI 484
Query: 556 MTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKAT----KAREELSFYSLP 610
MTDQDQDGSHIKGLIINF+ ++P LL +P FL EFITPI+K T A++ + FYS+P
Sbjct: 485 MTDQDQDGSHIKGLIINFLETSFPGLLDIPGFLLEFITPIVKVTVKGRGAKKIIPFYSMP 544
Query: 611 EFEEWKEETTNWHTYKIKYYK 631
EFE W++ + KYYK
Sbjct: 545 EFETWRDGEGQTCRWTQKYYK 565
>gi|145496633|ref|XP_001434307.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124401431|emb|CAK66910.1| unnamed protein product [Paramecium tetraurelia]
Length = 1220
Score = 498 bits (1282), Expect = e-137, Method: Compositional matrix adjust.
Identities = 282/648 (43%), Positives = 382/648 (58%), Gaps = 132/648 (20%)
Query: 40 SQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNK 99
S +EHIL RPDTYIGSV+ + E MW++ + M ++EI YVP +KIFD+ILVNA DN
Sbjct: 2 SHIEHILNRPDTYIGSVQKMNELMWIV--KNGKMIQKEIEYVPAFFKIFDDILVNAADNI 59
Query: 100 QRDP---KMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYND 156
QR+ KM+ +++ + N ISV N+G+ IPV HK+ +++VP +IF
Sbjct: 60 QRNNQTYKMSSLRVEIG---NQISVKNDGQPIPVEIHKEYQLYVPELIF----------- 105
Query: 157 EEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET-SCSEYK 215
G LT SN++D E +V GGRNGYGAKL N++SS+F VE S Y
Sbjct: 106 --------------GVSLTGSNFDDTEKRVVGGRNGYGAKLTNVYSSEFSVEVCDGSNY- 150
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
KQVW +NMS P IK KD F +IT+ PD +F M +++D L+ RR YD A
Sbjct: 151 --LKQVWSNNMSNKQIPIIKQMKKDPFVQITYKPDFKRFGMNEIEEDTQALLVRRVYDMA 208
Query: 276 ASTKD-VKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKII-YENVNPRWEVAIAPSDR 333
+ + V+LN EK+P+ +FQ YV LY + +KI E PRWEV ++ S
Sbjct: 209 GIYGNRINVYLNDEKIPINSFQKYVDLYLP-----SNSIKIYDKEMTTPRWEVVVSYSAT 263
Query: 334 GFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNN 393
FQ VSFVNSI T+KGG HV V D ++++I N +K+N
Sbjct: 264 QFQHVSFVNSIFTSKGGTHVTHVTDKLIQEIQ----------------------NEMKSN 301
Query: 394 KLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGST 453
K + + ++ +Q+K +WIF+NCLI NPTFDSQTKEN+T + FG T
Sbjct: 302 K------------KYKHLEVQKYQIKQSLWIFVNCLINNPTFDSQTKENLTTRVTDFGGT 349
Query: 454 -------------------------------------------------CVPKLEDANDA 464
+ KL+DANDA
Sbjct: 350 DEEKFKVTEKFSKALIKTDIIETIFQQAKAKADAKLNKQLKGTKTSKLHGIEKLDDANDA 409
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
G KNS CTLILTEGDSAK+LA++G+ +VGRD+YGVFPL+GKLLNVREA+ KQI++N EI
Sbjct: 410 GKKNSEFCTLILTEGDSAKALAMAGIDIVGRDRYGVFPLKGKLLNVREASVKQIMDNEEI 469
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
NL+KI+GLQ ++Y D+K+LRYG +MIMTDQD DGSHIKGLIINFIHH WP+LL+
Sbjct: 470 QNLIKIIGLQKDREYG---DLKSLRYGSVMIMTDQDIDGSHIKGLIINFIHHFWPSLLKY 526
Query: 585 P-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL+EF+TP+IKATK + + F+++ +F ++ + + ++KIKYYK
Sbjct: 527 KGFLKEFVTPLIKATKGNQTIPFFTVQDFNKFA-QIQDIKSWKIKYYK 573
Score = 107 bits (268), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPE+Y+PIIPM LVNGAEGIGTGW T I N+NP E+V+ IK+ + GE + P+Y+NF
Sbjct: 783 VEPEYYVPIIPMSLVNGAEGIGTGWSTSIQNYNPVELVEQIKKRLNGEQFDNLTPYYRNF 842
Query: 720 KGEIDYCGDSRFVVNGEIAILDD-DKLEITELQVGKWTTDYKDTLD 764
G I+ + +V G I ++ D + I EL + KWT +YK+ LD
Sbjct: 843 DGNIETQPNGNSLVKGIIECNEETDIVTIKELPIKKWTKNYKEWLD 888
>gi|288567|emb|CAA78815.1| DNA topoisomerase II [Homo sapiens]
Length = 400
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 246/428 (57%), Positives = 299/428 (69%), Gaps = 62/428 (14%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
+ K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T
Sbjct: 34 TANKNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVG-MNCREVT 92
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
+VPGLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++
Sbjct: 93 FVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVY 152
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCN 199
VP +IF G LLTSSNY+D+E KVTGGRNGYGAKLCN
Sbjct: 153 VPALIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCN 187
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSL 259
IFS+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM L
Sbjct: 188 IFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKL 247
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYE 318
DKD+V L+TRRAYD A S + VKV NG+KLPV F+ YV LY D+ DE G +K+I+E
Sbjct: 248 DKDIVALMTRRAYDLAGSCRGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHE 307
Query: 319 NVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCT 378
N RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 308 LANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK----- 362
Query: 379 IIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQ 438
G+++KPFQVKNHIW+FINCLI NPTFDSQ
Sbjct: 363 ------------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQ 392
Query: 439 TKENMTLQ 446
TKENMTLQ
Sbjct: 393 TKENMTLQ 400
>gi|281203022|gb|EFA77223.1| DNA topoisomerase II [Polysphondylium pallidum PN500]
Length = 1265
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 280/706 (39%), Positives = 381/706 (53%), Gaps = 153/706 (21%)
Query: 16 GNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETN---- 71
G G + A S+E +YQKK+ EH+LLRPD+YIG+++ I + MW++++
Sbjct: 76 GGGTTASNTKVAKSKSIEDVYQKKTPTEHVLLRPDSYIGTIQTIEDDMWMLSKSIFGSTK 135
Query: 72 --------------------------HMERREITYVPGLYKIFDEILVNACDNKQRDPKM 105
++ + Y+PGL KIFDEILVNA DNKQRD M
Sbjct: 136 NDSQSTSSKKLKSTDSTATVATVDPLYIHSVKAKYIPGLLKIFDEILVNAADNKQRDNTM 195
Query: 106 NCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVV 165
+ IK+ ++ + +SV N+GKGIPV HK E ++VP M+ G+L++ SN+
Sbjct: 196 SYIKVELDPVSGVLSVENDGKGIPVAMHKTENVYVPEMVMGNLMSGSNF----------- 244
Query: 166 PTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDN 225
ND E KV GGRNG+GAKL NIFS F VET + Q W DN
Sbjct: 245 --------------NDSELKVVGGRNGFGAKLTNIFSKHFKVETYDKSNGLRYSQSWSDN 290
Query: 226 MSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSL-DKDMVDLITRRAYDAAASTKDVKV 283
MS P I K +FT+I F PDL KF + SL +D++ L+ RR YD A D+KV
Sbjct: 291 MSVRHDPIIEKVRLSSEFTRIEFKPDLEKFHLKSLVGEDIIYLMERRVYDIAGCNPDIKV 350
Query: 284 FLNGEKLPVK-NFQDYVKLY------TDRQDEDGDPVKIIYENVNPRWEVAIAPSDRG-F 335
LNG P+K +FQ Y KLY + ++ + + + RW + I SD G F
Sbjct: 351 SLNGT--PIKYDFQSYAKLYEHHLSRSQEKNLSNPQDNLTFGQIGDRWNIGIGTSDTGQF 408
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
QVSFVNSI T KGG HV+ + D +++ I E +KKK+ DL
Sbjct: 409 TQVSFVNSINTLKGGSHVNFIADQVIRYIAERIKKKHPDL-------------------- 448
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGST-- 453
++P +K+H+ +F+NCLI NP+FDSQTKE +T + +FGST
Sbjct: 449 ----------------EVRPMNIKHHLSLFVNCLIENPSFDSQTKETLTTKPINFGSTPE 492
Query: 454 ----------------------------------------------CVPKLEDANDAGTK 467
+PKL+DAN AG
Sbjct: 493 VPEKMLEQFVKQSKIIDKIAGWVLMRQQAELVYQSSTRTSKSTLAKSIPKLDDANWAGGP 552
Query: 468 NSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNL 527
S CTLI+TEGDSAKSLAV+G+ V+GRD++GVFPLRGKLLNVR+ KQ+L N EINNL
Sbjct: 553 KSRQCTLIITEGDSAKSLAVAGMSVLGRDRFGVFPLRGKLLNVRDVAPKQLLSNEEINNL 612
Query: 528 VKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFL 587
ILGL + ++Y + + LRYG+++IMTDQD DGSHIKGL INFIH+ WP LL+ FL
Sbjct: 613 TNILGLSHKRRYHDEQSLSELRYGKVLIMTDQDNDGSHIKGLFINFIHYFWPELLKADFL 672
Query: 588 EEFITPIIKATKAREELSFYSLPEFEEWKEET--TNWHTYKIKYYK 631
EEF+TPIIK +K + SF+++ ++ +W+ + + IKYYK
Sbjct: 673 EEFVTPIIKVSKGADRKSFFTINDYLKWQRSLPDQSLKGWNIKYYK 718
Score = 94.0 bits (232), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 70/111 (63%), Gaps = 6/111 (5%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMK---PWY 716
I+P +YIPIIPM+LVNG+ GIG G +P ++P ++++ + +++ + MK PWY
Sbjct: 927 IQPSYYIPIIPMILVNGSSGIGVGMSNSVPLYSPIDLIEYL--LLKLSNQRQMKKLIPWY 984
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
+ FKG I G S F +G I I + L I E+ +GKWT+DYK L+ L+
Sbjct: 985 RGFKGNIVISGKS-FKTSGLIKITGRNSLSIREIPIGKWTSDYKQVLNDLI 1034
>gi|10281016|dbj|BAB13749.1| type II DNA topoisomerase [Candida tropicalis]
Length = 782
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 284/627 (45%), Positives = 367/627 (58%), Gaps = 124/627 (19%)
Query: 70 TNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIP 129
T M +E+T VPGLYKIFDEILVNA DNK RDP M IK+ ++ E NTI V N+GKGIP
Sbjct: 1 TESMVFKEVTIVPGLYKIFDEILVNAADNKIRDPTMKNIKVKIDPENNTIEVMNDGKGIP 60
Query: 130 VVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGG 189
V H E M++P +IF G+LLTSSNY+D + KVTGG
Sbjct: 61 VEMHTKENMYIPELIF-------------------------GNLLTSSNYDDNQKKVTGG 95
Query: 190 RNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITFT 248
RNG+GAKLCNIFS++F VET+ K +KQVW DNM+ V P+I + +K ++TKITF
Sbjct: 96 RNGFGAKLCNIFSTQFEVETADLNTGKLYKQVWTDNMTNVAKPKITTLRTKKEYTKITFK 155
Query: 249 PDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT----- 303
PDL KF M SLD+D++ ++ RR YD + K+ ++LN ++L + +F+ YV++Y
Sbjct: 156 PDLAKFDMDSLDEDLLAVLRRRVYDLCGTVKNCNIYLNDKRLSISSFKSYVEMYVKAIRE 215
Query: 304 ---DRQDEDG---DPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVV 357
+ EDG + I++E N RWEVA A SD F QVSFVNSIATT GG HV V
Sbjct: 216 RSPEPLTEDGTSKNFTTIVHEVFNERWEVAFAVSDGTFNQVSFVNSIATTAGGTHVKYVS 275
Query: 358 DAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQ 417
D I+ +++E TL + +KP +
Sbjct: 276 DQIINKLVE---------------------------------TLSKKEKGKKKLMIKPQE 302
Query: 418 VKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFG-----------------STCVPK--- 457
V++++++FINCLI NP F SQTKE +T + FG ++ V K
Sbjct: 303 VRDNMFLFINCLIENPAFTSQTKEQLTTKVSQFGGKQKFVANDNLINRILKTSIVDKIRA 362
Query: 458 --------------------------LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLG 491
L DAN AGTK +CTLILTEG SA +LAV+GL
Sbjct: 363 IANANEDKALQKADGSRKSRIKGQVSLVDANKAGTKLGHNCTLILTEGLSALNLAVAGLS 422
Query: 492 VVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYG 551
VVGRD YG FPLRGKLLNVREA+ QI +NAEIN L +I+GLQ+ K YT E++K LRYG
Sbjct: 423 VVGRDYYGCFPLRGKLLNVREASADQISKNAEINALKQIIGLQHKKHYTA-ENIKQLRYG 481
Query: 552 RLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKAT-KAREE-----L 604
+MIMTDQDQDGSHIKGLIINF+ ++P LL +P FL EFITPI+K T K R +
Sbjct: 482 HIMIMTDQDQDGSHIKGLIINFLETSFPGLLEIPGFLLEFITPIVKVTIKTRGSGNNRVI 541
Query: 605 SFYSLPEFEEWKEETTNWHTYKIKYYK 631
FY++PEFE W++ + + KYYK
Sbjct: 542 PFYTMPEFEAWRDGEGSQCRWTHKYYK 568
>gi|10281020|dbj|BAB13751.1| type II DNA topoisomerase [Candida dubliniensis]
Length = 782
Score = 491 bits (1264), Expect = e-135, Method: Compositional matrix adjust.
Identities = 280/627 (44%), Positives = 369/627 (58%), Gaps = 124/627 (19%)
Query: 70 TNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIP 129
T M +E+T VPGLYKIFDEILVNA DNK RDP M I++ ++ E N I V N+GKGIP
Sbjct: 1 TESMVFKEVTIVPGLYKIFDEILVNAADNKIRDPSMKNIRVKIDAENNIIEVMNDGKGIP 60
Query: 130 VVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGG 189
V H E M++P +IF G+LLTSSNY+D E KVTGG
Sbjct: 61 VEMHTKENMYIPELIF-------------------------GNLLTSSNYDDNEKKVTGG 95
Query: 190 RNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITFT 248
RNG+GAKLCNIFS++F VET+ K +KQ W +NMS V+ P+I + +K ++TKITF
Sbjct: 96 RNGFGAKLCNIFSTQFEVETADLNMGKLYKQSWTNNMSNVSKPKITTLKTKKEYTKITFR 155
Query: 249 PDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT----- 303
PDL+KF M LD D++ ++ RR YD + K+ ++LN ++L + +F+ YV++Y
Sbjct: 156 PDLSKFDMDCLDNDLLSVLRRRVYDLCGTVKNCNIYLNEKRLNISSFKSYVEMYVKAIKE 215
Query: 304 ---DRQDEDG---DPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVV 357
+ + +DG + I++E N RWEVA A SD F QVSFVNSIATT GG HV V
Sbjct: 216 RSPEPEPQDGTIKNFTTIVHEVFNDRWEVAFAVSDGSFNQVSFVNSIATTSGGTHVKYVS 275
Query: 358 DAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQ 417
D I+ +++E TL + +KP +
Sbjct: 276 DQIINKLVE---------------------------------TLSKKEKGKKKLMIKPQE 302
Query: 418 VKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFG-----------------STCVPK--- 457
V++++++FINCLI NP F SQTKE +T + FG ++ V K
Sbjct: 303 VRDNMFLFINCLIENPAFTSQTKEQLTTKVSQFGGKDKFVANDNLINRILKTSIVEKIRA 362
Query: 458 --------------------------LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLG 491
L DAN AGTK+ +CTLILTEG SA +LAV+GL
Sbjct: 363 IANANEDKALQKADGSRKSRIKGQVNLVDANRAGTKDGHNCTLILTEGLSAMNLAVAGLS 422
Query: 492 VVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYG 551
VVGRD YG FPLRGKLLNVREA+ QI +NAEIN+L +I+GLQ+ K YT E++K+LRYG
Sbjct: 423 VVGRDYYGCFPLRGKLLNVREASADQIAKNAEINSLKQIIGLQHKKVYTA-ENIKSLRYG 481
Query: 552 RLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKAT-KAR-----EEL 604
+MIMTDQDQDGSHIKGLIINF+ ++P LL +P FL EFITPI+K T +AR +
Sbjct: 482 HIMIMTDQDQDGSHIKGLIINFLETSFPGLLDIPGFLLEFITPIVKVTVRARGAGGKRVI 541
Query: 605 SFYSLPEFEEWKEETTNWHTYKIKYYK 631
FY++PEFE W++ + KYYK
Sbjct: 542 PFYTMPEFEHWRDTEGKQCRWTQKYYK 568
>gi|367033261|ref|XP_003665913.1| DNA topoisomerase 2-like protein [Myceliophthora thermophila ATCC
42464]
gi|347013185|gb|AEO60668.1| DNA topoisomerase 2-like protein [Myceliophthora thermophila ATCC
42464]
Length = 1772
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 282/682 (41%), Positives = 368/682 (53%), Gaps = 146/682 (21%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
+P K S + YQK +QLEHI+ RPDTYIGSVE + MW+ N+ ME R I+
Sbjct: 102 APVSKPAGKPKSATETYQKLTQLEHIIKRPDTYIGSVERTDQKMWVFNKTEKLMENRTIS 161
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
YVPGLYKIFDEILVNA DN QRD M +K+T+++E+ ISV NNGKGIPV H+ E+ +
Sbjct: 162 YVPGLYKIFDEILVNAADNSQRDSSMTYLKVTIDRESGEISVENNGKGIPVEIHEKEQCY 221
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCN 199
+P +IF GHLLT SNY+D E K GGRNGYGAKL N
Sbjct: 222 IPELIF-------------------------GHLLTGSNYDDNEKKTVGGRNGYGAKLTN 256
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKM-TS 258
IFS +F +E S K +KQ W DNM + +I S DF K+TF PD +F M
Sbjct: 257 IFSQRFTIELQDSTNGKRYKQTWTDNMGNMEKAKIVSNKSSDFVKVTFLPDYKRFGMENG 316
Query: 259 LDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR-QDEDGDP----- 312
+D D+ L+ RR YD A + NF+ Y ++Y +E GD
Sbjct: 317 IDDDLEALLYRRVYDMAGTV---------------NFKTYCEMYAKAIANERGDAAVDGE 361
Query: 313 -----VKIIYENVNPR-WEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIE 366
V+ + N R W+V SD FQQVSFVN+IATT GG HV+ + D I + + +
Sbjct: 362 KPAAKVEFDQQRSNGRLWQVGFTVSDGSFQQVSFVNNIATTSGGTHVNYIADQICEALGK 421
Query: 367 VVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFI 426
+ KK K G +LKP +NHI+IFI
Sbjct: 422 ELNKKKK------------------------------------GHSLKPSHFRNHIFIFI 445
Query: 427 NCLIVNPTFDSQTKENMTLQKGSFGSTCV------------------------------- 455
NCLI NP F SQTKE +T + +FGS C
Sbjct: 446 NCLIDNPAFTSQTKEQLTTKVSAFGSKCQLSDQFLKKVKASEAIANIMEFADRKADKMMA 505
Query: 456 ------------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPL 503
KL DAN AGTK +CTLILTEGDSA+ LAV+G V+ D+ GVFPL
Sbjct: 506 KSDGNKRSRISNDKLIDANWAGTKRGHECTLILTEGDSARGLAVAGRAVLDPDRIGVFPL 565
Query: 504 RGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDG 563
RGK+LNVR+A+ QI++N EI N+ KILGL++ + Y +D + LRYG LMIM DQD DG
Sbjct: 566 RGKMLNVRDASLDQIMKNKEIENIKKILGLKHKQDY---KDTRGLRYGHLMIMADQDLDG 622
Query: 564 SHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKA------TKAREELSFYSLPEFEEWK 616
SHIKGL+INF+ +P+LLR+ F +EFITP++K K + F++LP++E WK
Sbjct: 623 SHIKGLLINFLEVQFPSLLRVEDFFQEFITPVVKVWQGNNPKKPQNLKMFFNLPQYETWK 682
Query: 617 EETTNWHTYKIKYYKVVYVTGV 638
E H +++ +K Y+ G+
Sbjct: 683 EA----HKAELRRWKYKYLKGL 700
Score = 112 bits (279), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 82/123 (66%), Gaps = 11/123 (8%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP--------LP 711
IEP+ Y+PIIPMVLVNGA+GIGTGW T+IPN++P +IV+N+KR + DP P
Sbjct: 908 IEPKVYVPIIPMVLVNGADGIGTGWSTQIPNYHPLDIVENLKRRMGRLDPNDPEEKPFKP 967
Query: 712 MKPWYKNFKGEIDYCGDSRFVVNGEIAILDD--DKLEITELQVGKWTTDYKDTLDTLLHG 769
M PW++ +KG ++ G +RF NG I + +++ +TEL + WT D+K L+ +L
Sbjct: 968 MTPWWRGWKGVVEPDGPNRFKFNGVIKQDEQNPNEIHVTELPIRMWTDDFKSRLEEILR- 1026
Query: 770 AEK 772
AEK
Sbjct: 1027 AEK 1029
Score = 50.1 bits (118), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 826 QERQAAEGEDDEAGSQTQEEEDPD---KDYDYLLGMTFWSLTMERKNELLKKRDDKMTEL 882
+E + + D+E G E+ED +DYDYLL M WSLT ER +L + K E
Sbjct: 1168 KEDKKVKSTDEELGKDDAEDEDVSSDARDYDYLLSMPIWSLTNERLEKLKNQIAAKKAEY 1227
Query: 883 NILKKKAPTDLWSDDLDALREK 904
+ L+ + DLW DLD E+
Sbjct: 1228 DELEALSEKDLWVKDLDEFVEE 1249
>gi|340059390|emb|CCC53774.1| putative DNA topoisomerase II, fragment [Trypanosoma vivax Y486]
Length = 966
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 273/643 (42%), Positives = 360/643 (55%), Gaps = 135/643 (20%)
Query: 52 YIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPK-MNCIKI 110
YIG++EP+TE MW+ + + M+ R T+ PGLYKIFDEILVNA DNK RDP IK+
Sbjct: 2 YIGTIEPVTEDMWVYDEGESIMKMRNCTWTPGLYKIFDEILVNAADNKVRDPHGQTAIKV 61
Query: 111 TVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIF 170
++ + V+NNG+GIPV H++ ++VP MIF
Sbjct: 62 WIDVNKGMVRVYNNGEGIPVQRHREHNLWVPEMIF------------------------- 96
Query: 171 GHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVT 230
GHLLTSSNYND E KVTGGRNG+GAKL N+FS F VET+ S +K F W+ NM
Sbjct: 97 GHLLTSSNYNDAEAKVTGGRNGFGAKLTNVFSKCFEVETAHSRSRKKFFMRWRRNM---- 152
Query: 231 SPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAST-KDVKVFLNGEK 289
+ + T +TF PD KF +T +DMV L+ RR YD A T K ++ +LN K
Sbjct: 153 -------LESELTVVTFYPDFEKFGLTGFSEDMVLLMQRRVYDIAGCTDKTLRCYLNDTK 205
Query: 290 LPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKG 349
+ F +YV LY E+ P Y VN RWEV + S+ GFQQVSFVNSIATT+G
Sbjct: 206 IACSTFSEYVDLYPT-MGEERKPAS--YARVNDRWEVCVRVSNIGFQQVSFVNSIATTRG 262
Query: 350 GRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLG 409
G HV + D I+ +++E +K+K
Sbjct: 263 GTHVKYIGDQIISKVVEQAMRKSK------------------------------------ 286
Query: 410 GMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC--------------- 454
+KP ++ H+++FINCLI NP FDSQTKE + K FGSTC
Sbjct: 287 -TEVKPHMIRPHLFMFINCLIENPGFDSQTKETLNTPKTRFGSTCDLPSSMIEYILKSSI 345
Query: 455 ------------------------------VPKLEDANDAGTKNSIDCTLILTEGDSAKS 484
+PKL+DAN+AG ++S CTLILTEGDSAK+
Sbjct: 346 LDRAVEMANSKLTREMASKLRNADRKQILGIPKLDDANEAGGRHSHRCTLILTEGDSAKA 405
Query: 485 LAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVED 544
L +GL V RD +GVFPLRGK LNVR+A+ K+++ AE + KI+GL +KYT+ E
Sbjct: 406 LCTAGLAVKDRDYFGVFPLRGKPLNVRDASLKKVMACAEFQAVSKIMGLDIRQKYTSSEG 465
Query: 545 MKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATK---- 599
LRYG LMIM+DQD DGSHIKGLIIN IH+ WP LL++P FL++FITPI+KA K
Sbjct: 466 ---LRYGHLMIMSDQDHDGSHIKGLIINMIHNYWPDLLKVPGFLQQFITPIVKARKKGRG 522
Query: 600 -AREE--LSFYSLPEFEEWKEETTNW-HTYKIKYYKVVYVTGV 638
EE +SF+S+P++ EWK + Y+++YYK + +G
Sbjct: 523 AGAEEGTISFFSMPDYFEWKNAIGDGIKNYELRYYKGLGTSGA 565
>gi|308483878|ref|XP_003104140.1| hypothetical protein CRE_01053 [Caenorhabditis remanei]
gi|308258448|gb|EFP02401.1| hypothetical protein CRE_01053 [Caenorhabditis remanei]
Length = 1165
Score = 481 bits (1237), Expect = e-132, Method: Compositional matrix adjust.
Identities = 279/669 (41%), Positives = 386/669 (57%), Gaps = 130/669 (19%)
Query: 24 KTPANKMSVEKI--YQKKSQLEHILLRPDTYIGSVEPI-TETMWLMNRETNHMERREITY 80
+TP+ + E Y+KKS EH+LLRPDTYIG V +E +WL + E+ M +E++Y
Sbjct: 29 QTPSTSFASEAAVKYEKKSPTEHVLLRPDTYIGGVAMRESEIVWLRSLESKQMYTKEVSY 88
Query: 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
PGL KIFDEILVNA DNK RD MN +++ V+++T+ ISVWNNG G+PV H E ++V
Sbjct: 89 PPGLLKIFDEILVNAADNKSRDSNMNRLEVWVDRKTSRISVWNNGGGLPVEIHPSENIYV 148
Query: 141 PTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNI 200
PT++ FG+L TSSNY+D E K GGRNGYGAKLCNI
Sbjct: 149 PTLV-------------------------FGNLFTSSNYDDSEIKTVGGRNGYGAKLCNI 183
Query: 201 FSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI---KSGSKDDFTKITFTPDLTKFKMT 257
FS++F+VET S KK F+Q W +NM + EI ++ D+TK+ F PDL +F+M
Sbjct: 184 FSTEFIVETVDSRTKKKFRQRWFNNMKECDEAEIVDLQNEKTTDYTKVEFVPDLKRFQMD 243
Query: 258 SLDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKII 316
L D++DLI +R ++ A+ DV+V+LNG+K V F++YV+++ DP +
Sbjct: 244 CLSDDIIDLIGKRIFEVTATLPNDVQVYLNGQKCEVNGFEEYVRMFNYY-----DPSSFL 298
Query: 317 YENVNPRWEVAIAPSDRGF--------QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVV 368
+ + RW V +A + + VSFVN+I T KGG HVD V+D IV I
Sbjct: 299 FLHPTSRWHVGVAKRNTYIGDDQLILPKVVSFVNNINTEKGGTHVDYVMDKIVNVI---- 354
Query: 369 KKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINC 428
K L+D + G ++KP +KN++ IFINC
Sbjct: 355 ------------------------------KPLVDSRLAEFGKSVKPAMIKNNLSIFINC 384
Query: 429 LIVNPTFDSQTKENMTLQKGSFGST--C-------------------------------- 454
LI NP+F+SQTKE +T + FGS+ C
Sbjct: 385 LIENPSFESQTKETVTTKPKLFGSSFDCDHKKVTKWAEESGFVEEIVEEALNLKKKKVPA 444
Query: 455 ----------VPKLEDANDAG-TKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPL 503
+ KLEDA AG + S CTLILTEGDSAK+LA+SGL V+GR+ YGVFPL
Sbjct: 445 KRVTSSSVRDIVKLEDAEWAGISGKSEKCTLILTEGDSAKALALSGLEVLGRETYGVFPL 504
Query: 504 RGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDG 563
+GKL+NV + +N EI+N+++ILGL++ ++ T E M RYGRL+I+ DQD+DG
Sbjct: 505 KGKLVNVSNIDDVRASKNEEISNVMRILGLRFEEEAPTQESM---RYGRLLILADQDEDG 561
Query: 564 SHIKGLIINFIHHNWPTLLR-LPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNW 622
SHIKGL+INFIH WP+L+R F++ F TP++KA K + SF+S+ E+++W EET
Sbjct: 562 SHIKGLVINFIHKFWPSLIRSRDFIQSFRTPLLKAKKGDKVKSFFSINEYQKWAEETEG- 620
Query: 623 HTYKIKYYK 631
+KIKYYK
Sbjct: 621 -KWKIKYYK 628
Score = 95.9 bits (237), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 73/116 (62%), Gaps = 8/116 (6%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRG-EDPLPMKPWYKN 718
+EP W PIIP++LVNG EGIGTGW TKI N N +++D I+R I E ++P+Y++
Sbjct: 839 VEPRWLCPIIPLILVNGTEGIGTGWSTKIVNRNAIDVIDGIRRKIDSVEGEHEIQPYYED 898
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDK-------LEITELQVGKWTTDYKDTLDTLL 767
++G+I+ +F+ G+I + ++ +EI+EL + WT+ YK+ L ++
Sbjct: 899 YRGKIEAVTSKKFITTGKIHLSRPERKNASTFSIEISELPIEIWTSKYKEKLSKIV 954
>gi|290995679|ref|XP_002680410.1| DNA topoisomerase II [Naegleria gruberi]
gi|284094031|gb|EFC47666.1| DNA topoisomerase II [Naegleria gruberi]
Length = 1135
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 272/659 (41%), Positives = 384/659 (58%), Gaps = 123/659 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
S+E+ YQKK+ +EH+L RPDTY+GS E + + ++ ++ N+++ +E+ ++P LY+I DE
Sbjct: 9 SIEQQYQKKTPIEHVLERPDTYVGSTERMKKKLFCLD-SVNNIKLKEVDFIPALYRIIDE 67
Query: 91 ILVNACDNKQRD-PKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
ILVNA DN R N +++T+++ N I + NNGK +PV HK EK++VP ++F
Sbjct: 68 ILVNAVDNHHRKGTHTNELRVTIDEAKNWIHIRNNGKSVPVEMHKIEKIYVPELVF---- 123
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
G+LLT SN++D E K TGGRNGYGAKL NIFS+ F +E
Sbjct: 124 ---------------------GNLLTGSNFDDNEVKFTGGRNGYGAKLANIFSTDFTIE- 161
Query: 210 SCSEYKKS-FKQVWKDNMSKVTSPEIKSGSK--DDFTKITFTPDLTKFKMTSLDK--DMV 264
++K + + Q WK NMS++++P I + + + +++F PD KF+ T L+K +M+
Sbjct: 162 -IMDHKGTHYIQNWKKNMSQISTPTIVENKQKTEPYIQVSFHPDFKKFQSTGLNKELNMI 220
Query: 265 DLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKI-IYENVNPR 323
DL+ RR YD +A + V+LN +K+ V NF++YVKL+ P K+ +++++
Sbjct: 221 DLLKRRIYDLSACNPKLNVYLNDKKVEVDNFKEYVKLFYQNNSSGEHPEKMFVHKHICDG 280
Query: 324 WEVAIAPS-DRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
WE+AI S F Q+SFVNSIAT +GG HV+ V++ + +I E + K DL TI
Sbjct: 281 WEIAIGASVGEEFNQISFVNSIATVQGGSHVNFVLNQLSTKISEYIAKTYTDLQLTI--- 337
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
P+ V+NHI +FIN LI NPTFDSQTKE
Sbjct: 338 -------------------------------SPYMVRNHITLFINSLIENPTFDSQTKET 366
Query: 443 MTLQKGSFGSTCV--------------------------------------------PKL 458
+T + SF V PKL
Sbjct: 367 LTTKSISFAQKVVISNDLINSIANHTPIIDNIIAFANYKQSSASSKKFKKRESKLLIPKL 426
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
+DAN AGT S++C LILTEGDSAK+LA+SGL VVGRD++GVFPL+GKLLNVREA+ QI
Sbjct: 427 DDANLAGTNRSMECVLILTEGDSAKALAISGLSVVGRDRFGVFPLKGKLLNVREASADQI 486
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDM-KTLRYGRLMIMTDQDQDGSHIKGLIINFIHHN 577
+N EI NL KILGL K + E++ K LRYG++M+M DQD DGSHIKGL++N IH
Sbjct: 487 RDNQEIQNLKKILGLDDVSKTDSFEELTKRLRYGKVMLMCDQDHDGSHIKGLLLNMIHFF 546
Query: 578 WPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEW-----KEETTNWHTYKIKYYK 631
+P LLR F++EFITPIIK +K + SF+S+PEF+ W + E W+ KYYK
Sbjct: 547 YPELLRNNFVDEFITPIIKVSKGSDVKSFFSIPEFQNWWTKVPENEKNRWNQ---KYYK 602
Score = 96.3 bits (238), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 75/118 (63%), Gaps = 10/118 (8%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIR------GEDPLP-M 712
IEP++Y+PIIPM+LVNGAEG+GTGW T IP+ NP +++D++ ++ G LP +
Sbjct: 811 IEPKFYLPIIPMLLVNGAEGMGTGWSTSIPSFNPIDLIDSLNILLDSNAENIGNVKLPSL 870
Query: 713 KPWYKNFKGEIDYCGDSRFVVNGEIAIL---DDDKLEITELQVGKWTTDYKDTLDTLL 767
W + FKG+I+ +F+ G + D + +I+EL +G+WT +YK L +L+
Sbjct: 871 DMWARGFKGKIEMNDSGKFISKGIFKMKSRGDSIEFDISELPIGEWTENYKSHLQSLV 928
>gi|392895790|ref|NP_741252.2| Protein R05D3.12, isoform a [Caenorhabditis elegans]
gi|374095516|sp|P34534.5|TOP2M_CAEEL RecName: Full=Putative DNA topoisomerase 2, mitochondrial;
Short=DNA topoisomerase II; Flags: Precursor
gi|351064711|emb|CCD73199.1| Protein R05D3.12, isoform a [Caenorhabditis elegans]
Length = 1170
Score = 479 bits (1232), Expect = e-131, Method: Compositional matrix adjust.
Identities = 276/657 (42%), Positives = 372/657 (56%), Gaps = 132/657 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPIT-ETMWLMNRETNHMERREITYVPGLYKIFDEILVN 94
Y+KKS EH+LLRPDTYIG V + +WL + E M +E+TY PGL KIFDEILVN
Sbjct: 47 YEKKSPTEHVLLRPDTYIGGVAMREDQIIWLRDSENRKMIAKEVTYPPGLLKIFDEILVN 106
Query: 95 ACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
A DNK RD MN +++ +++ET ISVWNNG G+PV H E ++VPT++
Sbjct: 107 AADNKARDSSMNRLEVWLDRETARISVWNNGSGLPVEIHPTEGIYVPTLV---------- 156
Query: 155 NDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEY 214
FG+L TSSNY+D E K GGRNGYGAKLCNIFS +F+VET +
Sbjct: 157 ---------------FGNLFTSSNYDDSEIKTVGGRNGYGAKLCNIFSKEFIVETVDTRI 201
Query: 215 KKSFKQVWKDNMSKVTSPE---IKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRA 271
K+ F+Q W DNM K E I + D+TK+ F PDL +F++ L D++DLI RR
Sbjct: 202 KRRFRQKWYDNMKKCNEAEVVEILDETVKDYTKVEFVPDLERFQIDKLSDDVIDLIGRRV 261
Query: 272 YDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAP 330
++ AA+ +DV V+LNG+K V F+DYVK++ D +++ + PRW V +A
Sbjct: 262 FEVAATLPRDVDVYLNGQKCDVDGFEDYVKMFNDSSS-------LLFLHPTPRWHVGVAK 314
Query: 331 SDRGFQQ--------VSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
+ F + VSFVN+I T KGG HVD V+D IV I +V K D
Sbjct: 315 RNNFFGESHVVLPKIVSFVNNINTEKGGSHVDYVMDKIVNIIKPIVDSKLGD-------- 366
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
++KP +KN++ IFINCLI NP+F+SQTKE
Sbjct: 367 --------------------------PTKSVKPAVIKNNLSIFINCLIENPSFESQTKET 400
Query: 443 MTLQKGSFGST--C------------------------------------------VPKL 458
+T + +FGS C + KL
Sbjct: 401 LTTKAKNFGSIFECDAKKTAEWAEQSGLIEDIVEEVLNMKKKKLPGKRVSVSSVRDIVKL 460
Query: 459 EDANDAGTKNSID-CTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQ 517
EDA AG + + CTLILTEGDSAK+LA++GL V+GR+ YGVFPL+GKLLNV +
Sbjct: 461 EDAEWAGITGTAEKCTLILTEGDSAKALALAGLEVLGRETYGVFPLKGKLLNVSNLDDAR 520
Query: 518 ILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHN 577
+N EI+NL++ILGL++ + + +LRYGRL+I+ DQD+DGSHIKGLI+NFIH
Sbjct: 521 ASKNEEISNLLRILGLKFEDSNSITRE--SLRYGRLLILADQDEDGSHIKGLIVNFIHKF 578
Query: 578 WPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWK--EETTNWHTYKIKYYK 631
WP+L+ F++ F TP++KA K + SF+S+ E+ +W EE W KIKYYK
Sbjct: 579 WPSLVHTDGFIQSFRTPLLKAKKGDKVRSFFSMNEYRKWADVEEGGKW---KIKYYK 632
Score = 99.8 bits (247), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 76/118 (64%), Gaps = 12/118 (10%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRG---EDPLPMKPWY 716
+EP W PI+P++L+NG EGIGTGW TKI N NP +I+D I+R I E +P P+Y
Sbjct: 844 VEPTWLCPIVPLILINGTEGIGTGWSTKIANRNPIDIIDMIRRKIDSISTEYEIP--PFY 901
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDK-------LEITELQVGKWTTDYKDTLDTLL 767
+ F+G+++ ++F+ +G+I ++ ++ +EI EL +G WT+ YK+ L ++
Sbjct: 902 EEFRGKLEVVTPTKFISSGKIQLIRPERKNASTFSIEIVELPIGIWTSKYKEKLSKIV 959
>gi|325191142|emb|CCA25924.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 1141
Score = 475 bits (1223), Expect = e-130, Method: Compositional matrix adjust.
Identities = 262/646 (40%), Positives = 363/646 (56%), Gaps = 128/646 (19%)
Query: 52 YIGSVEPITETMWLMNRETN----HMERREITYVPGLYKIFDEILVNACDNKQRDPKMNC 107
YIGS+E +TE +W++N T M I YVP LYKIFDEI+VNA DNK+RD KM
Sbjct: 2 YIGSMEEVTENVWVVNENTVGNIVEMYLESIEYVPALYKIFDEIIVNALDNKKRDCKMKA 61
Query: 108 IKI---TVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGV 164
+ + T N++ I ++N+G+GIPV H E++++P ++FG+
Sbjct: 62 LDVVIDTTNEKQPWIMIYNDGRGIPVQIHPTEQIYIPELVFGN----------------- 104
Query: 165 VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKD 224
LLT SN++D + TGGR+GYGAKL NIFS+ F+VET + +KQ+W++
Sbjct: 105 --------LLTGSNFDDHSTRFTGGRHGYGAKLTNIFSNTFIVETGDTVTGMKYKQIWRN 156
Query: 225 NMSKVTSPEIK--SGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVK 282
NM ++ P I+ S D+T+I+F+PDL F++ SL D++ L+ +R YD A DVK
Sbjct: 157 NMRELEEPHIEPLSAGVKDYTRISFSPDLKLFQLESLSTDILRLLKKRVYDVAGCVDDVK 216
Query: 283 VFLNGEKLPVKNFQDYVKLYTDRQD---EDGDPVKIIYENVNPRWEVAIAPSDRGFQQVS 339
V LNG +P+ F+ Y++ + Q G+ + VN W + + PS+ GF QVS
Sbjct: 217 VSLNGSVIPISGFESYIRGFEFHQKLSTTKGNS-NCVTSRVNKHWHIGVLPSEVGFTQVS 275
Query: 340 FVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAK 399
FVN I+T +GG HV VV+ I +++ + + KK ++ T
Sbjct: 276 FVNGISTLRGGTHVLHVVEQITRRVADHIVKKYSEINAT--------------------- 314
Query: 400 TLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC----- 454
P QVK ++ ++INC+I NPTFDSQ KE +T + SFG+ C
Sbjct: 315 ---------------PAQVKPYLAVYINCMIENPTFDSQMKECLTSRPSSFGTLCNLPER 359
Query: 455 -----------------------------------------VPKLEDANDAGTKNSIDCT 473
VPKLEDAN AG S +C+
Sbjct: 360 FFKAVIRDTGIVEHTVQGIRSKQRSALMKKVSTARSKSIFNVPKLEDANLAGGSQSHECS 419
Query: 474 LILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGL 533
LILTEGDSAK+LAV+GL VVGRD++GVFPLRGKLLNVR+AT Q+ +N+E NL ILGL
Sbjct: 420 LILTEGDSAKALAVAGLAVVGRDRFGVFPLRGKLLNVRDATVNQLSKNSEFMNLCTILGL 479
Query: 534 QYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFIT 592
Q + Y T++ + LRYG +++MTDQD DGSHIKGL+ N H WP LLR F++ F+T
Sbjct: 480 QMGESYDTIKKRQQLRYGHVIVMTDQDYDGSHIKGLLFNIFHTFWPNLLRSSEFIQVFVT 539
Query: 593 PIIKATKAREE-----LSFYSLPEFEEWKEE--TTNWHTYKIKYYK 631
PIIKAT R+ LSFYSLPE+ +W++ Y IKYYK
Sbjct: 540 PIIKATSKRDSKHEKVLSFYSLPEYLDWRKSLAANEGKNYYIKYYK 585
Score = 119 bits (297), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 72/115 (62%), Gaps = 7/115 (6%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMI-------RGEDPLPM 712
+EP++Y+PIIPM+L+NG+EGIGTGW T IPNHNP E++D + ++ G P +
Sbjct: 796 VEPQYYVPIIPMLLINGSEGIGTGWSTYIPNHNPIEVIDRMLHLLDSSNSRDHGVPPASL 855
Query: 713 KPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
PW++ F+G I+ G + G I L+ LEI EL +GKW DYK TL L
Sbjct: 856 LPWFRGFRGSIEAAGLQTYTTQGTIRHLNPTTLEILELPIGKWIDDYKKTLWDFL 910
Score = 57.4 bits (137), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 846 EDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
++P D+DYLL M+ WS T+++ N L K+ +++TEL L+K P ++W +L LR K
Sbjct: 1064 DNPASDFDYLLNMSMWSFTLDKANRLEKEHLERLTELRKLQKTTPEEMWRRELLTLRGK 1122
>gi|341896211|gb|EGT52146.1| hypothetical protein CAEBREN_13599 [Caenorhabditis brenneri]
Length = 1168
Score = 474 bits (1220), Expect = e-130, Method: Compositional matrix adjust.
Identities = 275/661 (41%), Positives = 375/661 (56%), Gaps = 138/661 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPI-TETMWLMNRETNHMERREITYVPGLYKIFDEILVN 94
Y+KKS EH+LLRPDTYIG V ET+W+ + + +E+TY PGL KIFDEILVN
Sbjct: 46 YEKKSPTEHVLLRPDTYIGGVAMREIETVWIKTPGSRRISPKEVTYPPGLLKIFDEILVN 105
Query: 95 ACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
A DNK RDP MN +++ +++ET+ ISVWNNG G+PV H E ++VPT++
Sbjct: 106 AADNKSRDPTMNRLEVWLDRETSRISVWNNGGGLPVEIHPTEGIYVPTLV---------- 155
Query: 155 NDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEY 214
FG+L TSSNYND E K GGRNGYGAKLCNIFS +F+VET ++
Sbjct: 156 ---------------FGNLFTSSNYNDNEIKTVGGRNGYGAKLCNIFSKEFIVETVDTKT 200
Query: 215 KKSFKQVWKDNMSKVTSPEIKSGSKD---DFTKITFTPDLTKFKMTSLDKDMVDLITRRA 271
K+ F+Q W +NM + ++ + + D+TK+ F PDL +F++ L D+VDLI +R
Sbjct: 201 KRRFRQRWYNNMKECDEAVVEKFTDENITDYTKVEFVPDLQRFQIQHLADDIVDLIGKRV 260
Query: 272 YDAAASTK-DVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAP 330
++ AA+ +V VFLNG+K V F+DYVK++ D DP ++ + RW V +A
Sbjct: 261 FEVAATLPPNVDVFLNGQKCDVDGFEDYVKMFND-----SDPSSFLFLHPTSRWHVGVAK 315
Query: 331 SDRGF-------------QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGC 377
R F + +SFVN+I T KGG HVD V+D IV
Sbjct: 316 --RNFFTGENNENQVTLPKVMSFVNNINTEKGGSHVDYVMDKIV---------------- 357
Query: 378 TIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDS 437
+ K ID ++ G ++KP VKN++ +FINCLI NP+F+S
Sbjct: 358 ------------------NILKPHIDAKLKESGKSVKPAIVKNNLSLFINCLIENPSFES 399
Query: 438 QTKENMTLQKGSFGST--C----------------------------------------- 454
QTKE +T + +FGST C
Sbjct: 400 QTKETVTTKPKNFGSTFDCDTRKLANWAEESGLIDSIVDEVLSAKNKKPASKLKNSATSV 459
Query: 455 --VPKLEDANDAGTKNSID-CTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVR 511
+ KLEDA AGT D CTLILTEGDSAK+LA++GL V+GR+ YGVFPL+GKLLNV
Sbjct: 460 RDIVKLEDAEWAGTPGKADKCTLILTEGDSAKALALAGLEVLGRETYGVFPLKGKLLNVS 519
Query: 512 EATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLII 571
++ +N EI+NL++ILGL + + RYGRL+I+ DQD+DGSHIKGL+I
Sbjct: 520 NLDEIRVSKNEEISNLIRILGLSFDDPEPSF-----TRYGRLLILADQDEDGSHIKGLVI 574
Query: 572 NFIHHNWPTLLRL-PFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYY 630
NFIH WP+L+ F++ F TP++KA K E SF+S+ E+ +W E T +K+KYY
Sbjct: 575 NFIHKFWPSLIHSGDFIQSFRTPLLKAKKGDEVKSFFSMNEYRKWSE--TAEGKWKVKYY 632
Query: 631 K 631
K
Sbjct: 633 K 633
Score = 94.4 bits (233), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 73/118 (61%), Gaps = 12/118 (10%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGE---DPLPMKPWY 716
+EP W PIIP++LVNG EGIGTGW TKI N +++D I+R I + D +P P+Y
Sbjct: 843 VEPNWLCPIIPLILVNGTEGIGTGWSTKIANRKTIDVIDLIRRKIDFDELTDEIP--PFY 900
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDK-------LEITELQVGKWTTDYKDTLDTLL 767
++KG I+ ++F +G + ++ ++ ++ITEL +G WT+ YK+ L ++
Sbjct: 901 DDYKGRIEVVTPTKFFSSGRVQLIRPERKNASTFSIDITELPIGVWTSKYKEKLSRIV 958
>gi|630594|pir||S44861 DNA topoisomerase II - Caenorhabditis elegans
Length = 2434
Score = 472 bits (1215), Expect = e-129, Method: Compositional matrix adjust.
Identities = 273/653 (41%), Positives = 368/653 (56%), Gaps = 132/653 (20%)
Query: 40 SQLEHILLRPDTYIGSVEPI-TETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDN 98
S EH+LLRPDTYIG V + +WL + E M +E+TY PGL KIFDEILVNA DN
Sbjct: 1303 SPTEHVLLRPDTYIGGVAMREDQIIWLRDSENRKMIAKEVTYPPGLLKIFDEILVNAADN 1362
Query: 99 KQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEE 158
K RD MN +++ +++ET ISVWNNG G+PV H E ++VPT++
Sbjct: 1363 KARDSSMNRLEVWLDRETARISVWNNGSGLPVEIHPTEGIYVPTLV-------------- 1408
Query: 159 DKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSF 218
FG+L TSSNY+D E K GGRNGYGAKLCNIFS +F+VET + K+ F
Sbjct: 1409 -----------FGNLFTSSNYDDSEIKTVGGRNGYGAKLCNIFSKEFIVETVDTRIKRRF 1457
Query: 219 KQVWKDNMSKVTSPE---IKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
+Q W DNM K E I + D+TK+ F PDL +F++ L D++DLI RR ++ A
Sbjct: 1458 RQKWYDNMKKCNEAEVVEILDETVKDYTKVEFVPDLERFQIDKLSDDVIDLIGRRVFEVA 1517
Query: 276 AST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRG 334
A+ +DV V+LNG+K V F+DYVK++ D +++ + PRW V +A +
Sbjct: 1518 ATLPRDVDVYLNGQKCDVDGFEDYVKMFNDSS-------SLLFLHPTPRWHVGVAKRNNF 1570
Query: 335 FQQ--------VSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNK 386
F + VSFVN+I T KGG HVD V+D IV I +V K D
Sbjct: 1571 FGESHVVLPKIVSFVNNINTEKGGSHVDYVMDKIVNIIKPIVDSKLGD------------ 1618
Query: 387 FNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ 446
++KP +KN++ IFINCLI NP+F+SQTKE +T +
Sbjct: 1619 ----------------------PTKSVKPAVIKNNLSIFINCLIENPSFESQTKETLTTK 1656
Query: 447 KGSFGST--C------------------------------------------VPKLEDAN 462
+FGS C + KLEDA
Sbjct: 1657 AKNFGSIFECDAKKTAEWAEQSGLIEDIVEEVLNMKKKKLPGKRVSVSSVRDIVKLEDAE 1716
Query: 463 DAGTKNSID-CTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILEN 521
AG + + CTLILTEGDSAK+LA++GL V+GR+ YGVFPL+GKLLNV + +N
Sbjct: 1717 WAGITGTAEKCTLILTEGDSAKALALAGLEVLGRETYGVFPLKGKLLNVSNLDDARASKN 1776
Query: 522 AEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTL 581
EI+NL++ILGL++ + + +LRYGRL+I+ DQD+DGSHIKGLI+NFIH WP+L
Sbjct: 1777 EEISNLLRILGLKFEDSNSITRE--SLRYGRLLILADQDEDGSHIKGLIVNFIHKFWPSL 1834
Query: 582 LRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWK--EETTNWHTYKIKYYK 631
+ F++ F TP++KA K + SF+S+ E+ +W EE W KIKYYK
Sbjct: 1835 VHTDGFIQSFRTPLLKAKKGDKVRSFFSMNEYRKWADVEEGGKW---KIKYYK 1884
Score = 90.5 bits (223), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 75/118 (63%), Gaps = 13/118 (11%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRG---EDPLPMKPWY 716
+EP PI+P++L+NG EGIGTGW TKI N NP +I+D I+R I E +P P+Y
Sbjct: 2094 VEPT-LCPIVPLILINGTEGIGTGWSTKIANRNPIDIIDMIRRKIDSISTEYEIP--PFY 2150
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDK-------LEITELQVGKWTTDYKDTLDTLL 767
+ F+G+++ ++F+ +G+I ++ ++ +EI EL +G WT+ YK+ L ++
Sbjct: 2151 EEFRGKLEVVTPTKFISSGKIQLIRPERKNASTFSIEIVELPIGIWTSKYKEKLSKIV 2208
>gi|301120494|ref|XP_002907974.1| DNA topoisomerase 2 DNA gyrase B [Phytophthora infestans T30-4]
gi|262103005|gb|EEY61057.1| DNA topoisomerase 2 DNA gyrase B [Phytophthora infestans T30-4]
Length = 1329
Score = 471 bits (1211), Expect = e-129, Method: Compositional matrix adjust.
Identities = 272/643 (42%), Positives = 346/643 (53%), Gaps = 145/643 (22%)
Query: 73 MERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITV------NQETNTISVWNNGK 126
M+++ + YVP LYKIFDEI+VNA DNK RDP M + + + N ISV+N+GK
Sbjct: 17 MKQQAVEYVPALYKIFDEIIVNAVDNKVRDPSMRHLDVIIEPGSKANGYRPWISVYNDGK 76
Query: 127 GIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKV 186
GIPV HK EK++VP ++ G HLLT SN++D ++
Sbjct: 77 GIPVKFHKTEKVYVPELVLG-------------------------HLLTGSNFDDTAARL 111
Query: 187 TGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGS-KD--DFT 243
TGGR+GYGAKL NIFS +FVVET + +KQVW +NM PEI S KD DFT
Sbjct: 112 TGGRHGYGAKLTNIFSKEFVVETGDTSMGLRYKQVWHNNMRTRGEPEITEFSGKDAKDFT 171
Query: 244 KITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY- 302
K++F+PDL KF+M L M ++ +R YD A DV+V LNG+KLP+ F+ Y+K +
Sbjct: 172 KVSFSPDLEKFEMEKLTASMTRVLKKRVYDVAGCLSDVQVTLNGKKLPISGFESYIKTFR 231
Query: 303 ---------------TDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATT 347
D D IY VN RW++ + PSD GF QVSFVN ++
Sbjct: 232 YSTTNNPVSKTAKPSKDSDDAASSGSDYIYSRVNKRWKIGVLPSDVGFVQVSFVNGMSAL 291
Query: 348 KGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVR 407
+GG HV V D I +++ E V KK +L +
Sbjct: 292 RGGSHVGYVSDQICRRVAEHVNKKFPELSVSTA--------------------------- 324
Query: 408 LGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC------------- 454
QVK H+ IFINC I NPTFDSQ KE MT + +FGSTC
Sbjct: 325 ---------QVKPHMAIFINCQIENPTFDSQMKEFMTSRPPTFGSTCVLSERLLKLVLSD 375
Query: 455 ----------------------------------VPKLEDANDAGTKNSIDCTLILTEGD 480
VPKLEDAN AG S +C+LILTEGD
Sbjct: 376 SGIVERVVQSARARQRAALLKKVSSTRAKSSSVNVPKLEDANLAGGARSSECSLILTEGD 435
Query: 481 SAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYT 540
SAK+LAV+GL VVGRD+YGVFPLRGKLLNVR+AT Q+ +NAE +L ILGL+ + Y
Sbjct: 436 SAKALAVAGLAVVGRDQYGVFPLRGKLLNVRDATVAQLGKNAEFAHLCTILGLRMDEHYG 495
Query: 541 TVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR-LPFLEEFITPIIKAT- 598
T E + LRYGR++ MTDQD DGSHIKGL+ N H WP LL+ F+ EFITPIIK +
Sbjct: 496 TEEARQKLRYGRVIAMTDQDHDGSHIKGLLFNLFHTFWPELLKEGGFISEFITPIIKVSP 555
Query: 599 --------KAREELSFYSLPEFEEWKE--ETTNWHTYKIKYYK 631
+ E F+SLPE+ EWK ++ + Y IKYYK
Sbjct: 556 TSKRVGTERGLETRRFFSLPEYFEWKASIDSADLKHYVIKYYK 598
Score = 108 bits (271), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 71/117 (60%), Gaps = 9/117 (7%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGE---DPLP----- 711
+EP +Y+PIIPM+LVNGAEGIGTGW + IP H+P ++DN+ +++ E D L
Sbjct: 809 VEPVFYVPIIPMLLVNGAEGIGTGWSSSIPCHHPVLVIDNLLKLLDAEEAGDDLSIVELS 868
Query: 712 -MKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
M PW K F G+I G FV G + ++ + +TEL VGKW DYK L L+
Sbjct: 869 LMTPWAKGFSGDIRQTGKHSFVSRGNVEQVNTSTVRVTELPVGKWVEDYKKFLWDLV 925
Score = 45.1 bits (105), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 847 DPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALR 902
D +DYDYLL + S T E + L K+ D K +L L+ P LW ++L+ LR
Sbjct: 1105 DGSEDYDYLLNTSLMSFTKEFADRLRKEHDTKQDKLQQLQATTPAQLWRNELERLR 1160
>gi|10281018|dbj|BAB13750.1| type II DNA topoisomerase [Candida tropicalis]
Length = 782
Score = 467 bits (1201), Expect = e-128, Method: Compositional matrix adjust.
Identities = 279/627 (44%), Positives = 361/627 (57%), Gaps = 124/627 (19%)
Query: 70 TNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIP 129
T M +E+T VPGLYKIFDEILVNA DNK RDP M IK+ ++ E N I V N+GKGIP
Sbjct: 1 TESMVFKEVTIVPGLYKIFDEILVNAADNKIRDPSMKNIKVKIDPENNIIEVMNDGKGIP 60
Query: 130 VVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGG 189
V H E M++P +IF G+LLTSSNY+D + KVTGG
Sbjct: 61 VEMHTKENMYIPELIF-------------------------GNLLTSSNYDDNQKKVTGG 95
Query: 190 RNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITFT 248
RNG+GAK CNIFS++F VET+ K +KQ W DNM+ V+ P+I + SK ++TKITF
Sbjct: 96 RNGFGAKWCNIFSTQFEVETADLNTGKLYKQTWTDNMTNVSKPKITTLKSKKEYTKITFK 155
Query: 249 PDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT----- 303
PDL+KF M SLD D++ ++ RR YD + K ++LN ++L + +F+ YV++Y
Sbjct: 156 PDLSKFDMDSLDDDLLAVLRRRVYDLCGTVKSCNIYLNDKRLSISSFKSYVEMYVKAIRE 215
Query: 304 ---DRQDEDG---DPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVV 357
+ EDG + I++E N RWEVA A F QVSFVNSIATT GG HV V
Sbjct: 216 RSPEPLAEDGTLKNFTTIVHEVFNERWEVAFAVGHSTFNQVSFVNSIATTAGGTHVKYVS 275
Query: 358 DAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQ 417
D I+ ++++ TL + +KP +
Sbjct: 276 DQIINKLVD---------------------------------TLSKKEKGKKKLMIKPQE 302
Query: 418 VKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFG-----------------STCVPK--- 457
V++++++FINCLI NP F SQTKE +T + FG ++ V K
Sbjct: 303 VRDNMFLFINCLIENPAFTSQTKEQLTTKVSQFGGKEKFVAGDNLISRILKTSIVDKIRA 362
Query: 458 --------------------------LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLG 491
L DAN AGTK +CTLILTEG SA +LAV+GL
Sbjct: 363 IASANEDKALQKVDGSRKSRIKGQVSLVDANKAGTKLGHNCTLILTEGLSALNLAVAGLS 422
Query: 492 VVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYG 551
VVGRD YG FPLRGKLLNVREA+ QI +NAEIN L +I+GLQ+ K YT E++K LRYG
Sbjct: 423 VVGRDYYGCFPLRGKLLNVREASTDQISKNAEINALKQIIGLQHKKHYTA-ENIKQLRYG 481
Query: 552 RLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKAT-KAREE-----L 604
+MIMTDQDQDGSHIKGLIINF+ ++P LL +P FL EFITPI+K T K R +
Sbjct: 482 HIMIMTDQDQDGSHIKGLIINFLETSFPGLLEIPGFLLEFITPIVKVTVKTRGSGNNRVI 541
Query: 605 SFYSLPEFEEWKEETTNWHTYKIKYYK 631
FY++PEFE W++ + KYYK
Sbjct: 542 PFYTMPEFEAWRDGEGAECRWTHKYYK 568
>gi|268574422|ref|XP_002642188.1| Hypothetical protein CBG18156 [Caenorhabditis briggsae]
Length = 1206
Score = 465 bits (1197), Expect = e-127, Method: Compositional matrix adjust.
Identities = 271/657 (41%), Positives = 372/657 (56%), Gaps = 132/657 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPI-TETMWLMNRETNHMERREITYVPGLYKIFDEILVN 94
Y+KKS EH+LLRPDTYIG V ++ +W+ N ET M +E++Y PGL KIFDEILVN
Sbjct: 46 YEKKSPTEHVLLRPDTYIGGVAMRESQFVWIRNSETRRMFTKEVSYPPGLLKIFDEILVN 105
Query: 95 ACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
A DNK RDP MN +++ +++ET+ I+VWNNG +PV H E ++VPT++FG L TSSN
Sbjct: 106 AADNKSRDPSMNRLEVWLDRETSRIAVWNNGSALPVEIHPTEGVYVPTLVFGSLFTSSN- 164
Query: 155 NDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEY 214
Y+D E + GGRNGYGAKLCNIFS +FVVE S
Sbjct: 165 ------------------------YDDNEIRTVGGRNGYGAKLCNIFSDEFVVEAVDSRT 200
Query: 215 KKSFKQVWKDNMSKVTSPEIKSGSK---DDFTKITFTPDLTKFKMTSLDKDMVDLITRRA 271
K+ FKQ W NM + I+ + D+TK+ F PDL +F + L +D++DLI +R
Sbjct: 201 KRKFKQRWYHNMREFDEAVIEDLTNQQLSDYTKVEFVPDLKRFHIDKLSEDIIDLIGKRV 260
Query: 272 YDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAP 330
++ AA+ DV+VF NG+K V F+DYV+++ D +P ++ + RW V +A
Sbjct: 261 FEVAATLPSDVQVFFNGQKCDVDGFEDYVRMFN-----DSNPSSFLFLHPTSRWHVGVAK 315
Query: 331 ----SDRGF----QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
S G + VSFVN+I T KGG HVD V+D IV
Sbjct: 316 RNTFSGEGIVTLPKVVSFVNNINTEKGGSHVDYVMDKIV--------------------- 354
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLG--GMALKPFQVKNHIWIFINCLIVNPTFDSQTK 440
+ K L+D RLG ++KP +KN+I +FINCLI NP+F+SQTK
Sbjct: 355 -------------NVMKPLVD--SRLGDPSKSVKPATIKNNISLFINCLIENPSFESQTK 399
Query: 441 ENMTLQKGSFGST--C------------------------------------------VP 456
E +T + FGS+ C +
Sbjct: 400 ETVTTKPKQFGSSFDCDSEKISKWAETSGLLDEIVDEVLNTKKKKISSKRANSSSVRDIV 459
Query: 457 KLEDANDAGT-KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATH 515
KLEDA AG S CTLILTEGDSAK+LA++GL ++GR YGVFPL+GKL+NV
Sbjct: 460 KLEDAEWAGVPGKSEKCTLILTEGDSAKALALAGLEILGRQTYGVFPLKGKLVNVSNLDD 519
Query: 516 KQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIH 575
+ +N EI +V+ILGL +++ + E ++RYGRL+I+TDQD+DGSHIKGL+INFIH
Sbjct: 520 IRASKNEEIGKIVRILGLNFNEPTPSKE---SIRYGRLLILTDQDEDGSHIKGLVINFIH 576
Query: 576 HNWPTLLRL-PFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
WP+L++ F++ F TP++KA K E + F+SL E+ +W E +K+KYYK
Sbjct: 577 KFWPSLIQSGEFIKSFRTPLLKAKKGNEVVPFFSLNEYRKWAETIEG--KWKVKYYK 631
Score = 95.5 bits (236), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 74/117 (63%), Gaps = 9/117 (7%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPL--PMKPWYK 717
+EP PIIP++LVNG EGIGTGW TK+ N NP +++D I+R I + + P+Y+
Sbjct: 877 VEPNTLCPIIPLILVNGTEGIGTGWSTKVANRNPVDVIDMIRRKIDLSSLVVNEIPPFYE 936
Query: 718 NFKGEIDYCGDSRFVVNGEIAILDDDK-------LEITELQVGKWTTDYKDTLDTLL 767
++KG+I+ ++F+ G+I I ++ +EI+EL +G WT+ YK+ L +L
Sbjct: 937 DYKGKIEIVTPTKFISTGKIKISRPERKNASTFSVEISELPIGVWTSKYKEKLSNIL 993
>gi|402582849|gb|EJW76794.1| hypothetical protein WUBG_12295, partial [Wuchereria bancrofti]
Length = 379
Score = 461 bits (1186), Expect = e-126, Method: Compositional matrix adjust.
Identities = 232/413 (56%), Positives = 275/413 (66%), Gaps = 76/413 (18%)
Query: 226 MSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFL 285
M+K P + S +DFT+ITF PDL KF+MT LD D++ LI+RRAYD A STK VKV+L
Sbjct: 1 MTKDKDPFVSKSSGEDFTRITFKPDLAKFRMTELDDDIISLISRRAYDVAGSTKGVKVYL 60
Query: 286 NGEKLPVKNFQDYVKLYTDRQ-DEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSI 344
NG+ LPV+ F+ YV Y D DG+P K+ YE N RWEVA+ S++GFQQVSFVNSI
Sbjct: 61 NGKLLPVQGFKQYVDQYAKHNLDNDGEPYKVAYEQANERWEVALTVSEKGFQQVSFVNSI 120
Query: 345 ATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDI 404
ATTKGGRHVD V D I ++I+ +KKK
Sbjct: 121 ATTKGGRHVDYVADQITAKLIDTIKKK--------------------------------- 147
Query: 405 GVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC---------- 454
V G+ +KPFQ+K+H+WIF+N L+ NPTFDSQTKE MTLQ SFGS C
Sbjct: 148 -VGKSGVNVKPFQIKSHMWIFVNSLVENPTFDSQTKETMTLQAKSFGSKCELSERFINAV 206
Query: 455 -------------------------------VPKLEDANDAGTKNSIDCTLILTEGDSAK 483
+PKLEDANDAGTKNS CTLILTEGDSAK
Sbjct: 207 MKCGIVEAVLAWVRFKQQETLDKKCSSKKPGIPKLEDANDAGTKNSSLCTLILTEGDSAK 266
Query: 484 SLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVE 543
SLAVSGLGVVGRD+YGVFPLRGK+LNVRE +HKQI+ENAEIN L+KI+GLQY KY E
Sbjct: 267 SLAVSGLGVVGRDRYGVFPLRGKMLNVREGSHKQIMENAEINALIKIIGLQYRLKYDKDE 326
Query: 544 DMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIK 596
DMKTLRYG++M+M DQDQDGSHIKGL+INFIH+NWP L+R F+EEFITPI+K
Sbjct: 327 DMKTLRYGKIMVMADQDQDGSHIKGLVINFIHYNWPVLIRRNFVEEFITPIVK 379
>gi|348677326|gb|EGZ17143.1| hypothetical protein PHYSODRAFT_559851 [Phytophthora sojae]
Length = 1340
Score = 461 bits (1185), Expect = e-126, Method: Compositional matrix adjust.
Identities = 264/646 (40%), Positives = 343/646 (53%), Gaps = 148/646 (22%)
Query: 73 MERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITV------NQETNTISVWNNGK 126
M+++ + YVP LYKIFDEI+VNA DNK RDP M + + + N ISV+N+GK
Sbjct: 17 MKQQAVEYVPALYKIFDEIIVNAVDNKVRDPSMRHLDVVIEPGNKANGYRPWISVYNDGK 76
Query: 127 GIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKV 186
GIPV HK EK++VP ++ G HLLT SN++D ++
Sbjct: 77 GIPVKFHKTEKVYVPELVLG-------------------------HLLTGSNFDDTAARL 111
Query: 187 TGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGS---KDDFT 243
TGGR+GYGAKL NIFS++FVVET + +KQVW DNM PEI + DFT
Sbjct: 112 TGGRHGYGAKLTNIFSTEFVVETGDTSTGLRYKQVWHDNMRTRGEPEITEFTGKEAKDFT 171
Query: 244 KITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT 303
K++F+PDL +F+M L M ++ +R YD A DV+V LNG+K+P+ F+ Y+K +
Sbjct: 172 KVSFSPDLERFEMEKLTASMARVLKKRVYDVAGCLSDVEVTLNGKKVPISGFESYIKAFC 231
Query: 304 D-------------------RQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSI 344
+ +Y VN RWE+ + PSD GF QVSFVN +
Sbjct: 232 HSTTTSPASKATKSNAASKDSDSKASSGADYMYSRVNKRWEIGVLPSDVGFVQVSFVNGM 291
Query: 345 ATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDI 404
+ +GG HV V D I +++ E V KK +L +
Sbjct: 292 SALRGGSHVGYVSDQICRRVAEHVNKKYPELSVSTA------------------------ 327
Query: 405 GVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC---------- 454
QVK H+ IFINC I NPTFDSQ KE M+ + ++GSTC
Sbjct: 328 ------------QVKPHMAIFINCQIENPTFDSQMKEYMSSRPPTYGSTCALSERLLKLV 375
Query: 455 -------------------------------------VPKLEDANDAGTKNSIDCTLILT 477
VPKLEDAN AG S +C+LILT
Sbjct: 376 ISDSGIVERVVQSARARQRAALLKKVSSTRAKSTSVNVPKLEDANLAGGPRSSECSLILT 435
Query: 478 EGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSK 537
EGDSAK+LAV+GL VVGRD+YGVFPLRGKLLNVR+AT Q+ +NAE +L ILGL+ +
Sbjct: 436 EGDSAKALAVAGLAVVGRDQYGVFPLRGKLLNVRDATVAQLGKNAEFAHLCTILGLRMDE 495
Query: 538 KYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR-LPFLEEFITPIIK 596
Y T E + LRYGR++ MTDQD DGSHIKGL+ N H WP LL+ F+ EFITPIIK
Sbjct: 496 HYGTEEARQKLRYGRVIAMTDQDHDGSHIKGLLFNLFHTFWPELLKEGGFISEFITPIIK 555
Query: 597 AT---------KAREELSFYSLPEFEEWKE--ETTNWHTYKIKYYK 631
+ + E F+SLPE+ EWK + + Y IKYYK
Sbjct: 556 VSPTSKRVGTERGLETRRFFSLPEYFEWKAALDPADLKYYTIKYYK 601
Score = 112 bits (281), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 70/117 (59%), Gaps = 9/117 (7%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP---------L 710
+EP +Y+PIIPM+LVNGAEGIGTGW + IP H+P ++DN+ R++ E+
Sbjct: 812 VEPVYYVPIIPMLLVNGAEGIGTGWSSSIPCHHPVVVIDNLLRLLDAEEAGDDQSKVELA 871
Query: 711 PMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
M PW K F G+I G FV G + ++ L +TEL VGKW DYK L L+
Sbjct: 872 SMTPWTKGFSGDIRQTGKHSFVSRGNVQQVNTSTLRVTELPVGKWVEDYKKFLWDLV 928
Score = 45.4 bits (106), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%)
Query: 845 EEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALR 902
E D DYDYLL + S T E + L K+ D K +L L+ P LW +L+ LR
Sbjct: 1110 EADGSDDYDYLLNTSLMSFTKEFTDRLQKEHDTKQEKLQQLQATTPAQLWRSELERLR 1167
>gi|325089309|gb|EGC42619.1| DNA topoisomerase II [Ajellomyces capsulatus H88]
Length = 1712
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 243/522 (46%), Positives = 315/522 (60%), Gaps = 94/522 (18%)
Query: 165 VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKD 224
+P ++FGHLL+SSNY+D + KVTGGRNGYGAKLCNIFS++F +ET+ S+ KK +KQ W D
Sbjct: 146 IPELVFGHLLSSSNYDDNQQKVTGGRNGYGAKLCNIFSTEFTLETADSKLKKKYKQTWTD 205
Query: 225 NMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVF 284
NMSK+ P+I DD+TK+TF PD KF M +D D L+ RR YD A + K V V
Sbjct: 206 NMSKMGKPKITDCKGDDYTKVTFIPDFKKFGMDGIDDDFEALVKRRVYDLAGTCK-VTVK 264
Query: 285 LNGEKLPVKNFQDYVKLYTDR------QDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQV 338
LNG ++P++NF+ Y+++YT+ ++ D +II +N +PRWE+ A SD FQQV
Sbjct: 265 LNGSRIPIRNFKQYMQMYTNAIKKERGEEASKDKSEIITDNPDPRWEIGFAVSDGSFQQV 324
Query: 339 SFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMA 398
SFVNSIATT GG HV++V D I +++E VKKKNK
Sbjct: 325 SFVNSIATTSGGSHVNSVADQICNKLVEAVKKKNKT------------------------ 360
Query: 399 KTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTCV--- 455
G LKP Q++NHI++F+N IVNP F SQTKE +T + FGS CV
Sbjct: 361 -----------GATLKPAQIRNHIFVFVNAQIVNPAFTSQTKEQLTTKPSQFGSKCVLSD 409
Query: 456 ----------------------------------------PKLEDANDAGTKNSIDCTLI 475
PKL DAN AGTK CTLI
Sbjct: 410 EFLKKILKTQVMENILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAGTKEGHHCTLI 469
Query: 476 LTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQY 535
LTEGDSAK LA++G +VG D +GVFPLRGKLLNVR+A+ QI +NAEI N+ LGLQ+
Sbjct: 470 LTEGDSAKGLAMAGRAIVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQNIKNFLGLQH 529
Query: 536 SKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPI 594
K+YT D K LRYG LMIMTDQD DGSHIKGL+INF +P+LL++P FL EFITPI
Sbjct: 530 KKEYT---DTKGLRYGHLMIMTDQDHDGSHIKGLLINFFQVAFPSLLKIPQFLIEFITPI 586
Query: 595 IKATKAREE-----LSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+K K + F+++ E++ W+E + ++ KYYK
Sbjct: 587 VKVWKGDPKNPTISKVFFTMQEYKTWQEIHGHDKRWEKKYYK 628
Score = 139 bits (350), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 84/113 (74%), Gaps = 1/113 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y P++PM+L+NGAEGIGTGW T IPN+NP EIV N+KR++ GE +PM+PW++ F
Sbjct: 838 IEPEIYFPVVPMILINGAEGIGTGWSTSIPNYNPEEIVANLKRLMAGEPLVPMEPWFRGF 897
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
GE+ G R+ +G I+ + D+++EITEL + WT D+KD L+ ++ AEK
Sbjct: 898 TGEVVSMGGERYKFSGRISQIGDNEVEITELPIRSWTQDFKDRLEEIIK-AEK 949
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 83/185 (44%), Gaps = 43/185 (23%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCP 911
YDYLLGM WSLT ER +L ++ DK TE+N L K + D+W+ DLD + K
Sbjct: 1119 YDYLLGMPLWSLTKERVEKLRRQIGDKETEINTLIKLSKEDIWTADLDDFLAEWKFQ--- 1175
Query: 912 GGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGED------------APPPT---KAS 956
+RQT+ S R ++++ + SG+ P P K++
Sbjct: 1176 -----LEDEERRQTKRTKSARRVSTKLKTAATKSGKKRKAADDDDSDFGLPKPKKSGKST 1230
Query: 957 PVKKKKPAA----------KRPAPKSDSS-----DLSDSDGDSDF-----ASRKKKTAAA 996
+ + KP A +P P S+ S SD D + DF +RK + A++
Sbjct: 1231 TINRVKPQAGLLNYLNSVPSKPKPNSNKSVGGADGASDLDDEDDFEPEILPARKPRAASS 1290
Query: 997 KKAKP 1001
K AKP
Sbjct: 1291 KPAKP 1295
>gi|440904260|gb|ELR54799.1| DNA topoisomerase 2-alpha, partial [Bos grunniens mutus]
Length = 1600
Score = 458 bits (1179), Expect = e-125, Method: Compositional matrix adjust.
Identities = 227/364 (62%), Positives = 272/364 (74%), Gaps = 28/364 (7%)
Query: 12 VQQNGNGPSPKKKTPANK-MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRET 70
V +N KK A K +S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + +
Sbjct: 2 VNENMQVSKTKKNEDAKKRLSIERIYQKKTQLEHILLRPDTYIGSVESVTQQMWVYDEDI 61
Query: 71 NHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPV 130
+ RE+TYVPGLYKIFDEILVNA DNKQRDPKM+CI+IT++ E N IS+WNNGKGIPV
Sbjct: 62 G-INYREVTYVPGLYKIFDEILVNAADNKQRDPKMSCIRITIDPENNLISIWNNGKGIPV 120
Query: 131 VEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGR 190
VEHK EKM+VP +IF G LLTSSNY+DEE KVTGGR
Sbjct: 121 VEHKVEKMYVPALIF-------------------------GQLLTSSNYDDEEKKVTGGR 155
Query: 191 NGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPD 250
NGYGAKLCNIFS+KF VET+ EYKK FKQ W DNM K E+K S +D+T ITF PD
Sbjct: 156 NGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGKAGEMELKPFSGEDYTCITFHPD 215
Query: 251 LTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDED 309
L+KFKM SLDKD+V L+ RRAYD A STKDVKV+LNG +LPVK F+ YV LY D+ DE
Sbjct: 216 LSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVYLNGNRLPVKGFRSYVDLYLKDKVDET 275
Query: 310 GDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVK 369
G+P+K+I+E VN RWEV + S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVK
Sbjct: 276 GNPLKVIHEQVNHRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVK 335
Query: 370 KKNK 373
KKNK
Sbjct: 336 KKNK 339
Score = 300 bits (768), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 134/177 (75%), Positives = 159/177 (89%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+PKL+DANDAG +NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+
Sbjct: 508 IPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREAS 567
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
HKQI+ENAEINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFI
Sbjct: 568 HKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFI 627
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
HHNWP+LLR FLEEFITPI+K +K ++E++FYSLPEFEEWK T N +K+KYYK
Sbjct: 628 HHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYK 684
Score = 152 bits (384), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 905 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLMDGEEPLPMLPSYKN 964
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG ++ +++V++GE+AIL+ +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 965 FKGTVEELAPNQYVISGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 1019
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL K R++K EL LK+K+P+DLW +DL A E
Sbjct: 1195 FNYLLDMPLWYLTKEKKDELCKLRNEKEQELETLKRKSPSDLWKEDLAAFVE 1246
>gi|225555588|gb|EEH03879.1| DNA topoisomerase II [Ajellomyces capsulatus G186AR]
Length = 1716
Score = 458 bits (1179), Expect = e-125, Method: Compositional matrix adjust.
Identities = 244/522 (46%), Positives = 316/522 (60%), Gaps = 94/522 (18%)
Query: 165 VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKD 224
+P ++FGHLL+SSNY+D + KVTGGRNGYGAKLCNIFS++F +ET+ S+ KK +KQ W D
Sbjct: 146 IPELVFGHLLSSSNYDDNQQKVTGGRNGYGAKLCNIFSTQFTLETADSKLKKKYKQTWTD 205
Query: 225 NMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVF 284
NMSK+ P+I DD+TK+TF PD KF M +D D L+ RR YD A + K V V
Sbjct: 206 NMSKMGKPKITDCKGDDYTKVTFIPDFKKFGMDGIDDDFEALVKRRVYDLAGTCK-VNVK 264
Query: 285 LNGEKLPVKNFQDYVKLYT-----DRQDEDG-DPVKIIYENVNPRWEVAIAPSDRGFQQV 338
LNG ++P++NF+ Y+++YT +R +E D +II +N +PRWE+ A SD FQQV
Sbjct: 265 LNGSRIPIRNFKQYMQMYTNAIKKERGEEAAKDKSEIITDNPDPRWEIGFAVSDGSFQQV 324
Query: 339 SFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMA 398
SFVNSIATT GG HV++V D I ++++ VKKKNK
Sbjct: 325 SFVNSIATTSGGSHVNSVADQICNKLVDAVKKKNKT------------------------ 360
Query: 399 KTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTCV--- 455
G LKP Q++NHI++F+N IVNP F SQTKE +T + FGS CV
Sbjct: 361 -----------GATLKPAQIRNHIFVFVNAQIVNPAFTSQTKEQLTTKPSQFGSKCVLSD 409
Query: 456 ----------------------------------------PKLEDANDAGTKNSIDCTLI 475
PKL DAN AGTK CTLI
Sbjct: 410 EFLKKILKTQVMENILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAGTKEGHHCTLI 469
Query: 476 LTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQY 535
LTEGDSAK LA++G +VG D +GVFPLRGKLLNVR+A+ QI +NAEI N+ LGLQ+
Sbjct: 470 LTEGDSAKGLAMAGRAIVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQNIKNFLGLQH 529
Query: 536 SKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPI 594
K+YT D K LRYG LMIMTDQD DGSHIKGL+INF +P+LL++P FL EFITPI
Sbjct: 530 KKEYT---DTKGLRYGHLMIMTDQDHDGSHIKGLLINFFQVAFPSLLKIPQFLIEFITPI 586
Query: 595 IKATKAREE-----LSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+K K + F+++ E++ W+E + ++ KYYK
Sbjct: 587 VKVWKGDPKNPTISKVFFTMQEYKTWQEIHGHDKRWEKKYYK 628
Score = 139 bits (350), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 84/113 (74%), Gaps = 1/113 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y P++PM+L+NGAEGIGTGW T IPN+NP EIV N+KR++ GE +PM+PW++ F
Sbjct: 838 IEPEIYFPVVPMILINGAEGIGTGWSTSIPNYNPEEIVANLKRLMAGEPLVPMEPWFRGF 897
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
GE+ G R+ +G I+ + D+++EITEL + WT D+KD L+ ++ AEK
Sbjct: 898 TGEVVSMGGERYKFSGRISQIGDNEVEITELPIRSWTQDFKDRLEEIIK-AEK 949
Score = 57.4 bits (137), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 82/185 (44%), Gaps = 43/185 (23%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCP 911
YDYLLGM WSLT ER +L ++ DK TE++ L K + D+W+ DLD + K
Sbjct: 1119 YDYLLGMPLWSLTKERVEKLRRQIGDKETEIDTLIKLSKEDIWTADLDDFLAEWKFQ--- 1175
Query: 912 GGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGED------------APPPT---KAS 956
+RQT+ S R ++++ + G+ P P K++
Sbjct: 1176 -----LEDEERRQTKRTKSARRVSTKLKTAATKGGKKRKAADDDDSDFGLPKPKKSGKST 1230
Query: 957 PVKKKKPAA----------KRPAPKSDSS-----DLSDSDGDSDF-----ASRKKKTAAA 996
+ + KP A +P P S+ S SD D + DF +RK + A++
Sbjct: 1231 TINRVKPQAGLLDYLNSVPSKPKPNSNKSVGGADGASDLDDEDDFEPEILPTRKPRAASS 1290
Query: 997 KKAKP 1001
K AKP
Sbjct: 1291 KPAKP 1295
>gi|295668785|ref|XP_002794941.1| DNA topoisomerase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226285634|gb|EEH41200.1| DNA topoisomerase [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1582
Score = 455 bits (1170), Expect = e-124, Method: Compositional matrix adjust.
Identities = 247/522 (47%), Positives = 313/522 (59%), Gaps = 94/522 (18%)
Query: 165 VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKD 224
+P +IFGHLLTSSNYND + KVTGGRNGYGAKLCNIFS++F +ET+ S K +KQ W +
Sbjct: 132 IPELIFGHLLTSSNYNDMQQKVTGGRNGYGAKLCNIFSTEFTIETADSRQNKKYKQTWTN 191
Query: 225 NMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVF 284
NMSK+ +I D+TK+TFTPD KF M +D D L+ RR YD A + K V V
Sbjct: 192 NMSKMGKAKITDCKGQDYTKVTFTPDFKKFGMEGVDDDFEALVKRRVYDMAGTCK-VIVK 250
Query: 285 LNGEKLPVKNFQDYVKLYT-----DRQDEDG-DPVKIIYENVNPRWEVAIAPSDRGFQQV 338
LNG ++PV+NF+ Y+ +YT +R +E D +I+ +N +PRWEV A SD FQQV
Sbjct: 251 LNGSRIPVRNFKQYMAMYTNAIKKERGEEAAKDKTEILLDNPDPRWEVGFAVSDGSFQQV 310
Query: 339 SFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMA 398
SFVNSIATT GG HV+AV D I ++ E VKK+NK
Sbjct: 311 SFVNSIATTSGGSHVNAVADQICNRLAETVKKRNK------------------------- 345
Query: 399 KTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTCV--- 455
G +LKP Q++NHI++F+N IVNP F SQTKE +T + FGS V
Sbjct: 346 ----------TGASLKPAQIRNHIFVFVNSQIVNPAFTSQTKEQLTTKPSQFGSKIVLSE 395
Query: 456 ----------------------------------------PKLEDANDAGTKNSIDCTLI 475
PKL DAN AGTK CTLI
Sbjct: 396 EFLKKVIKTQVMENIMHFAEKKADQILKKSDGNRRSRMNNPKLTDANKAGTKEGHHCTLI 455
Query: 476 LTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQY 535
LTEGDSAK LA++G +VG D +GVFPLRGK+LNVR+A+ QI +NAEI N+ LGLQ+
Sbjct: 456 LTEGDSAKGLAMAGRAIVGPDLFGVFPLRGKMLNVRDASVDQISKNAEIQNIKNFLGLQH 515
Query: 536 SKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPI 594
K+YT D K LRYG LMIMTDQD DGSHIKGL+INF+ +P+LL++P FL EFITPI
Sbjct: 516 KKEYT---DTKGLRYGHLMIMTDQDHDGSHIKGLLINFLQVAFPSLLKIPQFLIEFITPI 572
Query: 595 IKATKAREE-----LSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+K K + SF+++ E+E WKE + ++ KYYK
Sbjct: 573 VKVWKGDPKNPIISKSFFTMQEYETWKEIHGHDRRWEKKYYK 614
Score = 137 bits (346), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 113/380 (29%), Positives = 181/380 (47%), Gaps = 62/380 (16%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P+VL+NGA+GIGTGW T IPN+NP +IV N+K ++ GE +PM+PW++ F
Sbjct: 824 IEPEIYVPVVPLVLINGADGIGTGWSTSIPNYNPEDIVANLKCLMDGEPLVPMQPWFRGF 883
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDEVHPGP 779
GE+ G R+ +G I+ + ++++EITEL + WT D+KD L+ ++
Sbjct: 884 TGEVVSLGGERYKFSGRISQVGENEVEITELPIRCWTQDFKDRLEEII------------ 931
Query: 780 GRKSHPRPIAPKSYKIDDDSEEEEIEEVFHDNELAKPQKTGPQLERQERQAAEGED---- 835
K+ P K YK D + ++ V +E + LE + + +
Sbjct: 932 --KAEKVPSFIKDYK--DYNTHTKVHFVIQLDEKHAAKAIAEGLEEKFKLSKTIATSNLV 987
Query: 836 --DEAGSQTQEEEDPDKDYDYL---------LGMTFWSLTMERKNELLKKRDDKMTELNI 884
D G T+ + D ++ M WSLT ER +L ++ +K E++
Sbjct: 988 AFDPEGRITKYDSPEDILREFYSVRIKFYEKRKMPLWSLTQERVEKLRRQIGEKEIEVDN 1047
Query: 885 LKKKAPTDLWSDDLDALREKDKIHPCPGGNR-------TRGLALKRQTRYQPSNRVLTSR 937
L K + D+W DLD + K G R R ++ K +T + + +
Sbjct: 1048 LIKLSKEDIWRKDLDDFIAEWKFQLEDEGRRRAKSAKSVRRVSSKLKTAVKGPKKRKAAH 1107
Query: 938 DEPMVVSSGEDAPPP---TKASPVKKKKPAAK------RPAPK---------SDSSDLSD 979
D+ S D P P +KA+ V + KP + +PAP D+S+L
Sbjct: 1108 DD----DSDFDLPKPKKSSKATTVNRAKPQSNLLSYLSKPAPNPKPAQGVGVDDASEL-- 1161
Query: 980 SDGDSDFASRKKKTAAAKKA 999
+G S+ +K AAA KA
Sbjct: 1162 VEGKSERPPLRKPRAAASKA 1181
>gi|226294840|gb|EEH50260.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb18]
Length = 1760
Score = 454 bits (1167), Expect = e-124, Method: Compositional matrix adjust.
Identities = 247/522 (47%), Positives = 313/522 (59%), Gaps = 94/522 (18%)
Query: 165 VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKD 224
+P +IFGHLLTSSNYND + KVTGGRNGYGAKLCNIFS++F +ET+ S K +KQ W +
Sbjct: 309 IPELIFGHLLTSSNYNDMQQKVTGGRNGYGAKLCNIFSTEFTIETADSRQNKKYKQTWTN 368
Query: 225 NMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVF 284
NMSK+ +I D+TK+TFTPD KF M +D D L+ RR YD A + K V V
Sbjct: 369 NMSKMGKAKITDCKGQDYTKVTFTPDFKKFGMEGVDDDFEALVKRRVYDMAGTCK-VIVK 427
Query: 285 LNGEKLPVKNFQDYVKLYT-----DRQDEDG-DPVKIIYENVNPRWEVAIAPSDRGFQQV 338
LNG ++PV+NF+ Y+ +YT +R +E D +I+ +N +PRWEV A SD FQQV
Sbjct: 428 LNGSRIPVRNFKQYMAMYTNAIKKERGEEAAKDKTEILLDNPDPRWEVGFAVSDGSFQQV 487
Query: 339 SFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMA 398
SFVNSIATT GG HV+AV D I ++ E VKK+NK
Sbjct: 488 SFVNSIATTSGGSHVNAVADQICNRLAETVKKRNKT------------------------ 523
Query: 399 KTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTCV--- 455
G +LKP Q++NHI++F+N IVNP F SQTKE +T + FGS V
Sbjct: 524 -----------GASLKPAQIRNHIFVFVNSQIVNPAFTSQTKEQLTTKPSQFGSKIVLSE 572
Query: 456 ----------------------------------------PKLEDANDAGTKNSIDCTLI 475
PKL DAN AGTK CTLI
Sbjct: 573 EFLKKVIKTQVMENIMHFAEKKADQILKKSDGNRRSRMNNPKLTDANKAGTKEGHHCTLI 632
Query: 476 LTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQY 535
LTEGDSAK LA++G +VG D +GVFPLRGK+LNVR+A+ QI +NAEI N+ LGLQ+
Sbjct: 633 LTEGDSAKGLAMAGRAIVGPDLFGVFPLRGKMLNVRDASVDQISKNAEIQNIKNFLGLQH 692
Query: 536 SKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPI 594
K+YT D K LRYG LMIMTDQD DGSHIKGL+INF+ +P+LL++P FL EFITPI
Sbjct: 693 KKEYT---DTKGLRYGHLMIMTDQDHDGSHIKGLLINFLQVAFPSLLKIPQFLIEFITPI 749
Query: 595 IKATKAREE-----LSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+K K + SF+++ E+E WKE + ++ KYYK
Sbjct: 750 VKVWKGDPKNPIISKSFFTMQEYETWKEIHGHDRRWEKKYYK 791
Score = 136 bits (342), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 110/380 (28%), Positives = 177/380 (46%), Gaps = 59/380 (15%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE Y+P++P+VL+NGA+GIGTGW T IPN+NP +IV N+K ++ GE +PM+PW++ F
Sbjct: 1001 IEPEIYVPVVPLVLINGADGIGTGWSTSIPNYNPEDIVANLKCLMDGEPLVPMQPWFRGF 1060
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDEVHPGP 779
GE+ G R+ +G I+ + ++++EITEL + WT D+KD L+ ++
Sbjct: 1061 TGEVVSLGGERYKFSGRISQVGENEVEITELPIRCWTQDFKDRLEEII------------ 1108
Query: 780 GRKSHPRPIAPKSYKIDDDSEEEEIEEVFHDNELAKPQKTGPQLERQERQAAEGED---- 835
K+ P K YK D + ++ V +E + LE + + +
Sbjct: 1109 --KAEKVPSFIKDYK--DYNTHTKVHFVIQLDEKHAAKAIAEGLEEKFKLSKTIATSNLV 1164
Query: 836 --DEAGSQTQEEEDPDKDYDYL---------LGMTFWSLTMERKNELLKKRDDKMTELNI 884
D G T+ + D ++ M WSLT ER +L ++ +K E++
Sbjct: 1165 AFDPEGRITKYDSPEDILREFYSVRIKFYEKRKMPLWSLTQERVEKLRRQIGEKEIEVDN 1224
Query: 885 LKKKAPTDLWSDDLDALREKDKIHPCPGGNR-------TRGLALKRQTRYQPSNRVLTSR 937
L K + D+W DLD + K G R R ++ K +T + + +
Sbjct: 1225 LIKLSKEDIWRKDLDDFIAEWKFQLEDEGRRRAKSAKSVRRVSSKLKTAVKGPKKRKAAH 1284
Query: 938 DEPMVVSSGEDAP---PPTKASPVKKKKPAAK------RPAPKSDSSDLSDSDGDSDFAS 988
D+ S D P +KA+ V + KP +PAP + +D SD
Sbjct: 1285 DD----DSDFDLPKTKKSSKATTVNRSKPQGNLLSYLSKPAPNPKPAQGVGADDASDLDE 1340
Query: 989 --------RKKKTAAAKKAK 1000
RK + AA+K A+
Sbjct: 1341 GKPERPPLRKPRAAASKAAR 1360
>gi|448935344|gb|AGE58895.1| DNA topoisomerase II [Paramecium bursaria Chlorella virus NYs1]
Length = 571
Score = 452 bits (1163), Expect = e-123, Method: Compositional matrix adjust.
Identities = 258/641 (40%), Positives = 357/641 (55%), Gaps = 122/641 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQ +H+L RPDTYIGS P T+ W+ + ++++TY L KIFDEI+ N+
Sbjct: 5 YQKLSQRDHVLARPDTYIGSTAPQTKNEWVY--VNGKVIKKDVTYSSALLKIFDEIITNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D RD ++ +KI +++ ++SV N+G IP+ +H EK ++P +IF
Sbjct: 63 ADCYNRDKRLTILKICIDE--TSVSVHNDGCSIPIEKHDVEKCYIPELIF---------- 110
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLL N++D E + GRNG G+K NIFS F VE C K
Sbjct: 111 ---------------GHLLAGENFDDTEQRTGAGRNGIGSKATNIFSRIFDVEI-CDGNK 154
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K +KQ W+DNMS V+ P++ + SK+ + TF PD +F + + D D++ ++ RR YD A
Sbjct: 155 K-YKQTWRDNMSIVSKPKVTTCSKNPYITTTFFPDFVRFGVETFDDDILSVMRRRVYDMA 213
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A VKV LNG++L +KN +DY LY + E K +E+ W+V +A + F
Sbjct: 214 AVLGKVKVMLNGKRLEIKNTEDYFSLYIGSKTE----TKRAFEHTPEEWDVGVACVE-DF 268
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
VSFVNS+ T +GG HV+AV DAI K ++E KK
Sbjct: 269 TPVSFVNSVVT-RGGTHVNAVTDAISKAVVEAAAKKK----------------------- 304
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT----------- 444
+ ++P VKN +++F+N IVNPTFDSQTKE +T
Sbjct: 305 ---------------ITVRPLTVKNRMFVFVNATIVNPTFDSQTKEILTSRNARVTLSEA 349
Query: 445 LQKGSFGS--------------------------------TCVPKLEDANDAGTKNSIDC 472
K + G T +PKL DA AGT NS C
Sbjct: 350 FMKKAVGVLLDAVIQETNVRTSLVDQKELKKTDGAKKIRVTGIPKLNDATWAGTNNSKMC 409
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA++GL VVGR++YGVFPLRGKLLNVR+A+ I +N EI L +ILG
Sbjct: 410 TLILTEGDSAATLAIAGLSVVGRERYGVFPLRGKLLNVRDASVASITKNEEITALKQILG 469
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
LQ K Y +D +LRYG +MIMTD D DG+HI GL++NF H +P+LL +P FL++FI
Sbjct: 470 LQTGKVY---KDTSSLRYGHVMIMTDADVDGTHISGLVMNFFHSCFPSLLEIPGFLKKFI 526
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYKV 632
TPI+ A K ++ FYSLP++E+W + T ++ Y+IKYYKV
Sbjct: 527 TPIVVAKKGKDVREFYSLPDYEDWVKTTKDYSKYQIKYYKV 567
>gi|134026046|gb|AAI35319.1| LOC100038293 protein [Xenopus (Silurana) tropicalis]
Length = 343
Score = 451 bits (1161), Expect = e-123, Method: Compositional matrix adjust.
Identities = 218/352 (61%), Positives = 269/352 (76%), Gaps = 27/352 (7%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
KK+ ++SVE+IYQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + E + R++T+VP
Sbjct: 18 KKSDNKRLSVERIYQKKTQLEHILLRPDTYIGSVEPVTQQMWVFD-EDEGLNCRDVTFVP 76
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRDP M+CIKIT+N E+NT+SVWNNGKGIPVVEHK EK+FVP
Sbjct: 77 GLYKIFDEILVNAADNKQRDPTMSCIKITINPESNTVSVWNNGKGIPVVEHKVEKVFVPA 136
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D++ KVTGGRNGYGAKLCNIFS
Sbjct: 137 LIF-------------------------GQLLTSSNYDDDQKKVTGGRNGYGAKLCNIFS 171
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYKK FKQ W DNMS +IK +D+T ITF PDL+KFKM LDKD
Sbjct: 172 NKFTVETACREYKKVFKQTWTDNMSDAADAKIKPFDGEDYTCITFQPDLSKFKMQILDKD 231
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L++RRAYD A S+K VKVFLNG++LP+ F+ YV LY ++ DE G+P+K+++E VN
Sbjct: 232 IVALMSRRAYDVAGSSKGVKVFLNGKRLPISGFRSYVDLYLKNKLDETGNPLKVMHELVN 291
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNK 373
RWE+ + S++GFQQ+SFVNSIATTKGGRHVD V D I+ ++IEVVKKK K
Sbjct: 292 DRWEICLTMSEKGFQQISFVNSIATTKGGRHVDYVADQIIAKLIEVVKKKKK 343
>gi|448931890|gb|AGE55451.1| DNA topoisomerase II [Paramecium bursaria Chlorella virus MA-1E]
Length = 570
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 261/641 (40%), Positives = 364/641 (56%), Gaps = 122/641 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQ EH+L RPDTYIGSV P T+ W+ + R+++TY P L KIFDEI+ N+
Sbjct: 4 YQKLSQREHVLARPDTYIGSVAPQTKNEWVY--VDGKIIRKDVTYPPALLKIFDEIITNS 61
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D RD K+ +K+ +++++ +SV N+G IP+ +H EK ++P +IF
Sbjct: 62 ADCYNRDKKLTVLKVCIDEKS--VSVHNDGCNIPIEKHDAEKCYIPELIF---------- 109
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLL N++D E + GRNG G+K NIFS KF VE + K
Sbjct: 110 ---------------GHLLAGENFDDSEQRTGAGRNGIGSKATNIFSKKFDVEIC--DGK 152
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K +KQ W++NMS ++ P++ + SKD + TF PD +F + S D D + ++ RR YD A
Sbjct: 153 KKYKQSWENNMSVMSKPKVTTCSKDSYITTTFFPDFERFGIDSFDDDTMSIMVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A VKV LNG++L +KN +DY LY + E K +E+ W+VA++ SD F
Sbjct: 213 AVLNKVKVMLNGKRLEIKNTEDYFSLYVGNKTE----TKRAFEHTPENWDVAVSCSDE-F 267
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
VSFVNS+ T +GG HV+AV DA+ K ++E KK
Sbjct: 268 TPVSFVNSVVT-RGGTHVNAVTDAVAKAVVEAAAKKK----------------------- 303
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT----------- 444
+ +KP VK +++F+N + NPTFDSQTKEN+T
Sbjct: 304 ---------------IVVKPATVKGRMFVFVNATVFNPTFDSQTKENLTSRNARVTLSDT 348
Query: 445 -------------LQKGSFGSTCV-------------------PKLEDANDAGTKNSIDC 472
+Q+ + ++ V PKL DA AGTKNS C
Sbjct: 349 FVKKAVGVLLDAVIQETNVRTSLVDQKELKKTDGAKKSRVSGIPKLNDAAWAGTKNSKMC 408
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA++GL VVGR++YGVFPLRGKLLNVR+A+ I +N EI L +ILG
Sbjct: 409 TLILTEGDSAATLAIAGLSVVGRERYGVFPLRGKLLNVRDASVASITKNEEITALKQILG 468
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
LQ K Y +D +LRYG +MIMTD D DG+HI GL++NF H +P+LL +P FL++FI
Sbjct: 469 LQTGKVY---KDTSSLRYGHVMIMTDADVDGTHISGLVMNFFHSCFPSLLEIPGFLKKFI 525
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYKV 632
TPI+ A + ++ FYSLP++E+W + T ++ Y+IKYYKV
Sbjct: 526 TPIVVAKRGKDVREFYSLPDYEDWVKTTKDYSKYQIKYYKV 566
>gi|448931515|gb|AGE55077.1| DNA topoisomerase II [Paramecium bursaria Chlorella virus MA-1D]
Length = 1062
Score = 448 bits (1152), Expect = e-122, Method: Compositional matrix adjust.
Identities = 257/640 (40%), Positives = 356/640 (55%), Gaps = 122/640 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQ +H+L RPDTYIGS P T+ W+ + ++++TY L KIFDEI+ N+
Sbjct: 5 YQKLSQRDHVLARPDTYIGSTAPQTKNEWVY--VNGKVIKKDVTYSSALLKIFDEIITNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D RD ++ +KI +++ ++SV N+G IP+ +H EK ++P +IF
Sbjct: 63 ADCYNRDKRLTILKICIDE--TSVSVHNDGCSIPIEKHDVEKCYIPELIF---------- 110
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLL N++D E + GRNG G+K NIFS F VE C K
Sbjct: 111 ---------------GHLLAGENFDDTEQRTGAGRNGIGSKATNIFSRIFDVEI-CDGNK 154
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K +KQ W+DNMS V+ P++ + SK+ + TF PD +F + + D D++ ++ RR YD A
Sbjct: 155 K-YKQTWRDNMSIVSKPKVTTCSKNPYITTTFFPDFVRFGVETFDDDILSVMRRRVYDMA 213
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A VKV LNG++L +KN +DY LY + E K +E+ W+V +A + F
Sbjct: 214 AVLGKVKVMLNGKRLEIKNTEDYFSLYIGSKTE----TKRAFEHTPEEWDVGVACVE-DF 268
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
VSFVNS+ T +GG HV+AV DAI K ++E KK
Sbjct: 269 TPVSFVNSVVT-RGGTHVNAVTDAISKAVVEAAAKKK----------------------- 304
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT----------- 444
+ ++P VKN +++F+N IVNPTFDSQTKE +T
Sbjct: 305 ---------------ITVRPLTVKNRMFVFVNATIVNPTFDSQTKEILTSRNARVTLSEA 349
Query: 445 LQKGSFGS--------------------------------TCVPKLEDANDAGTKNSIDC 472
K + G T +PKL DA AGT NS C
Sbjct: 350 FMKKAVGVLLDAVIQETNVRTSLVDQKELKKTDGAKKIRVTGIPKLNDATWAGTNNSKMC 409
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA++GL VVGR++YGVFPLRGKLLNVR+A+ I +N EI L +ILG
Sbjct: 410 TLILTEGDSAATLAIAGLSVVGRERYGVFPLRGKLLNVRDASVASITKNEEITALKQILG 469
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
LQ K Y +D +LRYG +MIMTD D DG+HI GL++NF H +P+LL +P FL++FI
Sbjct: 470 LQTGKVY---KDTSSLRYGHVMIMTDADVDGTHISGLVMNFFHSCFPSLLEIPGFLKKFI 526
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A K ++ FYSLP++E+W + T ++ Y+IKYYK
Sbjct: 527 TPIVVAKKGKDVREFYSLPDYEDWVKTTKDYSKYQIKYYK 566
Score = 131 bits (330), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 82/109 (75%), Gaps = 1/109 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE+Y+P+IP +LVNG+ GIGTGW T IP++NP++IVDN+KR+I GED + MKPW++
Sbjct: 774 KIEPEYYVPVIPSILVNGSSGIGTGWSTNIPSYNPKDIVDNVKRLIAGEDLVEMKPWFRG 833
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
FKG+I+ +V G + + + + ++EL +GKWT DYK+ LD LL
Sbjct: 834 FKGKIEETSPGVYVTKG-LYMPNGKTITVSELPIGKWTQDYKEHLDGLL 881
Score = 41.6 bits (96), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 849 DKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDL 898
D YDYLL M SLT+ER EL ++ EL+ L K T++W++DL
Sbjct: 1010 DGKYDYLLNMRISSLTLERAEELKRESVKLEKELDDLSKTTETEMWNNDL 1059
>gi|448931144|gb|AGE54707.1| DNA topoisomerase II [Paramecium bursaria Chlorella virus KS1B]
Length = 570
Score = 447 bits (1151), Expect = e-122, Method: Compositional matrix adjust.
Identities = 261/641 (40%), Positives = 364/641 (56%), Gaps = 122/641 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQ EH+L RPDTYIGSV P T+ W+ + R+++TY P L KIFDEI+ N+
Sbjct: 4 YQKLSQREHVLARPDTYIGSVAPQTKNEWVY--VDGKIIRKDVTYPPALLKIFDEIITNS 61
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D RD K+ +K+ +++++ +SV N+G IP+ +H EK ++P +IF
Sbjct: 62 ADCYNRDKKLTVLKVCIDEKS--VSVHNDGCNIPIEKHDAEKCYIPELIF---------- 109
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLL N++D E + GRNG G+K NIFS KF VE + K
Sbjct: 110 ---------------GHLLAGENFDDSEQRTGAGRNGIGSKATNIFSKKFDVEIC--DGK 152
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K +KQ W++NMS ++ P++ + SKD + TF PD +F + S D D + ++ RR YD A
Sbjct: 153 KKYKQSWENNMSVMSKPKVTTCSKDSYITTTFFPDFERFGIESFDDDTMSIMVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A VKV LNG++L +KN +DY LY + E K +E+ W+VA++ SD F
Sbjct: 213 AVLNKVKVMLNGKRLEIKNTEDYFSLYVGNKTE----TKRAFEHTPDNWDVAVSCSDE-F 267
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
VSFVNS+ T +GG HV+AV DA+ K ++E KK
Sbjct: 268 TPVSFVNSVVT-RGGTHVNAVTDAVAKAVVEAAAKKK----------------------- 303
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT----------- 444
+ +KP VK +++F+N +VNPTFDSQTKE +T
Sbjct: 304 ---------------IVVKPATVKGRMFVFVNATVVNPTFDSQTKEILTSRNARVTLSDT 348
Query: 445 -------------LQKGSFGSTCV-------------------PKLEDANDAGTKNSIDC 472
+Q+ + ++ V PKL DA AGTKNS C
Sbjct: 349 FVKKAVGVLLDAVIQETNVRTSLVDQKELKKTDGAKKSRVSGIPKLNDAAWAGTKNSKMC 408
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA++GL VVGR++YGVFPLRGKLLNVR+A+ I +N EI L +ILG
Sbjct: 409 TLILTEGDSAATLAIAGLSVVGRERYGVFPLRGKLLNVRDASVASITKNEEITALKQILG 468
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
LQ K Y +D +LRYG +MIMTD D DG+HI GL++NF H +P+LL +P FL++FI
Sbjct: 469 LQTGKVY---KDTSSLRYGHVMIMTDADVDGTHISGLVMNFFHSCFPSLLEIPGFLKKFI 525
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYKV 632
TPI+ A + ++ FYSLP++E+W + T ++ Y+IKYYKV
Sbjct: 526 TPIVVAKRGKDVREFYSLPDYEDWVKTTKDYSKYQIKYYKV 566
>gi|448930832|gb|AGE54396.1| DNA topoisomerase II [Paramecium bursaria Chlorella virus IL-5-2s1]
Length = 1063
Score = 447 bits (1150), Expect = e-122, Method: Compositional matrix adjust.
Identities = 258/640 (40%), Positives = 354/640 (55%), Gaps = 122/640 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQ +H+L RPDTYIGS P T+ W+ + ++++TY L KIFDEI+ N+
Sbjct: 5 YQKLSQRDHVLARPDTYIGSTIPQTKNEWVY--VNGKVIKKDVTYSSALLKIFDEIITNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D RD ++ +KI +++ ++SV N+G IP+ +H EK ++P +IF
Sbjct: 63 ADCYNRDKRLTILKICIDE--TSVSVHNDGCSIPIEKHDIEKCYIPELIF---------- 110
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLL N++D E + GRNG G+K NIFS F VE C K
Sbjct: 111 ---------------GHLLAGENFDDTEQRTGAGRNGIGSKATNIFSRIFDVEI-CDGNK 154
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K +KQ W+DNMS V+ P++ + SK+ + TF PD +F + + D D++ ++ RR YD A
Sbjct: 155 K-YKQTWRDNMSIVSKPKVTTCSKNPYITTTFFPDFVRFGVETFDDDILSVMRRRVYDMA 213
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A VKV LNG++L +KN +DY LY + E K +E+ W+V +A + F
Sbjct: 214 AVLGKVKVMLNGKRLEIKNTEDYFSLYIGSKTE----TKRAFEHTPEEWDVGVACVE-DF 268
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
VSFVNS+ T +GG HV+AV DAI K ++E KK
Sbjct: 269 TPVSFVNSVVT-RGGTHVNAVTDAISKAVVEAAAKKK----------------------- 304
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT----------- 444
+ ++P VKN +++F+N IVNPTFDSQTKE +T
Sbjct: 305 ---------------ITVRPLTVKNRMFVFVNATIVNPTFDSQTKEILTSRNARVTLSDA 349
Query: 445 LQKGSFGS--------------------------------TCVPKLEDANDAGTKNSIDC 472
K + G T +PKL DA AGT NS C
Sbjct: 350 FMKKAVGVLLDAVIQETNVRTSLIDQKELKKTDGAKKIRVTGIPKLNDATWAGTNNSKLC 409
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA++GL VVGRDKYGVFPLRGKLLNVR+A+ I +N EI L +ILG
Sbjct: 410 TLILTEGDSAATLAIAGLSVVGRDKYGVFPLRGKLLNVRDASVASITKNEEITALKQILG 469
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
LQ K Y +D LRYG +MIMTD D DG+HI GL++NF H +P+LL +P FL +FI
Sbjct: 470 LQTGKVY---KDTSYLRYGHVMIMTDADVDGTHISGLVMNFFHSCFPSLLEIPGFLRKFI 526
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A + ++ FYSLP++E+W + T ++ Y+IKYYK
Sbjct: 527 TPIVVAKRGKDVREFYSLPDYEDWMKITKDYSKYQIKYYK 566
Score = 131 bits (330), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 81/109 (74%), Gaps = 1/109 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE+Y+P+IP +LVNG+ GIGTGW T IP++NP++IVDN+KR+I GED + MKPWYK
Sbjct: 774 KIEPEYYVPVIPSILVNGSSGIGTGWSTNIPSYNPKDIVDNVKRLISGEDLVEMKPWYKG 833
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
FKG+I +V G + + + + ++EL +GKWT DYK+ LD LL
Sbjct: 834 FKGKIMETSPGVYVTKG-LYMPNGKTIVVSELPIGKWTQDYKEHLDGLL 881
Score = 43.1 bits (100), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 849 DKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
D YDYLL M SLT+ER EL ++ EL+ L K TD+W+ DL ++
Sbjct: 1010 DDKYDYLLNMRISSLTLERAEELKRESVKLEKELDDLSKTTETDMWNHDLQSV 1062
>gi|448929090|gb|AGE52659.1| DNA topoisomerase II [Paramecium bursaria Chlorella virus CvsA1]
Length = 1064
Score = 446 bits (1146), Expect = e-121, Method: Compositional matrix adjust.
Identities = 260/640 (40%), Positives = 363/640 (56%), Gaps = 122/640 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQ EH+L RPDTYIGSV P T+ W+ + R+++TY P L KIFDEI+ N+
Sbjct: 4 YQKLSQREHVLARPDTYIGSVAPQTKNEWVY--VDGKIIRKDVTYPPALLKIFDEIITNS 61
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D RD K+ +K+ +++++ +SV N+G IP+ +H EK ++P +IF
Sbjct: 62 ADCYNRDKKLTVLKVCIDEKS--VSVHNDGCNIPIEKHDAEKCYIPELIF---------- 109
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLL N++D E + GRNG G+K NIFS KF VE + K
Sbjct: 110 ---------------GHLLAGENFDDSEQRTGAGRNGIGSKATNIFSKKFDVE--ICDGK 152
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K +KQ W++NMS ++ P++ + SKD + TF PD +F + S D D + ++ RR YD A
Sbjct: 153 KKYKQSWENNMSVMSKPKVTTCSKDSYITTTFFPDFERFGIDSFDDDTMSIMVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A VKV LNG++L +KN +DY LY + E K +E+ W+VA++ SD F
Sbjct: 213 AVLNKVKVMLNGKRLEIKNTEDYFSLYVGNKTE----TKRAFEHTPENWDVAVSCSDE-F 267
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
VSFVNS+ T +GG HV+AV DA+ K ++E KK
Sbjct: 268 TPVSFVNSVVT-RGGTHVNAVTDAVAKAVVEAAAKKK----------------------- 303
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT----------- 444
+ +KP VK +++F+N + NPTFDSQTKEN+T
Sbjct: 304 ---------------IVVKPATVKGRMFVFVNATVFNPTFDSQTKENLTSRNARVTLSDT 348
Query: 445 -------------LQKGSFGSTCV-------------------PKLEDANDAGTKNSIDC 472
+Q+ + ++ V PKL DA AGTKNS C
Sbjct: 349 FVKKAVGVLLDAVIQETNVRTSLVDQKELKKTDGAKKSRVSGIPKLNDAAWAGTKNSKMC 408
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA++GL VVGR++YGVFPLRGKLLNVR+A+ I +N EI L +ILG
Sbjct: 409 TLILTEGDSAATLAIAGLSVVGRERYGVFPLRGKLLNVRDASVASITKNEEITALKQILG 468
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
LQ K Y +D +LRYG +MIMTD D DG+HI GL++NF H +P+LL +P FL++FI
Sbjct: 469 LQTGKVY---KDTSSLRYGHVMIMTDADVDGTHISGLVMNFFHSCFPSLLEIPGFLKKFI 525
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A + ++ FYSLP++E+W + T ++ Y+IKYYK
Sbjct: 526 TPIVVAKRGKDVREFYSLPDYEDWVKTTKDYSKYQIKYYK 565
Score = 133 bits (335), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 81/109 (74%), Gaps = 1/109 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE+Y+PIIP +LVNG+ GIGTGW T IP++NP++IVDN+KR+I GED + MKPWY+
Sbjct: 773 KIEPEYYVPIIPSILVNGSSGIGTGWSTNIPSYNPKDIVDNVKRLISGEDLVEMKPWYRG 832
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
FKG+I+ +V G + + + ++EL VGKWT DYK+ LD LL
Sbjct: 833 FKGKIEETSPGVYVTKG-LYMPKGKTIMVSELPVGKWTQDYKEYLDGLL 880
Score = 43.9 bits (102), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%)
Query: 849 DKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
D YDYLL M SLT+ER EL ++ EL+ L K TD+W DL +L
Sbjct: 1009 DGKYDYLLNMRISSLTLERATELEREAVKLNKELDDLSKTTETDMWKQDLTSL 1061
>gi|351737633|gb|AEQ60668.1| Topoisomerase II [Acanthamoeba castellanii mamavirus]
gi|398257307|gb|EJN40915.1| topoisomerase II [Acanthamoeba polyphaga lentillevirus]
Length = 1263
Score = 446 bits (1146), Expect = e-121, Method: Compositional matrix adjust.
Identities = 265/668 (39%), Positives = 369/668 (55%), Gaps = 125/668 (18%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERR--- 76
S K+ N S+E+ YQKK+ EHIL PDTYIGS+E T MW+ N + +
Sbjct: 2 SKTSKSNKNPKSIEEKYQKKNLHEHILHSPDTYIGSIEEKTCNMWIFNESAGEDDAKIIF 61
Query: 77 -EITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKD 135
EITYVPGLYKI+DE++VNA D+ +R N IK+ ++Q+T ISVWNNG GI V HK+
Sbjct: 62 KEITYVPGLYKIYDEVIVNAADHNKRCQTCNIIKVDIDQKTGQISVWNNGDGIDVAIHKE 121
Query: 136 EKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGA 195
++VP+MI FG LLTS+NY+ E+K GG+NG+GA
Sbjct: 122 HNIWVPSMI-------------------------FGELLTSTNYDKNEEKTVGGKNGFGA 156
Query: 196 KLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFK 255
KL NI+S +F +ET + K F Q + +NM P+I S K +TKITF PD KF
Sbjct: 157 KLANIYSVEFTIETVDANKGKKFFQRFTNNMYDKEEPKISSFKKSSYTKITFIPDFKKFG 216
Query: 256 MTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKI 315
+ LD D + L +R +D A +T + KV+ N +++ NF+ YV LY +G K+
Sbjct: 217 LKCLDDDTLALFKKRVFDLAMTT-NAKVYFNDKQIVQNNFKKYVGLYF----PEGSQHKV 271
Query: 316 IYENV-NPRWEVAIA--PSDR-GFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK 371
+ ++ + RW+V + P+D+ Q +SFVNSI T++GG HV+ VV IV + + KK
Sbjct: 272 VIDDTTHERWKVGVIYDPTDQLEHQNISFVNSICTSRGGTHVEQVVGQIVNGLKTAIVKK 331
Query: 372 NKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIV 431
K++ +KP +K ++ F++ IV
Sbjct: 332 AKNV------------------------------------QIKPAMIKENLIFFVDATIV 355
Query: 432 NPTFDSQTKENMTLQKGSFGS----------------TC--------------------- 454
NP FD+QTKE +T + +FGS C
Sbjct: 356 NPDFDTQTKEYLTKKAANFGSKFEVTEKFIKGVIKTGVCDQIIANAKAREEANLSKTDGK 415
Query: 455 ------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLL 508
KL +A+ AGTK CTLILTEGDSAK+ A+SGL V+GRD YGVFPLRGKLL
Sbjct: 416 GRGPVRYEKLYNAHKAGTKEGYKCTLILTEGDSAKTFAMSGLNVIGRDYYGVFPLRGKLL 475
Query: 509 NVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKG 568
NVR+A+ K+I +N EI + KI+GL+ K Y +D+K LRYG +MI+ DQD DG HIKG
Sbjct: 476 NVRDASPKKIADNEEITAIKKIVGLEQGKVY---DDLKGLRYGSIMILADQDVDGYHIKG 532
Query: 569 LIINFIHHNWPTLLRLP-FLEEFITPII----KATKAREELSFYSLPEFEEWKEETTNWH 623
LI+NFIH WP+L++ F++ F TP++ K ++ ++F S FEEWK+E +
Sbjct: 533 LIMNFIHCFWPSLVKYEGFIQSFATPLLKATKGKGKTKQVVAFTSPQSFEEWKKENNDGK 592
Query: 624 TYKIKYYK 631
+ IKYYK
Sbjct: 593 GWSIKYYK 600
Score = 121 bits (303), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 76/109 (69%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEP +Y PIIPM+LVNGAEGIGTG+ TKI NPR+I+ NIKR++ E+P MKPW+++
Sbjct: 858 RIEPVYYAPIIPMILVNGAEGIGTGYSTKIYPCNPRDIIANIKRLLTNENPKTMKPWFRH 917
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
G I+ ++++ + I+ D + IT+L VG WT +YK LD L+
Sbjct: 918 LTGTIEKIDGAKYISRAKYEIIGKDTIHITDLPVGIWTDNYKAFLDNLI 966
>gi|425701284|gb|AFX92446.1| DNA topoisomerase 2 [Megavirus courdo11]
Length = 1249
Score = 445 bits (1145), Expect = e-121, Method: Compositional matrix adjust.
Identities = 264/656 (40%), Positives = 363/656 (55%), Gaps = 124/656 (18%)
Query: 32 VEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMER----REITYVPGLYKI 87
+E+ YQKK+ EHIL PDTYIGS+E T MW+ N + + +EI+YVPGLYKI
Sbjct: 13 IEEKYQKKNLHEHILHSPDTYIGSIEDKTCNMWIYNNKFKEGDAQIIFKEISYVPGLYKI 72
Query: 88 FDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGH 147
+DE+LVN+ D+ +R N IK+ +N+E+ ISVWNNG GI VVEHK+ K+
Sbjct: 73 YDEVLVNSADHSKRCKSCNMIKVDINEESGEISVWNNGDGIDVVEHKEHKI--------- 123
Query: 148 LLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVV 207
+VP+MIFG LLTS+NY+ E K+ GG+NG+GAKL NI+S++F +
Sbjct: 124 ----------------MVPSMIFGELLTSTNYDKGEKKIVGGKNGFGAKLANIYSTEFHI 167
Query: 208 ETSCSEYKKSFKQVWKDNMSKVTSPEIKSG-SKDDFTKITFTPDLTKFKMTSLDKDMVDL 266
ET ++ K F Q + DNM P+I + SK +TKI+F PD KF + L D+V L
Sbjct: 168 ETIDAKRGKKFYQKFTDNMYTKEKPKITTTKSKTPYTKISFIPDFKKFGLKGLTNDIVAL 227
Query: 267 ITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEV 326
+R YD A +T + KV+ N + + NF Y+ LY E + K++ + RW+V
Sbjct: 228 FKKRVYDLAMTT-NAKVYFNEKIISQNNFTKYIDLYFP---EGSEHKKVLDVTTHDRWKV 283
Query: 327 AIA--PSDR-GFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLF 383
P+D+ Q +SFVNSI T++GG HVD VV+ +VK + E V KK K
Sbjct: 284 CAVYDPTDQLEHQNISFVNSICTSRGGTHVDQVVNQVVKDLKEAVAKKVK---------- 333
Query: 384 GNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENM 443
G+ +KP +K ++ F++ IVNP FD+QTKE +
Sbjct: 334 --------------------------GLQVKPTMIKENLIFFVDATIVNPDFDTQTKEYL 367
Query: 444 TLQKGSFGSTCV-------------------------------------------PKLED 460
T + +FGS KL +
Sbjct: 368 TTKPANFGSNFTVTDIFIKKVIKTGVVSQIIANAQAKAEASLSKTDGKGRGAIRYEKLYN 427
Query: 461 ANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILE 520
A+ AGTK CTLILTEGDSAK+ A+SGL V+GRD YGVFPL+GK LNVR + +I E
Sbjct: 428 AHKAGTKEGYKCTLILTEGDSAKTFAMSGLNVIGRDYYGVFPLKGKPLNVRTKSPLKIAE 487
Query: 521 NAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPT 580
N EI + KI+GL+ K Y D+K LRYG +MI+ DQD DG HIKGLI+N IH WP+
Sbjct: 488 NEEITAIKKIIGLEQGKVYN---DLKELRYGSIMILADQDVDGYHIKGLIMNLIHRFWPS 544
Query: 581 LLRLP-FLEEFITPIIKATKA----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
L + F++ F TP++KATK R+ + F + FEEWK++ + + IKYYK
Sbjct: 545 LAKYEGFIQSFATPLLKATKGKGKTRKVVEFTNPQSFEEWKQKNNDGKGWTIKYYK 600
Score = 122 bits (305), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 91/151 (60%), Gaps = 16/151 (10%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP++Y P+IPM+LVNG EGIGTG+ TKI NPR+I DNI R++ E MKPWY++F
Sbjct: 851 IEPQYYAPVIPMILVNGTEGIGTGYSTKIAPCNPRDIYDNILRILNDEKTKTMKPWYRHF 910
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL-HGA-------- 770
G I+ ++++V + I+ +D + IT+L +G WT +YK LD L+ GA
Sbjct: 911 TGTIEKIDNNKYVSRAKYEIIGNDTIHITDLPIGTWTDNYKAFLDNLIDQGASQRAVDKK 970
Query: 771 ---EKDEVHPG----PGRKSHPRPIAPKSYK 794
EK+ V PG G K++ R K+ K
Sbjct: 971 AAKEKESVKPGVKGKAGSKTNSRTRNSKTNK 1001
>gi|311977868|ref|YP_003986988.1| DNA topoisomerase 2 [Acanthamoeba polyphaga mimivirus]
gi|76363498|sp|Q5UQE6.1|TOP2_MIMIV RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
II
gi|55417096|gb|AAV50746.1| topoisomerase II [Acanthamoeba polyphaga mimivirus]
gi|308204860|gb|ADO18661.1| DNA topoisomerase 2 [Acanthamoeba polyphaga mimivirus]
gi|339061418|gb|AEJ34722.1| topoisomerase II [Acanthamoeba polyphaga mimivirus]
Length = 1263
Score = 445 bits (1145), Expect = e-121, Method: Compositional matrix adjust.
Identities = 265/668 (39%), Positives = 369/668 (55%), Gaps = 125/668 (18%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERR--- 76
S K+ N S+E+ YQKK+ EHIL PDTYIGS+E T MW+ N + +
Sbjct: 2 SKTSKSNKNPKSIEEKYQKKNLHEHILHSPDTYIGSIEEKTCNMWIFNESAGEDDAKIIF 61
Query: 77 -EITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKD 135
EITYVPGLYKI+DE++VNA D+ +R N IK+ ++Q+T ISVWNNG GI V HK+
Sbjct: 62 KEITYVPGLYKIYDEVIVNAADHNKRCQTCNIIKVDIDQKTGQISVWNNGDGIDVAIHKE 121
Query: 136 EKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGA 195
++VP+MI FG LLTS+NY+ E+K GG+NG+GA
Sbjct: 122 HNIWVPSMI-------------------------FGELLTSTNYDKNEEKTVGGKNGFGA 156
Query: 196 KLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFK 255
KL NI+S +F +ET + K F Q + +NM P+I S K +TKITF PD KF
Sbjct: 157 KLANIYSVEFTIETVDANKGKKFFQRFTNNMYDKEEPKISSFKKSSYTKITFIPDFKKFG 216
Query: 256 MTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKI 315
+ LD D + L +R +D A +T + KV+ N +++ NF+ YV LY +G K+
Sbjct: 217 LKCLDDDTLALFKKRVFDLAMTT-NAKVYFNDKQIVQNNFKKYVGLYF----PEGSQHKV 271
Query: 316 IYENV-NPRWEVAIA--PSDR-GFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK 371
+ ++ + RW+V + P+D+ Q +SFVNSI T++GG HV+ VV IV + + KK
Sbjct: 272 VIDDTTHERWKVGVIYDPTDQLEHQNISFVNSICTSRGGTHVEQVVGQIVNGLKTAIVKK 331
Query: 372 NKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIV 431
K++ +KP +K ++ F++ IV
Sbjct: 332 AKNV------------------------------------QIKPAMIKENLIFFVDATIV 355
Query: 432 NPTFDSQTKENMTLQKGSFGS----------------TC--------------------- 454
NP FD+QTKE +T + +FGS C
Sbjct: 356 NPDFDTQTKEYLTKKAANFGSKFEVTEKFIKGVIKTGVCDQIIANAKAREEANLSKTDGK 415
Query: 455 ------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLL 508
KL +A+ AGTK CTLILTEGDSAK+ A+SGL V+GRD YGVFPLRGKLL
Sbjct: 416 GRGPVRYEKLYNAHKAGTKEGYKCTLILTEGDSAKTFAMSGLNVIGRDYYGVFPLRGKLL 475
Query: 509 NVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKG 568
NVR+A+ K+I +N EI + KI+GL+ K Y +D+K LRYG +MI+ DQD DG HIKG
Sbjct: 476 NVRDASPKKIADNEEITAIKKIVGLEQGKVY---DDLKGLRYGSIMILADQDVDGYHIKG 532
Query: 569 LIINFIHHNWPTLLRLP-FLEEFITPII----KATKAREELSFYSLPEFEEWKEETTNWH 623
LI+NFIH WP+L++ F++ F TP++ K ++ ++F S FEEWK+E +
Sbjct: 533 LIMNFIHCFWPSLVKYEGFIQSFATPLLKATKGKGKTKQVVAFTSPQSFEEWKKENNDGK 592
Query: 624 TYKIKYYK 631
+ IKYYK
Sbjct: 593 GWSIKYYK 600
Score = 121 bits (303), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 76/109 (69%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEP +Y PIIPM+LVNGAEGIGTG+ TKI NPR+I+ NIKR++ E+P MKPW+++
Sbjct: 858 RIEPVYYAPIIPMILVNGAEGIGTGYSTKIYPCNPRDIIANIKRLLTNENPKTMKPWFRH 917
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
G I+ ++++ + I+ D + IT+L VG WT +YK LD L+
Sbjct: 918 LTGTIEKIDGAKYISRAKYEIIGKDTIHITDLPVGIWTDNYKAFLDNLI 966
>gi|363540235|ref|YP_004894454.1| mg403 gene product [Megavirus chiliensis]
gi|350611400|gb|AEQ32844.1| DNA topoisomerase 2 [Megavirus chiliensis]
Length = 1257
Score = 445 bits (1145), Expect = e-121, Method: Compositional matrix adjust.
Identities = 264/656 (40%), Positives = 363/656 (55%), Gaps = 124/656 (18%)
Query: 32 VEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMER----REITYVPGLYKI 87
+E+ YQKK+ EHIL PDTYIGS+E T MW+ N + + +EI+YVPGLYKI
Sbjct: 13 IEEKYQKKNLHEHILHSPDTYIGSIEDKTCNMWIYNNKFKEGDAQIIFKEISYVPGLYKI 72
Query: 88 FDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGH 147
+DE+LVN+ D+ +R N IK+ +N+E+ ISVWNNG GI VVEHK+ K+
Sbjct: 73 YDEVLVNSADHSKRCKSCNMIKVDINEESGEISVWNNGDGIDVVEHKEHKI--------- 123
Query: 148 LLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVV 207
+VP+MIFG LLTS+NY+ E K+ GG+NG+GAKL NI+S++F +
Sbjct: 124 ----------------MVPSMIFGELLTSTNYDKGEKKIVGGKNGFGAKLANIYSTEFHI 167
Query: 208 ETSCSEYKKSFKQVWKDNMSKVTSPEIKSG-SKDDFTKITFTPDLTKFKMTSLDKDMVDL 266
ET ++ K F Q + DNM P+I + SK +TKI+F PD KF + L D+V L
Sbjct: 168 ETIDAKRGKKFYQKFTDNMYTKEKPKITTTKSKTPYTKISFIPDFKKFGLKGLTNDIVAL 227
Query: 267 ITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEV 326
+R YD A +T + KV+ N + + NF Y+ LY E + K++ + RW+V
Sbjct: 228 FKKRVYDLAMTT-NAKVYFNEKIISQNNFTKYIDLYFP---EGSEHKKVLDVTTHDRWKV 283
Query: 327 AIA--PSDR-GFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLF 383
P+D+ Q +SFVNSI T++GG HVD VV+ +VK + E V KK K
Sbjct: 284 CAVYDPTDQLEHQNISFVNSICTSRGGTHVDQVVNQVVKDLKEAVAKKVK---------- 333
Query: 384 GNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENM 443
G+ +KP +K ++ F++ IVNP FD+QTKE +
Sbjct: 334 --------------------------GLQVKPTMIKENLIFFVDATIVNPDFDTQTKEYL 367
Query: 444 TLQKGSFGSTCV-------------------------------------------PKLED 460
T + +FGS KL +
Sbjct: 368 TTKPANFGSNFTVTDIFIKKVIKTGVVSQIIANAQAKAEASLSKTDGKGRGAIRYEKLYN 427
Query: 461 ANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILE 520
A+ AGTK CTLILTEGDSAK+ A+SGL V+GRD YGVFPL+GK LNVR + +I E
Sbjct: 428 AHKAGTKEGYKCTLILTEGDSAKTFAMSGLNVIGRDYYGVFPLKGKPLNVRTKSPLKIAE 487
Query: 521 NAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPT 580
N EI + KI+GL+ K Y D+K LRYG +MI+ DQD DG HIKGLI+N IH WP+
Sbjct: 488 NEEITAIKKIIGLEQGKVYN---DLKELRYGSIMILADQDVDGYHIKGLIMNLIHRFWPS 544
Query: 581 LLRLP-FLEEFITPIIKATKA----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
L + F++ F TP++KATK R+ + F + FEEWK++ + + IKYYK
Sbjct: 545 LAKYEGFIQSFATPLLKATKGKGKTRKVVEFTNPQSFEEWKQKNNDGKGWTIKYYK 600
Score = 122 bits (305), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 91/151 (60%), Gaps = 16/151 (10%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP++Y P+IPM+LVNG EGIGTG+ TKI NPR+I DNI R++ E MKPWY++F
Sbjct: 851 IEPQYYAPVIPMILVNGTEGIGTGYSTKIAPCNPRDIYDNILRILNDEKTKTMKPWYRHF 910
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL-HGA-------- 770
G I+ ++++V + I+ +D + IT+L +G WT +YK LD L+ GA
Sbjct: 911 TGTIEKIDNNKYVSRAKYEIIGNDTIHITDLPIGTWTDNYKAFLDNLIDQGASQRAVDKK 970
Query: 771 ---EKDEVHPG----PGRKSHPRPIAPKSYK 794
EK+ V PG G K++ R K+ K
Sbjct: 971 AAKEKESVKPGVKGKAGSKTNSRTRNSKTNK 1001
>gi|313768187|ref|YP_004061618.1| hypothetical protein BpV1_188c [Bathycoccus sp. RCC1105 virus BpV1]
gi|312599794|gb|ADQ91815.1| hypothetical protein BpV1_188c [Bathycoccus sp. RCC1105 virus BpV1]
Length = 1073
Score = 445 bits (1144), Expect = e-121, Method: Compositional matrix adjust.
Identities = 264/645 (40%), Positives = 345/645 (53%), Gaps = 130/645 (20%)
Query: 37 QKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNAC 96
QK + +EHIL RPD+Y+G V + E W+ E + E++ + Y P L KIFDEILVNA
Sbjct: 6 QKLTHVEHILKRPDSYVGPVSRVAEPYWIY--ENDQFEKKTVVYSPALLKIFDEILVNAI 63
Query: 97 DNKQRDPK-MNCIKITVNQETNTISVWNNG--KGIPVVEHKDEKMFVPTMIFGHLLTSSN 153
D PK + + +++++ + I++ NNG GI V H+ E ++ P + FGHLLTS+N
Sbjct: 64 DRNSMYPKNVTSMSVSIDKISGEITIENNGPLGGIAVKMHEKEGLWNPELTFGHLLTSTN 123
Query: 154 YNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSE 213
Y+D + +V GGRNGYGAKL N++SSKF V+ E
Sbjct: 124 -------------------------YDDTQKRVVGGRNGYGAKLTNVYSSKFSVKIKDGE 158
Query: 214 YKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAY 272
K + Q W DNM +P+IK S ITF PD +F M+ +D + + +R Y
Sbjct: 159 NKCIYTQEWSDNMKTCGTPKIKKYSNATSSVSITFVPDWKRFGMSKMDDSIYKIFEKRVY 218
Query: 273 DA-AASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPS 331
DA ++++ KV G+ LP F Y K+YT + DE I + RW V IAPS
Sbjct: 219 DANICTSQNCKVKFQGDALPKATFNTYAKMYT-KSDE-------ICTFTSDRWSVCIAPS 270
Query: 332 DRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVK 391
D GF+ VSFVN I TTKGG HVD V + +IE + KK K
Sbjct: 271 DDGFEHVSFVNGICTTKGGSHVDHVSGILANGVIEDMAKKIK------------------ 312
Query: 392 NNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFG 451
L+P QVKN ++F+ +VNP+F SQ K TL+ FG
Sbjct: 313 ---------------------LRPQQVKNAFFVFVKATLVNPSFSSQVKSECTLKPQDFG 351
Query: 452 S--------------------------------------------TCVPKLEDANDAGTK 467
S T +PKL+DAN AGT
Sbjct: 352 SKFEPPKTFIKNILKTSVQSELTALSKFREMKELKKTDGSRKSKITGIPKLDDANKAGTT 411
Query: 468 NSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNL 527
+S CTLI+TEGDSAK+LA++GL VVGRD YGVFPLRGK NVR+A+ KQ+ EN E N+L
Sbjct: 412 HSGKCTLIITEGDSAKTLAIAGLSVVGRDHYGVFPLRGKCKNVRDASVKQLTENKEFNDL 471
Query: 528 VKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFL 587
KILGLQ K YT++ + LRYGRLMIMTD D DGSHIKGLI+N IH+ WP+LL+L F+
Sbjct: 472 KKILGLQQGKVYTSLSE---LRYGRLMIMTDADNDGSHIKGLILNMIHYFWPSLLKLKFV 528
Query: 588 EEFITPIIKATKAREELSFYSLPEFEEW-KEETTNWHTYKIKYYK 631
+TPIIKA+K E SFY+ F W W KIKYYK
Sbjct: 529 VSMVTPIIKASKGSETKSFYTDSTFRHWYGNGKAGW---KIKYYK 570
Score = 112 bits (280), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP++Y+PI+P VLVNG EGIGTG+ + IP NP +I NI+R+IRGE +PMKPW+
Sbjct: 783 QIEPDYYVPILPTVLVNGTEGIGTGFSSYIPPFNPLDIKHNIERIIRGETVVPMKPWFDK 842
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
F G + D ++ G + + +TEL G+WT DYK+ LDTL+
Sbjct: 843 FTGRVFSNEDGLWITEG-VWKYSGKNVLVTELPPGRWTQDYKEYLDTLI 890
>gi|371943700|gb|AEX61528.1| DNA topoisomerase 2 [Megavirus courdo7]
Length = 1249
Score = 444 bits (1143), Expect = e-121, Method: Compositional matrix adjust.
Identities = 264/656 (40%), Positives = 363/656 (55%), Gaps = 124/656 (18%)
Query: 32 VEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMER----REITYVPGLYKI 87
+E+ YQKK+ EHIL PDTYIGS+E T MW+ N + + +EI+YVPGLYKI
Sbjct: 13 IEEKYQKKNLHEHILHSPDTYIGSIEDKTCNMWIYNNKFKEGDAQIIFKEISYVPGLYKI 72
Query: 88 FDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGH 147
+DE+LVN+ D+ +R N IK+ +N+E+ ISVWNNG GI VVEHK+ K+
Sbjct: 73 YDEVLVNSADHSKRCKSCNMIKVDINEESGEISVWNNGDGIDVVEHKEHKI--------- 123
Query: 148 LLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVV 207
+VP+MIFG LLTS+NY+ E K+ GG+NG+GAKL NI+S++F +
Sbjct: 124 ----------------MVPSMIFGELLTSTNYDKGEKKIVGGKNGFGAKLANIYSTEFHI 167
Query: 208 ETSCSEYKKSFKQVWKDNMSKVTSPEIKSG-SKDDFTKITFTPDLTKFKMTSLDKDMVDL 266
ET ++ K F Q + DNM P+I + SK +TKI+F PD KF + L D+V L
Sbjct: 168 ETIDAKRGKKFYQKFTDNMYTKEKPKITTTKSKTPYTKISFIPDFKKFGLKGLTNDIVAL 227
Query: 267 ITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEV 326
+R YD A +T + KV+ N + + NF Y+ LY E + K++ + RW+V
Sbjct: 228 FKKRVYDLAMTT-NAKVYFNEKIISQNNFTKYIDLYFP---EGSEHKKVLDVTTHDRWKV 283
Query: 327 AIA--PSDR-GFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLF 383
P+D+ Q +SFVNSI T++GG HVD VV+ +VK + E V KK K
Sbjct: 284 CAVYDPTDQLEHQNISFVNSICTSRGGTHVDQVVNQVVKDLKEAVAKKVK---------- 333
Query: 384 GNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENM 443
G+ +KP +K ++ F++ IVNP FD+QTKE +
Sbjct: 334 --------------------------GLQVKPTMIKENLIFFVDATIVNPDFDTQTKEYL 367
Query: 444 TLQKGSFGSTCV-------------------------------------------PKLED 460
T + +FGS KL +
Sbjct: 368 TTKPVNFGSNFTVTDIFIKKVIKTGVVSQIIANAQAKAEASLSKTDGKGRGAIRYEKLYN 427
Query: 461 ANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILE 520
A+ AGTK CTLILTEGDSAK+ A+SGL V+GRD YGVFPL+GK LNVR + +I E
Sbjct: 428 AHKAGTKEGYKCTLILTEGDSAKTFAMSGLNVIGRDYYGVFPLKGKPLNVRTKSPLKIAE 487
Query: 521 NAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPT 580
N EI + KI+GL+ K Y D+K LRYG +MI+ DQD DG HIKGLI+N IH WP+
Sbjct: 488 NEEITAIKKIIGLEQGKVYN---DLKELRYGSIMILADQDVDGYHIKGLIMNLIHRFWPS 544
Query: 581 LLRLP-FLEEFITPIIKATKA----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
L + F++ F TP++KATK R+ + F + FEEWK++ + + IKYYK
Sbjct: 545 LAKYEGFIQSFATPLLKATKGKGKTRKVVEFTNPQSFEEWKQKNNDGKGWTIKYYK 600
Score = 122 bits (305), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 91/151 (60%), Gaps = 16/151 (10%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP++Y P+IPM+LVNG EGIGTG+ TKI NPR+I DNI R++ E MKPWY++F
Sbjct: 851 IEPQYYAPVIPMILVNGTEGIGTGYSTKIAPCNPRDIYDNILRILNDEKTKTMKPWYRHF 910
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL-HGA-------- 770
G I+ ++++V + I+ +D + IT+L +G WT +YK LD L+ GA
Sbjct: 911 TGTIEKIDNNKYVSRAKYEIIGNDTIHITDLPIGTWTDNYKAFLDNLIDQGASQRAVDKK 970
Query: 771 ---EKDEVHPG----PGRKSHPRPIAPKSYK 794
EK+ V PG G K++ R K+ K
Sbjct: 971 AAKEKESVKPGVKGKAGSKTNSRTRNSKTNK 1001
>gi|312599337|gb|ADQ91360.1| hypothetical protein BpV2_193c [Bathycoccus sp. RCC1105 virus BpV2]
Length = 1073
Score = 444 bits (1142), Expect = e-121, Method: Compositional matrix adjust.
Identities = 263/644 (40%), Positives = 345/644 (53%), Gaps = 128/644 (19%)
Query: 37 QKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNAC 96
QK + +EHIL RPD+Y+G V + E W+ E E++ + Y P L KIFDEILVNA
Sbjct: 6 QKLTHVEHILKRPDSYVGPVSRVAEPYWIY--ENGSFEKKTVMYSPALLKIFDEILVNAI 63
Query: 97 DNKQRDPK-MNCIKITVNQETNTISVWNNG--KGIPVVEHKDEKMFVPTMIFGHLLTSSN 153
D PK + + +++++ + I++ NNG GI V H+ E ++ P + FGHLLTS+
Sbjct: 64 DRNSMYPKNVTSMSVSIDKTSGQITIENNGPLGGIAVKMHEKEGLWNPELTFGHLLTST- 122
Query: 154 YNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSE 213
NY+D + ++ GGRNGYGAKL N++SS F ++ E
Sbjct: 123 ------------------------NYDDTQKRLVGGRNGYGAKLTNVYSSMFSIKIKDGE 158
Query: 214 YKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAY 272
K + Q W DNM +P+IK S ITF PD +F M+ +D + + +R Y
Sbjct: 159 NKCIYTQEWSDNMRTCGTPKIKKYSNATSSVSITFVPDWKRFGMSKMDDSIYKIFEKRVY 218
Query: 273 DA-AASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPS 331
DA ++++ KV G+ LP F Y K+YT + DE I + RW V IAPS
Sbjct: 219 DANICTSQNCKVKFQGDALPKATFNTYAKMYT-KSDE-------ICTFTSDRWSVCIAPS 270
Query: 332 DRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVK 391
D GF+ VSFVN I TTKGG HVD V + IIE + KK K
Sbjct: 271 DDGFEHVSFVNGICTTKGGSHVDHVSGILANGIIEDMAKKIK------------------ 312
Query: 392 NNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFG 451
L+P QVKN ++F+ +VNP+F SQ K TL+ FG
Sbjct: 313 ---------------------LRPQQVKNAFFVFVKATLVNPSFSSQVKSECTLKPQDFG 351
Query: 452 S--------------------------------------------TCVPKLEDANDAGTK 467
S T +PKL+DAN AGT
Sbjct: 352 SKFEPPKTFIKNILKTGIQSELMALSKFREMKELKKTDGSRKSKITGIPKLDDANKAGTT 411
Query: 468 NSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNL 527
+S CTLI+TEGDSAK+LA++GL VVGRD YGVFPLRGK NVR+A+ KQ+ EN E N+L
Sbjct: 412 HSGKCTLIVTEGDSAKTLAIAGLSVVGRDHYGVFPLRGKCKNVRDASVKQLTENKEFNDL 471
Query: 528 VKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFL 587
KILGLQ K YT++ + LRYGRLMIMTD D DGSHIKGLI+N IH+ WP+LL+L F+
Sbjct: 472 KKILGLQQGKVYTSLSE---LRYGRLMIMTDADNDGSHIKGLILNMIHYFWPSLLKLNFV 528
Query: 588 EEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+TPIIKATK E SFY+ F +W T +KIKYYK
Sbjct: 529 VSMVTPIIKATKGSETKSFYTDSTFRQW--YGTGKAGWKIKYYK 570
Score = 110 bits (275), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP++Y+PI+P VLVNG EGIGTG+ + IP NP +I NI+R+I GE+ +PMKPW+
Sbjct: 783 QIEPDYYVPILPTVLVNGTEGIGTGFSSYIPPFNPSDIKHNIERIINGENVIPMKPWFDK 842
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
F G + D ++ G + + +TEL G+WT DYK+ LDTL+
Sbjct: 843 FTGRVFSNEDGLWITEG-VWKSSGKSVIVTELPPGRWTQDYKEYLDTLI 890
>gi|448928070|gb|AGE51642.1| DNA topoisomerase II [Paramecium bursaria Chlorella virus CviKI]
Length = 1064
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 259/640 (40%), Positives = 363/640 (56%), Gaps = 122/640 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQ EH+L RPDTYIGSV P T+ W+ + R+++TY P L KIFDEI+ N+
Sbjct: 4 YQKLSQREHVLARPDTYIGSVAPQTKNEWVY--VDGKIIRKDVTYPPALLKIFDEIITNS 61
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D RD K+ +K+ +++++ +SV N+G IP+ +H EK ++P +IF
Sbjct: 62 ADCYNRDKKLTVLKVCIDEKS--VSVHNDGCNIPIEKHDVEKCYIPELIF---------- 109
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLL N++D E + GRNG G+K NIFS KF +E + K
Sbjct: 110 ---------------GHLLAGENFDDSEQRTGAGRNGIGSKATNIFSKKFDIE--ICDGK 152
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K +KQ W++NMS ++ P++ + SKD + TF PD +F + S D D + ++ RR YD A
Sbjct: 153 KKYKQSWENNMSVMSKPKVTTCSKDSYITTTFFPDFERFGIESFDDDTMSIMVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A VKV LNG++L +KN +DY LY + E K +E+ W+VA++ SD F
Sbjct: 213 AVLNKVKVMLNGKRLEIKNTEDYFSLYVGNKTE----TKRAFEHTPENWDVAVSCSDE-F 267
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
VSFVNS+ T +GG HV+AV DA+ K ++E KK
Sbjct: 268 TPVSFVNSVVT-RGGTHVNAVTDAVAKAVVEAAAKKK----------------------- 303
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT----------- 444
+ +KP VK +++F+N +VNPTFDSQTKE +T
Sbjct: 304 ---------------IVVKPATVKGRMFVFVNATVVNPTFDSQTKEILTSRNARVTLSDT 348
Query: 445 -------------LQKGSFGSTCV-------------------PKLEDANDAGTKNSIDC 472
+Q+ + ++ V PKL DA AGTKNS C
Sbjct: 349 FVKKVVGVLLDAVIQETNVRTSLVDQKELKKTDGAKKSRVSGIPKLNDAAWAGTKNSKMC 408
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA++GL VVGR++YGVFPLRGKLLNVR+A+ I +N EI L +ILG
Sbjct: 409 TLILTEGDSAATLAIAGLSVVGRERYGVFPLRGKLLNVRDASVASITKNEEITALKQILG 468
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
LQ K Y +D +LRYG +MIMTD D DG+HI GL++NF H +P+LL +P FL++FI
Sbjct: 469 LQTGKVY---KDTSSLRYGHVMIMTDADVDGTHISGLVMNFFHSCFPSLLEIPGFLKKFI 525
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A + ++ FYSLP++E+W + T ++ Y+IKYYK
Sbjct: 526 TPIVVAKRGKDVREFYSLPDYEDWVKTTKDYSKYQIKYYK 565
Score = 133 bits (334), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 81/109 (74%), Gaps = 1/109 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE+Y+PIIP +LVNG+ GIGTGW T IP++NP++IVDN+KR+I GED + MKPWY+
Sbjct: 773 KIEPEYYVPIIPSILVNGSSGIGTGWSTNIPSYNPKDIVDNVKRLISGEDLVEMKPWYRG 832
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
FKG+I+ +V G + + + ++EL VGKWT DYK+ LD LL
Sbjct: 833 FKGKIEETSPGVYVTKG-LYMPKGKTIVVSELPVGKWTQDYKEYLDGLL 880
Score = 43.9 bits (102), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%)
Query: 849 DKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
D YDYLL M SLT+ER EL ++ EL+ L K TD+W DL +L
Sbjct: 1009 DGKYDYLLNMRISSLTLERATELEREAVKLNKELDDLSKTTETDMWKQDLTSL 1061
>gi|349603621|gb|AEP99412.1| DNA topoisomerase 2-beta-like protein, partial [Equus caballus]
Length = 333
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 222/383 (57%), Positives = 263/383 (68%), Gaps = 61/383 (15%)
Query: 73 MERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVE 132
M RE+T+VPGLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVE
Sbjct: 7 MNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVE 66
Query: 133 HKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNG 192
HK EK++VP +IF G LLTSSNY+D+E KVTGGRNG
Sbjct: 67 HKVEKVYVPALIF-------------------------GQLLTSSNYDDDEKKVTGGRNG 101
Query: 193 YGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLT 252
YGAKLCNIFS+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+
Sbjct: 102 YGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLS 161
Query: 253 KFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGD 311
KFKM LDKD+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G
Sbjct: 162 KFKMEKLDKDIVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGV 221
Query: 312 PVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK 371
+K+I+E N RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKK
Sbjct: 222 ALKVIHELANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVSKLIEVVKKK 281
Query: 372 NKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIV 431
NK G+++KPFQVKNHIW+FINCLI
Sbjct: 282 NK-----------------------------------AGVSVKPFQVKNHIWVFINCLIE 306
Query: 432 NPTFDSQTKENMTLQKGSFGSTC 454
NPTFDSQTKENMTLQ SFGS C
Sbjct: 307 NPTFDSQTKENMTLQPKSFGSKC 329
>gi|183987566|gb|ACC65773.1| topoisomerase II [Pleurotus pulmonarius]
Length = 692
Score = 441 bits (1134), Expect = e-120, Method: Compositional matrix adjust.
Identities = 232/497 (46%), Positives = 304/497 (61%), Gaps = 94/497 (18%)
Query: 190 RNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDD-FTKITFT 248
R+GYGAKL NI+S +F +ET+ K + Q W NM++V +I S+++ +T++TF
Sbjct: 1 RHGYGAKLANIYSLEFTIETADKVNGKKYSQTWTKNMTQVGKAKITKNSRNEEYTRVTFK 60
Query: 249 PDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR--- 305
P+LT+F MT +D D L+ +R YD A + KDVKV+LN E+L +K F+ YV++YT+
Sbjct: 61 PELTRFGMTHIDPDTAGLLRKRVYDMAGTAKDVKVYLNDERLKIKTFRQYVEMYTEAATV 120
Query: 306 --QDEDGDPVK----IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDA 359
++ G + +IYE ++PRWEVA A SD FQQVSF NSI+T KGG HV + D
Sbjct: 121 GAKENSGGAAQAKPTVIYEQISPRWEVAFATSDGTFQQVSFANSISTIKGGTHVTYIADQ 180
Query: 360 IVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVK 419
+ K II + KKNK +KP QVK
Sbjct: 181 LSKNIIAHIAKKNK------------------------------------AATVKPAQVK 204
Query: 420 NHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--------------------------- 452
NH+WIF+N LI NPTFDSQTKE +TL G FGS
Sbjct: 205 NHMWIFVNALIENPTFDSQTKETLTLPAGKFGSRPILSEEFMKKVQKSSVIDQVLNWAKF 264
Query: 453 -----------------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGR 495
T + KL DAN+AGTKN+ CTLILTEGDSAKSLAV+GL VVGR
Sbjct: 265 KADQQIKKTDGSKRNRLTGMAKLSDANNAGTKNAEKCTLILTEGDSAKSLAVAGLAVVGR 324
Query: 496 DKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMI 555
D +GVFPLRGKLLNVREA H QI++N EI N+ KI+GLQ++K+YT V +LRYGRLMI
Sbjct: 325 DNFGVFPLRGKLLNVREARHDQIMKNEEIQNIKKIMGLQHNKEYTNVS---SLRYGRLMI 381
Query: 556 MTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEE 614
MTDQD DGSHIKGL+INF+ H +P+LL++P FL EF+TPI++ TK + +F+++PE+E
Sbjct: 382 MTDQDHDGSHIKGLLINFLDHFYPSLLKVPEFLVEFVTPIVRVTKGNQRKNFFTIPEYET 441
Query: 615 WKEETTNWHTYKIKYYK 631
W EET + + KYYK
Sbjct: 442 WLEETPDSKKWSAKYYK 458
Score = 61.2 bits (147), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/25 (92%), Positives = 25/25 (100%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGW 684
+EPEWY+PIIPMVLVNGAEGIGTGW
Sbjct: 668 VEPEWYLPIIPMVLVNGAEGIGTGW 692
>gi|313768427|ref|YP_004062107.1| hypothetical protein MpV1_224c [Micromonas sp. RCC1109 virus MpV1]
gi|312599123|gb|ADQ91147.1| hypothetical protein MpV1_224c [Micromonas sp. RCC1109 virus MpV1]
Length = 1070
Score = 441 bits (1133), Expect = e-120, Method: Compositional matrix adjust.
Identities = 261/645 (40%), Positives = 350/645 (54%), Gaps = 130/645 (20%)
Query: 37 QKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNAC 96
QK + +EHIL RPD+Y+G VE +E W+++ T ++ + Y P L KIFDEILVNA
Sbjct: 5 QKLTHIEHILKRPDSYVGPVEQGSEPYWILDGST--FTKKNLKYSPALLKIFDEILVNAI 62
Query: 97 DNKQRDPK-MNCIKITVNQETNTISVWNNG--KGIPVVEHKDEKMFVPTMIFGHLLTSSN 153
D PK ++ I +T++++ ++++ NNG GI V H+ E ++ P ++FG
Sbjct: 63 DRNSLHPKNVSSISVTIDKDVGSVTIENNGPLGGISVKMHEKEGLWNPELVFG------- 115
Query: 154 YNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSE 213
HLLTS+NY+D + ++ GGRNGYGAKL NI+SS F + E
Sbjct: 116 ------------------HLLTSTNYDDSQKRIVGGRNGYGAKLANIYSSDFSIIIKDHE 157
Query: 214 YKKSFKQVWKDNMSKVTSPEIK--SGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRA 271
K+++ Q W NM+ P+IK SGS + ITFTP+ +F M+ +D + + +R
Sbjct: 158 TKQTYTQKWSKNMTVCDPPKIKKHSGSTSSVS-ITFTPEWKRFGMSKMDDAIYSIFQKRV 216
Query: 272 YDA-AASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAP 330
+DA +T + KV LNGE LP +NF+ Y K++ + +K I RW V I P
Sbjct: 217 WDANICTTSNCKVKLNGEILPKQNFEAYAKMH--------EGIKDIASFNGDRWSVCIGP 268
Query: 331 SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNV 390
S+ G +QVSFVN I TTKGG H+D V + I II+ + KK K
Sbjct: 269 SENGLEQVSFVNGICTTKGGTHIDHVANHIASGIIDDMAKKIK----------------- 311
Query: 391 KNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSF 450
LKP QVKN IF+ + NPTF SQ K TL+ F
Sbjct: 312 ----------------------LKPQQVKNTFTIFVKATLENPTFSSQVKSECTLKAQDF 349
Query: 451 GS--------------------------------------------TCVPKLEDANDAGT 466
GS T +PKL+DAN AGT
Sbjct: 350 GSKFEPPKNFVKNVLKTGIADELTALSKFKEMKELKKTDGARKSKITGIPKLDDANKAGT 409
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
S CTLI+TEGDSAK+LAV+GL VVGRD YGVFPLRGK NVR+++ Q+ N E N+
Sbjct: 410 AQSGKCTLIVTEGDSAKTLAVAGLSVVGRDHYGVFPLRGKCKNVRDSSVAQLTSNQEFND 469
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPF 586
L KILGLQ K+Y +D+ LRYGRLMIMTD D DGSHIKGLI+N IH+ WP+LL++ F
Sbjct: 470 LKKILGLQQGKEY---KDVSELRYGRLMIMTDADNDGSHIKGLILNMIHYFWPSLLKMNF 526
Query: 587 LEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+ +TPIIKATK + SFY+ F W + +KIKYYK
Sbjct: 527 VVSMVTPIIKATKGSDTKSFYTDSAFRTWYGSGKS--GWKIKYYK 569
Score = 112 bits (279), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/111 (48%), Positives = 76/111 (68%), Gaps = 2/111 (1%)
Query: 658 GR-IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWY 716
GR IEP++Y+P +PMVLVNG EGIGTG+ IP NP +I +NIKR + GE P+ MKPW+
Sbjct: 780 GRSIEPDFYMPTLPMVLVNGTEGIGTGFSCYIPPFNPDDIKENIKRSLEGESPIDMKPWF 839
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
+ FKG++ + D + + +L++TEL G+WT DYK+ LDTL+
Sbjct: 840 RGFKGKV-FKDDVGLWITEGVWRDTGSRLKVTELPPGRWTQDYKEYLDTLV 889
>gi|340025908|ref|NP_048939.2| DNA topoisomerase II [Paramecium bursaria Chlorella virus 1]
gi|338222067|gb|AAC96932.2| DNA topoisomerase II [Paramecium bursaria Chlorella virus 1]
Length = 1061
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 258/640 (40%), Positives = 362/640 (56%), Gaps = 122/640 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +Q EH+L RPDTYIGSV P T+ W+ + R+++TY P L KIFDEI+ N+
Sbjct: 4 YQKLTQREHVLARPDTYIGSVAPQTKNEWVY--VDGKIIRKDVTYSPALLKIFDEIITNS 61
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D RD K+ +K+ +++++ +SV N+G IP+ +H EK ++P +IF
Sbjct: 62 ADCYNRDKKLTVLKVCIDEKS--VSVHNDGCNIPIEKHDVEKCYIPELIF---------- 109
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLL N++D E + GRNG G+K NIFS KF VE + K
Sbjct: 110 ---------------GHLLAGENFDDTEQRTGAGRNGIGSKATNIFSKKFDVE--ICDGK 152
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K +KQ W++NMS ++ P++ + SKD + TF PD +F + S D D + ++ RR YD A
Sbjct: 153 KKYKQSWENNMSVMSKPKVTTCSKDSYITTTFFPDFERFGIDSFDDDTMSIMVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A VKV LNG++L +KN +DY LY + E K +E+ W+VA++ SD F
Sbjct: 213 AVLNKVKVMLNGKRLEIKNTEDYFSLYVGNKTE----TKRAFEHTPENWDVAVSCSDE-F 267
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
VSFVNS+ T +GG HV+AV DA+ K ++E KK
Sbjct: 268 TPVSFVNSVVT-RGGTHVNAVTDAVAKAVVEAAAKKK----------------------- 303
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT----------- 444
+ +KP VK +++F+N +VNPTFDSQTKE +T
Sbjct: 304 ---------------IVVKPMTVKGRMFVFVNATVVNPTFDSQTKEILTSRNARVTLSDT 348
Query: 445 -------------LQKGSFGSTCV-------------------PKLEDANDAGTKNSIDC 472
+Q+ + ++ V PKL DA AGT +S C
Sbjct: 349 FVKKAVGVLLDAVIQETNVRTSLVDQKELKKTDGAKKSRVSGIPKLNDAAWAGTNHSKMC 408
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA++GL VVGR++YGVFPLRGKLLNVR+A+ I +N EI L +ILG
Sbjct: 409 TLILTEGDSAATLAIAGLSVVGRERYGVFPLRGKLLNVRDASVASITKNEEITALKQILG 468
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
LQ K Y +D +LRYG +MIMTD D DG+HI GL++NF H +P+LL +P FL++FI
Sbjct: 469 LQTGKVY---KDTSSLRYGHVMIMTDADVDGTHISGLVMNFFHSCFPSLLEIPGFLKKFI 525
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A K ++ FYSLP++E+W + T ++ Y+IKYYK
Sbjct: 526 TPIVVAKKGKDVREFYSLPDYEDWVKTTKDYSKYQIKYYK 565
Score = 130 bits (328), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 80/109 (73%), Gaps = 1/109 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE Y+PIIP +LVNG+ GIGTGW T IP++NP++IVDN+KR+I GED + MKPWYK
Sbjct: 773 KIEPECYVPIIPSILVNGSSGIGTGWSTNIPSYNPKDIVDNVKRLISGEDLVEMKPWYKG 832
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
FKG+I +V G + + + + ++EL VGKWT DYK+ LD LL
Sbjct: 833 FKGKIMETSPGVYVTKG-LYMPNGKTIVVSELPVGKWTHDYKEHLDGLL 880
Score = 45.1 bits (105), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 849 DKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
D YDYLL M SLT+ER EL ++ EL+ L K TD+W++DL +L
Sbjct: 1009 DGKYDYLLNMRISSLTLERATELEREAVKLNKELDDLSKTTETDMWNNDLQSL 1061
>gi|183987568|gb|ACC65774.1| topoisomerase II [Sarcomyxa serotina]
Length = 696
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 230/507 (45%), Positives = 312/507 (61%), Gaps = 98/507 (19%)
Query: 190 RNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFT 248
R+GYGAKL NI+S +F VET+ ++ + +KQ W +NMSKV P+I K+ +++T+ITF
Sbjct: 1 RHGYGAKLTNIYSHEFTVETADAKTAQKYKQTWSNNMSKVGKPKITKNARGEEWTRITFR 60
Query: 249 PDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-----T 303
PDL +F M S+D+D L+ +R YD A + K++KVFLN ++L VKNF+ Y+++Y
Sbjct: 61 PDLKRFGMDSIDEDTAGLLRKRVYDMAGTVKNIKVFLNDDRLKVKNFKQYIEMYISSAAA 120
Query: 304 DRQDEDGDPVK----IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDA 359
+ D G + +IYE ++ RWEV A SD FQ +SF NSIATTKGG HV V D
Sbjct: 121 EATDNAGGAAQPKPTVIYEQISNRWEVGFAVSDGTFQHISFANSIATTKGGTHVTVVSDQ 180
Query: 360 IVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVK 419
I K +I + KKNK +K Q+K
Sbjct: 181 IAKNLITAIAKKNK------------------------------------AATVKAAQIK 204
Query: 420 NHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--------------------------- 452
NH+WIF+N LI NPTFDSQTKE MTL FG+
Sbjct: 205 NHMWIFVNALIENPTFDSQTKETMTLPSSKFGTKPVLTENFMKKVMKSPIIDHVLNWAKF 264
Query: 453 -----------------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGR 495
T +PKL DAN+AGTKN+ CTLILTEGDSAK+LAV+GLGVVGR
Sbjct: 265 KADQQIKKTDGTKRSRLTGLPKLADANNAGTKNASKCTLILTEGDSAKALAVAGLGVVGR 324
Query: 496 DKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMI 555
D +GVFPLRGK+LNVREA+H QI++N EI N+ I+GLQ++K YT V +LRYGRLMI
Sbjct: 325 DNFGVFPLRGKILNVREASHDQIMKNQEIQNIKTIMGLQHNKSYTGVS---SLRYGRLMI 381
Query: 556 MTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKA----REELSFYSLP 610
MTDQD DGSHIKGL+IN++ H +P+LL+LP FL EF+TPI++ K ++ F+++P
Sbjct: 382 MTDQDHDGSHIKGLLINYLDHFFPSLLKLPDFLVEFVTPIVRVWKGTGNKKQTKDFFTIP 441
Query: 611 EFEEWKEETTNWHTYKIKYYKVVYVTG 637
EFE+W+++T ++H ++ KY+K + +G
Sbjct: 442 EFEQWQQQTPDFHKWESKYFKGLGTSG 468
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/25 (84%), Positives = 25/25 (100%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGW 684
IEPE+Y+P+IP+VLVNGAEGIGTGW
Sbjct: 672 IEPEYYVPVIPLVLVNGAEGIGTGW 696
>gi|183987576|gb|ACC65778.1| topoisomerase II [Pleurotus columbinus]
Length = 692
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 231/497 (46%), Positives = 304/497 (61%), Gaps = 94/497 (18%)
Query: 190 RNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDD-FTKITFT 248
R+GYGAKL NI+S +F +ET+ K + Q W NM++V +I S+++ +T++TF
Sbjct: 1 RHGYGAKLANIYSLEFTIETADKVNGKKYSQTWTKNMTQVGKAKITKNSRNEEYTRVTFK 60
Query: 249 PDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR--- 305
P+LT+F MT +D D L+ +R YD A + KDVKV+LN E+L +K F+ YV++Y +
Sbjct: 61 PELTRFGMTHIDPDTAGLLRKRVYDMAGTVKDVKVYLNDERLKIKTFKQYVEMYIEAATA 120
Query: 306 --QDEDGDPVK----IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDA 359
++ G + +IYE ++PRWEVA A SD FQQVSF NSI+T KGG HV+ + D
Sbjct: 121 GAKENSGGAAQAKPTVIYEQISPRWEVAFATSDGTFQQVSFANSISTIKGGTHVNYIADQ 180
Query: 360 IVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVK 419
+ K II + KKNK +KP QVK
Sbjct: 181 LSKSIIAHIAKKNK------------------------------------AATVKPAQVK 204
Query: 420 NHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--------------------------- 452
NH+WIF+N LI NPTFDSQTKE +TL G FGS
Sbjct: 205 NHMWIFVNALIENPTFDSQTKETLTLPAGKFGSRPALSEEFMKKVQKSSIIDQVLNWAKF 264
Query: 453 -----------------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGR 495
T + KL DAN+AGTKN+ CTLILTEGDSAKSLAV+GL VVGR
Sbjct: 265 KADQQIKKTDGSKRNRLTGMAKLSDANNAGTKNAEKCTLILTEGDSAKSLAVAGLAVVGR 324
Query: 496 DKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMI 555
D +GVFPLRGKLLNVREA H QI++N EI N+ KI+GLQ++K+YT V +LRYGRLMI
Sbjct: 325 DNFGVFPLRGKLLNVREARHDQIMKNEEIQNIKKIMGLQHNKEYTNVS---SLRYGRLMI 381
Query: 556 MTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEE 614
MTDQD DGSHIKGL+INF+ H +P+LL++P FL EF+TPI++ TK + +F+++PE+E
Sbjct: 382 MTDQDHDGSHIKGLLINFLDHFYPSLLKVPEFLVEFVTPIVRVTKGNQRKNFFTIPEYET 441
Query: 615 WKEETTNWHTYKIKYYK 631
W EET + + KYYK
Sbjct: 442 WLEETPDSKKWTAKYYK 458
Score = 59.3 bits (142), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/25 (92%), Positives = 24/25 (96%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGW 684
+EPEWY PIIPMVLVNGAEGIGTGW
Sbjct: 668 VEPEWYSPIIPMVLVNGAEGIGTGW 692
>gi|158254107|gb|AAI54369.1| Top2a protein [Danio rerio]
Length = 349
Score = 439 bits (1129), Expect = e-119, Method: Compositional matrix adjust.
Identities = 216/352 (61%), Positives = 257/352 (73%), Gaps = 27/352 (7%)
Query: 17 NGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERR 76
N K K ++SVE+IYQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + +T M R
Sbjct: 14 NKALSKPKKDEKRLSVERIYQKKTQLEHILLRPDTYIGSVEPVTQQMWVFDEDTG-MNCR 72
Query: 77 EITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDE 136
+IT+VPGLYKIFDEILVNA DNKQRD MNCIK+T++ E NTISVWNNGKGIPVVEHK E
Sbjct: 73 DITFVPGLYKIFDEILVNAADNKQRDKTMNCIKVTIDPENNTISVWNNGKGIPVVEHKVE 132
Query: 137 KMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAK 196
K++VP +IF G LLTSSNY+D+E KVTGGRNGYGAK
Sbjct: 133 KVYVPALIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAK 167
Query: 197 LCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKM 256
LCNIFS KF VET+C E K+ FKQ W DNM + +IK DD+T ITF PDL KFKM
Sbjct: 168 LCNIFSLKFTVETACRESKRCFKQTWFDNMGRAGESKIKPFDGDDYTCITFQPDLAKFKM 227
Query: 257 TSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKI 315
+LDKD V L+TRRAYD A STK V+V LNG++LP+ NF+ YV LY D+ DE G P+ +
Sbjct: 228 QALDKDTVALLTRRAYDIAGSTKGVRVLLNGKRLPINNFRTYVDLYVKDKVDETGSPLTV 287
Query: 316 IYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEV 367
++E VN RWEV + S++GFQQVSFVNSIATTKGGRH D V D IV ++IEV
Sbjct: 288 VHEMVNERWEVCLTLSEKGFQQVSFVNSIATTKGGRHTDYVADQIVSKLIEV 339
>gi|183987586|gb|ACC65783.1| topoisomerase II [Pleurotus nebrodensis]
Length = 534
Score = 438 bits (1127), Expect = e-119, Method: Compositional matrix adjust.
Identities = 231/497 (46%), Positives = 303/497 (60%), Gaps = 94/497 (18%)
Query: 190 RNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDD-FTKITFT 248
R+GYGAKL NI+S +F +ET+ K + Q W NM++V +I + S+++ +T++TF
Sbjct: 1 RHGYGAKLANIYSLEFTIETADKVNGKKYSQTWTKNMTQVGKAKITNNSRNEEYTRVTFK 60
Query: 249 PDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDE 308
P+LT+F MT +D D L+ +R YD A + KDVKV+LN E+L +K F+ YV++Y +
Sbjct: 61 PELTRFGMTDIDPDTAGLLRKRVYDMAGTVKDVKVYLNNERLKIKTFKQYVEMYIEAATA 120
Query: 309 D-------GDPVK--IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDA 359
G K +IYE ++PRWEVA A SD FQQVSF NSI+T KGG HV+ + D
Sbjct: 121 GAKENFGGGAQAKPTVIYEQISPRWEVAFATSDGTFQQVSFANSISTIKGGTHVNYIADQ 180
Query: 360 IVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVK 419
+ K II + KKNK +KP QVK
Sbjct: 181 LSKSIIAHIAKKNK------------------------------------AATVKPAQVK 204
Query: 420 NHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--------------------------- 452
NH+WIF+N LI NPTFDSQTKE +TL G FGS
Sbjct: 205 NHMWIFVNALIENPTFDSQTKETLTLPAGKFGSRPALSEEFMKKVQKSSTIDQVLNWAKF 264
Query: 453 -----------------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGR 495
T + KL DAN+AGTKN+ CTLILTEGDSAKSLAV+GL VVGR
Sbjct: 265 KADQQIKKTDGSKRNRLTGMAKLSDANNAGTKNAEKCTLILTEGDSAKSLAVAGLAVVGR 324
Query: 496 DKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMI 555
D +GVFPLRGKLLNVREA H QI+++ EI N+ KI+GLQ++K+YT V +LRYGRLMI
Sbjct: 325 DNFGVFPLRGKLLNVREARHDQIMKSEEIQNIKKIMGLQHNKEYTNVS---SLRYGRLMI 381
Query: 556 MTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEE 614
MTDQD DGSHIKGL+INF+ H +P+LL++P FL EF+TPI++ TK + +F+++PE+E
Sbjct: 382 MTDQDHDGSHIKGLLINFLDHFYPSLLKVPEFLVEFVTPIVRVTKGNQRKNFFTIPEYET 441
Query: 615 WKEETTNWHTYKIKYYK 631
W EET + + KYYK
Sbjct: 442 WLEETPDSKKWTAKYYK 458
>gi|313844192|ref|YP_004061855.1| hypothetical protein OlV1_223c [Ostreococcus lucimarinus virus
OlV1]
gi|312599577|gb|ADQ91599.1| hypothetical protein OlV1_223c [Ostreococcus lucimarinus virus
OlV1]
Length = 1074
Score = 438 bits (1126), Expect = e-119, Method: Compositional matrix adjust.
Identities = 261/645 (40%), Positives = 344/645 (53%), Gaps = 128/645 (19%)
Query: 37 QKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNAC 96
QK + +EH+L RPD+Y+G V+ +E WL+++ N +++ I Y P L KIFDEILVNA
Sbjct: 6 QKLTHIEHVLKRPDSYVGPVDVSSEPYWLLHKTDNQFKKKNINYSPALLKIFDEILVNAI 65
Query: 97 DNKQRDPK-MNCIKITVNQETNTISVWNNG--KGIPVVEHKDEKMFVPTMIFGHLLTSSN 153
D PK + I + +++ET +++ NNG GI V H+ E ++ P + FGHLLTS+N
Sbjct: 66 DRNSVHPKSVTSISVGIDKETGAVTIENNGPLGGIGVRMHEKEGVWNPELTFGHLLTSTN 125
Query: 154 YNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSE 213
Y+D + ++ GGRNGYGAKL NI+SS+F + E
Sbjct: 126 -------------------------YDDTKKRIVGGRNGYGAKLTNIYSSEFSIVIKDHE 160
Query: 214 YKKSFKQVWKDNMSKVTSPEI--KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRA 271
K+++ Q W+ NM+ P+I SGS + ITFTPD +F M +D ++ + +R
Sbjct: 161 AKQTYTQKWEKNMTVCHPPKITKHSGSTSSVS-ITFTPDWRRFGMKKMDANIYKIFEKRV 219
Query: 272 YDA-AASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAP 330
+DA +T + KV GE LP +F+ Y K++ + VK + RW V I P
Sbjct: 220 WDANICTTPNCKVKFQGEVLPKTSFEAYAKMH--------EGVKDVCSVTTDRWSVCIGP 271
Query: 331 SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNV 390
S+ G +QVSFVN I+TTKGG HVD V + IIE + KK K
Sbjct: 272 SENGLEQVSFVNGISTTKGGTHVDHVASLLASGIIEEMAKKIK----------------- 314
Query: 391 KNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSF 450
LKP QVKN IF+ I NPTF SQ K T + F
Sbjct: 315 ----------------------LKPQQVKNTFNIFVKATIENPTFSSQVKSECTSKAQDF 352
Query: 451 GS--------------------------------------------TCVPKLEDANDAGT 466
GS T +PKL+DAN AGT
Sbjct: 353 GSKFEPPKSFVKNALKTGIQDELTALSKFKEMKELSKSDGTRKSKITGIPKLDDANKAGT 412
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
S CTLI+TEGDSAK+LAV+GL VVGRD YGVFPLRGK NVR+A+ Q+ N E N+
Sbjct: 413 AQSGKCTLIVTEGDSAKTLAVAGLSVVGRDHYGVFPLRGKCKNVRDASVTQLTSNQEFND 472
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPF 586
L KILGLQ K Y +D+ LRYGRLMIMTD D DGSHIKGLI+N IH+ WP+LL+L F
Sbjct: 473 LKKILGLQQGKDY---QDVSELRYGRLMIMTDADNDGSHIKGLILNMIHYFWPSLLKLGF 529
Query: 587 LEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+ +TPIIKA+K + SFY+ F W +KIKYYK
Sbjct: 530 VVSMVTPIIKASKGSQSKSFYTDSTFRSW--YGNGQPGWKIKYYK 572
Score = 106 bits (264), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Query: 658 GR-IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWY 716
GR IEP++Y+P +PMVLVNG EGIGTG+ +P NP++I DNI++ + G M+PW+
Sbjct: 783 GRPIEPDFYMPTLPMVLVNGTEGIGTGFSCYVPPFNPKDIKDNIQKALEGHGFTQMRPWF 842
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
K FKG+I +S + I +L+ITEL G+WT DYK+ LDTL+
Sbjct: 843 KGFKGKIFKEDESGSWIAEGIWHDTGSRLKITELPPGRWTQDYKEYLDTLV 893
>gi|183987584|gb|ACC65782.1| topoisomerase II [Pleurotus cornucopiae]
Length = 692
Score = 438 bits (1126), Expect = e-119, Method: Compositional matrix adjust.
Identities = 231/497 (46%), Positives = 304/497 (61%), Gaps = 94/497 (18%)
Query: 190 RNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDD-FTKITFT 248
RNGYGAKL NI+S +F +ET+ K + Q W NM++V +I S+++ +T++TF
Sbjct: 1 RNGYGAKLANIYSLEFTIETADKVNGKKYSQTWTKNMTQVGKAKITKNSRNEEYTRVTFK 60
Query: 249 PDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR--- 305
P+LT+F MT +D D L+ +R YD A + KDVKV+LN E+L +K F+ YV++Y +
Sbjct: 61 PELTRFGMTHIDPDTAGLLRKRVYDMAGTVKDVKVYLNDERLKIKTFKQYVEMYIEAATA 120
Query: 306 --QDEDGDPVK----IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDA 359
++ G + +IYE ++PRWEVA A SD FQQVSF NSI+T KGG HV+ + D
Sbjct: 121 GAKENSGGAAQAKPTVIYEQISPRWEVAFATSDGTFQQVSFANSISTIKGGTHVNYIADQ 180
Query: 360 IVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVK 419
+ K II + KKNK +KP QVK
Sbjct: 181 LSKSIIAHIAKKNK------------------------------------AATVKPAQVK 204
Query: 420 NHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--------------------------- 452
NH+WIF+N LI NPTFDSQTKE +TL G FGS
Sbjct: 205 NHMWIFVNALIENPTFDSQTKETLTLPAGKFGSRPALSEEFMKKVQKSSIIDQVLNWAKF 264
Query: 453 -----------------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGR 495
T + KL DAN+AGTKN+ TLILTEGDSAKSLAV+GL VVGR
Sbjct: 265 KADQQIKRTDGSKRNRLTGMAKLSDANNAGTKNAEKYTLILTEGDSAKSLAVAGLAVVGR 324
Query: 496 DKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMI 555
D +GVFPLRGKLLNVREA H QI++N EI N+ KI+GLQ++K+YT V +LRYGRLMI
Sbjct: 325 DNFGVFPLRGKLLNVREARHDQIMKNEEIQNIKKIMGLQHNKEYTNVS---SLRYGRLMI 381
Query: 556 MTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEE 614
MTDQDQDG+HIKGL+INF+ H +P+LL++P FL EF+TPI++ TK + +F+++PE+E
Sbjct: 382 MTDQDQDGTHIKGLLINFLDHFYPSLLKVPEFLVEFVTPIVRVTKGNQRKNFFTIPEYET 441
Query: 615 WKEETTNWHTYKIKYYK 631
W EET + + KYYK
Sbjct: 442 WLEETPDSKKWTAKYYK 458
Score = 61.2 bits (147), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/25 (92%), Positives = 25/25 (100%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGW 684
+EPEWY+PIIPMVLVNGAEGIGTGW
Sbjct: 668 VEPEWYLPIIPMVLVNGAEGIGTGW 692
>gi|183987572|gb|ACC65776.1| topoisomerase II [Pleurotus eryngii var. ferulae]
Length = 692
Score = 438 bits (1126), Expect = e-119, Method: Compositional matrix adjust.
Identities = 231/497 (46%), Positives = 305/497 (61%), Gaps = 94/497 (18%)
Query: 190 RNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDD-FTKITFT 248
R+GYGAKL NI+S +F +ET+ K + Q W NM++V +I + S+++ +T++TF
Sbjct: 1 RHGYGAKLANIYSLEFTIETADKVNGKKYSQTWTKNMTQVGKAKITNNSRNEEYTRVTFK 60
Query: 249 PDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR--- 305
P+LT+F MT +D D L+ +R YD A + KDVKV+LN E+L +K F+ YV++Y +
Sbjct: 61 PELTRFGMTHIDADTAGLLRKRVYDMAGTVKDVKVYLNDERLKIKTFKQYVEMYIEAATA 120
Query: 306 --QDEDGDPVK----IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDA 359
++ G + +IYE ++PRWEVA A SD FQQVSFVNSI+T KGG HV+ + D
Sbjct: 121 GAKENSGGAAQAKPTVIYEQISPRWEVAFATSDGTFQQVSFVNSISTIKGGTHVNYIADQ 180
Query: 360 IVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVK 419
+ K II + KKNK +KP QVK
Sbjct: 181 LSKSIIAHIAKKNK------------------------------------AATVKPAQVK 204
Query: 420 NHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--------------------------- 452
NH+WIF+N LI NPTFDSQTKE +TL G FGS
Sbjct: 205 NHMWIFVNALIENPTFDSQTKETLTLPAGKFGSRPALSEEFMKKVQKSSIIDQVLNWAKF 264
Query: 453 -----------------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGR 495
T + KL DAN+AGTKN+ CTLILTEGDSAKSLAV+GL VVGR
Sbjct: 265 KADQQIKKTDGSKRNRLTGMAKLSDANNAGTKNAEKCTLILTEGDSAKSLAVAGLAVVGR 324
Query: 496 DKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMI 555
+GVFPLRGKLLNVREA H QI++N EI N+ KI+GLQ++K+YT+V +LRYGRLMI
Sbjct: 325 VNFGVFPLRGKLLNVREARHDQIMKNEEIQNIKKIMGLQHNKEYTSVS---SLRYGRLMI 381
Query: 556 MTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEE 614
MTDQD DGSHIKGL+INF+ H +P+LL++P FL EF+TPI++ TK + +F ++PE+E
Sbjct: 382 MTDQDHDGSHIKGLLINFLDHFYPSLLKVPEFLVEFVTPIVRVTKGNQRKNFLTIPEYET 441
Query: 615 WKEETTNWHTYKIKYYK 631
W EET + + KYYK
Sbjct: 442 WLEETPDSKKWTAKYYK 458
Score = 61.2 bits (147), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/25 (92%), Positives = 25/25 (100%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGW 684
+EPEWY+PIIPMVLVNGAEGIGTGW
Sbjct: 668 VEPEWYLPIIPMVLVNGAEGIGTGW 692
>gi|441432261|ref|YP_007354303.1| DNA topoisomerase 2 [Acanthamoeba polyphaga moumouvirus]
gi|440383341|gb|AGC01867.1| DNA topoisomerase 2 [Acanthamoeba polyphaga moumouvirus]
Length = 1253
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 261/652 (40%), Positives = 352/652 (53%), Gaps = 125/652 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETN----HMERREITYVPGLYKIFDEI 91
YQKK+ EHIL PDTYIGS+E T MW+ N + + +EITYVPGLYKI+DE+
Sbjct: 17 YQKKNLHEHILHSPDTYIGSIEDKTCHMWVYNEKAKDGDAQIIYKEITYVPGLYKIYDEV 76
Query: 92 LVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTS 151
LVNA D+ R N IK+ + Q+T I+VWNNG GI VVEHK+ K+ VP+MIFG LLTS
Sbjct: 77 LVNAADHNNRCSTCNTIKVNIEQDTGKITVWNNGDGIDVVEHKEHKILVPSMIFGELLTS 136
Query: 152 SNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSC 211
+NY+ E K GG+NG+G+KL NI+S++F +ET
Sbjct: 137 -------------------------TNYDKNEKKTVGGKNGFGSKLANIYSTEFHIETVD 171
Query: 212 SEYKKSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
++ K F Q + DNM P++ + +K +TKITF PD KF + L D++ L +R
Sbjct: 172 TKRGKKFYQKFTDNMYNKEKPKVTNIKTKTPYTKITFVPDYKKFGLKGLSDDILALFKKR 231
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIA- 329
YD A +T K+F N + +P NF Y+ LY +G K + + RW+V
Sbjct: 232 VYDLAMTTT-AKIFYNDKPIPQNNFNKYIDLYF----PEGTGHKKVLDISQNRWKVCAVY 286
Query: 330 -PSDR-GFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
P+D+ Q +SFVNSI T++GG HVD VV+ +VK + E V KK K
Sbjct: 287 DPTDQLEHQNISFVNSICTSRGGTHVDQVVNQVVKNLKEAVAKKVK-------------- 332
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
G+ +KP +K ++ FI+ I NP FD+QTKE +T +
Sbjct: 333 ----------------------GLQVKPTMIKENLIFFIDSTIENPDFDTQTKEYLTTKP 370
Query: 448 GSFGSTCVP-------------------------------------------KLEDANDA 464
+FGS V KL +A+ A
Sbjct: 371 TNFGSNFVATDDFIKKVIKTGVVSQIIANAQAKAEASLSKTDGKGKGPVRYEKLYNAHKA 430
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
GTK CTLILTEGDSAK+ A+SGL VVGRD YG+FPL+GK LNVR + + N EI
Sbjct: 431 GTKEGYKCTLILTEGDSAKAFAMSGLNVVGRDYYGIFPLKGKPLNVRTKSPAIVASNEEI 490
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
+ KI+GL+ K Y D+K LRYG +MI+ DQD DG HIKGLI+N IH WP+L +
Sbjct: 491 TAIKKIVGLEQGKVYN---DLKELRYGSIMILADQDVDGYHIKGLIMNLIHRFWPSLAKY 547
Query: 585 P-FLEEFITPIIKATKA----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
F++ F TP++KA+K RE + F + FEEWK + + + IKYYK
Sbjct: 548 EGFIQSFATPLLKASKGKGKNREVIEFTNPQSFEEWKSKNNDGKGWTIKYYK 599
Score = 120 bits (300), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 76/108 (70%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP +Y+P+IPM+LVNG EGIGTG+ T +P NPR+I +NI R++ + P MKPWY++F
Sbjct: 850 IEPVFYVPVIPMILVNGTEGIGTGYSTNVPPCNPRDIHENIIRILNDQKPRSMKPWYRHF 909
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
G ++ +++++ + I+ +D + IT+L +G WT DYK LD L+
Sbjct: 910 TGTVEKIDNNKYISRAKYEIIGNDTIHITDLPIGTWTDDYKAFLDNLI 957
>gi|357541785|gb|AET84547.1| DNA gyrase subunit B [Ostreococcus lucimarinus virus OlV4]
Length = 1074
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 261/645 (40%), Positives = 343/645 (53%), Gaps = 128/645 (19%)
Query: 37 QKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNAC 96
QK + +EH+L RPD+Y+G V+ +E WL+++ N +++ I Y P L KIFDEILVNA
Sbjct: 6 QKLTHIEHVLKRPDSYVGPVDVSSEPYWLLHKTDNQFKKKNINYSPALLKIFDEILVNAI 65
Query: 97 DNKQRDPK-MNCIKITVNQETNTISVWNNG--KGIPVVEHKDEKMFVPTMIFGHLLTSSN 153
D PK + I +++ET +++ NNG GI V H+ E ++ P + FGHLLTS+N
Sbjct: 66 DRNSVHPKSVTSISAGIDKETGAVTIENNGPLGGIGVRMHEKEGVWNPELTFGHLLTSTN 125
Query: 154 YNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSE 213
Y+D + ++ GGRNGYGAKL NI+SS+F + E
Sbjct: 126 -------------------------YDDTKKRIVGGRNGYGAKLTNIYSSEFSIVIKDHE 160
Query: 214 YKKSFKQVWKDNMSKVTSPEI--KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRA 271
K+++ Q W+ NM+ P+I SGS + ITFTPD +F M +D ++ + +R
Sbjct: 161 AKQTYTQKWEKNMTVCHPPKITKHSGSTSSVS-ITFTPDWRRFGMKKMDANIYKIFEKRV 219
Query: 272 YDA-AASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAP 330
+DA +T + KV GE LP +F+ Y K++ + VK + RW V I P
Sbjct: 220 WDANICTTPNCKVKFQGEVLPKTSFEAYAKMH--------EGVKDVCSVTTDRWSVCIGP 271
Query: 331 SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNV 390
S+ G +QVSFVN I+TTKGG HVD V + IIE + KK K
Sbjct: 272 SENGLEQVSFVNGISTTKGGTHVDHVASLLASGIIEEMAKKIK----------------- 314
Query: 391 KNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSF 450
LKP QVKN IF+ I NPTF SQ K T + F
Sbjct: 315 ----------------------LKPQQVKNTFNIFVKATIENPTFSSQVKSECTSKAQDF 352
Query: 451 GS--------------------------------------------TCVPKLEDANDAGT 466
GS T +PKL+DAN AGT
Sbjct: 353 GSKFEPPKSFVKNALKTGIQDELTALSKFKEMKELSKSDGTRKSKITGIPKLDDANKAGT 412
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
S CTLI+TEGDSAK+LAV+GL VVGRD YGVFPLRGK NVR+A+ Q+ N E N+
Sbjct: 413 AQSGKCTLIVTEGDSAKTLAVAGLSVVGRDHYGVFPLRGKCKNVRDASVTQLTSNQEFND 472
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPF 586
L KILGLQ K Y +D+ LRYGRLMIMTD D DGSHIKGLI+N IH+ WP+LL+L F
Sbjct: 473 LKKILGLQQGKDY---QDVSELRYGRLMIMTDADNDGSHIKGLILNMIHYFWPSLLKLGF 529
Query: 587 LEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+ +TPIIKA+K + SFY+ F W +KIKYYK
Sbjct: 530 VVSMVTPIIKASKGSQSKSFYTDSTFRSW--YGNGQPGWKIKYYK 572
Score = 106 bits (265), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Query: 658 GR-IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWY 716
GR IEP++Y+P +PMVLVNG EGIGTG+ +P NP++I DNI++ + G M+PW+
Sbjct: 783 GRPIEPDFYMPTLPMVLVNGTEGIGTGFSCYVPPFNPKDIKDNIQKALEGHGFTQMRPWF 842
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
K FKG+I +S + I +L+ITEL G+WT DYK+ LDTL+
Sbjct: 843 KGFKGKIFKEDESGSWIAEGIWHDTGSRLKITELPPGRWTQDYKEYLDTLM 893
>gi|388548828|gb|AFK66029.1| topoisomerase 2 [Ostreococcus lucimarinus virus OlV3]
Length = 1072
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 258/644 (40%), Positives = 339/644 (52%), Gaps = 126/644 (19%)
Query: 37 QKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNAC 96
QK + +EH+L RPD+Y+G V+ +E WL+++ N +++ I Y P L KIFDEILVNA
Sbjct: 6 QKLTHIEHVLKRPDSYVGPVDVSSEPYWLLHKTDNQFKKKNINYSPALLKIFDEILVNAI 65
Query: 97 DNKQRDPK-MNCIKITVNQETNTISVWNNG--KGIPVVEHKDEKMFVPTMIFGHLLTSSN 153
D PK + I + +++ET +I++ NNG GI V H+ E ++ P + FGHLLTS+N
Sbjct: 66 DRNSVHPKSVTSISVGIDKETGSITIENNGPLGGIGVRMHEKEGIWNPELTFGHLLTSTN 125
Query: 154 YNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSE 213
Y+D + ++ GGRNGYGAKL NI+SS+F + E
Sbjct: 126 -------------------------YDDTKKRIVGGRNGYGAKLTNIYSSEFSIVIKDGE 160
Query: 214 YKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAY 272
K+ + Q W +NM+ P+I K + ITF PD +F M +D + + +R +
Sbjct: 161 TKQCYTQKWNNNMTVCHPPKITKHSASTSSVSITFIPDWKRFGMNKMDASIYKIFEKRVW 220
Query: 273 DA-AASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPS 331
DA +T + KV GE LP +F+ Y K++ D I RW V I PS
Sbjct: 221 DANICTTPNCKVKFQGEALPKTSFEAYAKMHEGVTD--------ICSVTTDRWSVCIGPS 272
Query: 332 DRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVK 391
D G +QVSFVN I+TTKGG HVD V + II+ + KK K
Sbjct: 273 DNGLEQVSFVNGISTTKGGTHVDHVASYLAAGIIDEMAKKIK------------------ 314
Query: 392 NNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFG 451
LKP QVKN IF+ + NPTF SQ K T + FG
Sbjct: 315 ---------------------LKPQQVKNTFNIFVKATLENPTFSSQVKSECTSKAQDFG 353
Query: 452 S--------------------------------------------TCVPKLEDANDAGTK 467
S T +PKL+DAN AGT
Sbjct: 354 SKFDPPKNFVKNALKTGIQGELTALSKFKEMRELKKTDGARKSKITGIPKLDDANKAGTA 413
Query: 468 NSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNL 527
S CTLI+TEGDSAK+LAV+GL VVGRD YGVFPLRGK NVR+A+ Q+ N E N+L
Sbjct: 414 QSGKCTLIVTEGDSAKTLAVAGLSVVGRDHYGVFPLRGKCKNVRDASVAQLTSNQEFNDL 473
Query: 528 VKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFL 587
KILGLQ K Y +D+ LRYGRLMIMTD D DGSHIKGLI+N IH+ WP+LL+L F+
Sbjct: 474 KKILGLQQGKDY---QDVSELRYGRLMIMTDADNDGSHIKGLILNMIHYFWPSLLKLGFV 530
Query: 588 EEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+TPIIKA+K + SFY+ F W + +KIKYYK
Sbjct: 531 VSMVTPIIKASKGGQSKSFYTDSAFRTW--YGSGQAGWKIKYYK 572
Score = 101 bits (252), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 74/111 (66%), Gaps = 3/111 (2%)
Query: 658 GR-IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWY 716
GR IEP++Y+P +PMVLVNG EGIGTG+ +P NP++I +NI+R + G M PW+
Sbjct: 783 GRSIEPDFYMPTLPMVLVNGTEGIGTGFSCYVPPFNPKDIKENIQRALEGHSFKDMSPWF 842
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
+ FKG++ + D ++ G + +L++TEL G+WT DYK+ LD L+
Sbjct: 843 RGFKGKV-FKEDGTWITEG-VWRDTGSRLKVTELPPGRWTQDYKEYLDALV 891
>gi|448932811|gb|AGE56369.1| DNA topoisomerase II [Paramecium bursaria Chlorella virus NE-JV-1]
Length = 1057
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 254/640 (39%), Positives = 358/640 (55%), Gaps = 128/640 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K +Q +H+L RPDTYIGSV+ + ++ + + + R+++TY PG KIFDEILVN+
Sbjct: 5 YVKLTQRDHVLKRPDTYIGSVDKEVKNEYVFS--DSKIVRKDVTYSPGFLKIFDEILVNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D R+ M +K+T+ ++ ISV+N+G IP+ +H +
Sbjct: 63 ADCFNRESPMTTLKVTIAKDH--ISVFNDGSSIPIEKHSE-------------------- 100
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
VP +IFGHLL+ N++D E++ GRNGYG+KL NIFS F VE +Y+
Sbjct: 101 ------GCYVPELIFGHLLSGENFDDSEERTGAGRNGYGSKLTNIFSKIFGVEIYDGKYR 154
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
+ Q W DNMS ++ P+I +K TF PDL +F MTS+D D ++ RR YD A
Sbjct: 155 --YVQTWTDNMSSISVPKITKSTKPASIATTFYPDLARFGMTSIDDDTRSVLVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A V++FL+G++L VK+ +DY +LYT K ++E+V+ W+ + SD F
Sbjct: 213 AVLGKVRIFLDGKRLDVKSPRDYFELYTIS--------KPVFESVDG-WDFGVVGSDE-F 262
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
+ VSFVN+ AT +GG HVDA+ + I+K ++E KK
Sbjct: 263 KSVSFVNASAT-RGGSHVDAIANFIIKAVVEAASKKK----------------------- 298
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ--------- 446
+ +KP VKN +++F+N +VNPTF SQTK+ +T +
Sbjct: 299 ---------------ITVKPAVVKNKLFLFVNSRVVNPTFSSQTKDVLTSKNIKISPSPA 343
Query: 447 -----------------------------KGSFGS-----TCVPKLEDANDAGTKNSIDC 472
K + G+ T V KL DA AGTKNS C
Sbjct: 344 FLKKAVSLILDEVIAETNIRDNLVDMKSLKKTDGTKKVRLTGVKKLTDATWAGTKNSNMC 403
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA++GL V+GR++YGVFPLRGKLLN R+A+ I N EI + +ILG
Sbjct: 404 TLILTEGDSAATLAIAGLSVIGRERYGVFPLRGKLLNTRDASVSSITNNVEITAIKQILG 463
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
LQ K Y +D LRYG +MIMTD D DGSHI GL++NF H +P+LL +P FL++F
Sbjct: 464 LQTGKTY---KDASLLRYGSVMIMTDADVDGSHISGLVMNFFHSQFPSLLEIPGFLKKFT 520
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A+ +E + FYSLP+F+EWK+ET N Y KY+K
Sbjct: 521 TPIVVASYKKEIVEFYSLPDFDEWKKETPNHDKYSKKYFK 560
Score = 120 bits (301), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE+Y+PIIP +LVNGA GIGTG+ T +P++NP++I N+KR+I GED + M PWY+ F
Sbjct: 769 IEPEYYVPIIPFLLVNGANGIGTGFSTSVPSYNPKDIAANVKRLIAGEDMISMTPWYRGF 828
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
G+I+ FV ++I D ++EL VG WT DYK+ L++L+
Sbjct: 829 TGKIEEKEPGVFVCKSVVSI-DGKTATVSELPVGSWTNDYKEYLESLV 875
>gi|310831536|ref|YP_003970179.1| putative DNA topoisomerase IIA [Cafeteria roenbergensis virus
BV-PW1]
Length = 1101
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 264/643 (41%), Positives = 351/643 (54%), Gaps = 118/643 (18%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K SQ EHILLRP YIGSV TE MWL E N M++++IT++PGLYKI+DEI+VNA
Sbjct: 6 YDKVSQREHILLRPGMYIGSVSKNTEPMWLY--EDNKMQKKDITFIPGLYKIYDEIIVNA 63
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNG-KGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
D+ D N I+I VN + SV+NNG +GIPV EH+ K
Sbjct: 64 RDHSINDKSCNSIEIEVNTDEGYFSVYNNGDEGIPVKEHETHKT---------------- 107
Query: 155 NDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEY 214
++P+MIFG LLTSSNY+D + + TGG NG G+K N++S KF +E
Sbjct: 108 ---------LIPSMIFGELLTSSNYDDSKKRTTGGMNGLGSKCSNVWSKKFEIEVQDKTN 158
Query: 215 KKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
KK F Q+W+DNMS V P++ S S F K+T PDL +FK+ SL K + L +RAYD
Sbjct: 159 KKHFHQIWEDNMSVVNKPKVTSKSTKSFVKVTCYPDLERFKIKSLKKHL-PLFEKRAYDL 217
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVA-IAPSDR 333
A +T+ VKV NG + VKN QD++ LY D KI+ + NPR V I D
Sbjct: 218 ALTTEKVKVKFNGSLINVKNMQDFMDLYFP------DTAKIV-DTSNPRMHVGCIYLPDV 270
Query: 334 GFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNN 393
G + +S+VN I + +GG H + +VD +VK +I KK
Sbjct: 271 GHESISYVNGICSYRGGTHCNYIVDMVVKSLINDYIKKKDKD------------------ 312
Query: 394 KLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGST 453
+ + P +K+++ FIN +I NP+F SQ+KE +T + FG+
Sbjct: 313 -----------------IKISPALIKDNLVFFINSVIDNPSFSSQSKETLTTKPSDFGTV 355
Query: 454 C--------------------------------------------VPKLEDANDAGTKNS 469
+PKLEDAN AGTK++
Sbjct: 356 YKLNKTFMTKLSKSGIIKQIISLAKFKESVKMTKTDGRKTTVIRGIPKLEDANKAGTKDA 415
Query: 470 IDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVK 529
C L L EGDSA S+ +SGL R+ YG FPL+GKLLNVREA+ KQI+ N EI+NL K
Sbjct: 416 HKCGLYLAEGDSALSMILSGLSSKDRNFYGAFPLKGKLLNVREASVKQIMGNDEISNLKK 475
Query: 530 ILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL-RLPFLE 588
ILGL+ KY E+ TLRYG+++I+ D D DGSHIKGLI+N H WP LL R F+
Sbjct: 476 ILGLRNEFKYEMDEEFNTLRYGKVIILCDSDVDGSHIKGLILNMFHSMWPNLLKREGFIT 535
Query: 589 EFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+KATK +E L FY+L +++ W+ + N Y IKYYK
Sbjct: 536 TMNTPIVKATKGKEILKFYNLTDYDNWRND-NNTKGYYIKYYK 577
Score = 105 bits (262), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 76/108 (70%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPE+Y+PIIPM+LVNGA GIGTG+ T IP ++P+E+++ +K++I+GE + P+Y F
Sbjct: 796 VEPEFYLPIIPMILVNGATGIGTGFSTSIPCYHPQELIEVLKKLIKGEKYKKIHPYYHKF 855
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
+G++ + + V+G I + + + EL VG+WTT+YK L+ +L
Sbjct: 856 EGKLKKLDTTSYQVSGTYHIDKKNNIVVEELPVGEWTTNYKQFLEKML 903
>gi|428171891|gb|EKX40804.1| hypothetical protein GUITHDRAFT_113071 [Guillardia theta CCMP2712]
Length = 1372
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 255/667 (38%), Positives = 364/667 (54%), Gaps = 132/667 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQKK+QLEH+LLRPD Y+GS+E +T+ M + + +++ + R I+Y+PGL KIFDEILVNA
Sbjct: 272 YQKKTQLEHVLLRPDVYVGSMEQVTKQMLVYDVKSSSVRLRSISYIPGLLKIFDEILVNA 331
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEH-KDEKMFVPTMIFGHLLTSSNY 154
DNKQRD IK+ +++ T+ V+N+GKGIPV H K + +++P ++ G+LL
Sbjct: 332 ADNKQRDVATKQIKVKFDKKNATVQVYNDGKGIPVCRHAKYDDVYIPELVMGNLL----- 386
Query: 155 NDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEY 214
SN++D + ++ GGR+GYGAKL NIFSS F +ET S
Sbjct: 387 --------------------AGSNFDDTKTRLAGGRHGYGAKLTNIFSSVFTIETVDSSR 426
Query: 215 KKSFKQVWKDNMSKVTSPEIK--SGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAY 272
++Q W++NM+ P I+ +G +D+TK+TFT DL +F SLD D + L RR
Sbjct: 427 ALLYRQTWRNNMTTCEPPTIEKLTGKAEDYTKVTFTIDLKRFGKKSLDDDTIALWARRVV 486
Query: 273 DAAASTKDVKVFLNGEKLPVKNFQDYVKLY----TDRQDEDGDPVKIIYENVNPRWEVAI 328
D A +K ++NG + V++FQD + LY T + +G + E+ + RW+VA+
Sbjct: 487 DVAGCNNGLKCWINGTLVKVRSFQDLMLLYRSALTQEKGAEGAKAVEVIEDNSGRWKVAV 546
Query: 329 APSDRGFQ---QVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
+ +SFVNS+ T++GG H+ V D +K + V+ K KDL
Sbjct: 547 GSAVNNSSSELSMSFVNSVWTSRGGTHLKHVQDLFIKYVATVLNNKYKDL---------- 596
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTL 445
D+ R ++N++WI + LI NP+FD+Q KE +
Sbjct: 597 -----------------DVNER---------TIRNNMWIGVAALIENPSFDTQGKELLVT 630
Query: 446 QKGSFGS----------------------------------------------TCVPKLE 459
FGS +PKLE
Sbjct: 631 PTEKFGSEFKVSRKKMEEVVQKTEIVERIVLEGKLVKDLDKSSKTMGAWSQKRLLLPKLE 690
Query: 460 DANDAGTKNSIDCTLILTEGDSAKSL-AVSGLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
DAN AGT S +CTLILTEGDSAK + VSGL V+GRD+YGVFPL+GKL+NVREAT+ Q+
Sbjct: 691 DANWAGTAKSRECTLILTEGDSAKVVDMVSGLSVLGRDRYGVFPLKGKLINVREATNLQV 750
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKT---LRYGRLMIMTDQDQDGSHIKGLIINFIH 575
N E+ + ILGLQ S Y + + LRYG++M+MTDQD DGSHIKGL IN IH
Sbjct: 751 KNNTELAAIKAILGLQNSATYDLDKKESSAFPLRYGKVMLMTDQDHDGSHIKGLFINMIH 810
Query: 576 HNWPTLLRL-PFLEEFITPIIKATKAREEL--------SFYSLPEFEEWKE--ETTNWHT 624
WP LLR FL EF+TPI+K ++L +F++ EF++W + + + +
Sbjct: 811 AYWPELLRSNQFLFEFVTPIVKVYTGSQDLRKTNKAYKTFFTQIEFKQWWDSLQDKDRNK 870
Query: 625 YKIKYYK 631
+ IKYYK
Sbjct: 871 FHIKYYK 877
Score = 107 bits (268), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 75/121 (61%), Gaps = 14/121 (11%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIR-------GEDPL-- 710
IEP +YIPIIPM LVNGA+GIGTGW T IP++NP EI+ ++ MIR G++ L
Sbjct: 1003 IEPRYYIPIIPMTLVNGAQGIGTGWSTSIPSYNPFEIITILRSMIRESKGGGGGQESLRK 1062
Query: 711 --PMKPWYKNFKGEIDYCGDS-RFVVNGEIAILDDD--KLEITELQVGKWTTDYKDTLDT 765
+ PWY FKG I D RF +G + D + ++ +TEL +G WT D++D L+
Sbjct: 1063 SRELVPWYAGFKGTIQKHKDGERFTCSGCFEVEDTNPLRIRVTELPIGMWTEDFQDHLNR 1122
Query: 766 L 766
L
Sbjct: 1123 L 1123
Score = 50.8 bits (120), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 11/105 (10%)
Query: 801 EEEIEEVFHDNE-LAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMT 859
+EEIE+VF + + +A P+ G LE + E E E+ + + YLL M
Sbjct: 1271 QEEIEKVFTEKKHVAAPKSEGASLEYVAEEEEEEELKES----------NNGFAYLLQMP 1320
Query: 860 FWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
WS T ER+ +L K+ D EL LK +P D+W +LDAL K
Sbjct: 1321 MWSATRERREKLKKQVDQVEGELKRLKGISPEDIWLAELDALETK 1365
>gi|371945085|gb|AEX62906.1| DNA topoisomerase 2 [Moumouvirus Monve]
Length = 1007
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 261/652 (40%), Positives = 352/652 (53%), Gaps = 125/652 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETN----HMERREITYVPGLYKIFDEI 91
YQKK+ EHIL PDTYIGS+E T MW+ N + + +EITYVPGLYKI+DE+
Sbjct: 17 YQKKNLHEHILHSPDTYIGSIEDKTCHMWVYNEKAKDGDAQIIYKEITYVPGLYKIYDEV 76
Query: 92 LVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTS 151
LVNA D+ R N IK+ + Q+T I+VWNNG GI VVEHK+ K+ VP+MIFG LLTS
Sbjct: 77 LVNAADHNNRCSTCNTIKVNIEQDTGKITVWNNGDGIDVVEHKEHKILVPSMIFGELLTS 136
Query: 152 SNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSC 211
+NY+ E K GG+NG+G+KL NI+S++F +ET
Sbjct: 137 -------------------------TNYDKNEKKTVGGKNGFGSKLANIYSTEFHIETVD 171
Query: 212 SEYKKSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
++ K F Q + DNM P++ + +K +TKITF PD KF + L D++ L +R
Sbjct: 172 TKRGKKFYQKFTDNMYNKEKPKVTNIKTKTPYTKITFVPDYKKFGLKGLSDDILALFKKR 231
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIA- 329
YD A +T K+F N + +P NF Y+ LY +G K + + RW+V
Sbjct: 232 VYDLAMTTT-AKIFYNDKPIPQNNFNKYIDLYF----PEGTGHKKVLDISQNRWKVCAVY 286
Query: 330 -PSDR-GFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
P+D+ Q +SFVNSI T++GG HVD VV+ +VK + E V KK K
Sbjct: 287 DPTDQLEHQNISFVNSICTSRGGTHVDQVVNQVVKNLKEAVAKKVK-------------- 332
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
G+ +KP +K ++ FI+ I NP FD+QTKE +T +
Sbjct: 333 ----------------------GLQVKPTMIKENLIFFIDSTIENPDFDTQTKEYLTTKP 370
Query: 448 GSFGSTCVP-------------------------------------------KLEDANDA 464
+FGS V KL +A+ A
Sbjct: 371 TNFGSNFVATDDFIKKVIKTGVVSQIIANAQAKAEASLSKTDGKGKGPVRYEKLYNAHKA 430
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
GTK CTLILTEGDSAK+ A+SGL VVGRD YG+FPL+GK LNVR + + N EI
Sbjct: 431 GTKEGYKCTLILTEGDSAKAFAMSGLNVVGRDYYGIFPLKGKPLNVRTKSPAIVASNEEI 490
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
+ KI+GL+ K Y D+K LRYG +MI+ DQD DG HIKGLI+N IH WP+L +
Sbjct: 491 TAIKKIVGLEQGKVYN---DLKELRYGSIMILADQDVDGYHIKGLIMNLIHRFWPSLAKY 547
Query: 585 P-FLEEFITPIIKATKA----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
F++ F TP++KA+K RE + F + FEEWK + + + IKYYK
Sbjct: 548 EGFIQSFATPLLKASKGKGKNREVIEFTNPQSFEEWKSKNNDGKGWTIKYYK 599
Score = 120 bits (302), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 77/109 (70%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP +Y+P+IPM+LVNG EGIGTG+ T +P NPR+I +NI R++ + P MKPWY++F
Sbjct: 850 IEPVFYVPVIPMILVNGTEGIGTGYSTNVPPCNPRDIHENIIRILNDQKPRSMKPWYRHF 909
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLH 768
G ++ +++++ + I+ +D + IT+L +G WT DYK LD L++
Sbjct: 910 TGTVEKIDNNKYITRAKYEIIGNDSIHITDLPIGTWTDDYKAFLDNLIN 958
>gi|34786040|gb|AAH57873.1| Top2a protein [Mus musculus]
Length = 345
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 210/333 (63%), Positives = 253/333 (75%), Gaps = 27/333 (8%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 26 RLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIF 84
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EK++VP +IF
Sbjct: 85 DEILVNAADNKQRDPKMSCIRVTIDPENNVISIWNNGKGIPVVEHKVEKIYVPALIF--- 141
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 142 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 179
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ EYKK FKQ W DNM + E+K S +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 180 TASREYKKMFKQTWMDNMGRAGDMELKPFSGEDYTCITFQPDLSKFKMQSLDKDIVALMV 239
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG LPVK F+ YV LY D+ DE G+ +K+I+E VNPRWEV
Sbjct: 240 RRAYDIAGSTKDVKVFLNGNSLPVKGFRSYVDLYLKDKVDETGNSLKVIHEQVNPRWEVC 299
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAI 360
+ S+RGFQQ+SFVNSIAT+KGGRHVD V D I
Sbjct: 300 LTMSERGFQQISFVNSIATSKGGRHVDYVADQI 332
>gi|356980038|gb|AET43517.1| DNA topoisomerase IIB [Micromonas pusilla virus PL1]
Length = 1036
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 259/645 (40%), Positives = 346/645 (53%), Gaps = 130/645 (20%)
Query: 37 QKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNAC 96
QK + +EHIL RPD+Y+G VE TE W++ + + ++ + Y P L KIFDEILVNA
Sbjct: 5 QKLTHIEHILKRPDSYVGPVELGTEHYWVL--QGDAFTKKNLKYSPALLKIFDEILVNAI 62
Query: 97 DNKQRDPK-MNCIKITVNQETNTISVWNNG--KGIPVVEHKDEKMFVPTMIFGHLLTSSN 153
D PK + I ++++++ ++++ NNG GI + H+ E ++ P + FG
Sbjct: 63 DRNSLHPKGVTSISVSIDKDRGSVTIENNGPLGGIGIRMHEKEGLWNPELTFG------- 115
Query: 154 YNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSE 213
HLLTS+NY+D + +V GGRNGYGAKL NI+SS+F V E
Sbjct: 116 ------------------HLLTSTNYDDNQKRVVGGRNGYGAKLTNIYSSEFSVIIKDHE 157
Query: 214 YKKSFKQVWKDNMSKVTSPEIK--SGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRA 271
K+++ Q W +NM+ P+IK SG+ + ITFTPD +F M+ +D + + +R
Sbjct: 158 VKQTYTQGWSNNMTTCHQPKIKKHSGATSSVS-ITFTPDWKRFGMSKMDDSIYQIFQKRV 216
Query: 272 YDA-AASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAP 330
+DA +T + KV NG+ LP +F+ Y K++ + V+ + V+ RW V I P
Sbjct: 217 WDANICTTPNCKVKFNGDVLPKTSFEAYAKMH--------EGVENVCSVVSDRWSVCIGP 268
Query: 331 SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNV 390
++ G +QVSFVN I TTKGG HVD V + IIE + KK K
Sbjct: 269 AENGMEQVSFVNGICTTKGGNHVDHVASLVASGIIEDMAKKIK----------------- 311
Query: 391 KNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSF 450
LKP QVKN IF+ + NPTF SQ K T + F
Sbjct: 312 ----------------------LKPQQVKNTFNIFVKATLENPTFSSQVKSECTSKSQDF 349
Query: 451 GS--------------------------------------------TCVPKLEDANDAGT 466
GS T +PKL+DAN AGT
Sbjct: 350 GSKFDPPKNFIKNALKTGIQDELLALSKFKEMKELKKSDGARKSKITGIPKLDDANKAGT 409
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
S CTLI+TEGDSAK+LAV+GL VVGRD YGVFPLRGK NVR+ + Q+ N E N+
Sbjct: 410 AQSGKCTLIVTEGDSAKTLAVAGLSVVGRDHYGVFPLRGKCKNVRDVSVAQLSSNQEFND 469
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPF 586
L KILGLQ K Y +D+ LRYGRLMIMTD D DGSHIKGLI+N IH+ WP+LL+L F
Sbjct: 470 LKKILGLQQGKDY---KDVSELRYGRLMIMTDADNDGSHIKGLILNMIHYFWPSLLKLGF 526
Query: 587 LEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+ +TPIIKATK E +SFY+ F W +KIKYYK
Sbjct: 527 VVSMVTPIIKATKGSESMSFYTDSAFRTWYGSGKG--GWKIKYYK 569
Score = 114 bits (286), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 76/111 (68%), Gaps = 2/111 (1%)
Query: 658 GR-IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWY 716
GR IEP++Y+P +PMVLVNG EGIGTG+ +P NP +I +NIKR + GED + MKPW+
Sbjct: 780 GRPIEPDFYMPTLPMVLVNGTEGIGTGFSCYVPPFNPEDIKENIKRTLEGEDLIEMKPWF 839
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
+ FKG + Y D+ + I +L++TEL G+WT DYK+ LDTL+
Sbjct: 840 RGFKGRV-YKDDTGLWITEGIYRDTGSRLKVTELPPGRWTQDYKEYLDTLV 889
>gi|357542191|gb|AET84951.1| DNA topoisomerase IIB [Micromonas pusilla virus SP1]
Length = 1070
Score = 435 bits (1118), Expect = e-118, Method: Compositional matrix adjust.
Identities = 259/645 (40%), Positives = 347/645 (53%), Gaps = 130/645 (20%)
Query: 37 QKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNAC 96
QK + +EHIL RPD+Y+G VE TE W++ + + ++ + Y P L KIFDEILVNA
Sbjct: 5 QKLTHIEHILKRPDSYVGPVELGTEHYWVL--QGDAFTKKNLKYSPALLKIFDEILVNAI 62
Query: 97 DNKQRDPK-MNCIKITVNQETNTISVWNNG--KGIPVVEHKDEKMFVPTMIFGHLLTSSN 153
D PK + I ++++++ ++++ NNG GI V H+ E ++ P + FG
Sbjct: 63 DRNSLHPKGVTSISVSIDKDQGSVTIENNGPLGGIGVRMHEKEGLWNPELTFG------- 115
Query: 154 YNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSE 213
HLLTS+NY+D + +V GGRNGYGAKL NI+SS+F V E
Sbjct: 116 ------------------HLLTSTNYDDNQKRVVGGRNGYGAKLTNIYSSEFSVIIKDHE 157
Query: 214 YKKSFKQVWKDNMSKVTSPEIK--SGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRA 271
K+++ Q W +NM+ P+IK +G+ + ITFTPD +F M+ +D + + +R
Sbjct: 158 VKQTYTQGWSNNMTTCHQPKIKKHAGAMSSVS-ITFTPDWKRFGMSKMDDSIYQIFQKRV 216
Query: 272 YDA-AASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAP 330
+DA +T + KV NG+ LP +F+ Y K++ + V+ + V+ RW V I P
Sbjct: 217 WDANICTTPNCKVKFNGDVLPKTSFEAYAKMH--------EGVENVCSVVSDRWSVCIGP 268
Query: 331 SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNV 390
++ G +QVSFVN I TTKGG HVD V + IIE + KK K
Sbjct: 269 AENGMEQVSFVNGICTTKGGNHVDHVASLVASGIIEDMAKKIK----------------- 311
Query: 391 KNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSF 450
LKP QVKN IF+ + NPTF SQ K T + F
Sbjct: 312 ----------------------LKPQQVKNTFNIFVKATLENPTFSSQVKSECTSKSQDF 349
Query: 451 GS--------------------------------------------TCVPKLEDANDAGT 466
GS T +PKL+DAN AGT
Sbjct: 350 GSKFDPPKNFIKNALKTGIQDELLALSKFKEMKELKKSDGARKSKITGIPKLDDANKAGT 409
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
S CTLI+TEGDSAK+LAV+GL VVGRD YGVFPLRGK NVR+ + Q+ N E N+
Sbjct: 410 AQSGKCTLIVTEGDSAKTLAVAGLSVVGRDHYGVFPLRGKCKNVRDVSVAQLSSNQEFND 469
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPF 586
L KILGLQ K Y +D+ LRYGRLMIMTD D DGSHIKGLI+N IH+ WP+LL+L F
Sbjct: 470 LKKILGLQQGKDY---KDVSELRYGRLMIMTDADNDGSHIKGLILNMIHYFWPSLLKLGF 526
Query: 587 LEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+ +TPIIKATK E +SFY+ F W + +KIKYYK
Sbjct: 527 VVSMVTPIIKATKGSETMSFYTDSAFRSW--YGSGKAGWKIKYYK 569
Score = 115 bits (289), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 77/111 (69%), Gaps = 2/111 (1%)
Query: 658 GR-IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWY 716
GR IEP++Y+P +PMVLVNG EGIGTG+ +P NP++I +NIKR + GED + MKPW+
Sbjct: 780 GRPIEPDFYMPTLPMVLVNGTEGIGTGFSCYVPPFNPKDIKENIKRTLEGEDLIEMKPWF 839
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
+ FKG + Y D+ + I +L++TEL G+WT DYK+ LDTL+
Sbjct: 840 RGFKGRV-YKDDAGLWITEGIYRDTGSRLKVTELPPGRWTQDYKEYLDTLV 889
>gi|451927544|gb|AGF85422.1| topoisomerase 2 [Moumouvirus goulette]
Length = 1263
Score = 435 bits (1118), Expect = e-118, Method: Compositional matrix adjust.
Identities = 265/656 (40%), Positives = 353/656 (53%), Gaps = 133/656 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETN----HMERREITYVPGLYKIFDEI 91
YQKK+ EHIL PDTYIGS+E T MW+ N + + +EITYVPGLYKI+DE+
Sbjct: 17 YQKKNLHEHILHSPDTYIGSIEDKTCHMWIYNEKAKDGDAQIIYKEITYVPGLYKIYDEV 76
Query: 92 LVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTS 151
LVNA D+ R N IK+ + Q+T I+VWNNG GI VVEHK K+
Sbjct: 77 LVNAADHNNRCDSCNIIKVNIEQDTGKITVWNNGDGIDVVEHKQHKI------------- 123
Query: 152 SNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSC 211
+VP+MIFG LLTS+NY+ E K GG+NG+G+KL NI+S++F VET
Sbjct: 124 ------------LVPSMIFGELLTSTNYDKNEKKTVGGKNGFGSKLANIYSTEFYVETVD 171
Query: 212 SEYKKSFKQVWKDNM-----SKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDL 266
+ K F Q + DNM +KVTS + K+ +TKITF PD KF + L D++ L
Sbjct: 172 VKRGKKFYQKFTDNMYNKEKAKVTSIKTKT----PYTKITFVPDFKKFGLKGLTDDILAL 227
Query: 267 ITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEV 326
+R YD A +T K+F N + +P NF Y+ LY +G K + + RW+V
Sbjct: 228 FKKRVYDLAMTT-TAKIFYNDKLIPQNNFNKYIDLYF----PEGTGHKKVIDISQNRWKV 282
Query: 327 AIA--PSDR-GFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLF 383
P+D+ Q +SFVNSI T++GG HVD VV+ +VK + E V KK K
Sbjct: 283 CAVYDPTDQLEHQNISFVNSICTSRGGTHVDQVVNQVVKNLKEAVAKKVK---------- 332
Query: 384 GNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENM 443
G+ +KP +K ++ FI+ +I NP FD+QTKE +
Sbjct: 333 --------------------------GLQVKPTMIKENLIFFIDSIIENPDFDTQTKEYL 366
Query: 444 TLQKGSFGSTCV-------------------------------------------PKLED 460
T + +FGS V KL +
Sbjct: 367 TKKPTNFGSNFVVTDDFIKKVIKTGVVSQIIANAQAKAEASLSKTDGKGKGPVRYEKLYN 426
Query: 461 ANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILE 520
A+ AGTK CTLILTEGDSAK+ A+SGL VVGRD YG+FPL+GK LNVR + +
Sbjct: 427 AHKAGTKEGYKCTLILTEGDSAKAFAMSGLNVVGRDYYGIFPLKGKPLNVRTKSPAIVAS 486
Query: 521 NAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPT 580
N EI + KI+GL+ K Y D+K LRYG +MI+ DQD DG HIKGLI+N IH WP+
Sbjct: 487 NEEITAIKKIVGLEQGKVYN---DLKELRYGSIMILADQDVDGYHIKGLIMNLIHRFWPS 543
Query: 581 LLRLP-FLEEFITPIIKATKA----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
L + F++ F TP++KA+K RE + F + FEEWK + + IKYYK
Sbjct: 544 LAKYEGFIQSFATPLLKASKGKGKNREVIEFTNPQSFEEWKLKNNGGKGWTIKYYK 599
Score = 120 bits (300), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 76/109 (69%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP +Y+P+IPM+LVNG +GIGTG+ T +P NPR I +NI R++ + P MKPWY+NF
Sbjct: 852 IEPVFYVPVIPMILVNGTDGIGTGYSTNVPPCNPRNIHENILRILNDQKPKTMKPWYRNF 911
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLH 768
G ++ +++++ + I+ +D + IT+L +G WT DYK LD L++
Sbjct: 912 TGTVEKIDNNKYISRAKYEIIGNDTIHITDLPIGTWTDDYKAFLDNLIN 960
>gi|378706339|gb|AFC35140.1| hypothetical protein OtV6_232c [Ostreococcus tauri virus RT-2011]
Length = 1071
Score = 435 bits (1118), Expect = e-118, Method: Compositional matrix adjust.
Identities = 256/644 (39%), Positives = 340/644 (52%), Gaps = 126/644 (19%)
Query: 37 QKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNAC 96
QK + +EH+L RPD+Y+G V+ E+ WL+N + +++ I+Y P L KIFDEILVNA
Sbjct: 5 QKLTHVEHVLKRPDSYVGPVDKTHESYWLLNNTNKNFQKKNISYSPALLKIFDEILVNAI 64
Query: 97 DNKQRDPK-MNCIKITVNQETNTISVWNNG--KGIPVVEHKDEKMFVPTMIFGHLLTSSN 153
D PK + I ++V++ET +++ NNG GI V ++ E ++ P + FG
Sbjct: 65 DRNSLHPKNVTQISVSVDKETGAVTIENNGPLGGISVKMNEKEGVWNPELTFG------- 117
Query: 154 YNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSE 213
HLLTS+NY+D + ++ GGRNGYGAKL NI+SS+F + E
Sbjct: 118 ------------------HLLTSTNYDDSQKRIVGGRNGYGAKLTNIYSSQFSIIIKDGE 159
Query: 214 YKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAY 272
KK++ Q W DNM+ P++ K + ITFTPD +F M LD ++ + +R +
Sbjct: 160 EKKTYTQKWSDNMTTCHPPKLTKHSATTSSVSITFTPDWKRFGMKELDINIYKIFEKRVW 219
Query: 273 DA-AASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPS 331
DA +T + KV GE LP +F+ Y K++ D + RW V + PS
Sbjct: 220 DANICTTPNCKVKFQGEALPKTSFEAYAKMHEGVTD--------VCSVTTDRWSVCVGPS 271
Query: 332 DRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVK 391
+ G +QVSFVN I T KGG HVD V + II+ + KK K
Sbjct: 272 ENGLEQVSFVNGICTNKGGTHVDYVASYLASGIIDEMAKKIK------------------ 313
Query: 392 NNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFG 451
LKP QVKN IF+ + NPTF SQ K T + FG
Sbjct: 314 ---------------------LKPQQVKNTFNIFVKATLENPTFSSQVKSECTSKVQDFG 352
Query: 452 S--------------------------------------------TCVPKLEDANDAGTK 467
S T +PKL+DAN AGT
Sbjct: 353 SKFEPPKNFVKNALKTGISDELTALSKFKEMKELKKTDGARKSKITGIPKLDDANKAGTA 412
Query: 468 NSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNL 527
S CTLI+TEGDSAK+LAV+GL VVGRD YGVFPLRGK NVR+A+ Q+ N E N+L
Sbjct: 413 QSSKCTLIVTEGDSAKTLAVAGLSVVGRDHYGVFPLRGKCKNVRDASVAQLTSNQEFNDL 472
Query: 528 VKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFL 587
KILGLQ K+Y +D+ LRYGRLMIMTD D DGSHIKGLI+N IH+ WP+LL+L F+
Sbjct: 473 KKILGLQQGKEY---KDVTELRYGRLMIMTDADNDGSHIKGLILNMIHYFWPSLLKLGFV 529
Query: 588 EEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+TPIIKATK + SFY+ F W ++IKYYK
Sbjct: 530 VSMVTPIIKATKGSQTKSFYTDSAFRTW--YGNGQQGWRIKYYK 571
Score = 107 bits (266), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 76/111 (68%), Gaps = 3/111 (2%)
Query: 658 GR-IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWY 716
GR IEP++Y+P +PMVLVNG EGIGTG+ +P NP++I +NI+RM+ G M PW+
Sbjct: 782 GRPIEPDFYMPTLPMVLVNGTEGIGTGFSCYVPPFNPKDIKENIQRMLSGMSLREMTPWF 841
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
+ FKG++ + D +V G I +L++TEL G+WT DYK+ LDTL+
Sbjct: 842 RGFKGKV-FKEDGSWVTEG-IWRDTGSRLKVTELPPGRWTQDYKEYLDTLV 890
>gi|183987574|gb|ACC65777.1| topoisomerase II [Lentinus tuber-regium]
Length = 692
Score = 435 bits (1118), Expect = e-118, Method: Compositional matrix adjust.
Identities = 229/497 (46%), Positives = 302/497 (60%), Gaps = 94/497 (18%)
Query: 190 RNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFT 248
RNGYGAKL NI+S +F +ET+ +K + Q W NM++V +I S+ +++T++TF
Sbjct: 1 RNGYGAKLANIYSLEFTIETADKINEKKYSQTWTKNMTQVGKAKITKNSRGEEYTRVTFK 60
Query: 249 PDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDE 308
PDL +F M+ +D D L+ +R YD A + KDVKV+LN E+L VK+F+ YV++Y D
Sbjct: 61 PDLARFGMSHIDTDTASLLRKRVYDLAGTVKDVKVYLNDERLKVKDFKQYVEMYLDAAAA 120
Query: 309 D-----GDPVK----IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDA 359
D G + +IYE ++ RWEVA A SD FQQVSF NSI+T KGG HV+ + D
Sbjct: 121 DAKENSGGAAQAKPTLIYEQISGRWEVAFATSDGTFQQVSFANSISTIKGGTHVNYIADQ 180
Query: 360 IVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVK 419
+ K +I + KKNK G +KP Q+K
Sbjct: 181 LSKNLIAAITKKNK------------------------------------GATVKPAQIK 204
Query: 420 NHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--------------------------- 452
NH+WIF+N LI NPT DSQTKE +TL FGS
Sbjct: 205 NHMWIFVNSLIENPTSDSQTKETLTLPASKFGSKPTLSEEFLKKVQKSSIIDQVLNWAKF 264
Query: 453 -----------------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGR 495
T + KL DAN+AGTK + CTLILTEGDSAKSLAV+GL VVGR
Sbjct: 265 KADQQIKKTDGSKRNRLTGMAKLSDANNAGTKQAEKCTLILTEGDSAKSLAVAGLAVVGR 324
Query: 496 DKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMI 555
D +GVFPLRGKLLNVREA H QI++N EI N+ KI+GLQ++K+YT V +LRYGRLMI
Sbjct: 325 DNFGVFPLRGKLLNVREAKHDQIMKNEEIQNIKKIMGLQHNKEYTNVS---SLRYGRLMI 381
Query: 556 MTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEE 614
MTDQD DGSHIKGL+INF+ H +P+LL++P FL EF+TPI++ TK + +F+++PE+E+
Sbjct: 382 MTDQDHDGSHIKGLLINFLDHFYPSLLKIPEFLVEFVTPIVRVTKGNQRKNFFTIPEYEK 441
Query: 615 WKEETTNWHTYKIKYYK 631
W EET + + KYYK
Sbjct: 442 WLEETPDSKKWTAKYYK 458
Score = 58.5 bits (140), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/25 (80%), Positives = 25/25 (100%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGW 684
+EPEWY+P++P+VLVNGAEGIGTGW
Sbjct: 668 VEPEWYMPVVPLVLVNGAEGIGTGW 692
>gi|157953085|ref|YP_001497977.1| hypothetical protein NY2A_B781L [Paramecium bursaria Chlorella
virus NY2A]
gi|155123312|gb|ABT15180.1| hypothetical protein NY2A_B781L [Paramecium bursaria Chlorella
virus NY2A]
Length = 1061
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/640 (39%), Positives = 353/640 (55%), Gaps = 123/640 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQ +H+L RPDTYIGS P T+ W+ + ++++TY L KIFDEI+ N+
Sbjct: 5 YQKLSQRDHVLARPDTYIGSTAPQTKNEWVY--VNGKVIKKDVTYSSALLKIFDEIITNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D RD ++ +KI +++ ++SV+N+G IP+ +H EK ++P +IF
Sbjct: 63 ADCYNRDKRLTILKICIDE--TSVSVFNDGCSIPIEKHDVEKCYIPELIF---------- 110
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLL N++D E + GRNG G+K NIFS F VE C K
Sbjct: 111 ---------------GHLLAGENFDDTEQRTGAGRNGIGSKATNIFSKIFDVEI-CDGNK 154
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K +KQ W+DNMS V+ P++ + SK+ + TF PD +F + + D D++ ++ RR YD A
Sbjct: 155 K-YKQTWRDNMSVVSKPKVTTCSKNPYITTTFFPDFERFGVDTFDDDILSVMRRRVYDMA 213
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A VKV LNG++L +KN +DY LY + E K +E+ W+V +A + F
Sbjct: 214 AVLGKVKVMLNGKRLEIKNTEDYFSLYIGSKSE----TKRAFEHTPEEWDVGVACVE-DF 268
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
VSFVNS+ T +GG HV+AV D +VK +IE KK
Sbjct: 269 TPVSFVNSVVT-RGGTHVNAVSDVVVKAVIEAAAKKK----------------------- 304
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT----------- 444
+ +KP VKN +++F+N IVNPTFDSQTKE +T
Sbjct: 305 ---------------IIVKPSTVKNRMFVFVNATIVNPTFDSQTKEILTSRNARVTLSEA 349
Query: 445 LQKGSFGS--------------------------------TCVPKLEDANDAGTKNSIDC 472
K + G T +PKL DA AGT NS C
Sbjct: 350 FLKKAVGVLLDVVIQETNVRTSLVDQKELKKTDGTKKIRVTGIPKLNDATWAGTNNSKMC 409
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA++GL VVGR++YGVFPLRGKLLNVR+A+ I +N EI L +ILG
Sbjct: 410 TLILTEGDSAATLAIAGLSVVGRERYGVFPLRGKLLNVRDASVASITKNEEITALKQILG 469
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
LQ K Y +D +LRYG +MIMTD D DG+HI GL++NF H +P LL +P FL++FI
Sbjct: 470 LQTGKVY---KDTSSLRYGHVMIMTDADVDGTHISGLVMNFFHSCFPNLLEIPGFLKKFI 526
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A K +E F+SLP+FE++ +T + + KY+K
Sbjct: 527 TPIVVARKGKEVREFFSLPDFEDF-VKTQDMKKWTTKYFK 565
Score = 132 bits (331), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 81/109 (74%), Gaps = 1/109 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE+Y+P+IP +LVNG+ GIGTGW T IP++NP++IVDN+KR+I GED + MKPWYK
Sbjct: 773 KIEPEYYVPVIPSILVNGSSGIGTGWSTNIPSYNPKDIVDNVKRLISGEDLVEMKPWYKG 832
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
FKG+I +V G + + + + ++EL +GKWT DYK+ LD LL
Sbjct: 833 FKGKIMETSPGVYVTKG-LYMPNGKTIVVSELPIGKWTQDYKEHLDGLL 880
Score = 43.9 bits (102), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%)
Query: 849 DKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
D YDYLL M SLT+ER EL ++ EL+ L K TD+W DL +L
Sbjct: 1009 DDKYDYLLNMRISSLTLERAEELKRESVKLEKELDDLSKTTETDMWMHDLQSL 1061
>gi|448934962|gb|AGE58514.1| DNA topoisomerase II [Paramecium bursaria Chlorella virus NY-2B]
Length = 1062
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 256/640 (40%), Positives = 353/640 (55%), Gaps = 123/640 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQ +H+L RPDTYIGS P T+ W+ + ++++TY L KIFDEI+ N+
Sbjct: 5 YQKLSQRDHVLARPDTYIGSTAPQTKNEWVY--VDGKIIKKDVTYSSALLKIFDEIITNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D RD KM +K+ +++++ +SV N+G IP+ +H EK ++P +IF
Sbjct: 63 ADCYNRDKKMTMLKVCIDEKS--VSVHNDGCNIPIEKHDVEKCYIPELIF---------- 110
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLL N++D E + GRNG G+K NIFS F VE C K
Sbjct: 111 ---------------GHLLAGENFDDTEQRTGAGRNGIGSKATNIFSKIFDVEI-CDGNK 154
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K +KQ W+DNMS V+ P++ + SK+ + TF PD +F + + D D++ ++ RR YD A
Sbjct: 155 K-YKQTWRDNMSVVSKPKVTTCSKNPYITTTFFPDFERFGVDTFDDDILSVMRRRVYDMA 213
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A VKV LNG++L +KN +DY LY + E K +E+ W+V +A + F
Sbjct: 214 AVLGKVKVMLNGKRLEIKNTEDYFSLYIGSKSE----TKRAFEHTPEEWDVGVACVE-DF 268
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
VSFVNS+ T +GG HV+AV D +VK +IE KK
Sbjct: 269 TPVSFVNSVVT-RGGTHVNAVSDVVVKAVIEAAAKKK----------------------- 304
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT----------- 444
+ +KP VKN +++F+N IVNPTFDSQTKE +T
Sbjct: 305 ---------------IIVKPSTVKNRMFVFVNATIVNPTFDSQTKEILTSRNARVTLNEA 349
Query: 445 LQKGSFGS--------------------------------TCVPKLEDANDAGTKNSIDC 472
K + G T +PKL DA AGT NS C
Sbjct: 350 FLKKAVGVLLDVVIQETNVRTSLVDQKELKKTDGTKKIRVTGIPKLNDATWAGTNNSKMC 409
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA++GL VVGR++YGVFPLRGKLLNVR+A+ I +N EI L +ILG
Sbjct: 410 TLILTEGDSAATLAIAGLSVVGRERYGVFPLRGKLLNVRDASVASITKNEEITALKQILG 469
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
LQ K Y +D +LRYG +MIMTD D DG+HI GL++NF H +P LL +P FL++FI
Sbjct: 470 LQTGKVY---KDTSSLRYGHVMIMTDADVDGTHISGLVMNFFHSCFPNLLEIPGFLKKFI 526
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A K +E F+SLP+FE++ +T + + KY+K
Sbjct: 527 TPIVVARKGKEVREFFSLPDFEDF-VKTQDMKKWTTKYFK 565
Score = 131 bits (329), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 82/109 (75%), Gaps = 1/109 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE+Y+P+IP +LVNG+ GIGTGW T IP++NP++IVDN+KR+I GED + MKPW++
Sbjct: 773 KIEPEYYVPVIPSILVNGSSGIGTGWSTNIPSYNPKDIVDNVKRLIAGEDLVEMKPWFRG 832
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
FKG+I+ +V G + + + + ++EL +GKWT DYK+ LD LL
Sbjct: 833 FKGKIEETSPGVYVTKG-LYMPNGKTIMVSELPIGKWTQDYKEHLDGLL 880
Score = 43.1 bits (100), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 849 DKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
D YDYLL M SLT+ER EL ++ EL+ L K TD+W+ DL ++
Sbjct: 1009 DDKYDYLLNMRISSLTLERAEELKRESVKLEKELDDLSKTTETDMWNHDLQSV 1061
>gi|314055306|ref|YP_004063644.1| DNA topoisomerase II [Ostreococcus tauri virus 2]
gi|313575197|emb|CBI70210.1| DNA topoisomerase II [Ostreococcus tauri virus 2]
gi|388548581|gb|AFK65783.1| topoisomerase II [Ostreococcus lucimarinus virus OlV6]
Length = 1072
Score = 432 bits (1111), Expect = e-117, Method: Compositional matrix adjust.
Identities = 255/644 (39%), Positives = 338/644 (52%), Gaps = 126/644 (19%)
Query: 37 QKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNAC 96
QK + +EH+L RPD+Y+G V+ +E+ W+ ++ N +++ + Y P L KIFDEILVNA
Sbjct: 6 QKLTHIEHVLKRPDSYVGPVDIGSESYWIFHKTDNQFKKKNVNYSPALLKIFDEILVNAI 65
Query: 97 DNKQRDPK-MNCIKITVNQETNTISVWNNG--KGIPVVEHKDEKMFVPTMIFGHLLTSSN 153
D PK + I +++ET +I++ NNG GI V H+ E ++ P + FGHLLTS+N
Sbjct: 66 DRNSVHPKSVTSISAGIDKETGSITIENNGPLGGIGVRMHEKEGIWNPELTFGHLLTSTN 125
Query: 154 YNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSE 213
Y+D + ++ GGRNGYGAKL NI+SS+F + E
Sbjct: 126 -------------------------YDDTKKRIVGGRNGYGAKLTNIYSSEFSIVIKDGE 160
Query: 214 YKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAY 272
K+ + Q W +NM+ P+I K + ITF PD +F M +D + + +R +
Sbjct: 161 TKQCYTQKWNNNMTVCHPPKITKHSASTSSVSITFIPDWKRFGMNKMDASIYKIFEKRVW 220
Query: 273 DA-AASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPS 331
DA +T + KV GE LP +F+ Y K++ D + RW V I PS
Sbjct: 221 DANICTTPNCKVKFQGEALPKTSFEAYAKMHEGVTD--------VCSVTTDRWSVCIGPS 272
Query: 332 DRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVK 391
D G +QVSFVN I+TTKGG HVD V + II+ + KK K
Sbjct: 273 DNGLEQVSFVNGISTTKGGTHVDHVASYLAAGIIDEMAKKIK------------------ 314
Query: 392 NNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFG 451
LKP QVKN IF+ + NPTF SQ K T + FG
Sbjct: 315 ---------------------LKPQQVKNTFNIFVKATLENPTFSSQVKSECTSKTQDFG 353
Query: 452 S--------------------------------------------TCVPKLEDANDAGTK 467
S T +PKL+DAN AGT
Sbjct: 354 SKFEPPKNFVKNALKTGIQDELTALSKFKEMRELKKTDGARKSKITGIPKLDDANKAGTA 413
Query: 468 NSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNL 527
S CTLI+TEGDSAK+LAV+GL VVGRD YGVFPLRGK NVR+A+ Q+ N E N+L
Sbjct: 414 QSGKCTLIVTEGDSAKTLAVAGLSVVGRDHYGVFPLRGKCKNVRDASVAQLTSNQEFNDL 473
Query: 528 VKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFL 587
KILGLQ K Y +D+ LRYGRLMIMTD D DGSHIKGLI+N IH+ WP+LL+L F+
Sbjct: 474 KKILGLQQGKDY---QDVSELRYGRLMIMTDADNDGSHIKGLILNMIHYFWPSLLKLGFV 530
Query: 588 EEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+TPIIKA+K + SFY+ F W + +KIKYYK
Sbjct: 531 VSMVTPIIKASKGGQSKSFYTDSAFRTW--YGSGQAGWKIKYYK 572
Score = 103 bits (257), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 74/111 (66%), Gaps = 3/111 (2%)
Query: 658 GR-IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWY 716
GR IEP++Y+P IPMVLVNG EGIGTG+ +P NP++I +NI+R + G M PW+
Sbjct: 783 GRSIEPDFYMPTIPMVLVNGTEGIGTGFSCYVPPFNPKDIKENIQRALEGHSFKDMSPWF 842
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
+ FKG+I + D ++ G + +L++TEL G+WT DYK+ LD L+
Sbjct: 843 RGFKGKI-FKEDGTWITEG-VWRDTGSRLKVTELPPGRWTQDYKEYLDILI 891
>gi|448930452|gb|AGE54017.1| DNA topoisomerase II [Paramecium bursaria Chlorella virus IL-3A]
Length = 570
Score = 432 bits (1111), Expect = e-117, Method: Compositional matrix adjust.
Identities = 256/603 (42%), Positives = 363/603 (60%), Gaps = 46/603 (7%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +Q EH+L RPDTYIGSV P T+ W+ + R+++TY P L KIFDEI+ N+
Sbjct: 4 YQKLTQREHVLARPDTYIGSVAPQTKNEWVY--VDGKIIRKDVTYPPALLKIFDEIITNS 61
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D RD K+ +K+ +++++ +SV N+G IP+ +H EK ++P +IF
Sbjct: 62 ADCYNRDKKLTVLKVCIDEKS--VSVHNDGCNIPIEKHDAEKCYIPELIF---------- 109
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLL N++D E + GRNG G+K NIFS KF VE + K
Sbjct: 110 ---------------GHLLAGENFDDSEQRTGAGRNGIGSKATNIFSKKFDVEIC--DGK 152
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K +KQ W++NMS ++ P++ + SKD + TF PD +F + S D D + ++ RR YD A
Sbjct: 153 KKYKQSWENNMSVMSKPKVTTCSKDSYITTTFFPDFERFGIESFDDDTMSIMVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A VKV LNG++L +KN +DY LY + E K +E+ W+VA++ SD F
Sbjct: 213 AVLNKVKVMLNGKRLEIKNTEDYFSLYVGNKTE----TKRAFEHTPENWDVAVSCSDE-F 267
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLG-CTIIMLFGNKFNNVKNNK 394
VSFVNS+ T +GG HV+AV DA+ K ++E KK + T+ N V N
Sbjct: 268 TPVSFVNSVVT-RGGTHVNAVTDAVAKAVVEAAAKKKIVVKPATVKGRMFVFVNAVVVNP 326
Query: 395 LQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK--GSFGS 452
++T ++ R + L VK I + ++ +I + + L+K G+ S
Sbjct: 327 NFDSQTKENLTSRNARVTLSDTFVKKAIGVLLDAVIQETNVRTSLVDQKELKKTDGAKKS 386
Query: 453 --TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNV 510
+ +PKL DA AGTKNS CTLILTEGDSA +LA++GL VVGR++YGVFPLRGKLLNV
Sbjct: 387 RVSGIPKLNDAAWAGTKNSKMCTLILTEGDSAATLAIAGLSVVGRERYGVFPLRGKLLNV 446
Query: 511 REATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLI 570
R+A+ I +N EI L +ILGLQ K Y +D +LRYG +MIMTD D DG+HI GL+
Sbjct: 447 RDASVASITKNEEITALKQILGLQTGKVY---KDTSSLRYGHVMIMTDADVDGTHISGLV 503
Query: 571 INFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKY 629
+NF H +P+LL +P FL++FITPI+ A K ++ FYSLP++E+W + T ++ Y+IKY
Sbjct: 504 MNFFHSCFPSLLEIPGFLKKFITPIVVAKKGKDVREFYSLPDYEDWVKTTKDYSKYQIKY 563
Query: 630 YKV 632
YKV
Sbjct: 564 YKV 566
>gi|157953897|ref|YP_001498788.1| hypothetical protein AR158_C707L [Paramecium bursaria Chlorella
virus AR158]
gi|156068545|gb|ABU44252.1| hypothetical protein AR158_C707L [Paramecium bursaria Chlorella
virus AR158]
Length = 1062
Score = 431 bits (1109), Expect = e-117, Method: Compositional matrix adjust.
Identities = 255/640 (39%), Positives = 353/640 (55%), Gaps = 123/640 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQ +H+L RPDTYIGS P T+ W+ + ++++TY L KIFDEI+ N+
Sbjct: 5 YQKLSQRDHVLARPDTYIGSTAPQTKNEWVY--VDGKVIKKDVTYSSALLKIFDEIITNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D RD ++ +KI +++ ++SV+N+G IP+ +H EK ++P +IF
Sbjct: 63 ADCYNRDKRLTILKICIDE--TSVSVFNDGCLIPIEKHDVEKCYIPELIF---------- 110
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLL N++D E + GRNG G+K NIFS F VE C K
Sbjct: 111 ---------------GHLLAGENFDDTEQRTGAGRNGIGSKATNIFSKIFDVEI-CDGNK 154
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K +KQ W+DNMS V+ P++ + SK+ + TF PD +F + + D D++ ++ RR YD A
Sbjct: 155 K-YKQTWRDNMSVVSKPKVTTCSKNPYITTTFFPDFERFGVDTFDDDILSVMRRRVYDMA 213
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A VKV LNG++L +KN +DY LY + E K +E+ W+V +A + F
Sbjct: 214 AVLGKVKVMLNGKRLEIKNTEDYFSLYIGSKSE----TKRAFEHTPEEWDVGVACVE-DF 268
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
VSFVNS+ T +GG HV+AV D +VK +IE KK
Sbjct: 269 TPVSFVNSVVT-RGGTHVNAVSDVVVKAVIEAAAKKK----------------------- 304
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT----------- 444
+ +KP VKN +++F+N IVNPTFDSQTKE +T
Sbjct: 305 ---------------IIVKPSTVKNRMFVFVNATIVNPTFDSQTKEILTSRNARVTLSEA 349
Query: 445 LQKGSFGS--------------------------------TCVPKLEDANDAGTKNSIDC 472
K + G T +PKL DA AGT NS C
Sbjct: 350 FLKKAVGVLLDVVIQETNVRTSLVDQKELKKTDGTKKIRVTGIPKLNDATWAGTNNSKMC 409
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA++GL VVGR++YGVFPLRGKLLNVR+A+ I +N EI L +ILG
Sbjct: 410 TLILTEGDSAATLAIAGLSVVGRERYGVFPLRGKLLNVRDASVASITKNEEITALKQILG 469
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
LQ K Y +D +LRYG +MIMTD D DG+HI GL++NF H +P LL +P FL++FI
Sbjct: 470 LQTGKVY---KDTSSLRYGHVMIMTDADVDGTHISGLVMNFFHSCFPNLLEIPGFLKKFI 526
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A K +E F+SLP+FE++ +T + + KY+K
Sbjct: 527 TPIVVARKGKEVREFFSLPDFEDF-VKTQDMKKWTTKYFK 565
Score = 132 bits (332), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 82/109 (75%), Gaps = 1/109 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE+Y+P+IP +LVNG+ GIGTGW T IP++NP++IVDN+KR+I GED + MKPWY+
Sbjct: 773 KIEPEYYVPVIPSILVNGSSGIGTGWSTNIPSYNPKDIVDNVKRLIAGEDLVEMKPWYRG 832
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
FKG+I+ +V G + + + + ++EL +GKWT DYK+ LD LL
Sbjct: 833 FKGKIEETSPDVYVTKG-LYMPNGKTIVVSELPIGKWTQDYKEHLDGLL 880
Score = 43.1 bits (100), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 849 DKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
D YDYLL M SLT+ER EL ++ EL+ L K TD+W+ DL ++
Sbjct: 1009 DDKYDYLLNMRISSLTLERAEELKRESVKLEKELDDLSKTTETDMWNHDLQSV 1061
>gi|183987588|gb|ACC65784.1| topoisomerase II [Pleurotus cystidiosus]
Length = 692
Score = 431 bits (1108), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/497 (45%), Positives = 299/497 (60%), Gaps = 94/497 (18%)
Query: 190 RNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFT 248
R+G+GAKL NI+S +F++ET+ +K + Q W NMS+V +I S+ +++T++TF
Sbjct: 1 RHGFGAKLANIYSLEFMIETADKTSEKKYSQTWTKNMSQVGKAKITKNSRGEEYTRVTFK 60
Query: 249 PDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDE 308
PDL +F M +D D L+ +R YD A + KDVKV+LN E+L +KNF+ YV++Y D
Sbjct: 61 PDLARFGMQYIDADTASLLRKRVYDMAGTVKDVKVYLNDERLKIKNFKQYVEMYLDAAAA 120
Query: 309 D-----GDPVK----IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDA 359
D G + +IYE ++PRWEVA A SD Q VSF NSI+T KGG HV + D
Sbjct: 121 DAKENSGGAAQAKPTVIYEQISPRWEVAFATSDGTPQHVSFANSISTIKGGTHVTYIADQ 180
Query: 360 IVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVK 419
I K +I + KKNK G +KP Q++
Sbjct: 181 IAKNLIAAITKKNK------------------------------------GATVKPAQIR 204
Query: 420 NHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--------------------------- 452
NH+WIF+N LI NPTFDSQTKE +TL FGS
Sbjct: 205 NHMWIFVNSLIENPTFDSQTKETLTLPASKFGSKPSLSEEFMKKVQKSSIIEQVLNWAKF 264
Query: 453 -----------------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGR 495
T + KL DAN+AGTK++ CTLILTEGDSAKSLAV+GL VVGR
Sbjct: 265 KADQQIKKTDGSKRNRLTGMAKLSDANNAGTKHAEKCTLILTEGDSAKSLAVAGLAVVGR 324
Query: 496 DKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMI 555
D +GVFPLRGK LNVREA H QI++N EI N+ KI+GLQ++K+Y + +LRYGRLMI
Sbjct: 325 DNFGVFPLRGKFLNVREAKHDQIMKNEEIQNIKKIMGLQHNKEYANIS---SLRYGRLMI 381
Query: 556 MTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEE 614
MTDQD DGSHIKGL+INF+ H +P+LL++P FL EF+TPI++ TK + +F+++PE+E
Sbjct: 382 MTDQDHDGSHIKGLLINFLDHFYPSLLKVPEFLVEFVTPIVRVTKGNQRKNFFTIPEYET 441
Query: 615 WKEETTNWHTYKIKYYK 631
W EET + + KYYK
Sbjct: 442 WLEETPDSKKWTAKYYK 458
Score = 61.2 bits (147), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/25 (92%), Positives = 25/25 (100%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGW 684
+EPEWY+PIIPMVLVNGAEGIGTGW
Sbjct: 668 VEPEWYLPIIPMVLVNGAEGIGTGW 692
>gi|224007305|ref|XP_002292612.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
gi|220971474|gb|EED89808.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
Length = 1179
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 266/683 (38%), Positives = 368/683 (53%), Gaps = 142/683 (20%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E Y +K+ LEHILLRP YIG E M+R+E++YVP L KIFDE
Sbjct: 2 TIEDTYSRKTPLEHILLRPSMYIGPTEHADPKSCSSTNSPWTMQRQELSYVPALLKIFDE 61
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DN+ R P +C + + IS+ NNGK IP+ H+ E M++P ++FG
Sbjct: 62 ILVNASDNRLRHPG-SCNHFPSSSDP-YISITNNGKSIPIQIHRKENMYIPELLFG---- 115
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET- 209
HLLT SN+ND++ ++TGGR+GYGAKL N+FS +FVVE
Sbjct: 116 ---------------------HLLTGSNFNDDQKRLTGGRHGYGAKLTNVFSKQFVVEIG 154
Query: 210 ---SCSEYKKSFKQVWKDNMSKVTSPEIKSGSKD--------DFTKITFTPDLTKF---- 254
S K++KQVW+DNMS E+ S K D+T+I+F PDL +
Sbjct: 155 DGHSSKGKIKTYKQVWEDNMSVCHEAEVVSRDKKDADGKGNLDYTRISFIPDLARLTGDR 214
Query: 255 KMTSLDKDMVDLITRRAYD-AAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDE-DGDP 312
K L ++ L+ RR D A S + V LNGE++ V F+DY LY RQ E P
Sbjct: 215 KTEMLPEEEYQLMKRRVVDIAGCSGGKLTVTLNGEEISVSGFEDYANLY--RQPESSATP 272
Query: 313 V-KIIYENVNPRWEVAIAPSD-RGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKK 370
+ ++Y +N RWEVA+ S+ + + +SFVN + T++GG HVDA+ I + I + +
Sbjct: 273 LPPMVYHKLNSRWEVAVGLSETKSLESISFVNGMNTSRGGTHVDALARQISQYIADHINN 332
Query: 371 KNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLI 430
K + +N+++ + I + VR+ V+ H+++ +NCLI
Sbjct: 333 K-----------MARQLDNLQSGQ------PISVSVRM---------VRRHLFLCVNCLI 366
Query: 431 VNPTFDSQTKENMTLQKGSFGS-------------------------------------- 452
NP+FDSQ KE +T +FGS
Sbjct: 367 ENPSFDSQMKECLTSNPDNFGSHFELSNSFLRKLVGPGIVEEVLRMAMGAQQVNMARLLK 426
Query: 453 -------TCVPKLEDAN-----DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGV 500
+PKLEDAN D GT+N CTLILTEGDSAK+LAV+GL VVGRD YGV
Sbjct: 427 EQTKRQVLSIPKLEDANLAGSTDIGTENP--CTLILTEGDSAKALAVAGLEVVGRDHYGV 484
Query: 501 FPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQD 560
FPLRGK +NVR T KQ+ NAE+ + ILGLQ+ K Y T ++ + LRYG +M+MTDQD
Sbjct: 485 FPLRGKFMNVRNVTVKQLATNAELKAMCAILGLQFEKSYDTAKERQELRYGHVMLMTDQD 544
Query: 561 QDGSHIKGLIINFIHHNWPTLLR---LPFLEEFITPII---KATKAREELSFYSLPEFEE 614
DGSHIKGLI+N WP LL+ PF+ FITP++ K K ++ +SF+S+ E+
Sbjct: 545 ADGSHIKGLIMNMFRFFWPALLKPPSRPFMSMFITPLLKATKKGKKKDSISFFSVAEYNS 604
Query: 615 WKE------ETTNWHTYKIKYYK 631
W+E E + W +KYYK
Sbjct: 605 WRESLEDEDEISKW---TVKYYK 624
Score = 100 bits (250), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 71/115 (61%), Gaps = 5/115 (4%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE++ PIIP++LVNG +GIGTGW T IP HNP ++++ I+ + ++PW K F
Sbjct: 839 IEPEYFCPIIPLLLVNGCQGIGTGWSTFIPQHNPLDVLNYIRAKLDETKKPAIRPWVKGF 898
Query: 720 KGEIDYCGDSR---FVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAE 771
+G I DS+ +V G I + + I+EL VG WT DYK TL +L AE
Sbjct: 899 EGGITV--DSKRGDYVTEGIITPQKNSSVVISELPVGVWTNDYKATLVAMLKKAE 951
Score = 45.8 bits (107), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 11/103 (10%)
Query: 799 SEEEEIEEVFHDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGM 858
S++ E++ + +N +A Q R+++ DE S + + K+YDYLL +
Sbjct: 1083 SKQSELDAIKSNNNIA-----------QRRESSNVVMDEFMSDEESAKGAAKEYDYLLNL 1131
Query: 859 TFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
SLT+E+ + L T+L +K P DLW +DL+ L
Sbjct: 1132 PLSSLTLEKIDALNDDAAKTDTKLEQIKNTTPADLWREDLNRL 1174
>gi|448924953|gb|AGE48534.1| DNA topoisomerase II [Paramecium bursaria Chlorella virus AN69C]
gi|448933895|gb|AGE57450.1| DNA topoisomerase II [Paramecium bursaria Chlorella virus NE-JV-4]
Length = 1064
Score = 429 bits (1103), Expect = e-116, Method: Compositional matrix adjust.
Identities = 256/608 (42%), Positives = 362/608 (59%), Gaps = 58/608 (9%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK +Q EH+L RPDTYIGSV P T+ W+ + R+++TY P L KIFDEI+ N+
Sbjct: 4 YQKLTQREHVLARPDTYIGSVAPQTKNEWVY--VDGKIIRKDVTYPPALLKIFDEIITNS 61
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D RD K+ +K+ +++++ +SV N+G IP+ +H EK ++P +IF
Sbjct: 62 ADCYNRDKKLTVLKVCIDEKS--VSVHNDGCNIPIEKHDAEKCYIPELIF---------- 109
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLL N++D E + GRNG G+K NIFS KF VE + K
Sbjct: 110 ---------------GHLLAGENFDDSEQRTGAGRNGIGSKATNIFSKKFDVE--ICDGK 152
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K +KQ W++NMS ++ P++ + SKD + TF PD +F + S D D + ++ RR YD A
Sbjct: 153 KKYKQSWENNMSVMSKPKVTTCSKDSYITTTFFPDFERFGIESFDDDTMSIMVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A VKV LNG++L +KN +DY LY + E K +E+ W+VA++ SD F
Sbjct: 213 AVLNKVKVMLNGKRLEIKNTEDYFSLYVGNKTE----TKRAFEHTPENWDVAVSCSDE-F 267
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIE-------VVKKKNKDLGCTIIMLFGNKFN 388
VSFVNS+ T +GG HV+AV DA+ K ++E VVK T+ N
Sbjct: 268 TPVSFVNSVVT-RGGTHVNAVTDAVAKAVVEAAAKKKIVVKP------ATVKGRMFVFVN 320
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK- 447
V N ++T ++ R + L VK I + ++ +I + + L+K
Sbjct: 321 AVVVNPNFDSQTKENLTSRNARVTLSDTFVKKAIGVLLDAVIQETNVRTSLVDQKELKKT 380
Query: 448 -GSFGS--TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLR 504
G+ S + +PKL DA AGTKNS CTLILTEGDSA +LA++GL VVGR++YGVFPLR
Sbjct: 381 DGAKKSRVSGIPKLNDAAWAGTKNSKMCTLILTEGDSAATLAIAGLSVVGRERYGVFPLR 440
Query: 505 GKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGS 564
GKLLNVR+A+ I +N EI L +ILGLQ K Y +D +LRYG +MIMTD D DG+
Sbjct: 441 GKLLNVRDASVASITKNEEITALKQILGLQTGKVY---KDTSSLRYGHVMIMTDADVDGT 497
Query: 565 HIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWH 623
HI GL++NF H +P+LL +P FL++FITPI+ A K ++ FYSLP++E+W + T ++
Sbjct: 498 HISGLVMNFFHSCFPSLLEIPGFLKKFITPIVVAKKGKDVREFYSLPDYEDWVKTTKDYS 557
Query: 624 TYKIKYYK 631
Y+IKYYK
Sbjct: 558 KYQIKYYK 565
Score = 132 bits (332), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 81/109 (74%), Gaps = 1/109 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE+Y+PIIP +LVNG+ GIGTGW T IP++NP++IVDN+KR+I GED + MKPWY+
Sbjct: 773 KIEPEYYVPIIPSILVNGSSGIGTGWSTNIPSYNPKDIVDNVKRLISGEDLVEMKPWYRG 832
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
FKG+I+ +V G + + + ++EL VGKWT DYK+ LD LL
Sbjct: 833 FKGKIEETFPGVYVTKG-LYMPKGKTIVVSELPVGKWTQDYKEYLDGLL 880
Score = 43.5 bits (101), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%)
Query: 849 DKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
D YDYLL M SLT+ER EL ++ EL+ L K TD+W DL +L
Sbjct: 1009 DGKYDYLLNMRISSLTLERATELEREAVKLNKELDDLSKTTETDMWKQDLTSL 1061
>gi|163955216|ref|YP_001648320.1| hypothetical protein OsV5_244r [Ostreococcus virus OsV5]
gi|163638665|gb|ABY28024.1| hypothetical protein OsV5_244r [Ostreococcus virus OsV5]
Length = 1072
Score = 428 bits (1101), Expect = e-116, Method: Compositional matrix adjust.
Identities = 255/645 (39%), Positives = 337/645 (52%), Gaps = 128/645 (19%)
Query: 37 QKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNAC 96
QK + +EH+L RPD+Y+G VE E W+ + N +++ + Y P L KIFDEILVNA
Sbjct: 6 QKLTHIEHVLKRPDSYVGPVEIGCEPYWIFQKTDNQFKKKSLNYSPALLKIFDEILVNAI 65
Query: 97 DNKQRDPKMNCIKIT--VNQETNTISVWNNG--KGIPVVEHKDEKMFVPTMIFGHLLTSS 152
D PK +C I+ +++ET +++ NNG G+ V H+ E ++ P + FGHLLTS+
Sbjct: 66 DRNSLHPK-SCTLISAGIDKETGAVTIENNGPLGGVGVRMHEKEGIWNPELTFGHLLTST 124
Query: 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCS 212
N Y+D + ++ GGRNGYGAKL NI+SS+F +
Sbjct: 125 N-------------------------YDDNKKRIVGGRNGYGAKLTNIYSSEFSIVIKDG 159
Query: 213 EYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRA 271
E K+ + Q W +NM+ P+I K + ITF PD +F M +D ++ + +R
Sbjct: 160 ETKQCYTQKWNNNMTVCHPPKITKHSASTSSVSITFIPDWKRFGMNKMDNNIYKIFEKRV 219
Query: 272 YDA-AASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAP 330
+DA +T + KV GE LP +F+ Y K++ + V + RW V I P
Sbjct: 220 WDANICTTPNCKVKFQGEALPKTSFEAYAKMH--------EGVSEVSSVTTDRWSVCIGP 271
Query: 331 SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNV 390
S+ G +QVSFVN I TTKGG HVD V I II+ + KK K
Sbjct: 272 SENGLEQVSFVNGICTTKGGTHVDHVASYIASGIIDEMAKKIK----------------- 314
Query: 391 KNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSF 450
LKP QVKN IF+ + NPTF SQ K T + F
Sbjct: 315 ----------------------LKPQQVKNTFNIFVKATLENPTFSSQVKSECTSKAQDF 352
Query: 451 GS--------------------------------------------TCVPKLEDANDAGT 466
GS T +PKL+DAN AGT
Sbjct: 353 GSKFEPPKNFVKNALKTGIQEELTALSKFKEMKELKKTDGARKSKITGIPKLDDANKAGT 412
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
S CTLI+TEGDSAK+LAV+GL VVGRD YGVFPLRGK NVR+A+ Q+ N E N+
Sbjct: 413 AQSGKCTLIVTEGDSAKTLAVAGLSVVGRDHYGVFPLRGKCKNVRDASVAQLTSNQEFND 472
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPF 586
L KILGLQ K+Y +D+ LRYGRLMIMTD D DGSHIKGLI+N IH+ WP+LL+L F
Sbjct: 473 LKKILGLQQGKEY---QDVSELRYGRLMIMTDADNDGSHIKGLILNMIHYFWPSLLKLGF 529
Query: 587 LEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+ +TPIIKA+K + SFY+ F W +KIKYYK
Sbjct: 530 VVSMVTPIIKASKGTQSKSFYTDSAFRSW--YGNGQPGWKIKYYK 572
Score = 107 bits (268), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 658 GR-IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWY 716
GR IEP++Y+P +PMVLVNG EGIGTG+ +P NP++I +NI+R + G D MKPW+
Sbjct: 783 GRAIEPDFYMPTLPMVLVNGTEGIGTGFSCYVPPFNPKDIKENIQRSLEGHDFKEMKPWF 842
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
+ FKG++ + D ++ G + +L++TEL G+WT DYK+ LDTL+
Sbjct: 843 RGFKGKV-FKEDGTWITEG-VWRDTGSRLKVTELPPGRWTQDYKEYLDTLV 891
>gi|260666081|ref|YP_003213035.1| DNA topoisomerase II [Ostreococcus tauri virus 1]
gi|260161099|emb|CAY39800.1| DNA topoisomerase II [Ostreococcus tauri virus 1]
Length = 1072
Score = 428 bits (1101), Expect = e-116, Method: Compositional matrix adjust.
Identities = 255/645 (39%), Positives = 336/645 (52%), Gaps = 128/645 (19%)
Query: 37 QKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNAC 96
QK + +EH+L RPD+Y+G VE E W+ + N +++ + Y P L KIFDEILVNA
Sbjct: 6 QKLTHIEHVLKRPDSYVGPVEIGCEPYWIFQKTDNQFKKKSLNYSPALLKIFDEILVNAI 65
Query: 97 DNKQRDPKMNCIKIT--VNQETNTISVWNNG--KGIPVVEHKDEKMFVPTMIFGHLLTSS 152
D PK +C I+ +++ET +++ NNG G+ V H+ E ++ P + FGHLLTS+
Sbjct: 66 DRNSLHPK-SCTLISAGIDKETGAVTIENNGPLGGVGVRMHEKEGIWNPELTFGHLLTST 124
Query: 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCS 212
N Y+D + ++ GGRNGYGAKL NI+SS+F +
Sbjct: 125 N-------------------------YDDNKKRIVGGRNGYGAKLTNIYSSEFSIVIKDG 159
Query: 213 EYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRA 271
E K+ + Q W +NM+ P+I K + ITF PD +F M +D ++ + +R
Sbjct: 160 ETKQCYTQKWNNNMTVCHPPKITKHSASTSSVSITFIPDWKRFGMNKMDNNIYKIFEKRV 219
Query: 272 YDA-AASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAP 330
+DA +T + KV GE LP +F+ Y K++ + V + RW V I P
Sbjct: 220 WDANICTTPNCKVKFQGEALPKTSFEAYAKMH--------EGVSEVSSVTTDRWSVCIGP 271
Query: 331 SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNV 390
S+ G +QVSFVN I TTKGG HVD V I II+ + KK K
Sbjct: 272 SENGLEQVSFVNGICTTKGGTHVDHVASYIASGIIDEMAKKIK----------------- 314
Query: 391 KNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSF 450
LKP QVKN IF+ + NPTF SQ K T + F
Sbjct: 315 ----------------------LKPQQVKNTFNIFVKATLENPTFSSQVKSECTSKAQDF 352
Query: 451 GS--------------------------------------------TCVPKLEDANDAGT 466
GS T +PKL+DAN AGT
Sbjct: 353 GSKFEPPKNFVKNALKTGIQEELTALSKFKEMKELKKTDGARKSKITGIPKLDDANKAGT 412
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
S CTLI+TEGDSAK+LAV+GL VVGRD YGVFPLRGK NVR+A+ Q+ N E N+
Sbjct: 413 AQSGKCTLIVTEGDSAKTLAVAGLSVVGRDHYGVFPLRGKCKNVRDASVAQLTSNQEFND 472
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPF 586
L KILGLQ K Y +D+ LRYGRLMIMTD D DGSHIKGLI+N IH+ WP+LL+L F
Sbjct: 473 LKKILGLQQGKDY---QDVSELRYGRLMIMTDADNDGSHIKGLILNMIHYFWPSLLKLGF 529
Query: 587 LEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+ +TPIIKA+K + SFY+ F W +KIKYYK
Sbjct: 530 VVSMVTPIIKASKGTQSKSFYTDSAFRSW--YGNGQPGWKIKYYK 572
Score = 108 bits (269), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 658 GR-IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWY 716
GR IEP++Y+P +PMVLVNG EGIGTG+ +P NP++I +NI+R + G D MKPW+
Sbjct: 783 GRAIEPDFYMPTLPMVLVNGTEGIGTGFSCYVPPFNPKDIKENIQRSLEGHDFKEMKPWF 842
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
+ FKG++ + D ++ G + +L++TEL G+WT DYK+ LDTL+
Sbjct: 843 RGFKGKV-FKEDGTWITEG-VWRDTGSRLKVTELPPGRWTQDYKEYLDTLM 891
>gi|183987564|gb|ACC65772.1| topoisomerase II [Pleurotus abalonus]
Length = 692
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 225/497 (45%), Positives = 297/497 (59%), Gaps = 94/497 (18%)
Query: 190 RNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFT 248
R+GYGAKL NI+S +F++ET+ +K + Q W NMS+V +I S+ +++T++TF
Sbjct: 1 RHGYGAKLANIYSLEFMIETADKTSEKKYSQTWTKNMSQVGKAKITKNSRGEEYTRVTFK 60
Query: 249 PDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDE 308
PDL +F M +D D L+ +R YD A + KDVKV+LN E+L +KNF+ V++Y D
Sbjct: 61 PDLPRFGMQYIDADTASLLRKRVYDMAGTAKDVKVYLNDERLKIKNFKQCVEMYLDAAAA 120
Query: 309 D-----GDPVK----IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDA 359
D G + +IYE ++PRWEVA A SD Q VSF NSI+T KGG HV + D
Sbjct: 121 DAKENSGGAAQAKPTVIYEQISPRWEVAFATSDGTPQHVSFANSISTIKGGTHVTYIADQ 180
Query: 360 IVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVK 419
I K +I + KKNK G +KP Q++
Sbjct: 181 IAKNLIAAITKKNK------------------------------------GATVKPAQIR 204
Query: 420 NHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--------------------------- 452
NH+WIF+N LI NPTFDSQTKE +TL FGS
Sbjct: 205 NHMWIFVNSLIENPTFDSQTKETLTLPASKFGSKPSLSEEFMKKVQKSSIIEQVLNWAKF 264
Query: 453 -----------------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGR 495
T KL DAN+AGTK++ CTLILTEGDSAKSLAV+GL VVGR
Sbjct: 265 KADQQIKKTDGSKRNRLTGTAKLSDANNAGTKHAEKCTLILTEGDSAKSLAVAGLAVVGR 324
Query: 496 DKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMI 555
D +GVFPLRGKLLNVREA H QI++N EI N+ KI+GLQ++K+Y + +LRYGRLMI
Sbjct: 325 DNFGVFPLRGKLLNVREAKHDQIMKNEEIQNIKKIMGLQHNKEYANIP---SLRYGRLMI 381
Query: 556 MTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEE 614
MTDQD DGSHIKGL+INF+ H +P+LL++P FL EF+TPI++ TK + +F+++PE+E
Sbjct: 382 MTDQDHDGSHIKGLLINFLDHFFPSLLKIPEFLVEFVTPIVRVTKGNQHRNFFTIPEYER 441
Query: 615 WKEETTNWHTYKIKYYK 631
W E T + + KYYK
Sbjct: 442 WLEATPDSKKWTAKYYK 458
Score = 57.8 bits (138), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/25 (76%), Positives = 25/25 (100%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGW 684
+EPEWY+P++P+VL+NGAEGIGTGW
Sbjct: 668 VEPEWYMPVVPLVLINGAEGIGTGW 692
>gi|183987578|gb|ACC65779.1| topoisomerase II [Lyophyllum shimeji]
Length = 692
Score = 424 bits (1090), Expect = e-115, Method: Compositional matrix adjust.
Identities = 228/497 (45%), Positives = 304/497 (61%), Gaps = 94/497 (18%)
Query: 190 RNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFT 248
RNGYGAKL NI+S +F VET+ + +KQ W DNMS P+I K+G +++T++TF
Sbjct: 1 RNGYGAKLANIYSHEFTVETADKNTQLKYKQTWTDNMSVCGKPKITKNGKGEEWTRVTFK 60
Query: 249 PDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-----T 303
PDL +F M +D+D L+ +R YD A + KDVKVFLN E+L +KNF+ YV++Y
Sbjct: 61 PDLKRFGMDKIDEDTAGLLRKRVYDMAGTVKDVKVFLNDERLKIKNFKQYVEMYLQSAHA 120
Query: 304 DRQDEDGDPVK----IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDA 359
+ + G + +IYE ++ RWE+A A S+ FQ VSF NSI+TTKGG HV + D
Sbjct: 121 EAAETSGGAAQAKPTVIYEQISARWEIAFAVSEGTFQFVSFANSISTTKGGTHVTYISDQ 180
Query: 360 IVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVK 419
I K ++ + KKNK +KP Q+K
Sbjct: 181 IAKNLVAAIAKKNKA------------------------------------ATVKPAQIK 204
Query: 420 NHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTCV------------------------ 455
NH+WIF+N LI NPTFDSQTKE +TL FG+ V
Sbjct: 205 NHMWIFVNALIENPTFDSQTKETLTLPASKFGTKPVLSEEFLKKVQKSSIIDNILNWAKY 264
Query: 456 --------------------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGR 495
KL DAN+AGTK++ +CTLILTEGDSAK+LAV+GLGVVGR
Sbjct: 265 KADQQIKRTDGTKRSRLIGLTKLSDANNAGTKHAKNCTLILTEGDSAKALAVAGLGVVGR 324
Query: 496 DKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMI 555
D +GVFPLRGKL NVREA H+QI++N EI N+ KI+GLQ++K YT + +LRYGRLMI
Sbjct: 325 DNFGVFPLRGKLFNVREARHEQIMKNEEIQNIKKIMGLQHNKDYT---NTMSLRYGRLMI 381
Query: 556 MTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEE 614
MTDQD DGSHIKGLIINF+ H +P+LL+LP FL EF+TPI++ TK ++ F+++PE+E+
Sbjct: 382 MTDQDHDGSHIKGLIINFLDHFYPSLLKLPEFLVEFVTPIVRVTKGKQRHDFFTIPEYEQ 441
Query: 615 WKEETTNWHTYKIKYYK 631
W EET + ++ KY+K
Sbjct: 442 WLEETPSSDKWEAKYFK 458
Score = 58.5 bits (140), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/25 (84%), Positives = 24/25 (96%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGW 684
IEPEWY+PI+PM L+NGAEGIGTGW
Sbjct: 668 IEPEWYMPIVPMTLINGAEGIGTGW 692
>gi|297850918|ref|XP_002893340.1| hypothetical protein ARALYDRAFT_313269 [Arabidopsis lyrata subsp.
lyrata]
gi|297339182|gb|EFH69599.1| hypothetical protein ARALYDRAFT_313269 [Arabidopsis lyrata subsp.
lyrata]
Length = 951
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 258/625 (41%), Positives = 352/625 (56%), Gaps = 118/625 (18%)
Query: 35 IYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVN 94
+YQ+KS EHILLRPD YIGS++ T+ +W+ E M R TYVPGL KIF+EIL+N
Sbjct: 1 MYQEKSLHEHILLRPDAYIGSIKEHTQPLWVF--EKGEMVYRRTTYVPGLCKIFEEILMN 58
Query: 95 ACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
A DNK+ DP M+ I + ++ + NTISV NNG G+PV + +++ +++P ++FG
Sbjct: 59 AVDNKRTDPSMDSIIVKIDVDQNTISVRNNGNGVPVAQLEEKNVYIPELVFGC------- 111
Query: 155 NDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEY 214
LLTSS++ +D TGGR GYGAKL NIFS++F +ET+ + Y
Sbjct: 112 ------------------LLTSSHF---DDNTTGGRTGYGAKLTNIFSTRFTIETNLNRY 150
Query: 215 KKSFKQVWKDNMSKVTSPEIKSG-SKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYD 273
+ K V+ NM + ++P + + S D +T++TF PDL F ++ + KD V L+ +R +
Sbjct: 151 EHE-KIVFTRNMKEKSTPVVTTCESIDKWTEVTFEPDLEMFHISKIGKDTVALMEKRIVE 209
Query: 274 AAASTKD-VKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSD 332
AA + VKV +N L V +F DYV LY DP+ + VN +WE+ ++ S
Sbjct: 210 CAACLGETVKVTINDTLLEVNSFNDYVDLYLGANSSRNDPLPRMTVKVNDKWEICVSLSK 269
Query: 333 RGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKN 392
FQQ+SFVNSIATTKGG HVD V I+ I VKKK
Sbjct: 270 DKFQQISFVNSIATTKGGPHVDYVTTQIIDFITNSVKKK--------------------- 308
Query: 393 NKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS 452
+ AK D VK H+W+F+NC+I +P FD KE + + SFGS
Sbjct: 309 --MNYAKVETD-------------NVKKHMWVFVNCVIDHPVFD-WLKETLIFPESSFGS 352
Query: 453 TC----------------------------------VPKLEDANDAGTKNSIDCTLILTE 478
C + KL DAN AG ++S CTLILTE
Sbjct: 353 KCKLSKDILKKDENPGMVKQLLSWATSKHGKDLDLGIEKLVDANKAGGEDSKLCTLILTE 412
Query: 479 GDSAKSLAVSGLGVV---GRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQY 535
GDSAK+L ++GL + R+ YGVFPL+GKL+NVR A+ +I +N +I L ILGL+
Sbjct: 413 GDSAKTLVMTGLSFLSDESRELYGVFPLQGKLMNVRGASEDKINKNKKIQQLKTILGLEN 472
Query: 536 SKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL-RLP-FLEEFITP 593
K+Y LRYG +MIMTDQD DG HIKGLIIN H WP LL R P FL EF+TP
Sbjct: 473 GKEY------GNLRYGHVMIMTDQDHDGFHIKGLIINLFHVMWPELLERDPSFLCEFVTP 526
Query: 594 IIKATK--AREELSFYSLPEFEEWK 616
I+KAT ++E +F+S+PE ++WK
Sbjct: 527 IVKATHEDGKKE-TFFSMPELKKWK 550
Score = 90.9 bits (224), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 67/108 (62%), Gaps = 3/108 (2%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP+WYIPIIP VLVNG EGIGTGW T +P ++ ++++ NI R++ GE PM P Y+ F
Sbjct: 762 IEPKWYIPIIPTVLVNGCEGIGTGWSTFVPKYSTKDVIKNIMRLMSGEALEPMVPSYRGF 821
Query: 720 KGEIDYCGDSRFVVNGEIAI-LDDDKLEITELQVGKWTTDYKDTLDTL 766
KG I + F+ G + + + ITEL + K ++YK L L
Sbjct: 822 KGTITET-EGGFITKGVFEKNIQNSTIRITELPI-KHLSNYKKFLHVL 867
>gi|183987570|gb|ACC65775.1| topoisomerase II [Pleurotus citrinopileatus]
Length = 709
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 229/514 (44%), Positives = 302/514 (58%), Gaps = 111/514 (21%)
Query: 190 RNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDD-FTKITFT 248
RNGYGAKL NI+S +F +ET+ +K + Q W NM++V +I S+++ +T++TF
Sbjct: 1 RNGYGAKLANIYSLEFTIETADKVNEKKYSQTWTKNMTQVGKAKITKNSRNEEYTRVTFK 60
Query: 249 PDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR--- 305
P+LT+F MT +D D L+ +R YD A + KDVKV+LN E+L +K F+ YV++Y +
Sbjct: 61 PELTRFGMTHIDPDTAGLLRKRVYDMAGTVKDVKVYLNDERLKIKTFKQYVEMYIEAATA 120
Query: 306 --QDEDGDPVK----IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDA 359
++ G + +IY ++PRWEVA A SD FQQVSF NSI+T KGG HV+ + D
Sbjct: 121 GAKENSGGAAQAKPTVIYAQISPRWEVAFATSDGTFQQVSFANSISTIKGGTHVNYIADQ 180
Query: 360 IVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVK 419
+ K II + KKNK +KP QVK
Sbjct: 181 LSKSIIAHIAKKNK------------------------------------AATVKPAQVK 204
Query: 420 NHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--------------------------- 452
NH+WIF+N LI NPTF SQTKE +TL G FGS
Sbjct: 205 NHMWIFVNALIENPTFGSQTKETLTLPAGKFGSRPALSEEFMKKVQKSFIIDQVLNWAKF 264
Query: 453 -----------------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGR 495
T + KL DAN+AGTKN+ CTLI TEGDSAKSLAV+GL VVGR
Sbjct: 265 KADRQIKKTDGSKRNRLTGMAKLSDANNAGTKNAEKCTLIHTEGDSAKSLAVAGLAVVGR 324
Query: 496 DKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMI 555
D +GVFPLRGKLLNVREA H QI++N EI N+ KI+GLQ++K+YT V +LRYGRLMI
Sbjct: 325 DNFGVFPLRGKLLNVREARHDQIMKNEEIQNIKKIMGLQHNKEYTNVS---SLRYGRLMI 381
Query: 556 MTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIK-----------------A 597
MTDQD DGSHIKGL+INF+ H +P+LL++P FL EF+TPI++
Sbjct: 382 MTDQDHDGSHIKGLLINFLDHFYPSLLKVPEFLVEFVTPIVRVSGLLVSSLMSLYTFVTV 441
Query: 598 TKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TK + +F+++PE+E W EET + + KYYK
Sbjct: 442 TKGNQRKNFFTIPEYETWLEETPDSKKWTAKYYK 475
Score = 61.2 bits (147), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/25 (92%), Positives = 25/25 (100%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGW 684
+EPEWY+PIIPMVLVNGAEGIGTGW
Sbjct: 685 VEPEWYLPIIPMVLVNGAEGIGTGW 709
>gi|449017495|dbj|BAM80897.1| DNA topoisomerase II [Cyanidioschyzon merolae strain 10D]
Length = 1200
Score = 422 bits (1085), Expect = e-114, Method: Compositional matrix adjust.
Identities = 251/656 (38%), Positives = 358/656 (54%), Gaps = 87/656 (13%)
Query: 32 VEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMER---------REITYVP 82
+E YQ+ + EH+L RP+ Y+G VE I +W + + +E+ R++ Y P
Sbjct: 27 IEATYQRLTPREHVLKRPEVYLGPVERIERRLWSIPATSATVEQVIHEGRITLRQVHYSP 86
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN------TISVWNNGKGIPVVEHKDE 136
LYKIFDEILVNA DN +RDP + I I + E + T+ + N G+GIPV H E
Sbjct: 87 ALYKIFDEILVNAIDNARRDPHTDAIDIWLPLEDSASTSKRTLRIRNTGRGIPVAMHPRE 146
Query: 137 KMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKV--TGGRNGYG 194
++VP +IF GHLLT SN++D + V TGGR+GYG
Sbjct: 147 HLYVPELIF-------------------------GHLLTGSNFDDTDASVRLTGGRHGYG 181
Query: 195 AKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGS----KDDFTKITFTPD 250
AKL NI S +F VET + ++QVW++NMS ++PEI++ S + +T+I F PD
Sbjct: 182 AKLTNIMSKRFAVETIDEQRCLRYRQVWQNNMSTCSAPEIEAVSPAIAQHPYTEIEFEPD 241
Query: 251 LTKFKMTSL-DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDED 309
L +F + D+D + L+ RRA+DAA +V+V LNG L + F +YV+ R D
Sbjct: 242 LERFGLDRCGDRDTLMLMARRAFDAAGILPNVRVRLNGTPLALNGFAEYVQ----RHGTD 297
Query: 310 GDPVKIIYENVNPRWEV---AIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIE 366
+P I+ N + WE+ A+ +++ VSFVN IAT +GG HV + + + ++I +
Sbjct: 298 AEPSIILQPNAH--WEIGLRALTQAEQAAPMVSFVNGIATFQGGSHVQCIQELLCRRIAD 355
Query: 367 VVKKKNKDLGCTI--------IMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQV 418
+ + K L C + ++LF N N + Q + L L + F
Sbjct: 356 RIAARYKSLRCVLTPSLVRSQLLLFVNCLVNRPAFESQSKEMLTSRQRDLLATLPEQFPT 415
Query: 419 KNHI-----------------WIFINCLIVNPTFDSQTKENMTLQKGSFGSTCVPKLEDA 461
+N + + + S + + G+ +PKLEDA
Sbjct: 416 ENELNDALEQTKLMERILAAAEERLAAEVRGSRPVSALVASASRGTGALRRLAIPKLEDA 475
Query: 462 NDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILEN 521
N AG +S CTLILTEGDSAK+LA++GL VVGRD YGVFPLRGKLLNVR+ +Q+ +N
Sbjct: 476 NAAGGPDSSRCTLILTEGDSAKALAMAGLSVVGRDYYGVFPLRGKLLNVRDCHPRQLAQN 535
Query: 522 AEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTL 581
E+NNL ILGL++ + Y+T E K LRYG +M+MTDQD DGSHIKGLI+N WP+L
Sbjct: 536 EEVNNLRIILGLEFDRDYSTPESRKALRYGHVMLMTDQDHDGSHIKGLIMNLFDFFWPSL 595
Query: 582 LR-LPFLEEFITPIIKATKAREEL--SFYSLPEFEEWKEE---TTNWHTYKIKYYK 631
L FLE F+TPI+KA SF+++ F EW E+ + H + IKYYK
Sbjct: 596 LEGGDFLEAFMTPIVKAAAKHGGAVQSFFTITAFREWWEQLPASQRHHHWLIKYYK 651
Score = 114 bits (284), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 70/108 (64%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE+++PIIPM LVNG +G+GTGW T +P +P +I+ N++ +++G P P+KPWY+
Sbjct: 870 QIEPEYFVPIIPMALVNGIDGVGTGWSTTLPPFHPLDIIHNVRCLLQGRSPKPLKPWYRR 929
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
F+G+I + FV G + L + EL +G+WT YK L L
Sbjct: 930 FRGQIIAQSELVFVSRGCVERLSSTTFRVRELPIGRWTESYKAFLHEL 977
>gi|219121754|ref|XP_002181225.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407211|gb|EEC47148.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1165
Score = 422 bits (1085), Expect = e-114, Method: Compositional matrix adjust.
Identities = 256/697 (36%), Positives = 367/697 (52%), Gaps = 177/697 (25%)
Query: 32 VEKIYQKKSQLEHILLRPDTYIGSVE-------------PITETMWLMNRETNHMERREI 78
+E Y +K+ LEH+LLRP Y+GS E P T L+ + T+
Sbjct: 1 LEDQYSRKTPLEHVLLRPSMYVGSNEKAQPIACWVPDPIPTPPTEELLMKTTS------- 53
Query: 79 TYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNT------ISVWNNGKGIPVVE 132
+FDEILVNA DN QR P +C +I V + + I V N+GKGIPV
Sbjct: 54 --------VFDEILVNAADNLQRHPD-SCTRIDVIIDPGSDNRDPFIRVRNDGKGIPVQV 104
Query: 133 HKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNG 192
H+ E M+VP M+F GHLLT SN++D E ++TGGR+G
Sbjct: 105 HQKEGMYVPEMLF-------------------------GHLLTGSNFDDNEKRLTGGRHG 139
Query: 193 YGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKD--DFTKITFTPD 250
+GAKL NIFS F VET S + ++Q W NM+ +SPEI D D+T ++F PD
Sbjct: 140 FGAKLTNIFSKSFTVETLDSRKRLKYRQTWSSNMTNASSPEIVEVPADATDYTCVSFVPD 199
Query: 251 LTKF----KMTSLDKDMVDLITRRAYD-AAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR 305
+ + S+ K+ L+ RR D A S ++V LNG + + +F DY +LY +
Sbjct: 200 VARLTNDASALSISKEDYALMCRRVLDVAGCSAGRLRVTLNGVDVTMGSFPDYARLYRKQ 259
Query: 306 QDEDGDPVKIIYENVNPRWEVAIAPSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQI 364
D + + ++ +N RW V + S+ G F+ VSFVN +AT++GG HV++++ ++K+I
Sbjct: 260 -----DSLPVCFDAINSRWTVGVGLSETGSFEMVSFVNGMATSRGGTHVNSILQQVIKKI 314
Query: 365 IEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWI 424
E ++K + +L +QMA GV ++ H+++
Sbjct: 315 QEKIEKTDPEL-------------------VQMASQ----GV-----------IRRHLFV 340
Query: 425 FINCLIVNPTFDSQTKENMTLQKGSFGST------------------------------- 453
+ LI NPTFDSQ KE +T FGS+
Sbjct: 341 SVAALIENPTFDSQMKECLTSSPADFGSSFSLSESFIKSVLQSEEEGGPGIVEEIRRAAQ 400
Query: 454 ---------------------CVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGV 492
+PKLEDA+ AGTK+ +CTLILTEGDSAK+LAV+GL V
Sbjct: 401 SRQQATLLKVIGGKTSKRQLLSIPKLEDAHHAGTKSGSECTLILTEGDSAKALAVAGLEV 460
Query: 493 VGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGR 552
+GR +YGVFPLRGKLLNVREA Q+ +NAE+ L I+GL + K Y T+E+ + LRYG+
Sbjct: 461 IGRARYGVFPLRGKLLNVREAAVSQMAKNAEVTALCAIIGLDFDKTYETIEERRKLRYGK 520
Query: 553 LMIMTDQDQDGSHIKGLIINFIHHNWPTLLR-------------LPFLEEFITPIIKATK 599
+M+MTDQD DGSHIKGL++NF + WP LL+ PFL F+TP++KA+K
Sbjct: 521 VMLMTDQDTDGSHIKGLVMNFFRYFWPNLLKPPVDLQVNDEDETPPFLSSFVTPLLKASK 580
Query: 600 AREE---LSFYSLPEFEEWKE--ETTNWHTYKIKYYK 631
+ LSFYS+ E+++W+ E ++ + +KYYK
Sbjct: 581 KSSKTGTLSFYSMAEYKKWRGSIEAEDFKKWTVKYYK 617
Score = 82.4 bits (202), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 66/108 (61%), Gaps = 4/108 (3%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLP-MKPWYK 717
+IEPE+Y PIIP+++VNG +GIGTGW T IP H+ ++++ I + G + LP + P+ +
Sbjct: 830 QIEPEFYCPIIPLLVVNGCQGIGTGWSTFIPPHSANDVLEYILAKLDGAERLPKIHPFAR 889
Query: 718 NFKGEI--DYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTL 763
F+G I D G+ +V G + + D + I EL + WT YK L
Sbjct: 890 GFQGRIEPDPNGNG-YVSFGRSSCISDRTILIDELPLRCWTNKYKGIL 936
>gi|448927391|gb|AGE50965.1| DNA topoisomerase II [Paramecium bursaria Chlorella virus CVB-1]
Length = 1058
Score = 418 bits (1075), Expect = e-113, Method: Compositional matrix adjust.
Identities = 251/640 (39%), Positives = 355/640 (55%), Gaps = 128/640 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K SQ +HIL+RPDTY+GSVE ++ + + + ++++TY P KIFDEILVN+
Sbjct: 5 YIKLSQRDHILIRPDTYVGSVEKELRNEYIF--DGSKITKKDVTYSPAFLKIFDEILVNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D R M +K+T+++++ ISV+N+G IP+ E DE +++P MIF
Sbjct: 63 ADCFNRGGAMTTLKVTISKDS--ISVYNDGCSIPL-EKNDEGIYIPEMIF---------- 109
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLL+ N++D E++ GRNGYG+KL NIFS F +E +K
Sbjct: 110 ---------------GHLLSGENFDDTEERTGAGRNGYGSKLTNIFSKIFSIEIYDGSHK 154
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
+ Q W DNM V+ +I SK +F PDL +F M ++D D ++ RR YD A
Sbjct: 155 --YVQSWSDNMISVSKAKITKSSKAPSITTSFVPDLARFGMINIDDDTRSILVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A V+VFL+G++L VK DY KLYTD K+++E+ + W + +AP++ F
Sbjct: 213 AVLGSVRVFLDGKRLEVKTPLDYFKLYTDE--------KVVFESADG-WSIGVAPANE-F 262
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
VSFVN+ A +GG HVDAVV++I K ++E KK
Sbjct: 263 ACVSFVNASA-ARGGTHVDAVVNSIAKAVVEAASKK------------------------ 297
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--- 452
KT++ KP VKN +++F+N +VNPTF SQTK+ +T + F
Sbjct: 298 ---KTIV-----------KPAMVKNKLFVFVNAKVVNPTFSSQTKDILTSRNIKFSPSAA 343
Query: 453 ----------------------------------------TCVPKLEDANDAGTKNSIDC 472
T + KL DA AGTKNS C
Sbjct: 344 FLKKATGLVLDAVIAETNVRESLVDARLLKKTDGVKKTRLTGIKKLTDAAWAGTKNSGLC 403
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA +GL VVGR++YG+FPLRGKLLNVR+A+ I NAEI + +ILG
Sbjct: 404 TLILTEGDSAATLATAGLAVVGRERYGIFPLRGKLLNVRDASVSSIAANAEIVAIKQILG 463
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
LQ K Y +D +LRYG +M+MTD D DGSHI L++NF H +P+LL +P FL++F
Sbjct: 464 LQVGKTY---KDASSLRYGSVMLMTDADVDGSHISALVMNFFHAQFPSLLAVPGFLKKFS 520
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A++ ++ FYSLP++E WK+ T + + IKY+K
Sbjct: 521 TPIVVASRGKDIKEFYSLPDYESWKKNTADCAKWSIKYFK 560
Score = 131 bits (329), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 79/108 (73%), Gaps = 1/108 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+P IP +LVNGA GIGTG+ T IP++NP++I+DN+KR+I G++ +PM PWYK F
Sbjct: 769 IEPEWYVPAIPFLLVNGANGIGTGFSTDIPSYNPKDIIDNVKRLISGKEMVPMTPWYKGF 828
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
G ID + F G +A ++ + ++EL VG WT+DYKD L+ L+
Sbjct: 829 TGTIDQNDNGTFTCKG-VAKVNGKSVVVSELPVGTWTSDYKDFLEGLV 875
Score = 41.2 bits (95), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDL 898
Y YLL M+ SLT+ER +L + + EL IL+ + T +WSDDL
Sbjct: 1007 YKYLLDMSISSLTLERAEKLRIEAEKLKKELTILENTSKTQMWSDDL 1053
>gi|183987580|gb|ACC65780.1| topoisomerase II [Pleurotus eryngii var. eryngii]
Length = 680
Score = 414 bits (1065), Expect = e-112, Method: Compositional matrix adjust.
Identities = 220/485 (45%), Positives = 292/485 (60%), Gaps = 94/485 (19%)
Query: 202 SSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDD-FTKITFTPDLTKFKMTSLD 260
S +F +ET+ K + Q W NM++V +I + S+++ +T++TF P+LT+F MT +D
Sbjct: 1 SLEFTIETADKVNGKKYSQTWTKNMTQVGKAKITNNSRNEEYTRVTFKPELTRFGMTHID 60
Query: 261 KDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDR-----QDEDGDPVK- 314
D L+ +R YD A + KDVKV+LN E+L +K F+ YV++Y + ++ G +
Sbjct: 61 ADTAGLLRKRVYDMAGTVKDVKVYLNDERLKIKTFKQYVEMYIEAATAGAKENSGGAAQA 120
Query: 315 ---IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK 371
+IYE ++PRWEVA A SD FQQVSF NSI+T KGG HV+ + D + K II + KK
Sbjct: 121 KPTVIYEQISPRWEVAFATSDGTFQQVSFANSISTIKGGTHVNYIADQLSKSIIAHIAKK 180
Query: 372 NKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIV 431
NK +KP QVKNH+WIF+N LI
Sbjct: 181 NK------------------------------------AATVKPAQVKNHMWIFVNALIE 204
Query: 432 NPTFDSQTKENMTLQKGSFGS--------------------------------------- 452
NPTFDSQTKE +TL G FGS
Sbjct: 205 NPTFDSQTKETLTLPAGKFGSRPALSEEFMKKVQKSSIIDQVLNWAKFKADQQIKKTDGS 264
Query: 453 -----TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKL 507
T + KL DAN+AGTKN+ CTLILTEGDSAKS AV+GL VVGRD +GVFPLRGKL
Sbjct: 265 KRNRLTGMAKLSDANNAGTKNAGKCTLILTEGDSAKSPAVAGLAVVGRDNFGVFPLRGKL 324
Query: 508 LNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIK 567
LNVREA H QI+ N EI N+ KI+GLQ++K+YT+V +LRYGRLMIMTDQD DGSHIK
Sbjct: 325 LNVREARHDQIMRNEEIQNIKKIMGLQHNKEYTSVS---SLRYGRLMIMTDQDHDGSHIK 381
Query: 568 GLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYK 626
GL+INF+ H +P+LL++P FL EF+TP ++ TK + +F+++PE+E W EET + +
Sbjct: 382 GLLINFLDHFYPSLLKVPEFLVEFVTPYVRVTKGNQRKNFFTIPEYETWLEETPDSKKWT 441
Query: 627 IKYYK 631
KYYK
Sbjct: 442 AKYYK 446
Score = 61.2 bits (147), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/25 (92%), Positives = 25/25 (100%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGW 684
+EPEWY+PIIPMVLVNGAEGIGTGW
Sbjct: 656 VEPEWYLPIIPMVLVNGAEGIGTGW 680
>gi|355725610|gb|AES08611.1| topoisomerase II alpha 170kDa [Mustela putorius furo]
Length = 1237
Score = 412 bits (1058), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/353 (57%), Positives = 242/353 (68%), Gaps = 80/353 (22%)
Query: 324 WEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLF 383
WEV + S++GFQQ+SFVNSIAT+KGGRHVD + D IV ++++VVKKKNK
Sbjct: 1 WEVCLTMSEKGFQQISFVNSIATSKGGRHVDYIADQIVTKLVDVVKKKNK---------- 50
Query: 384 GNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENM 443
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENM
Sbjct: 51 -------------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENM 85
Query: 444 TLQKGSFGSTC---------------------------------------------VPKL 458
TLQ SFGSTC +PKL
Sbjct: 86 TLQVKSFGSTCLLSEKFIKAAIGCGIVESILNWVKFKAQIQLNKKCSAVKHNRIKGIPKL 145
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
+DANDAG +NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI
Sbjct: 146 DDANDAGGRNSNECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQI 205
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNW 578
+ENAEINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNW
Sbjct: 206 MENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNW 265
Query: 579 PTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P+LLR FLEEFITPI+K +K ++E++FYSLPEFEEWK T N +K+KYYK
Sbjct: 266 PSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYK 318
Score = 152 bits (384), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 539 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRLMDGEEPLPMLPSYKN 598
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V++GE+AIL+ +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 599 FKGTIEELAPNQYVISGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 653
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL K R++K EL LK+K+P+DLW +DL A E
Sbjct: 829 FNYLLDMPLWYLTKEKKDELCKLRNEKEQELETLKRKSPSDLWREDLAAFIE 880
>gi|448932168|gb|AGE55728.1| DNA topoisomerase II [Acanthocystis turfacea Chlorella virus
MN0810.1]
Length = 1056
Score = 408 bits (1049), Expect = e-110, Method: Compositional matrix adjust.
Identities = 239/640 (37%), Positives = 351/640 (54%), Gaps = 130/640 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K SQ +H+L RPDTY+GSV ++ + + ++ ++Y P KIFDEIL N+
Sbjct: 5 YVKLSQRDHVLTRPDTYVGSVAKEAREEYVYTGDA--IVKKSVSYSPAFLKIFDEILTNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D R M +K+++ + + ++++N+G IP+ +H DE +VP +IF
Sbjct: 63 ADCFNRGAPMTTLKVSI--DADHVTIFNDGCSIPIEKH-DEGCYVPELIF---------- 109
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLLT N++D +++ GRNGYG+KL NIFS KF VE +K
Sbjct: 110 ---------------GHLLTGENFDDTQERTGAGRNGYGSKLTNIFSKKFDVEIYDGAHK 154
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
+ Q W DNM+ + P++ SK TF PD +F M+S+D+D ++ RR YD A
Sbjct: 155 --YIQSWSDNMTNASKPKVTKSSKAGSITTTFYPDFERFGMSSIDEDTRSVLVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A VK+FL+G++L VK +DY ++YTD K ++E + W++ + PSD F
Sbjct: 213 AVLTKVKIFLDGKRLDVKGAKDYFEMYTD--------AKPVFETADG-WDIGVCPSDE-F 262
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
+ VSFVN+ ++T+GG HVD + +A+ K + E KK
Sbjct: 263 RSVSFVNA-SSTRGGTHVDLIANAVAKAVSEAALKKK----------------------- 298
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ--------- 446
+ +KP VKN +++F+N IVNP+F SQTK+ +T +
Sbjct: 299 ---------------VTVKPAVVKNKLFLFVNARIVNPSFSSQTKDILTSKNVKCSPSAA 343
Query: 447 -----------------------------KGSFGS-----TCVPKLEDANDAGTKNSIDC 472
K + G+ T + KL DA AGTK+S C
Sbjct: 344 FLKKAVSAVLDDVIAETNVRESLVEMKNLKKTDGAKKVRLTGIKKLTDAAWAGTKHSGMC 403
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA+S L ++GR++YGVFPLRGKLLNVR+A+ I NAEI + +ILG
Sbjct: 404 TLILTEGDSAATLAISSLAIIGRERYGVFPLRGKLLNVRDASVSSITNNAEIVAIKQILG 463
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
L+ TT +D +LRYG +M+MTD D DGSHI GL++NF H +P+LL +P FL++F
Sbjct: 464 LRNG---TTYKDASSLRYGSVMLMTDADVDGSHITGLVVNFFHAQFPSLLEIPGFLKKFT 520
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A + ++ FYSLP+FE+WK+ T+ + IKY K
Sbjct: 521 TPIVIAKRGKDMKEFYSLPDFEDWKK--TSGEKWSIKYLK 558
Score = 124 bits (312), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 137/291 (47%), Gaps = 48/291 (16%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE+Y+P++P + VNGA GIGTG+ T IP++NP++IVDN+KR+I E LPM PWY+
Sbjct: 766 KIEPEYYVPVVPWLAVNGANGIGTGFSTNIPSYNPKDIVDNVKRLINNETMLPMTPWYRG 825
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHG---AEKDEV 775
FKG I F +G + + ++EL +G WT +YK+ L++L+ A+ E
Sbjct: 826 FKGTIAEASPGVFTCHG-VYDTKGKTITVSELPIGSWTNEYKEFLESLIEKKIVADFREK 884
Query: 776 H--------------PGPG--------RKSHPRPIAPKSYKIDDDSEEEEIEEVF----- 808
H P P R ++ S DS + I + F
Sbjct: 885 HDEKNVLFEIDFIGVPDPKILKLESTIRTTNMHAFDKNSRIRKYDSPLDIITDWFEVRKE 944
Query: 809 ----HDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQE-EED------------PDKD 851
N L K K + R + + +D T+ EED DK
Sbjct: 945 FYVKRKNYLIKDLKERVLVARNKHKFISSVNDGVLVITRRMEEDVIKDLNKMKFDKVDKS 1004
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALR 902
++YLLGM SLT ER ++L + EL +L+ +W D++A++
Sbjct: 1005 FEYLLGMKISSLTKERADKLRAEALALEEELGVLENTTTEQMWVSDINAIK 1055
>gi|297803548|ref|XP_002869658.1| hypothetical protein ARALYDRAFT_329101 [Arabidopsis lyrata subsp.
lyrata]
gi|297315494|gb|EFH45917.1| hypothetical protein ARALYDRAFT_329101 [Arabidopsis lyrata subsp.
lyrata]
Length = 1089
Score = 408 bits (1049), Expect = e-110, Method: Compositional matrix adjust.
Identities = 251/640 (39%), Positives = 354/640 (55%), Gaps = 112/640 (17%)
Query: 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFD 89
M++E Y + S EHILL PD Y+GS + T+T+++ E M +RE+ +VP +I D
Sbjct: 1 MAIE--YTEMSLPEHILLHPDLYLGSTKEQTQTVFVY--ENGEMVKREVNFVPAFLRIID 56
Query: 90 EILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
EIL+NA DNKQRDP M+ +++ ++ E I ++N+G GIPV+ +L
Sbjct: 57 EILINAADNKQRDPCMDSLRVFIDDEKGKICIYNSGSGIPVI----------------IL 100
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSN-YNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
+ NY +P ++FG +LT+S ++D E K+TGGRNG GAKL NIFSS+F +E
Sbjct: 101 DNDNY----------LPHILFGRILTTSVIHDDNEKKITGGRNGLGAKLTNIFSSEFKIE 150
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ E K F +V+++NM K + S KD FT+I+FTPDL K M + MV L+
Sbjct: 151 TADGENK--FTKVFRNNM-KDEDDHLISSCKDTFTQISFTPDLQKLNMKCFGESMVSLMR 207
Query: 269 RRAYDAAASTKD-VKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPR-WEV 326
+R + A + VKV LNG +P +F +YV LY + E DP+ I E N W++
Sbjct: 208 KRVLEVANFLGNSVKVELNGVHIPSISFTNYVGLYLNSSKEP-DPLPRIAEESNVDGWDI 266
Query: 327 AIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNK 386
+ SD FQQ SFVNS+AT GG HVD V + I+E+ K+KNK+
Sbjct: 267 CVTSSDGEFQQFSFVNSVATINGGTHVDYVTSQLTNHIVEIAKRKNKN------------ 314
Query: 387 FNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ 446
LK + +H+W+F+N I +PTFD +E +T
Sbjct: 315 ------------------------THLKTHVLMSHLWVFVNARIDSPTFDFPKREKLTSD 350
Query: 447 KGSFGS------------------------------TCVPKLEDANDAGTKNSIDCTLIL 476
+ SF S + L DAN AG S CTLIL
Sbjct: 351 QSSFISKGKLSEEFLKKVAKSAVVEKLLSLATFKQRLTIENLVDANHAGGDLSQKCTLIL 410
Query: 477 TEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYS 536
TEGDSAK+L + G+ + R+ YGV+PLRGKL+NV++A+ +I +N I ++++I+GL+
Sbjct: 411 TEGDSAKALPMVGMSALNRNLYGVYPLRGKLINVKKASEARITKNKVIRDIMEIIGLK-- 468
Query: 537 KKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL--PFLEEFITPI 594
K Y ++ K+LRYGRLMIMTDQD DG+HIKGLIIN H WP+LL L F+ EFITP+
Sbjct: 469 KCYNKYKNTKSLRYGRLMIMTDQDHDGTHIKGLIINLFHTFWPSLLELSPSFIVEFITPL 528
Query: 595 IKATK---AREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+KAT+ R E YS P + W +T + I YYK
Sbjct: 529 VKATQHGTHRIE-RIYSNPAYNNW-SKTIEHDKWSIDYYK 566
Score = 110 bits (274), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 80/129 (62%), Gaps = 4/129 (3%)
Query: 642 KMNLHKVTSDSI---SMFIGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVD 698
++ +HK D + ++F + PE ++PI+PMVLVNG++ +G GW IP+++PR I
Sbjct: 760 RLLIHKDDDDILEYHNVFGRKRHPECFLPIMPMVLVNGSQSVGMGWNRFIPSYDPRVISS 819
Query: 699 NIKRMIRGEDPLPMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDK-LEITELQVGKWTT 757
NIKR++RGE PM PWY+NFKG+I + + G + D D+ + ITEL V WT
Sbjct: 820 NIKRLLRGETQTPMLPWYRNFKGDIKQVSSNEYTTTGIYDVNDKDRSIRITELPVHVWTM 879
Query: 758 DYKDTLDTL 766
+Y L+ L
Sbjct: 880 NYLKVLERL 888
>gi|351705039|gb|EHB07958.1| DNA topoisomerase 2-beta [Heterocephalus glaber]
Length = 1917
Score = 404 bits (1039), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/330 (59%), Positives = 241/330 (73%), Gaps = 27/330 (8%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
+ K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T
Sbjct: 64 AANKNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVT 122
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
+VPGLYKIFDEILVNA DNKQRD M CIKI+++ E+N IS+WNNGKGIPVVEHK EK++
Sbjct: 123 FVPGLYKIFDEILVNAADNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEHKVEKVY 182
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCN 199
VP +IF G LLTSSNY+D+E KVTGGRNGYGAKLCN
Sbjct: 183 VPALIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCN 217
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSL 259
IFS+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM L
Sbjct: 218 IFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKL 277
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYE 318
DKD+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E
Sbjct: 278 DKDIVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHE 337
Query: 319 NVNPRWEVAIAPSDRGFQQVSFVNSIATTK 348
N RW+V + S++GFQQ+SFVNSIATTK
Sbjct: 338 LANERWDVCLTLSEKGFQQISFVNSIATTK 367
Score = 385 bits (989), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/335 (57%), Positives = 226/335 (67%), Gaps = 80/335 (23%)
Query: 342 NSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTL 401
N I GGRHVD VVD +V ++IEVVKKKNK
Sbjct: 657 NGILHKGGGRHVDYVVDQVVGKLIEVVKKKNK---------------------------- 688
Query: 402 IDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC------- 454
G+++KPFQVKNHIW+FINCLI NPTFDSQTKENMTLQ SFGS C
Sbjct: 689 -------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFF 741
Query: 455 --------------------------------------VPKLEDANDAGTKNSIDCTLIL 476
+PKL+DANDAG K+S++CTLIL
Sbjct: 742 KAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLIL 801
Query: 477 TEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYS 536
TEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HKQI+ENAEINN++KI+GLQY
Sbjct: 802 TEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYK 861
Query: 537 KKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIK 596
K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL+ FLEEFITPI+K
Sbjct: 862 KSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVK 921
Query: 597 ATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
A+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 922 ASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 956
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 1177 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLEGLDPHPMLPNYKN 1236
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 1237 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 1291
Score = 65.1 bits (157), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Query: 832 EGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPT 891
+ + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E+N LK+K+P+
Sbjct: 1446 QNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKRKSPS 1503
Query: 892 DLWSDDLDALREK-DKI 907
DLW +DL A E+ DK+
Sbjct: 1504 DLWKEDLAAFVEELDKV 1520
>gi|448928346|gb|AGE51917.1| DNA topoisomerase II [Paramecium bursaria Chlorella virus CVM-1]
Length = 1058
Score = 404 bits (1038), Expect = e-109, Method: Compositional matrix adjust.
Identities = 252/640 (39%), Positives = 352/640 (55%), Gaps = 128/640 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K SQ EH+L RPDTY+GSVE ++ + + ++++ Y P KIFDEILVN+
Sbjct: 5 YIKLSQREHVLARPDTYVGSVEKELRNDFVY--DGAKITKKDVLYSPAFLKIFDEILVNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D R M +K+T+++++ IS++N+G IP+ E DE +++P MIF
Sbjct: 63 ADCFNRGGAMTTLKVTISKDS--ISIFNDGCSIPL-EKNDEGIYIPEMIF---------- 109
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLL+ N++D E++ GRNGYG+KL NIFS F VE +K
Sbjct: 110 ---------------GHLLSGENFDDTEERTGAGRNGYGSKLTNIFSKIFSVEIYDGSHK 154
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
+ Q W DNM V+ +I SK +F PDL +F MT +D D ++ RR YD A
Sbjct: 155 --YVQSWSDNMISVSKAKITKSSKAPSITTSFVPDLARFGMTDIDDDTRSILVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A V+VFL+G++L VK DY KLYTD K+++E+ + W + +AP++ F
Sbjct: 213 AVLGSVRVFLDGKRLEVKTPLDYFKLYTDE--------KVVFESADG-WSIGVAPANE-F 262
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
VSFVN+ A +GG HVDAVV++I K ++E KK
Sbjct: 263 ACVSFVNASA-ARGGTHVDAVVNSIAKAVVEAASKK------------------------ 297
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--- 452
KT++ KP VKN +++F+N IVNPTF SQTK+ +T + F
Sbjct: 298 ---KTIV-----------KPTMVKNKLFVFVNAKIVNPTFSSQTKDILTSRNIKFSPSAA 343
Query: 453 ----------------------------------------TCVPKLEDANDAGTKNSIDC 472
T + KL DA AGTKNS C
Sbjct: 344 FLKKATGLVLDAVIAETNVRESLVDARLLKKTDGVKKTRLTGIKKLTDAAWAGTKNSGLC 403
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA +GL VVGR++YG+FPLRGKLLNVR+A+ I NAEI + +ILG
Sbjct: 404 TLILTEGDSAATLATAGLAVVGRERYGIFPLRGKLLNVRDASVSSIAANAEIAAIKQILG 463
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
LQ K Y +D +LRYG +M+MTD D DGSHI L++NF H +P+LL +P FL++F
Sbjct: 464 LQVGKTY---KDASSLRYGSVMLMTDADVDGSHISALVMNFFHAQFPSLLAVPGFLKKFS 520
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A++ ++ FYSLP++E WK+ T + + IKY+K
Sbjct: 521 TPIVVASRGKDIKEFYSLPDYESWKQNTADCAKWSIKYFK 560
Score = 127 bits (318), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 78/108 (72%), Gaps = 1/108 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+P IP +LVNGA GIGTG+ T IP++NP++I+DN+KR+I G++ +PM PWYK F
Sbjct: 769 IEPEWYVPAIPFLLVNGANGIGTGFSTDIPSYNPKDIIDNVKRLISGKEMVPMTPWYKGF 828
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
G I + F G +A ++ + ++EL +G WT+DYKD L+ L+
Sbjct: 829 TGTIVQNDNGTFTCKG-VAKVNGKVVVVSELPIGTWTSDYKDFLEGLV 875
>gi|448929697|gb|AGE53264.1| DNA topoisomerase II [Paramecium bursaria Chlorella virus Fr5L]
Length = 1058
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 252/640 (39%), Positives = 351/640 (54%), Gaps = 128/640 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K SQ EH+L RPDTY+G+VE ++ + + ++++ Y P KIFDEILVN+
Sbjct: 5 YIKLSQREHVLARPDTYVGAVEKELRNDFVYDGA--KITKKDVLYSPAFLKIFDEILVNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D R M +K+T+++++ ISV+N+G IP+ E DE +++P MIF
Sbjct: 63 ADCFNRGGAMTTLKVTISKDS--ISVYNDGCSIPL-EKNDEGIYIPEMIF---------- 109
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLL+ N++D E++ GRNGYG+KL NIFS F VE S +K
Sbjct: 110 ---------------GHLLSGENFDDTEERTGAGRNGYGSKLTNIFSKTFAVEIYDSSHK 154
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
+ Q W DNM V+ +I SK +F PDL +F M +D D ++ RR YD A
Sbjct: 155 --YVQSWSDNMISVSKAKITKSSKVPSITTSFVPDLARFGMVDIDDDTRSILVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A V+VFL+G++L VK DY KLYTD K+++E + W + +AP++ F
Sbjct: 213 AVLGSVRVFLDGKRLDVKTPLDYFKLYTDE--------KVVFETADG-WSIGVAPANE-F 262
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
VSFVN+ A +GG HVDAVV++I K ++E KK
Sbjct: 263 ACVSFVNASA-ARGGTHVDAVVNSIAKAVVEAASKK------------------------ 297
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--- 452
KT++ KP VKN +++F+N +VNPTF SQTK+ +T + F
Sbjct: 298 ---KTIV-----------KPAMVKNKLFVFVNAKVVNPTFSSQTKDILTSRNIKFSPSAT 343
Query: 453 ----------------------------------------TCVPKLEDANDAGTKNSIDC 472
T V KL DA AGTKNS C
Sbjct: 344 FLKKATSLVLDAVIAETNVRESLVDARLLKKTDGVKKTRLTGVKKLTDAAWAGTKNSGLC 403
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA +GL VVGR++YG+FPLRGKLLNVR+A+ I NAEI + +ILG
Sbjct: 404 TLILTEGDSAATLATAGLAVVGRERYGIFPLRGKLLNVRDASVSSIAANAEIAAIKQILG 463
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
LQ K Y +D +LRYG +M+MTD D DGSHI L++NF H +P+LL +P FL++F
Sbjct: 464 LQVGKTY---KDASSLRYGSVMLMTDADVDGSHISALVMNFFHAQFPSLLAVPGFLKKFS 520
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A++ ++ FYSLP++E WK+ T + + IKY+K
Sbjct: 521 TPIVVASRGKDINEFYSLPDYESWKQNTADCAKWSIKYFK 560
Score = 127 bits (320), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+P IP +LVNGA GIGTG+ T IP++NP++I+DN+KR+I G++ +PM PWYK F
Sbjct: 769 IEPEWYVPAIPFLLVNGANGIGTGFSTDIPSYNPKDIIDNVKRLISGKEMMPMTPWYKGF 828
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
G I + F G +A + + ++EL VG WT+DYKD L+ L+
Sbjct: 829 TGTIVQNDNGTFTCKG-VAKVSGKSVVVSELPVGTWTSDYKDFLEGLV 875
Score = 40.8 bits (94), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
Y YLL M+ SLT+ER +L + + EL IL+ + T +WSDDL+ +
Sbjct: 1007 YKYLLDMSISSLTLERAEKLRLEAEKLKKELCILQNTSRTQMWSDDLNNI 1056
>gi|443704734|gb|ELU01637.1| hypothetical protein CAPTEDRAFT_188478, partial [Capitella teleta]
Length = 321
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/322 (61%), Positives = 235/322 (72%), Gaps = 27/322 (8%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++SVE+IYQKK+QLEHILLRPDTYIGS EP+T+ MW+ + M +REIT+VPGLYKIF
Sbjct: 25 RLSVERIYQKKTQLEHILLRPDTYIGSTEPVTQLMWVWDAADECMVQREITFVPGLYKIF 84
Query: 89 DEILVNACDNKQRDPK-MNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGH 147
DEILVNA DNK RDPK MN IKI ++ E+N I +WNNGKGIPVVEH+ EKM+VPT+I
Sbjct: 85 DEILVNAADNKMRDPKGMNTIKIDIDSESNKIKIWNNGKGIPVVEHQKEKMYVPTLI--- 141
Query: 148 LLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVV 207
FGHLLTSSNY+D E KV GGRNGYGAKLCNIFSSKF+V
Sbjct: 142 ----------------------FGHLLTSSNYDDTEKKVVGGRNGYGAKLCNIFSSKFIV 179
Query: 208 ETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLI 267
ETS EYKK+FKQ W NM K +I DD+T ITF PDL KFKM LD D + L
Sbjct: 180 ETSSHEYKKAFKQSWSANMMKAGEVKIIPSKGDDYTCITFHPDLAKFKMEKLDADTIALF 239
Query: 268 TRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEV 326
TRRAYD S+K VKVFLNG++LP+K F+DYV LY ++ D+ P+K+++E VN RWEV
Sbjct: 240 TRRAYDMCGSSKGVKVFLNGKRLPIKGFKDYVDLYIKNKMDDTNTPLKLVHEVVNDRWEV 299
Query: 327 AIAPSDRGFQQVSFVNSIATTK 348
I SD+GFQQVSFVNSIATTK
Sbjct: 300 GITLSDKGFQQVSFVNSIATTK 321
>gi|448929348|gb|AGE52916.1| DNA topoisomerase II [Paramecium bursaria Chlorella virus CZ-2]
Length = 1059
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 252/640 (39%), Positives = 351/640 (54%), Gaps = 128/640 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K SQ EH+L RPDTY+G+VE ++ + + ++++ Y P KIFDEILVN+
Sbjct: 5 YIKLSQREHVLARPDTYVGAVEKELRNDFVYDGA--KITKKDVLYSPAFLKIFDEILVNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D R M +K+T+++++ ISV+N+G IP+ E DE +++P MIF
Sbjct: 63 ADCFNRGGAMTTLKVTISKDS--ISVYNDGCSIPL-EKNDEGIYIPEMIF---------- 109
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLL+ N++D E++ GRNGYG+KL NIFS F VE S +K
Sbjct: 110 ---------------GHLLSGENFDDTEERTGAGRNGYGSKLTNIFSKTFAVEIYDSSHK 154
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
+ Q W DNM V+ +I SK +F PDL +F M +D D ++ RR YD A
Sbjct: 155 --YVQSWSDNMISVSKAKITKSSKVPSITTSFVPDLARFGMVDIDDDTRSILVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A V+VFL+G++L VK DY KLYTD K+++E + W + +AP++ F
Sbjct: 213 AVLGSVRVFLDGKRLDVKTPLDYFKLYTDE--------KVVFETADG-WSIGVAPANE-F 262
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
VSFVN+ A +GG HVDAVV++I K ++E KK
Sbjct: 263 ACVSFVNASA-ARGGTHVDAVVNSIAKAVVEAASKK------------------------ 297
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--- 452
KT++ KP VKN +++F+N +VNPTF SQTK+ +T + F
Sbjct: 298 ---KTIV-----------KPAMVKNKLFVFVNAKVVNPTFSSQTKDILTSRNIKFSPSAT 343
Query: 453 ----------------------------------------TCVPKLEDANDAGTKNSIDC 472
T V KL DA AGTKNS C
Sbjct: 344 FLKKATSLVLDAVIAETNVRESLVDARLLKKTDGVKKTRLTGVKKLTDAAWAGTKNSGLC 403
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA +GL VVGR++YG+FPLRGKLLNVR+A+ I NAEI + +ILG
Sbjct: 404 TLILTEGDSAATLATAGLAVVGRERYGIFPLRGKLLNVRDASVSSIAANAEIAAIKQILG 463
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
LQ K Y +D +LRYG +M+MTD D DGSHI L++NF H +P+LL +P FL++F
Sbjct: 464 LQVGKTY---KDASSLRYGSVMLMTDADVDGSHISALVMNFFHAQFPSLLAVPGFLKKFS 520
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A++ ++ FYSLP++E WK+ T + + IKY+K
Sbjct: 521 TPIVVASRGKDINEFYSLPDYESWKKNTADCAKWSIKYFK 560
Score = 129 bits (324), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 79/108 (73%), Gaps = 1/108 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+P IP +LVNGA GIGTG+ T IP++NP++I+DN+KR+I G++ +PM PWYK F
Sbjct: 770 IEPEWYVPAIPFLLVNGANGIGTGFSTDIPSYNPKDIIDNVKRLIAGKEMVPMTPWYKGF 829
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
G ID + F G +A ++ + ++EL +G WT+DYKD L+ L+
Sbjct: 830 TGIIDQNENGTFTCKG-VANVNGKTVVVSELPIGTWTSDYKDFLEGLV 876
>gi|448926996|gb|AGE50571.1| DNA topoisomerase II [Paramecium bursaria Chlorella virus CVA-1]
gi|448928680|gb|AGE52250.1| DNA topoisomerase II [Paramecium bursaria Chlorella virus CVR-1]
Length = 1058
Score = 402 bits (1033), Expect = e-108, Method: Compositional matrix adjust.
Identities = 249/640 (38%), Positives = 353/640 (55%), Gaps = 128/640 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K SQ +HIL+RPDTY+GSVE ++ + + + ++++ Y P KIFDEILVN+
Sbjct: 5 YIKLSQRDHILIRPDTYVGSVEKELRNEYIF--DGSKITKKDVLYSPAFMKIFDEILVNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D R M +K+T+++++ ISV+N+G IP+ E DE +++P MIF
Sbjct: 63 ADCFNRGGAMTTLKVTISKDS--ISVYNDGCSIPL-EKNDEGIYIPEMIF---------- 109
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLL+ N++D +++ GRNGYG+KL NIFS F VE +K
Sbjct: 110 ---------------GHLLSGENFDDTKERTGAGRNGYGSKLTNIFSKVFSVEIYDGSHK 154
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
+ Q W DNM+ T+ +I SK +F PDL +F M +D D ++ RR YD A
Sbjct: 155 --YVQSWTDNMNSSTNAKITKSSKTQSITTSFVPDLARFGMVDIDDDTRSILVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A V+VFL+ ++L VK DY KLYTD K+++E+ + W + +AP++ F
Sbjct: 213 AVLGSVRVFLDNKRLDVKTPLDYFKLYTDE--------KVVFESADG-WSIGVAPANE-F 262
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
VSFVN+ A +GG HVDAVV++I K ++E KK
Sbjct: 263 ACVSFVNASA-ARGGTHVDAVVNSIAKAVVEAASKK------------------------ 297
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--- 452
KT++ KP VKN +++F+N +VNPTF SQTK+ +T + F
Sbjct: 298 ---KTIV-----------KPAMVKNKLFVFVNAKVVNPTFSSQTKDILTSRNIKFSPSAA 343
Query: 453 ----------------------------------------TCVPKLEDANDAGTKNSIDC 472
T + KL DA AGTKNS C
Sbjct: 344 FLKKATGLVLDAVIAETNVRESLVDARLLKKTDGVKKTRLTGIKKLTDAAWAGTKNSGLC 403
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA +GL VVGR++YG+FPLRGKLLNVR+A+ I NAEI + +ILG
Sbjct: 404 TLILTEGDSAATLATAGLAVVGRERYGIFPLRGKLLNVRDASVSSIAANAEIAAIKQILG 463
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
LQ K Y +D +LRYG +M+MTD D DGSHI L++NF H +P+LL +P FL++F
Sbjct: 464 LQVGKTY---KDASSLRYGSVMLMTDADVDGSHISALVMNFFHAQFPSLLAVPGFLKKFS 520
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A++ ++ FYSLP++E WK+ T + + IKY+K
Sbjct: 521 TPIVVASRGKDIKEFYSLPDYESWKQNTADCAKWSIKYFK 560
Score = 127 bits (318), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 78/108 (72%), Gaps = 1/108 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+P IP +LVNGA GIGTG+ T IP++NP++I+DN+KR+I G++ +PM PWYK F
Sbjct: 769 IEPEWYVPAIPFLLVNGANGIGTGFSTDIPSYNPKDIIDNVKRLISGKEMVPMTPWYKGF 828
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
G I + F G +A ++ + ++EL +G WT+DYKD L+ L+
Sbjct: 829 TGTIVQNDNGTFTCKG-VAKVNGKVVVVSELPIGTWTSDYKDFLEGLV 875
>gi|448925309|gb|AGE48889.1| DNA topoisomerase II [Paramecium bursaria Chlorella virus AP110A]
Length = 1058
Score = 402 bits (1032), Expect = e-108, Method: Compositional matrix adjust.
Identities = 249/640 (38%), Positives = 354/640 (55%), Gaps = 128/640 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K SQ +HIL+RPDTY+GSVE ++ + + + ++++ Y P KIFDEILVN+
Sbjct: 5 YIKLSQRDHILIRPDTYVGSVEKELRNEYIF--DGSKITKKDVMYSPAFMKIFDEILVNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D R M +K+T+++++ ISV+N+G IP+ E DE +++P MIF
Sbjct: 63 ADCFNRGGAMTTLKVTISKDS--ISVYNDGCSIPL-EKNDEGIYIPEMIF---------- 109
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLL+ N++D +++ GRNGYG+KL NIFS F VE +
Sbjct: 110 ---------------GHLLSGENFDDTKERTGAGRNGYGSKLTNIFSKVFSVE--IYDGL 152
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
+ + Q W DNM+ T+ +I SK +F PDL +F M +D D ++ RR YD A
Sbjct: 153 QKYVQSWTDNMNSSTNAKITKSSKAPSITTSFVPDLARFGMADIDDDTRSILVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A V+VFL+G++L VK DY KLYTD K+++E+ + W + +AP++ F
Sbjct: 213 AVLGSVRVFLDGKRLDVKTPLDYFKLYTDE--------KVVFESADG-WSIGVAPANE-F 262
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
VSFVN+ A +GG HVDAVV++I K ++E KK
Sbjct: 263 ACVSFVNASA-ARGGTHVDAVVNSIAKAVVEAASKK------------------------ 297
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--- 452
KT++ KP VKN +++F+N +VNPTF SQTK+ +T + F
Sbjct: 298 ---KTIV-----------KPAMVKNKLFVFVNAKVVNPTFSSQTKDILTSRNIKFSPSAA 343
Query: 453 ----------------------------------------TCVPKLEDANDAGTKNSIDC 472
T + KL DA AGTKNS C
Sbjct: 344 FLKKATGLVLDAVIAETNVRESLVDARLLKKTDGVKKTRLTGIKKLTDAAWAGTKNSGLC 403
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA +GL VVGR++YG+FPLRGKLLNVR+A+ I NAEI + +ILG
Sbjct: 404 TLILTEGDSAATLATAGLAVVGRERYGIFPLRGKLLNVRDASVSSIAANAEIAAIKQILG 463
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
LQ K Y +D +LRYG +M+MTD D DGSHI L++NF H +P+LL +P FL++F
Sbjct: 464 LQVGKTY---KDASSLRYGSVMLMTDADVDGSHISALVMNFFHAQFPSLLAVPGFLKKFS 520
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A++ ++ FYSLP++E WK+ T + + IKY+K
Sbjct: 521 TPIVVASRGKDIKEFYSLPDYESWKQNTADCAKWSIKYFK 560
Score = 126 bits (317), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 78/108 (72%), Gaps = 1/108 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+P IP +LVNGA GIGTG+ T IP++NP++I+DN+KR+I G++ +PM PWYK F
Sbjct: 769 IEPEWYVPAIPFLLVNGANGIGTGFSTDIPSYNPKDIIDNVKRLISGKEMVPMTPWYKEF 828
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
G I + F G +A ++ + ++EL +G WT+DYKD L+ L+
Sbjct: 829 TGSIVQNDNGTFTCKG-VAKVNGKVVVVSELPIGTWTSDYKDFLEGLV 875
>gi|448926329|gb|AGE49906.1| DNA topoisomerase II [Paramecium bursaria Chlorella virus Can18-4]
Length = 1058
Score = 401 bits (1031), Expect = e-108, Method: Compositional matrix adjust.
Identities = 250/640 (39%), Positives = 351/640 (54%), Gaps = 128/640 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K SQ EH+L RPDTY+GSVE ++ + + ++++ Y P KIFDEILVN+
Sbjct: 5 YIKLSQREHVLARPDTYVGSVEKELRNDFVY--DGAKITKKDVLYSPAFLKIFDEILVNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D R M+ +K+ +++++ ISV+N+G IP+ E DE +++P MIF
Sbjct: 63 ADCFNRGGAMSTLKVAISKDS--ISVYNDGCSIPL-EKNDEGVYIPEMIF---------- 109
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLL+ N++D E++ GRNGYG+KL NIFS FVVE +K
Sbjct: 110 ---------------GHLLSGENFDDTEERTGAGRNGYGSKLTNIFSKTFVVEIYDGSHK 154
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
+ Q W DNM V+ +I SK +F PDL +F M +D D ++ RR YD A
Sbjct: 155 --YVQSWSDNMISVSKAKITKSSKVPSITTSFVPDLARFGMADIDDDTRSILVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A V+VFL+G++L VK DY KLYTD K+++E+ + W + +AP++ F
Sbjct: 213 AVLGSVRVFLDGKRLDVKTPLDYFKLYTDE--------KVVFESADG-WSIGVAPANE-F 262
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
VSFVN+ A +GG HVD VV++I K ++E KK
Sbjct: 263 ACVSFVNASA-ARGGTHVDTVVNSIAKAVVEAASKK------------------------ 297
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--- 452
KT++ KP VKN +++F+N +VNPTF SQTK+ +T + F
Sbjct: 298 ---KTIV-----------KPAMVKNKLFVFVNAKVVNPTFSSQTKDILTSRNIKFSPSAA 343
Query: 453 ----------------------------------------TCVPKLEDANDAGTKNSIDC 472
T + KL DA AGTKNS C
Sbjct: 344 FLKKATGLVLDAVIAETNVRESLVDARLLKKTDGVKKTRLTGIKKLTDAAWAGTKNSGLC 403
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA +GL VVGR++YG+FPLRGKLLNVR+A+ I NAEI + +ILG
Sbjct: 404 TLILTEGDSAATLATAGLAVVGRERYGIFPLRGKLLNVRDASVSSIAANAEIAAIKQILG 463
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
LQ K Y +D +LRYG +M+MTD D DGSHI L++NF H +P+LL +P FL++F
Sbjct: 464 LQVGKTY---KDASSLRYGSVMLMTDADVDGSHISALVMNFFHAQFPSLLAVPGFLKKFS 520
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A++ ++ FYSLP++E WK+ T + + IKY+K
Sbjct: 521 TPIVVASRGKDIKEFYSLPDYESWKQNTADCAKWSIKYFK 560
Score = 128 bits (321), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 78/108 (72%), Gaps = 1/108 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+P IP +LVNGA GIGTG+ T IP++NP++I+DN+KR+I G+D +PM PWYK F
Sbjct: 769 IEPEWYVPAIPFLLVNGANGIGTGFSTDIPSYNPKDIIDNVKRLISGKDMVPMTPWYKGF 828
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
G I + F G +A ++ + ++EL +G WT+DYKD L+ L+
Sbjct: 829 TGIIVQNDNGTFTCKG-VAKVNGKTVVVSELPIGTWTSDYKDFLEGLV 875
>gi|448934521|gb|AGE58074.1| DNA topoisomerase II [Paramecium bursaria Chlorella virus NW665.2]
Length = 1058
Score = 401 bits (1031), Expect = e-108, Method: Compositional matrix adjust.
Identities = 249/640 (38%), Positives = 353/640 (55%), Gaps = 128/640 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K SQ +HIL+RPDTY+GSVE ++ + + + ++++ Y P KIFDEILVN+
Sbjct: 5 YIKLSQRDHILIRPDTYVGSVEKELRNEYIF--DGSKITKKDVLYSPAFMKIFDEILVNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D R M +K+T++ N+ISV+N+G IP+ E DE +++P MIF
Sbjct: 63 ADCFNRGGAMTTLKVTISN--NSISVYNDGCSIPL-EKNDEGIYIPEMIF---------- 109
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLL+ N++D +++ GRNGYG+KL NIFS F VE +
Sbjct: 110 ---------------GHLLSGENFDDTKERTGAGRNGYGSKLTNIFSKVFSVE--IYDGL 152
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
+ + Q W DNM+ T+ +I SK +F PDL +F MT +D D ++ RR YD A
Sbjct: 153 QKYVQSWTDNMNSSTNAKITKSSKAQSITTSFVPDLARFGMTDIDNDTRSILVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A V+VFL+G++L VK DY KLYT+ K+++E+ + W + +AP++ F
Sbjct: 213 AVLGSVRVFLDGKRLEVKTPLDYFKLYTNE--------KVVFESADG-WSIGVAPANE-F 262
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
VSFVN+ A +GG HVD VV++I K ++E KK
Sbjct: 263 ACVSFVNASA-ARGGTHVDTVVNSIAKAVVEAASKK------------------------ 297
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--- 452
KT++ KP VKN +++F+N +VNPTF SQTK+ +T + F
Sbjct: 298 ---KTIV-----------KPAMVKNKLFVFVNAKVVNPTFSSQTKDILTSRNIKFSPSAA 343
Query: 453 ----------------------------------------TCVPKLEDANDAGTKNSIDC 472
T + KL DA AGTKNS C
Sbjct: 344 FLKKATGLVLDAVIAETNVRESLVDARLLKKTDGVKKTRLTGIKKLTDAAWAGTKNSGLC 403
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA +GL VVGR++YG+FPLRGKLLNVR+A+ I NAEI + +ILG
Sbjct: 404 TLILTEGDSAATLATAGLAVVGRERYGIFPLRGKLLNVRDASVSSIAANAEIAAIKQILG 463
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
LQ K Y +D +LRYG +M+MTD D DGSHI L++NF H +P+LL +P FL++F
Sbjct: 464 LQVGKTY---KDASSLRYGSVMLMTDADVDGSHISALVMNFFHAQFPSLLAVPGFLKKFS 520
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A++ ++ FYSLP++E WK+ T + + IKY+K
Sbjct: 521 TPIVVASRGKDINEFYSLPDYESWKKNTADCAKWSIKYFK 560
Score = 130 bits (327), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 78/108 (72%), Gaps = 1/108 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+P IP +LVNGA GIGTG+ T IP++NP++I+DN+KR+I G++ +PM PWY+ F
Sbjct: 769 IEPEWYVPAIPFLLVNGANGIGTGFSTDIPSYNPKDIIDNVKRLISGKEMVPMSPWYRGF 828
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
G ID + F G +A + + ++EL VG WT+DYKD L+ L+
Sbjct: 829 TGTIDQNDNGTFTCKG-VAKVSGKSVVVSELPVGTWTSDYKDFLEGLV 875
>gi|53854901|gb|AAU95770.1| topoisomerase II [Paramecium bursaria Chlorella virus Marburg 1]
Length = 1058
Score = 401 bits (1030), Expect = e-108, Method: Compositional matrix adjust.
Identities = 251/640 (39%), Positives = 351/640 (54%), Gaps = 128/640 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K SQ EH+L RPDTY+GSVE ++ + + ++++ Y P KIFDEILVN+
Sbjct: 5 YIKLSQREHVLARPDTYVGSVEKELRNDFVY--DGAKITKKDVLYSPAFLKIFDEILVNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D R M +K+T+++++ IS++N+G I + E DE +++P MIF
Sbjct: 63 ADCFNRGGAMTTLKVTISKDS--ISIFNDGCSISL-EKNDEGIYIPEMIF---------- 109
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLL+ N++D E++ GRNGYG+KL NIFS F VE +K
Sbjct: 110 ---------------GHLLSGENFDDTEERTGAGRNGYGSKLTNIFSKIFSVEIYDGSHK 154
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
+ Q W DNM V+ +I SK +F PDL +F MT +D D ++ RR YD A
Sbjct: 155 --YVQSWSDNMISVSKAKITKSSKAPSITTSFVPDLARFGMTDIDDDTRSILVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A V+VFL+G++L VK DY KLYTD K+++E+ + W + +AP++ F
Sbjct: 213 AVLGSVRVFLDGKRLEVKTPLDYFKLYTDE--------KVVFESADG-WSIGVAPANE-F 262
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
VSFVN+ A +GG HVDAVV++I K ++E KK
Sbjct: 263 ACVSFVNASA-ARGGTHVDAVVNSIAKAVVEAASKK------------------------ 297
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--- 452
KT++ KP VKN +++F+N IVNPTF SQTK+ +T + F
Sbjct: 298 ---KTIV-----------KPTMVKNKLFVFVNAKIVNPTFSSQTKDILTSRNIKFSPSAA 343
Query: 453 ----------------------------------------TCVPKLEDANDAGTKNSIDC 472
T + KL DA AGTKNS C
Sbjct: 344 FLKKATGLVLDAVIAETNVRESLVDARLLKKTDGVKKTRLTGIKKLTDAAWAGTKNSGLC 403
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA +GL VVGR++YG+FPLRGKLLNVR+A+ I NAEI + +ILG
Sbjct: 404 TLILTEGDSAATLATAGLAVVGRERYGIFPLRGKLLNVRDASVSSIAANAEIAAIKQILG 463
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
LQ K Y +D +LRYG +M+MTD D DGSHI L++NF H +P+LL +P FL++F
Sbjct: 464 LQVGKTY---KDASSLRYGSVMLMTDADVDGSHISALVMNFFHAQFPSLLAVPGFLKKFS 520
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A++ ++ FYSLP++E WK+ T + + IKY+K
Sbjct: 521 TPIVVASRGKDIKEFYSLPDYESWKQNTADCAKWSIKYFK 560
Score = 127 bits (318), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 78/108 (72%), Gaps = 1/108 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+P IP +LVNGA GIGTG+ T IP++NP++I+DN+KR+I G++ +PM PWYK F
Sbjct: 769 IEPEWYVPAIPFLLVNGANGIGTGFSTDIPSYNPKDIIDNVKRLISGKEMVPMTPWYKGF 828
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
G I + F G +A ++ + ++EL +G WT+DYKD L+ L+
Sbjct: 829 TGTIVQNDNGTFTCKG-VAKVNGKVVVVSELPIGTWTSDYKDFLEGLV 875
>gi|155370647|ref|YP_001426181.1| hypothetical protein FR483_N549R [Paramecium bursaria Chlorella
virus FR483]
gi|155123967|gb|ABT15834.1| hypothetical protein FR483_N549R [Paramecium bursaria Chlorella
virus FR483]
Length = 1058
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 250/640 (39%), Positives = 350/640 (54%), Gaps = 128/640 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K SQ EH+L RPDTY+G+VE ++ + + ++++ Y P KIFDEILVN+
Sbjct: 5 YIKLSQREHVLARPDTYVGAVEKELRNDFVYDGA--KITKKDVLYSPAFLKIFDEILVNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D R M +K+ ++++ ISV+N+G IP+ E DE +++P MIF
Sbjct: 63 ADCFNRGGAMTTLKVAISKDC--ISVYNDGCSIPL-EKNDEGVYIPEMIF---------- 109
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLL+ N++D E++ GRNGYG+KL NIFS F VE +K
Sbjct: 110 ---------------GHLLSGENFDDTEERTGAGRNGYGSKLTNIFSKIFSVEIYDGSHK 154
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
+ Q W DNM V+ +I SK +F PDL +F MT +D D ++ RR YD A
Sbjct: 155 --YVQSWSDNMISVSKAKITKSSKAPSITTSFVPDLARFGMTDIDDDTRSILVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A V+VFL+G++L VK DY KLYTD K+++E+ + W + +AP++ F
Sbjct: 213 AVLGSVRVFLDGKRLEVKTPLDYFKLYTDE--------KVVFESADG-WSIGVAPANE-F 262
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
VSFVN+ A +GG HVDAVV++I K ++E KK
Sbjct: 263 ACVSFVNASA-ARGGTHVDAVVNSIAKAVVEAASKK------------------------ 297
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--- 452
KT++ KP VKN +++F+N +VNPTF SQTK+ +T + F
Sbjct: 298 ---KTIV-----------KPAMVKNKLFVFVNAKVVNPTFSSQTKDILTSRNIKFSPSAA 343
Query: 453 ----------------------------------------TCVPKLEDANDAGTKNSIDC 472
T + KL DA AGTKNS C
Sbjct: 344 FLKKATGLVLDAVIAETNVRESLVDARLLKKTDGVKKTRLTGIKKLTDAAWAGTKNSGLC 403
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA +GL VVGR++YG+FPLRGKLLNVR+A+ I NAEI + +ILG
Sbjct: 404 TLILTEGDSAATLATAGLAVVGRERYGIFPLRGKLLNVRDASVSSIAANAEIAAIKQILG 463
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
LQ K Y +D +LRYG +M+MTD D DGSHI L++NF H +P+LL +P FL++F
Sbjct: 464 LQVGKTY---KDASSLRYGSVMLMTDADVDGSHISALVMNFFHAQFPSLLAVPGFLKKFS 520
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A++ ++ FYSLP++E WK+ T + + IKY+K
Sbjct: 521 TPIVVASRGKDINEFYSLPDYESWKQNTADCAKWSIKYFK 560
Score = 127 bits (318), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+P IP +LVNGA GIGTG+ T IP++NP++I+DN+KR+I G++ +PM PWYK F
Sbjct: 769 IEPEWYVPAIPFLLVNGANGIGTGFSTDIPSYNPKDIIDNVKRLISGKEMVPMSPWYKEF 828
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
G I + F G +A + + ++EL +G WT+DYKD L+ L+
Sbjct: 829 TGSIVQNDNGTFTCKG-VAKVSGKNVVVSELPIGTWTSDYKDFLEGLV 875
>gi|448935611|gb|AGE59161.1| DNA topoisomerase II [Paramecium bursaria Chlorella virus
OR0704.2.2]
Length = 1059
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 251/640 (39%), Positives = 350/640 (54%), Gaps = 128/640 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K SQ EHIL R DTY+G+VE ++ + + ++++ Y P KIFDEILVN+
Sbjct: 5 YIKLSQREHILHRADTYVGAVEKELRNDFVY--DGAKITKKDVLYSPAFLKIFDEILVNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D R M +K+T+++++ ISV+N+G IP+ E DE +++P MIF
Sbjct: 63 ADCFNRGGAMTTLKVTISKDS--ISVYNDGCSIPL-EKNDEGIYIPEMIF---------- 109
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLL+ N++D E++ GRNGYG+KL NIFS F VE S +K
Sbjct: 110 ---------------GHLLSGENFDDTEERTGAGRNGYGSKLTNIFSKTFAVEIYDSSHK 154
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
+ Q W DNM V+ +I SK +F PDL +F M +D D ++ RR YD A
Sbjct: 155 --YVQSWSDNMISVSKAKITKSSKVPSITTSFVPDLARFGMVDIDDDTRSILVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A V+VFL+G++L VK DY KLYTD K+++E + W + +AP++ F
Sbjct: 213 AVLGSVRVFLDGKRLDVKTPLDYFKLYTDE--------KVVFETADG-WSIGVAPANE-F 262
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
VSFVN+ A +GG HVDAVV++I K ++E KK
Sbjct: 263 ACVSFVNASA-ARGGTHVDAVVNSIAKAVVEAASKK------------------------ 297
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--- 452
KT++ KP VKN +++F+N +VNPTF SQTK+ +T + F
Sbjct: 298 ---KTIV-----------KPAMVKNKLFVFVNAKVVNPTFSSQTKDILTSRNIKFSPSAT 343
Query: 453 ----------------------------------------TCVPKLEDANDAGTKNSIDC 472
T + KL DA AGTKNS C
Sbjct: 344 FLKKATSLVLDAVIAETNVRESLVDARLLKKTDGVKKTRLTGIKKLTDAAWAGTKNSGLC 403
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA +GL VVGR++YG+FPLRGKLLNVR+A+ I NAEI + +ILG
Sbjct: 404 TLILTEGDSAATLATAGLAVVGRERYGIFPLRGKLLNVRDASVSSIAANAEIAAIKQILG 463
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
LQ K Y +D +LRYG +M+MTD D DGSHI L++NF H +P+LL +P FL++F
Sbjct: 464 LQVGKTY---KDASSLRYGSVMLMTDADVDGSHISALVMNFFHAQFPSLLAVPGFLKKFS 520
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A++ ++ FYSLP++E WK+ T + + IKY+K
Sbjct: 521 TPIVVASRGKDINEFYSLPDYESWKKNTADCAKWSIKYFK 560
Score = 129 bits (324), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 79/108 (73%), Gaps = 1/108 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+P IP +LVNGA GIGTG+ T IP++NP++I+DN+KR+I G++ +PM PWYK F
Sbjct: 770 IEPEWYVPAIPFLLVNGANGIGTGFSTDIPSYNPKDIIDNVKRLIAGKEMVPMTPWYKGF 829
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
G ID + F G +A ++ + ++EL +G WT+DYKD L+ L+
Sbjct: 830 TGIIDQNENGTFTCKG-VANVNGKTVVVSELPIGTWTSDYKDFLEGLV 876
>gi|155122232|gb|ABT14100.1| hypothetical protein MT325_M546R [Paramecium bursaria chlorella
virus MT325]
Length = 1058
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 249/640 (38%), Positives = 351/640 (54%), Gaps = 128/640 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K SQ EH+L RPDTY+GSVE ++ + + ++++ Y P KIFDEILVN+
Sbjct: 5 YIKLSQREHVLARPDTYVGSVEKELRNDFVYDGA--KITKKDVLYSPAFLKIFDEILVNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D R M+ +K+ +++++ ISV+N+G IP+ E DE +++P MIF
Sbjct: 63 ADCFNRGGAMSTLKVAISKDS--ISVYNDGCSIPL-EKNDEGVYIPEMIF---------- 109
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLL+ N++D E++ GRNGYG+KL NIFS FVVE +K
Sbjct: 110 ---------------GHLLSGENFDDTEERTGAGRNGYGSKLTNIFSKTFVVEIYDGSHK 154
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
+ Q W DNM V+ +I SK +F PDL +F M +D D ++ RR YD A
Sbjct: 155 --YVQSWSDNMISVSKAKITKSSKVPSITTSFVPDLARFGMADIDDDTRSILVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A V+VFL+G++L VK DY KLYT+ K+++E+ + W + +AP++ F
Sbjct: 213 AVLGSVRVFLDGKRLDVKTPLDYFKLYTNE--------KVVFESADG-WSIGVAPANE-F 262
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
VSFVN+ A +GG HVD VV++I K ++E KK
Sbjct: 263 ACVSFVNASA-ARGGTHVDTVVNSIAKAVVEAASKK------------------------ 297
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--- 452
KT++ KP VKN +++F+N +VNPTF SQTK+ +T + F
Sbjct: 298 ---KTIV-----------KPAMVKNKLFVFVNAKVVNPTFSSQTKDILTSRNIKFSPSAA 343
Query: 453 ----------------------------------------TCVPKLEDANDAGTKNSIDC 472
T + KL DA AGTKNS C
Sbjct: 344 FLKKATGLVLDAVIAETNVRESLVDARLLKKTDGVKKTRLTGIKKLTDAAWAGTKNSGLC 403
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA +GL VVGR++YG+FPLRGKLLNVR+A+ I NAEI + +ILG
Sbjct: 404 TLILTEGDSAATLATAGLAVVGRERYGIFPLRGKLLNVRDASVSSIAANAEIAAIKQILG 463
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
LQ K Y +D +LRYG +M+MTD D DGSHI L++NF H +P+LL +P FL++F
Sbjct: 464 LQVGKTY---KDASSLRYGSVMLMTDADVDGSHISALVMNFFHAQFPSLLAVPGFLKKFS 520
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A++ ++ FYSLP++E WK+ T + + IKY+K
Sbjct: 521 TPIVVASRGKDIKEFYSLPDYESWKQNTADCAKWSIKYFK 560
Score = 125 bits (313), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+P IP +LVNGA GIGTG+ T IP++NP++I++N+KR+I G++ +PM PWYK F
Sbjct: 769 IEPEWYVPAIPFLLVNGANGIGTGFSTDIPSYNPKDIINNVKRLISGKEMVPMTPWYKEF 828
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
G I + F G +A + + ++EL +G WT+DYKD L+ L+
Sbjct: 829 TGSIVQNDNGTFTCKG-VAKVSGKSVVVSELPIGTWTSDYKDFLEGLV 875
>gi|448927663|gb|AGE51236.1| DNA topoisomerase II [Paramecium bursaria Chlorella virus CVG-1]
Length = 1092
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 249/640 (38%), Positives = 350/640 (54%), Gaps = 128/640 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K SQ EH+L RPDTY+GSVE ++ + + ++++ Y P KIFDEILVN+
Sbjct: 38 YIKLSQREHVLARPDTYVGSVEKELRNEFVY--DGAKITKKDVLYSPAFLKIFDEILVNS 95
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D R M +K+ +++++ IS++N+G IP+ E DE +++P MIF
Sbjct: 96 ADCFNRGGAMTTLKVAISKDS--ISIFNDGCSIPL-EKNDEGIYIPEMIF---------- 142
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLL+ N++D E++ GRNGYG+KL NIFS F VE +K
Sbjct: 143 ---------------GHLLSGENFDDTEERTGAGRNGYGSKLTNIFSKIFSVEIYDGSHK 187
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
+ Q W DNM V+ +I SK +F PDL +F MT +D D ++ RR YD A
Sbjct: 188 --YVQSWSDNMISVSKAKITKSSKAPSITTSFVPDLARFGMTGIDDDTRSILVRRVYDMA 245
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A V+VFL+G++L VK DY KLYTD K+++E+ + W + +AP++ F
Sbjct: 246 AVLGSVRVFLDGKRLDVKTPLDYFKLYTDE--------KVVFESADG-WSIGVAPANE-F 295
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
VSFVN+ A +GG HVD VV++I K ++E KK
Sbjct: 296 ACVSFVNASA-ARGGTHVDTVVNSITKAVVEAASKK------------------------ 330
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--- 452
KT++ KP VKN +++F+N +VNPTF SQTK+ +T + F
Sbjct: 331 ---KTIV-----------KPAMVKNKLFVFVNAKVVNPTFSSQTKDILTSRNIKFSPSAA 376
Query: 453 ----------------------------------------TCVPKLEDANDAGTKNSIDC 472
T + KL DA AGTKNS C
Sbjct: 377 FLKKATGLVLDAVIAETNVRESLVDARLLKKTDGVKKTRLTGIKKLTDAAWAGTKNSGLC 436
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA +GL VVGR++YG+FPLRGKLLNVR+A+ I NAEI + +ILG
Sbjct: 437 TLILTEGDSAATLATAGLAVVGRERYGIFPLRGKLLNVRDASVSSIAANAEIAAIKQILG 496
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
LQ K Y +D +LRYG +M+MTD D DGSHI L++NF H +P+LL +P FL++F
Sbjct: 497 LQVGKTY---KDASSLRYGSVMLMTDADVDGSHISALVMNFFHAQFPSLLAVPGFLKKFS 553
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A++ ++ FYSLP++E WK+ T + + IKY+K
Sbjct: 554 TPIVVASRGKDIKEFYSLPDYESWKQNTADCAKWSIKYFK 593
Score = 127 bits (318), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+P IP +LVNGA GIGTG+ T IP++NP++I+DN+KR+I G++ +PM PWYK F
Sbjct: 803 IEPEWYVPAIPFLLVNGANGIGTGFSTDIPSYNPKDIIDNVKRLISGKEMVPMSPWYKEF 862
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
G I + F G +A + + ++EL +G WT+DYKD L+ L+
Sbjct: 863 TGSIVQNDNGTFTCKG-VAKVSGKSVVVSELPIGTWTSDYKDFLEGLV 909
>gi|402589485|gb|EJW83417.1| hypothetical protein WUBG_05670 [Wuchereria bancrofti]
Length = 374
Score = 397 bits (1021), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/322 (60%), Positives = 240/322 (74%), Gaps = 27/322 (8%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITET-MWLMNRETNHMERREITYVPGLYKI 87
++S+EKIYQKKSQLEHILLRPDTYIGSVE T MW+ + ET+ + +REI+YVPGLYKI
Sbjct: 73 RLSIEKIYQKKSQLEHILLRPDTYIGSVEYTDRTPMWVYDTETDRIVQREISYVPGLYKI 132
Query: 88 FDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGH 147
FDEILVNA DNKQRDPKMN IK+ +N+E N IS++NNG+GIPVV HK EK++VP +IF
Sbjct: 133 FDEILVNAADNKQRDPKMNLIKVNINKEKNEISIYNNGRGIPVVLHKIEKLYVPELIF-- 190
Query: 148 LLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVV 207
G LLTSSNY+D E KVTGGRNGYGAKLCNIFS +F +
Sbjct: 191 -----------------------GTLLTSSNYDDSERKVTGGRNGYGAKLCNIFSKEFTL 227
Query: 208 ETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLI 267
ETS SEY K FKQ W +NMSK P+I + S++DFT++TF PDL KFKMT LD D+V L+
Sbjct: 228 ETSASEYGKVFKQTWVNNMSKDGEPKITTSSREDFTRVTFRPDLAKFKMTELDDDIVALM 287
Query: 268 TRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQ-DEDGDPVKIIYENVNPRWEV 326
RRAYD A ST+ VKVFLN +++PV+ F+ YV+ Y D +G+ K++YE+V+ RWEV
Sbjct: 288 CRRAYDIAGSTRGVKVFLNNKQIPVQGFKQYVEQYVKHNVDSNGEAYKVVYESVSSRWEV 347
Query: 327 AIAPSDRGFQQVSFVNSIATTK 348
A+ SD+GFQQVSF NSIATTK
Sbjct: 348 ALTVSDKGFQQVSFTNSIATTK 369
>gi|448930042|gb|AGE53608.1| DNA topoisomerase II [Acanthocystis turfacea Chlorella virus
GM0701.1]
Length = 560
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 239/641 (37%), Positives = 350/641 (54%), Gaps = 130/641 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K SQ +HIL R DTY+GSV ++ + + ++ ++Y P KIFDEIL N+
Sbjct: 5 YVKLSQRDHILHRADTYVGSVAKEAREEYVYTGDA--IVKKSVSYSPAFLKIFDEILTNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D R M +K+T+ + + ++++N+G IPV +H++
Sbjct: 63 ADCFNRGAPMTTLKVTI--DADHVTIFNDGCSIPVEKHEE-------------------- 100
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
VP +IFGHLLT N++D +++ GRNGYG+KL NIFS KF VE +K
Sbjct: 101 ------GCYVPELIFGHLLTGENFDDTQERTGAGRNGYGSKLTNIFSKKFDVEIYDGVHK 154
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
+ Q W DNM+ + P++ SK TF PD +F M S+DKD ++ RR YD A
Sbjct: 155 --YIQSWSDNMTNASKPKVTKSSKPGSITTTFYPDFERFGMDSIDKDTRSVLVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A VK+FL+G++L VK +DY ++YT+ K ++E+V+ W++ + PSD F
Sbjct: 213 AVLTKVKIFLDGKRLDVKGAKDYFEMYTE--------AKPVFESVDG-WDIGVCPSDE-F 262
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
+ VSFVN+ ++T+GG HVD + + + K + E KK
Sbjct: 263 RSVSFVNA-SSTRGGTHVDLIANVVTKAVAEAALKKK----------------------- 298
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ--------- 446
+ +KP VKN +++F+N +VNP+F SQTK+ +T +
Sbjct: 299 ---------------VTVKPAVVKNKLFVFVNARVVNPSFSSQTKDILTSKNVKCSPSAA 343
Query: 447 -----------------------------KGSFGS-----TCVPKLEDANDAGTKNSIDC 472
K + G+ T + KL DA AGTK+S C
Sbjct: 344 FLKKAVSAVLDDVIAETNVRESLVEMKNMKKTDGAKKVRLTGIKKLTDAAWAGTKHSGMC 403
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA +GL VVGR++YG+FPLRGKLLNVR+A+ I NAEI + +ILG
Sbjct: 404 TLILTEGDSAATLATAGLAVVGRERYGIFPLRGKLLNVRDASVSSITNNAEITAIKQILG 463
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
L+ TT +D +LRYG +M+MTD D DGSHI GL++NF H +P+LL +P FL++F
Sbjct: 464 LRNG---TTYKDASSLRYGSVMLMTDADVDGSHIAGLVLNFFHAQFPSLLEIPGFLKKFT 520
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYKV 632
TPI+ A + ++ FYSLP+FE+WK+ T+ + +KY KV
Sbjct: 521 TPIVIAKRGKDMKEFYSLPDFEDWKK--TSGDKWSVKYLKV 559
>gi|448933153|gb|AGE56710.1| DNA topoisomerase II [Acanthocystis turfacea Chlorella virus
NE-JV-2]
Length = 1058
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 245/640 (38%), Positives = 354/640 (55%), Gaps = 128/640 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K SQ +H+L RPDTY+GSV ++ + + ++ ++Y P KIFDEIL N+
Sbjct: 5 YVKLSQRDHVLQRPDTYVGSVAKEAREEYVYTGDA--IVKKSVSYSPAFLKIFDEILTNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D R M +K+T+ +T+ ++++N+G IPV +H++
Sbjct: 63 ADCFNRGAPMTTLKVTI--DTDHVTIYNDGCSIPVEKHEE-------------------- 100
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
VP +IFGHLLT N++D +++ GRNGYG+KL NIFS KF VE +
Sbjct: 101 ------GCYVPELIFGHLLTGENFDDAQERTGAGRNGYGSKLTNIFSKKFDVE--IYDGT 152
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
+ + Q W DNM+ + P++ SK TF PD +F M+S+D+D ++ RR YD A
Sbjct: 153 RKYLQTWSDNMTNASKPKVTKSSKPGSITTTFYPDFERFSMSSIDEDTRSVLVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A VK+FL+G++L VK +DY ++YTD VK ++E+V+ W++ + PSD F
Sbjct: 213 AVLTKVKIFLDGKRLDVKGAKDYFEMYTD--------VKPVFESVD-EWDIGVCPSDE-F 262
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
+ VSFVN+ ++T+GG HVD + +A+ K + E KK + ++ NKL
Sbjct: 263 RSVSFVNA-SSTRGGTHVDLIANAVAKAVAEAALKKKVTVKPAVV-----------KNKL 310
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ--------- 446
+IF+N +VNP+F SQTK+ +T +
Sbjct: 311 ---------------------------FIFVNARVVNPSFSSQTKDILTSKNVKCSPSAA 343
Query: 447 -----------------------------KGSFGS-----TCVPKLEDANDAGTKNSIDC 472
K + G+ T + KL DA AGTK+S C
Sbjct: 344 FLKKAVSAVLDDVIAETNVRESLVEMKNLKKTDGAKKVRLTGIKKLTDAAWAGTKHSGLC 403
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA +GL VVGRD+YG+FPLRGKLLNVR+A+ I NAEI + +ILG
Sbjct: 404 TLILTEGDSAATLATAGLAVVGRDRYGIFPLRGKLLNVRDASVSSITNNAEITAIKQILG 463
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
L+ TT +D +LRYG +MIM+DQD DGSHI GL++NF H +P+LL +P FL+ F+
Sbjct: 464 LRNG---TTYKDASSLRYGSVMIMSDQDVDGSHIAGLVLNFFHAQFPSLLEIPGFLKRFV 520
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A K + + FYS+P+FEEWK T + T+K KYYK
Sbjct: 521 TPIVVAKKGTKMVEFYSIPDFEEWKAATPDVSTWKTKYYK 560
Score = 127 bits (318), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 138/291 (47%), Gaps = 48/291 (16%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE+Y+P +P +LVNGA GIGTG+ T IP++NP++IVDN+KR+I G+ M PWYKN
Sbjct: 768 KIEPEYYVPTVPFLLVNGANGIGTGFSTNIPSYNPKDIVDNVKRLINGKAMTEMTPWYKN 827
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHG---AEKDEV 775
FKGEI F +G + + + ++EL VG WT +YK+ L+TL+ A+ E
Sbjct: 828 FKGEIKETSPGVFTCSG-VYDIKGKTVTVSELPVGTWTNEYKEHLETLIEKKIVADFREK 886
Query: 776 HPGPG---RKSHPRPIAPKSYKIDD-------------------DSEEEEIEEVF----- 808
H S + PK K++ DS + I + F
Sbjct: 887 HDETNVHFEISFTNDVDPKILKLESTIRTTNMHAFDPAGKIKKYDSPLDIITDWFSTRKE 946
Query: 809 ----HDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQE-EEDPDKD------------ 851
+L K K + + + + +D T+ EED KD
Sbjct: 947 FYIKRKEDLLKDLKARVLVAQNKSRFITSVNDGTLIITRRAEEDVIKDLGKLKFDKVDKS 1006
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALR 902
+DYLL M SLT ER +L + +L +L+ +W D+DA++
Sbjct: 1007 FDYLLSMKISSLTKERAEKLQAEATALEEDLVVLQNTTTEQMWVSDIDAIK 1057
>gi|302826295|ref|XP_002994651.1| hypothetical protein SELMODRAFT_138946 [Selaginella moellendorffii]
gi|300137231|gb|EFJ04283.1| hypothetical protein SELMODRAFT_138946 [Selaginella moellendorffii]
Length = 980
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 232/467 (49%), Positives = 285/467 (61%), Gaps = 95/467 (20%)
Query: 218 FKQVWKDNMSKVTSPEIKS-GSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
F QV+ + MS + P I S S +++TK+TF PDL KF MT L++D+V L+++R D A
Sbjct: 2 FDQVFSNIMSAKSEPAISSCKSNENWTKVTFKPDLAKFHMTYLEEDVVALMSKRVLDIAG 61
Query: 277 ST-KDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVAIAPSDRG 334
+ VKV LNG+KLPVK F DYV LY Q + + IYE N RWEV ++ SD
Sbjct: 62 CLGRTVKVELNGQKLPVKTFSDYVGLYLASAQKGKEETLPRIYERANDRWEVCVSLSDGQ 121
Query: 335 FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNK 394
FQQVSFVNSIAT +GG HV V + IV I E+V KKNK+
Sbjct: 122 FQQVSFVNSIATIRGGTHVQHVSEQIVSHIQEIVNKKNKN-------------------- 161
Query: 395 LQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC 454
+K FQ++NH+W+F+N LI NP FDSQTKE +T ++ SFGS C
Sbjct: 162 ----------------ANVKGFQIRNHLWVFVNSLIDNPAFDSQTKETLTTRQTSFGSKC 205
Query: 455 --------------------------------------------VPKLEDANDAGTKNSI 470
+ KL+DANDAG KNS
Sbjct: 206 ELSPEFLKKVSKCGVVDNVLSWADFKQSKELKKNDGAKRQRLTGIAKLDDANDAGGKNSE 265
Query: 471 DCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKI 530
CTLILTEGDSAK+LA+SG+ VVGR+ YGVFPLRGKLLNVREATHKQI++NAEI ++ +I
Sbjct: 266 ACTLILTEGDSAKALAMSGISVVGRNHYGVFPLRGKLLNVREATHKQIMDNAEITSIKQI 325
Query: 531 LGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEE 589
LGLQ K Y E+ K+LRYG LMIMTDQD DGSHIKGLIINFIH WP+LL++P FL E
Sbjct: 326 LGLQQGKGY---ENTKSLRYGHLMIMTDQDHDGSHIKGLIINFIHTFWPSLLKVPGFLVE 382
Query: 590 FITPIIKAT-KAREELSFYSLPEFEEWKE----ETTNWHTYKIKYYK 631
FITPI+KAT K + LSFY++PE+E WKE ET W IKYYK
Sbjct: 383 FITPIVKATHKNGKVLSFYTMPEYESWKESLRGETKGW---SIKYYK 426
Score = 128 bits (321), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 77/117 (65%), Gaps = 4/117 (3%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY PI+PMVLVNG+EGIGTGW T +PN+NPR+IV N+K ++R E PM PWYK F
Sbjct: 636 IEPFWYAPILPMVLVNGSEGIGTGWSTFVPNYNPRDIVTNLKHLLRDEPLEPMDPWYKGF 695
Query: 720 KGEIDYCGDSR----FVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
KG I + V G + +++ + + EL + KWT DYK+ L+ LL G EK
Sbjct: 696 KGTIVKSASKESGVSYTVTGIVEQVNETTIRVLELPIRKWTQDYKEFLEALLCGTEK 752
Score = 47.4 bits (111), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 830 AAEGEDDEAGSQTQEEEDPDK-----DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNI 884
+G D EA +EE +K DY+YLL M +LT+E+ +L +RD ++
Sbjct: 902 GGDGSDVEA----DDEEKLNKGVRAGDYEYLLSMPIGTLTLEKVQQLCNERDKLEGDVEE 957
Query: 885 LKKKAPTDLWSDDLDALREK 904
LKK P DLW DLD E+
Sbjct: 958 LKKCTPKDLWEKDLDNFLEQ 977
>gi|301605654|ref|XP_002932456.1| PREDICTED: DNA topoisomerase 2-beta [Xenopus (Silurana) tropicalis]
Length = 1557
Score = 389 bits (999), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/333 (57%), Positives = 226/333 (67%), Gaps = 80/333 (24%)
Query: 344 IATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLID 403
I + GGRHVD VVD IV ++IEVVKKKNK
Sbjct: 239 IKSYCGGRHVDYVVDQIVSKLIEVVKKKNK------------------------------ 268
Query: 404 IGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC--------- 454
G+++KPFQVKNH+W+F+NCLI NPTFDSQTKENMTLQ FGS C
Sbjct: 269 -----AGVSVKPFQVKNHVWVFVNCLIENPTFDSQTKENMTLQPKGFGSKCQLSEKFSKA 323
Query: 455 ------------------------------------VPKLEDANDAGTKNSIDCTLILTE 478
+PKL+DANDAG K+S+DCTLILTE
Sbjct: 324 ASNCGIVESILNWVKFKAQTQLNKKCSSVKHSKIKGIPKLDDANDAGGKHSLDCTLILTE 383
Query: 479 GDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKK 538
GDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HKQI+ENAEINN++KI+GLQY K
Sbjct: 384 GDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKS 443
Query: 539 YTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKAT 598
Y E +KTLRYG++MIMTDQDQDGSHIKGL+INF HHNWP+LL+ FLEEFITPI+KAT
Sbjct: 444 YDDNESLKTLRYGKIMIMTDQDQDGSHIKGLLINFFHHNWPSLLKHSFLEEFITPIVKAT 503
Query: 599 KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
K ++ELSFYS+PEFEEWK++T N +KIKYYK
Sbjct: 504 KNKQELSFYSIPEFEEWKKQTENQKLWKIKYYK 536
Score = 271 bits (694), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 130/203 (64%), Positives = 152/203 (74%), Gaps = 26/203 (12%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
S K + KMSVE++YQKK+QLEHILLRPDTYIGSVE +T++MW+ + + M R+IT
Sbjct: 36 SNNKNDSSKKMSVERVYQKKTQLEHILLRPDTYIGSVETVTQSMWVYDEDVG-MNCRDIT 94
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
YVPGLYKIFDEILVNA DNKQRD MNCIKI+++ ++N IS+WNNGKGIPVVEHK EKM+
Sbjct: 95 YVPGLYKIFDEILVNAADNKQRDKNMNCIKISIDPDSNIISIWNNGKGIPVVEHKVEKMY 154
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCN 199
VP +IFG LLTSSNY+D EE KVTGGRNGYGAKLCN
Sbjct: 155 VPALIFGQLLTSSNYDD-------------------------EEKKVTGGRNGYGAKLCN 189
Query: 200 IFSSKFVVETSCSEYKKSFKQVW 222
IFS+KF VET+C EYK SFKQVW
Sbjct: 190 IFSTKFTVETACKEYKHSFKQVW 212
Score = 152 bits (383), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIP+VLVNGAEGIGTGW K+PN++ REIV+N+KRM+ G DP P+ P YKN
Sbjct: 757 RVEPEWYIPIIPLVLVNGAEGIGTGWACKLPNYDTREIVNNVKRMLDGLDPYPLLPSYKN 816
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ ++GEI +LD + +EITEL V WT YK+ L+ +L+G EK
Sbjct: 817 FKGTIQELGQNQYAMSGEIYVLDRNTIEITELPVRTWTQVYKEQVLEPMLNGTEK 871
Score = 62.8 bits (151), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 40/53 (75%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
D++Y+L M+ WSL+ E+ +EL+++RD K ELN LK+K+P DLW +DL A E
Sbjct: 1043 DFNYILNMSLWSLSKEKVDELVRQRDIKSKELNDLKRKSPPDLWKEDLAAFVE 1095
>gi|183987592|gb|ACC65786.1| topoisomerase II [Pleurotus flabellatus]
Length = 701
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 210/473 (44%), Positives = 300/473 (63%), Gaps = 44/473 (9%)
Query: 197 LCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFK 255
L NI+S +F +ET+ +K + Q W NM++V +I K+G +++TK+TF PDL +F
Sbjct: 1 LANIYSHEFTIETADKTNEKKYSQTWTKNMTQVGKAKITKNGRGEEWTKVTFKPDLARFG 60
Query: 256 MTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGD---- 311
MT +D D L+ +R YD A + KDVKV+LN E+L VKNF+ YV++Y D D
Sbjct: 61 MTHIDPDTAGLLRKRVYDMAGTVKDVKVYLNDERLKVKNFKQYVEMYLDSAAADAKENSG 120
Query: 312 -----PVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIE 366
IIYE ++PRWEV A SD FQQVSF NSI+T KGG HV+ + D + K +I
Sbjct: 121 GAAQAKASIIYEQISPRWEVGFATSDGTFQQVSFANSISTIKGGTHVNYISDQLAKNLIA 180
Query: 367 VVKKKNKDLGCTI--------IMLFGNK------FNNVKNNKLQMAK-------TLIDIG 405
+ +KNK G T+ + +F N F++ L + TL +
Sbjct: 181 AITRKNK--GATVKPAQIKNHMWIFVNALIENPTFDSQTKETLTLPASKFGSRPTLSEEF 238
Query: 406 VRLGGMALKPFQVKNHIWIFINCLIVNPTFD-SQTKENMTLQKGSFGS-----TCVPKLE 459
++ G + + + ++ ++ I++ + ++ K + ++K GS T + KL
Sbjct: 239 MKKGALPIVLVVLSSYRFLVQKSSIIDQVLNWAKFKADQQIKKTD-GSKRTRLTGMAKLS 297
Query: 460 DANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQIL 519
DAN+AGTK++ CTLILTEGDSAKSLAV+GL VVGRD +GVFPLRGKLLNVREA H QI+
Sbjct: 298 DANNAGTKHAEKCTLILTEGDSAKSLAVAGLAVVGRDNFGVFPLRGKLLNVREARHDQIM 357
Query: 520 ENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWP 579
+N EI N+ KI+GLQ++K+Y+ V +LRYGRLMIMTDQD DGSHIKGL+INF+ H +P
Sbjct: 358 KNEEIQNIKKIMGLQHNKEYSNVS---SLRYGRLMIMTDQDHDGSHIKGLLINFLDHFYP 414
Query: 580 TLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+LL++P FL EF+TPI++ TK + +F+++PE+E+W E T + + KYYK
Sbjct: 415 SLLKIPEFLVEFVTPIVRVTKGNQRKNFFTIPEYEQWIESTPDSKKWTAKYYK 467
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/25 (80%), Positives = 25/25 (100%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGW 684
+EPEWY+PI+P+VLVNGA+GIGTGW
Sbjct: 677 VEPEWYMPILPLVLVNGADGIGTGW 701
>gi|448925985|gb|AGE49563.1| DNA topoisomerase II [Acanthocystis turfacea Chlorella virus
Can0610SP]
Length = 1058
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 242/640 (37%), Positives = 352/640 (55%), Gaps = 128/640 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K SQ +H+L RPDTY+GSV ++ + + ++ ++Y P KIFDEIL N+
Sbjct: 5 YIKLSQRDHVLQRPDTYVGSVAKEAREEYVYTGDA--IVKKSVSYSPAFLKIFDEILTNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D R M +K+T+ + + ++++N+G IPV +H++
Sbjct: 63 ADCVNRGAPMTTLKVTI--DADHVTIYNDGCSIPVEKHEE-------------------- 100
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
VP +IFGHLLT N++D +++ GRNGYG+KL NIFS KF VE +
Sbjct: 101 ------GCYVPELIFGHLLTGENFDDAQERTGAGRNGYGSKLTNIFSKKFDVE--IYDGT 152
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
+ + Q W DNM+ + P++ SK TF PD +F M S+D+D ++ RR YD A
Sbjct: 153 RKYLQTWSDNMTNASKPKVTKSSKPGSITTTFYPDFERFSMDSIDEDTRSVLVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A VK+FL+G++L VK +DY ++YT+ VK ++E+V+ W++ + PSD F
Sbjct: 213 AVLTKVKIFLDGKRLDVKGAKDYFEMYTE--------VKPVFESVDG-WDIGVCPSDE-F 262
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
+ VSFVN+ ++T+GG HVD + +A+ K + E KK + ++ NKL
Sbjct: 263 RSVSFVNA-SSTRGGTHVDLIANAVAKAVAEAALKKKVTVKPAVV-----------KNKL 310
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ--------- 446
+IF+N +VNP+F SQTK+ +T +
Sbjct: 311 ---------------------------FIFVNARVVNPSFSSQTKDILTSKNVKCSPSVA 343
Query: 447 -----------------------------KGSFGS-----TCVPKLEDANDAGTKNSIDC 472
K + G+ T + KL DA AGTK+S C
Sbjct: 344 FLKKAVSAVLDDVIAETNVRESLVEMKNLKKTDGAKKVRLTGIKKLTDAAWAGTKHSGLC 403
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA +GL VVGRD+YG+FPLRGKLLNVR+A+ I NAEI + +ILG
Sbjct: 404 TLILTEGDSAATLATAGLAVVGRDRYGIFPLRGKLLNVRDASVSSITNNAEITAIKQILG 463
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
L+ TT +D +LRYG +MIM+DQD DGSHI GL++NF H +P+LL +P FL+ F+
Sbjct: 464 LRNG---TTYKDASSLRYGSVMIMSDQDVDGSHIAGLVLNFFHAQFPSLLEIPGFLKRFV 520
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A K + + FYS+P+FEEWK T + T+K KY+K
Sbjct: 521 TPIVVAKKGTKMVEFYSIPDFEEWKAATPDVSTWKTKYFK 560
Score = 129 bits (324), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 138/291 (47%), Gaps = 48/291 (16%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPE+Y+P IP +LVNGA GIGTG+ T IP++NP+EIV+N+KR+I G+ M PWYKN
Sbjct: 768 RIEPEYYVPTIPFLLVNGANGIGTGFSTNIPSYNPKEIVNNVKRLINGKPMTEMTPWYKN 827
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLH---GAEKDEV 775
FKG+I F +G I + ++EL VG WT +YK+ +++L+ A+ E
Sbjct: 828 FKGDIKETSPGVFTCHGVYEI-KGKTVTVSELPVGTWTNEYKEYIESLIEKKIAADFREK 886
Query: 776 H--------------PGPG--------RKSHPRPIAPKSYKIDDDSEEEEIEEVF----- 808
H P P R ++ P+ DS + I + F
Sbjct: 887 HDETNVLFEIDFIGVPDPKILKLDSTIRTTNMHAFDPEGKIKKYDSPLDIITDWFATRKE 946
Query: 809 ----HDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQE-EEDPDKD------------ 851
+L K K + + + + +D T+ EED KD
Sbjct: 947 FYIKRKEDLLKDLKARVLVAKNKSRFITSVNDGTLIITRRAEEDVIKDLNKMKFDKVDGS 1006
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALR 902
++YLLGM SLT ER +L + EL +LK +W D+DA++
Sbjct: 1007 FEYLLGMKISSLTKERAEKLQAEAVTLEEELVVLKNTTAEQMWVSDIDAIK 1057
>gi|448932485|gb|AGE56044.1| DNA topoisomerase II [Acanthocystis turfacea Chlorella virus
MO0605SPH]
Length = 1058
Score = 385 bits (990), Expect = e-103, Method: Compositional matrix adjust.
Identities = 241/640 (37%), Positives = 351/640 (54%), Gaps = 128/640 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K SQ +H+L RPDTY+GSV ++ + + ++ ++Y P KIFDEIL N+
Sbjct: 5 YIKLSQRDHVLQRPDTYVGSVAKEAREEYVYTGDA--IVKKSVSYSPAFLKIFDEILTNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D R M +K+T+ +T+ ++++N+G IPV +H++
Sbjct: 63 ADCFNRGAPMTTLKVTI--DTDHVTIYNDGCSIPVEKHEE-------------------- 100
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
VP +IFGHLLT N++D +++ GRNGYG+KL NIFS KF VE +
Sbjct: 101 ------GCYVPELIFGHLLTGENFDDAQERTGAGRNGYGSKLTNIFSKKFDVE--IYDGT 152
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
+ + Q W DNM+ + P++ SK TF PD +F M S+D+D ++ RR YD A
Sbjct: 153 RKYLQTWSDNMTNASKPKVTKSSKPGSITTTFYPDFERFSMVSIDEDTRSVLVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A VK+FL+G++L VK +DY ++YT+ K ++E+V+ W++ + PSD F
Sbjct: 213 AVLTKVKIFLDGKRLDVKGAKDYFEMYTE--------AKPVFESVDG-WDIGVCPSDE-F 262
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
+ VSFVN+ ++T+GG HVD + +A+ K + E KK + ++ NKL
Sbjct: 263 RSVSFVNA-SSTRGGTHVDLIANAVAKAVAEAALKKKVTVKPAVV-----------KNKL 310
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ--------- 446
+IF+N +VNP+F SQTK+ +T +
Sbjct: 311 ---------------------------FIFVNARVVNPSFSSQTKDILTSKNVKCSPSVA 343
Query: 447 -----------------------------KGSFGS-----TCVPKLEDANDAGTKNSIDC 472
K + G+ T + KL DA AGTK+S C
Sbjct: 344 FLKKAVSAVLDDVIAETNVRESLVEMKNLKKTDGAKKVRLTGIKKLTDAAWAGTKHSGMC 403
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA +GL VVGR++YG+FPLRGKLLNVR+A+ I NAEI + +ILG
Sbjct: 404 TLILTEGDSAATLATAGLAVVGRERYGIFPLRGKLLNVRDASVSSITNNAEITAIKQILG 463
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
L+ Y +D +LRYG +MIM+DQD DGSHI GL++NF H +P+LL +P FL+ F+
Sbjct: 464 LRNGVNY---KDASSLRYGSVMIMSDQDVDGSHIAGLVLNFFHAQFPSLLEIPGFLKRFV 520
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A K + + FYS+P+FEEWK T + T+K KYYK
Sbjct: 521 TPIVVAKKGTKMVEFYSIPDFEEWKAATPDVSTWKTKYYK 560
Score = 121 bits (304), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE+Y+P IP +LVNGA GIGTG+ T IP++NP++IVDN+KR+I E LPM PWY+
Sbjct: 768 KIEPEYYVPTIPFLLVNGANGIGTGFSTNIPSYNPKDIVDNVKRLINNETMLPMTPWYRG 827
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
FKG I F +G + + + ++EL VG WT +YK+ L+TL+
Sbjct: 828 FKGTIVEASPGVFTCSG-VYDIKGKTVTVSELPVGTWTNEYKEHLETLI 875
>gi|155371498|ref|YP_001427032.1| hypothetical protein ATCV1_Z551L [Acanthocystis turfacea Chlorella
virus 1]
gi|155124818|gb|ABT16685.1| hypothetical protein ATCV1_Z551L [Acanthocystis turfacea Chlorella
virus 1]
Length = 1058
Score = 384 bits (986), Expect = e-103, Method: Compositional matrix adjust.
Identities = 240/640 (37%), Positives = 350/640 (54%), Gaps = 128/640 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K SQ +H+L RPDTY+GSV ++ + + ++ ++Y P KIFDEIL N+
Sbjct: 5 YIKLSQRDHVLQRPDTYVGSVAKEAREEYVYTGDA--IVKKSVSYSPAFLKIFDEILTNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D R M +K+T+ + + ++++N+G IPV +H++
Sbjct: 63 ADCFNRGAPMTTLKVTI--DADHVTIYNDGCSIPVEKHEE-------------------- 100
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
VP +IFGHLLT N++D +++ GRNGYG+KL NIFS KF VE +
Sbjct: 101 ------GCYVPELIFGHLLTGENFDDAQERTGAGRNGYGSKLTNIFSKKFDVE--IYDGT 152
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
+ + Q W DNM+ + P++ SK TF PD +F M S+D+D ++ RR YD A
Sbjct: 153 RKYLQTWSDNMTNASKPKVTKSSKPGSITTTFYPDFERFGMDSIDEDTRSVLVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A VK+FL+G++L VK +DY ++YT+ K ++E+V+ W++ + PSD F
Sbjct: 213 AVLTKVKIFLDGKRLDVKGAKDYFEMYTE--------AKPVFESVDG-WDIGVCPSDE-F 262
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
+ VSFVN+ ++T+GG HVD + +A+ K + E KK + ++ NKL
Sbjct: 263 RSVSFVNA-SSTRGGTHVDLIANAVAKAVAEAALKKKVTVKPAVV-----------KNKL 310
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ--------- 446
+IF+N +VNP+F SQTK+ +T +
Sbjct: 311 ---------------------------FIFVNARVVNPSFSSQTKDILTSKNVKCSPSAA 343
Query: 447 -----------------------------KGSFGS-----TCVPKLEDANDAGTKNSIDC 472
K + G+ T + KL DA AGTK+S C
Sbjct: 344 FLKKAVSAVLDDVIAETNVRESLVEMKNLKKTDGAKKVRLTGIKKLTDAAWAGTKHSGMC 403
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA +GL VVGRD+YG+FPLRGKLLNVR+A+ I NAEI + +ILG
Sbjct: 404 TLILTEGDSAATLATAGLAVVGRDRYGIFPLRGKLLNVRDASVSSITNNAEITAIKQILG 463
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
L+ Y +D +LRYG ++IM DQD DGSHI GL++NF H +P+LL +P FL+ F+
Sbjct: 464 LRNGVNY---KDASSLRYGSVIIMADQDVDGSHIAGLVLNFFHAQFPSLLEIPGFLKRFV 520
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A K + + FYS+P+FEEWK T++ T+K KYYK
Sbjct: 521 TPIVVAKKGTKMVEFYSIPDFEEWKAATSDVSTWKTKYYK 560
Score = 124 bits (311), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPE+Y+P IP +LVNG+ GIGTG+ T IP +NP++IVDN+KR+I E LPM PWY+
Sbjct: 768 RIEPEYYVPTIPFLLVNGSSGIGTGFSTNIPAYNPKDIVDNVKRLINNETMLPMTPWYRG 827
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
FKG+I F +G + + + ++EL VG WT DYK+ L+TL+
Sbjct: 828 FKGDIKETSPGVFTCSG-VYDIKGKTVTVSELPVGTWTNDYKEHLETLI 875
Score = 42.4 bits (98), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 849 DKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALR 902
DK +DYLLGM SLT ER +L + EL IL+ A +W +D++A++
Sbjct: 1004 DKSFDYLLGMKISSLTKERAEKLQAEAAALEKELVILENTATEAMWVNDIEAIK 1057
>gi|448933486|gb|AGE57042.1| DNA topoisomerase II [Acanthocystis turfacea Chlorella virus
NE-JV-3]
Length = 1058
Score = 384 bits (986), Expect = e-103, Method: Compositional matrix adjust.
Identities = 240/640 (37%), Positives = 350/640 (54%), Gaps = 128/640 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K SQ +H+L RPDTY+GSV ++ + + ++ ++Y P KIFDEIL N+
Sbjct: 5 YIKLSQRDHVLQRPDTYVGSVAKEAREEYVYTGDA--IVKKSVSYSPAFLKIFDEILTNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D R M +K+T+ + + ++++N+G IPV +H++
Sbjct: 63 ADCVNRGAPMTTLKVTI--DADHVTIFNDGCSIPVEKHEE-------------------- 100
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
VP +IFGHLLT N++D +++ GRNGYG+KL NIFS KF VE +
Sbjct: 101 ------GCYVPELIFGHLLTGENFDDAQERTGAGRNGYGSKLTNIFSKKFDVE--IYDGT 152
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
+ + Q W DNM+ + P++ SK TF PD +F M S+D+D ++ RR YD A
Sbjct: 153 RKYLQTWSDNMTNASKPKVTKSSKPGSITTTFYPDFERFSMVSIDEDTRSVLVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A VK+FL+G++L VK +DY ++YT+ K ++E+V+ W++ + PSD F
Sbjct: 213 AVLTKVKIFLDGKRLDVKGAKDYFEMYTE--------AKPVFESVDG-WDIGVCPSDE-F 262
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
+ VSFVN+ ++T+GG HVD + +A+ K + E KK + ++ NKL
Sbjct: 263 RSVSFVNA-SSTRGGTHVDLIANAVAKAVAEAALKKKVTVKPAVV-----------KNKL 310
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ--------- 446
+IF+N +VNP+F SQTK+ +T +
Sbjct: 311 ---------------------------FIFVNARVVNPSFSSQTKDILTSKNVKCSPSVA 343
Query: 447 -----------------------------KGSFGS-----TCVPKLEDANDAGTKNSIDC 472
K + G+ T + KL DA AGTK+S C
Sbjct: 344 FLKKAVSAVLDDVIAETNVRESLVEMKNLKKTDGAKKVRLTGIKKLTDAAWAGTKHSGMC 403
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA +GL VVGR++YG+FPLRGKLLNVR+A+ I NAEI + +ILG
Sbjct: 404 TLILTEGDSAATLATAGLAVVGRERYGIFPLRGKLLNVRDASVSSITNNAEITAIKQILG 463
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
L+ Y +D +LRYG +MIM+DQD DGSHI GL++NF H +P+LL +P FL+ F+
Sbjct: 464 LRNGVNY---KDASSLRYGSVMIMSDQDVDGSHIAGLVLNFFHAQFPSLLEIPGFLKRFV 520
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A K + + FYS+P+FEEWK T + T+K KYYK
Sbjct: 521 TPIVVAKKGTKMVEFYSIPDFEEWKAATPDVSTWKTKYYK 560
Score = 126 bits (316), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 136/291 (46%), Gaps = 48/291 (16%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE+Y+P IP +LVNGA GIGTG+ T IP++NPREIVDN+KR+I G+ M PWY+
Sbjct: 768 KIEPEYYVPTIPFLLVNGANGIGTGFSTNIPSYNPREIVDNVKRLIDGKAMAEMTPWYRG 827
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLH---GAEKDEV 775
FKG I F +G I + ++EL VG WT +YK+ +++L+ A+ E
Sbjct: 828 FKGIIKEASPGVFTCHGVYEI-KGKTVTVSELPVGTWTNEYKEYIESLIEKKIAADFREK 886
Query: 776 H--------------PGPG--------RKSHPRPIAPKSYKIDDDSEEEEIEEVF----- 808
H P P R ++ P+ DS + I + F
Sbjct: 887 HDETNVLFEIDFIGVPDPKILKLDSTIRTTNMHAFDPEGKIKKYDSPLDIITDWFATRKE 946
Query: 809 ----HDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQE-EEDPDKD------------ 851
+L K K + + + + +D T+ EED KD
Sbjct: 947 FYIKRKEDLLKDLKARVLVAQNKSRFITSVNDGTLIITRRAEEDVIKDLNKMKFDKVDGS 1006
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALR 902
++YLLGM SLT ER +L + EL +LK +W D+DA++
Sbjct: 1007 FEYLLGMKISSLTKERAEKLQAEAVTLEEELVVLKNTTAEQMWVSDIDAIK 1057
>gi|357289588|gb|AET72901.1| DNA topoisomerase IIB [Phaeocystis globosa virus 12T]
gi|357292383|gb|AET73719.1| DNA topoisomerase IIB [Phaeocystis globosa virus 14T]
Length = 1153
Score = 382 bits (980), Expect = e-102, Method: Compositional matrix adjust.
Identities = 242/668 (36%), Positives = 346/668 (51%), Gaps = 137/668 (20%)
Query: 28 NKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKI 87
N + K YQKK+ +HIL PDTYIGSVE I E ++ + E N + + ITYVP +YK+
Sbjct: 4 NTQDLAKKYQKKTDKQHILDNPDTYIGSVENIDEDTYVFDSELNRIVEKHITYVPAVYKL 63
Query: 88 FDEILVNACDNKQR-------------DPKMNCIKITVNQETNTISVWNNGKGIPVVEHK 134
FDE +VN D+ R P N I +T+ E I+++N+G GI V H
Sbjct: 64 FDEGIVNCRDHTIRMRQLIESSPGEKNHPVTN-IDVTITDE-GIITLYNDGNGIDVSMHP 121
Query: 135 DEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYG 194
+ +++P +IF GHL TS+NY+ E K GG+NG+G
Sbjct: 122 EYGVWIPELIF-------------------------GHLRTSTNYDKNEKKTVGGKNGFG 156
Query: 195 AKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKF 254
KL I+S+ +ET + + + Q + DN++ + P+I +T ++F PD +
Sbjct: 157 FKLVLIWSTWGKIETVDHKTGQKYIQEFHDNLTTIDKPKITKCKTKPYTSVSFKPDYERL 216
Query: 255 KMTSLDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPV 313
K+ +D D L+ RR YD AA T K +KV N +++ VK+F +YV LY D
Sbjct: 217 KIAGIDMDFKSLLLRRIYDMAAVTDKSIKVKFNSQQINVKSFINYVDLYIG----DKSVT 272
Query: 314 KIIYENVNPRWE--VAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK 371
+ + E N RWE V IAP F Q+SFVN I T+KGG+HVD + + I+++I +K K
Sbjct: 273 ERVQEQPNERWEYAVCIAPKQE-FTQISFVNGIFTSKGGKHVDYITNQIIRKITAFIKTK 331
Query: 372 NKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIV 431
ID+ KP ++ + +FINC I
Sbjct: 332 KH----------------------------IDV---------KPAAIREQLMVFINCTIE 354
Query: 432 NPTFDSQTKENMTLQKGSFGSTC------------------------------------- 454
NP FDSQTK+ + +FGS+C
Sbjct: 355 NPAFDSQTKDCLNTAVSNFGSSCEVSDKFIEKLAKMGVMATACSITEVKENKAVKKTDGT 414
Query: 455 -------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKL 507
+PKL DAN AGT S +C +IL EGDSAKS +SGL R+ GV+P++GK+
Sbjct: 415 KVKNIRNIPKLVDANFAGTSKSAECVIILCEGDSAKSGIISGLTSEDRNYIGVYPMKGKM 474
Query: 508 LNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKT-LRYGRLMIMTDQDQDGSHI 566
NVR + +I N EI + +I+GL++ KKYT ED+KT LRYG+++ MTDQD DGSHI
Sbjct: 475 FNVRGESASKISVNKEIFEIKQIVGLEHGKKYT-AEDVKTKLRYGKILFMTDQDLDGSHI 533
Query: 567 KGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKE--ETTNWH 623
KGL IN I W +L+ +P F+ TPI+KATK +E + FY+ +FE WK+ + + W+
Sbjct: 534 KGLGINMIDSEWKSLIEIPEFIGYMNTPILKATKGKETVDFYNDGQFENWKKDNDASKWN 593
Query: 624 TYKIKYYK 631
IKYYK
Sbjct: 594 ---IKYYK 598
Score = 107 bits (267), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 80/115 (69%), Gaps = 2/115 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPL-PMKPWYKN 718
+EP +YIPIIPM+L+NG +GIGTG+ T I +HNP +I+ ++ M+ + L ++P+YKN
Sbjct: 805 VEPVYYIPIIPMILINGTKGIGTGFSTDIMSHNPIQIIQYLENMLTNQKELGTIEPYYKN 864
Query: 719 FKGEIDYCG-DSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
FKG I C + ++++ G+ ++D++++ I EL +G WT YK+ L+TL +K
Sbjct: 865 FKGTIIPCDKNHKYLIRGKYEMMDNNQIRIIELPIGTWTQTYKEFLETLFVSKDK 919
>gi|448925661|gb|AGE49240.1| DNA topoisomerase II [Acanthocystis turfacea Chlorella virus
Br0604L]
Length = 562
Score = 382 bits (980), Expect = e-102, Method: Compositional matrix adjust.
Identities = 241/641 (37%), Positives = 348/641 (54%), Gaps = 128/641 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K SQ +HIL R DTY+GSV ++ + + ++ ++Y P KIFDEIL N+
Sbjct: 5 YVKLSQRDHILHRSDTYVGSVAKEAREEYVYTGDA--IVKKSVSYSPAFLKIFDEILTNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D R M +K+T+ + + ++++N+G IPV +H++
Sbjct: 63 ADCFNRGAPMTTLKVTI--DADHVTIFNDGCSIPVEKHEE-------------------- 100
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
VP +IFGHLLT N++D +++ GRNGYG+KL NIFS KF VE +K
Sbjct: 101 ------GCYVPELIFGHLLTGENFDDTQERTGAGRNGYGSKLTNIFSKKFDVEIYDGTHK 154
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
+ Q W DNM+ + P++ SK TF PD +F M S+D+D ++ RR YD A
Sbjct: 155 --YIQSWSDNMTNASKPKVTKSSKPGSITTTFYPDFERFGMDSIDEDTRSVLVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A VK+FL+G++L VK +DY ++YTD K ++E + W++ + PSD F
Sbjct: 213 AVLTKVKIFLDGKRLDVKGAKDYFEMYTD--------AKPVFETADG-WDIGVCPSDE-F 262
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
+ VSFVN+ ++T+GG HVD + +A+ K + E KK + ++ NKL
Sbjct: 263 RSVSFVNA-SSTRGGTHVDLIANAVAKAVAEAALKKKVTVKPAVV-----------KNKL 310
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ--------- 446
++F+N +VNP+F SQTK+ +T +
Sbjct: 311 ---------------------------FVFVNARVVNPSFSSQTKDILTSKNVKCSPSAV 343
Query: 447 -----------------------------KGSFGS-----TCVPKLEDANDAGTKNSIDC 472
K + G+ T + KL DA AG+KNS C
Sbjct: 344 FLKKAVSAVLDDVVAETNVRESLVEMKNIKKTDGTKKVRLTGIKKLTDAAWAGSKNSGLC 403
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA +GL VVGR++YG+FPLRGKLLNVR+A+ I NAEI + +ILG
Sbjct: 404 TLILTEGDSAATLATAGLAVVGRERYGIFPLRGKLLNVRDASVSSITNNAEITAIKQILG 463
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
L+ Y +D +LRYG +MIM+DQD DGSHI GL++NF H +P+LL +P FL+ F+
Sbjct: 464 LRNGVNY---KDASSLRYGSVMIMSDQDVDGSHIAGLVLNFFHAQFPSLLEIPGFLKRFV 520
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYKV 632
TPI+ A K + + FYS+P+FEEWK T + T+K KYYKV
Sbjct: 521 TPIVVAKKGAKMVEFYSIPDFEEWKAATPDVSTWKTKYYKV 561
>gi|402593234|gb|EJW87161.1| DNA topoisomerase 2, partial [Wuchereria bancrofti]
Length = 1042
Score = 381 bits (978), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/328 (57%), Positives = 219/328 (66%), Gaps = 78/328 (23%)
Query: 349 GGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRL 408
GGRHVD VVD I ++I+V+KKK IG +
Sbjct: 1 GGRHVDYVVDQIASKLIDVIKKK--------------------------------IG-KS 27
Query: 409 GGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC-------------- 454
GG+ +KPFQ+KNH+WIF+N LI NPTFDSQTKE MTLQ SFGSTC
Sbjct: 28 GGINVKPFQIKNHMWIFVNALIENPTFDSQTKETMTLQSKSFGSTCELSEKFIQAAMKCG 87
Query: 455 -------------------------------VPKLEDANDAGTKNSIDCTLILTEGDSAK 483
VPKLEDANDAGTKNS CTLILTEGDSAK
Sbjct: 88 IVEAIMAWVRFKQQETLDKKCSSKKTSKLKGVPKLEDANDAGTKNSAQCTLILTEGDSAK 147
Query: 484 SLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVE 543
SLAVSGLGVVGRDKYGVFPLRGK+LNVRE HKQI+ENAE+N L+KI+GLQY KY E
Sbjct: 148 SLAVSGLGVVGRDKYGVFPLRGKMLNVREGNHKQIMENAEVNALLKIIGLQYRLKYDKDE 207
Query: 544 DMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREE 603
DMKTLRYG++M+M DQDQDGSHIKGL+INFIH+NWP L+R F+EEFITPI+KATK +EE
Sbjct: 208 DMKTLRYGKIMVMADQDQDGSHIKGLVINFIHYNWPALVRRNFVEEFITPIVKATKGKEE 267
Query: 604 LSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+SF+SLPE+ EW +T NW TY+IKYYK
Sbjct: 268 ISFFSLPEYREWLNDTENWKTYRIKYYK 295
Score = 152 bits (383), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 104/155 (67%), Gaps = 5/155 (3%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPEWY P+IP VLVNGAEGIGT W TK+P +NPREIVDN++ +I G++P P+ PWYK+
Sbjct: 516 KIEPEWYCPVIPTVLVNGAEGIGTAWSTKVPCYNPREIVDNMRALIDGKEPKPLIPWYKH 575
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEKDEVHP 777
F+G I+ D RFV NGE+A+++++ +EITEL + WT YK+T L ++ G +K
Sbjct: 576 FRGTIEQLDDQRFVCNGEVAVINNETIEITELPIRTWTQTYKETVLVPMMDGNDKQPAVI 635
Query: 778 GPGRKSHPRPIAPKSYKIDDD----SEEEEIEEVF 808
++ H K++ D S+EE + +VF
Sbjct: 636 TDFKEYHTDTTVKFVIKMNSDKLRASKEEGLHKVF 670
Score = 48.5 bits (114), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 841 QTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDA 900
Q++E DYDYL+GM L+ E K++LL++ + K+ EL L++ DLW++DL+
Sbjct: 804 QSKELASKLSDYDYLVGMAILKLSEEEKDKLLRESEAKLIELRSLEEMTWADLWNNDLNC 863
Query: 901 L 901
Sbjct: 864 F 864
>gi|448935941|gb|AGE59490.1| DNA topoisomerase II [Acanthocystis turfacea Chlorella virus
OR0704.3]
Length = 1056
Score = 379 bits (974), Expect = e-101, Method: Compositional matrix adjust.
Identities = 240/640 (37%), Positives = 351/640 (54%), Gaps = 130/640 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K SQ +H+L RPDTY+GSV ++ + + ++ ++Y P KIFDEIL N+
Sbjct: 5 YIKLSQRDHVLQRPDTYVGSVAKEAREEYVYTGDA--IVKKSVSYSPAFLKIFDEILTNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D R M +K+T+ +T+ ++++N+G IPV +H++
Sbjct: 63 ADCFNRGAPMTTLKVTI--DTDHVTIYNDGCSIPVEKHEE-------------------- 100
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
VP +IFGHLLT N++D +++ GRNGYG+KL NIFS KF VE +
Sbjct: 101 ------GCYVPELIFGHLLTGENFDDAQERTGAGRNGYGSKLTNIFSKKFDVE--IYDGT 152
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
+ + Q W DNM+ + P++ SK TF PD +F M S+D+D ++ RR YD A
Sbjct: 153 RKYLQTWSDNMTNASKPKVTKSSKPGGITTTFYPDFERFSMVSIDEDTRSVLVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A VK+FL+G++L VK +DY ++YTD VKI++E+V+ W++A+ PSD F
Sbjct: 213 AVLTKVKIFLDGKRLDVKGAKDYFEMYTD--------VKIVFESVDG-WDIAVCPSDE-F 262
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
+ VSFVN+ ++T+GG HVD + +A+ K + E KK + ++ NKL
Sbjct: 263 RSVSFVNA-SSTRGGTHVDLIANAVAKAVAEAALKKKVTVKPAVV-----------KNKL 310
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT----------- 444
++F+N +VNP+F SQTK+ +T
Sbjct: 311 ---------------------------FVFVNARVVNPSFSSQTKDILTSKNVKCSPSTA 343
Query: 445 -LQKGSFGS-------------------------------TCVPKLEDANDAGTKNSIDC 472
L+K T + KL DA AG+KNS C
Sbjct: 344 FLKKAVAAVLDDVIAETNVRESLVEMKNLKKTDGAKKVRLTGIKKLTDAAWAGSKNSGLC 403
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA +GL VVGR++YG+FPLRGKLLNVR+A+ I NAEI + +ILG
Sbjct: 404 TLILTEGDSAATLATAGLAVVGRERYGIFPLRGKLLNVRDASVSSITNNAEIVAIKQILG 463
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
L+ TT +D +LRYG +M+MTD D DGSHI GL++NF H +P+LL +P FL++F
Sbjct: 464 LRNG---TTYKDASSLRYGSVMLMTDADVDGSHIAGLVLNFFHAQFPSLLEIPGFLKKFT 520
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A + ++ FYSLP+FE+WK+ T+ + +KY K
Sbjct: 521 TPIVIAKRGKDMNEFYSLPDFEDWKK--TSGDKWSVKYLK 558
Score = 123 bits (309), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 77/109 (70%), Gaps = 1/109 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE+Y+P IP +LVNGA GIGTG+ T IP++NP+EI+DN+KR+I G+ +PM PWY+
Sbjct: 766 KIEPEYYVPTIPFLLVNGANGIGTGFSTNIPSYNPKEIIDNVKRLIDGKPMVPMTPWYRG 825
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
FKG I F +G +I + ++EL VG WT DYK+ L+TL+
Sbjct: 826 FKGTIVEASPGVFTCSGVYSI-KGKMVTVSELPVGTWTNDYKEHLETLI 873
>gi|448936620|gb|AGE60167.1| DNA topoisomerase II [Acanthocystis turfacea Chlorella virus
WI0606]
Length = 1056
Score = 377 bits (969), Expect = e-101, Method: Compositional matrix adjust.
Identities = 240/640 (37%), Positives = 351/640 (54%), Gaps = 130/640 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K SQ +H+L RPDTY+GSV ++ + + ++ ++Y P KIFDEIL N+
Sbjct: 5 YIKLSQRDHVLQRPDTYVGSVAKEAREEYVYTGDA--IVKKSVSYSPAFLKIFDEILTNS 62
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D R M +K+T+ +T+ ++++N+G IPV +H++
Sbjct: 63 ADCFNRGAPMTTLKVTI--DTDHVTIYNDGCSIPVEKHEE-------------------- 100
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
VP +IFGHLLT N++D +++ GRNGYG+KL NIFS KF VE +
Sbjct: 101 ------GCYVPELIFGHLLTGENFDDAQERTGAGRNGYGSKLTNIFSKKFDVE--IYDGT 152
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
+ + Q W DNM+ + P++ SK TF PD +F M S+D+D ++ RR YD A
Sbjct: 153 RKYLQTWSDNMTNASKPKVTKSSKPGSITTTFYPDFERFSMDSIDEDTRSVLVRRVYDMA 212
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
A VK+FL+G++L VK +DY ++YTD VKI++E+V+ W++ + PSD F
Sbjct: 213 AVLTKVKIFLDGKRLDVKGAKDYFEMYTD--------VKIVFESVDG-WDIGVCPSDE-F 262
Query: 336 QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395
+ VSFVN+ ++T+GG HVD + +A+ K + E KK + ++ NKL
Sbjct: 263 RSVSFVNA-SSTRGGTHVDLIANAVAKAVAEAALKKKVTVKPAVV-----------KNKL 310
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ--------- 446
+IF+N +VNP+F SQTK+ +T +
Sbjct: 311 ---------------------------FIFVNARVVNPSFSSQTKDILTSKNVKCSPSVA 343
Query: 447 -----------------------------KGSFGS-----TCVPKLEDANDAGTKNSIDC 472
K + G+ T V KL DA AG+KNS C
Sbjct: 344 FLKKAVSAVLDDVIAETNVRESLVEMKNLKKTDGAKKVRLTGVKKLTDAAWAGSKNSGLC 403
Query: 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532
TLILTEGDSA +LA +GL VVGR++YG+FPLRGKLLNVR+A+ I NAEI + +ILG
Sbjct: 404 TLILTEGDSAATLATAGLAVVGRERYGIFPLRGKLLNVRDASVSSITNNAEIVAIKQILG 463
Query: 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFI 591
L+ Y +D +LRYG +M+MTD D DGSHI GL++NF H +P+LL +P FL++F
Sbjct: 464 LRNGVNY---KDASSLRYGSVMLMTDADVDGSHIAGLVLNFFHAQFPSLLEIPGFLKKFT 520
Query: 592 TPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+ A + ++ FYSLP+FE+WK+ T+ + +KY K
Sbjct: 521 TPIVIAKRGKDMKEFYSLPDFEDWKK--TSGDKWSVKYLK 558
Score = 119 bits (298), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 77/109 (70%), Gaps = 1/109 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE+Y+P IPM+LVNGA GIGTG+ T IP++NP++IVDN+KR+I G+ M PWY+
Sbjct: 766 KIEPEYYVPTIPMILVNGANGIGTGFSTNIPSYNPKDIVDNVKRLINGKAMTEMTPWYRG 825
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
FKG+I F +G + + + ++EL VG WT++YK+ L+ L+
Sbjct: 826 FKGDIKETSPGVFTCSG-VYDIKGKTVTVSELPVGTWTSEYKEQLEILI 873
>gi|322510575|gb|ADX05889.1| putative DNA gyrase/DNA topoisomerase IV subunit A [Organic Lake
phycodnavirus 1]
Length = 1083
Score = 375 bits (964), Expect = e-100, Method: Compositional matrix adjust.
Identities = 245/656 (37%), Positives = 344/656 (52%), Gaps = 130/656 (19%)
Query: 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFD 89
M++ YQKK+ EHIL PDTYIGS+E I M++ E + + + Y PGL+K+FD
Sbjct: 1 MALATQYQKKTDKEHILDNPDTYIGSIENINGPMYVF--EEGKITSKHMDYNPGLFKLFD 58
Query: 90 EILVNACDN-------KQRDPKMNCIK-ITVNQETNTISVWNNGKGIPVVEHKDEKMFVP 141
E +VN D+ K+ +P +N + I + + I++ NNG GI V +H +++P
Sbjct: 59 EGIVNCRDHVVRMIQQKETNPAVNLVNMINIEISDDMITMTNNGNGIDVEKHPTYDVWIP 118
Query: 142 TMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIF 201
++FG HL TS+NYN +E+K+TGG+NG+G KL I+
Sbjct: 119 ELVFG-------------------------HLRTSTNYNKDEEKITGGKNGFGFKLVLIW 153
Query: 202 SSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDK 261
S+ ++ET K + Q ++ N+ + P I SK +T + F PD + + L +
Sbjct: 154 STYGMIETVDHVRKLKYTQTFEQNLDIIHPPTITKCSKQPYTIVKFKPDYKRLGLNGLSQ 213
Query: 262 DMVDLITRRAYD-AAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENV 320
DM+ L RR YD A +TKDVKV LN L VK F Y++LY D QD+ I E
Sbjct: 214 DMISLFHRRVYDIAGITTKDVKVKLNSNVLDVKTFNHYIELYND-QDK-------ISEAP 265
Query: 321 NPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTII 380
N RW ++ S+ F+QVSFVN I T KGG+HVD + I+K++I ++KK K
Sbjct: 266 NERWSYSVCLSEE-FKQVSFVNGIFTGKGGKHVDYITQQIIKKLIAYIEKKKK------- 317
Query: 381 MLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTK 440
+ +KP +K ++IF+NC IVNP+FDSQTK
Sbjct: 318 ------------------------------IEIKPSILKEQMYIFLNCTIVNPSFDSQTK 347
Query: 441 ENMTLQKGSFGSTCV--------------------------------------------P 456
+ + FGS+CV P
Sbjct: 348 DYLNTPPSKFGSSCVVSDKFIEKLAKLGIMEQSCELSKIKEKNNSKKTDGNKQKNIRGIP 407
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL DAN AGTK+S CTLIL EGDSAK+ +SGL R+ YGV+P++GKLLNVR K
Sbjct: 408 KLVDANYAGTKDSKLCTLILCEGDSAKAGILSGLSPNDRNIYGVYPMKGKLLNVRGEATK 467
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
+I EN EI + KI+GL+ +KKY ++ LRY +++ MTDQD DGSHIKGL IN
Sbjct: 468 KINENKEIIEIKKIMGLESNKKYKNTDE---LRYNKILFMTDQDLDGSHIKGLCINLFEC 524
Query: 577 NWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
W +LL + FL TPI+KA+K + FY+ E+E WK+E + IKYYK
Sbjct: 525 LWSSLLDISGFLGFMNTPILKASKGTHKKQFYNEQEYELWKKENNEGKGWAIKYYK 580
Score = 89.7 bits (221), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 6/103 (5%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMK---PWY 716
+EP +Y PI+PM+LVNG +GIGTG+ T IP NP+E++D I + + EDP ++ P+Y
Sbjct: 787 VEPVFYAPILPMILVNGTKGIGTGFSTDIPCFNPKELIDYILKKL--EDPNHIRDFIPYY 844
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDY 759
K+F G I+ RF+ G+ +I + + ITEL +G W DY
Sbjct: 845 KHFTGTIEKEDSRRFITKGKYSI-QNKTIIITELPIGVWNEDY 886
>gi|253742615|gb|EES99414.1| DNA topoisomerase II [Giardia intestinalis ATCC 50581]
Length = 1492
Score = 374 bits (960), Expect = e-100, Method: Compositional matrix adjust.
Identities = 260/714 (36%), Positives = 356/714 (49%), Gaps = 156/714 (21%)
Query: 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFD 89
MS + Q+ + EH+LLRPD Y+GSV +WL N + + + VPGL KIFD
Sbjct: 1 MSQKTKIQRVTGSEHVLLRPDMYVGSVSSAETFLWLYNPDQG-LYYTKANIVPGLCKIFD 59
Query: 90 EILVNACDNKQRDP------KMNCIKITVNQETNTISVWNNG-KGIPVVEHKDEKMFVPT 142
EI+VNA DNKQRD KM+ IK V+ + ISV N+G +G+ + K EKM++PT
Sbjct: 60 EIIVNASDNKQRDSDRSAGHKMSYIKCDVDVVSGAISVENDGVEGLLHFDEK-EKMYLPT 118
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+ F G L+TSSNY+D E +VTGGRNGYGAKL NIFS
Sbjct: 119 LAF-------------------------GILMTSSNYDDTEQRVTGGRNGYGAKLTNIFS 153
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKS--GSKDDFTKITFTPDLTKFKMTS-L 259
+KF V E + F+Q W DNM SP I+ K +F + +FTPD KF MTS L
Sbjct: 154 TKFTV--LLQENGRVFEQTWTDNMKNTQSPRIEDVKDKKKNFIRFSFTPDYMKFGMTSGL 211
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYEN 319
D+D + RRA D A +K+ +NGE+L + NF+ Y ++ +Y +
Sbjct: 212 DRDHAAYMMRRAVDVAGCNIGLKLIINGEELKIANFEQYARM--------------VYRS 257
Query: 320 VNPRWEVAIAPSDRGFQQVSFVNS----------------IATTKGGRHVDAV---VDAI 360
+NP S QV +S TK +++ +D +
Sbjct: 258 INPEITQFYEASRGDAAQVGANDSDSEPDLKSAATKAKPKAKRTKKAVETNSLLVPIDEL 317
Query: 361 VK---------QIIEVVKKKNKDLGCT-----IIMLFGNKFNNVKNNKLQMAKTLIDIGV 406
K ++I V K + LG T + + F N N + + L I
Sbjct: 318 SKPSDWTSDYLKVISVNKFWDIGLGYTDSGELVQVSFVNSINTT-DGGTHVDAILDLIMS 376
Query: 407 RLGGMALKPF-------------QVKNHIWIFINCLIVNPTFDSQTKENMTLQKG----S 449
+L + +K F Q+K+ + +FI L+VNP+FDSQTK ++ K S
Sbjct: 377 QLNDILIKSFQQDAKNAKKLTRQQLKSCLVLFIRSLVVNPSFDSQTKISLKTDKAALLRS 436
Query: 450 FGST-------------------------------------------------CVPKLED 460
GST +PKL+D
Sbjct: 437 LGSTQAELTNLATQLVKRIQDVRPLWNALRQASYNQAAKLLTKTDGSKTSQLLGIPKLDD 496
Query: 461 ANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVV--GRDKYGVFPLRGKLLNVREATHKQI 518
A AGT+ S CTLILTEGDSAK+LAV G+ + G+ YGVFPLRGK++NVR + ++
Sbjct: 497 AIAAGTRESSKCTLILTEGDSAKALAVDGISSIEDGKKYYGVFPLRGKVINVRNESIDKV 556
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNW 578
NAEI NL KILGL+ Y+T E TLRYG +MIMTDQD DGSHIKGL+IN W
Sbjct: 557 SNNAEITNLKKILGLKQGMDYSTQEARNTLRYGHVMIMTDQDPDGSHIKGLLINLFDTYW 616
Query: 579 PTLLRL-PFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
L R FL+ FITPI++ T+AR +FY++PE+++W + T+ + I YYK
Sbjct: 617 NGLARSNKFLDFFITPIVRCTQARNMKTFYTIPEYKKWTQTVTDLPKWNINYYK 670
Score = 85.9 bits (211), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 79/132 (59%), Gaps = 9/132 (6%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGE----DPLPMKPW 715
IEP +Y PI+PMVL+NG++GIGTG+ T IP +P +++ +I+ I G+ + +KP+
Sbjct: 879 IEPFYYAPILPMVLINGSDGIGTGFSTTIPQFDPLDMLHSIRLRIYGKTTRNEKRNLKPF 938
Query: 716 YKNFKGEI--DYCGDSRFV---VNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGA 770
+KG + +Y +FV + G +++D ++IT+L +G WT Y++ ++T + G
Sbjct: 939 SNGWKGTMTHEYDKSGKFVRWRMTGCFSVVDLKTIQITDLPIGVWTESYREEIETWIKGN 998
Query: 771 EKDEVHPGPGRK 782
E+ P K
Sbjct: 999 EEAGAVKKPAAK 1010
>gi|448936287|gb|AGE59835.1| DNA topoisomerase II [Acanthocystis turfacea Chlorella virus
TN603.4.2]
Length = 1066
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 238/649 (36%), Positives = 350/649 (53%), Gaps = 130/649 (20%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYK 86
N ++ Y K SQ EH+L R DTY+GSV ++ + + ++ ++Y P K
Sbjct: 6 VNNHTMADRYVKLSQREHVLHRADTYVGSVAKEAREEYVYTGDA--IVKKSVSYSPAFLK 63
Query: 87 IFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFG 146
IFDEIL N+ D R M +K+T+ +T+ ++++N+G IPV +H++
Sbjct: 64 IFDEILTNSADCFNRGAPMTTLKVTI--DTDHVTIFNDGCSIPVEKHEE----------- 110
Query: 147 HLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFV 206
VP +IFGHLLT N++D +++ GRNGYG+KL NIFS KF
Sbjct: 111 ---------------GCYVPELIFGHLLTGENFDDTQERTGAGRNGYGSKLTNIFSKKFD 155
Query: 207 VETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDL 266
VE +K + Q W DNM+ + P++ SK TF PD +F M S+D+D +
Sbjct: 156 VEIYDGVHK--YIQSWSDNMTNASKPKVTKSSKPGSITTTFYPDFERFGMDSIDEDTRSV 213
Query: 267 ITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEV 326
+ RR YD AA VK+FL+G++L VK +DY ++YT+ K ++E+V+ W++
Sbjct: 214 LVRRVYDMAAVLTKVKIFLDGKRLDVKGAKDYFEMYTE--------TKPVFESVDG-WDI 264
Query: 327 AIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNK 386
+ PSD F+ VSFVN+ ++T+GG H VD + + + V + T+
Sbjct: 265 GVCPSDE-FRSVSFVNA-SSTRGGTH----VDLVANAVAKAVAEAALKKKVTV------- 311
Query: 387 FNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ 446
KP VKN ++IF+N +VNP+F SQTK+ +T +
Sbjct: 312 ---------------------------KPAVVKNKLFIFVNARVVNPSFSSQTKDILTSK 344
Query: 447 --------------------------------------KGSFGS-----TCVPKLEDAND 463
K + G+ T + KL DA
Sbjct: 345 NVKCSPSAAFLKKAVSAVLDDVIAETNVRESLVEMKNMKKTDGAKKVRLTGIKKLTDAAW 404
Query: 464 AGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAE 523
AG+KNS CTLILTEGDSA +LA +GL VVGR++YG+FPLRGKLLNVR+A+ I NAE
Sbjct: 405 AGSKNSGLCTLILTEGDSAATLATAGLAVVGRERYGIFPLRGKLLNVRDASVSSITNNAE 464
Query: 524 INNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR 583
I + +ILGL+ TT +D +LRYG +M+MTD D DGSHI GL++NF H +P+LL
Sbjct: 465 IVAIKQILGLRNG---TTYKDASSLRYGSVMLMTDADVDGSHIAGLVLNFFHAQFPSLLE 521
Query: 584 LP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+P FL++F TPI+ A + ++ FYSLP+FE+WK+ T+ + +KY K
Sbjct: 522 IPGFLKKFTTPIVIAKRGKDMKEFYSLPDFEDWKK--TSGDKWSVKYLK 568
Score = 123 bits (308), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 77/109 (70%), Gaps = 1/109 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE+Y+P IP +LVNGA GIGTG+ T IP++NP+EI+DN+KR+I G+ +PM PWY+
Sbjct: 776 KIEPEYYVPTIPFLLVNGANGIGTGFSTNIPSYNPKEIIDNVKRLIDGKPMVPMTPWYRG 835
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
FKG I F +G + + + ++EL VG WT DYK+ L+TL+
Sbjct: 836 FKGTIVEASPGVFTCSG-VYSMKGKMVTVSELPVGTWTNDYKEYLETLI 883
>gi|448934185|gb|AGE57739.1| DNA topoisomerase II [Acanthocystis turfacea Chlorella virus NTS-1]
Length = 1066
Score = 371 bits (953), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 240/649 (36%), Positives = 352/649 (54%), Gaps = 130/649 (20%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYK 86
N ++ Y K SQ +HIL R DTY+GSV ++ + + ++ ++Y P K
Sbjct: 6 VNNHTMASRYVKLSQRDHILHRSDTYVGSVAKEAREEYVYTGDA--IVKKSVSYSPAFLK 63
Query: 87 IFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFG 146
IFDEIL N+ D R M +K+T+ +T+ ++++N+G IPV +H++
Sbjct: 64 IFDEILTNSADCFNRGAPMTTLKVTI--DTDHVTIYNDGCSIPVEKHEE----------- 110
Query: 147 HLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFV 206
VP +IFGHLLT N++D +++ GRNGYG+KL NIFS KF
Sbjct: 111 ---------------GCYVPELIFGHLLTGENFDDAQERTGAGRNGYGSKLTNIFSKKFD 155
Query: 207 VETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDL 266
VE + + + Q W DNM+ + P++ SK TF PD +F M +D+D +
Sbjct: 156 VE--IYDGTRKYLQTWSDNMTNASKPKVTKSSKPGSITTTFYPDFERFGMDLIDEDTRSV 213
Query: 267 ITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEV 326
+ RR YD AA VK+FL+G++L VK +DY ++YTD VKI++E+V+ W++
Sbjct: 214 LVRRVYDMAAVLTKVKIFLDGKRLDVKGAKDYFEMYTD--------VKIVFESVDG-WDI 264
Query: 327 AIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNK 386
+ PSD F+ VSFVN+ ++T+GG HVD + +A+ K + E KK + ++
Sbjct: 265 GVCPSDE-FRSVSFVNA-SSTRGGTHVDLIANAVAKAVAEAALKKKVTVKPAVV------ 316
Query: 387 FNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ 446
NKL +IF+N +VNP+F SQTK+ +T +
Sbjct: 317 -----KNKL---------------------------FIFVNARVVNPSFSSQTKDILTSK 344
Query: 447 --------------------------------------KGSFGS-----TCVPKLEDAND 463
K + G+ T V KL DA
Sbjct: 345 NVKCSPSVAFLKKAVSAVLDDVIAETNVRESLVEMKNLKKTDGAKKVRLTGVKKLTDAAW 404
Query: 464 AGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAE 523
AG+KNS CTLILTEGDSA +LA +GL VVGR++YG+FPLRGKLLNVR+A+ I NAE
Sbjct: 405 AGSKNSGLCTLILTEGDSAATLATAGLAVVGRERYGIFPLRGKLLNVRDASVSSITNNAE 464
Query: 524 INNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR 583
I + +ILGL+ Y +D +LRYG +M+MTD D DGSHI GL++NF H +P+LL
Sbjct: 465 IVAIKQILGLRNGVNY---KDASSLRYGSVMLMTDADVDGSHIAGLVLNFFHAQFPSLLE 521
Query: 584 LP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+P FL++F TPI+ A + ++ FYSLP+FE+WK+ T+ + +KY K
Sbjct: 522 IPGFLKKFTTPIVIAKRGKDMKEFYSLPDFEDWKK--TSGDKWSVKYLK 568
Score = 119 bits (298), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 77/109 (70%), Gaps = 1/109 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE+Y+P IPM+LVNGA GIGTG+ T IP++NP++IVDN+KR+I G+ M PWY+
Sbjct: 776 KIEPEYYVPTIPMILVNGANGIGTGFSTNIPSYNPKDIVDNVKRLINGKAMTEMTPWYRG 835
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
FKG+I F +G + + + ++EL VG WT++YK+ L+ L+
Sbjct: 836 FKGDIKETSPGVFTCSG-VYDIKGKTVTVSELPVGTWTSEYKEQLEILI 883
>gi|361127443|gb|EHK99411.1| putative DNA topoisomerase 2 [Glarea lozoyensis 74030]
Length = 1656
Score = 368 bits (945), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 227/556 (40%), Positives = 295/556 (53%), Gaps = 113/556 (20%)
Query: 139 FVPTM--IFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAK 196
FVP + IF +L ++ N + D + I N E +++ +G G
Sbjct: 198 FVPGLYKIFDEILVNAADNKQNDPNMKAIKVQI----------NRETGEISVENDGAGIP 247
Query: 197 LCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKM 256
+ I +ET S+ K +KQ W DNMSK+ P+I + DFT++T+T D +KFKM
Sbjct: 248 I-EIHEVCASIETQDSKRGKRYKQTWTDNMSKMGKPKISASKSPDFTRVTWTADYSKFKM 306
Query: 257 TSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDP---- 312
+D D L+ RR YD A + KDVKV LNG KL + NF+ Y ++Y ++
Sbjct: 307 NGMDDDFEALVKRRVYDMAGTVKDVKVSLNGVKLNL-NFKKYCEMYAKAIQKERGEGEEG 365
Query: 313 -----VKIIYEN--VNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQII 365
+I E+ + WEVA A SD F QVSF NSIATT GG HV+ + D IV++++
Sbjct: 366 EKPAMATVILEDPKAHQCWEVAFAVSDGSFHQVSFANSIATTSGGTHVNYIADQIVEKLL 425
Query: 366 EVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIF 425
+VVKKKN G ALK Q++NHI++F
Sbjct: 426 DVVKKKNSK-----------------------------------GAALKAGQIRNHIFLF 450
Query: 426 INCLIVNPTFDSQTKENMTLQKGSFGSTCV------------------------------ 455
+N LIVNP F SQTKE +T KG FGS C+
Sbjct: 451 VNALIVNPAFTSQTKEQLTTLKGKFGSKCILTPKFLNDIGKTEAVQNILNFQAAKADQQL 510
Query: 456 -------------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFP 502
KL DAN AGTK +CTLILTEGDSAK LAV+G V+ D+ GVFP
Sbjct: 511 AKSDGNKRSRMSNAKLVDANLAGTKRGHECTLILTEGDSAKGLAVAGRAVLDPDRIGVFP 570
Query: 503 LRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQD 562
LRGKLLNVR+A +QI +NAEI N+ + LGL++ YT D K LRYG LMIM DQD D
Sbjct: 571 LRGKLLNVRDAGIEQITKNAEIQNIKQFLGLKHKHIYT---DTKGLRYGHLMIMADQDHD 627
Query: 563 GSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAR------EELSFYSLPEFEEW 615
GSHIKGL+INF+ +P+LL+LP F EFITPI+K K SF++LPE+E W
Sbjct: 628 GSHIKGLLINFLQVQFPSLLKLPDFFREFITPIVKVWKGPNPKKPINSKSFFTLPEYESW 687
Query: 616 KEETTNWHTYKIKYYK 631
KE H +K KYYK
Sbjct: 688 KERHATDHGWKHKYYK 703
Score = 148 bits (374), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/124 (58%), Positives = 91/124 (73%), Gaps = 2/124 (1%)
Query: 11 DVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRET 70
D N +GPS KK P +K + +K YQK SQ EHIL+RPDTYIGSVE + MW+ N ET
Sbjct: 131 DENMNLDGPSESKK-PKDKTATQK-YQKLSQYEHILVRPDTYIGSVEQTEQQMWVFNSET 188
Query: 71 NHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPV 130
+ ME R++++VPGLYKIFDEILVNA DNKQ DP M IK+ +N+ET ISV N+G GIP+
Sbjct: 189 SQMEFRKVSFVPGLYKIFDEILVNAADNKQNDPNMKAIKVQINRETGEISVENDGAGIPI 248
Query: 131 VEHK 134
H+
Sbjct: 249 EIHE 252
Score = 107 bits (267), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 77/118 (65%), Gaps = 8/118 (6%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMI------RGEDP--LP 711
IEP + P+IPMVLVNGA+GIGTGW T IPN++P IV+N+KR + GE+ +
Sbjct: 913 IEPTMFCPVIPMVLVNGADGIGTGWSTTIPNYHPLHIVENLKRRMGRLDHQNGEEEPFIT 972
Query: 712 MKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHG 769
M PW++ +KG + G +RF NG + ++++EITEL + WT D+K L+ ++ G
Sbjct: 973 MVPWFRGWKGIAEPAGPNRFNFNGIVREAANNEVEITELPIRVWTDDFKAKLEEIIKG 1030
Score = 53.9 bits (128), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 19/140 (13%)
Query: 810 DNELAKPQKTGPQLERQERQA------------AEGEDDEAGSQTQE----EEDPDKDYD 853
DN+L +K P L + R+A GE D+ +E E+ +D+D
Sbjct: 1143 DNKLVVSKKKKPVLVAELRKANYEAFPKVSDAKKSGETDDTVENEEEVAVDEDSGARDFD 1202
Query: 854 YLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCPGG 913
YLLGM WSLT ER ++L + K E L++ + DLW DLDA + ++
Sbjct: 1203 YLLGMPIWSLTQERVDKLKAQMLAKKEEQTALERLSEKDLWCQDLDAFVNEWEVQLQEEA 1262
Query: 914 NRTRGLALKRQTRYQPSNRV 933
+ +G+ R T+ + S+++
Sbjct: 1263 DYQKGI---RNTKRRMSSKI 1279
>gi|308159431|gb|EFO61962.1| DNA topoisomerase II [Giardia lamblia P15]
Length = 1492
Score = 366 bits (939), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 255/707 (36%), Positives = 353/707 (49%), Gaps = 156/707 (22%)
Query: 37 QKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNAC 96
Q+ + EH+LLRPD Y+GSV +WL + + VPGL KIFDEI+VNA
Sbjct: 8 QRVTGSEHVLLRPDMYVGSVSAAETFLWLY-EPGQGLYYTKANIVPGLCKIFDEIIVNAS 66
Query: 97 DNKQRDP------KMNCIKITVNQETNTISVWNNG-KGIPVVEHKDEKMFVPTMIFGHLL 149
DNKQRD KM+ IK V+ + ISV N+G +G+ + K EKM++PT+ F
Sbjct: 67 DNKQRDSDRSAGHKMSYIKCNVDVVSGAISVENDGVEGLLHFDEK-EKMYLPTLAF---- 121
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
G L+TSSNY+D E +VTGGRNGYGAKL NIFS+KF V
Sbjct: 122 ---------------------GILMTSSNYDDTEQRVTGGRNGYGAKLTNIFSTKFTV-- 158
Query: 210 SCSEYKKSFKQVWKDNMSKVTSPEIKS--GSKDDFTKITFTPDLTKFKMTS-LDKDMVDL 266
E + F+Q W DNM P I+ K +F + +FTPD KF MTS LD+D
Sbjct: 159 LLQENGQVFEQTWTDNMKNTKPPRIEDVKDKKKNFIRFSFTPDYMKFGMTSGLDRDHAAY 218
Query: 267 ITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNP---- 322
+ RRA D A +K+ +NG +L + NF+ Y ++ +Y ++NP
Sbjct: 219 MMRRAVDVAGCNVGLKLIINGTELKIANFEQYARM--------------VYRSINPEITQ 264
Query: 323 -----RWEVAIAPSDRGFQ--QVSFVNSIATTKGGRHVDAV--------VDAIVK----- 362
R + A A ++ + F + + K + AV VD + K
Sbjct: 265 FYEAGRSDTAQADANDSDSDLDIKFAAAKSKPKTRKTKKAVETNSLLIPVDELSKPSDWT 324
Query: 363 ----QIIEVVKKKNKDLGCT-----IIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMAL 413
++I V K + LG T + + F N N + + L + +L + +
Sbjct: 325 LDYLKVIPVNKFWDIGLGYTDSGELVQVSFVNSINTT-DGGTHVDAILDLVMSQLNDILI 383
Query: 414 KPF-------------QVKNHIWIFINCLIVNPTFDSQTKENMTLQKG----SFGST--- 453
K F Q+K+ + +FI L+VNP+FDSQTK ++ K S GST
Sbjct: 384 KSFQQDAKNAKKLTRQQLKSCLVLFIRSLVVNPSFDSQTKISLKTDKAALLRSLGSTQAE 443
Query: 454 ----------------------------------------------CVPKLEDANDAGTK 467
+PKL+DA AGT+
Sbjct: 444 LAALATQLVKRIQEIRPLWDSLRQASYNQAAKLLTKTDGSKTSQLLGIPKLDDAIAAGTR 503
Query: 468 NSIDCTLILTEGDSAKSLAVSGLGVV--GRDKYGVFPLRGKLLNVREATHKQILENAEIN 525
S CTLILTEGDSAK+LAV G+ + G+ YGVFPLRGK++NVR + ++ NAEI
Sbjct: 504 ESSKCTLILTEGDSAKALAVDGISSIEDGKKYYGVFPLRGKVINVRNESIDKVSNNAEIT 563
Query: 526 NLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL- 584
NL KILGL+ Y+T + TLRYG +MIMTDQD DGSHIKGL+IN W L R
Sbjct: 564 NLKKILGLKQGMDYSTQDARNTLRYGHVMIMTDQDPDGSHIKGLLINLFDTYWNGLARSN 623
Query: 585 PFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL+ FITPI++ T+AR +FY++PE+++W + T+ + I YYK
Sbjct: 624 KFLDFFITPIVRCTQARNMKTFYTIPEYKKWTQTVTDLPKWNINYYK 670
Score = 87.4 bits (215), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 80/133 (60%), Gaps = 9/133 (6%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGE----DPLPMKPW 715
IEP +Y PI+PMVL+NG++GIGTG+ T IP +P +++ +I+ I G+ + +KP+
Sbjct: 879 IEPFYYAPILPMVLINGSDGIGTGFSTTIPQFDPLDMLHSIRLRIYGKTTRNEKKTLKPF 938
Query: 716 YKNFKGEI--DYCGDSRFV---VNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGA 770
+KG + +Y + +FV + G +++D ++IT+L +G WT Y++ ++T + G
Sbjct: 939 SNGWKGTMTHEYDKNGKFVRWRMTGCFSVVDLKTIQITDLPIGVWTESYREEIETWIKGN 998
Query: 771 EKDEVHPGPGRKS 783
E P K+
Sbjct: 999 EDAGTAKKPATKA 1011
>gi|159117354|ref|XP_001708897.1| DNA topoisomerase II [Giardia lamblia ATCC 50803]
gi|30692178|gb|AAP33503.1| topoisomerase II [Giardia intestinalis]
gi|157437011|gb|EDO81223.1| DNA topoisomerase II [Giardia lamblia ATCC 50803]
Length = 1491
Score = 363 bits (933), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 256/706 (36%), Positives = 347/706 (49%), Gaps = 155/706 (21%)
Query: 37 QKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNAC 96
Q+ + EH+LLRPD Y+GSV +WL + + VPGL KIFDEI+VNA
Sbjct: 8 QRVTGSEHVLLRPDMYVGSVSAAETFLWLY-EPGQGLYYTKANIVPGLCKIFDEIIVNAS 66
Query: 97 DNKQRDP------KMNCIKITVNQETNTISVWNNG-KGIPVVEHKDEKMFVPTMIFGHLL 149
DNKQRD KM IK +V+ + ISV N+G +G+ + K EKM++PT+ F
Sbjct: 67 DNKQRDSDRSAEHKMTYIKCSVDVASGAISVENDGVEGLLHFDEK-EKMYLPTLAF---- 121
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
G L+TSSNY+D E +VTGGRNGYGAKL NIFS+KF V
Sbjct: 122 ---------------------GILMTSSNYDDTEQRVTGGRNGYGAKLTNIFSTKFTV-- 158
Query: 210 SCSEYKKSFKQVWKDNMSKVTSPEIKS--GSKDDFTKITFTPDLTKFKMTS-LDKDMVDL 266
E + F+Q W DNM P I+ K +F + +FTPD KF MTS LD+D
Sbjct: 159 LLQENGQVFEQTWTDNMKNTKPPRIEDVRDKKKNFIRFSFTPDYMKFGMTSGLDRDHAAY 218
Query: 267 ITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEV 326
+ RRA D A +K+ +NG +L + NF+ Y ++ +Y ++NP
Sbjct: 219 MMRRAVDVAGCNIGLKLIINGTELKIANFEQYARM--------------VYRSINPEITQ 264
Query: 327 AIAPSDRGFQQVSF--------VNSIATTKGGRHVDAV----------VDAIVK------ 362
S QV+ + S A K VD + K
Sbjct: 265 FYETSKGDTAQVNTNDSDSDLDIKSAAKAKPKTKRTKKTIETNSLLIPVDDLSKPSDWTH 324
Query: 363 ---QIIEVVKKKNKDLGCT-----IIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALK 414
++I V K + LG T + + F N N + + L I +L + +K
Sbjct: 325 DYLKVIPVNKFWDIGLGYTDSGELVQVSFVNSINTT-DGGTHVDAILDLIMSQLNDVLIK 383
Query: 415 PFQ-------------VKNHIWIFINCLIVNPTFDSQTKENMTLQKG----SFGST---- 453
FQ +K+ + +FI L+VNP+FDSQTK ++ K S GST
Sbjct: 384 SFQQDAKNAKKLTRQQLKSCLVLFIRSLVVNPSFDSQTKISLKTDKAALLRSLGSTQAEL 443
Query: 454 ---------------------------------------------CVPKLEDANDAGTKN 468
+PKL+DA AGT+
Sbjct: 444 ATLATQLVKRIQEIRPLWNSLRQASYNQAAKLLTKTDGSKTSQLLGIPKLDDAIAAGTRE 503
Query: 469 SIDCTLILTEGDSAKSLAVSGLGVV--GRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
S CTLILTEGDSAK+LAV G+ + G+ YGVFPLRGK++NVR + ++ NAEI N
Sbjct: 504 SSKCTLILTEGDSAKALAVDGISSIEDGKKYYGVFPLRGKVINVRNESIDKVSNNAEITN 563
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL-P 585
L KILGL+ Y+T E TLRYG +MIMTDQD DGSHIKGL+IN W L R
Sbjct: 564 LKKILGLKQGMDYSTQEARNTLRYGHVMIMTDQDPDGSHIKGLLINLFDTYWNGLARSNK 623
Query: 586 FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL+ FITPI++ T+AR +FY++PE+++W + T+ + I YYK
Sbjct: 624 FLDFFITPIVRCTQARNMKTFYTIPEYKKWTQTVTDLPKWNINYYK 669
Score = 85.9 bits (211), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 78/132 (59%), Gaps = 9/132 (6%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGE----DPLPMKPW 715
IEP +Y PI+PMVL+NG++GIGTG+ T IP +P +++ +I+ I G+ + +KP+
Sbjct: 878 IEPFYYAPILPMVLINGSDGIGTGFSTTIPQFDPLDMLHSIRLRIYGKTTRREKRTLKPF 937
Query: 716 YKNFKGEI--DYCGDSRFV---VNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGA 770
+KG + +Y +FV + G +++D ++IT+L +G WT Y++ ++T + G
Sbjct: 938 SNGWKGTMTHEYDKSGKFVRWRMTGCFSVVDLKTIQITDLPIGVWTESYREEIETWVKGN 997
Query: 771 EKDEVHPGPGRK 782
E P K
Sbjct: 998 EDAGTAKKPATK 1009
>gi|7242880|dbj|BAA92528.1| type II DNA topoisomerase [Pyropia tenera]
gi|7768587|dbj|BAA95458.1| type II DNA topoisomerase [Pyropia yezoensis]
Length = 402
Score = 361 bits (927), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 204/465 (43%), Positives = 261/465 (56%), Gaps = 111/465 (23%)
Query: 117 NTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTS 176
N +SVWNNG GIPV H E ++VP +IF GHLLTS
Sbjct: 2 NRVSVWNNGAGIPVAMHAKEGVYVPELIF-------------------------GHLLTS 36
Query: 177 SNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKS 236
SNY+D E KV GGRNGYGAKL NIFS++FVVET+ + K++KQ +K NM +P I++
Sbjct: 37 SNYDDGEKKVVGGRNGYGAKLANIFSTRFVVETADASSGKTYKQTFKRNMMDRGTPAIRA 96
Query: 237 GSK--DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKN 294
+K D +T+ITF PDL KF M L++D V ++ R D A + V+LNG KL + +
Sbjct: 97 SAKPRDTWTRITFEPDLAKFGMDRLNEDAVAVLQMRVVDMAGVVPGIAVYLNGAKLKINS 156
Query: 295 FQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVD 354
F+ YV L+ D I++ + RWEV ++ SD Q SFVNSIATTKGG HV+
Sbjct: 157 FKQYVDLHL----ADAPDAPRIHDATSGRWEVVVSLSDGQLTQTSFVNSIATTKGGTHVN 212
Query: 355 AVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALK 414
V D +V +I E + KK+K L +K
Sbjct: 213 HVADQLVSRIQEHIAKKHKTL------------------------------------KVK 236
Query: 415 PFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--TC------------------ 454
PFQ+K+ + I++ CL+ NP FDSQTKE +T + SFGS C
Sbjct: 237 PFQIKSQLSIYVKCLVENPAFDSQTKEMLTSRPASFGSKWVCPDRMAKDLIKSGVVESVL 296
Query: 455 ------------------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGL 490
+PKL+DAN AGT++S CTLILTEGDSAK+LA+SGL
Sbjct: 297 SLAESRQVKELAKTDGGKRARVSGIPKLDDANLAGTRDSAKCTLILTEGDSAKALAISGL 356
Query: 491 GVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQY 535
VVGRD YGVFPLRGKLLNVREATHKQI++NAEI NL KI+GLQ+
Sbjct: 357 SVVGRDYYGVFPLRGKLLNVREATHKQIMDNAEITNLKKIIGLQH 401
>gi|355725607|gb|AES08610.1| topoisomerase II alpha 170kDa [Mustela putorius furo]
Length = 290
Score = 360 bits (925), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 183/308 (59%), Positives = 223/308 (72%), Gaps = 30/308 (9%)
Query: 12 VQQNGNGPSPKKKTPANK-MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRET 70
V +N KK A K +S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + +
Sbjct: 9 VNENMQISKTKKNEDAKKRLSIERIYQKKTQLEHILLRPDTYIGSVELVTQHMWVYDEDI 68
Query: 71 NHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPV 130
+ RE+T+VPGLYKIFDEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPV
Sbjct: 69 G-INYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPV 127
Query: 131 VEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGR 190
VEHK EKM+VP +IF G LLTSSNY+D+E KVTGGR
Sbjct: 128 VEHKVEKMYVPALIF-------------------------GQLLTSSNYDDDEKKVTGGR 162
Query: 191 NGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPD 250
NGYGAKLCNIFS+KF VET+ EYKK FKQ W +NM + E+K + +D+T ITF PD
Sbjct: 163 NGYGAKLCNIFSTKFTVETASREYKKMFKQTWMNNMGRAGEMELKPFNGEDYTCITFQPD 222
Query: 251 LTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKL--PVKNFQDYVKLYT-DRQD 307
L+KFKM SLDKD+V L+ RRAYD A STKDVKVFLNG KL PVK F+ YV +Y D+ D
Sbjct: 223 LSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKLPVPVKGFRSYVDMYLKDKVD 282
Query: 308 EDGDPVKI 315
E G+P+K+
Sbjct: 283 ETGNPLKV 290
>gi|283771382|gb|ADB28927.1| topoisomerase II-like protein [Zea mays subsp. mays]
Length = 380
Score = 356 bits (913), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 201/419 (47%), Positives = 254/419 (60%), Gaps = 87/419 (20%)
Query: 226 MSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAST-KDVKV 283
M K + P+I K +++T++TF PDL KF MT L+ D+V L+ +R D A + K VKV
Sbjct: 1 MGKKSEPQITKCKQGENWTRVTFKPDLAKFNMTHLEDDVVALMRKRVVDMAGTLGKTVKV 60
Query: 284 FLNGEKLPVKNFQDYVKLYTDRQDEDG-DPVKIIYENVNPRWEVAIAPSDRGFQQVSFVN 342
L+G+++P+K+F DYV LY + D D K IYE VN RWEV ++ S+ FQQVSFVN
Sbjct: 61 ELDGQRVPIKSFCDYVDLYMKSANCDRPDNFKRIYEQVNDRWEVCVSQSEGQFQQVSFVN 120
Query: 343 SIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLI 402
IAT +GG HVD V + I ++ +V KKNK+ +
Sbjct: 121 RIATIRGGSHVDYVTNQIANHVVAIVNKKNKNANMKL----------------------- 157
Query: 403 DIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC-------- 454
VK+H+W+F+N LI NP FDSQTKE +T ++GSFGS C
Sbjct: 158 -------------HNVKSHLWVFVNALIDNPAFDSQTKETLTTRQGSFGSKCELSSDFLK 204
Query: 455 ------------------------------------VPKLEDANDAGTKNSIDCTLILTE 478
+PKLEDAN+AG K+S CTLILTE
Sbjct: 205 KVEKSGVIENVLSWADFKLSKELKKTDGSKKSRISGIPKLEDANEAGGKDSDKCTLILTE 264
Query: 479 GDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKK 538
GDSAK+LA+SG+ VVGRD YGVFPLRGKLLNVREA HKQI++NAEI ++ +ILGLQ+ K+
Sbjct: 265 GDSAKALAMSGIAVVGRDYYGVFPLRGKLLNVREANHKQIMDNAEIQHIKQILGLQHGKQ 324
Query: 539 YTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIK 596
Y E K LRYG LMIMTDQD DGSHIKGL+INFIH WP+LL++P FL EFITPIIK
Sbjct: 325 Y---ESTKGLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSLLKVPSFLVEFITPIIK 380
>gi|7242882|dbj|BAA92529.1| type II DNA topoisomerase [Bangia atropurpurea]
Length = 402
Score = 350 bits (897), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 202/465 (43%), Positives = 260/465 (55%), Gaps = 111/465 (23%)
Query: 117 NTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTS 176
N +SVWNNG GIPV H E ++VP +IF GHLLTS
Sbjct: 2 NRVSVWNNGAGIPVAMHAKEGVYVPELIF-------------------------GHLLTS 36
Query: 177 SNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKS 236
SNY+D E KV GGRNGYGAKL NIFS++FVVET+ + K++KQ + NM +P I++
Sbjct: 37 SNYDDGEKKVVGGRNGYGAKLANIFSTRFVVETADAASGKTYKQTFTRNMMDRGAPSIRA 96
Query: 237 GS--KDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKN 294
+ KD +T+ITF PDL KF M +LD D V ++ R D A + V+LNG +L V+N
Sbjct: 97 SAKPKDAWTRITFEPDLPKFHMAALDADAVAVLQMRVVDMAGVVPGIGVYLNGARLKVRN 156
Query: 295 FQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVD 354
F YV L+ D I+++ + RWEV ++ SD QQ SFVNSI+TTKGG HV
Sbjct: 157 FSQYVALHL----ADAPDAPRIHDDASGRWEVVVSLSDGQMQQTSFVNSISTTKGGTHVT 212
Query: 355 AVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALK 414
V D +V +I E + K++K L +K
Sbjct: 213 HVADQLVSRIQEHIAKRHKTL------------------------------------KVK 236
Query: 415 PFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS---------------------- 452
PFQ+K+ + IF+ CL+ NP FDSQTKE +T + +FGS
Sbjct: 237 PFQIKSQLSIFVKCLVENPAFDSQTKEMLTSRPSTFGSKWVCPDKMARDLMKSGVVESVL 296
Query: 453 ----------------------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGL 490
T + KL+DAN AGT++S CTLILTEGDSAK+LA+SGL
Sbjct: 297 SLAESRQSKELAKTDGGKRARVTGIAKLDDANQAGTRDSAKCTLILTEGDSAKALAISGL 356
Query: 491 GVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQY 535
V+GRD YGVFPLRGKLLNVREATHKQI++NAEI NL KI+GLQ+
Sbjct: 357 SVLGRDYYGVFPLRGKLLNVREATHKQIMDNAEITNLKKIIGLQH 401
>gi|221110139|ref|XP_002163496.1| PREDICTED: DNA topoisomerase 2-like [Hydra magnipapillata]
Length = 1315
Score = 349 bits (896), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 246/692 (35%), Positives = 352/692 (50%), Gaps = 147/692 (21%)
Query: 22 KKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYV 81
K KT K++VE +Y + +HIL PDTYIG+ M++ + + N + I YV
Sbjct: 34 KTKTNNRKLNVEDVYDGMTLHQHILSAPDTYIGTTTVDEVRMFIFDEDNNKIIEDVINYV 93
Query: 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVP 141
G +K FDEILVNA D+ RD I+IT++++T I+VWN+G GIPV HK ++VP
Sbjct: 94 AGFFKTFDEILVNARDHTVRDKTCKNIQITIDRDTGRITVWNDGNGIPVSIHKKYNIYVP 153
Query: 142 TMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIF 201
MIF G+LLTS NY + V G YGAKLCNI+
Sbjct: 154 EMIF-------------------------GNLLTSQNYGKKGKTVGGKNG-YGAKLCNIY 187
Query: 202 SSKFVVETSCSEY---------------KKSFKQVWKDNMSKVTSPEIK---SGSKDDFT 243
S +F + T + K ++Q +K+NM V P+I S S FT
Sbjct: 188 SKEFEIHTIGVDKIKEVDGKIVPDENAKKVEYRQTFKNNMYDVGKPDINKKISQSSKQFT 247
Query: 244 KITFTPDLTKFKMTS-LDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKL 301
+I++ PD K+ M L DM L+ +R YD AA T V + +NG + + F+DY++L
Sbjct: 248 QISYIPDYEKYGMNGRLTNDMYSLLVKRCYDIAACTPSTVNISVNGCNIKCRKFEDYIRL 307
Query: 302 YTDRQDEDGDPVKIIYENVNPRWEVAIAPS-DRGFQQVSFVNSIATTKGGRHVDAVVDAI 360
Y D+ + KI YE VN RWE+ I + + G + +SFVN I+T +GG HV VV+ +
Sbjct: 308 Y--YSDDPKEKPKITYEKVNDRWEIGIGFNKNVGDRYISFVNGISTFQGGTHVSHVVNNV 365
Query: 361 VKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKN 420
V ++ +KKK + II P +K
Sbjct: 366 VAKVTAFIKKKKEHKDLKII----------------------------------PATIKQ 391
Query: 421 HIWIFINCLIVNPTFDSQTKENMTLQKGSF---GSTC----------------------- 454
++ FINC++ +P F+SQTKE M + + G+ C
Sbjct: 392 YLTFFINCVVEDPGFNSQTKEYMNSKVADWCTCGNMCKDVKCELSDEFIEKLCGNGLMTE 451
Query: 455 -------------------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSG 489
+PKL+DA AG K S ++ TEGDSA+S + G
Sbjct: 452 VVNMSKFKEMRDLDKTDGKKVGKLKIPKLKDALWAGGKKSAKTSIFFTEGDSAQSFVIDG 511
Query: 490 LGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLR 549
+ V+G+++YGVFPLRGKLLNVR AT KQI N E N+ KILGL+ KY +D+ LR
Sbjct: 512 ISVIGQERYGVFPLRGKLLNVRNATAKQIKSNTEFLNIKKILGLKQGVKY---KDVSKLR 568
Query: 550 YGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREEL---- 604
YG ++I+TDQD DGSHIKGLIIN + + WP LL++ F++ + TPI+KA K ++
Sbjct: 569 YGSVIIITDQDPDGSHIKGLIINMLEYFWPELLQIDGFIKAYNTPIVKAWKKTDKKKASV 628
Query: 605 -SFYSLPEFEEWKE----ETTNWHTYKIKYYK 631
FYS+ EFE+W++ + ++ KYYK
Sbjct: 629 KQFYSMSEFEKWRDVEMKGDIKGNGWEYKYYK 660
Score = 88.6 bits (218), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 71/109 (65%), Gaps = 4/109 (3%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
++EP+ + PIIP+ ++NG++GIGTG+ +P HNP ++V N+KR+I +DP+ M PWY
Sbjct: 957 KVEPDVFAPIIPLGIINGSQGIGTGFSNNVPPHNPLDVVANLKRLINEKDPVDMLPWYNG 1016
Query: 719 FKGEIDYC--GDSRFVVNGEIAILDDDKLEITELQ-VGKWTTDYKDTLD 764
FKG I+ +++++ G+ I D +K+ I ++ V W Y+ ++
Sbjct: 1017 FKGTIEKNPKATNKYIIRGKYCI-DGNKIHIEDIPIVNGWIEPYESKME 1064
>gi|37928124|pdb|1QZR|A Chain A, Crystal Structure Of The Atpase Region Of Saccharomyces
Cerevisiae Topoisomerase Ii Bound To Icrf-187
(Dexrazoxane)
gi|37928125|pdb|1QZR|B Chain B, Crystal Structure Of The Atpase Region Of Saccharomyces
Cerevisiae Topoisomerase Ii Bound To Icrf-187
(Dexrazoxane)
Length = 418
Score = 348 bits (894), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 202/440 (45%), Positives = 262/440 (59%), Gaps = 75/440 (17%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEHIL RPDTYIGSVE + W+ + ET+ M + +T VPGL+KIFDEILVNA
Sbjct: 17 YQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNA 76
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP M I + ++ E +TI V N+GKGIP+ H E +++P MIFGHLLTSSNY+
Sbjct: 77 ADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYD 136
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D +E KVTGGRNGYGAKLCNIFS++F++ET+
Sbjct: 137 D-------------------------DEKKVTGGRNGYGAKLCNIFSTEFILETADLNVG 171
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
+ + Q W++NMS P+I S K +TK+TF PDLT+F M LD D++ ++ RR YD
Sbjct: 172 QKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDI 231
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDG-------DPVKIIYENVNP 322
S +D+ V+LNG+ L ++NF++YV+LY RQ ++G D I+YE +N
Sbjct: 232 NGSVRDINVYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINN 291
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RWEVA A SD FQQ+SFVNSIATT GG HV+ + D IVK+I E++KKK K +
Sbjct: 292 RWEVAFAVSDISFQQISFVNSIATTMGGTHVNYITDQIVKKISEILKKKKKKSVKSF--- 348
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
+KNN ++IFINCLI NP F SQTKE
Sbjct: 349 ------QIKNN----------------------------MFIFINCLIENPAFTSQTKEQ 374
Query: 443 MTLQKGSFGSTCVPKLEDAN 462
+T + FGS C LE N
Sbjct: 375 LTTRVKDFGSRCEIPLEYIN 394
>gi|302422958|ref|XP_003009309.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
gi|261352455|gb|EEY14883.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
Length = 1688
Score = 348 bits (893), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 197/470 (41%), Positives = 261/470 (55%), Gaps = 98/470 (20%)
Query: 221 VWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKD 280
W DNMSK+ +I S DF +ITF PD +F M +D D+ L+ RR YD A + K
Sbjct: 235 TWTDNMSKMGKAKITSSKSSDFVRITFKPDFKRFSMEGIDDDLEALLYRRVYDMAGTIKG 294
Query: 281 VKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDGDPVKIIYE---NVNPRWEVAIAPSD 332
+KV LNG + F+ Y ++Y +R E+G K+ E N NPRW+V SD
Sbjct: 295 IKVHLNGTVVKPSAFKGYSEMYAKAIAKERASEEGGEPKVTVEMDKNDNPRWDVGFTVSD 354
Query: 333 RGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKN 392
FQ +SFVN+IATT GG HV+ V D IV+ + + + KK K
Sbjct: 355 GSFQHISFVNNIATTSGGTHVNYVADQIVQYLTKYLDKKKK------------------- 395
Query: 393 NKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS 452
G ALKP ++NHI++FINC I NP+F+SQTKE MT + SFGS
Sbjct: 396 -----------------GHALKPQHIRNHIFVFINCRIENPSFNSQTKEQMTTKISSFGS 438
Query: 453 TCV-------------------------------------------PKLEDANDAGTKNS 469
CV KL DAN AGTK
Sbjct: 439 KCVLSEAFLKKVAASDAIQNIMSFAEKKADKMMAKSDGNRRSRINNAKLVDANLAGTKRG 498
Query: 470 IDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVK 529
+CTLILTEGDSAKSLAV+G ++ D+ GVFPLRGK+LNVR+A+ +QI +N EI N+ +
Sbjct: 499 HECTLILTEGDSAKSLAVAGRAILDPDRIGVFPLRGKMLNVRDASIEQITKNQEIQNIKQ 558
Query: 530 ILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLE 588
LGL++ + YT D K LRYG LMIM DQD DGSHIKGL+INF+ +P+LL++P F
Sbjct: 559 FLGLKHKQNYT---DTKGLRYGHLMIMADQDHDGSHIKGLLINFLQVQYPSLLQIPDFFR 615
Query: 589 EFITPIIKATKAR-----EEL-SFYSLPEFEEWKEETTN-WHTYKIKYYK 631
EFITPI+K + + ++L +F++ P++EEWKE N ++ KYYK
Sbjct: 616 EFITPIVKVWQGKNPKNPQKLQAFFTQPQYEEWKEAHKNEISRWEYKYYK 665
Score = 127 bits (318), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/131 (51%), Positives = 86/131 (65%), Gaps = 7/131 (5%)
Query: 17 NGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERR 76
+ P+P K K +VE+ YQK +QLEHI+ RPDTYIGSVE MW+ N+ET ME R
Sbjct: 109 SAPAPAVK--GTKKTVEETYQKLTQLEHIVKRPDTYIGSVERTEMPMWVYNKETQLMEFR 166
Query: 77 EITYVPGLYKIFDEILVNACDNKQR-----DPKMNCIKITVNQETNTISVWNNGKGIPVV 131
++T VPGLYKIFDEILVNA D K R + + IK+ +++E IS+ NNGKGIPV
Sbjct: 167 KVTTVPGLYKIFDEILVNAADIKVRREESGEEPVTHIKVNIDREAGQISIENNGKGIPVE 226
Query: 132 EHKDEKMFVPT 142
HK ++ T
Sbjct: 227 MHKQHGIYTWT 237
Score = 96.3 bits (238), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 71/122 (58%), Gaps = 11/122 (9%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMI--------RGEDPLP 711
IEP+ Y PIIPMVL NGA+GIGTGW T IPN++P EIV IKR + G+
Sbjct: 875 IEPKVYAPIIPMVLCNGADGIGTGWSTSIPNYHPMEIVRAIKRRMGRLDSDDTEGKPFET 934
Query: 712 MKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEIT--ELQVGKWTTDYKDTLDTLLHG 769
M PW++ +KG + R+ NG I DD EI EL + WT D+K L+ ++ G
Sbjct: 935 MMPWFRGWKGTPEPAEKDRYKFNG-IYETDDKTGEIIIKELPIRMWTDDFKAKLEEVISG 993
Query: 770 AE 771
A+
Sbjct: 994 AK 995
Score = 49.7 bits (117), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 806 EVFHDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTM 865
E F N+ K T E ++ A++ EDD G DYDYLL + WSLT+
Sbjct: 1131 EAFPKNDGKKQATT----EEEDMDASDNEDDSVGGAA--------DYDYLLSLPIWSLTL 1178
Query: 866 ERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
ER L K E + L ++ DLW DLD E+
Sbjct: 1179 ERLERLNSAIMKKKGEHDALLAQSEKDLWCQDLDEFTEE 1217
>gi|340502362|gb|EGR29059.1| hypothetical protein IMG5_163890 [Ichthyophthirius multifiliis]
Length = 967
Score = 342 bits (876), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 193/425 (45%), Positives = 256/425 (60%), Gaps = 90/425 (21%)
Query: 256 MTSLDKDMVDLITRRAYDAAA-STKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVK 314
M SL +D V L+ +R YD + ++KVFLN + + +K+F Y+ ++ DE +K
Sbjct: 1 MESLTEDTVCLLKKRVYDMSGIFNTNLKVFLNEQAIKIKSFSHYINMFLPEVDE---SLK 57
Query: 315 II-YENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNK 373
I E RWE+ + SD F+QVSFVN+I T++GG+HVD +VD IV++I E ++KKNK
Sbjct: 58 IYDKEMKTDRWEILLTFSDGVFKQVSFVNAICTSRGGKHVDYIVDKIVERIQEQIQKKNK 117
Query: 374 DLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNP 433
DL +KP+Q+K+HI++F+N LIVNP
Sbjct: 118 DLD------------------------------------IKPYQIKSHIFLFVNALIVNP 141
Query: 434 TFDSQTKENMTLQKGSFGS----------------------------------------- 452
TFDSQTKE +T + FGS
Sbjct: 142 TFDSQTKETLTTKASQFGSKPEISEKFIKAILKTGIVEQIVNQAKARENSKLQKTLKGGK 201
Query: 453 ----TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLL 508
T +PKL+DANDAGT S +CTLILTEGDSAK+LA++G+ VVGRD +GVFPLRGKLL
Sbjct: 202 KARITGIPKLDDANDAGTARSENCTLILTEGDSAKALAMAGIEVVGRDNFGVFPLRGKLL 261
Query: 509 NVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKG 568
NVREA KQI++N EI NL KI+GL SK T E+ K+LRYG +MIMTDQD DGSHIKG
Sbjct: 262 NVREAPKKQIMDNQEIQNLCKIMGLDPSK--TNYENTKSLRYGSIMIMTDQDSDGSHIKG 319
Query: 569 LIINFIHHNWPTLLRL-PFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN-WHTYK 626
L+INFIH+ WP+L R+ FL+EF+TPIIKATK E SF+++ +F+ + + N YK
Sbjct: 320 LLINFIHYFWPSLFRMNGFLKEFVTPIIKATKGNEIHSFFTIQDFKNFATQQGNRLKQYK 379
Query: 627 IKYYK 631
+KYYK
Sbjct: 380 VKYYK 384
Score = 114 bits (284), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWYIPIIP+ LVNG+EGIGTGW T IPN+N REIV+ I+ + G+ + PWYK F
Sbjct: 594 VEPEWYIPIIPLCLVNGSEGIGTGWSTNIPNYNHREIVEQIRNRLDGKPFTQIHPWYKGF 653
Query: 720 KGEIDYCGDSRFVVNGEIAI-LDDDKLEITELQVGKWTTDYKDTLDTLLHGAE 771
+G I+ ++ G+ I +++ + ITEL VGKWT DYK+ L+ L++ A+
Sbjct: 654 QGTIEISNKGGYITKGKWDIDEEEETIRITELPVGKWTKDYKNYLEELINPAK 706
>gi|34810356|pdb|1PVG|A Chain A, Crystal Structure Of The Atpase Region Of Saccharomyces
Cerevisiae Topoisomerase Ii
gi|34810357|pdb|1PVG|B Chain B, Crystal Structure Of The Atpase Region Of Saccharomyces
Cerevisiae Topoisomerase Ii
Length = 418
Score = 341 bits (874), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 199/440 (45%), Positives = 259/440 (58%), Gaps = 75/440 (17%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEHIL RPDTYIGSVE + W+ + ET+ + +T VPGL+KIFDEILVNA
Sbjct: 17 YQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCXIEKNVTIVPGLFKIFDEILVNA 76
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP I + ++ E +TI V N+GKGIP+ H E +++P IFGHLLTSSNY+
Sbjct: 77 ADNKVRDPSXKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEXIFGHLLTSSNYD 136
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D +E KVTGGRNGYGAKLCNIFS++F++ET+
Sbjct: 137 D-------------------------DEKKVTGGRNGYGAKLCNIFSTEFILETADLNVG 171
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
+ + Q W++N S P+I S K +TK+TF PDLT+F LD D++ + RR YD
Sbjct: 172 QKYVQKWENNXSICHPPKITSYKKGPSYTKVTFKPDLTRFGXKELDNDILGVXRRRVYDI 231
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDG-------DPVKIIYENVNP 322
S +D+ V+LNG+ L ++NF++YV+LY RQ ++G D I+YE +N
Sbjct: 232 NGSVRDINVYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINN 291
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RWEVA A SD FQQ+SFVNSIATT GG HV+ + D IVK+I E++KKK K
Sbjct: 292 RWEVAFAVSDISFQQISFVNSIATTXGGTHVNYITDQIVKKISEILKKKKK--------- 342
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
++K FQ+KN+ +IFINCLI NP F SQTKE
Sbjct: 343 ----------------------------KSVKSFQIKNNXFIFINCLIENPAFTSQTKEQ 374
Query: 443 MTLQKGSFGSTCVPKLEDAN 462
+T + FGS C LE N
Sbjct: 375 LTTRVKDFGSRCEIPLEYIN 394
>gi|11559433|dbj|BAB18783.1| type II DNA topoisomerase [Pyropia onoi]
Length = 382
Score = 334 bits (856), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 192/446 (43%), Positives = 246/446 (55%), Gaps = 111/446 (24%)
Query: 125 GKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEED 184
G GIPV H E ++VP +IF GHLLTSSNY+D E
Sbjct: 1 GAGIPVAMHAKEGVYVPELIF-------------------------GHLLTSSNYDDGEK 35
Query: 185 KVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK--DDF 242
KV GGRNGYGAKL NIFS++FVVET+ + K++KQ +K NM +P I++ +K D +
Sbjct: 36 KVVGGRNGYGAKLANIFSTRFVVETADASSGKTYKQTFKRNMMDRGTPAIRASAKPRDTW 95
Query: 243 TKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY 302
T+ITF PDL KF M SL++D V ++ R D A + V+LNG KL + +F+ YV L+
Sbjct: 96 TRITFEPDLAKFGMDSLNEDAVAVLQMRVVDMAGVVPGIAVYLNGTKLKINSFKQYVDLH 155
Query: 303 TDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVK 362
D I++ + RWEV ++ SD Q SFVNSIATTKGG HV+ V D +V
Sbjct: 156 L----ADAPDAPRIHDATSGRWEVVVSLSDGQLTQTSFVNSIATTKGGTHVNHVADQLVS 211
Query: 363 QIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHI 422
+I E + KK+K L +KPFQ+K+ +
Sbjct: 212 RIQEHIAKKHKTL------------------------------------KVKPFQIKSQL 235
Query: 423 WIFINCLIVNPTFDSQTKENMTLQKGSFGS--TC-------------------------- 454
I++ CL+ NP FDSQTKE +T + SFGS C
Sbjct: 236 SIYVKCLVENPAFDSQTKEMLTSRPASFGSKWVCPDRMAKDLIKSGVVESVLSLAESRQV 295
Query: 455 ----------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKY 498
+PKL+DAN AGT++S CTLILTEGDSAK+LA+SGL VVGRD Y
Sbjct: 296 KELAKTDGGKRARVSGIPKLDDANLAGTRDSAKCTLILTEGDSAKALAISGLSVVGRDYY 355
Query: 499 GVFPLRGKLLNVREATHKQILENAEI 524
GVFPLRGKLLNVREATHKQI++NAEI
Sbjct: 356 GVFPLRGKLLNVREATHKQIMDNAEI 381
>gi|33333782|gb|AAQ11992.1| topoisomerase II [Fusarium tricinctum]
Length = 415
Score = 329 bits (843), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 190/454 (41%), Positives = 250/454 (55%), Gaps = 99/454 (21%)
Query: 220 QVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKM-TSLDKDMVDLITRRAYDAAAST 278
Q W DNM V +I S DFT+ITF PD +F M +D D+ L+ RR YD +
Sbjct: 1 QPWTDNMQTVHKAKITSSKSADFTRITFKPDFKRFGMEDGIDDDLESLLYRRVYDMVGTI 60
Query: 279 KDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDGDP----VKIIYENVNPRWEVAIA 329
+ +KV+LN E++ +K+F+ Y LY +R +E+G V++ + +PRWEV A
Sbjct: 61 RGIKVYLNNEQIKIKDFKAYCDLYAKSIAKERSNEEGGAPTCTVEMDKDKGHPRWEVGFA 120
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ V D + K ++EV+ KK K
Sbjct: 121 VSDGTFQQVSFVNSIATTSGGTHVNYVADQVTKHLLEVLNKKRK---------------- 164
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G +LK ++NHI+IFINC I NP F SQTKE MT +
Sbjct: 165 --------------------GHSLKQNHLRNHIFIFINCYINNPAFTSQTKEQMTTKPSQ 204
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS C+ KL +AN AGT
Sbjct: 205 FGSKCILGDDFLKKIAKSDALQNILDFAEKKADKMLAKGDGSKRSRVNNAKLVEANFAGT 264
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
+ +CTLILTEGDSAK LAVSG ++ D+ GVFPLRGKLLNVR+A+ +QI +NAEI+N
Sbjct: 265 RRGHECTLILTEGDSAKGLAVSGRAILDPDRIGVFPLRGKLLNVRDASTEQIAKNAEISN 324
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ ++LGL++ YT D K LRYG LMIM DQD DGSHIKGL+INF+ +P+LL++P
Sbjct: 325 IKQLLGLKHKATYT---DTKNLRYGHLMIMADQDHDGSHIKGLLINFLEVAYPSLLKIPD 381
Query: 586 FLEEFITPIIKA------TKAREELSFYSLPEFE 613
F EFITPI+K K + SF++ E+E
Sbjct: 382 FFREFITPIVKVWQGPNPKKPQRLKSFFTQLEYE 415
>gi|343957945|emb|CBY93681.1| putative top2 protein [Glomus diaphanum]
Length = 359
Score = 326 bits (835), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 166/354 (46%), Positives = 228/354 (64%), Gaps = 49/354 (13%)
Query: 25 TPANKM--SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
TP+ + ++E++YQKK+QLEH+LLRPDTY+GSVEP+ E MW+ + E M R+ITYVP
Sbjct: 36 TPSKAIEKTIEEVYQKKTQLEHVLLRPDTYVGSVEPLKEKMWVYDSEKQGMVYRDITYVP 95
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKI DEILVNA DNK RDP MN IK+ +N+E TIS++NNGKGIP+ HK+EK
Sbjct: 96 GLYKIVDEILVNAADNKVRDPTMNTIKVNINKEEGTISIYNNGKGIPIEIHKEEK----- 150
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
FG E KVTGGRNGYGAKL NIFS
Sbjct: 151 --FG------------------------------------EKKVTGGRNGYGAKLANIFS 172
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGS-KDDFTKITFTPDLTKFKMTSLDK 261
++F+VET+ S K ++Q++++NMS + P++ S S K+++T ITF PD KF M+ D
Sbjct: 173 TEFIVETTDSSVSKKYRQIFRNNMSVIEEPKLTSYSKKEEYTMITFKPDFEKFNMSQFDD 232
Query: 262 DMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVN 321
D+ L+ +R YD A ++KV+LN EKL +K+F++Y++LY ++E +I+YE VN
Sbjct: 233 DITALLKKRVYDMVACVNNIKVYLNNEKLKLKDFKEYMQLYLGEREEPRP--EIVYERVN 290
Query: 322 PRWEVAIAPSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKD 374
RWE+ + PS F Q+SFVNSI T+KGG HV+ + D + +I+ VK K KD
Sbjct: 291 NRWEIGVLPSSESQFLQISFVNSICTSKGGTHVNYIADQLADRILSAVKSKKKD 344
>gi|10121859|gb|AAG13402.1|AF285156_1 topoisomerase II beta-2 [Gallus gallus]
Length = 264
Score = 325 bits (834), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 160/262 (61%), Positives = 191/262 (72%), Gaps = 26/262 (9%)
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNKQRD M CIKI+++ E+N IS+WNNGKGIPVVEHK EK++VP +IF
Sbjct: 28 ILVNAADNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIF----- 82
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VET+
Sbjct: 83 --------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETA 122
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
C EYK SFKQ W +NM K + P+IK DD+T ITF PDL+KFKM +LDKD+V L+TRR
Sbjct: 123 CKEYKHSFKQTWMNNMMKTSEPKIKHFEGDDYTCITFQPDLSKFKMENLDKDIVSLMTRR 182
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIA 329
AYD A S K VKV LNG+KLPV F+ YV LY D+ DE G +K+I+E VN RW+V +
Sbjct: 183 AYDLAGSCKGVKVMLNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHEVVNERWDVCLT 242
Query: 330 PSDRGFQQVSFVNSIATTKGGR 351
S++GFQQ+SFVNSIATTKGGR
Sbjct: 243 LSEKGFQQISFVNSIATTKGGR 264
>gi|11559435|dbj|BAB18784.1| type II DNA topoisomerase [Pyropia tenera]
Length = 382
Score = 322 bits (826), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 188/446 (42%), Positives = 242/446 (54%), Gaps = 111/446 (24%)
Query: 125 GKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEED 184
G GIPV H E ++VP +IF GHLLTSSNY+D E
Sbjct: 1 GAGIPVAMHAKEGVYVPELIF-------------------------GHLLTSSNYDDGEK 35
Query: 185 KVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK--DDF 242
KV GGRNGYGAKL NIFS++FVVET+ + K++KQ +K NM +P I++ +K D +
Sbjct: 36 KVVGGRNGYGAKLANIFSTRFVVETADASSGKTYKQTFKRNMMDRGTPAIRASAKPRDTW 95
Query: 243 TKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY 302
T+ITF PDL KF M SL++D V ++ R D A + V+LNG KL + +F+ YV L+
Sbjct: 96 TRITFEPDLAKFGMDSLNEDAVAVLQMRVVDMAGVVPGIAVYLNGTKLKINSFKQYVDLH 155
Query: 303 TDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVK 362
D I++ + RWEV ++ D Q SFVNSIATTKGG H + +V
Sbjct: 156 L----ADAPDAPRIHDATSGRWEVVVSLIDGQLTQTSFVNSIATTKGGTHFNHDGGQLVS 211
Query: 363 QIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHI 422
+I E + KK+K L +KPFQ+K+ +
Sbjct: 212 RIQEHIAKKHKTL------------------------------------KVKPFQIKSQL 235
Query: 423 WIFINCLIVNPTFDSQTKENMTLQKGSFGS--TC-------------------------- 454
I++ CL+ NP FDSQTKE +T + SFGS C
Sbjct: 236 SIYVKCLVENPAFDSQTKEMLTSRPASFGSKWVCPDRMAKDLIKSGVVESVLSLAESQQV 295
Query: 455 ----------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKY 498
+PKL+DAN AGT++S CTLILTEGDSAK+LA+SGL VVGRD Y
Sbjct: 296 KELAKTDGGKRARVSGIPKLDDANLAGTRDSAKCTLILTEGDSAKALAISGLSVVGRDYY 355
Query: 499 GVFPLRGKLLNVREATHKQILENAEI 524
GVFPLRGKLLNVREATHKQI++NAEI
Sbjct: 356 GVFPLRGKLLNVREATHKQIMDNAEI 381
>gi|12641857|dbj|BAB21547.1| type II DNA topoisomerase, partial [Pyropia haitanensis]
Length = 383
Score = 322 bits (826), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 190/447 (42%), Positives = 239/447 (53%), Gaps = 110/447 (24%)
Query: 125 GKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEED 184
G GIPV H E ++VP +IF GHLLTSSNY+D E
Sbjct: 1 GAGIPVAMHAKEGVYVPELIF-------------------------GHLLTSSNYDDGER 35
Query: 185 KVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK--DDF 242
KV GGRNGYGAKL NIFS++FVVET+ + ++ V++ NM +P I+ +K D +
Sbjct: 36 KVVGGRNGYGAKLANIFSTRFVVETADAASGHTYTHVFRRNMMDRGAPAIRPSAKPRDAW 95
Query: 243 TKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY 302
T+ITF PDL KF M LD D V ++ R D A + V+LNG KL V +F+ YV L+
Sbjct: 96 TRITFEPDLAKFGMGRLDADAVAILQMRVVDMAGVVPGIGVYLNGVKLKVHSFKQYVDLH 155
Query: 303 TDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVK 362
+ D +I RWEV ++ SD Q SFVNSIATTKGG HV V D +V
Sbjct: 156 L---ADAPDAPRIHDAPAGGRWEVVVSLSDGQLTQTSFVNSIATTKGGTHVGHVADQLVG 212
Query: 363 QIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHI 422
+I E + KK+K L +KPFQ+K+ +
Sbjct: 213 RIQEHIAKKHKAL------------------------------------KVKPFQIKSQL 236
Query: 423 WIFINCLIVNPTFDSQTKENMTLQKGSFGS--TC-------------------------- 454
IF+ CL+ NP FDS TKE +T + SFGS TC
Sbjct: 237 SIFLKCLVENPAFDSHTKEMLTSRPSSFGSKWTCPDRVAKELLKSGVVESVLSLAASRQV 296
Query: 455 ----------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKY 498
+PKL+DAN AGT++S CTLILTEGDSAK+LA+SGL V+GRD Y
Sbjct: 297 KELAKTDGGKRARVSGIPKLDDANLAGTRDSARCTLILTEGDSAKALAISGLSVLGRDLY 356
Query: 499 GVFPLRGKLLNVREATHKQILENAEIN 525
GVFPLRGKLLNVREATHKQI++NAEI
Sbjct: 357 GVFPLRGKLLNVREATHKQIMDNAEIT 383
>gi|383857457|ref|XP_003704221.1| PREDICTED: DNA repair protein REV1-like [Megachile rotundata]
Length = 1133
Score = 320 bits (821), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 201/469 (42%), Positives = 278/469 (59%), Gaps = 75/469 (15%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGG-IFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
GGYM AK+ KLEEQF EA+++SR IFQG+AIFVNGYT P+A+EL+
Sbjct: 19 GGYMAAKQAKLEEQFHKEASTESRTSEIFQGIAIFVNGYTN-----------PTADELRR 67
Query: 1378 LMMLHGGIYHHYESSR-TTHIIASNLPHTKI---KKLKPGDKIIKPEWIVDSISAGKLLD 1433
LM+ HGGIYHHY + TTHIIASNLP++KI +K + I KPEWI+DSI AG++L+
Sbjct: 68 LMIKHGGIYHHYLRPKLTTHIIASNLPYSKIMLYRKSQNPTPICKPEWIIDSIQAGRILN 127
Query: 1434 HKKYLLYT-GTDAKP-LTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKS 1491
+ YLLY+ TD +P L + K EN SK+ + ++ +TV+++ DN K+
Sbjct: 128 FQNYLLYSQCTDVQPKLNYVRTKKNEENITVQEDSKT--QQNNEANTVTNNNDN----KN 181
Query: 1492 EAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKS 1551
E + S +NP+ I + +A S+K++ F+ EFYN S
Sbjct: 182 ETIKSNTLNQGTSNPL-----------------IPSSSKEARSSKDSG---FISEFYNHS 221
Query: 1552 RLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWK--TSLGITEDE----------DL 1599
RLHH++TMG+MFK YVNELR+K +G F G+ +++++ S ++ D DL
Sbjct: 222 RLHHIATMGTMFKDYVNELRDKSNGKFPGLIKLKEYRHIKSNRLSSDSQLNFNNEFLPDL 281
Query: 1600 EETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGN---SSKVREG 1656
+E +N + +P+IMHIDMDCFFVSVG+R PEL+ P+AV H KGN ++ ++
Sbjct: 282 QE---ENRAEINQDPIIMHIDMDCFFVSVGLRDKPELKGLPIAVTHAKGNKNLANSNKQA 338
Query: 1657 VDRQAEFDIYRQRT--MNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSY 1714
+D A D + R+ G+ NGMF+G ALK CPNLK + YDFEGYKEVSY
Sbjct: 339 LDGNANKDDEHGSLSEVASCSYEARKAGVKNGMFLGEALKICPNLKTISYDFEGYKEVSY 398
Query: 1715 CLYNLIASLTLNIEAVS---LYT------NESFLNAL--PEDIRQEVLD 1752
LY+ +AS TLNIEAVS +Y +ES L + IRQE+ D
Sbjct: 399 MLYDTVASYTLNIEAVSCDEMYADCTKILDESCLTPMEFATIIRQEIKD 447
Score = 281 bits (718), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 152/327 (46%), Positives = 198/327 (60%), Gaps = 45/327 (13%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEMY DC+++L E LTP++FA+ +R+ I +TGC STGFGSNKL ARLATKK
Sbjct: 411 IEAVSCDEMYADCTKILDESCLTPMEFATIIRQEIKDKTGCPVSTGFGSNKLLARLATKK 470
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKPNGQF++ + + + DLPGVG++ KLNS+ +TC +LQ ISL LQ E
Sbjct: 471 AKPNGQFYMQHNV-EKCIGTFNVQDLPGVGYTTAHKLNSINVKTCTELQAISLATLQKEF 529
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
G K G LY CRG D+ +L EH RKSVSAEVNYGIRF NN+E FLK+L+ EV RL
Sbjct: 530 GKKTGEMLYNMCRGIDNSKLNLEHVRKSVSAEVNYGIRFDNNEEAVDFLKKLSQEVCNRL 589
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVR 2138
+ KG+CITLKL+VR+ EAP+E KF+GHG+CDYITKS +L
Sbjct: 590 SKANAKGRCITLKLLVRAKEAPKETEKFMGHGLCDYITKSKNLI---------------- 633
Query: 2139 SAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQ 2198
AP I+ + KEV+ + N+++ P + RGIGIQ
Sbjct: 634 ---AP------------------------INDVDIMTKEVIALWNQMQKVPEDARGIGIQ 666
Query: 2199 VSKLE-HQSKTLATIDTFFTNKGKPPD 2224
+S+LE ++K+ T F K K D
Sbjct: 667 ISRLEILKNKSRDVTLTSFVTKNKQND 693
Score = 54.3 bits (129), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 35/47 (74%), Gaps = 2/47 (4%)
Query: 1180 SAPKPQASSTKNASNED--FLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
S P +SS + S++D F+ EFYN SRLHH++TMG+MFK YVN+L
Sbjct: 194 SNPLIPSSSKEARSSKDSGFISEFYNHSRLHHIATMGTMFKDYVNEL 240
>gi|11559431|dbj|BAB18782.1| type II DNA topoisomerase, partial [Pyropia suborbiculata]
Length = 382
Score = 320 bits (821), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 188/446 (42%), Positives = 237/446 (53%), Gaps = 111/446 (24%)
Query: 125 GKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEED 184
G GIP H E ++VP +IF GHLLTSSN +D E
Sbjct: 1 GAGIPTAMHAKEGVYVPELIF-------------------------GHLLTSSNCDDGEK 35
Query: 185 KVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK--DDF 242
KV GGRNGYGAKL NIFS++FVVET+ + K++KQ +K NM P I++ +K D +
Sbjct: 36 KVVGGRNGYGAKLANIFSTRFVVETADASSGKTYKQTFKRNMMDRGVPVIRASAKARDAW 95
Query: 243 TKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY 302
T+ITF PDL KF M LD D ++ R D A + V LNG KL + +F+ YV L+
Sbjct: 96 TRITFEPDLAKFGMERLDADATAVLQMRVVDMAGVVPGIAVHLNGVKLKINSFKQYVDLH 155
Query: 303 TDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVK 362
D I++ RWEV ++ SD Q SFVNSIATTKGG HV+ V D +V
Sbjct: 156 L----ADAPDAPRIHDGSADRWEVVVSVSDGQLTQTSFVNSIATTKGGTHVNHVADQLVG 211
Query: 363 QIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHI 422
+I E + KK K L +KPFQ+K+ +
Sbjct: 212 RIQEHIAKKRKTL------------------------------------KVKPFQIKSQL 235
Query: 423 WIFINCLIVNPTFDSQTKENMTLQKGSFGS------------------------------ 452
I++ CL+ NP FDSQTKE +T + +FGS
Sbjct: 236 SIYVKCLVENPAFDSQTKEMLTSRPATFGSKWVCPDRMAKDLIKSGVVENVLSLAESQQV 295
Query: 453 --------------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKY 498
T +PKL+DAN AGT++S CTLILTEGDSAK+LA+SGL V+GRD Y
Sbjct: 296 KELAKTDGGKRARVTGIPKLDDANLAGTRDSAKCTLILTEGDSAKALAISGLSVLGRDFY 355
Query: 499 GVFPLRGKLLNVREATHKQILENAEI 524
GVFPLRGKLLNVREATHKQI+ENAEI
Sbjct: 356 GVFPLRGKLLNVREATHKQIMENAEI 381
>gi|33333784|gb|AAQ11993.1| topoisomerase II [Gibberella zeae]
Length = 415
Score = 320 bits (819), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 186/454 (40%), Positives = 243/454 (53%), Gaps = 99/454 (21%)
Query: 220 QVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKM-TSLDKDMVDLITRRAYDAAAST 278
Q W DNM+ + +I + +T+ITF PD +F M +D D+ L+ RR YD +
Sbjct: 1 QPWTDNMNTMHKAKITASKSASYTRITFKPDFKRFGMEDGIDDDLESLMYRRVYDMVGTI 60
Query: 279 KDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDGDP----VKIIYENVNPRWEVAIA 329
+ +KVFLNGE++ +K+F+ Y LY DR DE+G V++ + +PRWEV A
Sbjct: 61 RGIKVFLNGEQVKIKDFKAYCDLYAKSIAKDRLDEEGGSPTCTVEMDKDKSHPRWEVGFA 120
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HV+ + D I K ++ + KK K
Sbjct: 121 VSDGTFQQVSFVNSIATTAGGTHVNYIADQITKSLLNTLNKKRK---------------- 164
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G LK ++NHI++FINC I NP F SQTKE MT +
Sbjct: 165 --------------------GHTLKQNHLRNHIFVFINCYIDNPAFSSQTKEQMTTKASQ 204
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS C KL +AN AGT
Sbjct: 205 FGSKCTLGDDFLKKVAKSDAIQNILDMAEKKADKMMAKSDGNKRSRVNNAKLVEANFAGT 264
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
+ +CTLILTEGDSAK LAVSG ++ D+ GV PLRGKLLNVR+A+ QI +N EI N
Sbjct: 265 RRGHECTLILTEGDSAKGLAVSGRAILDPDRIGVLPLRGKLLNVRDASPDQIAKNQEIQN 324
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ + LGL++ YT D K LRYG LMIM DQD DGSHIKGL+INF+ +P+LLR+P
Sbjct: 325 IKQFLGLKHKTSYT---DTKNLRYGHLMIMADQDHDGSHIKGLLINFLEVQFPSLLRIPD 381
Query: 586 FLEEFITPIIKA------TKAREELSFYSLPEFE 613
F EFITPI+K K ++ SF++ E+E
Sbjct: 382 FFREFITPIVKVWQGPNPKKPQKLKSFFTQLEYE 415
>gi|312101616|ref|XP_003149691.1| hypothetical protein LOAG_14142 [Loa loa]
Length = 421
Score = 318 bits (816), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 180/450 (40%), Positives = 246/450 (54%), Gaps = 105/450 (23%)
Query: 114 QETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHL 173
+E NTIS+WNNG+GIPV H E ++VPTMIFG L TSSN
Sbjct: 22 REKNTISIWNNGRGIPVEIHPTEGVYVPTMIFGTLFTSSN-------------------- 61
Query: 174 LTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPE 233
Y+D E K+ GGRNG+GAKLCNIFS++F VET + F Q W+ NM+ V P
Sbjct: 62 -----YDDSELKIVGGRNGFGAKLCNIFSTEFCVETCTKQSGLRFFQCWRKNMNDVDDPI 116
Query: 234 IKS--GSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLP 291
I + + D+T +TF PDL+KFK+++LD+D ++++ RR D A + V VFLNG K+
Sbjct: 117 ISNVDTNASDYTCVTFKPDLSKFKLSTLDEDTIEVMIRRTVDIAGTLDGVHVFLNGTKIE 176
Query: 292 VKNFQDYVKLYTDRQDEDGDPVKI-IYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGG 350
V F+DYVKL++ E+ + + Y NVN RW++A+A S+ G+ SFVN+I T KGG
Sbjct: 177 VSGFEDYVKLFSTNTSENFENFTVPSYCNVNNRWQIAVARSNDGYNHTSFVNNINTLKGG 236
Query: 351 RHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGG 410
RHVD +++ +V ++ + ++++ C L
Sbjct: 237 RHVDYIMNQLVSRLKQEIRQR-----CDCEKL---------------------------- 263
Query: 411 MALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTCV--------------- 455
+ QVKN + IF+N LI NP F+SQ+KE +T FGSTC+
Sbjct: 264 --ISTHQVKNRLHIFVNSLIENPAFESQSKEYLTTSVKDFGSTCIIPESFYENFFKDSDI 321
Query: 456 ---------------------------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVS 488
KLEDA DAGTKN +CTLI+TEGDSAK+LAV+
Sbjct: 322 IHYLLCDISEQHTASLNRSIKRPLWDLSKLEDAVDAGTKNGYNCTLIVTEGDSAKALAVA 381
Query: 489 GLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
GL V+GR +YGVFP+RGKL NVR K +
Sbjct: 382 GLAVIGRKQYGVFPVRGKLTNVRGMDAKMV 411
>gi|301109930|ref|XP_002904045.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
gi|262096171|gb|EEY54223.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
Length = 807
Score = 318 bits (816), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 168/339 (49%), Positives = 208/339 (61%), Gaps = 77/339 (22%)
Query: 331 SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNV 390
S+ GFQQ+SFVN I TTKGG+HV +VD I +++ V+KKKNK
Sbjct: 2 SEDGFQQMSFVNGICTTKGGQHVSYIVDQITAKLVGVLKKKNK----------------- 44
Query: 391 KNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSF 450
G A+KP +KNH++++++ LI NP FDSQTKE +T + SF
Sbjct: 45 -------------------GEAVKPNYIKNHMFVYVSALIDNPAFDSQTKETLTTRANSF 85
Query: 451 GSTC-------------------------------------VPKLEDANDAGTKNSIDCT 473
GST +PKL+DAN AGT S DCT
Sbjct: 86 GSTFNLSDKFLKQLEKSGLVEKILLAATQGGSSGKRSRLTGIPKLDDANHAGTAKSKDCT 145
Query: 474 LILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGL 533
LILTEGDSAK++AV GL VVGRD YGVFPLRGK+LNVREA+H QIL+N EI N+VKILGL
Sbjct: 146 LILTEGDSAKTVAVGGLAVVGRDYYGVFPLRGKMLNVREASHSQILKNEEIQNVVKILGL 205
Query: 534 QYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL-PFLEEFIT 592
+Y +KY E K LRYG LMIM DQD DGSHIKGL+IN IHH WP+LL + FL+EFIT
Sbjct: 206 KYGQKY---ESTKGLRYGHLMIMADQDHDGSHIKGLVINLIHHFWPSLLVVDGFLQEFIT 262
Query: 593 PIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
PI+K TK R + FY++PE+E W+E T + IK+YK
Sbjct: 263 PIVKCTKGRTKEVFYTMPEYEAWRERTNQGRGWIIKFYK 301
Score = 119 bits (299), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 74/114 (64%), Gaps = 9/114 (7%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWYIPIIPMVLVNG++GIGTGW PN+NP +I+ +++MI GE+ P+ PWY+ F
Sbjct: 515 IEPEWYIPIIPMVLVNGSDGIGTGWS---PNYNPLDIIKGLRQMINGEEIAPLTPWYREF 571
Query: 720 KGEIDYCGDSR------FVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
G I +SR ++V G + DD L ++EL V WT YK L+ LL
Sbjct: 572 TGHIVEKANSRGTDTGNYIVQGLYEVTDDSTLVVSELPVKSWTQTYKQFLEGLL 625
>gi|328715382|ref|XP_003245615.1| PREDICTED: DNA repair protein REV1-like [Acyrthosiphon pisum]
Length = 871
Score = 318 bits (815), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 164/321 (51%), Positives = 216/321 (67%), Gaps = 44/321 (13%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
V AVSCDE+Y+DCS +L+ +P A++LR+ I ++T C CSTG GSN L ARLATKK
Sbjct: 364 VEAVSCDELYLDCSHILETTKASPFDLATFLRKEIKEKTQCPCSTGIGSNCLLARLATKK 423
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKP+GQF+L P II DFM NI +SD+PGVG +L KL++LG TCG+L +SL+ LQ+E
Sbjct: 424 AKPDGQFYLEPGIIMDFMRNIDISDVPGVGRTLGHKLSTLGISTCGELSALSLQTLQSEF 483
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
GNK GL+LYKHCRGEDD++L ++++ KSVSAEVNYGIRF+N +E E F++QL EVEKRL
Sbjct: 484 GNKTGLSLYKHCRGEDDRKLNYDYKPKSVSAEVNYGIRFKNKEESENFVRQLCDEVEKRL 543
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVR 2138
++++M GK +TLKLM+R+ EAP+E++KFLGHG CD ITKSSS
Sbjct: 544 DDIEMNGKTVTLKLMIRNVEAPKESAKFLGHGFCDNITKSSS------------------ 585
Query: 2139 SAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQ 2198
I K +S + I Q V I+N+L +DP ELRGIGIQ
Sbjct: 586 -------------------IIKPTSNSIIIFQV------VNKIMNQLDIDPSELRGIGIQ 620
Query: 2199 VSKLEHQSKTLA-TIDTFFTN 2218
++KLE + T A I+ F +N
Sbjct: 621 MNKLESRKVTGAGRIENFISN 641
Score = 169 bits (429), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 128/233 (54%), Gaps = 43/233 (18%)
Query: 1535 TKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGIT 1594
KNAS FL EFYN SRLH +STM + FK VN+ R+++ + G + ++KW G+
Sbjct: 143 AKNASESTFLSEFYNNSRLHLISTMATTFKHLVNDTRKRNQTDYPGRQRLKKWIEQNGVK 202
Query: 1595 EDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVR 1654
+ + S + ++MHIDMDCFFVS G+ PEL+ PVAV H KGN SK R
Sbjct: 203 D-------MLSHDSELDSGKIVMHIDMDCFFVSAGLVERPELRGLPVAVTHAKGNLSKKR 255
Query: 1655 EGVDRQAEFDIY---------------------RQRTMNRMGLN--------------TR 1679
EGVD AEF +Y + R+ R G+N R
Sbjct: 256 EGVDLGAEFGLYVKRWRGDDTENGEEDEEVQEIKPRSSKRDGINETDSMAEIACCSYEAR 315
Query: 1680 EYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLY-NLIASLTLNIEAVS 1731
+ G+ NGM VG ALK CP LK++PY+FE YK V++ LY +++ TL++EAVS
Sbjct: 316 KVGIKNGMLVGQALKMCPTLKLIPYNFEQYKRVAHTLYTHIMNDYTLDVEAVS 368
Score = 133 bits (335), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/136 (55%), Positives = 91/136 (66%), Gaps = 16/136 (11%)
Query: 1316 KKKGGYMEAKKRKLEEQFELEANSDS---RGGIFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
+K GGYMEAKK KLEEQF +A DS + IF+G++IFVNGYT +PSA
Sbjct: 12 EKWGGYMEAKKTKLEEQFTEKAAGDSNHVKSQIFKGISIFVNGYT-----------LPSA 60
Query: 1373 EELKALMMLHGGIYHHYESSR-TTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKL 1431
ELK +MM +GGIYHHY TTHIIASNLP K+K LK KI+KPEWI DSI GKL
Sbjct: 61 NELKRIMMENGGIYHHYHRPNITTHIIASNLPTAKLKLLKQF-KIVKPEWISDSIKEGKL 119
Query: 1432 LDHKKYLLYTGTDAKP 1447
L+++ YLL+ +P
Sbjct: 120 LNYEDYLLFIDQPNQP 135
Score = 58.5 bits (140), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 25/153 (16%)
Query: 1737 SFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPSPSPILDMS 1796
SFL+ALP D+R E+ ++L ++ QN H +V + S +
Sbjct: 728 SFLDALPADLRLEIENELKANEN-----QN--------------HPIVENENSSTM---- 764
Query: 1797 TSILDTTTSHILSSNVSLQEMRTMLREWMC-ESQPEPSDIEMFSEYLSNLVEERHLNPIV 1855
I T S L +V + +M+ + EW+ E++P+ D M S+YL NLV +
Sbjct: 765 -EITMTEESSKLYQHVQIDQMKEFIEEWVVTENEPKTCDNIMVSKYLCNLVRDTKTEDAY 823
Query: 1856 ILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAM 1888
++R L R + K+ + W ++Y ++L VQ M
Sbjct: 824 EIIRKLYRLIKNKDHSAWKQSYFDVLKDVQETM 856
Score = 46.6 bits (109), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 23/34 (67%)
Query: 1189 TKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVN 1222
KNAS FL EFYN SRLH +STM + FK VN
Sbjct: 143 AKNASESTFLSEFYNNSRLHLISTMATTFKHLVN 176
>gi|27447212|gb|AAL99217.1| kinetoplast and nucleus-associated type II DNA topoisomerase [Bodo
saltans]
Length = 1247
Score = 318 bits (814), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 221/638 (34%), Positives = 324/638 (50%), Gaps = 79/638 (12%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y+K S ++H+LLRP+ Y+GSVE ++L++ + + +E GL KIFDEI++NA
Sbjct: 5 YKKLSPIDHVLLRPEMYVGSVESQPIQLFLLDDQHSKVEWTTADLNHGLLKIFDEIVLNA 64
Query: 96 CDN---KQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSS 152
DN +R+P M I +T+++ T I+V N+G GIP+V+ KD K+ +P MIFGHLLTS
Sbjct: 65 ADNIHNSKRNP-MTFINVTIDETTGQITVENDGAGIPLVKSKDHKLLIPEMIFGHLLTS- 122
Query: 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCS 212
SNY+++ D ++ GR+GYGAKL NI S +F+V C
Sbjct: 123 ------------------------SNYDNDPDSMSAGRHGYGAKLTNIMSQEFIV--YCR 156
Query: 213 EYKKSFKQVWKDNMSKVTSPEIK-SGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRA 271
K W D+M + +++ + + TKITFTPD + F +T L KDM ++ +R
Sbjct: 157 TADKEVTIRWTDHMRSIDDYQVQPTNEAGNLTKITFTPDFSVFGVTKLTKDMYRILHKRI 216
Query: 272 YDAAASTKDVKVFLNGEKLPVKNFQDYVKLY----------TDRQDEDGD----PVKI-- 315
D AA+ V V NG L V +F YVKL+ T DGD P ++
Sbjct: 217 LDLAAAFPSVTVSFNGTALDVGSFASYVKLFEAPASLFSAPTAPVVADGDAAPPPAELNK 276
Query: 316 --IYENVNPRWEVAIAP----SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVK 369
++E + R P S R F + VN + T GG HV A + + +V
Sbjct: 277 PFLFEVKHLRLAFIPQPQASVSRRTF---AVVNGVVTYSGGTHVQAAQQILTDAVDALVA 333
Query: 370 KKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCL 429
+K K+ + F F V + K VRL P + + L
Sbjct: 334 QKKKEGIIVTVNTFLRYFTTVVFLETTQPKFDSQSKVRLVSKVKFPRFPTGQL---VEHL 390
Query: 430 IVNPTFDSQTKENMTLQKGSFGS------------TCVPKLEDANDAGTKNSIDCTLILT 477
+K M + + + + KL DA AG S TLI+T
Sbjct: 391 ATMTFLSDASKGQMDVLNKELNALIQVSGKRRPMISTLTKLVDAASAGGSGSEIRTLIVT 450
Query: 478 EGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSK 537
EGDSAK+LA++ L R +GVFPLRGKLLNVR ++ + E+ +L LG++ +
Sbjct: 451 EGDSAKALALNSLSNEQRKYFGVFPLRGKLLNVRNNNLARLKKCKELCDLFAALGIEIGR 510
Query: 538 KYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR--LPFLEEFITPII 595
+YT+ E +LRY RL++MTDQD DG+HIKGL+I+ WP+LL+ L F+ F TP+I
Sbjct: 511 RYTSTE---SLRYQRLLVMTDQDADGTHIKGLLISAFESLWPSLLQHSLGFISIFSTPLI 567
Query: 596 KA-TKAREELSFYSLPEFEEWKEETTNWHT-YKIKYYK 631
+A T+ + SFY++ EF WK + + IKYYK
Sbjct: 568 RATTRGGDVHSFYNVQEFVAWKHDNARLASECFIKYYK 605
Score = 67.4 bits (163), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLP----MKPW 715
+EP +Y+PIIPM+LVNG+ GIG G+ + H+P ++V ++RM+R P ++PW
Sbjct: 817 VEPRFYVPIIPMLLVNGSVGIGFGFACTVQMHHPLDVVTVVRRMMRKNTPTQALEGLRPW 876
Query: 716 YKNFKGEI 723
+ G +
Sbjct: 877 AVGYSGSV 884
>gi|183987582|gb|ACC65781.1| topoisomerase II [Pleurotus salmoneostramineus]
Length = 552
Score = 317 bits (811), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 167/357 (46%), Positives = 213/357 (59%), Gaps = 84/357 (23%)
Query: 320 VNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTI 379
++PRWEV A SD FQQVSF NSI+T KGG HV+ + D + K +I + KKNK
Sbjct: 1 ISPRWEVGFATSDGTFQQVSFANSISTIKGGTHVNYISDQLAKNLIAAITKKNK------ 54
Query: 380 IMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQT 439
G +KP Q+KNH+WIF+N LI NPTFD QT
Sbjct: 55 ------------------------------GATVKPAQIKNHMWIFVNALIENPTFDGQT 84
Query: 440 KENMTLQKGSFGS--------------------------------------------TCV 455
KE +TL FGS T +
Sbjct: 85 KETLTLPASKFGSRPTLSEEFMKKVQKSSIIDQVLNWAKFKADQQIKKTDGSKRTRLTGM 144
Query: 456 PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATH 515
KL DAN+AGTK++ CTLILTEGDSAKSLAV+GL VVGRD +GVFPLRGKLLNVREA H
Sbjct: 145 AKLSDANNAGTKHAEKCTLILTEGDSAKSLAVAGLAVVGRDNFGVFPLRGKLLNVREARH 204
Query: 516 KQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIH 575
QI++N EI N+ KI+GLQ++K+Y+ V + RYGRLMIMTDQD DGSHIKGL+INF+
Sbjct: 205 DQIMKNEEIQNIKKIMGLQHNKEYSNVS---SPRYGRLMIMTDQDHDGSHIKGLLINFLD 261
Query: 576 HNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
H +P+L ++P FL EF+TPI++ TK + +F+++PE+E+W E T + + KYYK
Sbjct: 262 HFYPSLHKIPEFLVEFVTPIVRVTKGSQRKNFFTIPEYEQWIESTPDSKKWTAKYYK 318
Score = 56.6 bits (135), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/25 (80%), Positives = 25/25 (100%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGW 684
+EPEWY+PI+P+VLVNGA+GIGTGW
Sbjct: 528 VEPEWYMPILPLVLVNGADGIGTGW 552
>gi|345495163|ref|XP_003427447.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein REV1-like [Nasonia
vitripennis]
Length = 1159
Score = 315 bits (807), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 187/444 (42%), Positives = 252/444 (56%), Gaps = 80/444 (18%)
Query: 1319 GGYMEAKKRKLEEQFELEANSD--SRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELK 1376
GGYM AKK KLEEQF+ A S+ + +F G+AIFVNGYT P+A+ELK
Sbjct: 18 GGYMAAKKAKLEEQFQEAAQSEFSNASTLFNGIAIFVNGYTN-----------PTADELK 66
Query: 1377 ALMMLHGGIYHHY-ESSRTTHIIASNLPHTKI---KKLKPGDKIIKPEWIVDSISAGKLL 1432
LMM HGGIYHHY S TTH+IASNLP++KI +K K + KPEWI DSI AGK+L
Sbjct: 67 RLMMAHGGIYHHYLRSQTTTHMIASNLPYSKIVAYRKAKNPLPLCKPEWITDSIKAGKVL 126
Query: 1433 DHKKYLLYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSE 1492
D + YLLY+ C+K+ + + + S + + +
Sbjct: 127 DFRNYLLYSQ----------------------CTKTQPSIFAQMTKQNKSSEASRPESAS 164
Query: 1493 AVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNA--------SNEDFL 1544
+ S +KS A ++SK VK E +S PK Q SS+ A N +FL
Sbjct: 165 DILSNATKSNVA--VDSKSEVKVAEK------MSEPKVQTSSSSEAPSVIANCTKNPEFL 216
Query: 1545 GEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIR--------KWKTSLGITED 1596
+FYN SRLHH++TMG+MFK+Y+N+LR+K DG F G++A++ K S + +
Sbjct: 217 TDFYNNSRLHHIATMGAMFKEYINDLRDKSDGKFPGLDALKHQSYVNNCKAGPSNKVDDS 276
Query: 1597 EDLEETFSDNPSP---------SEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGK 1647
+ E+ F+ + SP ++ +IMHIDMDCFFVSVG+R+HPEL+ P+AVAH K
Sbjct: 277 DSDEDLFATDESPAMNLNISSSAQKSQIIMHIDMDCFFVSVGLRNHPELRGFPIAVAHAK 336
Query: 1648 GNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFE 1707
GN +E + R+ G+ NGM +G ALK CPNLK + YDF+
Sbjct: 337 GNKQNDPSEYGSMSE--------VASCSYEARKAGVKNGMLLGKALKLCPNLKTIRYDFD 388
Query: 1708 GYKEVSYCLYNLIASLTLNIEAVS 1731
GYKEVSY LY+ +AS TL+IEAVS
Sbjct: 389 GYKEVSYTLYDTLASYTLDIEAVS 412
Score = 266 bits (681), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 145/326 (44%), Positives = 190/326 (58%), Gaps = 44/326 (13%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEMY DC+++L+ LTPL+FA+ +R I K+TGC STGFG NKLQARLATKK
Sbjct: 408 IEAVSCDEMYADCTKILKVSGLTPLEFATIIRNEIKKKTGCPVSTGFGENKLQARLATKK 467
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKP+GQ +L I F+ + + DLPGVG S KL + +TC DL+ ISL LQ E
Sbjct: 468 AKPDGQCYLKGDSIRSFIRTLKVRDLPGVGWSTSEKLQKMNVETCADLETISLYELQKEF 527
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
G KNG L+ CRG D +L EH RKSVSAEVNYGIRF+N + FLK+L+ ++ RL
Sbjct: 528 GKKNGQQLHDMCRGIDQAKLNLEHVRKSVSAEVNYGIRFENAEAAHEFLKKLSMKISDRL 587
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVR 2138
+++ KGKCITLK+M R+ EAP E KF+GHG+CD KS +L
Sbjct: 588 KKINSKGKCITLKVMFRAKEAPNEPLKFMGHGLCDAYNKSKNLI---------------- 631
Query: 2139 SAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQ 2198
AP + S I +E + + N+ P + RGIGIQ
Sbjct: 632 ---APTDDSVI------------------------ITREAIALWNQFSESPQDARGIGIQ 664
Query: 2199 VSKLEH-QSKTLATIDTFFTNKGKPP 2223
++KLE +SKT + F ++ K P
Sbjct: 665 ITKLESLKSKTAGSTILKFIDRMKAP 690
Score = 59.7 bits (143), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 9/80 (11%)
Query: 1172 ELREGVNISAPKPQASSTKNA--------SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQ 1223
E++ +S PK Q SS+ A N +FL +FYN SRLHH++TMG+MFK+Y+N
Sbjct: 182 EVKVAEKMSEPKVQTSSSSEAPSVIANCTKNPEFLTDFYNNSRLHHIATMGAMFKEYIND 241
Query: 1224 LISLQQDKQLPAIQVISIRS 1243
L + D + P + + +S
Sbjct: 242 LRD-KSDGKFPGLDALKHQS 260
>gi|307189325|gb|EFN73756.1| DNA repair protein REV1 [Camponotus floridanus]
Length = 1151
Score = 315 bits (806), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 185/427 (43%), Positives = 253/427 (59%), Gaps = 46/427 (10%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSR--GGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELK 1376
GGYM AKK KLEEQF AN + + +F+G+A+FVNGYT P+++EL+
Sbjct: 19 GGYMAAKKAKLEEQFRDTANKEFKEPSKLFEGIAVFVNGYTD-----------PTSDELR 67
Query: 1377 ALMMLHGGIYHHYESSR-TTHIIASNLPHTKIKKLKPGDK---IIKPEWIVDSISAGKLL 1432
LMM+HGG+YHHY + TTHIIASNLP++KI + I KP+WI+DSI+AGK+L
Sbjct: 68 RLMMMHGGLYHHYMRPKITTHIIASNLPYSKIIMYRKSQNPIPICKPQWIIDSIAAGKVL 127
Query: 1433 DHKKYLLYTG-TDAKPLT--KLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEES 1489
+ + YLLY+ T+ + L KL K +N + + +E S + +
Sbjct: 128 NFQNYLLYSNNTNVQSLLTYKLNNKKIEDNANSTMHKEQDIEQSKASGI-------VINN 180
Query: 1490 KSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYN 1549
++ N SK A N T+ T +S S K A ST++A +FL FY+
Sbjct: 181 ETNINNQNISKHNAINDALKHDTISTHQS-------SNIKTNAQSTRDA---EFLSTFYS 230
Query: 1550 KSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLE-----ETFS 1604
SRLH+++TMG+ FK YVNELR+K DG+F G++ + K K + I D E E +
Sbjct: 231 NSRLHYIATMGTTFKDYVNELRDKSDGLFPGLDRLIKLKEARDILTSTDCESDPEDEIYF 290
Query: 1605 DNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFD 1664
+ + E +IMHIDMDCFFVSVGIR+ PEL+D+P+AV H KGN+ D + EF
Sbjct: 291 TDKVKRKREVIIMHIDMDCFFVSVGIRNRPELRDQPIAVTHAKGNT--FSANYDGKEEFG 348
Query: 1665 IYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLT 1724
+ + R+ G+ NGMF+G ALK CPNLK + YDFEGYKEVSY LY+ +AS T
Sbjct: 349 SLSE--VASCSYAARKTGVKNGMFLGEALKLCPNLKTIQYDFEGYKEVSYILYDTVASYT 406
Query: 1725 LNIEAVS 1731
L+IEAVS
Sbjct: 407 LDIEAVS 413
Score = 273 bits (699), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 141/305 (46%), Positives = 187/305 (61%), Gaps = 43/305 (14%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEMY DC+++L+ L+PL+FA+ +R+ I ++T C STGFG+N+LQARLAT+K
Sbjct: 409 IEAVSCDEMYADCTKILEASGLSPLEFATIIRKEIKQKTNCPVSTGFGNNRLQARLATRK 468
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKP+ QF+L+ Q + M + DLPGVG + +KL + TC DLQ +SL LQ E
Sbjct: 469 AKPDNQFYLSNQNVETHMRTLDTRDLPGVGGTTTYKLRKMNVHTCEDLQKVSLSVLQKEF 528
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
G K G L+K CRG DD +L EH RKSVSAEVNYGIRF+NN + FL +L+ EV RL
Sbjct: 529 GKKMGEQLHKMCRGLDDTKLNLEHIRKSVSAEVNYGIRFRNNGDAVDFLSKLSTEVCDRL 588
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVR 2138
V+ KG+CITLKLMVR+ EAP E +KF+GHG C+YITK
Sbjct: 589 IAVRAKGRCITLKLMVRAEEAPVETAKFMGHGPCNYITK--------------------- 627
Query: 2139 SAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQ 2198
S +L + + I KEV+ I N+L + P ++RGIGIQ
Sbjct: 628 ----------------------SKNLIAAVDDVNIIRKEVVNIWNQLHLTPEDMRGIGIQ 665
Query: 2199 VSKLE 2203
+S+LE
Sbjct: 666 ISRLE 670
Score = 48.9 bits (115), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 45/117 (38%)
Query: 1180 SAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQLISLQQDKQLPAIQVI 1239
S K A ST++A +FL FY+ SRLH+++TMG+ FK YV
Sbjct: 210 SNIKTNAQSTRDA---EFLSTFYSNSRLHYIATMGTTFKDYV------------------ 248
Query: 1240 SIRSPRARPPRRSSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLE 1296
NELR+K DG+F G++ + K K + I D E
Sbjct: 249 ------------------------NELRDKSDGLFPGLDRLIKLKEARDILTSTDCE 281
>gi|209879055|ref|XP_002140968.1| DNA gyrase/topoisomerase IV, A subunit family protein
[Cryptosporidium muris RN66]
gi|209556574|gb|EEA06619.1| DNA gyrase/topoisomerase IV, A subunit family protein
[Cryptosporidium muris RN66]
Length = 1645
Score = 315 bits (806), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 175/401 (43%), Positives = 230/401 (57%), Gaps = 96/401 (23%)
Query: 315 IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKD 374
IIYE+ +P+WE+ I+ SD FQ VSFVNSI T +GG H+ ++D ++ I++ V+ KNK
Sbjct: 408 IIYED-HPKWEIVISESDGQFQHVSFVNSICTIRGGTHISYILDPLIAAILKRVQTKNK- 465
Query: 375 LGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPT 434
GG+ +K VK+HIWIFI CLIVNP+
Sbjct: 466 ----------------------------------GGIDIKNHHVKSHIWIFIRCLIVNPS 491
Query: 435 FDSQTKENMTLQKGSFGSTC---------------------------------------- 454
FDSQTKE +T + FGSTC
Sbjct: 492 FDSQTKETLTTKVAKFGSTCQLSEKTINSVVKSPIVENVLMWAQMRQSMELKKKMKTNQK 551
Query: 455 ---------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRG 505
+PKLEDAN+AG NS CTLILTEGDSAK+ ++GL +VGRD YGVFPL+G
Sbjct: 552 NSLSSRLLGIPKLEDANEAGGPNSRKCTLILTEGDSAKTSCLAGLSIVGRDYYGVFPLKG 611
Query: 506 KLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSH 565
KLLNVREA+ KQ + N EI N++KILG+ KY LRYG LM+MTDQD DGSH
Sbjct: 612 KLLNVREASFKQQIGNIEIQNILKILGISIGTKYEN--GPINLRYGSLMLMTDQDHDGSH 669
Query: 566 IKGLIINFIHHNWPTLLRL-PFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHT 624
IKGLIIN IH+ WP+L+ FL++F+TPI+KA K +ELSF++L E+++W++E +N H
Sbjct: 670 IKGLIINLIHYYWPSLVHFNGFLKQFVTPIVKAKKGNQELSFFTLVEYDKWRKE-SNPHG 728
Query: 625 YKIKYYKVVYVTGVLLFKMNLHKVTSDSISMFIGRIEPEWY 665
+KIKYYK + + L FK + + S IE +WY
Sbjct: 729 WKIKYYKGLGTSTDLEFKEYFTNIENHS-------IEFDWY 762
Score = 248 bits (633), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 134/293 (45%), Positives = 179/293 (61%), Gaps = 37/293 (12%)
Query: 17 NGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERR 76
NG KK+ +VE+ YQKK+Q+EHILLRPDTYIGS+E +++W+ + N M +
Sbjct: 14 NGKVMKKRAK----TVEERYQKKTQIEHILLRPDTYIGSIEYHEQSLWVWDEINNKMVYK 69
Query: 77 EITYVPGLYKIFDEILVNACDNKQRDPKM------NCIKITVNQETNTISVWNNGKGIPV 130
I YVPGLYKIFDEILVNA D K R+ M CIK+ +++ IS++N+G GIPV
Sbjct: 70 LINYVPGLYKIFDEILVNAADVKAREISMINNERCTCIKVDISKSNKRISIFNDGDGIPV 129
Query: 131 VEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGR 190
HK+ ++VP +IF GHLLTS NY+D ED+VTGGR
Sbjct: 130 EIHKEYGVYVPELIF-------------------------GHLLTSDNYDDNEDRVTGGR 164
Query: 191 NGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPD 250
NG+GAKL NIFS++F VE + S + FK W DNMSK T + + + + KI+F PD
Sbjct: 165 NGFGAKLTNIFSTEFCVECADSNSCRLFKMTWFDNMSKKTDAIVTNYNGKSYVKISFKPD 224
Query: 251 LTKF-KMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY 302
L +F M D D++ L+ +R YD A T VKV+LNG LP+K+F+ Y LY
Sbjct: 225 LDRFANMREFDGDILSLLYKRVYDIAG-TSGVKVYLNGSLLPIKDFKSYTLLY 276
Score = 104 bits (260), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 57/65 (87%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP +Y+PIIPMVLVNGA+GIGTGW +PN+NP++I++N+KR +RG+ +PM PWY++
Sbjct: 948 QIEPLFYVPIIPMVLVNGADGIGTGWSCSVPNYNPKDIINNLKRALRGDIMMPMTPWYRS 1007
Query: 719 FKGEI 723
FKG++
Sbjct: 1008 FKGKV 1012
Score = 49.7 bits (117), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 846 EDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
+D K++DYLL + WSLT ER L + + K+ E N LKK + DLW+ +LD L
Sbjct: 1303 DDEIKEFDYLLSLPLWSLTTERMELLKDELNKKIAEYNNLKKTSIEDLWNKELDEL 1358
>gi|66357004|ref|XP_625680.1| DNA topoisomerase II [Cryptosporidium parvum Iowa II]
gi|46226680|gb|EAK87659.1| DNA topoisomerase II [Cryptosporidium parvum Iowa II]
Length = 1797
Score = 314 bits (805), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 175/391 (44%), Positives = 225/391 (57%), Gaps = 90/391 (23%)
Query: 315 IIYENVNPRWEVAIAPSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNK 373
IIYE+V P+WE+ I+ SD G FQ VSFVNSI T KGG H+ V+D ++ I++ V+ KNK
Sbjct: 409 IIYESV-PKWEIVISESDGGQFQHVSFVNSICTIKGGTHISYVLDPLINAILKKVQTKNK 467
Query: 374 DLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNP 433
GGM +K VKNHIWIFI CLIVNP
Sbjct: 468 -----------------------------------GGMDVKSNHVKNHIWIFIKCLIVNP 492
Query: 434 TFDSQTKENMTLQKGSFGSTC--------------------------------------- 454
+FDSQTKE +T + FGS C
Sbjct: 493 SFDSQTKETLTTKVSKFGSVCTLSEKTINSVVKSSIVENVLMWAQLKQSMELKKKMKSNQ 552
Query: 455 ----------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLR 504
+PKLEDAN+AG +S CTLILTEGDSAK+ ++GL +VGRD +GVFPLR
Sbjct: 553 KNTVTSRLLGIPKLEDANEAGGPHSKKCTLILTEGDSAKTSCLAGLSIVGRDYFGVFPLR 612
Query: 505 GKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGS 564
GKLLNVREA+ KQ + N EI N++KILGL +KY LRYG LM+MTDQD DGS
Sbjct: 613 GKLLNVREASFKQQIGNVEIQNILKILGLGIGQKYDN--GPVNLRYGSLMLMTDQDHDGS 670
Query: 565 HIKGLIINFIHHNWPTLLRL-PFLEEFITPIIKATKAREELSFYSLPEFEEW-KEETTNW 622
HIKGLIIN IH+ WP+L+ FL++F+TPI+KA K E+SF++L E+E+W K ++N
Sbjct: 671 HIKGLIINLIHYYWPSLIHFRGFLKQFVTPIVKAKKGSNEISFFTLYEYEQWRKNNSSNL 730
Query: 623 HTYKIKYYKVVYVTGVLLFKMNLHKVTSDSI 653
+ ++ KYYK + + L FK K+ + SI
Sbjct: 731 NGWRFKYYKGLGTSTDLEFKEYFTKIENHSI 761
Score = 246 bits (629), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 132/294 (44%), Positives = 177/294 (60%), Gaps = 37/294 (12%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
S K +K +VE+ YQKK+Q+EHILLRPDTYIGS E + +W+ + M + I
Sbjct: 21 SKPKMVNKSKKTVEERYQKKTQIEHILLRPDTYIGSTEFHEQALWVWDDSNMKMVYKTIN 80
Query: 80 YVPGLYKIFDEILVNACDNKQRD---------PKMNCIKITVNQETNTISVWNNGKGIPV 130
YVPGLYKIFDEILVNA D K R+ K CIK+ +N+E I+V+N+G+GIP+
Sbjct: 81 YVPGLYKIFDEILVNAADVKAREISTKNNHIFEKCTCIKVEINREKKEITVFNDGEGIPI 140
Query: 131 VEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGR 190
H++ +++VP +IFGHLLTS NY+D ED+VTGGR
Sbjct: 141 EIHREHQVYVPELIFGHLLTSDNYDD-------------------------NEDRVTGGR 175
Query: 191 NGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSG-SKDDFTKITFTP 249
NG+GAKL NIFS +F VE + + FK W DNMSK + IK S + KITF P
Sbjct: 176 NGFGAKLTNIFSKEFKVECGDNNTGRIFKMTWYDNMSKKSEENIKENYSGKSYVKITFKP 235
Query: 250 DLTKF-KMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY 302
DL++F M D D++ L+ +R YD + T VKV+LNG +P+K+F+ Y LY
Sbjct: 236 DLSRFGNMKDFDDDIISLLNKRVYDISG-TSGVKVYLNGSLIPIKDFKSYTLLY 288
Score = 106 bits (264), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 57/65 (87%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP +Y+PIIPM+LVNG +GIGTGW + +PN+NP++I+ N+KRM++GE +PM PWYK+
Sbjct: 952 QIEPLYYVPIIPMILVNGTDGIGTGWSSSVPNYNPKDIIMNLKRMLKGEMMVPMTPWYKS 1011
Query: 719 FKGEI 723
FKG+I
Sbjct: 1012 FKGKI 1016
>gi|83317979|ref|XP_731396.1| DNA topoisomerase II [Plasmodium yoelii yoelii 17XNL]
gi|23491424|gb|EAA22961.1| DNA topoisomerase II, putative [Plasmodium yoelii yoelii]
Length = 1489
Score = 314 bits (805), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/359 (46%), Positives = 214/359 (59%), Gaps = 88/359 (24%)
Query: 323 RWEVAIAPSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RWE+ I+ +D FQQVSFVNSI TTKGG HV +VD ++ + + KNK
Sbjct: 336 RWEIVISKTDGSQFQQVSFVNSICTTKGGTHVSYIVDQLLNSLSKKANAKNK-------- 387
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
GGM +K ++NH+W+F+NCLIVNPTFDSQTKE
Sbjct: 388 ---------------------------GGMEIKAGHIRNHLWVFVNCLIVNPTFDSQTKE 420
Query: 442 NMTLQKGSFGSTC----------------------------------------------- 454
+T ++ FGS C
Sbjct: 421 TLTTKQAKFGSKCTLTDKTINNVLKSSILSNILLWAQAKAQVELRKKMKAGSSKARERII 480
Query: 455 -VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREA 513
+PKLEDANDAG+K S +CTLILTEGDSAK+ ++GL +VGRD+YGVFPL+GKLLNVR+A
Sbjct: 481 GIPKLEDANDAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDRYGVFPLKGKLLNVRDA 540
Query: 514 THKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINF 573
+ KQ+++N EI N+ KI+GL + K +D+K LRYG LMIMTDQD DGSHIKGL+IN
Sbjct: 541 SFKQLMDNKEIQNIFKIMGLDITDK--NKQDIKGLRYGSLMIMTDQDYDGSHIKGLLINM 598
Query: 574 IHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
IH WP+LL+ FL EF+TPI+K K +ELSF+++ E+E+WK E TN +KIKYYK
Sbjct: 599 IHKFWPSLLKHKGFLCEFVTPIVKVQKGNQELSFFTIAEYEQWK-ENTNLVGWKIKYYK 656
Score = 279 bits (713), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 142/277 (51%), Positives = 185/277 (66%), Gaps = 31/277 (11%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E+ YQKKSQ+EHILLRPDTYIGSVE T+ +W+ N+E + M ++ ITYVPGLYKIFDE
Sbjct: 6 TIEERYQKKSQIEHILLRPDTYIGSVEMHTQLLWIWNKEKSRMVQKNITYVPGLYKIFDE 65
Query: 91 ILVNACDNKQRDPK-----MNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIF 145
I+VNA D K R+ + M CIKI +N+E ISV+N+G+GIPV HK+ ++VP MIF
Sbjct: 66 IIVNAADVKAREKEKSENPMTCIKIEINREQKKISVYNDGEGIPVDIHKEMNIYVPHMIF 125
Query: 146 GHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF 205
G LLTS NY+D ED++TGGRNG+GAKL NIFS +F
Sbjct: 126 -------------------------GELLTSDNYDDAEDRITGGRNGFGAKLTNIFSKEF 160
Query: 206 VVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVD 265
V+ S KK FK W NMSK + P IK+ + D+ K+TF PDL KF M+ LD D+
Sbjct: 161 TVQCGDSSRKKEFKMTWFQNMSKFSDPHIKNYNGKDYVKVTFKPDLDKFGMSELDDDIEC 220
Query: 266 LITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY 302
L+ +R YD A T +V+V+LNG +LPVK+F+ YV LY
Sbjct: 221 LLHKRVYDLAG-TCNVRVYLNGTRLPVKDFKSYVDLY 256
Score = 128 bits (322), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 97/158 (61%), Gaps = 14/158 (8%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP++YIP+IP +LVNG EGIGTG+ + IPN+N ++I++NIK+ I E +PM PWYK+
Sbjct: 865 KIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIINNIKKYIDKEPLVPMVPWYKD 924
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDEVHPG 778
FKG I+ G S + G I +DD+ LEITEL + +WT DYK+ L+ LL + +
Sbjct: 925 FKGRIEPNGKSGYETIGIINKIDDETLEITELPIKRWTQDYKEFLEELLTDEKNQLIIDY 984
Query: 779 PGRKSHP--------RPIAPKSYKIDDDSEEEEIEEVF 808
SH PI K +EEE +E+VF
Sbjct: 985 IDNSSHEDVCFTIKMDPIKLKR------AEEEGLEKVF 1016
Score = 45.8 bits (107), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
KDY+YLL M +SLT+E+ ELL + +K EL ILK +W D++ + E
Sbjct: 1148 KDYNYLLNMPIFSLTLEKVEELLSQLKEKEQELEILKSITVETMWLKDIEKVEE 1201
>gi|68062299|ref|XP_673155.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56490797|emb|CAI02100.1| hypothetical protein PB300551.00.0 [Plasmodium berghei]
Length = 426
Score = 314 bits (804), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 166/359 (46%), Positives = 214/359 (59%), Gaps = 88/359 (24%)
Query: 323 RWEVAIAPSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RWE+ I+ +D FQQVSFVNSI TTKGG HV +VD ++ + + KNK
Sbjct: 22 RWEIVISKTDGSQFQQVSFVNSICTTKGGTHVSYIVDQLLNSLSKKANAKNK-------- 73
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
GGM +K ++NH+W+F+NCLIVNPTFDSQTKE
Sbjct: 74 ---------------------------GGMEIKSGHIRNHLWVFVNCLIVNPTFDSQTKE 106
Query: 442 NMTLQKGSFGSTCV---------------------------------------------- 455
+T ++ FGS C+
Sbjct: 107 TLTTKQSKFGSKCILTDKTINNVLKSSILSNILLWAQAKAQVELRKKMKAGSSKARERII 166
Query: 456 --PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREA 513
PKLEDANDAG+K S +CTLILTEGDSAK+ ++GL +VGRD+YGVFPL+GKLLNVR+A
Sbjct: 167 GIPKLEDANDAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDRYGVFPLKGKLLNVRDA 226
Query: 514 THKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINF 573
+ KQ+++N EI N+ KI+GL + K +D+K LRYG LMIMTDQD DGSHIKGL+IN
Sbjct: 227 SFKQLMDNKEIQNIFKIMGLDITDK--NKQDIKGLRYGSLMIMTDQDYDGSHIKGLLINM 284
Query: 574 IHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
IH WP+LL+ FL EF+TPI+K K +ELSF+++ E+E+WK E TN +KIKYYK
Sbjct: 285 IHKFWPSLLKHKGFLCEFVTPIVKVQKGNQELSFFTIAEYEQWK-ENTNLVGWKIKYYK 342
>gi|37778802|gb|AAP31847.1| topoisomerase II [Nectria haematococca mpVI]
Length = 415
Score = 313 bits (801), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 189/454 (41%), Positives = 243/454 (53%), Gaps = 99/454 (21%)
Query: 220 QVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKM-TSLDKDMVDLITRRAYDAAAST 278
Q W DNM K+ +I S DF +ITF PD +F M +D D+ L+ RR YD A +
Sbjct: 1 QPWTDNMQKMQKAKITSSKTADFVRITFKPDYKRFGMEDGIDDDLERLLYRRVYDMAGTV 60
Query: 279 KDVKVFLNGEKLPVKNFQDYVKLYT-----DRQDEDGD----PVKIIYENVNPRWEVAIA 329
+ VKV LNGE L +K+F+ Y LY +R DE+G V++ + +PRWEV A
Sbjct: 61 RGVKVHLNGEVLKLKDFKGYCDLYAKSIAKERMDEEGGTPTCSVEMDKDKGHPRWEVGFA 120
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNN 389
SD FQQVSFVNSIATT GG HVD + + +
Sbjct: 121 VSDGTFQQVSFVNSIATTSGGSHVDYIANQVT---------------------------- 152
Query: 390 VKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
A L + + G LK +KNHI+IF+NCLI NP F+SQTKE+MT +
Sbjct: 153 --------AYLLKALNKKKKGHTLKQSHLKNHIFIFVNCLIDNPAFNSQTKEHMTTKTSQ 204
Query: 450 FGSTCV-------------------------------------------PKLEDANDAGT 466
FGS C KL +AN AGT
Sbjct: 205 FGSKCQLGEDFLKKVAKSEAIQNIMDFAERKADKMLAKSDGNKRSRVSNAKLVEANLAGT 264
Query: 467 KNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINN 526
+ +CTLILTEGDSAK LAVSG ++ D+ GVFPLRGKLLNVR+A+ QI +N EI N
Sbjct: 265 RRGHECTLILTEGDSAKGLAVSGRAILDPDRIGVFPLRGKLLNVRDASVDQITKNQEIQN 324
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP- 585
+ + LGL++ + YT D K+LRYG LMIM DQD DGSHIKGL+INF+ +P+LL++P
Sbjct: 325 IKQFLGLKHKQVYT---DTKSLRYGHLMIMADQDHDGSHIKGLLINFLQVQFPSLLKVPD 381
Query: 586 FLEEFITPIIKA------TKAREELSFYSLPEFE 613
F EFITPI+K K SF++ E+E
Sbjct: 382 FFREFITPIVKVWQGPNPKKPLRLKSFFTQLEYE 415
>gi|389585649|dbj|GAB68379.1| DNA topoisomerase II [Plasmodium cynomolgi strain B]
Length = 1506
Score = 312 bits (799), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 165/359 (45%), Positives = 214/359 (59%), Gaps = 88/359 (24%)
Query: 323 RWEVAIAPSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RWE+ ++ +D FQQVSFVNSI TTKGG HV+ +V+ ++ + + KNK
Sbjct: 345 RWEIVVSKTDGSQFQQVSFVNSICTTKGGSHVNYIVEQLLNSLSKKANAKNK-------- 396
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
GGM +K +KNH+W+F+NCLIVNPTFDSQTKE
Sbjct: 397 ---------------------------GGMEIKSGHIKNHLWVFVNCLIVNPTFDSQTKE 429
Query: 442 NMTLQKGSFGSTCV---------------------------------------------- 455
+T + FGS C+
Sbjct: 430 TLTTKPVKFGSKCILSDKTINSVLKSPILSNILLWAQAKAQVELRKKMKAGSSKARERII 489
Query: 456 --PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREA 513
PKLEDANDAG+K S +CTLILTEGDSAK+ ++GL +VGRD+YGVFPL+GKLLNVR+A
Sbjct: 490 GIPKLEDANDAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDRYGVFPLKGKLLNVRDA 549
Query: 514 THKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINF 573
+ KQ+++N EI N+ KI+GL + K ED+K LRYG LMIMTDQD DGSHIKGL+IN
Sbjct: 550 SFKQLMDNKEIQNIFKIMGLDITDK--NKEDIKGLRYGSLMIMTDQDYDGSHIKGLLINM 607
Query: 574 IHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
IH WP+LL+ FL EF+TPI+K K +E SF+++ E+E+WK E+TN +KIKYYK
Sbjct: 608 IHKFWPSLLKHKGFLSEFVTPIVKVQKGNQEYSFFTIAEYEQWK-ESTNLVGWKIKYYK 665
Score = 287 bits (734), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 144/277 (51%), Positives = 186/277 (67%), Gaps = 31/277 (11%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
S+E+ YQKKSQ+EHILLRPDTYIGSVE T+ +W+ N+E N M ++ ITYVPGLYKIFDE
Sbjct: 6 SIEERYQKKSQIEHILLRPDTYIGSVEMHTQLLWIWNKERNRMIQKNITYVPGLYKIFDE 65
Query: 91 ILVNACDNKQRDPK-----MNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIF 145
I+VNA D K R+ + M CIKI +N+E ISV+N+G+GIPV HK+ ++VP MIF
Sbjct: 66 IIVNAADVKAREKEKSENPMTCIKIEINKEQKKISVYNDGEGIPVDIHKELNIYVPHMIF 125
Query: 146 GHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF 205
G LLTS NY+D ED++TGGRNG+GAKL NIFS +F
Sbjct: 126 -------------------------GELLTSDNYDDAEDRITGGRNGFGAKLTNIFSKEF 160
Query: 206 VVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVD 265
+V+ S KK FK VW DNMSK + P IK+ + D+ K+TF PDL KF MT +D D+
Sbjct: 161 IVQCGDSSRKKEFKMVWTDNMSKFSDPHIKNYNGKDYVKVTFKPDLAKFGMTEIDDDIES 220
Query: 266 LITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY 302
L+ +R YD A T V+V+LNG +L +K+F+ YV LY
Sbjct: 221 LLCKRVYDLAG-TCSVRVYLNGNRLAIKDFKSYVDLY 256
Score = 130 bits (327), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 81/109 (74%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP++YIP+IP +LVNG EGIGTG+ + IPN+N ++I++NIKR I E+ +PM PWYK+
Sbjct: 874 KIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIIENIKRYINKEELIPMIPWYKD 933
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
FKG I+ G + + G I +DD+ LEI EL + KWT DYK+ L+ LL
Sbjct: 934 FKGRIESNGKTGYETIGIIHKIDDETLEINELPIKKWTQDYKEFLEELL 982
Score = 47.8 bits (112), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
KDYDYLL M +SLT+E+ ELL + +K EL ILK +W D++ + E
Sbjct: 1157 KDYDYLLSMPIFSLTLEKVEELLAQLKEKERELEILKNITVETMWLKDIEKVEE 1210
>gi|156101890|ref|XP_001616638.1| DNA topoisomerase II [Plasmodium vivax Sal-1]
gi|148805512|gb|EDL46911.1| DNA topoisomerase II, putative [Plasmodium vivax]
Length = 1502
Score = 311 bits (798), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 171/385 (44%), Positives = 224/385 (58%), Gaps = 89/385 (23%)
Query: 323 RWEVAIAPSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RWE+ ++ +D FQQVSFVNSI TTKGG HV+ +V+ ++ + + KNK
Sbjct: 341 RWEIVVSKTDGSQFQQVSFVNSICTTKGGSHVNYIVEQLLNSLSKKANAKNK-------- 392
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
GGM +K +KNH+W+F+NCLIVNPTFDSQTKE
Sbjct: 393 ---------------------------GGMEIKSGHIKNHLWVFVNCLIVNPTFDSQTKE 425
Query: 442 NMTLQKGSFGSTCV---------------------------------------------- 455
+T + FGS C+
Sbjct: 426 TLTTKPVKFGSKCILTDKTINSVLKSPILSNILLWAQAKAQVELRKKMKAGSSKARERII 485
Query: 456 --PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREA 513
PKLEDANDAG+K S +CTLILTEGDSAK+ ++GL +VGRDKYGVFPL+GKLLNVR+A
Sbjct: 486 GIPKLEDANDAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDKYGVFPLKGKLLNVRDA 545
Query: 514 THKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINF 573
+ KQ+++N EI N+ KI+GL + K ED+K LRYG LMIMTDQD DGSHIKGL+IN
Sbjct: 546 SFKQLMDNKEIQNIFKIMGLDITDK--NKEDIKGLRYGSLMIMTDQDYDGSHIKGLLINM 603
Query: 574 IHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYKV 632
IH WP+LL+ FL EF+TPI+K K +E SF+++ E+E+WK E+TN +KIKYYK
Sbjct: 604 IHKFWPSLLKHKGFLSEFVTPIVKVQKGNQEHSFFTIAEYEQWK-ESTNLVGWKIKYYKG 662
Query: 633 VYVTGVLLFKMNLHKVTSDSISMFI 657
+ + FK + + I MF+
Sbjct: 663 LGTSTDKEFKQYFSDIKNHKI-MFL 686
Score = 285 bits (730), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 143/277 (51%), Positives = 186/277 (67%), Gaps = 31/277 (11%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
S+E+ YQKKSQ+EHILLRPDTYIGSVE T+ +W+ N+E N M ++ ITYVPGLYKIFDE
Sbjct: 6 SIEERYQKKSQIEHILLRPDTYIGSVEMHTQLLWVWNKERNRMVQKNITYVPGLYKIFDE 65
Query: 91 ILVNACDNKQRDPK-----MNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIF 145
I+VNA D K R+ + M CIKI +N++ ISV+N+G+GIPV HK+ ++VP MIF
Sbjct: 66 IIVNAADVKAREKEKSENPMTCIKIEINKDQKKISVYNDGEGIPVDIHKEMNIYVPHMIF 125
Query: 146 GHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF 205
G LLTS NY+D ED++TGGRNG+GAKL NIFS +F
Sbjct: 126 -------------------------GELLTSDNYDDAEDRITGGRNGFGAKLTNIFSKEF 160
Query: 206 VVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVD 265
VV+ S KK FK VW DNMS+ + P IK+ + D+ K+TF PDL KF MT +D D+
Sbjct: 161 VVQCGDSSRKKEFKMVWTDNMSRFSEPHIKNYNGKDYVKVTFKPDLAKFGMTEMDDDIES 220
Query: 266 LITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY 302
L+ +R YD A T V+V+LNG +L +K+F+ YV LY
Sbjct: 221 LLCKRVYDLAG-TCSVRVYLNGNRLAIKDFKSYVDLY 256
Score = 130 bits (326), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 80/109 (73%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP++YIP+IP +LVNG EGIGTG+ + IPN+N ++I++NIKR I E LPM PWYK+
Sbjct: 870 KIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIIENIKRYINKEPLLPMIPWYKD 929
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
FKG I+ G + + G I +DD+ LEI EL + KWT DYK+ L+ LL
Sbjct: 930 FKGRIESNGKTGYETIGIIHKIDDETLEINELPIKKWTQDYKEFLEELL 978
Score = 48.5 bits (114), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
KDYDYLL M +SLT+E+ ELL + +K EL ILK +W D++ + E
Sbjct: 1153 KDYDYLLSMPIFSLTLEKVEELLAQHKEKEKELEILKNITVETMWLKDIEKVEE 1206
>gi|124809097|ref|XP_001348490.1| DNA topoisomerase II, putative [Plasmodium falciparum 3D7]
gi|23497385|gb|AAN36929.1|AE014821_16 DNA topoisomerase II, putative [Plasmodium falciparum 3D7]
Length = 1472
Score = 311 bits (798), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 173/399 (43%), Positives = 230/399 (57%), Gaps = 90/399 (22%)
Query: 309 DGDPVKIIYENVNPRWEVAIAPSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEV 367
D D + I+E + RWE+ ++ SD FQQVSFVNSI TTKGG HV+ +V+ ++ + +
Sbjct: 317 DEDEIVKIHEKQH-RWEIVVSKSDGSQFQQVSFVNSICTTKGGSHVNYIVEQLLSSLSKK 375
Query: 368 VKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFIN 427
KNK GGM +K ++NH+W+F+N
Sbjct: 376 ANAKNK-----------------------------------GGMEIKSGHIRNHLWVFVN 400
Query: 428 CLIVNPTFDSQTKENMTLQKGSFGSTCV-------------------------------- 455
CLIVNPTFDSQTKE +T + FGS C+
Sbjct: 401 CLIVNPTFDSQTKETLTTKPVKFGSKCILSDKTINNVLKSPILSNILLWAQAKAQVELKK 460
Query: 456 ----------------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYG 499
PKLEDANDAG+K S +CTLILTEGDSAK+ ++GL +VGRDKYG
Sbjct: 461 KMKAGSSKARERIIGIPKLEDANDAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDKYG 520
Query: 500 VFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQ 559
VFPL+GKLLNVR+A+ KQ+++N EI N+ +I+GL + K +D+K LRYG LMIMTDQ
Sbjct: 521 VFPLKGKLLNVRDASFKQLMDNKEIQNIFRIMGLDITDK--NKDDIKGLRYGSLMIMTDQ 578
Query: 560 DQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEE 618
D DGSHIKGL+IN IH WP+LL+ FL EF+TPI+K K +E SF+++ E+E+WK E
Sbjct: 579 DYDGSHIKGLLINMIHKFWPSLLKHKGFLSEFVTPIVKVQKGSQEYSFFTIAEYEQWK-E 637
Query: 619 TTNWHTYKIKYYKVVYVTGVLLFKMNLHKVTSDSISMFI 657
TN +KIKYYK + + FK + + I MF+
Sbjct: 638 NTNLLGWKIKYYKGLGTSTDREFKQYFSDIKNHKI-MFL 675
Score = 286 bits (731), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 144/281 (51%), Positives = 187/281 (66%), Gaps = 31/281 (11%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYK 86
A ++E+ YQKKSQ+EHILLRPDTYIGSVE T+ +W+ N+E N M ++ ITYVPGLYK
Sbjct: 2 AKNKTIEERYQKKSQIEHILLRPDTYIGSVEMHTQLLWVWNKEKNRMVQKNITYVPGLYK 61
Query: 87 IFDEILVNACDNKQRDPK-----MNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVP 141
IFDEI+VNA D K R+ + M CIKI +N+E ISV+N+G+GIPV HK+ ++VP
Sbjct: 62 IFDEIIVNAADVKAREKEKSENPMTCIKIEINKENKRISVYNDGEGIPVDIHKEMNIYVP 121
Query: 142 TMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIF 201
MIF G LLTS NY+D ED++TGGRNG+GAKL NIF
Sbjct: 122 HMIF-------------------------GELLTSDNYDDAEDRITGGRNGFGAKLTNIF 156
Query: 202 SSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDK 261
S +F+V+ S KK FK W DNMSK + P IK+ + D+ K+TF PDL KF MT +D
Sbjct: 157 SKEFIVQCGDSSRKKEFKMTWSDNMSKFSEPHIKNYNGKDYVKVTFKPDLNKFGMTEMDD 216
Query: 262 DMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY 302
D+ L+ +R YD A T V+V+LNG++L VK+F+ YV LY
Sbjct: 217 DIESLLFKRVYDLAG-TCSVRVYLNGQRLAVKDFKSYVDLY 256
Score = 133 bits (334), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 98/154 (63%), Gaps = 6/154 (3%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP++YIP+IP +LVNG EGIGTG+ + IPN+N ++I+DNIKR I E +PM PWYK+
Sbjct: 859 KIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIIDNIKRYINKEPLIPMVPWYKD 918
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDEVHPG 778
FKG I+ G + + G I +D+D LEITEL + KWT DYK+ L+ LL + +
Sbjct: 919 FKGRIESNGKTGYETIGIINKIDNDTLEITELPIKKWTQDYKEFLEELLTDEKHQLILDY 978
Query: 779 PGRKSHPRPIAPKSYKID----DDSEEEEIEEVF 808
SH + K+D +EEE +E+VF
Sbjct: 979 IDNSSHEDICF--TIKMDPAKLQKAEEEGLEKVF 1010
Score = 44.7 bits (104), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
KDYDYLL M +SLT+E+ +LL + +K EL IL+ +W D++ + E
Sbjct: 1142 KDYDYLLSMPIFSLTLEKVEDLLTQLKEKERELEILRNITVETMWLKDIEKVEE 1195
>gi|322795096|gb|EFZ17938.1| hypothetical protein SINV_07182 [Solenopsis invicta]
Length = 1042
Score = 311 bits (798), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 190/432 (43%), Positives = 254/432 (58%), Gaps = 51/432 (11%)
Query: 1319 GGYMEAKKRKLEEQFELEAN-----SDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAE 1373
GGYM AKK KLEEQF A S +F+G+AIFVNGYT+ P+++
Sbjct: 18 GGYMAAKKAKLEEQFRDTAKKEFKESKESSQLFKGIAIFVNGYTE-----------PTSD 66
Query: 1374 ELKALMMLHGGIYHHYESSR-TTHIIASNLPHTKIKKLKPGDK---IIKPEWIVDSISAG 1429
EL+ LMM+HGGIYHHY + TTHIIASNLP++KI K I KP+WI+DSI+AG
Sbjct: 67 ELRRLMMMHGGIYHHYMRPKITTHIIASNLPYSKIMLYKKSQNPIPICKPQWIIDSIAAG 126
Query: 1430 KLLDHKKYLLYTG-TDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEE 1488
+L+ + YLLY+ TD +P Q +Y N + SK +H + DN E
Sbjct: 127 SVLNFQNYLLYSNSTDVQP-----QLAYKLNNK----SKDSTNFVAH-----NKPDNIIE 172
Query: 1489 SKSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFY 1548
+VN+ K++ SK V SK N + +S ++ + +FL FY
Sbjct: 173 KPETSVNN---KTDINRKNSSKHNVFNDASKEIITNSNQSLNTKTSAQSTKDAEFLSTFY 229
Query: 1549 NKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWK------TSLGITED-EDLEE 1601
+ SRLH++STMG+MFK YVNELR+K +GVF G+E + K TS+G D ED
Sbjct: 230 SNSRLHYISTMGTMFKDYVNELRDKSNGVFSGLERLIKLNSTKNASTSVGCELDFEDETI 289
Query: 1602 TFSDNPS--PSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDR 1659
F+D + ++ + +IMHIDMDCFFVSVGI++ PELQ+ PVAV H KGN+ +
Sbjct: 290 CFADKITTKANDKQSIIMHIDMDCFFVSVGIKNRPELQNVPVAVTHAKGNT--FSANYNG 347
Query: 1660 QAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNL 1719
+ EF + + R+ G+ NGMF+G ALK CPNL + YDFEGYKEVSY LY+
Sbjct: 348 KEEFGSMSE--VASCSYAARKAGVKNGMFLGEALKLCPNLTTIQYDFEGYKEVSYILYDT 405
Query: 1720 IASLTLNIEAVS 1731
+AS TL+IEAVS
Sbjct: 406 VASYTLDIEAVS 417
Score = 280 bits (715), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 150/328 (45%), Positives = 200/328 (60%), Gaps = 44/328 (13%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEMYVDC+++L+ L PL+FA+ +R I ++TGC STGFG+NKLQARLAT+K
Sbjct: 413 IEAVSCDEMYVDCTKILETSGLLPLEFATIIRNEIKQKTGCPVSTGFGNNKLQARLATRK 472
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKP+ QF+ + Q ++ + DLPGVG + +KL+ + +TC DLQ ISL LQ E
Sbjct: 473 AKPDNQFYFSGQNAETYIRTFNIRDLPGVGGTTSYKLHKMNVRTCEDLQRISLGVLQKEF 532
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
G K G LYK CRG DD +L E+ RKSVSAEVNYGIRFQNN + FL +L+ EV RL
Sbjct: 533 GKKMGEQLYKMCRGIDDTKLNLEYIRKSVSAEVNYGIRFQNNGDAVDFLSELSVEVCNRL 592
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVR 2138
+ KG+CITLKLMVR+ EAP+EA+KF+GHG+C+YITK
Sbjct: 593 TLARAKGRCITLKLMVRAEEAPKEAAKFMGHGLCNYITK--------------------- 631
Query: 2139 SAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQ 2198
S +L ++ + I KEV+ I N+L + P ++RGIGIQ
Sbjct: 632 ----------------------SKNLIAAVNDINIIKKEVINIWNQLHLIPEDMRGIGIQ 669
Query: 2199 VSKLE-HQSKTLATIDTFFTNKGKPPDQ 2225
+S+LE +++K F NK K Q
Sbjct: 670 ISRLEMYKTKQAKNNLINFFNKTKKSQQ 697
Score = 53.1 bits (126), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 32/42 (76%), Gaps = 3/42 (7%)
Query: 1183 KPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
K A STK+A +FL FY+ SRLH++STMG+MFK YVN+L
Sbjct: 213 KTSAQSTKDA---EFLSTFYSNSRLHYISTMGTMFKDYVNEL 251
>gi|7437445|pir||T10466 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) II - malaria
parasite (Plasmodium falciparum)
gi|3980316|emb|CAA55900.1| DNA topoisomerase (ATP-hydrolysing) [Plasmodium falciparum]
Length = 1397
Score = 310 bits (795), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 168/373 (45%), Positives = 219/373 (58%), Gaps = 89/373 (23%)
Query: 309 DGDPVKIIYENVNPRWEVAIAPSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEV 367
D D + I+E RWE+ ++ SD FQQVSFVNSI TTKGG HV+ +V+ ++ + +
Sbjct: 317 DEDEIVKIHEK-QHRWEIVVSKSDGSQFQQVSFVNSICTTKGGSHVNYIVEQLLSSLSKK 375
Query: 368 VKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFIN 427
KNK GGM +K ++NH+W+F+N
Sbjct: 376 ANAKNK-----------------------------------GGMEIKSGHIRNHLWVFVN 400
Query: 428 CLIVNPTFDSQTKENMTLQKGSFGSTCV-------------------------------- 455
CLIVNPTFDSQTKE +T + FGS C+
Sbjct: 401 CLIVNPTFDSQTKETLTTKPVKFGSKCILSDKTINNVLKSPILSNILLWAQAKAQVELKK 460
Query: 456 ----------------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYG 499
PKLEDANDAG+K S +CTLILTEGDSAK+ ++GL +VGRDKYG
Sbjct: 461 KMKAGSSKARERIIGIPKLEDANDAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDKYG 520
Query: 500 VFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQ 559
VFPL+GKLLNVR+A+ KQ+++N EI N+ +I+GL + K +D+K LRYG LMIMTDQ
Sbjct: 521 VFPLKGKLLNVRDASFKQLMDNKEIQNIFRIMGLDITDK--NKDDIKGLRYGSLMIMTDQ 578
Query: 560 DQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEE 618
D DGSHIKGL+IN IH WP+LL+ FL EF+TPI+K K +E SF+++ E+E+WK E
Sbjct: 579 DYDGSHIKGLLINMIHKFWPSLLKHKGFLSEFVTPIVKVQKGSQEYSFFTIAEYEQWK-E 637
Query: 619 TTNWHTYKIKYYK 631
TN +KIKYYK
Sbjct: 638 NTNLLGWKIKYYK 650
Score = 285 bits (730), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 144/281 (51%), Positives = 187/281 (66%), Gaps = 31/281 (11%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYK 86
A ++E+ YQKKSQ+EHILLRPDTYIGSVE T+ +W+ N+E N M ++ ITYVPGLYK
Sbjct: 2 AKNKTIEERYQKKSQIEHILLRPDTYIGSVEMHTQLLWVWNKEKNRMVQKNITYVPGLYK 61
Query: 87 IFDEILVNACDNKQRDPK-----MNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVP 141
IFDEI+VNA D K R+ + M CIKI +N+E ISV+N+G+GIPV HK+ ++VP
Sbjct: 62 IFDEIIVNAADVKAREKEKSENPMTCIKIEINKENKRISVYNDGEGIPVDIHKEMNIYVP 121
Query: 142 TMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIF 201
MIF G LLTS NY+D ED++TGGRNG+GAKL NIF
Sbjct: 122 HMIF-------------------------GELLTSDNYDDAEDRITGGRNGFGAKLTNIF 156
Query: 202 SSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDK 261
S +F+V+ S KK FK W DNMSK + P IK+ + D+ K+TF PDL KF MT +D
Sbjct: 157 SKEFIVQCGDSSRKKEFKMTWSDNMSKFSEPHIKNYNGKDYVKVTFKPDLNKFGMTEMDD 216
Query: 262 DMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY 302
D+ L+ +R YD A T V+V+LNG++L VK+F+ YV LY
Sbjct: 217 DIESLLFKRVYDLAG-TCSVRVYLNGQRLAVKDFKSYVDLY 256
Score = 133 bits (334), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 98/154 (63%), Gaps = 6/154 (3%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP++YIP+IP +LVNG EGIGTG+ + IPN+N ++I+DNIKR I E +PM PWYK+
Sbjct: 859 KIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIIDNIKRYINKEPLIPMVPWYKD 918
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDEVHPG 778
FKG I+ G + + G I +D+D LEITEL + KWT DYK+ L+ LL + +
Sbjct: 919 FKGRIESNGKTGYETIGIINKIDNDTLEITELPIKKWTQDYKEFLEELLTDEKHQLILDY 978
Query: 779 PGRKSHPRPIAPKSYKID----DDSEEEEIEEVF 808
SH + K+D +EEE +E+VF
Sbjct: 979 IDNSSHEDICF--TIKMDPAKLQKAEEEGLEKVF 1010
Score = 44.7 bits (104), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
KDYDYLL M +SLT+E+ +LL + +K EL IL+ +W D++ + E
Sbjct: 1142 KDYDYLLSMPIFSLTLEKVEDLLTQLKEKERELEILRNITVETMWLKDIEKVEE 1195
>gi|730968|sp|P41001.1|TOP2_PLAFK RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
II
Length = 1398
Score = 310 bits (795), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 168/373 (45%), Positives = 219/373 (58%), Gaps = 89/373 (23%)
Query: 309 DGDPVKIIYENVNPRWEVAIAPSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEV 367
D D + I+E RWE+ ++ SD FQQVSFVNSI TTKGG HV+ +V+ ++ + +
Sbjct: 317 DEDEIVKIHEK-QHRWEIVVSKSDGSQFQQVSFVNSICTTKGGSHVNYIVEQLLSSLSKK 375
Query: 368 VKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFIN 427
KNK GGM +K ++NH+W+F+N
Sbjct: 376 ANAKNK-----------------------------------GGMEIKSGHIRNHLWVFVN 400
Query: 428 CLIVNPTFDSQTKENMTLQKGSFGSTCV-------------------------------- 455
CLIVNPTFDSQTKE +T + FGS C+
Sbjct: 401 CLIVNPTFDSQTKETLTTKPVKFGSKCILSDKTINNVLKSPILSNILLWAQAKAQVELKK 460
Query: 456 ----------------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYG 499
PKLEDANDAG+K S +CTLILTEGDSAK+ ++GL +VGRDKYG
Sbjct: 461 KMKAGSSKARERIIGIPKLEDANDAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDKYG 520
Query: 500 VFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQ 559
VFPL+GKLLNVR+A+ KQ+++N EI N+ +I+GL + K +D+K LRYG LMIMTDQ
Sbjct: 521 VFPLKGKLLNVRDASFKQLMDNKEIQNIFRIMGLDITDK--NKDDIKGLRYGSLMIMTDQ 578
Query: 560 DQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEE 618
D DGSHIKGL+IN IH WP+LL+ FL EF+TPI+K K +E SF+++ E+E+WK E
Sbjct: 579 DYDGSHIKGLLINMIHKFWPSLLKHKGFLSEFVTPIVKVQKGSQEYSFFTIAEYEQWK-E 637
Query: 619 TTNWHTYKIKYYK 631
TN +KIKYYK
Sbjct: 638 NTNLLGWKIKYYK 650
Score = 285 bits (730), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 144/281 (51%), Positives = 187/281 (66%), Gaps = 31/281 (11%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYK 86
A ++E+ YQKKSQ+EHILLRPDTYIGSVE T+ +W+ N+E N M ++ ITYVPGLYK
Sbjct: 2 AKNKTIEERYQKKSQIEHILLRPDTYIGSVEMHTQLLWVWNKEKNRMVQKNITYVPGLYK 61
Query: 87 IFDEILVNACDNKQRDPK-----MNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVP 141
IFDEI+VNA D K R+ + M CIKI +N+E ISV+N+G+GIPV HK+ ++VP
Sbjct: 62 IFDEIIVNAADVKAREKEKSENPMTCIKIEINKENKRISVYNDGEGIPVDIHKEMNIYVP 121
Query: 142 TMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIF 201
MIF G LLTS NY+D ED++TGGRNG+GAKL NIF
Sbjct: 122 HMIF-------------------------GELLTSDNYDDAEDRITGGRNGFGAKLTNIF 156
Query: 202 SSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDK 261
S +F+V+ S KK FK W DNMSK + P IK+ + D+ K+TF PDL KF MT +D
Sbjct: 157 SKEFIVQCGDSSRKKEFKMTWSDNMSKFSEPHIKNYNGKDYVKVTFKPDLNKFGMTEMDD 216
Query: 262 DMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY 302
D+ L+ +R YD A T V+V+LNG++L VK+F+ YV LY
Sbjct: 217 DIESLLFKRVYDLAG-TCSVRVYLNGQRLAVKDFKSYVDLY 256
Score = 133 bits (334), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 98/154 (63%), Gaps = 6/154 (3%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP++YIP+IP +LVNG EGIGTG+ + IPN+N ++I+DNIKR I E +PM PWYK+
Sbjct: 860 KIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIIDNIKRYINKEPLIPMVPWYKD 919
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDEVHPG 778
FKG I+ G + + G I +D+D LEITEL + KWT DYK+ L+ LL + +
Sbjct: 920 FKGRIESNGKTGYETIGIINKIDNDTLEITELPIKKWTQDYKEFLEELLTDEKHQLILDY 979
Query: 779 PGRKSHPRPIAPKSYKID----DDSEEEEIEEVF 808
SH + K+D +EEE +E+VF
Sbjct: 980 IDNSSHEDICF--TIKMDPAKLQKAEEEGLEKVF 1011
Score = 44.7 bits (104), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
KDYDYLL M +SLT+E+ +LL + +K EL IL+ +W D++ + E
Sbjct: 1143 KDYDYLLSMPIFSLTLEKVEDLLTQLKEKERELEILRNITVETMWLKDIEKVEE 1196
>gi|332025648|gb|EGI65810.1| DNA repair protein REV1 [Acromyrmex echinatior]
Length = 1124
Score = 309 bits (791), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 189/429 (44%), Positives = 257/429 (59%), Gaps = 61/429 (14%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSR--GGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELK 1376
GGYM AKK KLEEQF A+ + + +F+G+AIFVNGYT P+++EL+
Sbjct: 19 GGYMAAKKAKLEEQFRDTASKEFKESSKLFEGIAIFVNGYTN-----------PTSDELR 67
Query: 1377 ALMMLHGGIYHHYESSR-TTHIIASNLPHTKI---KKLKPGDKIIKPEWIVDSISAGKLL 1432
LMM+HGGIYHHY + TTHIIASNLP++KI +K + I KP+WI+DSI+AGK+L
Sbjct: 68 RLMMMHGGIYHHYMRPKITTHIIASNLPYSKIVLYRKSQNPIPICKPQWIIDSIAAGKIL 127
Query: 1433 DHKKYLLYTG-TDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKS 1491
+ + YLLY+ T+ +P Q +Y N + + S++ + N E+ ++
Sbjct: 128 NFQNYLLYSNSTNLQP-----QLAYKLNNK------------DNASSIIHNKQNIEKPEA 170
Query: 1492 EAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKS 1551
V E ++ N SK V ++ K A ST++A +FL FY+ S
Sbjct: 171 NTVCKE---TDINNKNISKHNVCNDA-------LNNTKISAQSTRDA---EFLSTFYSNS 217
Query: 1552 RLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT---SLGIT---EDEDLEETFSD 1605
RLH++STMG+MFK YVNELR+K DGVF G+E ++ T S +T E ED F+D
Sbjct: 218 RLHYISTMGTMFKDYVNELRDKSDGVFSGLERLKLKSTKNASTSVTCESESEDETICFTD 277
Query: 1606 ---NPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAE 1662
+ + +PVIMHIDMDCFFVSVGIR+ PELQ P+AV H K N+ + + E
Sbjct: 278 KVTGKANHKQKPVIMHIDMDCFFVSVGIRNKPELQSVPIAVTHAKSNT--FSANYNGKEE 335
Query: 1663 FDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIAS 1722
F + + R+ G+ NGMF+G ALK CPNLK + YDFEGYKEVSY LY+ +AS
Sbjct: 336 FGSMSE--VASCSYAARKAGVKNGMFLGEALKLCPNLKTIQYDFEGYKEVSYILYDTVAS 393
Query: 1723 LTLNIEAVS 1731
TL+IEAVS
Sbjct: 394 YTLDIEAVS 402
Score = 274 bits (701), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 151/360 (41%), Positives = 203/360 (56%), Gaps = 45/360 (12%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEMYVDC+++L+ L+PL+FA+ +R I ++T C STGFG+NKLQARLAT+K
Sbjct: 398 IEAVSCDEMYVDCTKILEASGLSPLEFATIIRNEIKQKTDCPVSTGFGNNKLQARLATRK 457
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKP+ QF+L + ++ + DLPGVG + +KL+ + C DLQ ISL LQ E
Sbjct: 458 AKPDNQFYLNDKNTETYIQTFNIRDLPGVGGTTTYKLHKMNVNICEDLQKISLGVLQKEF 517
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
G K G LYK CRG DD +L E+ RKSVSAEVNYGIRFQNN + FL +L+ EV RL
Sbjct: 518 GKKLGEQLYKMCRGLDDTKLNLEYVRKSVSAEVNYGIRFQNNGDAIDFLSELSVEVCNRL 577
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVR 2138
+ KG+CITLKLMVR+ EAP+E +KF+GHG+C+YITK
Sbjct: 578 TAARAKGRCITLKLMVRAEEAPKETAKFMGHGLCNYITK--------------------- 616
Query: 2139 SAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQ 2198
S +L + S I KEV+ I N+L + P ++RGIGIQ
Sbjct: 617 ----------------------SKNLIAAVDDISIIKKEVISIWNQLHLIPEDMRGIGIQ 654
Query: 2199 VSKLE--HQSKTLATIDTFFTNKGKPPDQLNNPRPGPSNSTITPGPSNSTLPPGPSNSTL 2256
+S+LE + + + FF K P + + ++ S PS TL
Sbjct: 655 ISRLEICKTKQAKSNLINFFNKTKKIPQPCDKMLEDDNKDCVSVEKSKPDCSKVPSTETL 714
Score = 52.8 bits (125), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 56/129 (43%), Gaps = 51/129 (39%)
Query: 1179 ISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQLISLQQDKQLPAIQV 1238
++ K A ST++A +FL FY+ SRLH++STMG+MFK YV
Sbjct: 194 LNNTKISAQSTRDA---EFLSTFYSNSRLHYISTMGTMFKDYV----------------- 233
Query: 1239 ISIRSPRARPPRRSSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT---SLGIT---ED 1292
NELR+K DGVF G+E ++ T S +T E
Sbjct: 234 -------------------------NELRDKSDGVFSGLERLKLKSTKNASTSVTCESES 268
Query: 1293 EDLEETFSD 1301
ED F+D
Sbjct: 269 EDETICFTD 277
>gi|380022503|ref|XP_003695083.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein REV1-like [Apis
florea]
Length = 1136
Score = 309 bits (791), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 186/435 (42%), Positives = 260/435 (59%), Gaps = 63/435 (14%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSR-GGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
GGYM AK+ KLEEQF EAN + + IF+G+AIFVNGYT P+A+EL+
Sbjct: 19 GGYMAAKQAKLEEQFINEANKEIKTSNIFKGIAIFVNGYTN-----------PTADELRH 67
Query: 1378 LMMLHGGIYHHYESSR-TTHIIASNLPHTKI---KKLKPGDKIIKPEWIVDSISAGKLLD 1433
LM+ HGG++HHY + TTHIIASNLP++KI KK + I KPEWIVDSI AG++L+
Sbjct: 68 LMIAHGGLFHHYMRPKATTHIIASNLPYSKIILYKKSQNPIPICKPEWIVDSIKAGRILN 127
Query: 1434 HKKYLLYT-GTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSE 1492
+ YLLY+ T+A+P K + ++ T C + + V+ ++ ST+ + D TE K
Sbjct: 128 FQNYLLYSHCTNAQPQLKYIIQNIRNETNVICETHNDVQKNNEVSTLKNDNDITEAIKHT 187
Query: 1493 AVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSR 1552
++ +S PI SK A+STKN +F+ EFYN SR
Sbjct: 188 SI----KESIPILPINSKD--------------------ANSTKNP---EFIKEFYNHSR 220
Query: 1553 LHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT--------SLGITEDEDLEETFS 1604
LHH+STMG+ FK+YVNELR+K++G F G ++ SL ++ + +L +
Sbjct: 221 LHHISTMGTTFKEYVNELRDKNNGEFPGFIKLKLKDKKLNKLLFDSLELSLNNELIDLQE 280
Query: 1605 DNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFD 1664
+N + +IMHIDMDCFFVSVG+R PEL+ PVAV H KGN + V +++Q D
Sbjct: 281 ENKMEINQDCIIMHIDMDCFFVSVGLRDKPELKGLPVAVTHAKGNKNSV--NINKQT-LD 337
Query: 1665 IYRQRTMNRMGLN--------TREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCL 1716
+ R + L+ R+ G+ NGMF+G ALK CP+L+ +PY+FEGY +VSY L
Sbjct: 338 DNKNRDEEQCSLSEIASCSYEARKAGVKNGMFLGEALKICPDLRTIPYNFEGYTKVSYIL 397
Query: 1717 YNLIASLTLNIEAVS 1731
Y+ +AS TL+IEAVS
Sbjct: 398 YDTVASYTLDIEAVS 412
Score = 273 bits (698), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 143/324 (44%), Positives = 200/324 (61%), Gaps = 47/324 (14%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEMY DC+++L+E LTP++FA+ +R+ I ++TGC STGFG NKL ARLAT+K
Sbjct: 408 IEAVSCDEMYADCTKILEESGLTPMEFATIIRQEIKEKTGCPVSTGFGRNKLLARLATRK 467
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKPNGQF++ + I++ + + + DLPGVG + KLN++ +TC +LQ I L LQ E
Sbjct: 468 AKPNGQFYIQQEDINNCISSFNVQDLPGVGWTTTHKLNNINIRTCAELQKIPLTTLQKEF 527
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
G K LY CRG D+ +L EH RKSVSAEVNYGIRF++N + FLK+L+ EV RL
Sbjct: 528 GKKMSEILYNMCRGIDNSKLNLEHIRKSVSAEVNYGIRFESNDDAIDFLKKLSHEVCNRL 587
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVR 2138
+V KG+CITLK+++R+ EAP+E KF+GHG+CDY+TKS +
Sbjct: 588 NKVNAKGRCITLKVLIRAKEAPKETEKFMGHGLCDYVTKSKNFI---------------- 631
Query: 2139 SAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQ 2198
AP I+ I KEV+ + N+++ P + RGIGIQ
Sbjct: 632 ---AP------------------------INDVDIITKEVIILWNQMQKIPEDARGIGIQ 664
Query: 2199 VSKLE---HQSKTLATIDTFFTNK 2219
+S+LE ++S+ T+ F NK
Sbjct: 665 ISRLEILKNKSRN-TTLTNFIRNK 687
Score = 55.8 bits (133), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 32/39 (82%), Gaps = 3/39 (7%)
Query: 1186 ASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
A+STKN +F+ EFYN SRLHH+STMG+ FK+YVN+L
Sbjct: 203 ANSTKNP---EFIKEFYNHSRLHHISTMGTTFKEYVNEL 238
>gi|307213209|gb|EFN88704.1| DNA repair protein REV1 [Harpegnathos saltator]
Length = 1155
Score = 306 bits (785), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 189/427 (44%), Positives = 253/427 (59%), Gaps = 47/427 (11%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSR--GGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELK 1376
GGYM AKK KLEEQF +A + + +F+G+AIFVNGYT P+++EL+
Sbjct: 19 GGYMAAKKAKLEEQFRDKATKEFKESSKLFEGIAIFVNGYTD-----------PTSDELR 67
Query: 1377 ALMMLHGGIYHHYESSR-TTHIIASNLPHTKIKKLKPGDK---IIKPEWIVDSISAGKLL 1432
LMM+HGGIYHHY R TTHIIASNLPH+KI + I KP+WI +SI+AGK+L
Sbjct: 68 HLMMMHGGIYHHYMRPRITTHIIASNLPHSKIVLYRRSQNPIPICKPQWITESIAAGKIL 127
Query: 1433 DHKKYLLYTG-TDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKS 1491
+ + YLLY+ T+A+P +L K +N K +E S D +D E +
Sbjct: 128 NFQNYLLYSNSTNAQP--QLAYKLNIKN------GKFNIE-----SVTQDKMD--AEVST 172
Query: 1492 EAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKS 1551
VN++ S + E K+ S+ + A ST++ +FL FY+ S
Sbjct: 173 NTVNNKNSTIDINVLDEGTNNDTRIHDKINIPQSSSARINAQSTRDT---EFLSAFYSNS 229
Query: 1552 RLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWK-----TSLGITEDEDLEET--FS 1604
RLH+++TMG+ FK YVNELR+K DG F +E + K + +SL E + ++T F
Sbjct: 230 RLHYIATMGTTFKDYVNELRDKSDGTFPELERLTKSRKVRGTSSLAGRESDSEDDTIGFD 289
Query: 1605 DNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFD 1664
++ + ++ E VIMHIDMDCFFVSVGIR PELQ PVAVAH KGN D + EF
Sbjct: 290 NSKACNKREFVIMHIDMDCFFVSVGIRKRPELQGLPVAVAHAKGNVHSTSH--DGKEEFG 347
Query: 1665 IYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLT 1724
+ + R+ G+ NGMF+G ALK CPNLK + YDFEGYKEVSY LY+ +AS T
Sbjct: 348 SMSE--VASCSYAARKAGVKNGMFLGEALKMCPNLKTIQYDFEGYKEVSYALYDTVASYT 405
Query: 1725 LNIEAVS 1731
L+IEAVS
Sbjct: 406 LSIEAVS 412
Score = 276 bits (707), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 148/342 (43%), Positives = 207/342 (60%), Gaps = 48/342 (14%)
Query: 1875 EAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIA 1934
E Y+E V A+ +S + + AVSCDEMY DC+++L+ L+PL+FA+ +RE I
Sbjct: 388 EGYKE----VSYALYDTVASYTLSIEAVSCDEMYADCTKVLETSGLSPLEFATVIREKIK 443
Query: 1935 KETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFK 1994
++TGC STGFGSNKL ARLAT+KAKP+ QF+L+ + ++ + + DLPGVG + K
Sbjct: 444 RKTGCPVSTGFGSNKLLARLATRKAKPDNQFYLSGRNAEPYIRTLNVRDLPGVGGTTTHK 503
Query: 1995 LNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYG 2054
L+ + +TC LQ +SL LQ E G K G L+K CRG DD +L EH RKSVSAEVNYG
Sbjct: 504 LHEMNVRTCEQLQMVSLGLLQKEFGRKTGEQLHKMCRGLDDTKLNLEHVRKSVSAEVNYG 563
Query: 2055 IRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDY 2114
IRF++N++ FL +L+ EV RL ++KG+C+TLKLM+R+ EAP+E +KF+GHG+C+Y
Sbjct: 564 IRFRDNEDAVNFLSKLSTEVCSRLTAARVKGRCVTLKLMIRAKEAPKETAKFMGHGLCNY 623
Query: 2115 ITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQI 2174
ITKS R LI + + I
Sbjct: 624 ITKS-------RNLIAS------------------------------------VDDVGII 640
Query: 2175 LKEVLFIVNKLKVDPVELRGIGIQVSKLEHQSKTLATIDTFF 2216
KEV+ I N+L + P ++RGIGIQ+S+LE K ++ FF
Sbjct: 641 RKEVVSIWNQLHLTPEDMRGIGIQISRLE-ICKNKGSLKNFF 681
Score = 49.3 bits (116), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 13/88 (14%)
Query: 1173 LREGVNISAPKPQASSTK----NASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQLISLQ 1228
+ + +NI PQ+SS + + + +FL FY+ SRLH+++TMG+ FK YVN+L +
Sbjct: 197 IHDKINI----PQSSSARINAQSTRDTEFLSAFYSNSRLHYIATMGTTFKDYVNELRD-K 251
Query: 1229 QDKQLPAIQVISIRSPRARPPRRSSTMG 1256
D P ++ R ++R R +S++
Sbjct: 252 SDGTFPELE----RLTKSRKVRGTSSLA 275
>gi|322510996|gb|ADX06309.1| DNA gyrase B domain-containing protein [Organic Lake phycodnavirus
2]
Length = 483
Score = 306 bits (785), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 203/542 (37%), Positives = 275/542 (50%), Gaps = 127/542 (23%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQKK+ EHIL PDTYIGS+E + M++ E H+ + I Y PGL+K+FDE +VN
Sbjct: 8 YQKKTDKEHILDNPDTYIGSIENVNGPMYVY--EDGHIVNKNIDYNPGLFKLFDEGIVNC 65
Query: 96 CDN-------KQRDPKMNCIK-ITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGH 147
D+ K+ D + I + + N I++ NNG GI + +H +++P +IFGH
Sbjct: 66 RDHVVRMLQKKEHDDTTQLVNMIDIQIQDNMITLMNNGNGIDIEKHPTYDIWIPELIFGH 125
Query: 148 LLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVV 207
L TS+NYN +E+K+TGG+NG+G KL I+S+ ++
Sbjct: 126 LRTSTNYN-------------------------KDEEKITGGKNGFGFKLVLIWSTYGMI 160
Query: 208 ETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLI 267
ET K + Q ++ N+ V P I SK +T + F PD + + L KDM+ L
Sbjct: 161 ETIDYTRKLKYTQEFETNLDVVHKPSITKCSKKPYTLVKFKPDYKRLGLNELSKDMIALF 220
Query: 268 TRRAYD-AAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEV 326
RR YD A +TKDVKV LNGE L VKNF YV LY D D + +E RW
Sbjct: 221 QRRVYDIAGITTKDVKVKLNGEALDVKNFNHYVDLYN-----DCDKISEQHE----RWSY 271
Query: 327 AIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNK 386
+I S+ F+QVSFVN I T+KGG+HVD +V IVK++I ++KK K
Sbjct: 272 SICLSEE-FKQVSFVNGIFTSKGGKHVDYIVQQIVKKMIVYIEKKKK------------- 317
Query: 387 FNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ 446
+ +KP +K + IF+NC IVNP+FDSQTK+ +
Sbjct: 318 ------------------------VDVKPSIIKEQLHIFLNCTIVNPSFDSQTKDYLNTP 353
Query: 447 KGSFGSTCV--------------------------------------------PKLEDAN 462
FGS+CV PKL DAN
Sbjct: 354 PSKFGSSCVVSDKFIEKLAKQGIMENSCELSHIKEKNNSKKTDGNKNKTIRGIPKLVDAN 413
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
AGTK+S CTLIL EGDSAK+ +SGL R+ GV+P++GKLLNVR T K+I EN
Sbjct: 414 YAGTKDSKLCTLILCEGDSAKAGILSGLTPSDRNIIGVYPMKGKLLNVRGETTKKINENK 473
Query: 523 EI 524
EI
Sbjct: 474 EI 475
>gi|340056049|emb|CCC50378.1| putative DNA topoisomerase II, fragment [Trypanosoma vivax Y486]
Length = 1195
Score = 305 bits (782), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 216/628 (34%), Positives = 322/628 (51%), Gaps = 76/628 (12%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y+K + +EH+L+RP+ YIGS++ I+ M++ + M + GL KI DEIL+NA
Sbjct: 7 YKKLTPIEHVLVRPEMYIGSIDTISTPMFVFDESKGRMVWESMRLNHGLLKIVDEILLNA 66
Query: 96 CDN-KQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
DN + +M I++ + +T I++ N+G GIP+V+ ++ K+++P M+F
Sbjct: 67 SDNISNKGGRMTYIRVRIT-DTGEITIENDGAGIPIVKSREHKLYIPEMVF--------- 116
Query: 155 NDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEY 214
GHLLTSSNY+D+ GR+GYGAKL NI S F V C
Sbjct: 117 ----------------GHLLTSSNYDDDAQSTVAGRHGYGAKLTNILSLNFSV--CCRTN 158
Query: 215 KKSFKQVWKDNMSKVTSPEIKS--GSKDDFTKITFTPDLTKF--KMTSLDKDMVDLITRR 270
+ F W+DNM K T+P + + + + T++ F PD +F K + DM ++ +R
Sbjct: 159 GREFHMSWQDNMRKATAPRVSNVDPKERNITRVKFLPDYERFGLKEKKISTDMRRVLHKR 218
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGD-PVKIIYENVNPRWEVAIA 329
D AA +++ LNG K+F+DY KLY+ D + P +YE+ + VA
Sbjct: 219 VMDLAAMYPSIQITLNGTSFGFKSFKDYAKLYSIASDTGEEPPAPYVYESRSG--CVAFV 276
Query: 330 PS-DRGFQQV-SFVNSIATTKGGRHVDA---VVDAIVKQIIEVVKKKNKDLGC------- 377
PS G +++ S VN + T GG H A ++ ++ + +KK+NK +
Sbjct: 277 PSLTPGVRRIFSVVNGVVTYNGGTHCTAAQEILSGSLENVERNLKKENKVVDTNRVLRHF 336
Query: 378 TIIMLFGN---KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNP- 433
TI++ KF++ NK ++ T M P Q + + L N
Sbjct: 337 TILVFLVQVQPKFDS--QNKARLVST--------PNMPRVPRQDVQKYLLRLPFLEANVN 386
Query: 434 TFDSQTKENMTLQKGSFGS-------TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLA 486
T Q + + + G+ T + KL DA TLI+TEGDSAKSLA
Sbjct: 387 TLSGQLAQELNREIGAGRRMSSKALLTSITKLVDATTTRRDPRYIRTLIVTEGDSAKSLA 446
Query: 487 VSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMK 546
+ L + GVFPLRGKLLNVR K++ E+ +L LGL+ K Y +D +
Sbjct: 447 QNSLSSEQKRYTGVFPLRGKLLNVRNKNLKRLRNCKELQDLFCALGLELDKDY---KDAE 503
Query: 547 TLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL-RLP-FLEEFITPIIKA-TKAREE 603
LRY R+++MTDQD DGSHIKGL+IN WP+LL R P F+ F TPI+K + +
Sbjct: 504 ELRYQRVLVMTDQDADGSHIKGLVINAFESLWPSLLVRNPGFISIFSTPIVKVRLRDKSV 563
Query: 604 LSFYSLPEFEEWKEETTNWHTYKIKYYK 631
LSF+SL EF +W+ N +Y KYYK
Sbjct: 564 LSFFSLKEFHKWQRSNPN-TSYTCKYYK 590
Score = 54.7 bits (130), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 22/118 (18%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
++EP Y+PIIPM+L NG G+ G K +KR++ PW
Sbjct: 801 QVEPNHYVPIIPMLLCNGVRGMINGEAAK----------SVVKRLV---------PWAVG 841
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDEVH 776
++GE+ D F+V G ++ +TEL WT + D + A++D VH
Sbjct: 842 YQGEVRRGPDGEFIVVGTYHYYKGGRVHVTEL---PWTCSVEAFRDHVSALAKRDIVH 896
>gi|68069037|ref|XP_676429.1| DNA topoisomerase II [Plasmodium berghei strain ANKA]
gi|56496123|emb|CAH96271.1| DNA topoisomerase II, putative [Plasmodium berghei]
Length = 1092
Score = 305 bits (782), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 165/359 (45%), Positives = 213/359 (59%), Gaps = 89/359 (24%)
Query: 323 RWEVAIAPSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RWE+ I+ +D FQQVSFVNSI TTKGG HV +VD ++ + + KNK
Sbjct: 336 RWEIVISKTDGSQFQQVSFVNSICTTKGGTHVSYIVDQLLNSLSKKANAKNK-------- 387
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
GGM +K ++NH+W+F+NCLIVNPTFDSQTKE
Sbjct: 388 ---------------------------GGMEIKSGHIRNHLWVFVNCLIVNPTFDSQTKE 420
Query: 442 NMTLQKGSFGSTCV---------------------------------------------- 455
+T ++ FGS C+
Sbjct: 421 TLTTKQSKFGSKCILTDKTINNVLKSSILSNILLWAQAKAQVELRKKMKAGSSKARERII 480
Query: 456 --PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREA 513
PKLEDANDAG+K S +CTLILTEGDSAK+ ++GL +VGRD+YGVFPL+GKLLNVR+A
Sbjct: 481 GIPKLEDANDAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDRYGVFPLKGKLLNVRDA 540
Query: 514 THKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINF 573
+ KQ+++N EI N+ KI+GL + K +D+K LRYG LMI TDQD DGSHIKGL+IN
Sbjct: 541 SFKQLMDNKEIQNIFKIMGLDITDK--NKQDIKGLRYGSLMI-TDQDYDGSHIKGLLINM 597
Query: 574 IHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
IH WP+LL+ FL EF+TPI+K K +ELSF+++ E+E+WK E TN +KIKYYK
Sbjct: 598 IHKFWPSLLKHKGFLCEFVTPIVKVQKGNQELSFFTIAEYEQWK-ENTNLVGWKIKYYK 655
Score = 280 bits (715), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 142/277 (51%), Positives = 184/277 (66%), Gaps = 31/277 (11%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E+ YQKKSQ+EHILLRPDTYIGSVE T+ +W+ N+E N M ++ ITYVPGLYKIFDE
Sbjct: 6 TIEERYQKKSQIEHILLRPDTYIGSVEMHTQLLWIWNKEKNRMVQKNITYVPGLYKIFDE 65
Query: 91 ILVNACDNKQRDPK-----MNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIF 145
I+VNA D K R+ + M CIKI +N+E ISV+N+G+GIPV HK+ ++VP MIF
Sbjct: 66 IIVNAADVKAREKEKSENPMTCIKIEINKEQKRISVYNDGEGIPVDIHKEMNIYVPHMIF 125
Query: 146 GHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF 205
G LLTS NY+D ED++TGGRNG+GAKL NIFS +F
Sbjct: 126 -------------------------GELLTSDNYDDAEDRITGGRNGFGAKLTNIFSKEF 160
Query: 206 VVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVD 265
V+ S K+ FK W NMSK + P IK+ + D+ K+TF PDL KF M LD D+
Sbjct: 161 TVQCGDSSRKREFKMTWSQNMSKFSEPHIKNYNGKDYVKVTFKPDLDKFGMAELDDDIEC 220
Query: 266 LITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY 302
L+ +R YD A T +V+V+LNG +LPVK+F+ YV LY
Sbjct: 221 LLHKRVYDLAG-TCNVRVYLNGTRLPVKDFKSYVDLY 256
Score = 127 bits (319), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 98/154 (63%), Gaps = 6/154 (3%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP++YIP+IP +LVNG EGIGTG+ + IPN+N ++I++NIK+ I E +PM PWYK+
Sbjct: 864 KIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIINNIKKYIDKEPLVPMVPWYKD 923
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDEVHPG 778
FKG I+ G S + G I +DD+ LEITEL + +WT DYK+ L+ LL + +
Sbjct: 924 FKGRIEPNGKSGYETIGIINKIDDETLEITELPIKRWTQDYKEFLEELLTDEKNQLIIDY 983
Query: 779 PGRKSHPRPIAPKSYKID----DDSEEEEIEEVF 808
SH + K+D +EEE +E+VF
Sbjct: 984 IDNSSHEDVCF--TIKMDPTKLKRAEEEGLEKVF 1015
>gi|297794799|ref|XP_002865284.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297311119|gb|EFH41543.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 658
Score = 303 bits (777), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 174/417 (41%), Positives = 241/417 (57%), Gaps = 82/417 (19%)
Query: 42 LEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQR 101
+EHILL PD+YIGS+E T+T+W+ +E M R +TYVPGLYKIFDEILVNA DNK+R
Sbjct: 30 IEHILLCPDSYIGSIEKHTQTLWVYEKE--EMVCRSVTYVPGLYKIFDEILVNAADNKRR 87
Query: 102 DPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKV 161
DP M+ +K+ ++ E N ISV N+G G+P+ +E +FVP + FGH L
Sbjct: 88 DPSMDSVKVVIDVEKNQISVCNSGDGVPL----EEGVFVPGIFFGHWL------------ 131
Query: 162 TGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK-KSFKQ 220
NY++ K TG RNG+GA L NIFS++F++E + + K +KQ
Sbjct: 132 --------------RRNYDNNVKKTTGRRNGFGATLTNIFSTEFIIEIADGKRSLKKYKQ 177
Query: 221 VWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAST- 278
V+++NM ++ I +K +++TK+TF PDL KF MT L+ D+V L+++R +D A
Sbjct: 178 VFENNMGNMSKLFITKCNKGENWTKVTFKPDLKKFNMTELENDVVALMSKRVFDIAGCLG 237
Query: 279 KDVKVFLNGEKLPVKNFQDYVKLYTDRQDED-GDPVKIIYENVNPRWEVAIAPSDRGFQQ 337
+ VKV LNG+++P+K+F DYV LY + +P+ + E VN RWEV
Sbjct: 238 QTVKVDLNGKRVPIKSFSDYVDLYLSAASKSRTEPLPRMNEKVNDRWEVC---------- 287
Query: 338 VSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQM 397
VSFVNSIAT KGG HVD V + + I+ +V KK K+ NVK +
Sbjct: 288 VSFVNSIATIKGGTHVDYVTSQVTEYIVGIVNKK-------------KKYPNVKTH---- 330
Query: 398 AKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC 454
VKNH+W+F+N LI NP FDSQTKE +TL + SFGS C
Sbjct: 331 -------------------NVKNHLWVFVNALIDNPAFDSQTKETLTLPERSFGSKC 368
>gi|12641855|dbj|BAB21546.1| type II DNA topoisomerase [Pyropia dentata]
Length = 359
Score = 303 bits (777), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 176/397 (44%), Positives = 224/397 (56%), Gaps = 85/397 (21%)
Query: 174 LTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPE 233
LTSSNY+D E KV GGRNGYGAKL NIFS++FVVET+ + +++ Q ++ NM +P
Sbjct: 1 LTSSNYDDGERKVVGGRNGYGAKLANIFSTRFVVETADAGSGQTYAQTFRRNMMDRGAPA 60
Query: 234 IKSGSK--DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLP 291
I+ +K D +T+ITF PDL KF M LD D V ++ R D A + V+LNG KL
Sbjct: 61 IRPSAKPRDAWTRITFEPDLAKFGMGRLDADAVAVLQMRVVDMAGVVPGISVYLNGVKLK 120
Query: 292 VKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGR 351
V +F+ YV L+ + D +I RWEV ++ SD Q SFVNSIATTKGG
Sbjct: 121 VNSFKQYVDLHL---ADVPDAPRIHDAPPGSRWEVVVSVSDGQLTQTSFVNSIATTKGGT 177
Query: 352 HVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGM 411
HV V D +V +I E + KK+K L
Sbjct: 178 HVGHVADQLVARIQEHIAKKHKAL------------------------------------ 201
Query: 412 ALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS--TC--------------- 454
+KPFQ+K+ + I++ CL+ NP FDSQTKE +T + SFGS TC
Sbjct: 202 KVKPFQIKSQLSIYVKCLVENPAFDSQTKEMLTSRPSSFGSKWTCPDRMAKELLKSGVVE 261
Query: 455 ---------------------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAV 487
+PKL+DAN AGT++S CTLILTEGDSAK+LA+
Sbjct: 262 NVLSLAASRQNKELAKTDGGKRARVSGIPKLDDANLAGTRDSARCTLILTEGDSAKALAI 321
Query: 488 SGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
SGL V+GRD YGVFPLRGKLLNVREATHKQI++NAEI
Sbjct: 322 SGLSVLGRDLYGVFPLRGKLLNVREATHKQIMDNAEI 358
>gi|71744648|ref|XP_803868.1| DNA topoisomerase II [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70831119|gb|EAN76624.1| DNA topoisomerase II [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 1221
Score = 303 bits (776), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 213/624 (34%), Positives = 322/624 (51%), Gaps = 68/624 (10%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y+K + +EH+L RP+ YIGS++ M++ + + HM + GL KI DEIL+NA
Sbjct: 7 YKKLTPIEHVLTRPEMYIGSLDTTATPMFIYDEQKGHMVWETVKLNHGLLKIVDEILLNA 66
Query: 96 CDN-KQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
DN R +M I++T+ +T I++ N+G GIP+V ++ K+++P M+F
Sbjct: 67 SDNISNRSARMTYIRVTIT-DTGEITIENDGAGIPIVRSREHKLYIPEMVF--------- 116
Query: 155 NDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEY 214
GHLLTSSNY+D+ GR+GYGAKL NI S F V C
Sbjct: 117 ----------------GHLLTSSNYDDDNQNAVAGRHGYGAKLTNILSLSFSV--CCRTN 158
Query: 215 KKSFKQVWKDNMSKVTSPEIKS-GSKD-DFTKITFTPDLTKFKM--TSLDKDMVDLITRR 270
+ F W+D+M K T+P + + G+K+ + T++ F PD +F M + DM ++ +R
Sbjct: 159 GREFHMSWQDHMRKATAPRVSNVGTKEKNVTRVKFLPDYERFGMKEKKISNDMKRVLYKR 218
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDE-DGDPVKIIYENVNP--RWEVA 327
D +A ++++ LNG K+F+DY LY+ + + P +YE+ + + +
Sbjct: 219 IMDLSAMFPNIQITLNGSSFGFKSFKDYATLYSAMTPKGEKPPPPYVYESKSGCVAFIPS 278
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEV---VKKKNKDLGC------- 377
+ P R + VN + T GG H +A D + + V +KK+NK +
Sbjct: 279 VVPGVR--RMFGVVNGVVTYNGGTHCNAAQDILTGCLDGVERELKKENKVMDTNRVLRHF 336
Query: 378 TIIMLFGN---KFNNVKNNKLQMAKTLIDIGVR--LGGMALKPFQVKNHIWIFINCLIVN 432
TI++ KF++ +L T+ + + + + PF ++ H+ I
Sbjct: 337 TILVFLVQVQPKFDSQNKARLVSTPTMPRVPRQDVMKYLLRMPF-LEAHV-----STITG 390
Query: 433 PTFDSQTKENMTLQKGSFGS--TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGL 490
KE T ++ S + T + KL DA TLI+TEGDSAK+LA + L
Sbjct: 391 QLAQELNKEIGTGRRMSSKTLLTSITKLVDATSTRRDPKHTRTLIVTEGDSAKALAQNSL 450
Query: 491 GVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRY 550
+ GVFPLRGKLLNVR K++ E+ L LGL+ K YT D LRY
Sbjct: 451 SSDQKRYTGVFPLRGKLLNVRNKNLKRLRNCKELQELFCALGLELDKDYT---DADELRY 507
Query: 551 GRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL-RLP-FLEEFITPIIKA-TKAREELSFY 607
R++IMTDQD DGSHIKGL+IN WP+LL R P F+ F TPI+KA + + +SF+
Sbjct: 508 QRILIMTDQDADGSHIKGLVINAFESLWPSLLVRNPGFISIFSTPIVKARLRDKSVVSFF 567
Query: 608 SLPEFEEWKEETTNWHTYKIKYYK 631
S+ EF +W+ N Y KYYK
Sbjct: 568 SMKEFHKWQRSNAN-TPYTCKYYK 590
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 7/122 (5%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLP----MKP 714
++EP Y+PI+P++L NG+ GIG G+ + IP +P ++ ++ MI GE + P
Sbjct: 801 QVEPNHYVPILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRAMISGEAAKSVVRRLVP 860
Query: 715 WYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
W F+GEI + F+ G ++ +TEL WT + + + + A KD
Sbjct: 861 WAVGFQGEIRRGPEGEFIAVGTYTYCKGGRVHVTEL---PWTCSVEAFREHISYLATKDI 917
Query: 775 VH 776
V+
Sbjct: 918 VN 919
>gi|135998|sp|P12531.1|TOP2_TRYBB RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
II
gi|162305|gb|AAA30256.1| DNA topoisomerase II [Trypanosoma brucei]
Length = 1221
Score = 303 bits (776), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 213/624 (34%), Positives = 322/624 (51%), Gaps = 68/624 (10%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y+K + +EH+L RP+ YIGS++ M++ + + HM + GL KI DEIL+NA
Sbjct: 7 YKKLTPIEHVLTRPEMYIGSLDTTATPMFIYDEQKGHMVWETVKLNHGLLKIVDEILLNA 66
Query: 96 CDN-KQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
DN R +M I++T+ +T I++ N+G GIP+V ++ K+++P M+F
Sbjct: 67 SDNISNRSARMTYIRVTIT-DTGEITIENDGAGIPIVRSREHKLYIPEMVF--------- 116
Query: 155 NDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEY 214
GHLLTSSNY+D+ GR+GYGAKL NI S F V C
Sbjct: 117 ----------------GHLLTSSNYDDDNQNAVAGRHGYGAKLTNILSLSFSV--CCRTN 158
Query: 215 KKSFKQVWKDNMSKVTSPEIKS-GSKD-DFTKITFTPDLTKFKM--TSLDKDMVDLITRR 270
+ F W+D+M K T+P + + G+K+ + T++ F PD +F M + DM ++ +R
Sbjct: 159 GREFHMSWQDHMRKATAPRVSNVGTKEKNVTRVKFLPDYERFGMKEKKISNDMKRVLYKR 218
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDE-DGDPVKIIYENVNP--RWEVA 327
D +A ++++ LNG K+F+DY LY+ + + P +YE+ + + +
Sbjct: 219 IMDLSAMFPNIQITLNGSSFGFKSFKDYATLYSAMTPKGEKPPPPYVYESKSGCVAFIPS 278
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEV---VKKKNKDLGC------- 377
+ P R + VN + T GG H +A D + + V +KK+NK +
Sbjct: 279 VVPGVR--RMFGVVNGVVTYNGGTHCNAAQDILTGCLDGVERELKKENKVMDTNRVLRHF 336
Query: 378 TIIMLFGN---KFNNVKNNKLQMAKTLIDIGVR--LGGMALKPFQVKNHIWIFINCLIVN 432
TI++ KF++ +L T+ + + + + PF ++ H+ I
Sbjct: 337 TILVFLVQVQPKFDSQNKARLVSTPTMPRVPRQDVMKYLLRMPF-LEAHV-----STITG 390
Query: 433 PTFDSQTKENMTLQKGSFGS--TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGL 490
KE T ++ S + T + KL DA TLI+TEGDSAK+LA + L
Sbjct: 391 QLAQELNKEIGTGRRMSSKTLLTSITKLVDATSTRRDPKHTRTLIVTEGDSAKALAQNSL 450
Query: 491 GVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRY 550
+ GVFPLRGKLLNVR K++ E+ L LGL+ K YT D LRY
Sbjct: 451 SSDQKRYTGVFPLRGKLLNVRNKNLKRLRNCKELQELFCALGLELDKDYT---DADELRY 507
Query: 551 GRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL-RLP-FLEEFITPIIKA-TKAREELSFY 607
R++IMTDQD DGSHIKGL+IN WP+LL R P F+ F TPI+KA + + +SF+
Sbjct: 508 QRILIMTDQDADGSHIKGLVINAFESLWPSLLVRNPGFISIFSTPIVKARLRDKSVVSFF 567
Query: 608 SLPEFEEWKEETTNWHTYKIKYYK 631
S+ EF +W+ N Y KYYK
Sbjct: 568 SMKEFHKWQRSNAN-TPYTCKYYK 590
Score = 65.1 bits (157), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 7/122 (5%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLP----MKP 714
++EP Y+PI+P++L NG+ GIG G+ + IP + ++ ++ MI GE + P
Sbjct: 801 QVEPNHYVPILPLLLCNGSVGIGFGFSSNIPPFHRLDVSAAVRAMISGERAKSVVRRLVP 860
Query: 715 WYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
W F+GEI + F+ G ++ +TEL WT + + + + A KD
Sbjct: 861 WAVGFQGEIRRGPEGEFIAVGTYTYCKGGRVHVTEL---PWTCSVEAFREHISYLATKDI 917
Query: 775 VH 776
V+
Sbjct: 918 VN 919
>gi|261331231|emb|CBH14221.1| DNA topoisomerase II, putative [Trypanosoma brucei gambiense
DAL972]
Length = 1221
Score = 303 bits (776), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 213/624 (34%), Positives = 322/624 (51%), Gaps = 68/624 (10%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y+K + +EH+L RP+ YIGS++ M++ + + HM + GL KI DEIL+NA
Sbjct: 7 YKKLTPIEHVLTRPEMYIGSLDTTATPMFIYDEQKGHMVWETVKLNHGLLKIVDEILLNA 66
Query: 96 CDN-KQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
DN R +M I++T+ +T I++ N+G GIP+V ++ K+++P M+F
Sbjct: 67 SDNISNRSARMTYIRVTIT-DTGEITIENDGAGIPIVRSREHKLYIPEMVF--------- 116
Query: 155 NDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEY 214
GHLLTSSNY+D+ GR+GYGAKL NI S F V C
Sbjct: 117 ----------------GHLLTSSNYDDDNQNAVAGRHGYGAKLTNILSLSFSV--CCRTN 158
Query: 215 KKSFKQVWKDNMSKVTSPEIKS-GSKD-DFTKITFTPDLTKFKM--TSLDKDMVDLITRR 270
+ F W+D+M K T+P + + G+K+ + T++ F PD +F M + DM ++ +R
Sbjct: 159 GREFHMSWQDHMRKATAPRVSNVGTKEKNVTRVKFLPDYERFGMKEKKISNDMKRVLYKR 218
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDE-DGDPVKIIYENVNP--RWEVA 327
D +A ++++ LNG K+F+DY LY+ + + P +YE+ + + +
Sbjct: 219 IMDLSAMFPNIQITLNGSSFGFKSFKDYATLYSAMTPKGEKPPPPYVYESKSGCVAFIPS 278
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEV---VKKKNKDLGC------- 377
+ P R + VN + T GG H +A D + + V +KK+NK +
Sbjct: 279 VVPGVR--RMFGVVNGVVTYNGGTHCNAAQDILTGCLDGVERELKKENKVMDTNRVLRHF 336
Query: 378 TIIMLFGN---KFNNVKNNKLQMAKTLIDIGVR--LGGMALKPFQVKNHIWIFINCLIVN 432
TI++ KF++ +L T+ + + + + PF ++ H+ I
Sbjct: 337 TILVFLVQVQPKFDSQNKARLVSTPTMPRVPRQDVMKYLLRMPF-LEAHV-----STITG 390
Query: 433 PTFDSQTKENMTLQKGSFGS--TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGL 490
KE T ++ S + T + KL DA TLI+TEGDSAK+LA + L
Sbjct: 391 QLAQELNKEIGTGRRMSSKTLLTSITKLVDATSTRRDPKHTRTLIVTEGDSAKALAQNSL 450
Query: 491 GVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRY 550
+ GVFPLRGKLLNVR K++ E+ L LGL+ K YT D LRY
Sbjct: 451 SSDQKRYTGVFPLRGKLLNVRNKNLKRLRNCKELQELFCALGLELDKDYT---DADELRY 507
Query: 551 GRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL-RLP-FLEEFITPIIKA-TKAREELSFY 607
R++IMTDQD DGSHIKGL+IN WP+LL R P F+ F TPI+KA + + +SF+
Sbjct: 508 QRILIMTDQDADGSHIKGLVINAFESLWPSLLVRNPGFISIFSTPIVKARLRDKSVVSFF 567
Query: 608 SLPEFEEWKEETTNWHTYKIKYYK 631
S+ EF +W+ N Y KYYK
Sbjct: 568 SMKEFHKWQRSNAN-TPYTCKYYK 590
Score = 69.3 bits (168), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 7/122 (5%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLP----MKP 714
++EP Y+PI+P++L NG+ GIG G+ + IP +P ++ ++ MI GE + P
Sbjct: 801 QVEPNHYVPILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRAMISGEAAKSVVRRLVP 860
Query: 715 WYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
W F+GEI + F+ G ++ +TEL WT + + + + A KD
Sbjct: 861 WAVGFQGEIRRGPEGEFIAVGTYTYCKGGRVHVTEL---PWTCSVEAFREHISYLATKDI 917
Query: 775 VH 776
V+
Sbjct: 918 VN 919
>gi|343474588|emb|CCD13796.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 1227
Score = 303 bits (775), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 218/624 (34%), Positives = 327/624 (52%), Gaps = 68/624 (10%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y+K + +EH+L RP+ YIGS++ M+L + E HM + GL KI DEIL+NA
Sbjct: 7 YKKLTPIEHVLTRPEMYIGSIDTTPTGMFLYDEEKGHMVWETVKLNHGLLKIVDEILLNA 66
Query: 96 CDN-KQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
DN R +M I++ + + I++ N+G GIP+V ++ K+++P M+F
Sbjct: 67 SDNISNRSARMTYIRVNIT-DVGEITIENDGAGIPIVRSREHKLYIPEMVF--------- 116
Query: 155 NDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEY 214
GHLLTSSNY+D+ GR+GYGAKL NI S F V SC
Sbjct: 117 ----------------GHLLTSSNYDDDNQNAVAGRHGYGAKLTNILSLNFSV--SCRTN 158
Query: 215 KKSFKQVWKDNMSKVTSPEIKS-GSKD-DFTKITFTPDLTKFKMTS--LDKDMVDLITRR 270
+ F W+D+M K T+P + + GSK+ + T++ F PD +F M + DM ++ +R
Sbjct: 159 GREFHMSWQDHMKKATAPRVSNVGSKERNITRVKFLPDYERFGMKEKKISSDMKRVLYKR 218
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY---TDRQDEDGDPVKIIYENVNPRWEVA 327
D +A ++++ LNG K+F++Y LY T R ++ P +YE+ + VA
Sbjct: 219 IMDLSAMFPNIQMTLNGTSFGFKSFKEYASLYSTPTIRGEQPPPPY--VYESRSG--CVA 274
Query: 328 IAPS-DRGFQQV-SFVNSIATTKGGRHVDAVVDAIVKQIIEV---VKKKNKDLGC----- 377
PS G +++ VN + T GG H +A + +V + V +KK+NK +
Sbjct: 275 FIPSVTPGVRRMFGVVNGVVTYNGGTHCNAAQEILVGCLDGVEKELKKENKVMDSNRVLR 334
Query: 378 --TIIMLFGN---KFNNVKNNKLQMAKTLIDIGVR--LGGMALKPFQVKNHIWIFINCLI 430
TI++ KF++ +L A T+ + + + + PF +++H+ L
Sbjct: 335 HFTILVFLVQVQPKFDSQNKARLISAPTMPRVPRQDVMKYLLRMPF-LESHVSTITGQLA 393
Query: 431 VNPTFDSQTKENMTLQKGSFGSTCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGL 490
+ T M+ K T + KL DA TLI+TEGDSAK+LA + L
Sbjct: 394 QELNREIGTGRRMS-SKALL--TSITKLVDATSTRRDPKNIRTLIVTEGDSAKALAQNSL 450
Query: 491 GVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRY 550
+ GVFPLRGKLLNVR K++ E+ L LGL+ K Y +D LRY
Sbjct: 451 SSDQKRYTGVFPLRGKLLNVRNKNLKRLRNCKELQELFCALGLELDKDY---KDADELRY 507
Query: 551 GRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL-RLP-FLEEFITPIIKA-TKAREELSFY 607
R+++MTDQD DGSHIKGL+IN WP+LL R P F+ F TPI+KA + + +SF+
Sbjct: 508 QRILVMTDQDADGSHIKGLVINAFESLWPSLLVRNPGFISIFSTPIVKARLRDKSVVSFF 567
Query: 608 SLPEFEEWKEETTNWHTYKIKYYK 631
SL EF +W++ N +Y KYYK
Sbjct: 568 SLKEFHKWQKANHNV-SYTCKYYK 590
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 7/122 (5%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLP----MKP 714
++EP Y+PI+P++L NG+ GIG G+ + IP +P ++ ++ MI GE + P
Sbjct: 801 QVEPNHYVPIVPLLLCNGSVGIGFGFASNIPPFHPLDVTAAVRAMINGESAKTVVRRLVP 860
Query: 715 WYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
W F+GEI + F+ G +++ +TEL WT + D + + A KD
Sbjct: 861 WAVGFQGEIRRGPEDEFIAVGSYNYCKGNRVHVTEL---PWTCSVEAFRDHVSNLARKDI 917
Query: 775 VH 776
VH
Sbjct: 918 VH 919
>gi|321463409|gb|EFX74425.1| hypothetical protein DAPPUDRAFT_324417 [Daphnia pulex]
Length = 1026
Score = 301 bits (772), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 187/459 (40%), Positives = 236/459 (51%), Gaps = 111/459 (24%)
Query: 1319 GGYMEAKKRKLE-----EQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAE 1373
GGYM AK KLE EQF D +F VAIFVNGYT P+AE
Sbjct: 19 GGYMAAKISKLENQYLNEQFNEVQEDDKLSNVFSNVAIFVNGYTS-----------PTAE 67
Query: 1374 ELKALMMLHGGIYHHYESSRTT-HIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL 1432
ELK LM+ +GG+YHHY +S+TT HIIASNL KIKKLK +K +KPEWIV+S+ A LL
Sbjct: 68 ELKRLMLANGGVYHHYYNSKTTTHIIASNLCDAKIKKLKGDEKFVKPEWIVESLKANMLL 127
Query: 1433 DHKKYLLYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSE 1492
D K YLLYTG L K QK ++ +S D+ E E
Sbjct: 128 DVKPYLLYTGLT---LDKGQQK---------------LDIASIQKKNDDNQTAIERKIDE 169
Query: 1493 AVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSR 1552
A +SE P+ + + K A +DFL EFY +SR
Sbjct: 170 AQSSE--------PVPPGDITR----------------HSREMKRAGEDDFLSEFYKRSR 205
Query: 1553 LHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEP 1612
LHH+STMG+ FK+YV ELREK DGVF G+E+I WK G + EET
Sbjct: 206 LHHISTMGACFKRYVTELREKSDGVFPGLESIENWKNLTGCLGNHKCEET---------- 255
Query: 1613 EPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKV--REGVDRQAEFDIYRQRT 1670
V MHIDMDCFFVSVG+R++P L +PV V H + ++ + REG +R+ EFD Y++
Sbjct: 256 --VFMHIDMDCFFVSVGLRNYPSLVGKPVVVTHARADAKPLPRREGSNREYEFDCYKEHW 313
Query: 1671 MNRMGLN--------------------------------------TREYGLGNGMFVGHA 1692
+ + + R G+ NGMF+G A
Sbjct: 314 IKKSKFSENNSNAVETVATVSDVFPRLQDLDETCSMSEIASCSYEARAAGIYNGMFMGGA 373
Query: 1693 LKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
LK CPNL +PYDFEGYKEVS LYN +A+ TL++EAVS
Sbjct: 374 LKLCPNLVAIPYDFEGYKEVSTSLYNTVAAYTLDLEAVS 412
Score = 260 bits (665), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 138/330 (41%), Positives = 202/330 (61%), Gaps = 49/330 (14%)
Query: 1875 EAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIA 1934
E Y+E V +++ + ++ + + AVSCDE+Y D + +L++ LTP +FA++L++ I
Sbjct: 388 EGYKE----VSTSLYNTVAAYTLDLEAVSCDELYADITSVLRQSGLTPAEFATHLKDVIF 443
Query: 1935 KETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFK 1994
+T C S G G N L ARLATKKAKPNG F++ + +++FM + + DLPGVG S+ +
Sbjct: 444 NKTQCNASVGMGPNMLMARLATKKAKPNGLFYINKKDMTEFMKDHKIEDLPGVGRSMAHR 503
Query: 1995 LNSLGAQTCGDLQNI--SLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVN 2052
L+ +G +TC ++Q + SL +LQ E G K G TLY CRGED + L +H RKSVSA++N
Sbjct: 504 LHGMGVRTCVEMQQVCVSLGKLQQEFGQKQGQTLYHMCRGEDKRALKTDHVRKSVSADIN 563
Query: 2053 YGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVC 2112
YGIRF N+QEM F+++L+ EV KR+EE+ ++GK +TLKL +R+ +AP E +KF+GHGVC
Sbjct: 564 YGIRFANDQEMHKFVQELSIEVSKRMEEIHVRGKLLTLKLKIRAKDAPVETAKFMGHGVC 623
Query: 2113 DYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQAS 2172
D I++S++L A RE
Sbjct: 624 DSISRSTTL------------------CSATRE-------------------------TK 640
Query: 2173 QILKEVLFIVNKLKVDPVELRGIGIQVSKL 2202
I KEV ++ +LKVD ELRG+GIQ SKL
Sbjct: 641 IIEKEVQILLKQLKVDCCELRGMGIQFSKL 670
Score = 67.0 bits (162), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 47/109 (43%), Gaps = 42/109 (38%)
Query: 1190 KNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQLISLQQDKQLPAIQVISIRSPRARPP 1249
K A +DFL EFY +SRLHH+STMG+ FK+Y
Sbjct: 189 KRAGEDDFLSEFYKRSRLHHISTMGACFKRY----------------------------- 219
Query: 1250 RRSSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEET 1298
V ELREK DGVF G+E+I WK G + EET
Sbjct: 220 -------------VTELREKSDGVFPGLESIENWKNLTGCLGNHKCEET 255
Score = 45.1 bits (105), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 1808 LSSNVSLQEMRTMLREWMCESQ-PEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
LS SL E+R +L EW + PE D E S +L++LV + L+ I ++ FL+R G
Sbjct: 931 LSGATSLPEIRQLLIEWFSSTDVPENEDCEAVSSFLASLVNNKELHKIEPIILFLKRR-G 989
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVS 1903
+ W A +++++ Q + ++ K+ S VS
Sbjct: 990 SDINDSWKRAIEDIINNTQLYVIQHYNAPLKLPSPVS 1026
>gi|325588260|gb|ADZ31962.1| DNA topoisomerase II [Trypanosoma rangeli]
Length = 1224
Score = 301 bits (771), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 210/625 (33%), Positives = 324/625 (51%), Gaps = 70/625 (11%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y+K + ++H+L+RP+ Y+GSVE I+ M++ + + M + GL K+ DEIL+NA
Sbjct: 7 YKKLTPIDHVLVRPEMYVGSVETISTAMFVFDHDKGRMVWDTVKLNHGLLKVVDEILLNA 66
Query: 96 CDN-KQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
DN + +M I++ + E I++ N+G GIP+V K+ K+++P M+F
Sbjct: 67 SDNLANKSARMTYIRVHIT-EFGEITIENDGAGIPIVRSKEHKLYIPEMVF--------- 116
Query: 155 NDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEY 214
GHLLTSSNY+D GR+GYGAKL NI S +F V C
Sbjct: 117 ----------------GHLLTSSNYDDASQSTVAGRHGYGAKLTNILSHRFSV--FCRTK 158
Query: 215 KKSFKQVWKDNMSKVTSPEIKSGS--KDDFTKITFTPDLTKF--KMTSLDKDMVDLITRR 270
+ F W+D+M K T+P + +G + + T++ F PD +F K + DM ++ +R
Sbjct: 159 GREFHMTWQDHMRKATAPRVSNGDPKEKNVTRVKFLPDYERFGLKENKISHDMKRVLHKR 218
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVAIA 329
D AA ++++ LNG K+F DY LY T + P +YE+ N +A
Sbjct: 219 VMDLAAMFPNIEISLNGVPFGFKSFHDYALLYSTPIAGGERPPAPFVYESRNG--AIAFV 276
Query: 330 PS-DRGFQQV-SFVNSIATTKGGRHVDAVVDAI---VKQIIEVVKKKNKDLGC------- 377
PS G +++ S VN + T GG H +A D + ++ + +KK+NK +
Sbjct: 277 PSLTAGIRRIFSVVNGVVTHNGGTHCNAAQDILQSSLEYVERALKKENKVIDTNRVLRHF 336
Query: 378 TIIMLFGN---KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKN-HIWIFINCLI--V 431
TI++ +F++ +L A T+ R+ L F ++ ++ +N + +
Sbjct: 337 TILVFLVQVQPRFDSQNKARLVSAPTM----PRVPSQELTEFLLRMPYLEAHVNTMTGQL 392
Query: 432 NPTFDSQTKENMTLQKGSFGSTCVPKLEDANDAGTKNSIDC--TLILTEGDSAKSLAVSG 489
+ + + S S+ + KL DA T+ C TLI+TEGDSAK+LA +
Sbjct: 393 AQELNKEIGAGRRMSSKSLISS-ITKLVDATT--TRRDPKCVRTLIVTEGDSAKALAQNS 449
Query: 490 LGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLR 549
L + GV+PLRGKLLNVR +++ E+ L LGL+ K Y ++ LR
Sbjct: 450 LTSDQKRYTGVYPLRGKLLNVRNKNLRRLKNRKELQELFCALGLELEKVYKGADE---LR 506
Query: 550 YGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL-RLP-FLEEFITPIIKA-TKAREELSF 606
Y RL++MTDQD DGSHIKGL+IN WP+LL R P F+ F TPI+K + + SF
Sbjct: 507 YQRLLLMTDQDADGSHIKGLVINAFESLWPSLLIRNPGFISIFSTPIVKVRLRDKSTHSF 566
Query: 607 YSLPEFEEWKEETTNWHTYKIKYYK 631
+SL EF +W++ N Y KYYK
Sbjct: 567 FSLKEFHKWQKMHGNV-PYTAKYYK 590
Score = 72.0 bits (175), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP----LPMKP 714
++EP Y+PI+P++L NG+ GIG G+ + IP +P ++ ++ MI GE + P
Sbjct: 801 QVEPNHYVPILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRSMINGESAKVVVRRLVP 860
Query: 715 WYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
W ++GEI + F+ G D ++ +TEL WT + + H A KD
Sbjct: 861 WAVGYQGEIRRGPEGEFIAAGSYNYYLDGRVHVTEL---PWTLSIEAFRGHISHLASKDV 917
Query: 775 V 775
V
Sbjct: 918 V 918
>gi|267151|sp|P30190.1|TOP2_TRYCR RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
II
gi|162307|gb|AAA85575.1| DNA topoisomerase II [Trypanosoma cruzi]
gi|737876|prf||1923363A DNA topoisomerase II
Length = 1232
Score = 301 bits (770), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 212/632 (33%), Positives = 324/632 (51%), Gaps = 80/632 (12%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y+K + ++H+L+RP+ Y+GSV+ + +M++ + E M + GL KI DEIL+NA
Sbjct: 7 YKKLTPIDHVLIRPEMYVGSVDTSSSSMFVFDHEKGRMVWESLKVNHGLLKIVDEILLNA 66
Query: 96 CDN-KQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
DN + +M I++ + E I++ N+G GIP+V K+ K+++P M+F
Sbjct: 67 SDNIANKGGRMTYIRVHIT-EAGEITIENDGAGIPIVRSKEHKLYIPEMVF--------- 116
Query: 155 NDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEY 214
GHLLTSSNY+D GR+GYGAKL NI S +F V C
Sbjct: 117 ----------------GHLLTSSNYDDTSQNAVAGRHGYGAKLTNILSHRFSV--CCRTK 158
Query: 215 KKSFKQVWKDNMSKVTSPEIKSGS--KDDFTKITFTPDLTKFKMTS--LDKDMVDLITRR 270
K F W D+M + T+P + + + + T++ F PD +F + + + DM ++ +R
Sbjct: 159 GKEFHMSWHDHMRRATAPRVSNVDPKEKNLTRVKFLPDYERFGLDANKISHDMKRVLHKR 218
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD-RQDEDGDPVKIIYENVNPRWEVAIA 329
D AA +++ LNG K+F DY LY+ + P +YE+ N +A
Sbjct: 219 IMDLAAMFPSIEISLNGVPFAFKSFADYAMLYSSPSSSGEMPPAPFVYESRNG--AIAFI 276
Query: 330 PS-DRGFQQV-SFVNSIATTKGGRHVDA---VVDAIVKQIIEVVKKKNKDLGCT------ 378
PS G +++ VN + T GG H +A V+ + ++ + + +KK NK +
Sbjct: 277 PSLTAGTRRIFGVVNGVVTHNGGTHCNAAQEVLQSSLESVEKALKKDNKVIDTNRVLRHF 336
Query: 379 IIMLF----GNKFNNVKNNKLQMAKT--------LIDIGVRLGGMALKPFQVKNHIWIFI 426
+I++F KF++ +L T L+D +R+ PF ++ H+
Sbjct: 337 MILVFLVQVQPKFDSQNKARLVSVPTMPRVPRQELMDFLLRM------PF-LEAHV---- 385
Query: 427 NCLIVNPTFDSQTKENMTLQKGSFGS--TCVPKLEDANDAGTKNSIDCTLILTEGDSAKS 484
+ D KE ++ S S + + KL DA TLI+TEGDSAK+
Sbjct: 386 -NTVTGQLADELNKEMGAGRRMSSKSLISSITKLVDATTTRRDPRFVRTLIVTEGDSAKA 444
Query: 485 LAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVED 544
LA + L + GVFPLRGKLLNVR K++ E+ L LGL+ K Y +D
Sbjct: 445 LAQNSLSSDQKRYTGVFPLRGKLLNVRNKNLKRLKNCKELQELFCALGLELGKIY---KD 501
Query: 545 MKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL-RLP-FLEEFITPIIKA-TKAR 601
+ LRY RL++MTDQD DGSHIKGL+IN WP+LL R P F+ F TPI+K + +
Sbjct: 502 AEELRYQRLLVMTDQDADGSHIKGLVINAFEALWPSLLNRNPGFISIFSTPIVKVRLRDK 561
Query: 602 EELSFYSLPEFEEWKEETTNWHTYKIKYYKVV 633
SF+SL EF +W++ N +Y KYYK +
Sbjct: 562 STHSFFSLKEFHKWQKTHGNV-SYTAKYYKAL 592
Score = 69.3 bits (168), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP----LPMKP 714
++EP Y+PI+P++L NG+ GIG G+ + IP +P ++ ++ MI GE + P
Sbjct: 801 QVEPNHYVPILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRSMINGEAAKVVVRRLVP 860
Query: 715 WYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
W ++GE+ + F+ G D ++ +TE+ WT + D + A KD
Sbjct: 861 WAVGYQGEVRRGPEGEFIAAGSYQYYVDGRVHVTEI---PWTLSIEAFRDHISVLASKDV 917
Query: 775 V 775
V
Sbjct: 918 V 918
>gi|310831315|ref|YP_003969958.1| putative DNA topoisomerase IIA precursor [Cafeteria roenbergensis
virus BV-PW1]
gi|309386499|gb|ADO67359.1| putative DNA topoisomerase IIA precursor [Cafeteria roenbergensis
virus BV-PW1]
Length = 1488
Score = 301 bits (770), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 187/479 (39%), Positives = 254/479 (53%), Gaps = 90/479 (18%)
Query: 199 NIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTS 258
N++S KF +E KK F Q+W+DNMS V P++ S S F K+T PDL +FK+ S
Sbjct: 530 NVWSKKFEIEVQDKTNKKHFHQIWEDNMSVVNKPKVTSKSTKSFVKVTCYPDLERFKIKS 589
Query: 259 LDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYE 318
L K + L +RAYD A +T+ VKV NG + VKN QD++ LY D KI+ +
Sbjct: 590 LKKHL-PLFEKRAYDLALTTEKVKVKFNGSLINVKNMQDFMDLYFP------DTAKIV-D 641
Query: 319 NVNPRWEVA-IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGC 377
NPR V I D G + +S+VN I + +GG H + +VD +VK +I KK
Sbjct: 642 TSNPRMHVGCIYLPDVGHESISYVNGICSYRGGTHCNYIVDMVVKSLINDYIKK------ 695
Query: 378 TIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDS 437
+ + + P +K+++ FIN +I NP+F S
Sbjct: 696 -----------------------------KDKDIKISPALIKDNLVFFINSVIDNPSFSS 726
Query: 438 QTKENMTLQKGSFGSTC------------------------------------------- 454
Q+KE +T + FG+
Sbjct: 727 QSKETLTTKPSDFGTVYKLNKTFMTKLSKSGIIKQIISLAKFKESVKMTKTDGRKTTVIR 786
Query: 455 -VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREA 513
+PKLEDAN AGTK++ C L L EGDSA S+ +SGL R+ YG FPL+GKLLNVREA
Sbjct: 787 GIPKLEDANKAGTKDAHKCGLYLAEGDSALSMILSGLSSKDRNFYGAFPLKGKLLNVREA 846
Query: 514 THKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINF 573
+ KQI+ N EI+NL KILGL+ KY E+ TLRYG+++I+ D D DGSHIKGLI+N
Sbjct: 847 SVKQIMGNDEISNLKKILGLRNEFKYEMDEEFNTLRYGKVIILCDSDVDGSHIKGLILNM 906
Query: 574 IHHNWPTLL-RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
H WP LL R F+ TPI+KATK +E L FY+L +++ W+ + N Y IKYYK
Sbjct: 907 FHSMWPNLLKREGFITTMNTPIVKATKGKEILKFYNLTDYDNWRND-NNTKGYYIKYYK 964
Score = 142 bits (357), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 91/129 (70%), Gaps = 3/129 (2%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K SQ EHILLRP YIGSV TE MWL E N M++++IT++PGLYKI+DEI+VNA
Sbjct: 6 YDKVSQREHILLRPGMYIGSVSKNTEPMWLY--EDNKMQKKDITFIPGLYKIYDEIIVNA 63
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNG-KGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
D+ D N I+I VN + SV+NNG +GIPV EH+ K +P+MIFG LLTSSNY
Sbjct: 64 RDHSINDKSCNSIEIEVNTDEGYFSVYNNGDEGIPVKEHETHKTLIPSMIFGELLTSSNY 123
Query: 155 NDEEDKVTG 163
+D + + TG
Sbjct: 124 DDSKKRTTG 132
Score = 104 bits (260), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 76/108 (70%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPE+Y+PIIPM+LVNGA GIGTG+ T IP ++P+E+++ +K++I+GE + P+Y F
Sbjct: 1183 VEPEFYLPIIPMILVNGATGIGTGFSTSIPCYHPQELIEVLKKLIKGEKYKKIHPYYHKF 1242
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
+G++ + + V+G I + + + EL VG+WTT+YK L+ +L
Sbjct: 1243 EGKLKKLDTTSYQVSGTYHIDKKNNIVVEELPVGEWTTNYKQFLEKML 1290
>gi|339717598|pdb|3QX3|A Chain A, Human Topoisomerase Iibeta In Complex With Dna And
Etoposide
gi|339717599|pdb|3QX3|B Chain B, Human Topoisomerase Iibeta In Complex With Dna And
Etoposide
Length = 803
Score = 300 bits (769), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 134/177 (75%), Positives = 161/177 (90%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+PKL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+
Sbjct: 36 IPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREAS 95
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
HKQI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFI
Sbjct: 96 HKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFI 155
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
HHNWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 156 HHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 212
Score = 149 bits (376), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 433 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 492
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 493 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 547
Score = 67.8 bits (164), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 7/89 (7%)
Query: 824 ERQERQAAEGE----DDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKM 879
E QE+ A E E D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K
Sbjct: 690 EAQEKAAEEDETQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKG 747
Query: 880 TELNILKKKAPTDLWSDDLDALREK-DKI 907
E+N LK+K+P+DLW +DL A E+ DK+
Sbjct: 748 REVNDLKRKSPSDLWKEDLAAFVEELDKV 776
>gi|407844394|gb|EKG01941.1| mitochondrial DNA topoisomerase II, putative [Trypanosoma cruzi]
Length = 1231
Score = 300 bits (769), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 212/630 (33%), Positives = 323/630 (51%), Gaps = 80/630 (12%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y+K + ++H+L+RP+ Y+GSV+ + +M++ + E M + GL KI DEIL+NA
Sbjct: 7 YKKLTPIDHVLIRPEMYVGSVDTSSSSMFVFDHEKGRMVWESLKVNHGLLKIVDEILLNA 66
Query: 96 CDN-KQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
DN + +M I++ + E I++ N+G GIP+V K+ K+++P M+F
Sbjct: 67 SDNIANKGGRMTYIRVHIT-EAGEITIENDGAGIPIVRSKEHKLYIPEMVF--------- 116
Query: 155 NDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEY 214
GHLLTSSNY+D GR+GYGAKL NI S +F V C
Sbjct: 117 ----------------GHLLTSSNYDDTSQNAVAGRHGYGAKLTNILSHRFSV--CCRTK 158
Query: 215 KKSFKQVWKDNMSKVTSPEIKSGS--KDDFTKITFTPDLTKFKMTS--LDKDMVDLITRR 270
K F W D+M + T+P + + + + T++ F PD +F + + + DM ++ +R
Sbjct: 159 GKEFHMSWHDHMRRATAPRVSNVDPKEKNLTRVKFLPDYERFGLDANKISHDMKRVLHKR 218
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD-RQDEDGDPVKIIYENVNPRWEVAIA 329
D AA +++ LNG K+F DY LY+ + P +YE+ N +A
Sbjct: 219 IMDLAAMFPSIEISLNGVPFAFKSFADYAMLYSSPSSSGEMPPAPFVYESRNG--AIAFI 276
Query: 330 PS-DRGFQQV-SFVNSIATTKGGRHVDA---VVDAIVKQIIEVVKKKNKDLGCT------ 378
PS G +++ VN + T GG H +A V+ + ++ + + +KK NK +
Sbjct: 277 PSLTAGTRRIFGVVNGVVTHNGGTHCNAAQEVLQSSLESVEKALKKDNKVIDTNRVLRHF 336
Query: 379 IIMLF----GNKFNNVKNNKLQMAKT--------LIDIGVRLGGMALKPFQVKNHIWIFI 426
+I++F KF++ +L T L+D +R+ PF ++ H+
Sbjct: 337 MILVFLVQVQPKFDSQNKARLVSVPTMPRVPRQELMDFLLRM------PF-LEAHV---- 385
Query: 427 NCLIVNPTFDSQTKENMTLQKGSFGS--TCVPKLEDANDAGTKNSIDCTLILTEGDSAKS 484
+ D KE ++ S S + + KL DA TLI+TEGDSAK+
Sbjct: 386 -NTVTGQLADELNKEMGAGRRMSSKSLISSITKLVDATTTRRDPRFVRTLIVTEGDSAKA 444
Query: 485 LAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVED 544
LA + L + GVFPLRGKLLNVR K++ E+ L LGL+ K Y +D
Sbjct: 445 LAQNSLSSDQKRYTGVFPLRGKLLNVRNKNLKRLKNCKELQELFCALGLELGKIY---KD 501
Query: 545 MKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL-RLP-FLEEFITPIIKA-TKAR 601
+ LRY RL++MTDQD DGSHIKGL+IN WP+LL R P F+ F TPI+K + +
Sbjct: 502 AEELRYQRLLVMTDQDADGSHIKGLVINAFEALWPSLLNRNPGFISIFSTPIVKVRLRDK 561
Query: 602 EELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
SF+SL EF +W++ N +Y KYYK
Sbjct: 562 STHSFFSLKEFHKWQKTHGNV-SYTAKYYK 590
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP----LPMKP 714
++EP Y+PI+P++L NG+ GIG G+ + IP +P ++ ++ MI GE + P
Sbjct: 801 QVEPNHYVPILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRSMINGEAAKVVVRRLVP 860
Query: 715 WYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
W ++GE+ + F+ G D ++ +TE+ WT + D + A KD
Sbjct: 861 WAVGYQGEVRRGPEGEFIAAGSYQYYVDGRVHVTEI---PWTLSIEAFRDHISVLASKDV 917
Query: 775 V 775
V
Sbjct: 918 V 918
>gi|71650226|ref|XP_813815.1| mitochondrial DNA topoisomerase II [Trypanosoma cruzi strain CL
Brener]
gi|70878735|gb|EAN91964.1| mitochondrial DNA topoisomerase II, putative [Trypanosoma cruzi]
Length = 1230
Score = 300 bits (768), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 212/630 (33%), Positives = 322/630 (51%), Gaps = 80/630 (12%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y+K + ++H+L+RP+ Y+GSV+ + +M++ + E M + GL KI DEIL+NA
Sbjct: 7 YKKLTPIDHVLIRPEMYVGSVDTSSSSMFVFDHEKGRMVWESLKVNHGLLKIVDEILLNA 66
Query: 96 CDN-KQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
DN + +M I++ + E I++ N+G GIP+V K+ K+++P M+F
Sbjct: 67 SDNIANKGGRMTYIRVHIT-EAGEITIENDGAGIPIVRSKEHKLYIPEMVF--------- 116
Query: 155 NDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEY 214
GHLLTSSNY+D GR+GYGAKL NI S +F V C
Sbjct: 117 ----------------GHLLTSSNYDDTSQNAVAGRHGYGAKLTNILSHRFSV--CCRTK 158
Query: 215 KKSFKQVWKDNMSKVTSPEIKSGS--KDDFTKITFTPDLTKFKMTS--LDKDMVDLITRR 270
K F W D+M + T+P + + + + T++ F PD +F + + + DM ++ +R
Sbjct: 159 GKEFHMSWHDHMRRATAPRVSNVDPREKNLTRVKFLPDYERFGLDANKISHDMKRVLHKR 218
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD-RQDEDGDPVKIIYENVNPRWEVAIA 329
D AA +++ LNG K+F DY LY+ + P +YE+ N +A
Sbjct: 219 IMDLAAMFPSIEISLNGVPFAFKSFADYAMLYSSPTSSGEMPPAPFVYESRNG--AIAFI 276
Query: 330 PS-DRGFQQV-SFVNSIATTKGGRHVDA---VVDAIVKQIIEVVKKKNKDLGC------- 377
PS G +++ VN + T GG H +A V+ + ++ + + +KK NK +
Sbjct: 277 PSLTAGTRRIFGVVNGVVTHNGGTHCNAAQEVLQSSLENVEKALKKDNKVIDTNRVLRHF 336
Query: 378 TIIMLFGN---KFNNVKNNKLQMAKT--------LIDIGVRLGGMALKPFQVKNHIWIFI 426
TI++ KF++ +L T L+D +R+ PF ++ H+
Sbjct: 337 TILVFLVQVQPKFDSQNKARLVSVPTMPRVPRQELMDFLLRM------PF-LEAHV---- 385
Query: 427 NCLIVNPTFDSQTKENMTLQKGSFGS--TCVPKLEDANDAGTKNSIDCTLILTEGDSAKS 484
+ D KE ++ S S + + KL DA TLI+TEGDSAK+
Sbjct: 386 -NTVTGQLADELNKEMGAGRRMSSKSLISSITKLVDATTTRRDPRFVRTLIVTEGDSAKA 444
Query: 485 LAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVED 544
LA + L + GVFPLRGKLLNVR K++ E+ L LGL+ K Y +D
Sbjct: 445 LAQNSLSSDQKRYTGVFPLRGKLLNVRNKNLKRLKNCKELQELFCALGLELGKIY---KD 501
Query: 545 MKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL-RLP-FLEEFITPIIKA-TKAR 601
+ LRY RL++MTDQD DGSHIKGL+IN WP+LL R P F+ F TPI+K + +
Sbjct: 502 AEELRYQRLLVMTDQDADGSHIKGLVINAFEALWPSLLNRNPGFISIFSTPIVKVRLRDK 561
Query: 602 EELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
SF+SL EF +W++ N +Y KYYK
Sbjct: 562 STHSFFSLKEFHKWQKTHGNV-SYTAKYYK 590
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP----LPMKP 714
++EP Y+PI+P++L NG+ GIG G+ + IP +P ++ ++ MI GE + P
Sbjct: 801 QVEPNHYVPILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRSMINGEAAKVVVRRLVP 860
Query: 715 WYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
W ++GE+ + F+ G D ++ +TE+ WT + D + A KD
Sbjct: 861 WAVGYQGEVRRGPEGEFIAAGSYQYYVDGRVHVTEI---PWTLSIEAFRDHISVLASKDV 917
Query: 775 V 775
V
Sbjct: 918 V 918
>gi|328776549|ref|XP_001122578.2| PREDICTED: DNA repair protein REV1 [Apis mellifera]
Length = 1118
Score = 298 bits (763), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 185/438 (42%), Positives = 258/438 (58%), Gaps = 70/438 (15%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSR-GGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
GGYM AK+ KLEEQF+ EAN + + IF+G+AIFVNGYT P+A+EL+
Sbjct: 19 GGYMAAKQAKLEEQFKNEANKEIKTSNIFKGIAIFVNGYTN-----------PTADELRH 67
Query: 1378 LMMLHGGIYHHYESSR-TTHIIASNLPHTKI---KKLKPGDKIIKPEWIVDSISAGKLLD 1433
LMM+HGGIYHHY + TTHIIASNLP++KI KK + I KPEWIVDSI A ++L+
Sbjct: 68 LMMVHGGIYHHYMRPKATTHIIASNLPYSKIILYKKSQNPIPICKPEWIVDSIKASRILN 127
Query: 1434 HKKYLLYT-GTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSE 1492
+ YLLY+ T+ +P K + ++ T+ + + ++ +T+ + + TE K
Sbjct: 128 FQNYLLYSHCTNVQPQLKYIIQNIRNETDVFETHNDM-QKNNEVTTLKNDNNITEAIKYT 186
Query: 1493 AVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSR 1552
++ ++ + PI SK A+STKN +F+ EFYN SR
Sbjct: 187 SI----KENISILPINSKD--------------------ANSTKNP---EFIKEFYNHSR 219
Query: 1553 LHHLSTMGSMFKQYVNELREKHDGVFRGI----------EAIRKWKTSLGITEDE-DLEE 1601
LHH+STMG+ FK+YVNELR+K++G F G + + L I + DL+E
Sbjct: 220 LHHISTMGTTFKEYVNELRDKNNGEFPGFIKLKKLKDKKLNRLLFDSQLSINNELIDLQE 279
Query: 1602 TFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQA 1661
+N + VIMHIDMDCFFVSVG+R PEL+ PVAV H KGN + V +++Q
Sbjct: 280 ---ENKIDINQDCVIMHIDMDCFFVSVGLRDKPELKGLPVAVTHAKGNKNSV--NINKQT 334
Query: 1662 EFDIYRQRTMNRMGLN--------TREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVS 1713
D + R + L+ R+ G+ NGMF+G ALK CP+L+ +PY+FEGY +VS
Sbjct: 335 -LDDNKNRDEEQCSLSEIASCSYEARKAGVKNGMFLGEALKICPDLRTIPYNFEGYTKVS 393
Query: 1714 YCLYNLIASLTLNIEAVS 1731
Y LY+ +AS TL+IEAVS
Sbjct: 394 YILYDTVASYTLDIEAVS 411
Score = 253 bits (647), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 137/324 (42%), Positives = 197/324 (60%), Gaps = 54/324 (16%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEMY DC+++L+E LTP++FA+ +R+ I ++TGC STGFG NKL ARLAT+K
Sbjct: 407 IEAVSCDEMYADCTKILEESGLTPMEFATIIRQEIKEKTGCPVSTGFGRNKLLARLATRK 466
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKPNGQF++ + I++ + + + DLPGVG + KLN++ +TC +LQ K L +
Sbjct: 467 AKPNGQFYIQQEHINNCISSFNVQDLPGVGWTTTHKLNNINIRTCAELQ----KSLDDY- 521
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
K+ LY C G D+ +L EH RKSVSAEVNYGIRF++N++ FLK+L+ EV RL
Sbjct: 522 --KDXEILYNMCGGIDNSKLNLEHIRKSVSAEVNYGIRFESNEDAIDFLKKLSHEVYNRL 579
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVR 2138
+ KG+CITLK+++R+ EAP+E KF+GHG+CDY+TKS +
Sbjct: 580 NKANAKGRCITLKVLIRAKEAPKETEKFMGHGLCDYVTKSKNFI---------------- 623
Query: 2139 SAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQ 2198
AP I+ I KEV+ + N+++ P + RGIGIQ
Sbjct: 624 ---AP------------------------INDVDIITKEVIILWNQMQKIPEDARGIGIQ 656
Query: 2199 VSKLE---HQSKTLATIDTFFTNK 2219
+S+LE ++S+ T+ F NK
Sbjct: 657 ISRLEILKNKSRN-TTLTNFIKNK 679
Score = 55.5 bits (132), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 32/39 (82%), Gaps = 3/39 (7%)
Query: 1186 ASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
A+STKN +F+ EFYN SRLHH+STMG+ FK+YVN+L
Sbjct: 202 ANSTKNP---EFIKEFYNHSRLHHISTMGTTFKEYVNEL 237
>gi|71666676|ref|XP_820295.1| mitochondrial DNA topoisomerase II [Trypanosoma cruzi strain CL
Brener]
gi|70885633|gb|EAN98444.1| mitochondrial DNA topoisomerase II, putative [Trypanosoma cruzi]
Length = 1231
Score = 298 bits (762), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 210/628 (33%), Positives = 320/628 (50%), Gaps = 76/628 (12%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y+K + ++H+L+RP+ Y+GSV+ + +M++ + E M + GL KI DEIL+NA
Sbjct: 7 YKKLTPIDHVLIRPEMYVGSVDTSSSSMFVFDHEKGRMVWESLKVNHGLLKIVDEILLNA 66
Query: 96 CDN-KQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
DN + +M I++ + E I++ N+G GIP+V K+ K+++P M+F
Sbjct: 67 SDNIANKGGRMTYIRVHIT-EAGEITIENDGAGIPIVRSKEHKLYIPEMVF--------- 116
Query: 155 NDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEY 214
GHLLTSSNY+D GR+GYGAKL NI S +F V C
Sbjct: 117 ----------------GHLLTSSNYDDTSQNAVAGRHGYGAKLTNILSHRFSV--CCRTK 158
Query: 215 KKSFKQVWKDNMSKVTSPEIKSGS--KDDFTKITFTPDLTKFKMTS--LDKDMVDLITRR 270
K F W D+M + T+P + + + + T++ F PD +F + + + DM ++ +R
Sbjct: 159 GKEFHMSWHDHMRRATAPRVSNVDPRERNLTRVKFLPDYERFGLDANKISHDMKRVLHKR 218
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD-RQDEDGDPVKIIYENVNPRWEVAIA 329
D AA +++ LNG K+F DY LY+ + P +YE+ N +A
Sbjct: 219 IMDLAAMFPSIEISLNGVPFAFKSFADYAMLYSSPTSSGEMPPAPFVYESRNG--AIAFI 276
Query: 330 PS-DRGFQQV-SFVNSIATTKGGRHVDA---VVDAIVKQIIEVVKKKNKDLGC------- 377
PS G +++ VN + T GG H +A V+ + ++ + + +KK NK +
Sbjct: 277 PSLTAGTRRIFGVVNGVVTHNGGTHCNAAQEVLQSSLENVEKALKKDNKVIDTNRVLRHF 336
Query: 378 TIIMLFGN---KFNNVKNNKLQMAKT--------LIDIGVRLGGMALKPFQVKNHIWIFI 426
TI++ KF++ +L T L+D +R+ PF ++ H+
Sbjct: 337 TILVFLVQVQPKFDSQNKARLVSVPTMPRVPKQELMDFLLRM------PF-LEAHVNTVT 389
Query: 427 NCLIVNPTFDSQTKENMTLQKGSFGSTCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLA 486
L + + + S S+ + KL DA TLI+TEGDSAK+LA
Sbjct: 390 GQLA--QELNKEMGAGRRMSSKSLISS-ITKLVDATTTRRDPRFVRTLIVTEGDSAKALA 446
Query: 487 VSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMK 546
+ L + GVFPLRGKLLNVR K++ E+ L LGL+ K Y +D +
Sbjct: 447 QNSLSSDQKRYTGVFPLRGKLLNVRNKNLKRLKNCKELQELFCALGLELGKIY---KDAE 503
Query: 547 TLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL-RLP-FLEEFITPIIKA-TKAREE 603
LRY RL++MTDQD DGSHIKGL+IN WP+LL R P F+ F TPI+K + +
Sbjct: 504 ELRYQRLLVMTDQDADGSHIKGLVINAFEALWPSLLNRNPGFISIFSTPIVKVRLRDKST 563
Query: 604 LSFYSLPEFEEWKEETTNWHTYKIKYYK 631
SF+SL EF +W++ N +Y KYYK
Sbjct: 564 HSFFSLKEFHKWQKTHGNV-SYTAKYYK 590
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP----LPMKP 714
++EP Y+PI+P++L NG+ GIG G+ + IP +P ++ ++ MI GE + P
Sbjct: 801 QVEPNHYVPILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRSMINGEAAKVVVRRLVP 860
Query: 715 WYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
W ++GE+ + F+ G D ++ +TE+ WT + D + A KD
Sbjct: 861 WAVGYQGEVRRGPEGEFIAAGSYQYYVDGRVHVTEI---PWTLSIEAFRDHISVLASKDV 917
Query: 775 V 775
V
Sbjct: 918 V 918
>gi|400260973|pdb|4FM9|A Chain A, Human Topoisomerase Ii Alpha Bound To Dna
Length = 763
Score = 297 bits (761), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 134/177 (75%), Positives = 159/177 (89%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+PKL+DANDAG +NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+
Sbjct: 8 IPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREAS 67
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
HKQI+ENAEINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFI
Sbjct: 68 HKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFI 127
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
HHNWP+LLR FLEEFITPI+K +K ++E++FYSLPEFEEWK T N +K+KYYK
Sbjct: 128 HHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYK 184
Score = 152 bits (384), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + REIV+NI+R++ GE+PLPM P YKN
Sbjct: 405 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEEPLPMLPSYKN 464
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V++GE+AIL+ +EI+EL V WT YK+ L+ +L+G EK
Sbjct: 465 FKGTIEELAPNQYVISGEVAILNSTTIEISELPVRTWTQTYKEQVLEPMLNGTEK 519
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 847 DPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
D ++YLL M W LT E+K+EL + R++K EL+ LK+K+P+DLW +DL E+
Sbjct: 690 DSGPTFNYLLDMPLWYLTKEKKDELCRLRNEKEQELDTLKRKSPSDLWKEDLATFIEE 747
>gi|340378393|ref|XP_003387712.1| PREDICTED: DNA topoisomerase 2-beta-like [Amphimedon queenslandica]
Length = 996
Score = 295 bits (755), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 148/251 (58%), Positives = 178/251 (70%), Gaps = 27/251 (10%)
Query: 27 ANK-MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLY 85
ANK +SVE+IYQKK+QLEHILLRPD+Y+GSVE ++ +W+ + E N + +R+ITYVPGLY
Sbjct: 10 ANKRLSVERIYQKKTQLEHILLRPDSYVGSVEEASDLLWVYDDERNAIVQRQITYVPGLY 69
Query: 86 KIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIF 145
KIFDEILVNA DNKQRD KMN IKI ++ E N ISVWNNG GIPV H EK +VP +IF
Sbjct: 70 KIFDEILVNAADNKQRDSKMNTIKIVIDPENNVISVWNNGAGIPVEMHAVEKKYVPELIF 129
Query: 146 GHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF 205
G LLTSSN+N D++ KVTGGRNGYGAKLCNIFS++F
Sbjct: 130 GTLLTSSNFN-------------------------DDQKKVTGGRNGYGAKLCNIFSTEF 164
Query: 206 VVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVD 265
VET+ S K FKQ W++NM V + SK DFTKITF PDL KFKM+ L+KD+V
Sbjct: 165 TVETASSASGKQFKQTWQNNMD-VAGKNTVTVSKKDFTKITFKPDLAKFKMSHLNKDIVS 223
Query: 266 LITRRAYDAAA 276
L+TRRAYD A
Sbjct: 224 LMTRRAYDIAG 234
Score = 144 bits (364), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/114 (57%), Positives = 83/114 (72%), Gaps = 1/114 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY PIIPMVLVNGAEGIGTG+ T +PN+NPREIV NIKRM+ G +P MKPWYKNF
Sbjct: 349 IEPEWYCPIIPMVLVNGAEGIGTGYSTSVPNYNPREIVANIKRMLNGMEPEGMKPWYKNF 408
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
G I +++V G++ +L + EITEL + WT YK+ L+ LL+G +K
Sbjct: 409 CGTIAPVEPHKYMVFGQVGLLGSNSFEITELPIKTWTQTYKENVLEGLLYGNDK 462
Score = 65.9 bits (159), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 42/65 (64%), Gaps = 5/65 (7%)
Query: 842 TQEEEDPDK-----DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSD 896
T EEED + DY+YLL M FWS+T E+ ELL+ RD K+ EL LK K+ TDLW
Sbjct: 612 TVEEEDIENTDNGLDYNYLLSMQFWSVTKEKAEELLQTRDKKVEELEELKGKSATDLWKI 671
Query: 897 DLDAL 901
DLD+
Sbjct: 672 DLDSF 676
>gi|350426325|ref|XP_003494404.1| PREDICTED: DNA repair protein REV1-like [Bombus impatiens]
Length = 1105
Score = 293 bits (750), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 171/426 (40%), Positives = 240/426 (56%), Gaps = 63/426 (14%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSR-GGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
GGYM AK+ KLEEQF EA+++ + IF+G+AIFVNGYT P+A+EL+
Sbjct: 19 GGYMAAKQAKLEEQFHNEADNEIKTSNIFEGIAIFVNGYTN-----------PTADELRH 67
Query: 1378 LMMLHGGIYHHYESSR-TTHIIASNLPHTKIKKLKPGDK---IIKPEWIVDSISAGKLLD 1433
LMM HGG YHHY + TTHIIASNLP++KI + I K EWI+DSI AG++L+
Sbjct: 68 LMMQHGGTYHHYMRPKATTHIIASNLPYSKIMLYRKSQNPIPICKSEWIMDSIKAGRILN 127
Query: 1434 HKKYLLYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSEA 1493
+KYLLY+ C+ ++ + ++T ++ +
Sbjct: 128 FQKYLLYSH----------------------CTDVQLQLKCAIQNTGNKTNDTFQTHNVQ 165
Query: 1494 VNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRL 1553
N+E + + N +T+K + T N P + T + N +F+ EFYN SRL
Sbjct: 166 RNNEVNSLKIGN--SRTETIKHTSIQENTFNPVLPM-SSRDTHSTKNSEFISEFYNNSRL 222
Query: 1554 HHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDE--------DLEETFSD 1605
HH++TMG+ FK+YVNELR+K++G F G+ ++ + + + + DL+E +
Sbjct: 223 HHIATMGATFKEYVNELRDKNNGEFPGLIRLKNIRLNRSLFGSQLEFNIVPNDLQE---E 279
Query: 1606 NPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDI 1665
N + +IMHIDMDCFFVSVG+R PEL+ P+AV H KGN + A
Sbjct: 280 NKMIDSQDCIIMHIDMDCFFVSVGLRDRPELRGLPIAVTHAKGNKDGEHGSLSEIAS--- 336
Query: 1666 YRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTL 1725
R+ G+ NGMF+G ALK CPNLK VPY+FEGY EVSY LY+++AS TL
Sbjct: 337 --------CSYEARKAGVKNGMFLGEALKICPNLKPVPYNFEGYTEVSYMLYDIVASYTL 388
Query: 1726 NIEAVS 1731
+IEAVS
Sbjct: 389 DIEAVS 394
Score = 285 bits (729), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 146/305 (47%), Positives = 191/305 (62%), Gaps = 43/305 (14%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEMY DC+++L+E SLTP++FA+ +R+ I ++TGC STGFGSNKL ARLAT+K
Sbjct: 390 IEAVSCDEMYADCTKILEESSLTPMEFATIIRQEIKEKTGCPVSTGFGSNKLLARLATRK 449
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKP+GQF++ + ISD + + DLPGVG + KLN+L +TC +LQ ISL LQ E
Sbjct: 450 AKPDGQFYIQQEHISDCVSTFNVQDLPGVGWTTTHKLNNLNVRTCAELQAISLATLQKEF 509
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
G K G LY CRG D +L EH RKSVSAEVNYGIRF+NN + FLK+L EV RL
Sbjct: 510 GKKTGDILYNMCRGVDHSKLNLEHVRKSVSAEVNYGIRFENNDDAIDFLKKLCREVCNRL 569
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVR 2138
++ KG+CITLKL L+R
Sbjct: 570 NKINAKGRCITLKL-------------------------------------------LIR 586
Query: 2139 SAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQ 2198
+ EAP+E KF+GHG+CDY+T+S +L IS I KEV+ + N+++ P + RGIGIQ
Sbjct: 587 AKEAPKETEKFMGHGLCDYVTRSKNLISPISDVDIITKEVIILWNQMQKVPEDARGIGIQ 646
Query: 2199 VSKLE 2203
+SKLE
Sbjct: 647 ISKLE 651
Score = 54.7 bits (130), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 29/36 (80%)
Query: 1189 TKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
T + N +F+ EFYN SRLHH++TMG+ FK+YVN+L
Sbjct: 204 THSTKNSEFISEFYNNSRLHHIATMGATFKEYVNEL 239
>gi|340723650|ref|XP_003400202.1| PREDICTED: DNA repair protein REV1-like [Bombus terrestris]
Length = 1114
Score = 293 bits (750), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 175/426 (41%), Positives = 244/426 (57%), Gaps = 63/426 (14%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRG-GIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
GGYM AK+ KLEEQF EA+++ + IF+G+AIFVNGYT P+A+EL+
Sbjct: 19 GGYMAAKQAKLEEQFHNEADNEIKSSNIFEGIAIFVNGYTN-----------PTADELRH 67
Query: 1378 LMMLHGGIYHHYESSR-TTHIIASNLPHTKI---KKLKPGDKIIKPEWIVDSISAGKLLD 1433
LMM HGG YHHY + TTHIIASNLP++KI +K + I K EWI+DSI AG++L+
Sbjct: 68 LMMQHGGTYHHYMRPKATTHIIASNLPYSKIMLYRKSQNPIPICKTEWIMDSIKAGRILN 127
Query: 1434 HKKYLLYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSEA 1493
+KYLLY+ C+ ++ + D+T ++ +
Sbjct: 128 FQKYLLYSH----------------------CTDVQLQLKCAIQNTGNKTDDTFQTHNIQ 165
Query: 1494 VNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRL 1553
N+E + + +N +TV+ + T N + P + T + N +F+ EFYN SRL
Sbjct: 166 RNNEVNSLKISN--SRTETVEHTSIQENTFNPALPM-SSRDTHSTKNSEFISEFYNNSRL 222
Query: 1554 HHLSTMGSMFKQYVNELREKHDGVFRGI---EAIRKWKTSLGITED-----EDLEETFSD 1605
HH++TMG+ FK+YVNELR+K++G F G+ + IR ++ G + DL E +
Sbjct: 223 HHIATMGATFKEYVNELRDKNNGEFPGLIRLKDIRLNRSLFGSQLEFNIVPNDLRE---E 279
Query: 1606 NPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDI 1665
N + +IMHIDMDCFFVSVG+R PEL+ P+AV H KGN + A
Sbjct: 280 NKIIDSQDCIIMHIDMDCFFVSVGLRDRPELRGLPIAVTHAKGNKDGEHGSLSEIAS--- 336
Query: 1666 YRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTL 1725
R+ G+ NGMF+G ALK CPNLK +PY+FEGY EVSY LY+++AS TL
Sbjct: 337 --------CSYEARKAGVKNGMFLGEALKICPNLKPIPYNFEGYTEVSYMLYDIVASYTL 388
Query: 1726 NIEAVS 1731
+IEAVS
Sbjct: 389 DIEAVS 394
Score = 282 bits (721), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 154/342 (45%), Positives = 204/342 (59%), Gaps = 55/342 (16%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEMY DC+++L+E SLTP++FA+ +R+ I ++TGC STGFGSNKL ARLAT+K
Sbjct: 390 IEAVSCDEMYADCTKILEESSLTPMEFATIIRQEIKEKTGCPVSTGFGSNKLLARLATRK 449
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKP+GQF++ + I+D + + DLPGVG + KL +L +TC +LQ ISL LQ E
Sbjct: 450 AKPDGQFYIQQEHINDCVSTFNVQDLPGVGWTTTHKLKNLNVRTCAELQAISLPTLQKEF 509
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
G K G LY CRG D +L EH RKSVSAEVNYGIRF+NN + FLK+L EV RL
Sbjct: 510 GKKTGDILYNMCRGVDHSKLNLEHVRKSVSAEVNYGIRFENNDDAIDFLKKLCREVCNRL 569
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVR 2138
++ KG+CITLKL++R+ EAP+E KF+GHG+CDYIT+S +L
Sbjct: 570 NKINAKGRCITLKLLIRAKEAPKETEKFMGHGLCDYITRSKNLI---------------- 613
Query: 2139 SAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQ 2198
+P IS I KEV+ + N+++ P + RGIGIQ
Sbjct: 614 ---SP------------------------ISDVDIITKEVITLWNQMQKVPEDARGIGIQ 646
Query: 2199 VSKLEHQSKTLATIDTFFTNKGKPPDQLNNPRPGPSNSTITP 2240
+SKLE NK + LN + PS ST+ P
Sbjct: 647 ISKLE-----------ILKNKSRGTTLLNFIKNKPS-STVQP 676
Score = 55.5 bits (132), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 9/84 (10%)
Query: 1189 TKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQLISLQQDKQLPAIQVISIRSPRARP 1248
T + N +F+ EFYN SRLHH++TMG+ FK+YVN+L + + + P + IR R
Sbjct: 204 THSTKNSEFISEFYNNSRLHHIATMGATFKEYVNELRD-KNNGEFPGL----IRLKDIRL 258
Query: 1249 PRRSSTMGSM--FKQYVNELREKH 1270
R S GS F N+LRE++
Sbjct: 259 NR--SLFGSQLEFNIVPNDLREEN 280
>gi|183986198|gb|AAI66287.1| Unknown (protein for MGC:185751) [Xenopus (Silurana) tropicalis]
Length = 240
Score = 290 bits (743), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 141/227 (62%), Positives = 168/227 (74%), Gaps = 26/227 (11%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
KK+ ++SVE+IYQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + E + R++T+VP
Sbjct: 18 KKSDNKRLSVERIYQKKTQLEHILLRPDTYIGSVEPVTQQMWVFD-EDEGLNCRDVTFVP 76
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRDP M+CIKIT+N E+NT+SVWNNGKGIPVVEHK EK+FVP
Sbjct: 77 GLYKIFDEILVNAADNKQRDPTMSCIKITINPESNTVSVWNNGKGIPVVEHKVEKVFVPA 136
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IFG LLTSSNY +D++ KVTGGRNGYGAKLCNIFS
Sbjct: 137 LIFGQLLTSSNY-------------------------DDDQKKVTGGRNGYGAKLCNIFS 171
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTP 249
+KF VET+C EYKK FKQ W DNMS +IK +D+T ITF P
Sbjct: 172 NKFTVETACREYKKVFKQTWTDNMSDAADAKIKPFDGEDYTCITFQP 218
>gi|357604961|gb|EHJ64398.1| putative terminal deoxycytidyl transferase rev1 [Danaus plexippus]
Length = 694
Score = 290 bits (741), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 159/331 (48%), Positives = 201/331 (60%), Gaps = 45/331 (13%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEMYVDC++LL+ ++++ FA+ LRE I T C CSTGFG N+LQARLATKK
Sbjct: 146 IEAVSCDEMYVDCTELLKSMNVSVTDFATALREEIKSITKCPCSTGFGGNRLQARLATKK 205
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKPNGQF LT I++DFM NI LSDLPGVG+ KL SLG QTCG L ++SL LQ +
Sbjct: 206 AKPNGQFFLTADIVNDFMYNIQLSDLPGVGYQTSHKLESLGYQTCGSLLSLSLINLQQHL 265
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
G K G LY+ RG+D L+F RKSVSAEVNYGIRF+NN + + FLKQL+ EV R+
Sbjct: 266 GKKTGAQLYEQIRGQDSHPLSFHTVRKSVSAEVNYGIRFENNDQCKEFLKQLSAEVHSRM 325
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVR 2138
++ K+ GKCITLKLMVR+ AP + +KF+GHG CD I KS++L + I
Sbjct: 326 QQFKVIGKCITLKLMVRAENAPVQTAKFMGHGYCDVINKSTTLQNATNDVEI-------- 377
Query: 2139 SAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQ 2198
I KEV+ I K +DP E+RGIGIQ
Sbjct: 378 -----------------------------------ITKEVISICKKQNIDPKEMRGIGIQ 402
Query: 2199 VSKLE--HQSKTLATIDTFFTNKGKPPDQLN 2227
V+KLE + I+ F T+K P + N
Sbjct: 403 VTKLEPINIKPIKGAINKFLTSKPVPKSEKN 433
Score = 128 bits (321), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 85/150 (56%), Gaps = 35/150 (23%)
Query: 1617 MHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS-SKVREGVDRQAEFDIYRQRTMNRMG 1675
MHIDMDCFFVSVG+R+ PEL+ +PVAV H KG R G D E ++Y+QR ++G
Sbjct: 1 MHIDMDCFFVSVGLRNRPELRGKPVAVTHSKGGQPGSKRSGNDAITESNLYKQRQAKKIG 60
Query: 1676 L----------------------------------NTREYGLGNGMFVGHALKKCPNLKI 1701
+ R G+ NGMF+G ALK CP L+
Sbjct: 61 IALDIKDDIDTESAESGYEEESSYGSMSEIASCSYEARAKGIKNGMFMGKALKLCPELRT 120
Query: 1702 VPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
+PYDF+GYK+V++ LYN IA+ TL+IEAVS
Sbjct: 121 IPYDFDGYKDVAFKLYNTIANYTLDIEAVS 150
>gi|321473744|gb|EFX84711.1| hypothetical protein DAPPUDRAFT_47063 [Daphnia pulex]
Length = 359
Score = 290 bits (741), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 169/407 (41%), Positives = 230/407 (56%), Gaps = 66/407 (16%)
Query: 41 QLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQ 100
+++ ILL P YIG V+PI E MW+ + M +REI+Y PGL KIFDEI+VNA DNK
Sbjct: 1 KIKDILLLPSLYIGPVDPIKEVMWVYEEQAG-MIQREISYAPGLQKIFDEIIVNAVDNKL 59
Query: 101 RDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDK 160
RD M+ +K+ ++ N I V+ NGKGIPVVEH EKM
Sbjct: 60 RDSSMDTLKVDIDPAKNVIKVFYNGKGIPVVEHDKEKM---------------------- 97
Query: 161 VTGVVPTMIFGHLLTSSNYNDEEDKVTG-GRNGYGAKLCNIFSSKFVVETSCSEYKKSFK 219
VP+++F H LTS N N +E+ V N +GAKLCNIFS F ++T KSFK
Sbjct: 98 ---SVPSLVFCHSLTSFNCNHQEETVINEDCNCFGAKLCNIFSRTFELKTGSKVECKSFK 154
Query: 220 QVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTK 279
Q W +NM+ +PEI +DFT+ITF+ DLTKF M LDKD+ DL++RR D AAST+
Sbjct: 155 QTWTNNMTNAGTPEILPYFGEDFTEITFSVDLTKFNMAILDKDIQDLLSRRVVDVAASTR 214
Query: 280 DVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVS 339
VKV+LNG+ +P+ NF+DYV L+ + GD V YE V+ E+A+APS++GF VS
Sbjct: 215 GVKVYLNGKIIPINNFEDYVDLFL----KGGDYV---YEAVSDFCEIAVAPSEKGFMHVS 267
Query: 340 FVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAK 399
VN +TTKGG+HV V + +V+++ + +K+ NK G
Sbjct: 268 QVNKYSTTKGGKHVHHVTERVVQKLQKYLKETNKRNG----------------------- 304
Query: 400 TLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ 446
D+ V +K H+ +F+NC I N F+ K MT Q
Sbjct: 305 --FDVDVEFN-------MIKMHLMVFVNCSISNMCFNEPLKNKMTNQ 342
>gi|195376647|ref|XP_002047104.1| GJ12111 [Drosophila virilis]
gi|194154262|gb|EDW69446.1| GJ12111 [Drosophila virilis]
Length = 1066
Score = 288 bits (738), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 177/464 (38%), Positives = 252/464 (54%), Gaps = 82/464 (17%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKAL 1378
GGY EAKK KLEEQF ++ + +F G++IFVNG T PSA+ELK +
Sbjct: 13 GGYFEAKKAKLEEQFAAASDPFRKSNLFDGISIFVNGLTN-----------PSADELKRI 61
Query: 1379 MMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYL 1438
MM+HGG +HHYE S T IIASNLP K++K+ +II +W+VD + +++D+K YL
Sbjct: 62 MMVHGGTFHHYERSHTNFIIASNLPDVKVRKMDTS-RIISAQWVVDCVQQMRIVDYKPYL 120
Query: 1439 LYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSEAVNSEE 1498
LYT + T P + + ++ STVS+ T ES + E
Sbjct: 121 LYTN---------------QKTTQP--RLNFGKAKNNDSTVSEG-SGTLESALGGILKEL 162
Query: 1499 SKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLST 1558
++ A +P K S T + ++S + A + FL EFY SRLHH++T
Sbjct: 163 QQAVATSP--------DKNSSTVTNVFNTTTSTSNSARTAVDPAFLSEFYKNSRLHHIAT 214
Query: 1559 MGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMH 1618
+GS FKQYV ELR+ H + + ++ LG + ++ S + P+ +MH
Sbjct: 215 LGSGFKQYVCELRQAHGN--KSFVKRTELRSQLGCKQPDN---------SITTPKRYVMH 263
Query: 1619 IDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSK----VREGVDRQAEFDIYRQRTMN-- 1672
IDMDCFFVSVG+R HPE++ P+AV H KG S+ V DRQ E +++ QR +
Sbjct: 264 IDMDCFFVSVGLRKHPEMRGLPLAVTHSKGGSAATDVPVHPQADRQVEQELFAQRFEHQK 323
Query: 1673 ---------------RMGLN--------TREYGLGNGMFVGHALKKCPNLKIVPYDFEGY 1709
+M L+ RE G+ NGMFVG ALK CP+LK +PYDFEGY
Sbjct: 324 HDNIRADKVRYGFEKKMSLSEIASCSYEAREKGIKNGMFVGQALKLCPDLKTIPYDFEGY 383
Query: 1710 KEVSYCLYNLIASLTLNIEAVSLYTNESF--LNALPEDIRQEVL 1751
+EV++ LY+ +A TLNIEAVS +E F L L +D++ +V+
Sbjct: 384 REVAFALYDTVAQYTLNIEAVS--CDEMFVDLTDLLQDLQVDVM 425
Score = 254 bits (650), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 132/255 (51%), Positives = 172/255 (67%), Gaps = 2/255 (0%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEM+VD + LLQ+L + + F ++LR+ + +TGC CS G G NKL AR+ATK
Sbjct: 401 IEAVSCDEMFVDLTDLLQDLQVDVMTFVTHLRQEVRDKTGCPCSAGVGENKLLARMATKL 460
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKPNGQ L + +M + L LPGVG S+ +KLN G TC D+Q +SL RL+ +
Sbjct: 461 AKPNGQHLLDTDDAAKYMASFALDILPGVGSSMTYKLNQAGLITCADVQLVSLVRLEMLL 520
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
G K TLY++CRG D + L +E QRKSVSAEVNYGIRF N+E+E FL+QL+ EV RL
Sbjct: 521 GKKMAQTLYQNCRGIDPRPLVYEQQRKSVSAEVNYGIRFTKNEELEKFLQQLSIEVHSRL 580
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL--PIYERPLIITYFLLL 2136
E+K K K ITLKLMVR+AEAP E SKF+GHGVCD TKSS L + +I+T L L
Sbjct: 581 IEIKRKTKLITLKLMVRAAEAPVETSKFMGHGVCDNQTKSSLLKQSTDDVEVIMTNVLKL 640
Query: 2137 VRSAEAPREASKFLG 2151
++ + P + +G
Sbjct: 641 MKESGFPPHELRGIG 655
Score = 50.4 bits (119), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 1186 ASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
++S + A + FL EFY SRLHH++T+GS FKQYV +L
Sbjct: 188 SNSARTAVDPAFLSEFYKNSRLHHIATLGSGFKQYVCEL 226
>gi|401418313|ref|XP_003873648.1| mitochondrial DNA topoisomerase II [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322489879|emb|CBZ25140.1| mitochondrial DNA topoisomerase II [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 1236
Score = 288 bits (737), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 211/634 (33%), Positives = 313/634 (49%), Gaps = 84/634 (13%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y+K + ++H+LLRP+ Y+GS+E +M++ + E M + GL KI DEIL+NA
Sbjct: 7 YKKLTPIDHVLLRPEMYVGSIETQPTSMYIFDPEKGKMVWETMRVNQGLLKIVDEILLNA 66
Query: 96 CDN---KQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSS 152
DN + + I I ++ +T I+V N+G G+P+V ++ KM++P M+F
Sbjct: 67 ADNITNSKGSVRQTYISINIS-DTGEITVENDGAGLPIVRSREHKMYIPEMVF------- 118
Query: 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCS 212
GHLLTSSNYN++ T GR+GYGAKL NI S+KF V C
Sbjct: 119 ------------------GHLLTSSNYNNDSTSTTAGRHGYGAKLTNILSTKFSV--VCR 158
Query: 213 EYKKSFKQVWKDNMSKVTSPEIK--SGSKDDFTKITFTPDLTKFKM--TSLDKDMVDLIT 268
+ F W D+M T+P + + + T++ F PD F S+ DM ++
Sbjct: 159 TDGREFHMSWTDHMRMATAPRVNRVDPKEKNVTRVKFMPDYAHFGFPSASISLDMKRVLH 218
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVA 327
+R D AA ++V LN ++F DY +LY+ D P +Y + N VA
Sbjct: 219 KRIMDLAAMFSKIEVRLNNVPFGFRSFTDYARLYSLSGLDGSMPPEPFVYTSSNG--SVA 276
Query: 328 IAP--SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
P + + VS VN + T GG H +A +D I+ ++ + K K G
Sbjct: 277 YVPQLTQSPKRIVSVVNGVVTYNGGTHCNAAMD-ILDSCLDSLSKNFKKNGKV------- 328
Query: 386 KFNNVKNNKLQMAKTLIDIGV------------RLGGMALKPFQVKNHIWIFINCL---- 429
V N++Q T++ V RL P KN + ++ +
Sbjct: 329 ----VDTNRVQRHFTVLVFLVQAQPKFDSQSKARLVSTVTMPRVPKNTLEKYLERMPFLE 384
Query: 430 -IVNPTFDSQTKE-NMTLQKGSFGS-----TCVPKLEDANDAGTKNSIDCTLILTEGDSA 482
VN D T E N + G S + + KL DA + + TLI+TEGDSA
Sbjct: 385 AHVNSMDDQLTNELNKEIGAGRRLSSKTLISSITKLVDATSSRSDGRNIRTLIITEGDSA 444
Query: 483 KSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTV 542
K+LA++ L + GVFPLRGKLLNVR K++ E+ +L LGL+ K+Y T+
Sbjct: 445 KALALNSLSSEQKKYCGVFPLRGKLLNVRNKNLKRLKTCKELQDLFLSLGLELGKEYRTL 504
Query: 543 EDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR--LPFLEEFITPIIKAT-- 598
+ LRY RL++MTDQD DGSHIKGL+IN WP LL+ ++ F TPI+K
Sbjct: 505 AE---LRYQRLLVMTDQDADGSHIKGLVINAFESLWPKLLQNNPGYISLFSTPIVKIKVN 561
Query: 599 -KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
K++E ++F+S +F W+ + Y KYYK
Sbjct: 562 GKSKEVIAFHSFRDFHRWQRAHPSAR-YTAKYYK 594
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 7/102 (6%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLP----MKPW 715
+EP Y+PI+PM+L NGA GIG G+ T IP +P ++ ++ MI GE + PW
Sbjct: 806 VEPHHYVPILPMLLCNGAVGIGFGFATTIPAFHPLDVSAAVRAMINGESAKQVMRNLVPW 865
Query: 716 YKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTT 757
F+G + D+ F+ G+ + + I+E+ W T
Sbjct: 866 AVGFQGTVRRGPDNEFIAVGKYTAHPNGRFHISEI---PWMT 904
>gi|154334646|ref|XP_001563570.1| mitochondrial DNA topoisomerase II [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134060591|emb|CAM42140.1| mitochondrial DNA topoisomerase II [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 1239
Score = 286 bits (731), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 207/633 (32%), Positives = 311/633 (49%), Gaps = 82/633 (12%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y+K S ++H+LLRP+ Y+GS+E M++ + E M + GL KI DEIL+NA
Sbjct: 7 YKKLSPIDHVLLRPEMYVGSIETQPTPMYIFDPEKGKMVWETMRVNQGLLKIVDEILLNA 66
Query: 96 CDN---KQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSS 152
DN + + I I+++ +T I+V N+G G+P+V ++ K+++P M+F
Sbjct: 67 ADNINNSKGSVRQTYISISIS-DTGEITVENDGAGLPIVRSREHKIYIPEMVF------- 118
Query: 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCS 212
GHLLTSSNYN++ T GR+GYGAKL NI S+KF V C
Sbjct: 119 ------------------GHLLTSSNYNNDSTSTTAGRHGYGAKLTNILSTKFSV--ICR 158
Query: 213 EYKKSFKQVWKDNMSKVTSPEIK--SGSKDDFTKITFTPDLTKFKM--TSLDKDMVDLIT 268
+ F W D+M T+P + + + T++ F PD F S+ DM ++
Sbjct: 159 TAGREFHMSWTDHMRMATAPRVSRVDPKEKNVTRVKFMPDYAHFGFPNASISLDMKRVLH 218
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAI 328
+R D AA ++V LN + F DY +LY+ P + + + +P VA
Sbjct: 219 KRIMDLAAMFSKIEVRLNNVPFGFETFTDYARLYSLPGPNGSTPPE-PFVHTSPNGSVAY 277
Query: 329 AP--SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNK 386
P + + V VN + T GG H +A +D I+ ++ + + K G
Sbjct: 278 VPQLTQSPKRIVGVVNGVVTYNGGTHCNAAID-ILDSCLDSLSRNFKKEGKV-------- 328
Query: 387 FNNVKNNKLQMAKTLIDIGV------------RLGGMALKPFQVKNHIWIFINCL----- 429
V N++Q T++ + RL P KN + ++ +
Sbjct: 329 ---VDTNRVQRHFTVLVFLIQAQPKFDSQSKARLVSTVTMPRVPKNTLEKYLETMPFLEA 385
Query: 430 IVNPTFDSQTKE-NMTLQKGSFGS-----TCVPKLEDANDAGTKNSIDCTLILTEGDSAK 483
VN D E N + G S + + KL DA + TLI+TEGDSAK
Sbjct: 386 HVNSMDDQLANELNKEIGAGRRLSSKTLISSITKLVDATSSRPDGRNIRTLIITEGDSAK 445
Query: 484 SLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVE 543
+LA++ L + GVFPLRGKLLNVR K++ E+ +L LGL+ K+Y T +
Sbjct: 446 ALALNSLSSDQKKYCGVFPLRGKLLNVRNKNLKRLKMCKELQDLFLALGLELGKEYRTPD 505
Query: 544 DMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR--LPFLEEFITPIIK---AT 598
+ LRY RL++MTDQD DGSHIKGL+IN WPTLL+ ++ F TPI+K +
Sbjct: 506 E---LRYQRLLVMTDQDADGSHIKGLVINAFESLWPTLLQNNPGYISLFSTPIVKIKVSG 562
Query: 599 KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
K++E ++F+SL +F W+ Y KYYK
Sbjct: 563 KSKEVIAFHSLRDFHRWQRAHPTAR-YTAKYYK 594
Score = 69.3 bits (168), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLP----MKPW 715
+EP Y+PI+PM+L NGA GIG G+ T IP +P ++ ++ MI GE + PW
Sbjct: 806 VEPHHYVPILPMLLCNGAVGIGFGFATTIPPFHPLDVSAAVRAMINGESAKQVVRNLVPW 865
Query: 716 YKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTT 757
F+G + D F+ G+ + + I+E+ W T
Sbjct: 866 AVGFQGTVRRGPDDEFIAVGKYTAHPNGRFHISEI---PWMT 904
>gi|19923006|ref|NP_612047.1| Rev1 [Drosophila melanogaster]
gi|7291986|gb|AAF47401.1| Rev1 [Drosophila melanogaster]
gi|10440508|dbj|BAB15801.1| dREV1 [Drosophila melanogaster]
Length = 995
Score = 285 bits (730), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 192/517 (37%), Positives = 270/517 (52%), Gaps = 74/517 (14%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKAL 1378
GGY EAKK KLEEQF ++ + +FQG++IFVNG T PSA+ELK +
Sbjct: 13 GGYFEAKKSKLEEQFAAASDPFRKSDLFQGISIFVNGRTD-----------PSADELKRI 61
Query: 1379 MMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYL 1438
MM+HGG +HHYE S TT+IIAS LP K++ + K I +W+VD + K++D+K YL
Sbjct: 62 MMVHGGTFHHYERSHTTYIIASVLPDVKVRNMNLS-KFISAKWVVDCLEKKKIVDYKPYL 120
Query: 1439 LYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSEAVNSEE 1498
LYT + K SKS VE + V VD+T++ +
Sbjct: 121 LYTNQKTSQPMLIFGKPKDNGANE---SKSDVEPPKDKAEVE--VDSTKDETQMELGGIL 175
Query: 1499 SKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLST 1558
+ A ++ ESK+ N+S +++ + A++ +FL EFY SRLHH++T
Sbjct: 176 KNLQQAVATSPEKEASASESKI--TNLSTTSNNSTTARTAADPNFLSEFYKNSRLHHIAT 233
Query: 1559 MGSMFKQYVNELREKHDGVFRGIEAIRKWKT--SLGITEDEDLEETFSDNPSPSEPEPVI 1616
+G+ FKQYV LR+KH G + K +T SL + LE +
Sbjct: 234 LGAGFKQYVCRLRQKH-----GTQGFPKRETLKSLANSHHNCLER-------------YV 275
Query: 1617 MHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSK----VREGVDRQAEFDIYRQRTMN 1672
MHIDMDCFFVSVG+R PEL+ P+AV H KG ++ V DR+AE +++ QR +
Sbjct: 276 MHIDMDCFFVSVGLRTRPELRGLPIAVTHSKGGNAATDVPVHPQADRKAELELFAQRFEH 335
Query: 1673 -----------RMGLN--------------TREYGLGNGMFVGHALKKCPNLKIVPYDFE 1707
R G + RE G+ NGMFVG ALK CP LK +PYDFE
Sbjct: 336 HFHDGDKAEKVRSGFDKKMSLSEIASCSYEAREKGIRNGMFVGQALKLCPELKTIPYDFE 395
Query: 1708 GYKEVSYCLYNLIASLTLNIEAVSLYTNESF--LNALPEDIRQEVLDDLSR-QQSVLSRE 1764
GYKEV++ LY+ +A TLNIEAVS +E F L L ++ +V+ +S +Q V S+
Sbjct: 396 GYKEVAFTLYDTVAQYTLNIEAVS--CDEMFVELTDLAHELNVDVMAFVSHLRQEVYSKT 453
Query: 1765 QN-TTEPLAQDIICADSHTLVRTPSPSPILDMSTSIL 1800
+ +A + + A T P+ +LD S IL
Sbjct: 454 GCPCSAGVAGNKLLARMATKEAKPNGQFLLDSSNDIL 490
Score = 239 bits (610), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 122/256 (47%), Positives = 171/256 (66%), Gaps = 3/256 (1%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEM+V+ + L EL++ + F S+LR+ + +TGC CS G NKL AR+ATK+
Sbjct: 415 IEAVSCDEMFVELTDLAHELNVDVMAFVSHLRQEVYSKTGCPCSAGVAGNKLLARMATKE 474
Query: 1959 AKPNGQFHL-TPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNE 2017
AKPNGQF L + I +M + L LPGVG S+ KL G CGD+QN +L++++
Sbjct: 475 AKPNGQFLLDSSNDILAYMAPMSLDLLPGVGSSISHKLKQAGLNNCGDVQNTTLEKMEKV 534
Query: 2018 VGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKR 2077
+G K G L+++CRG DD+ L +E RK+VSAE+N+GIRF N+ E E FL QL+ EV KR
Sbjct: 535 LGKKLGQNLFQNCRGIDDRPLAYEQIRKTVSAEMNFGIRFTNSVECEQFLCQLSEEVTKR 594
Query: 2078 LEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIY--ERPLIITYFLL 2135
L E++ K + I LK+MVR+AEAP E SK++GHGVCD I KSS + + +I T L
Sbjct: 595 LVEIRRKARSINLKIMVRAAEAPVETSKYMGHGVCDIINKSSLIKYATDDVNVITTVVLD 654
Query: 2136 LVRSAEAPREASKFLG 2151
L++ A+ P + + LG
Sbjct: 655 LMKDADIPPDELRGLG 670
Score = 53.5 bits (127), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 1124 ESNLRPSADKAE-----SRKRTQTSQGTESEERKGHLRRWRRKEEESTQTVQVELREGVN 1178
+S++ P DKAE ++ TQ G + + + KE ++++ + N
Sbjct: 146 KSDVEPPKDKAEVEVDSTKDETQMELGGILKNLQQAVATSPEKEASASES------KITN 199
Query: 1179 ISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
+S +++ + A++ +FL EFY SRLHH++T+G+ FKQYV +L
Sbjct: 200 LSTTSNNSTTARTAADPNFLSEFYKNSRLHHIATLGAGFKQYVCRL 245
>gi|321464200|gb|EFX75209.1| hypothetical protein DAPPUDRAFT_323396 [Daphnia pulex]
Length = 451
Score = 285 bits (730), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 163/436 (37%), Positives = 244/436 (55%), Gaps = 70/436 (16%)
Query: 35 IYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVN 94
I ++ S++E +L P++ + S EPI + MW+ E + + +R++TYVPGLY+IFDE+LVN
Sbjct: 69 IAKRTSKVEKMLSEPNSSMQSREPIEDVMWVY--EDDCIFQRQVTYVPGLYQIFDELLVN 126
Query: 95 ACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
A DNK +D M+ I++ ++ ++N I ++ NG+GIPVVE ++ KM+VP++IF
Sbjct: 127 AADNKIKDMSMDTIRVDIDLKSNIIKIFYNGEGIPVVEKEEAKMYVPSLIFCS------- 179
Query: 155 NDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEY 214
L S N DEE++VTG RN +GAKL N+FS+ FV+E + E
Sbjct: 180 ------------------LQPSFNICDEEEEVTGHRNCFGAKLANMFSTSFVLEIASKEQ 221
Query: 215 KKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
+ FKQ W+ NM+K PEI S FT+ITF+ D+ KFKM +LD+D++ + +RRA +
Sbjct: 222 GQRFKQEWRTNMTKDKIPEILPYSGSSFTEITFSLDMEKFKMDALDRDILAVFSRRAVEM 281
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKL-YTDRQDEDGDPVKIIYENVNPRWEVAIAPSDR 333
AA T+ VKVFLNG LP+ NF DYV L +D G ++ + E ++ WE+A+A S+R
Sbjct: 282 AACTRGVKVFLNGNLLPISNFTDYVNLCLRGEKDCFGRQLECVSEVISDSWEIAVASSNR 341
Query: 334 GFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNN 393
FQQ+SF N ATT+GGRHV + + +++ ++K+K
Sbjct: 342 -FQQMSFANKYATTEGGRHVFHISNHVIEHFRRMLKEK---------------------- 378
Query: 394 KLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGST 453
+G LG V+ HIW+F+NC + N TF S K + + S
Sbjct: 379 ----------VGTSLG-----KHTVRKHIWVFVNCSLKNSTFKSPAKAKL-MDASLEMSM 422
Query: 454 CVPK---LEDANDAGT 466
C P ND G
Sbjct: 423 CTPSRAFFTKLNDCGV 438
>gi|321453493|gb|EFX64722.1| hypothetical protein DAPPUDRAFT_333898 [Daphnia pulex]
Length = 407
Score = 285 bits (730), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 159/430 (36%), Positives = 237/430 (55%), Gaps = 62/430 (14%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYK 86
N+++ + KK +L +L P YIG W+ + M +REI Y PGL+K
Sbjct: 13 VNELADNEKVMKKMRLRDMLSIPSLYIGPTISFKNVKWVYEGDVG-MIQREIMYTPGLWK 71
Query: 87 IFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFG 146
IFDEIL+NA NK RDP+M+ +KI ++ N I+ + NGKGIP+V+H+++K F+P+MIF
Sbjct: 72 IFDEILINAVKNKDRDPEMDTLKIDIDPIKNVITFYYNGKGIPIVKHEEQKTFIPSMIFD 131
Query: 147 HLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFV 206
LL S N DEE+ VTGG N YG KL NIFS+ F
Sbjct: 132 P-------------------------LLPSFNCTDEEETVTGGLNCYGIKLANIFSTAFE 166
Query: 207 VETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDL 266
+ET+ ++ FKQ W DNM+ P ++ S ++TKIT++PD KF+M L++D + L
Sbjct: 167 LETASTDLCLRFKQTWTDNMTIAGIPVVEPYSGPNYTKITYSPDFDKFQMDLLNRDTIAL 226
Query: 267 ITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKL-YTDRQDEDGDPVKIIYENVNPRWE 325
++RR + AAST V V+LN + LP+ NF++YV L + D G +K ++E VN RWE
Sbjct: 227 LSRRVVEVAASTPGVNVYLNDKPLPINNFKEYVDLCLKGKVDRLGAQLKCVFEAVNERWE 286
Query: 326 VAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
+A+ S+ GFQQ+S N TTKGG HV+ + + + + + E +K++NK
Sbjct: 287 IAVVASEHGFQQISLANKFCTTKGGLHVEYITERVTRYLFENLKRRNKR----------- 335
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTL 445
KT G+ + P ++ HI +F+NC IV+P F +KE +
Sbjct: 336 ------------DKT---------GIHVHPQTIRKHIMVFVNCSIVSPIFKDLSKERL-- 372
Query: 446 QKGSFGSTCV 455
+G+F T V
Sbjct: 373 -QGNFLYTSV 381
>gi|195126228|ref|XP_002007576.1| GI13018 [Drosophila mojavensis]
gi|193919185|gb|EDW18052.1| GI13018 [Drosophila mojavensis]
Length = 1061
Score = 285 bits (729), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 178/470 (37%), Positives = 249/470 (52%), Gaps = 90/470 (19%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKAL 1378
GGY EAKK KLEEQF + + +F G++IFVNG + PSA+ELK +
Sbjct: 13 GGYFEAKKAKLEEQFAAASVPFRKSNLFNGISIFVNGK-----------VNPSADELKRI 61
Query: 1379 MMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYL 1438
MM++GG +H YE T+ +IASNLP K++K+ ++II+ +W+VD + ++LD+K YL
Sbjct: 62 MMVYGGTFHTYEKPETSFVIASNLPDVKVRKMDT-NRIIRAQWVVDCVEQMRILDYKPYL 120
Query: 1439 LYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSEAVNSEE 1498
LYT + T PC + N + + SE S E
Sbjct: 121 LYTN---------------QKTTQPCLNFG-------------KGKNNDSNMSEEAGSSE 152
Query: 1499 SKSEAANPIESKQTVKT----KESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLH 1554
+ + P E +Q V + S + ++S + A + FLGEFY SRLH
Sbjct: 153 N-ALGGIPKELQQPVSVTSPDENSITTANVSTTTNTTSNSARTAVDPSFLGEFYKNSRLH 211
Query: 1555 HLSTMGSMFKQYVNELREKH-DGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPE 1613
H++T+GS FKQY+ ELR+ H + F + +RK L E P P P+
Sbjct: 212 HIATLGSGFKQYICELRQAHGNKSFAKRDELRK-----------QLSEKQPIIPQPKTPK 260
Query: 1614 PVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSK----VREGVDRQAEFDIYRQR 1669
+MHIDMDCFFVSVG+R HPEL+ +P+AV H KG S+ V DR+ E D++ QR
Sbjct: 261 RYVMHIDMDCFFVSVGLRKHPELRGQPIAVTHSKGGSAATDVPVHPQADRKVEQDLFAQR 320
Query: 1670 TMNR-----------------MGLN--------TREYGLGNGMFVGHALKKCPNLKIVPY 1704
+R M L+ RE G+ NGMFVG ALK CP+LK +PY
Sbjct: 321 FEHRQHDSVRADKVRYGFDKKMSLSEIASCSYEAREKGIKNGMFVGQALKLCPDLKTIPY 380
Query: 1705 DFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDL 1754
DFEGY+EV++ LYN +A TLNIEAVS +E F++ D+ QE+ D+
Sbjct: 381 DFEGYREVAFALYNTVAQYTLNIEAVS--CDEMFVDL--TDLLQELQVDV 426
Score = 258 bits (658), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 141/310 (45%), Positives = 186/310 (60%), Gaps = 43/310 (13%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEM+VD + LLQEL + + F ++LR+ + + TGC CS G G NKL AR+ATK
Sbjct: 403 IEAVSCDEMFVDLTDLLQELQVDVMTFVTHLRQEVRQITGCPCSAGVGENKLLARMATKL 462
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKPNG+ L + +M N L LPGVG S+ +KLN G +TCGD+Q SL RL+ +
Sbjct: 463 AKPNGEHLLDTDDAAKYMANFTLDTLPGVGSSMTYKLNQAGFKTCGDVQLASLARLETLL 522
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
G K LTL+++C G D + L +E QRKSVSAEVNYGIRF +E+E FL+QL+ EV RL
Sbjct: 523 GKKMALTLHQNCHGIDLRPLVYEQQRKSVSAEVNYGIRFTKYEELEKFLQQLSVEVHNRL 582
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVR 2138
E+K K K ITLKLMVR+AEAP E SKF+GHGVCD TKSS L
Sbjct: 583 IEIKRKAKSITLKLMVRAAEAPVETSKFMGHGVCDIQTKSSLL----------------- 625
Query: 2139 SAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQ 2198
+E++ + I VL ++ + + P ELRGIGI
Sbjct: 626 -----KEST---------------------NDVEVITSHVLKLMKESGIPPQELRGIGIH 659
Query: 2199 VSKLEHQSKT 2208
+++LE ++T
Sbjct: 660 LNRLEDVTET 669
Score = 50.4 bits (119), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 1190 KNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
+ A + FLGEFY SRLHH++T+GS FKQY+ +L
Sbjct: 193 RTAVDPSFLGEFYKNSRLHHIATLGSGFKQYICEL 227
>gi|162951725|gb|ABY21724.1| GH11153p [Drosophila melanogaster]
Length = 1012
Score = 285 bits (729), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 192/517 (37%), Positives = 270/517 (52%), Gaps = 74/517 (14%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKAL 1378
GGY EAKK KLEEQF ++ + +FQG++IFVNG T PSA+ELK +
Sbjct: 30 GGYFEAKKSKLEEQFAAASDPFRKSDLFQGISIFVNGRTD-----------PSADELKRI 78
Query: 1379 MMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYL 1438
MM+HGG +HHYE S TT+IIAS LP K++ + K I +W+VD + K++D+K YL
Sbjct: 79 MMVHGGTFHHYERSHTTYIIASVLPDVKVRNMNLS-KFISAKWVVDCLEKKKIVDYKPYL 137
Query: 1439 LYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSEAVNSEE 1498
LYT + K SKS VE + V VD+T++ +
Sbjct: 138 LYTNQKTSQPMLIFGKPKDNGANE---SKSDVEPPKDKAEVE--VDSTKDETQMELGGIL 192
Query: 1499 SKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLST 1558
+ A ++ ESK+ N+S +++ + A++ +FL EFY SRLHH++T
Sbjct: 193 KNLQQAVATSPEKEASASESKI--TNLSTTSNNSTTARTAADPNFLSEFYKNSRLHHIAT 250
Query: 1559 MGSMFKQYVNELREKHDGVFRGIEAIRKWKT--SLGITEDEDLEETFSDNPSPSEPEPVI 1616
+G+ FKQYV LR+KH G + K +T SL + LE +
Sbjct: 251 LGAGFKQYVCRLRQKH-----GTQGFPKRETLKSLANSHHNCLER-------------YV 292
Query: 1617 MHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSK----VREGVDRQAEFDIYRQRTMN 1672
MHIDMDCFFVSVG+R PEL+ P+AV H KG ++ V DR+AE +++ QR +
Sbjct: 293 MHIDMDCFFVSVGLRTRPELRGLPIAVTHSKGGNAATDVPVHPQADRKAELELFAQRFEH 352
Query: 1673 -----------RMGLN--------------TREYGLGNGMFVGHALKKCPNLKIVPYDFE 1707
R G + RE G+ NGMFVG ALK CP LK +PYDFE
Sbjct: 353 HFHDGDKAEKVRSGFDKKMSLSEIASCSYEAREKGIRNGMFVGQALKLCPELKTIPYDFE 412
Query: 1708 GYKEVSYCLYNLIASLTLNIEAVSLYTNESF--LNALPEDIRQEVLDDLSR-QQSVLSRE 1764
GYKEV++ LY+ +A TLNIEAVS +E F L L ++ +V+ +S +Q V S+
Sbjct: 413 GYKEVAFTLYDTVAQYTLNIEAVS--CDEMFVELTDLAHELNVDVMAFVSHLRQEVYSKT 470
Query: 1765 QN-TTEPLAQDIICADSHTLVRTPSPSPILDMSTSIL 1800
+ +A + + A T P+ +LD S IL
Sbjct: 471 GCPCSAGVAGNKLLARMATKEAKPNGQFLLDSSNDIL 507
Score = 239 bits (609), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 122/256 (47%), Positives = 171/256 (66%), Gaps = 3/256 (1%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEM+V+ + L EL++ + F S+LR+ + +TGC CS G NKL AR+ATK+
Sbjct: 432 IEAVSCDEMFVELTDLAHELNVDVMAFVSHLRQEVYSKTGCPCSAGVAGNKLLARMATKE 491
Query: 1959 AKPNGQFHL-TPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNE 2017
AKPNGQF L + I +M + L LPGVG S+ KL G CGD+QN +L++++
Sbjct: 492 AKPNGQFLLDSSNDILAYMAPMSLDLLPGVGSSISHKLKQAGLNNCGDVQNTTLEKMEKV 551
Query: 2018 VGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKR 2077
+G K G L+++CRG DD+ L +E RK+VSAE+N+GIRF N+ E E FL QL+ EV KR
Sbjct: 552 LGKKLGQNLFQNCRGIDDRPLAYEQIRKTVSAEMNFGIRFTNSVECEQFLCQLSEEVTKR 611
Query: 2078 LEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIY--ERPLIITYFLL 2135
L E++ K + I LK+MVR+AEAP E SK++GHGVCD I KSS + + +I T L
Sbjct: 612 LVEIRRKARSINLKIMVRAAEAPVETSKYMGHGVCDIINKSSLIKYATDDVNVITTVVLD 671
Query: 2136 LVRSAEAPREASKFLG 2151
L++ A+ P + + LG
Sbjct: 672 LMKDADIPPDELRGLG 687
Score = 53.1 bits (126), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 1124 ESNLRPSADKAE-----SRKRTQTSQGTESEERKGHLRRWRRKEEESTQTVQVELREGVN 1178
+S++ P DKAE ++ TQ G + + + KE ++++ + N
Sbjct: 163 KSDVEPPKDKAEVEVDSTKDETQMELGGILKNLQQAVATSPEKEASASES------KITN 216
Query: 1179 ISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
+S +++ + A++ +FL EFY SRLHH++T+G+ FKQYV +L
Sbjct: 217 LSTTSNNSTTARTAADPNFLSEFYKNSRLHHIATLGAGFKQYVCRL 262
>gi|195012655|ref|XP_001983719.1| GH15415 [Drosophila grimshawi]
gi|193897201|gb|EDV96067.1| GH15415 [Drosophila grimshawi]
Length = 948
Score = 285 bits (729), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 187/534 (35%), Positives = 269/534 (50%), Gaps = 90/534 (16%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKAL 1378
GGY EAKK KLEEQF +N + +F G++IFVNG T P+A+ELK +
Sbjct: 13 GGYFEAKKSKLEEQFAAASNPFRKSNLFDGISIFVNGLTN-----------PTADELKRI 61
Query: 1379 MMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYL 1438
MM+HGG +HHYE S T IIASNLP K++K+ +II +W+VD + ++LD+K YL
Sbjct: 62 MMVHGGTFHHYERSHTKFIIASNLPDVKVRKMDTS-RIIAAQWVVDCVEQNRVLDYKPYL 120
Query: 1439 LYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSEAVNSEE 1498
LYT + T P + + + ST+ +S EE++ + + E
Sbjct: 121 LYTN---------------QKTTQP--RLNFGKGKKNDSTLDNST-VAEETELDGILKEL 162
Query: 1499 SKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLST 1558
+ A +P + + + L S + S + A + +FL EFY SRLHH++T
Sbjct: 163 QQDVATSPKKHISHI----NNLSATTTSNHPNSSHSARTAVDPEFLNEFYKNSRLHHIAT 218
Query: 1559 MGSMFKQYVNELREKHDG---VFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPV 1615
+G+ FKQYV ELR+ H V RG + +T L + S++ S P+
Sbjct: 219 LGAGFKQYVCELRQAHGNKPFVKRG-----ELRTLLVAGK------LLSEDVSTKTPKRY 267
Query: 1616 IMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSK----VREGVDRQAEFDIYRQRTM 1671
+MHIDMDCFFVSVG+R HP+L+ P+AV H KG + V +RQ E +++ QR
Sbjct: 268 VMHIDMDCFFVSVGLRSHPDLRGLPIAVTHSKGGTGATDVPVHPQANRQVERELFAQRFE 327
Query: 1672 NRMGLNTRE-------------------------YGLGNGMFVGHALKKCPNLKIVPYDF 1706
+ N R G+ NGMFVG ALK CP LK +PYDF
Sbjct: 328 QHLHDNVRADKVRYGFQKNMSLSEIASCSYEARAKGIRNGMFVGQALKLCPELKTIPYDF 387
Query: 1707 EGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQN 1766
EGY+EV++ LYN +A TLNIEAVS +E F++ D+ QE+ D+ + L +E
Sbjct: 388 EGYREVAFALYNTVAQYTLNIEAVS--CDEMFVDL--TDVLQELQVDVMTFVTHLRQEVR 443
Query: 1767 TTEPLAQDIICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTM 1820
AD+ L R M+T + H+L + + M T+
Sbjct: 444 DITACPCSAGVADNKLLAR---------MATKLAKPNGQHLLQTEDAANYMATL 488
Score = 254 bits (648), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 144/329 (43%), Positives = 194/329 (58%), Gaps = 47/329 (14%)
Query: 1875 EAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIA 1934
E Y+E V A+ + + + + AVSCDEM+VD + +LQEL + + F ++LR+ +
Sbjct: 388 EGYRE----VAFALYNTVAQYTLNIEAVSCDEMFVDLTDVLQELQVDVMTFVTHLRQEVR 443
Query: 1935 KETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFK 1994
T C CS G NKL AR+ATK AKPNGQ L + +++M + L LPGVG S+ +K
Sbjct: 444 DITACPCSAGVADNKLLARMATKLAKPNGQHLLQTEDAANYMATLALDVLPGVGSSITYK 503
Query: 1995 LNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYG 2054
LN G C D+Q +SL RL+ +G K TLY++CRG D + L +E QRKS+SAEVNYG
Sbjct: 504 LNQAGLSNCADVQQVSLVRLEMLLGKKMAQTLYQNCRGIDPRPLVYEQQRKSISAEVNYG 563
Query: 2055 IRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDY 2114
IRF +E+E FLKQL+GEV RL E+K K K ITLKLMVR+AEAP E SKF+GHG+CD
Sbjct: 564 IRFSKYEELEKFLKQLSGEVHSRLIEIKRKAKSITLKLMVRAAEAPVETSKFMGHGICDN 623
Query: 2115 ITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQI 2174
TKS LLL +S + ++IT++
Sbjct: 624 QTKS---------------LLLKQSTDD------------LEFITQN------------- 643
Query: 2175 LKEVLFIVNKLKVDPVELRGIGIQVSKLE 2203
VL ++ + P ELRGIGI +SKL+
Sbjct: 644 ---VLKLMKESGFPPNELRGIGIHLSKLD 669
Score = 49.3 bits (116), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 28/37 (75%)
Query: 1188 STKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
S + A + +FL EFY SRLHH++T+G+ FKQYV +L
Sbjct: 194 SARTAVDPEFLNEFYKNSRLHHIATLGAGFKQYVCEL 230
>gi|37731960|gb|AAO23340.1| type II topoisomerase [Strigomonas culicis]
Length = 1230
Score = 284 bits (726), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 211/656 (32%), Positives = 307/656 (46%), Gaps = 128/656 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEI---L 92
Y+K S ++H+LLRP+ Y+GS+E +M++ + M + GL KI DEI L
Sbjct: 7 YKKLSPIDHVLLRPEMYVGSIETQPVSMFVFDPVKACMAWESMQVNHGLLKIVDEIPAQL 66
Query: 93 VNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSS 152
V+ +N + KM IKIT++ + I++ N+G GIP+V++K+ K+++P M+F
Sbjct: 67 VDNINNAKGRRKMTFIKITMS-DLGEITIENDGAGIPIVKNKEHKIYIPEMVF------- 118
Query: 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCS 212
GHLLTSSNY+++E T GR+GYGAKL NI S++F V C
Sbjct: 119 ------------------GHLLTSSNYDNDESSTTAGRHGYGAKLTNILSTQFSV--LCR 158
Query: 213 EYKKSFKQVWKDNMSKVTSPEIKSGSK--DDFTKITFTPDLTK--FKMTSLDKDMVDLIT 268
K F+ W D+M K T+P + S K + T+I F PD FK + DM ++
Sbjct: 159 TEGKEFRMSWTDHMRKATAPRVSSCDKAESNLTRIKFMPDYAHFGFKNNQISLDMKRVLH 218
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAI 328
+R D AA ++V +NG K+F DY LY+ + P K N + +A
Sbjct: 219 KRIMDLAAMFPSIQVSINGVPFAFKSFDDYAGLYSIPSSDGQLPPKPFVHN-SRNGSIAF 277
Query: 329 APS-DRGFQQV-SFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNK 386
P + G +++ VN + T GG H +A D + + + + KD
Sbjct: 278 VPQLNAGAKRIFGVVNGVVTHNGGTHCNAASDILTGTLDALSRTLKKD------------ 325
Query: 387 FNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT-- 444
G + +V H I + + P FDSQ+K +
Sbjct: 326 -----------------------GKVVDANRVMRHFTILVFLIQSQPKFDSQSKARLVST 362
Query: 445 -----LQKG-----------------SFGSTCVPKLEDANDAG----------------- 465
+ KG S +L AG
Sbjct: 363 VTMPRVPKGELEQYLSSMPFLEAHVNSMSDQIAAELNKEMGAGKLLSSKSLISSITKLVD 422
Query: 466 -TKNSIDC----TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILE 520
T N D TLI+TEGDSAK+LA++ L + GVFPLRGKLLNVR K++
Sbjct: 423 ATSNKSDGKNIRTLIVTEGDSAKALALNSLSSDQKRFCGVFPLRGKLLNVRNNNLKRLKN 482
Query: 521 NAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPT 580
E+ +L LGL+ K Y ++ + LRY RL+ MTDQD DGSHIKGL+IN WP
Sbjct: 483 CKELQDLFLALGLELGKTYRSLNE---LRYQRLLTMTDQDADGSHIKGLVINAFESLWPE 539
Query: 581 LLRL--PFLEEFITPIIKAT---KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
LL+ ++ F TPI+K K ++ LSFYS +F +W+ N + Y KYYK
Sbjct: 540 LLQRHQGYISLFSTPIVKIRPRGKNQDVLSFYSFKDFHKWQRAHPNVN-YTAKYYK 594
Score = 67.4 bits (163), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 7/100 (7%)
Query: 662 PEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLP----MKPWYK 717
P Y+PIIPM+L NG+ GIG G+ + IP+++P ++ ++ MI GE + PW
Sbjct: 808 PNHYVPIIPMLLCNGSVGIGFGFASNIPSYHPLDVSAVVRSMINGETAKQVVKRLVPWAV 867
Query: 718 NFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTT 757
F+G + + F+ G+ + ++ + ++EL WTT
Sbjct: 868 GFQGTVRRGPEGEFIAVGKYSAYKNNYIHVSEL---PWTT 904
>gi|157866980|ref|XP_001682045.1| mitochondrial DNA topoisomerase II [Leishmania major strain
Friedlin]
gi|68125496|emb|CAJ03357.1| mitochondrial DNA topoisomerase II [Leishmania major strain
Friedlin]
Length = 1236
Score = 283 bits (724), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 210/634 (33%), Positives = 309/634 (48%), Gaps = 84/634 (13%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y+K + ++H+LLRP+ Y+GS+E M++ + E M + GL KI DEIL+NA
Sbjct: 7 YKKLTPIDHVLLRPEMYVGSIETQPTPMYIFDPEKGRMVWETMRVNQGLLKIVDEILLNA 66
Query: 96 CDN---KQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSS 152
DN + + I I ++ +T I+V N+G G+P+V ++ KM++P M+F
Sbjct: 67 ADNINNSKGSVRQTYINIHIS-DTGEITVENDGAGLPIVRSREHKMYIPEMVF------- 118
Query: 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCS 212
GHLLTSSNYN++ T GR+GYGAKL NI S+KF V C
Sbjct: 119 ------------------GHLLTSSNYNNDSTSTTAGRHGYGAKLTNILSTKFSV--VCR 158
Query: 213 EYKKSFKQVWKDNMSKVTSPEIK--SGSKDDFTKITFTPDLTKFKM--TSLDKDMVDLIT 268
+ F W D+M T+P + + + T++ F PD F S+ DM ++
Sbjct: 159 TDGREFHMSWTDHMRMATAPRVNRVDPKEKNVTRVKFMPDYAHFGFPSASISLDMKRVLH 218
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVA 327
+R D AA ++V LN + F DY LY+ D P +Y +P VA
Sbjct: 219 KRVMDLAAMFSKIEVRLNNVPFGFRTFTDYAGLYSLPGLDGSMPPEPFVY--TSPNGSVA 276
Query: 328 IAP--SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
P + + VS VN + T GG H +A +D I+ ++ + K K G
Sbjct: 277 YVPQLTQSPKRIVSVVNGVVTYNGGTHCNAAMD-ILDACLDSLSKNFKKNGKV------- 328
Query: 386 KFNNVKNNKLQMAKTLIDIGV------------RLGGMALKPFQVKNHIWIFINCL---- 429
V N++Q T++ V RL P KN + ++ +
Sbjct: 329 ----VDTNRVQRHFTVLVFLVQAQPKFDSQSKARLVSTVTMPRVPKNTLEKYLERMPFLE 384
Query: 430 -IVNPTFDSQTKE-NMTLQKGSFGS-----TCVPKLEDANDAGTKNSIDCTLILTEGDSA 482
VN D T E N + G S + + KL DA + TLI+TEGDSA
Sbjct: 385 AHVNSMDDQLTNELNKEIGAGRRLSSKTLISSITKLVDATSSRPDGRNIRTLIITEGDSA 444
Query: 483 KSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTV 542
K+LA++ L + GVFPLRGKLLNVR K++ E+ +L LGL+ K+Y +
Sbjct: 445 KALALNSLSSEQKKYCGVFPLRGKLLNVRNKNLKRLKTCKELQDLFLSLGLELGKEYRSP 504
Query: 543 EDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR--LPFLEEFITPIIK---A 597
+ LRY RL++MTDQD DGSHIKGL+IN WP LL+ ++ F TPI+K +
Sbjct: 505 AE---LRYQRLLVMTDQDADGSHIKGLVINAFESLWPKLLQNNPGYISLFSTPIVKIKVS 561
Query: 598 TKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
K++E ++F+S +F W+ + Y KYYK
Sbjct: 562 GKSKEAIAFHSFRDFHRWQRAHPSAR-YTAKYYK 594
Score = 70.9 bits (172), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLP----MKPW 715
+EP Y+PI+PM+L NGA GIG G+ T IP+ +P ++ ++ MI GE + PW
Sbjct: 806 VEPHHYVPILPMLLCNGAVGIGFGFATTIPSFHPLDVSAAVRAMINGESAKQVVRNLVPW 865
Query: 716 YKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTT 757
F+G + D+ F+ G+ + + I+E+ W T
Sbjct: 866 AVGFQGTVRRGPDNEFIAVGKYTAHPNGRFHISEI---PWMT 904
>gi|170042914|ref|XP_001849153.1| terminal deoxycytidyl transferase rev1 [Culex quinquefasciatus]
gi|167866327|gb|EDS29710.1| terminal deoxycytidyl transferase rev1 [Culex quinquefasciatus]
Length = 1038
Score = 283 bits (724), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 176/461 (38%), Positives = 246/461 (53%), Gaps = 92/461 (19%)
Query: 1319 GGYMEAKKRKLEEQFELEA-NSDSR-GGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELK 1376
G YM+AK KLEEQF A N + + +F G++IFVNGYT PSAEELK
Sbjct: 17 GDYMDAKISKLEEQFRHNAANVELKLSNLFDGISIFVNGYTS-----------PSAEELK 65
Query: 1377 ALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKK 1436
LMM HGG +HHY+ TT++IAS LP K+K + D I++P+W+VD I+ ++D+K
Sbjct: 66 RLMMQHGGTFHHYKRPTTTYVIASILPDVKVKSIT-SDIILRPQWVVDCIAQNLIVDYKP 124
Query: 1437 YLLYTGTDAKPLTKL----LQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTE----E 1488
YLLY+ + KL L K E+ P H + D ++ E
Sbjct: 125 YLLYSNSSKASQPKLAFGRLDKQ--EDLRKPV----------HKAEGKDDINRDEFMNLM 172
Query: 1489 SKSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFY 1548
SK +N + K + +E V+ K + + A++ +FL EF+
Sbjct: 173 SKLHVLNEQ-----------------MKAAPVEVVSEETKKSDSRTALVATDPNFLPEFF 215
Query: 1549 NKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPS 1608
SRLHH++T+GS FKQ+V+ELRE HDG F + + + + + ++ E T + P
Sbjct: 216 AHSRLHHIATLGSGFKQHVSELREAHDGKFPARDTLAQ---EIPTAKSDEFEATPAAGP- 271
Query: 1609 PSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSS---KVREGVDRQAEFDI 1665
+IMHIDMDCFFVSVG+R HPEL+ +PVAV H KG+ + + R G DR E ++
Sbjct: 272 ------LIMHIDMDCFFVSVGLRSHPELRGQPVAVTHSKGSEAGTMQTRPGQDRAKEIEL 325
Query: 1666 YRQRTMNR--------------------------MGLNTREYGLGNGMFVGHALKKCPNL 1699
Y++R R R+ G+ NGMFVG ALK CP L
Sbjct: 326 YQKRLEERYKTPDIPYESRLLNVTDNNSMSEIASCSYEARQKGVKNGMFVGSALKLCPEL 385
Query: 1700 KIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLN 1740
K + YDFEGYKEV++ LYN +A TLNIEAVS +E F++
Sbjct: 386 KTIAYDFEGYKEVAFALYNTVAKYTLNIEAVS--CDEMFVD 424
Score = 264 bits (674), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 131/307 (42%), Positives = 185/307 (60%), Gaps = 43/307 (14%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEM+VD + L+ L + F S+LR I + TGC CS G G+N+LQAR+ATK+
Sbjct: 413 IEAVSCDEMFVDLTDLISSTGLDVMDFVSFLRAQIKQVTGCPCSAGVGANRLQARMATKR 472
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKPNGQ++L P + ++M +I + +LPG+G S ++L LG TCGDLQN+++ LQ E
Sbjct: 473 AKPNGQYYLAPDGVEEYMRDIAIGELPGIGPSTSYRLKQLGFGTCGDLQNVAVAILQREF 532
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
G K G +Y+ CRG D++ L ++ RKSVS +VNYGIRF+ E+E F+KQL E+ KRL
Sbjct: 533 GKKFGDMIYQACRGVDERPLVYDKVRKSVSVDVNYGIRFKAEGEVERFMKQLTEEITKRL 592
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVR 2138
E+K +GK +T+KL+VRS EAP E +K++GHG+CD ITKS L Y L +
Sbjct: 593 CEIKQRGKLVTVKLLVRSPEAPVETAKYMGHGLCDIITKSQPLKEYSCELEV-------- 644
Query: 2139 SAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQ 2198
I + VL ++ ++ P ELRGIG+Q
Sbjct: 645 -----------------------------------IQRAVLGLMKQIAAPPHELRGIGLQ 669
Query: 2199 VSKLEHQ 2205
+SK E +
Sbjct: 670 ISKFEEK 676
Score = 48.9 bits (115), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 1192 ASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQLISLQQDKQLPAIQVISIRSPRAR 1247
A++ +FL EF+ SRLHH++T+GS FKQ+V++L D + PA ++ P A+
Sbjct: 205 ATDPNFLPEFFAHSRLHHIATLGSGFKQHVSELRE-AHDGKFPARDTLAQEIPTAK 259
Score = 47.8 bits (112), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 17/173 (9%)
Query: 1738 FLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPSPSPILDMST 1797
FL ALP ++RQEV + Q+ + +TEP ++ L TP SP+ +
Sbjct: 869 FLQALPPELRQEVERQIELQKDTMV--ITSTEPEFEE-------RLQVTPEASPV--KAE 917
Query: 1798 SILDTTTSHILSSNVSLQ-EMRTMLREWMCESQ-PEPSDIEMFSEYLSNLVEERHLNPIV 1855
I+ NV L+ R +L W+ PEP D++M + +L+E + L +
Sbjct: 918 QIVAEEDDE--GENVLLRPNWRQLLTAWVESGDVPEPVDVDMIAAGACDLIERKMLYELQ 975
Query: 1856 ILLRFLRRHVGKK--ESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDE 1906
LR L R +G++ W AY ++ VQ M ++ + C E
Sbjct: 976 QALRLLNRTIGEQVGGGCGWHGAYCRIVERVQVGMVAGYGTKLAVPKGFECGE 1028
>gi|255553522|ref|XP_002517802.1| DNA topoisomerase II, putative [Ricinus communis]
gi|223543074|gb|EEF44609.1| DNA topoisomerase II, putative [Ricinus communis]
Length = 1212
Score = 283 bits (724), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 168/346 (48%), Positives = 208/346 (60%), Gaps = 88/346 (25%)
Query: 335 FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNK 394
+ +VSFVNSIAT KGG HVD V I ++ VV KKNK+
Sbjct: 18 WTKVSFVNSIATIKGGTHVDYVTSQISNYLVGVVNKKNKN-------------------- 57
Query: 395 LQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC 454
+K VKN++W+F+N LI NP FDSQTKE +TL++ +FGS C
Sbjct: 58 ----------------ANIKAHHVKNYLWVFVNALIDNPAFDSQTKETLTLRQSNFGSKC 101
Query: 455 -------------------------------------------VPKLEDANDAGTKNSID 471
+PKLEDAN+AGTKNS
Sbjct: 102 ELPEDFLKKVAKSDILENLLSWAKFKNDKELKKTDGTKRGRVNIPKLEDANEAGTKNSHK 161
Query: 472 CTLILTEGDSAKSLAVSGLGVVG---RDKYGVFPLRGKLLNVREATHKQILENAEINNLV 528
CTLILTEGDSAK+LA+SGLG + RD YGVFPLRGKLLNVREAT KQ+ EN EI ++
Sbjct: 162 CTLILTEGDSAKTLAISGLGALPQDVRDLYGVFPLRGKLLNVREATPKQLNENKEIESIK 221
Query: 529 KILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FL 587
KILGLQ +K+Y +V K LRYG LMIMTDQD DGSHIKGL+INFI++ WP+LL++P FL
Sbjct: 222 KILGLQQNKQYDSV---KPLRYGHLMIMTDQDYDGSHIKGLLINFIYYFWPSLLKIPSFL 278
Query: 588 EEFITPIIKAT-KAREELSFYSLPEFEEWKEETT-NWHTYKIKYYK 631
EFITPI+KAT ++ + LSFY++PE+ WKE N + + IKYYK
Sbjct: 279 VEFITPIVKATHRSGKILSFYTMPEYYSWKESLMGNANGWTIKYYK 324
Score = 132 bits (333), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 78/113 (69%), Gaps = 4/113 (3%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY PIIP+VLVNG EGIGTGW T IPN+NPR+IV N++R + GE PM PWYK F
Sbjct: 534 IEPTWYAPIIPLVLVNGCEGIGTGWSTFIPNYNPRDIVANLRRFLNGEKMEPMHPWYKGF 593
Query: 720 KGEIDYC----GDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLH 768
KG I+ G + VNG I +++ + ITEL + +WT +YKD L++++
Sbjct: 594 KGTIEKSASKEGGGSYAVNGIIEEVNETTVRITELPIRRWTDEYKDFLNSVIE 646
Score = 48.9 bits (115), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 830 AAEGEDDEAGSQTQEEEDPDK------DYDYLLGMTFWSLTMERKNELLKKRDDKMTELN 883
A +D E T++ E+ K DY+YLL M+ +LT+E+ +L +D E+
Sbjct: 803 AGAADDTEESESTEDVEENSKTGVQATDYEYLLSMSIGTLTLEKVQKLCADKDKISEEVE 862
Query: 884 ILKKKAPTDLWSDDLDAL 901
L++ AP DLW DL+A
Sbjct: 863 NLRRTAPKDLWLKDLEAF 880
>gi|135994|sp|P27570.1|TOP2_CRIFA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
II
gi|11001|emb|CAA42182.1| kinetoplast-associated type II DNA topoisomerase (toptIImt)
[Crithidia fasciculata]
Length = 1239
Score = 283 bits (723), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 204/638 (31%), Positives = 314/638 (49%), Gaps = 92/638 (14%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK + ++H+LLRP+ Y+GS+E + M++ + M + GL KI DEIL+NA
Sbjct: 7 YQKLTPIDHVLLRPEMYVGSIETQSIPMFVFDPAKGKMVWESMQVNQGLLKIVDEILLNA 66
Query: 96 CDN---KQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSS 152
DN R +M I I ++ ++ I V N+G G+P+V+ K+ KM++P M+F
Sbjct: 67 ADNINNSVRGARMTYISIKIS-DSGEIMVENDGAGLPIVKSKEHKMYIPEMVF------- 118
Query: 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCS 212
GHLLTSSNYN++ T GR+GYGAKL NI S+KF V C
Sbjct: 119 ------------------GHLLTSSNYNNDASSTTAGRHGYGAKLTNILSTKFSV--VCR 158
Query: 213 EYKKSFKQVWKDNMSKVTSPEIKS--GSKDDFTKITFTPDLTKFKM--TSLDKDMVDLIT 268
+ F W D+M T+P + + + + T++TF PD F ++ DM ++
Sbjct: 159 TAGREFHMSWTDHMRMATTPRVSNVDPKEKNVTRVTFMPDYAHFGFPTAAISLDMKRVLH 218
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAI 328
+R D AA ++V LN + F DY +LY+ DG + + P +A
Sbjct: 219 KRIMDLAAMFSKIEVRLNNVPFGFQTFNDYARLYS-LPGADGAMPPEPFVHTGPNGSIAF 277
Query: 329 AP--SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTI------- 379
P + + V VN + T GG H + ++ + + + + KD G I
Sbjct: 278 VPQLTQSPKRIVGVVNGVVTYNGGTHCTSAMEILETGLDSLSRSLKKD-GKVIDTNRVAR 336
Query: 380 ---IMLF----GNKFNNVKNNKL-------QMAKTLIDIGVRLGGMALKPFQVKNHIWIF 425
+++F KF++ +L ++ +T +D +A PF ++ H+
Sbjct: 337 HFTVLVFLIQSQPKFDSQSKARLVSTVTMPRVPRTALD-----QYLAAMPF-LEAHM--- 387
Query: 426 INCLIVNPTFDSQTKENMTLQKGS-------FGSTCVPKLEDANDAGTKNSIDCTLILTE 478
+ D Q + + G+ + + KL DA + + TLI+TE
Sbjct: 388 -------NSMDDQLAAELNKEIGTGKRLSSRSLISSITKLVDATSSRSDGKNIRTLIVTE 440
Query: 479 GDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKK 538
GDSAK+LA++ L + GVFPLRGKLLNVR K++ E+ +L LGL+ K
Sbjct: 441 GDSAKALALNSLSSEQKKFCGVFPLRGKLLNVRNKNLKRLKTCKELQDLFLALGLELGKT 500
Query: 539 YTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL--PFLEEFITPIIK 596
Y + + LRY RL++MTDQD DGSHIKGL+IN WP+LL+ ++ F TPI+K
Sbjct: 501 YKSPAE---LRYQRLLVMTDQDADGSHIKGLVINAFESLWPSLLQHNPGYISLFSTPIVK 557
Query: 597 AT---KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
KA+E ++F+S +F W+ N Y KYYK
Sbjct: 558 IKVNGKAKEVVAFHSFRDFHRWQRANPNAR-YSAKYYK 594
Score = 67.4 bits (163), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLP----MKPW 715
+EP Y+PI+P++L NGA GIG G+ T IP+ +P ++ ++ MI GE + PW
Sbjct: 806 VEPNHYVPILPLLLCNGAVGIGFGFATNIPSFHPLDVSAAVRAMINGESAKQVVRNLVPW 865
Query: 716 YKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTT 757
F+G + + ++ G+ + +L ++EL W T
Sbjct: 866 AVGFQGTVRRGPEKEYIAVGKYTAHRNGRLHVSEL---PWMT 904
>gi|195490163|ref|XP_002093027.1| GE21096 [Drosophila yakuba]
gi|194179128|gb|EDW92739.1| GE21096 [Drosophila yakuba]
Length = 1004
Score = 283 bits (723), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 173/451 (38%), Positives = 243/451 (53%), Gaps = 80/451 (17%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKAL 1378
GGY EAKK KLEEQF ++ + +F+G++IFVNG T PSA+ELK +
Sbjct: 13 GGYFEAKKSKLEEQFAAASDPFRKSDLFEGISIFVNGRTD-----------PSADELKRI 61
Query: 1379 MMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYL 1438
MM+HGG +HHYE S TT+IIAS LP K++ + K I +W+VD ++ GK++D+K YL
Sbjct: 62 MMVHGGTFHHYERSHTTYIIASVLPDVKVRNMNLS-KFIGAKWVVDCLAKGKIVDYKPYL 120
Query: 1439 LYTGTD--------AKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESK 1490
LYT KP +S + P +K+ +E S + + +
Sbjct: 121 LYTNQKTSQPKLIFGKPKDSSANESKLDVDVEPPKAKTPMEVGSSKDEMQLELGGILKEL 180
Query: 1491 SEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNK 1550
+AV + +K + + ESK+ N+SA +++ + A++ +FL EFY
Sbjct: 181 QQAVATSPAKETSVS-----------ESKI--TNLSATSSNSTTARTAADPNFLSEFYKN 227
Query: 1551 SRLHHLSTMGSMFKQYVNELREKH-DGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSP 1609
SRLHH++T+G+ FKQYV +LR H D F E ++ SL E E
Sbjct: 228 SRLHHIATLGAGFKQYVCQLRLDHGDKGFPKRETLK----SLARAERHGSER-------- 275
Query: 1610 SEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSK----VREGVDRQAEFDI 1665
+MHIDMDCFFVSVG+R PEL+ +P+AV H KG ++ V DR+AE ++
Sbjct: 276 -----YVMHIDMDCFFVSVGLRARPELRGQPIAVTHSKGGNAATDVPVHPQADRKAELEL 330
Query: 1666 YRQRTMN-----------------RMGLN--------TREYGLGNGMFVGHALKKCPNLK 1700
+ QR + +M L+ RE G+ NGMFVG ALK CP LK
Sbjct: 331 FAQRFEHQFHDGDKAEKVRSGFEKKMSLSEIASCSYEAREKGIRNGMFVGQALKLCPELK 390
Query: 1701 IVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
+PYDFEGYKEV+ LY+ +A TLNIEAVS
Sbjct: 391 TIPYDFEGYKEVASTLYDTVAQYTLNIEAVS 421
Score = 241 bits (614), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 132/311 (42%), Positives = 181/311 (58%), Gaps = 44/311 (14%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEM+V+ + L+ EL++ + F S+LR+ + +TGC CS G NKL AR+ATK+
Sbjct: 417 IEAVSCDEMFVELTDLVGELNVDVMAFVSHLRQEVHTKTGCPCSAGVAGNKLLARMATKE 476
Query: 1959 AKPNGQFHL-TPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNE 2017
AKPNGQF L + I +M + L LPGVG S+ KL G CGD+QN SL++L+
Sbjct: 477 AKPNGQFLLDAKKDILAYMAPMSLELLPGVGSSMSHKLKQAGLHNCGDVQNSSLEKLETV 536
Query: 2018 VGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKR 2077
+G K G L+++C+G DD+ L +E RK+VSAE+N+GIRF E E FL+QL+ EV KR
Sbjct: 537 LGKKLGQNLFQNCKGIDDRPLAYEQTRKTVSAEMNFGIRFTKTAECEQFLRQLSEEVTKR 596
Query: 2078 LEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLV 2137
L E+K K + I LK+MVR+AEAP E SK++GHGVCD I KSS
Sbjct: 597 LVEIKRKARSINLKIMVRAAEAPVETSKYMGHGVCDTINKSS------------------ 638
Query: 2138 RSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGI 2197
+ H D + I VL ++ + + P ELRGIGI
Sbjct: 639 -----------LIKHATDD--------------VNVITSMVLNLMKEADLPPHELRGIGI 673
Query: 2198 QVSKLEHQSKT 2208
++KLE S+
Sbjct: 674 HLTKLEDASEV 684
Score = 58.9 bits (141), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%)
Query: 1178 NISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQLISLQQDKQLP 1234
N+SA +++ + A++ +FL EFY SRLHH++T+G+ FKQYV QL DK P
Sbjct: 201 NLSATSSNSTTARTAADPNFLSEFYKNSRLHHIATLGAGFKQYVCQLRLDHGDKGFP 257
Score = 41.6 bits (96), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1818 RTMLREWMC-ESQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVGKKEST--VWA 1874
+ +L EW+ E P+P+D+++ + +S+++ LN + ++++L R + K S+ W
Sbjct: 911 KDLLNEWVSREEVPKPTDVDLIHQQVSHMIGSDQLNHMYDVMKYLCRIINAKRSSSCCWH 970
Query: 1875 EAYQEMLSCVQSAM 1888
AY+ + +QS M
Sbjct: 971 LAYKHIEENIQSQM 984
>gi|146082133|ref|XP_001464455.1| mitochondrial DNA topoisomerase II [Leishmania infantum JPCM5]
gi|134068547|emb|CAM66843.1| mitochondrial DNA topoisomerase II [Leishmania infantum JPCM5]
Length = 1236
Score = 281 bits (718), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 207/657 (31%), Positives = 310/657 (47%), Gaps = 130/657 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y+K + ++H+LLRP+ Y+GS+E M++ + E M + GL KI DEIL+NA
Sbjct: 7 YKKLTPIDHVLLRPEMYVGSIETQPTPMYIFDPEKGRMVWETMRVNQGLLKIVDEILLNA 66
Query: 96 CDN---KQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSS 152
DN + + I I ++ +T I+V N+G G+P+V ++ KM++P M+F
Sbjct: 67 ADNINNSKGSVRQTYISIHIS-DTGEITVENDGAGLPIVRSREHKMYIPEMVF------- 118
Query: 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCS 212
GHLLTSSNYN++ T GR+GYGAKL NI S+KF V C
Sbjct: 119 ------------------GHLLTSSNYNNDSTSTTAGRHGYGAKLTNILSTKFSV--VCR 158
Query: 213 EYKKSFKQVWKDNMSKVTSPEIK--SGSKDDFTKITFTPDLTKFKM--TSLDKDMVDLIT 268
+ F W D+M T+P + + + T++ F PD F S+ DM ++
Sbjct: 159 TDGREFHMSWTDHMRMATAPRVNRVDPKEKNVTRVKFMPDYAHFGFPNASISLDMKRVLH 218
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVA 327
+R D AA ++V LN + F DY +LY+ D P +Y +P VA
Sbjct: 219 KRIMDLAAMFSKIEVRLNNVPFGFRTFTDYARLYSLPGLDGSMPPEPFVY--TSPNGSVA 276
Query: 328 IAP--SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
P + + V VN + T GG H +A +D I+ ++ + K
Sbjct: 277 YVPQLTQSPKRIVGVVNGVVTYNGGTHCNAAMD-ILDSCLDSLSK--------------- 320
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT- 444
N K N G + +V+ H + + + P FDSQ+K +
Sbjct: 321 ---NFKKN----------------GKVVDTNRVQRHFTVLVFLIQTQPKFDSQSKARLVS 361
Query: 445 ---------------LQKGSFGSTCVPKLED--AND------AGTKNS-----------I 470
L++ F V ++D AN+ AG + S +
Sbjct: 362 TVTMPRVPKNTLEKYLERMPFLEAHVNSMDDQLANELNKEIGAGRRLSSKTLISAITKLV 421
Query: 471 DC-----------TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQIL 519
D TLI+TEGDSAK+LA++ L + GVFPLRGKLLNVR K++
Sbjct: 422 DATSSRPDGRNIRTLIITEGDSAKALALNSLSSEQKKYCGVFPLRGKLLNVRNKNLKRLK 481
Query: 520 ENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWP 579
E+ +L LGL+ K+Y + + LRY RL++MTDQD DGSHIKGL+IN WP
Sbjct: 482 TCKELQDLFLSLGLELGKEYRSPAE---LRYQRLLVMTDQDADGSHIKGLVINAFESLWP 538
Query: 580 TLLR--LPFLEEFITPIIK---ATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
LL+ ++ F TPI+K + K++E ++F+S +F W+ + Y KYYK
Sbjct: 539 KLLQNNPGYISLFSTPIVKIKVSGKSKEVIAFHSFRDFHRWQRAHPSAR-YTAKYYK 594
Score = 70.5 bits (171), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLP----MKPW 715
+EP Y+PI+PM+L NGA GIG G+ T IP+ +P ++ ++ MI GE + PW
Sbjct: 806 VEPHHYVPILPMLLCNGAVGIGFGFATTIPSFHPLDVSAAVRAMINGESAKQVVRNLVPW 865
Query: 716 YKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTT 757
F+G + D+ F+ G+ + + I+E+ W T
Sbjct: 866 AVGFQGTVRRGPDNEFIAVGKYTAHPNGRFHISEI---PWMT 904
>gi|4929497|gb|AAD34021.1|AF150876_1 DNA topoisomerase II [Leishmania donovani]
Length = 1236
Score = 281 bits (718), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 207/657 (31%), Positives = 310/657 (47%), Gaps = 130/657 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y+K + ++H+LLRP+ Y+GS+E M++ + E M + GL KI DEIL+NA
Sbjct: 7 YKKLTPIDHVLLRPEMYVGSIETQPTPMYIFDPEKGRMVWETMRVNQGLLKIVDEILLNA 66
Query: 96 CDN---KQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSS 152
DN + + I I ++ +T I+V N+G G+P+V ++ KM++P M+F
Sbjct: 67 ADNINNSKGSVRQTYISIHIS-DTGEITVENDGAGLPIVRSREHKMYIPEMVF------- 118
Query: 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCS 212
GHLLTSSNYN++ T GR+GYGAKL NI S+KF V C
Sbjct: 119 ------------------GHLLTSSNYNNDSTSTTAGRHGYGAKLTNILSTKFSV--VCR 158
Query: 213 EYKKSFKQVWKDNMSKVTSPEIK--SGSKDDFTKITFTPDLTKFKM--TSLDKDMVDLIT 268
+ F W D+M T+P + + + T++ F PD F S+ DM ++
Sbjct: 159 TDGREFHMSWTDHMRMATAPRVNRVDPKEKNVTRVKFMPDYAHFGFPNASISLDMKRVLH 218
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVA 327
+R D AA ++V LN + F DY +LY+ D P +Y +P VA
Sbjct: 219 KRIMDLAAMFSKIEVRLNNVPFGFRTFTDYARLYSLPGLDGSMPPEPFVY--TSPNGSVA 276
Query: 328 IAP--SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
P + + V VN + T GG H +A +D I+ ++ + K
Sbjct: 277 YVPQLTQSPKRIVGVVNGVVTYNGGTHCNAAMD-ILDSCLDSLSK--------------- 320
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT- 444
N K N G + +V+ H + + + P FDSQ+K +
Sbjct: 321 ---NFKKN----------------GKVVDTNRVQRHFTVLVFLIQTQPKFDSQSKARLVS 361
Query: 445 ---------------LQKGSFGSTCVPKLED--AND------AGTKNS-----------I 470
L++ F V ++D AN+ AG + S +
Sbjct: 362 TVTMPRVPKNTLEKYLERMPFLEAHVNSMDDQLANELNKEIGAGRRLSSKTLISAITKLV 421
Query: 471 DC-----------TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQIL 519
D TLI+TEGDSAK+LA++ L + GVFPLRGKLLNVR K++
Sbjct: 422 DATSSRPDGRNIRTLIITEGDSAKALALNSLSSEQKKYCGVFPLRGKLLNVRNKNLKRLK 481
Query: 520 ENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWP 579
E+ +L LGL+ K+Y + + LRY RL++MTDQD DGSHIKGL+IN WP
Sbjct: 482 TCKELQDLFLSLGLELGKEYRSPAE---LRYQRLLVMTDQDADGSHIKGLVINAFESLWP 538
Query: 580 TLLR--LPFLEEFITPIIK---ATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
LL+ ++ F TPI+K + K++E ++F+S +F W+ + Y KYYK
Sbjct: 539 KLLQNNPGYISLFSTPIVKIKVSGKSKEVIAFHSFRDFHRWQRAHPSAR-YTAKYYK 594
Score = 70.5 bits (171), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLP----MKPW 715
+EP Y+PI+PM+L NGA GIG G+ T IP+ +P ++ ++ MI GE + PW
Sbjct: 806 VEPHHYVPILPMLLCNGAVGIGFGFATTIPSFHPLDVSAAVRAMINGESAKQVVRNLVPW 865
Query: 716 YKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTT 757
F+G + D+ F+ G+ + + I+E+ W T
Sbjct: 866 AVGFQGTVRRGPDNEFIAVGKYTAHPNGRFHISEI---PWMT 904
>gi|9624859|gb|AAF86355.1| DNA Topoisomerase II [Leishmania infantum]
Length = 1236
Score = 281 bits (718), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 207/657 (31%), Positives = 310/657 (47%), Gaps = 130/657 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y+K + ++H+LLRP+ Y+GS+E M++ + E M + GL KI DEIL+NA
Sbjct: 7 YKKLTPIDHVLLRPEMYVGSIETQPTPMYIFDPEKGRMVWETMRVNQGLLKIVDEILLNA 66
Query: 96 CDN---KQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSS 152
DN + + I I ++ +T I+V N+G G+P+V ++ KM++P M+F
Sbjct: 67 ADNINNSKGSVRQTYISIHIS-DTGEITVENDGAGLPIVRSREHKMYIPEMVF------- 118
Query: 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCS 212
GHLLTSSNYN++ T GR+GYGAKL NI S+KF V C
Sbjct: 119 ------------------GHLLTSSNYNNDSTSTTAGRHGYGAKLTNILSTKFSV--VCR 158
Query: 213 EYKKSFKQVWKDNMSKVTSPEIK--SGSKDDFTKITFTPDLTKFKM--TSLDKDMVDLIT 268
+ F W D+M T+P + + + T++ F PD F S+ DM ++
Sbjct: 159 TDGREFHMSWTDHMRMATAPRVNRVDPKEKNVTRVKFMPDYAHFGFPNASISLDMKRVLH 218
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVA 327
+R D AA ++V LN + F DY +LY+ D P +Y +P VA
Sbjct: 219 KRIMDLAAMFSKIEVRLNNVPFGFRTFTDYARLYSLPGLDGSMPPEPFVY--TSPNGSVA 276
Query: 328 IAP--SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
P + + V VN + T GG H +A +D I+ ++ + K
Sbjct: 277 YVPQLTQSPKRIVGVVNGVVTYNGGTHCNAAMD-ILDSCLDSLSK--------------- 320
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT- 444
N K N G + +V+ H + + + P FDSQ+K +
Sbjct: 321 ---NFKKN----------------GKVVDTNRVQRHFTVLVFLIQTQPKFDSQSKARLVS 361
Query: 445 ---------------LQKGSFGSTCVPKLED--AND------AGTKNS-----------I 470
L++ F V ++D AN+ AG + S +
Sbjct: 362 TVTMPRVPKNTLEKYLERMPFLEAHVNSMDDQLANELNKEIGAGRRLSSKTLISAITKLV 421
Query: 471 DC-----------TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQIL 519
D TLI+TEGDSAK+LA++ L + GVFPLRGKLLNVR K++
Sbjct: 422 DATSSRPDGRNIRTLIITEGDSAKALALNSLSSEQKKYCGVFPLRGKLLNVRNKNLKRLK 481
Query: 520 ENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWP 579
E+ +L LGL+ K+Y + + LRY RL++MTDQD DGSHIKGL+IN WP
Sbjct: 482 TCKELQDLFLSLGLELGKEYRSPAE---LRYQRLLVMTDQDADGSHIKGLVINAFESLWP 538
Query: 580 TLLR--LPFLEEFITPIIK---ATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
LL+ ++ F TPI+K + K++E ++F+S +F W+ + Y KYYK
Sbjct: 539 KLLQNNPGYISLFSTPIVKIKVSGKSKEVIAFHSFRDFHRWQRAHPSAR-YTAKYYK 594
Score = 70.1 bits (170), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLP----MKPW 715
+EP Y+PI+PM+L NGA GIG G+ T IP+ +P ++ ++ MI GE + PW
Sbjct: 806 VEPHHYVPILPMLLCNGAVGIGFGFATTIPSFHPLDVSAAVRGMINGESAKQVVRNIVPW 865
Query: 716 YKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTT 757
F+G + D+ F+ G+ + + I+E+ W T
Sbjct: 866 AVGFQGTVRRGPDNEFIAVGKYTAHPNGRFHISEI---PWMT 904
>gi|398012922|ref|XP_003859654.1| mitochondrial DNA topoisomerase II [Leishmania donovani]
gi|322497870|emb|CBZ32946.1| mitochondrial DNA topoisomerase II [Leishmania donovani]
Length = 1236
Score = 281 bits (718), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 207/657 (31%), Positives = 310/657 (47%), Gaps = 130/657 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y+K + ++H+LLRP+ Y+GS+E M++ + E M + GL KI DEIL+NA
Sbjct: 7 YKKLTPIDHVLLRPEMYVGSIETQPTPMYIFDPEKGRMVWETMRVNQGLLKIVDEILLNA 66
Query: 96 CDN---KQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSS 152
DN + + I I ++ +T I+V N+G G+P+V ++ KM++P M+F
Sbjct: 67 ADNINNSKGSVRQTYISIHIS-DTGEITVENDGAGLPIVRSREHKMYIPEMVF------- 118
Query: 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCS 212
GHLLTSSNYN++ T GR+GYGAKL NI S+KF V C
Sbjct: 119 ------------------GHLLTSSNYNNDSTSTTAGRHGYGAKLTNILSTKFSV--VCR 158
Query: 213 EYKKSFKQVWKDNMSKVTSPEIK--SGSKDDFTKITFTPDLTKFKM--TSLDKDMVDLIT 268
+ F W D+M T+P + + + T++ F PD F S+ DM ++
Sbjct: 159 TDGREFHMSWTDHMRMATAPRVNRVDPKEKNVTRVKFMPDYAHFGFPNASISLDMKRVLH 218
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVA 327
+R D AA ++V LN + F DY +LY+ D P +Y +P VA
Sbjct: 219 KRIMDLAAMFSKIEVRLNNVPFGFRTFTDYARLYSLPGLDGSMPPEPFVY--TSPNGSVA 276
Query: 328 IAP--SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
P + + V VN + T GG H +A +D I+ ++ + K
Sbjct: 277 YVPQLTQSPKRIVGVVNGVVTYNGGTHCNAAMD-ILDSCLDSLSK--------------- 320
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT- 444
N K N G + +V+ H + + + P FDSQ+K +
Sbjct: 321 ---NFKKN----------------GKVVDTNRVQRHFTVLVFLIQTQPKFDSQSKARLVS 361
Query: 445 ---------------LQKGSFGSTCVPKLED--AND------AGTKNS-----------I 470
L++ F V ++D AN+ AG + S +
Sbjct: 362 TVTMPRVPKNTLEKYLERMPFLEAHVNSMDDQLANELNKEIGAGRRLSSKTLISAITKLV 421
Query: 471 DC-----------TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQIL 519
D TLI+TEGDSAK+LA++ L + GVFPLRGKLLNVR K++
Sbjct: 422 DATSSRPDGRNIRTLIITEGDSAKALALNSLSSEQKKYCGVFPLRGKLLNVRNKNLKRLK 481
Query: 520 ENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWP 579
E+ +L LGL+ K+Y + + LRY RL++MTDQD DGSHIKGL+IN WP
Sbjct: 482 TCKELQDLFLSLGLELGKEYRSPAE---LRYQRLLVMTDQDADGSHIKGLVINAFESLWP 538
Query: 580 TLLR--LPFLEEFITPIIK---ATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
LL+ ++ F TPI+K + K++E ++F+S +F W+ + Y KYYK
Sbjct: 539 KLLQNNPGYISLFSTPIVKIKVSGKSKEVIAFHSFRDFHRWQRAHPSAR-YTAKYYK 594
Score = 70.5 bits (171), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLP----MKPW 715
+EP Y+PI+PM+L NGA GIG G+ T IP+ +P ++ ++ MI GE + PW
Sbjct: 806 VEPHHYVPILPMLLCNGAVGIGFGFATTIPSFHPLDVSAAVRAMINGESAKQVVRNLVPW 865
Query: 716 YKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTT 757
F+G + D+ F+ G+ + + I+E+ W T
Sbjct: 866 AVGFQGTVRRGPDNEFIAVGKYTAHPNGRFHISEI---PWMT 904
>gi|109287964|ref|YP_654658.1| hypothetical protein MIV086L [Invertebrate iridescent virus 3]
gi|123862744|sp|Q196X4.1|TOP2_IIV3 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
II
gi|106073587|gb|ABF82116.1| hypothetical protein MIV086L [Aedes taeniorhynchus iridescent
virus]
Length = 1113
Score = 280 bits (715), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 207/622 (33%), Positives = 307/622 (49%), Gaps = 51/622 (8%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K+ ++H+L D YIG P + W+ + N + R T L +IF E+L NA
Sbjct: 9 YTIKNDIQHVLDCSDVYIGDTAPTARSEWMFDDAVNQIVWRPTTTPEALVRIFVEVLTNA 68
Query: 96 CDNKQRDPKMN---C--IKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT--MIFGHL 148
DN +R C IK+ V+ +T SVWN+G+ IPVV++ D + P
Sbjct: 69 VDNIERSINGGHELCKNIKVDVDLKTGKTSVWNDGQVIPVVKNCDNGVVQPPPPTTEQDR 128
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
L N E + T+IFGH TSSNY++E D+V+G +NG G K NIFSS F V
Sbjct: 129 LAYEKLNRE------YIHTIIFGHFRTSSNYDNETDQVSG-KNGVGVKCTNIFSSWFSVV 181
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLI 267
+ K F Q W+ NM+K +P++ K K +T + + PD +FK+ S +D+ +
Sbjct: 182 GVDPDRKLKFSQEWRSNMTKSGAPQVVKCALKTGYTLVEYVPDFARFKLKSYPEDVESIF 241
Query: 268 TRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVA 327
+ DA+A + F NGE+ VKN Y KLY + + D V I Y++ +V
Sbjct: 242 KKLVVDASAFFPNTAFFFNGERTVVKNAVAYAKLYYNLNETAVDSVVIDYKDS----KVV 297
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVK-KKNKDLG----CTIIML 382
+ S VSFVN T GG+HV I ++ + KKN L L
Sbjct: 298 VVGSATPLPPVSFVNGQITPAGGQHVTNWSRVIFGALLAALNGKKNVSLTKADIAPYFQL 357
Query: 383 FGN------KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFD 436
F + KF+ N L+ K + + LK W I+ +
Sbjct: 358 FIHSKVSKPKFDGQNKNCLKSPKVEAHLDATILKKMLK--------WKIISTIQDKVV-- 407
Query: 437 SQTKENMTLQKGSFGSTCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGL--GVV- 493
++KE + L+K T + K+ D D + D LI+ EG SAKS AV+G+ G+
Sbjct: 408 -KSKEYLALKKIECRRTPIVKV-DGYDQANRLGPDSVLIVCEGLSAKSYAVAGIQKGLFN 465
Query: 494 --GRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYG 551
GR +G+ PLRGK LNV+ T +I +N +++ +K+L L+++ Y + TL YG
Sbjct: 466 KKGRTYFGILPLRGKFLNVKNTTPLKIGQNKVVSDFIKVLNLKFNLDYRKATNYATLNYG 525
Query: 552 RLMIMTDQDQDGSHIKGLIINFIHHNWPTLL-RLPFLEEFITPIIKATKAREELS-FYSL 609
L+I+TD D+DG HIKGLI+N IH +PTL R F+ TPI+K + + + FY
Sbjct: 526 TLLILTDADKDGIHIKGLILNLIHELFPTLFHRQGFIYSMETPIVKILHKKGQPTLFYDE 585
Query: 610 PEFEEWKEETTNWHTYKIKYYK 631
FE+W+ + + KYYK
Sbjct: 586 NSFEDWRAQHPELKHF--KYYK 605
Score = 106 bits (264), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Query: 661 EPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP---LPMKPWYK 717
EP ++PIIP+VLVNG+ GIGTGW +P +NP E++ I+ + +D LP KPWY+
Sbjct: 817 EPVHFVPIIPLVLVNGSVGIGTGWSCFVPQYNPLELIRYIEARLTSQDSEALLPAKPWYR 876
Query: 718 NFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAE 771
NF G++ G +F G + +D D + +TEL VG WT +KD +L+ +
Sbjct: 877 NFTGKVAATGPGKFTTFGRMKQVDADTVRVTELPVGMWTDRFKDQCYSLIESGQ 930
>gi|339906076|ref|YP_004732873.1| hypothetical protein WIV_gp090 [Wiseana iridescent virus]
gi|308051947|gb|ADO00434.1| hypothetical protein [Wiseana iridescent virus]
Length = 1135
Score = 278 bits (711), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 194/649 (29%), Positives = 318/649 (48%), Gaps = 98/649 (15%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K+ ++H+L D YIG ++ TN + + + L +IF E L NA
Sbjct: 13 YSIKNDIQHVLDCSDVYIGDTSSTLRKEYVWEGVTNKIVSKGVKTPEALIRIFVEALTNA 72
Query: 96 CDNKQR--DPKMNC--IKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTS 151
DN +R + M C IKI +N E+ S+WN+G+ IP++++K+++ + LL+
Sbjct: 73 VDNVERSKNTSMACKAIKINLNLESGLTSIWNDGQVIPIIQNKNQEGSSDEDL--QLLSK 130
Query: 152 SNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSC 211
++ + + + ++IFGHL +SSNY++EE + G+NG G K NIFSS F V
Sbjct: 131 ADKINLKKLNELYIHSLIFGHLRSSSNYSNEEVREVSGKNGVGVKCTNIFSSYFCVTGVD 190
Query: 212 SEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
E K Q WK+NM+ + P I K S +T++ + PD +F ++ ++ + +
Sbjct: 191 PENKLKLIQEWKNNMTTSSGPVISKCSSSRGYTEVKYIPDFKRFNLSKYPLEVSSIFKKL 250
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAP 330
A D ++ ++ ++ NGEKL +KN + Y +LY DE + + I Y+ EV +
Sbjct: 251 AIDVSSLLPEINIYFNGEKLGIKNLKVYSQLYYP-DDERYNSLTIKYKGS----EVVVVG 305
Query: 331 SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNV 390
S+ G +SFVN T GG+HV + + Q++E N
Sbjct: 306 SEIGLPPISFVNGQITKDGGQHVQSWTKTVFTQLLE-------------------SLNKS 346
Query: 391 KNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQ------------ 438
K +K+++ K + + FI+ + P FD Q
Sbjct: 347 KGDKIKLTKG----------------DISPYFQFFIHSRVNKPKFDGQNKNVLKNPKVES 390
Query: 439 -------------------------TKENMTLQKGSFGST---CVPKLEDANDAGTKNSI 470
+KE + L+K G++ +PK+ D D +
Sbjct: 391 SLEKSQLTKILKWPVITIIKEKVLRSKELLALKKIELGTSKRKIIPKV-DGYDPANTLGV 449
Query: 471 DCTLILTEGDSAKSLAVSGL-----GVVGRDKYGVFPLRGKLLNVREATHKQILENAEIN 525
+ LI+ EG SAKS AV+G+ G GR+ +G+ PLRGK LNV+ + ++ N +N
Sbjct: 450 ESILIVCEGLSAKSYAVAGIQTGIFGKKGRNHFGILPLRGKFLNVKNVSLTKVGANKVVN 509
Query: 526 NLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP 585
+L+K+ L+++ Y+ ++ KTL YG L+I+TD D+DG HIKGLI+NF+H +PTL++L
Sbjct: 510 DLIKVFNLKFNLDYSLPQNYKTLNYGTLLILTDADKDGIHIKGLILNFLHELFPTLIKLK 569
Query: 586 -FLEEFITPIIKA--TKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
F+ TPI+K K +++L FY FE + E + KYYK
Sbjct: 570 GFVISMETPIVKIFQKKGKDDLLFYDENTFERLRSEEGKILNF--KYYK 616
Score = 91.3 bits (225), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 75/123 (60%), Gaps = 6/123 (4%)
Query: 651 DSISMFIGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGE-DP 709
D I F EP ++P++P++L+NG+ GIGTGW IP +NP E++D + GE P
Sbjct: 827 DPILTFTPEGEPTTFVPVVPLILINGSIGIGTGWSCFIPQYNPLELIDITISKLMGEFSP 886
Query: 710 LPMK---PWYKNFKGEI--DYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLD 764
+ ++ P+Y+NFKG+I + +F G++ +D+ +++TEL +G WT +KD
Sbjct: 887 IQLENLNPYYRNFKGKIKENTSEKLKFTTYGKMKRIDERTIQVTELPIGMWTDKFKDYCY 946
Query: 765 TLL 767
+L+
Sbjct: 947 SLI 949
>gi|431809358|ref|YP_007236254.1| DNA topoisomerase [Salmonella phage SKML-39]
gi|408387497|gb|AFU64502.1| DNA topoisomerase [Salmonella phage SKML-39]
Length = 637
Score = 277 bits (709), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 202/642 (31%), Positives = 302/642 (47%), Gaps = 136/642 (21%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERRE-ITYVPGLY 85
++K+ +E+ Y+K + +EHILLRP+ ++GS+ T+W+ + + + R+ Y P L
Sbjct: 2 SDKIDIERKYKKLTHVEHILLRPERHLGSIRSSVGTVWVYDPTKDQVIFRDNFEYSPALI 61
Query: 86 KIFDEILVNACDNKQ--RDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTM 143
K FDEI+ N D+ + + I +TV+ I V +NG GIPVV+H ++P M
Sbjct: 62 KQFDEIITNCVDHSKTPEGKSLTEITVTVSPMNGQIIVADNG-GIPVVKHGVTNEWLPEM 120
Query: 144 IFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSS 203
+FG L SN+NDE+++ YN+++ +GG+NG GA L N+FS
Sbjct: 121 LFGSLYAGSNFNDEDEE------------------YNNQK---SGGQNGEGASLVNVFSK 159
Query: 204 KFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDM 263
F V T S+ KKS+ Q+++DNMSK ++P I + K+ T I + PD + + LD++
Sbjct: 160 WFRVAT--SDGKKSYAQLFEDNMSKKSNPVISNTPKEFGTTIAWIPDYARLGVKGLDQNN 217
Query: 264 VDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY--TDRQDEDGDPVKIIYENVN 321
+ +I RRA++ AA +KV LNG+++ + F +V + DE G+
Sbjct: 218 LLMIYRRAFEVAACNPRLKVVLNGKQIRIDRFGHFVDYFHAGSAVDESGE---------- 267
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
W VA+APS F S+VNSIAT GG HVD V D IV I + KK K
Sbjct: 268 --WSVAVAPSSGTFMHASYVNSIATHIGGPHVDYVADQIVAAIRPQLVKKFK-------- 317
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
LKP +KNH+ +FI I NP FDSQTKE
Sbjct: 318 -----------------------------TELKPAMIKNHMSLFIAADINNPRFDSQTKE 348
Query: 442 NMTLQKGSFGSTCVP-------------------------KLEDANDAGTKNSID----- 471
MT FG++ P + +DA K I
Sbjct: 349 RMTTPVSQFGTSYKPSDKLIRKALEFVTAGLSKELASLRNEQDDAEFEKAKKDISKRDYR 408
Query: 472 ----------------CTLILTEGDSAKSLAVSGLGVVGRD--KYGVFPLRGKLLNVREA 513
C+L+LTEGDSA + ++ RD K G+FPLRGK +N A
Sbjct: 409 EIEKYYPATARGDRSGCSLLLTEGDSASNPILN-----ARDTKKIGLFPLRGKFINCLNA 463
Query: 514 THKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINF 573
+++ N E NL I G + + RY + ++ TD D DG HI+GL+I
Sbjct: 464 PRTKVMNNEEFKNLCTIHG-----GAVPGQPLDISRYPQTVVATDADDDGIHIRGLLITL 518
Query: 574 IHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEW 615
WP +R L+ TP ++ + F + E+EE+
Sbjct: 519 YCTYWPEYVRQGRLKLLRTPYMRVWCGKVMHEFMNNAEYEEF 560
>gi|282599187|ref|YP_003358499.1| topoisomerase II large subunit [Shigella phage phiSboM-AG3]
gi|226973493|gb|ACO94246.1| topoisomerase II large subunit [Shigella phage phiSboM-AG3]
Length = 637
Score = 276 bits (707), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 202/642 (31%), Positives = 302/642 (47%), Gaps = 136/642 (21%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERRE-ITYVPGLY 85
++K+ +E+ Y+K + +EHILLRP+ ++GS+ T+W+ + + + R+ Y P L
Sbjct: 2 SDKIDIERKYKKLTHVEHILLRPERHLGSIRSSVGTVWVYDPTKDQVIFRDNFEYSPALI 61
Query: 86 KIFDEILVNACDNKQ--RDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTM 143
K FDEI+ N D+ + + I +TV+ I V +NG GIPVV+H ++P M
Sbjct: 62 KQFDEIITNCVDHSKTPEGKSLTEITVTVSPMNGQIIVADNG-GIPVVKHGVTNEWLPEM 120
Query: 144 IFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSS 203
+FG L SN+NDE+++ YN+++ +GG+NG GA L N+FS
Sbjct: 121 LFGSLYAGSNFNDEDEE------------------YNNQK---SGGQNGEGASLVNVFSK 159
Query: 204 KFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDM 263
F V T S+ KKS+ Q+++DNMSK ++P I + K+ T I + PD + + LD++
Sbjct: 160 WFRVAT--SDGKKSYAQLFEDNMSKKSNPVISNTPKEFGTTIAWIPDYARLGVKGLDQNN 217
Query: 264 VDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY--TDRQDEDGDPVKIIYENVN 321
+ +I RRA++ AA +KV LNG+++ + F +V + DE G+
Sbjct: 218 LLMIYRRAFEVAACNPRLKVVLNGKQIRIDRFGHFVDYFHAGSAVDESGE---------- 267
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
W VA+APS F S+VNSIAT GG HVD V D IV I + KK K
Sbjct: 268 --WSVAVAPSSGTFMHASYVNSIATHIGGPHVDYVADQIVAAIRPQLVKKFK-------- 317
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
LKP +KNH+ +FI I NP FDSQTKE
Sbjct: 318 -----------------------------TELKPAVIKNHMSLFIAADINNPRFDSQTKE 348
Query: 442 NMTLQKGSFGSTCVP-------------------------KLEDANDAGTKNSID----- 471
MT FG++ P + +DA K I
Sbjct: 349 RMTTPVSQFGTSYKPSDKLIRKALEFVMAGLSKELASLRNEQDDAEFEKAKKDISKRDYR 408
Query: 472 ----------------CTLILTEGDSAKSLAVSGLGVVGRD--KYGVFPLRGKLLNVREA 513
C+L+LTEGDSA + ++ RD K G+FPLRGK +N A
Sbjct: 409 EIEKYYPATARGDRSGCSLLLTEGDSASNPILN-----ARDTKKIGLFPLRGKFINCLNA 463
Query: 514 THKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINF 573
+++ N E NL I G + + RY + ++ TD D DG HI+GL+I
Sbjct: 464 PRTKVMNNEEFKNLCTIHG-----GAVPGQPLDISRYPQTVVATDADDDGIHIRGLLITL 518
Query: 574 IHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEW 615
WP +R L+ TP ++ + F + E+EE+
Sbjct: 519 YCTYWPEYVRQGRLKLLRTPYMRVWCGKVMHEFMNNAEYEEF 560
>gi|448825356|ref|YP_007418287.1| DNA topoisomerase 2 [Megavirus lba]
gi|444236541|gb|AGD92311.1| DNA topoisomerase 2 [Megavirus lba]
Length = 1072
Score = 276 bits (706), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 170/445 (38%), Positives = 233/445 (52%), Gaps = 94/445 (21%)
Query: 238 SKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQD 297
SK +TKI+F PD KF + L D+V L +R YD A +T + KV+ N + + NF
Sbjct: 14 SKTPYTKISFIPDFKKFGLKGLTNDIVALFKKRVYDLAMTT-NAKVYFNEKIISQNNFTK 72
Query: 298 YVKLYTDRQDEDGDPVKIIYENVNPRWEVAIA--PSDR-GFQQVSFVNSIATTKGGRHVD 354
Y+ LY E + K++ + RW+V P+D+ Q +SFVNSI T++GG HVD
Sbjct: 73 YIDLYFP---EGSEHKKVLDVTTHDRWKVCAVYDPTDQLEHQNISFVNSICTSRGGTHVD 129
Query: 355 AVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALK 414
VV+ +VK + E V KK K G+ +K
Sbjct: 130 QVVNQVVKDLKEAVAKKVK------------------------------------GLQVK 153
Query: 415 PFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTCV------------------- 455
P +K ++ F++ IVNP FD+QTKE +T + +FGS
Sbjct: 154 PTMIKENLIFFVDATIVNPDFDTQTKEYLTTKPANFGSNFTVTDIFIKKVIKTGVVSQII 213
Query: 456 ------------------------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLG 491
KL +A+ AGTK CTLILTEGDSAK+ A+SGL
Sbjct: 214 ANAQAKAEASLSKTDGKGRGAIRYEKLYNAHKAGTKEGYKCTLILTEGDSAKTFAMSGLN 273
Query: 492 VVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYG 551
V+GRD YGVFPL+GK LNVR + +I EN EI + KI+GL+ K Y D+K LRYG
Sbjct: 274 VIGRDYYGVFPLKGKPLNVRTKSPLKIAENEEITAIKKIIGLEQGKVYN---DLKELRYG 330
Query: 552 RLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKA----REELSF 606
+MI+ DQD DG HIKGLI+N IH WP+L + F++ F TP++KATK R+ + F
Sbjct: 331 SIMILADQDVDGYHIKGLIMNLIHRFWPSLAKYEGFIQSFATPLLKATKGKGKTRKVVEF 390
Query: 607 YSLPEFEEWKEETTNWHTYKIKYYK 631
+ FEEWK++ + + IKYYK
Sbjct: 391 TNPQSFEEWKQKNNDGKGWTIKYYK 415
Score = 122 bits (306), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 88/143 (61%), Gaps = 16/143 (11%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP++Y P+IPM+LVNG EGIGTG+ TKI NPR+I DNI R++ E MKPWY++F
Sbjct: 666 IEPQYYAPVIPMILVNGTEGIGTGYSTKIAPCNPRDIYDNILRILNDEKTKTMKPWYRHF 725
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL-HGA-------- 770
G I+ ++++V + I+ +D + IT+L +G WT +YK LD L+ GA
Sbjct: 726 TGTIEKIDNNKYVSRAKYEIIGNDTIHITDLPIGTWTDNYKAFLDNLIDQGASQRAVDKK 785
Query: 771 ---EKDEVHPG----PGRKSHPR 786
EK+ V PG G K++ R
Sbjct: 786 AAKEKESVKPGVKGKAGSKTNSR 808
>gi|158295033|ref|XP_315969.4| AGAP005939-PA [Anopheles gambiae str. PEST]
gi|157015843|gb|EAA11364.4| AGAP005939-PA [Anopheles gambiae str. PEST]
Length = 1055
Score = 276 bits (705), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 167/452 (36%), Positives = 242/452 (53%), Gaps = 58/452 (12%)
Query: 1319 GGYMEAKKRKLEEQFELEANS--DSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELK 1376
G YM+AK KLE+QF + + + + +F GV+IFVNGYT PSA+ELK
Sbjct: 17 GDYMDAKIAKLEDQFRHSSANVGEKQSDLFAGVSIFVNGYTN-----------PSADELK 65
Query: 1377 ALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKK 1436
LMM+HGG++HHY+ TT+ IA+ LP K++ + + II P W+VD + GKLLD+ +
Sbjct: 66 RLMMMHGGVFHHYKRPNTTYTIATILPDVKVRSIT-SEIIISPRWVVDCLKEGKLLDYSR 124
Query: 1437 YLLYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSEAVNS 1496
YLLYT KP L F AP S++ T V + D + S++E +N
Sbjct: 125 YLLYT--QHKPSQPKLA---FSKLLAPSTSRT---TDITKPVVKNDGDPNDISRTECLNV 176
Query: 1497 EESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHL 1556
+N E + ++ +I ++ A++ +FL EF+N SRLHH+
Sbjct: 177 LGMLKNFSNMAPEPTVSFESEEQTKSCDIPVDTTPTKASLTATDPNFLTEFFNNSRLHHI 236
Query: 1557 STMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVI 1616
+T+G+ FKQYV ELREK G F + + + G + + + + N I
Sbjct: 237 ATLGAGFKQYVAELREKATGSFPARDTLVERLCPAGARDHPECDFSNESNAR------YI 290
Query: 1617 MHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKV--REGVDRQAEFDIYRQRTMNR- 1673
MHIDMDCFFVSVG+R +P L+ PVAV H +G+ ++V G +R E ++Y +R R
Sbjct: 291 MHIDMDCFFVSVGLRKYPHLRGLPVAVTHSRGSEARVPSHPGQNRALEIELYHKRLEERY 350
Query: 1674 -------------------------MGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEG 1708
R+ G+ NGMFVG ALK CP LK +PYDF+G
Sbjct: 351 KAPDIPIESRLAAIDEHNSLSEIASCSYEARQCGVKNGMFVGAALKLCPELKTIPYDFDG 410
Query: 1709 YKEVSYCLYNLIASLTLNIEAVSLYTNESFLN 1740
Y+EV++ LY+ IA TL+IEAVS +E F++
Sbjct: 411 YREVAHQLYDTIARYTLDIEAVS--CDEMFVD 440
Score = 263 bits (672), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 133/305 (43%), Positives = 182/305 (59%), Gaps = 43/305 (14%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEM+VD ++LLQ + ++F +Y+R I+ TGC CS G G+N+LQAR+ATK+
Sbjct: 429 IEAVSCDEMFVDLTELLQSTGVGVMEFVTYVRNEISTATGCDCSAGIGANRLQARMATKR 488
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKPNGQ+HL P + ++M IP+++LPGVG S +L + TC DLQ I LQ E
Sbjct: 489 AKPNGQYHLVPGAVEEYMKVIPIAELPGVGPSTSHRLRKMTYVTCADLQTIPKNVLQTEF 548
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
G K G TLY CRG D++ L ++ RKSVS +VNYGIRF QE+E F++QL E+ +RL
Sbjct: 549 GKKFGETLYNACRGIDERPLVYDRGRKSVSVDVNYGIRFSTEQEVERFMRQLTQEIHRRL 608
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVR 2138
E++ +GK +T+KL+VRS EAP E +KF+GHG+CD +TKS L
Sbjct: 609 VELRQRGKLVTVKLLVRSPEAPVETAKFMGHGLCDVVTKSQPL----------------- 651
Query: 2139 SAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQ 2198
R+ + G I VL ++ L + P ELRGIGIQ
Sbjct: 652 -----RQHTDDRG---------------------MIEGAVLGLMRMLAIAPSELRGIGIQ 685
Query: 2199 VSKLE 2203
+SK E
Sbjct: 686 ISKFE 690
Score = 49.7 bits (117), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 28/33 (84%)
Query: 1192 ASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
A++ +FL EF+N SRLHH++T+G+ FKQYV +L
Sbjct: 218 ATDPNFLTEFFNNSRLHHIATLGAGFKQYVAEL 250
>gi|157127741|ref|XP_001661158.1| terminal deoxycytidyl transferase rev1 [Aedes aegypti]
gi|108882332|gb|EAT46557.1| AAEL002250-PA [Aedes aegypti]
Length = 650
Score = 276 bits (705), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 203/362 (56%), Gaps = 46/362 (12%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEM+VD + L+ ++ + + F Y+R+ I + T C CS G G+N+LQAR+ATKK
Sbjct: 37 IEAVSCDEMFVDLTDLINDVGVDVMDFVGYIRDQIRESTECPCSAGVGANRLQARMATKK 96
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKPNGQ++L P+ + ++M +IP+SDLPG+G S ++L L TCGDLQ + + LQ E
Sbjct: 97 AKPNGQYYLAPETVLEYMRDIPISDLPGIGPSTTYRLKQLSWSTCGDLQFVPISVLQREF 156
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
G K G T+Y CRGEDD+ L ++ RKSVS +VNYGIRF+ E+E F+KQL E+ KRL
Sbjct: 157 GKKFGDTIYHACRGEDDRPLVYDQVRKSVSVDVNYGIRFKEEAEVERFMKQLTEEIHKRL 216
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVR 2138
E+K +GK IT+KL+VRS EAP E +KF+GHG+CD ITKS Y
Sbjct: 217 MEIKKRGKVITVKLLVRSPEAPVETAKFMGHGLCDIITKSHPFKDY-------------- 262
Query: 2139 SAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQ 2198
CD ++ M + Q + P ELRGIG+Q
Sbjct: 263 ---------------TCDLAVIEKAVLMLMKQ--------------IAAPPHELRGIGLQ 293
Query: 2199 VSKLEHQSKTL---ATIDTFFTNKGKPPDQLNNPRPGPSNSTITPGPSNSTLPPGPSNST 2255
+SK + + ++ ++ T F + +P + + + P P P S +T
Sbjct: 294 LSKFDEKKSSVDSKNSLKTMFEKAAAKQEATKPDQPVLTPTKVPPAPKTEITPKKKSLAT 353
Query: 2256 LP 2257
P
Sbjct: 354 TP 355
Score = 52.0 bits (123), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 17/158 (10%)
Query: 1738 FLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPSPSPILDM-- 1795
FL ALP ++RQEV + Q+ + N E H V TP SP+ +
Sbjct: 477 FLQALPPELRQEVERQIELQKDTMVITSNEPE--------FHEHLQV-TPESSPMKERPE 527
Query: 1796 --STSILDTTTSHILSSNVSLQ-EMRTMLREWMCES--QPEPSDIEMFSEYLSNLVEERH 1850
+T+ + + N+ L+ + RT+L W+ ES +PE D+ + + +LV +
Sbjct: 528 VGATTTPQKPPAPEVEENILLRSDWRTLLSAWV-ESGDEPEDEDVTIIAGNARDLVNGKR 586
Query: 1851 LNPIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAM 1888
L+ + + LRFL R + ++E+ W AY ++ VQ M
Sbjct: 587 LHELHLALRFLFRILDERENCRWHRAYVRIVEAVQVVM 624
>gi|18266788|sp|O61078.2|TOP2_LEICH RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
II
gi|6453822|gb|AAC05295.2| DNA topoisomerase II [Leishmania chagasi]
Length = 1236
Score = 275 bits (704), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 206/640 (32%), Positives = 307/640 (47%), Gaps = 84/640 (13%)
Query: 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFD 89
M+ Y+K + ++H+LLRP+ Y+GS+E M++ + E M + GL KI D
Sbjct: 1 MTYASKYKKLTPIDHVLLRPEMYVGSIETQPTPMYIFDPEKGRMVWETMRVNQGLLKIVD 60
Query: 90 EILVNACDN---KQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFG 146
EIL+NA DN + + I I ++ +T I+V N+G G+P+V ++ KM++P M+F
Sbjct: 61 EILLNAADNINNSKGSVRQTYISIHIS-DTGEITVENDGAGLPIVRSREHKMYIPEMVF- 118
Query: 147 HLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFV 206
GHLLTSSNYN++ T GR+GYGAKL NI S+KF
Sbjct: 119 ------------------------GHLLTSSNYNNDSTSTTAGRHGYGAKLTNILSTKFS 154
Query: 207 VETSCSEYKKSFKQVWKDNMSKVTSPEIK--SGSKDDFTKITFTPDLTKFKM--TSLDKD 262
V C + W D+M T+P + + T++ F PD F S+ D
Sbjct: 155 V--VCRTDGRESHMSWTDHMRMATAPRVNRVDPKEKSVTRVKFMPDYAHFGFPNASISLD 212
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
M ++ +R D AA ++V LN + F DY +LY+ D P +Y +
Sbjct: 213 MKRVLHKRIMDLAAMFSKIEVRLNNVPFGFRTFTDYARLYSLPGLDGSMPPEPFVY--TS 270
Query: 322 PRWEVAIAP--SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTI 379
P VA P + + V VN + T GG H +A +D I+ ++ + K K G
Sbjct: 271 PNGSVAYVPQLTQSPKRIVGVVNGVVTYNGGTHCNAAMD-ILDSCLDSLSKNFKKNGKV- 328
Query: 380 IMLFGNKFNNVKNNKLQMAKTLIDIGV------------RLGGMALKPFQVKNHIWIFIN 427
V N++Q T++ + RL P KN + ++
Sbjct: 329 ----------VDTNRVQRHFTVLVFLIQTQPKFDSQSKARLVSTVTMPRMPKNTLEKYLE 378
Query: 428 CL-----IVNPTFDSQTKE-NMTLQKGSFGS-----TCVPKLEDANDAGTKNSIDCTLIL 476
+ VN D E N + G S + + KL DA + TLI+
Sbjct: 379 RMPFLEAHVNSMDDQLANELNKEIGAGRRLSSKTLISAITKLVDATSSQPDGRNIRTLII 438
Query: 477 TEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYS 536
TEGDSAK+LA++ L + GVFPLRGKLLNVR K++ + +L LGL+
Sbjct: 439 TEGDSAKALALNSLSSEQKKYCGVFPLRGKLLNVRNKNLKRLKTCKGLQDLFLSLGLELG 498
Query: 537 KKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR--LPFLEEFITPI 594
K+Y + + LRY RL++MTDQD DGSHIKGL+IN WP LL+ ++ F TPI
Sbjct: 499 KEYRSPAE---LRYQRLLVMTDQDADGSHIKGLVINAFESLWPKLLQNNPGYISLFSTPI 555
Query: 595 IK---ATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+K + K++E ++F+S +F W+ + Y KYYK
Sbjct: 556 VKIKVSGKSKEVIAFHSFRDFHRWQRAHPSAR-YTAKYYK 594
Score = 70.9 bits (172), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLP----MKPW 715
+EP Y+PI+PM+L NGA GIG G+ T IP+ +P ++ ++ MI GE + PW
Sbjct: 806 VEPHHYVPILPMLLCNGAVGIGFGFATTIPSFHPLDVSAAVRAMINGESAKQVVRNLVPW 865
Query: 716 YKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTT 757
F+G + D+ F+ G+ + + I+E+ W T
Sbjct: 866 AVGFQGTVRRGPDNEFIAVGKYTAHPNGRFHISEI---PWMT 904
>gi|195586724|ref|XP_002083122.1| GD13564 [Drosophila simulans]
gi|194195131|gb|EDX08707.1| GD13564 [Drosophila simulans]
Length = 940
Score = 275 bits (702), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 170/454 (37%), Positives = 242/454 (53%), Gaps = 66/454 (14%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKAL 1378
GGY EAKK KLEEQF ++ + +F+G++IFVNG T PSA+ELK +
Sbjct: 13 GGYFEAKKSKLEEQFAAASDPFRKSDLFEGISIFVNGRTD-----------PSADELKRI 61
Query: 1379 MMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYL 1438
MM+HGG +HHYE S TT+IIAS LP K++ + K I +W+VD + K++D+K YL
Sbjct: 62 MMVHGGTFHHYERSHTTYIIASVLPDVKVRNMNLS-KFISAKWVVDCLEKKKIVDYKPYL 120
Query: 1439 LYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVS-DSVDNTEESKSEAVNSE 1497
LYT + K + SKS VE + + DS ++ + + +
Sbjct: 121 LYTNQKTSQPRLMFGKPKDNDAND---SKSDVEPPKDKAEMEVDSTNDETQMELGGILKH 177
Query: 1498 ESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLS 1557
++ A +P ++ ESK+ N+S +++ + A++ +FL EFY SRLHH++
Sbjct: 178 LHQAVATSP---EKEDSASESKI--TNLSTTSNNSTTARTAADPNFLSEFYKNSRLHHIA 232
Query: 1558 TMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIM 1617
T+G+ FKQYV LR+KH + G E L+ + N + +M
Sbjct: 233 TLGTGFKQYVCRLRQKHG--------------TQGFPNRETLK--YLANSQQNGLARYVM 276
Query: 1618 HIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSK----VREGVDRQAEFDIYRQRTMN- 1672
HIDMDCFFVSVG+R PEL+ P+AV H KG ++ V DR+AE +++ QR +
Sbjct: 277 HIDMDCFFVSVGLRARPELRGLPIAVTHSKGGNAATDVPVHPQADRKAELELFAQRFEHH 336
Query: 1673 ----------RMGLN--------------TREYGLGNGMFVGHALKKCPNLKIVPYDFEG 1708
R G + RE G+ NGMFVG ALK CP LK +PYDFEG
Sbjct: 337 FHDGDKAEKVRSGFDKKMSLSEIASCSYEAREKGIRNGMFVGQALKLCPELKTIPYDFEG 396
Query: 1709 YKEVSYCLYNLIASLTLNIEAVSLYTNESFLNAL 1742
YKEV++ LY+ +A TLNIEA L + L L
Sbjct: 397 YKEVAFTLYDTVAQYTLNIEAFLLDSKNDILAYL 430
Score = 164 bits (414), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 128/237 (54%), Gaps = 47/237 (19%)
Query: 1972 ISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCR 2031
I ++ + L LPGVG S+ KL G CGD+Q +L RL+ +G K G L+++CR
Sbjct: 426 ILAYLAPMSLDLLPGVGSSMSHKLKQAGLNNCGDVQKTTLWRLERVLGKKLGQNLFQNCR 485
Query: 2032 GEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLK 2091
G DD+ L +E RK+VSAE+N+GIRF N+ E E FL QL+ EV KRL E+K K + + LK
Sbjct: 486 GIDDRPLAYEQARKTVSAEMNFGIRFTNSAECEQFLCQLSDEVTKRLVEIKRKARSVNLK 545
Query: 2092 LMVRSAEAPREASKFLGHGVCDYITKSSSL--PIYERPLIITYFLLLVRSAEAPREASKF 2149
+MVR+AEAP E SK++GHGVCD I KSS + + +I T L L+R A+ P
Sbjct: 546 IMVRAAEAPVETSKYMGHGVCDTINKSSLIKHATDDVNVITTVVLNLMREADIP------ 599
Query: 2150 LGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSKLEHQS 2206
P ELRGIGI +++LE S
Sbjct: 600 ---------------------------------------PHELRGIGIHLTRLEDAS 617
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 34/47 (72%)
Query: 1178 NISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
N+S +++ + A++ +FL EFY SRLHH++T+G+ FKQYV +L
Sbjct: 199 NLSTTSNNSTTARTAADPNFLSEFYKNSRLHHIATLGTGFKQYVCRL 245
>gi|198463383|ref|XP_001352803.2| GA11465 [Drosophila pseudoobscura pseudoobscura]
gi|198151230|gb|EAL30303.2| GA11465 [Drosophila pseudoobscura pseudoobscura]
Length = 954
Score = 274 bits (701), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 179/467 (38%), Positives = 246/467 (52%), Gaps = 76/467 (16%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKAL 1378
GGY EAKK KLEEQF ++ + +FQG++IFVNG T PSA ELK +
Sbjct: 13 GGYFEAKKSKLEEQFAAASDPFRKSNLFQGISIFVNGLTN-----------PSANELKQI 61
Query: 1379 MMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYL 1438
MM+HGGIYHHYE T IIASNLP K++ + KII ++IVD + ++LD+K YL
Sbjct: 62 MMVHGGIYHHYERPHTKFIIASNLPDVKVRNMNTS-KIISAQYIVDCLENKRVLDYKPYL 120
Query: 1439 LYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSEAVNSEE 1498
LY T+ K L +NT ++ + V S E S E V ++
Sbjct: 121 LY--TNQKTTQPRLHFGKGKNT----------SRTNESMAVPKSETAAEPSLVEPVEADL 168
Query: 1499 SKSEAANPIESKQTVKTKESKLETVNISAPKPQA---SSTKNASNEDFLGEFYNKSRLHH 1555
S N + + Q V K ET +A + +S + A + FL EFY SRLHH
Sbjct: 169 S-----NILNNLQQVVATSPKNETAAKAAVEVSVISNNSARTAVDPAFLSEFYKNSRLHH 223
Query: 1556 LSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPV 1615
++T+G+ FKQYV ELR+ + G + + ++ L + ++ +
Sbjct: 224 IATLGAGFKQYVCELRQANGG--KPFPKRDELRSVLSCDQVMNMS---------AASVLY 272
Query: 1616 IMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSK----VREGVDRQAEFDIYRQRTM 1671
IMHIDMDCFFVSVG+R HPE + P+AV H KG ++ V DRQAE ++ +R
Sbjct: 273 IMHIDMDCFFVSVGLRSHPEWRGLPIAVTHSKGGNAATDVPVHPQADRQAELKLFAERFE 332
Query: 1672 NRMGLN-------------------------TREYGLGNGMFVGHALKKCPNLKIVPYDF 1706
+++ N R G+ NGMFVG ALK CP LK +PYDF
Sbjct: 333 HQLHDNIRADKVRSGFDKKMSLSEIASCSYEARAKGIRNGMFVGQALKLCPELKTIPYDF 392
Query: 1707 EGYKEVSYCLYNLIASLTLNIEAVSLYTNESF--LNALPEDIRQEVL 1751
EGYKEV++ LY+ +A TLNIEAVS +E F L L ED++ +V+
Sbjct: 393 EGYKEVAFALYDTVAQYTLNIEAVS--CDEMFVDLTDLVEDLQVDVM 437
Score = 251 bits (641), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 139/305 (45%), Positives = 183/305 (60%), Gaps = 44/305 (14%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEM+VD + L+++L + + F ++LRE + +TGC CS G G+NKL AR+ATK+
Sbjct: 413 IEAVSCDEMFVDLTDLVEDLQVDVMSFVAHLREEVRNKTGCPCSAGVGTNKLLARMATKR 472
Query: 1959 AKPNGQFHLTPQI-ISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNE 2017
AKP+GQ+ L P + +M L LPGVG SL KL G + C D+Q SL+ L++
Sbjct: 473 AKPDGQYLLGPGTDVLGYMAPTALETLPGVGSSLRHKLEQAGLRNCADVQRTSLQTLESV 532
Query: 2018 VGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKR 2077
VG K LTLY++CRG D + L +E +RK+VSAEVNYGIRF N E ETFL+QL+ EV R
Sbjct: 533 VGKKLALTLYENCRGIDTRPLVYEQKRKTVSAEVNYGIRFTNTTECETFLRQLSAEVTTR 592
Query: 2078 LEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLV 2137
L ++K K K I LK+MVR+AEAP EASKF+GHGVCD I KS I+T+
Sbjct: 593 LTDIKRKAKSIGLKVMVRAAEAPIEASKFMGHGVCDTINKS---------FILTH----- 638
Query: 2138 RSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGI 2197
A + + H + + K S LP P ELRGIGI
Sbjct: 639 ----ATDDVNVITSHVL--RLMKESGLP-----------------------PHELRGIGI 669
Query: 2198 QVSKL 2202
+SKL
Sbjct: 670 HLSKL 674
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 31/187 (16%)
Query: 1742 LPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPSPSPILDMSTS--- 1798
LPE IR+EVL+++ + +++R ++ ++ I ++ PS P ++ + S
Sbjct: 769 LPEYIRREVLENMD--EHLIARSSGHSDRTRKNPIGGRRSSMPCPPSSLPRIENNCSTFP 826
Query: 1799 ------------------ILDTTTSHILSSNVSLQEMRTMLREWMCESQ-PEPSDIEMFS 1839
+L+ +H+L SN ++ML +W+ Q P P+DI M +
Sbjct: 827 VPKDADGPLEVKPTTAALMLNGLQNHLLGSN-----YKSMLADWVSNEQYPNPTDILMIN 881
Query: 1840 EYLSNLVEERHLNPIVILLRFLRRHVGKKESTV--WAEAYQEMLSCVQSAMKHKPSSESK 1897
LS L + + + I +++ L R + KK V W AY+ + VQ + S K
Sbjct: 882 SKLSELAQSKQMGRIYDIMKHLCRLIKKKRDNVCEWHMAYKVIEESVQHQLMAIESYMLK 941
Query: 1898 IVSAVSC 1904
+ +SC
Sbjct: 942 LPDTISC 948
Score = 49.7 bits (117), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 1187 SSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQLISLQQDKQLP 1234
+S + A + FL EFY SRLHH++T+G+ FKQYV +L K P
Sbjct: 201 NSARTAVDPAFLSEFYKNSRLHHIATLGAGFKQYVCELRQANGGKPFP 248
>gi|194748493|ref|XP_001956680.1| GF24462 [Drosophila ananassae]
gi|190623962|gb|EDV39486.1| GF24462 [Drosophila ananassae]
Length = 991
Score = 273 bits (698), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 173/464 (37%), Positives = 242/464 (52%), Gaps = 85/464 (18%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKAL 1378
GGY EAKK KLEEQF ++ + +F G++IFVNG T PSA+ELK +
Sbjct: 13 GGYFEAKKSKLEEQFTAASDPFRKSNLFAGISIFVNGRTN-----------PSADELKRI 61
Query: 1379 MMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYL 1438
MM+HGG YHHYE TT IA+N+P K++ + K I +W+VD + K+LD+K YL
Sbjct: 62 MMVHGGTYHHYERPHTTFTIATNVPDVKVRNMNLS-KFISAQWVVDCLENEKILDYKPYL 120
Query: 1439 LYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSEAVNSEE 1498
LYT KS + S++ S + + +S + + E
Sbjct: 121 LYTNQKTSQPRLNFGKSKND--------------SNNDSKLEEPPLKKSDSNLDGILKEL 166
Query: 1499 SKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLST 1558
++ AA+P KE+K+ N+S + + +A + FL EFY SRLHH++T
Sbjct: 167 QQAVAASP--------EKEAKI--TNLSTTSNPSHNAMSAVDPGFLTEFYKNSRLHHIAT 216
Query: 1559 MGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMH 1618
+G+ FKQYV ELR+ +G + KT T+ + +MH
Sbjct: 217 LGAGFKQYVCELRQAQGS--KGFPKRQDLKTLTKSTQIGSVR--------------YVMH 260
Query: 1619 IDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSK----VREGVDRQAEFDIYRQRTMNRM 1674
IDMDCFFVSVG+R HPEL+ PVAV H KG S+ V DR+AE +++ QR + +
Sbjct: 261 IDMDCFFVSVGLRSHPELRGLPVAVTHSKGGSAATDVPVHPQADREAELELFAQRFEHHL 320
Query: 1675 GLN-------------------------TREYGLGNGMFVGHALKKCPNLKIVPYDFEGY 1709
N R+ G+ NGMFVG ALK CP LK +PYDFEGY
Sbjct: 321 HDNIKADKVRSGFDKKMSLSEIASCSYEARKKGIRNGMFVGQALKMCPELKTIPYDFEGY 380
Query: 1710 KEVSYCLYNLIASLTLNIEAVSLYTNESF--LNALPEDIRQEVL 1751
KEV++ LYN ++ TLNIEAVS +E F L L +D++ +V+
Sbjct: 381 KEVAFTLYNTVSQYTLNIEAVS--CDEMFVELTDLVDDLKVDVM 422
Score = 248 bits (633), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 134/306 (43%), Positives = 180/306 (58%), Gaps = 44/306 (14%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEM+V+ + L+ +L + + F YLR+ + +TGC CS G GSNKL AR+ATK+
Sbjct: 398 IEAVSCDEMFVELTDLVDDLKVDVMAFVGYLRQEVHAKTGCPCSAGVGSNKLLARMATKE 457
Query: 1959 AKPNGQFHLT-PQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNE 2017
AKPNGQ+ L Q + +M PL LPGVG S+ +KL+ +G +CGD+Q I+L++L++
Sbjct: 458 AKPNGQYLLDHDQDLLAYMAPTPLESLPGVGSSMSYKLSQVGLSSCGDVQKITLEKLESV 517
Query: 2018 VGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKR 2077
+G K TLY++C+G D + L +E QRK VSAE NYGIRF E+E FL+QL EV R
Sbjct: 518 LGKKQAQTLYQNCQGVDTRPLNYEQQRKQVSAEANYGIRFSKPIEVENFLRQLGAEVTTR 577
Query: 2078 LEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLV 2137
L + K + K I LK+MVR+AEAP E SKF+GHGVCD I KSS
Sbjct: 578 LIDAKRRTKSINLKVMVRAAEAPVETSKFMGHGVCDVINKSS------------------ 619
Query: 2138 RSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGI 2197
L H D + I VL ++ + + P ELRGIGI
Sbjct: 620 -----------ILKHSTDD--------------VNVITSHVLKLMREAHLPPNELRGIGI 654
Query: 2198 QVSKLE 2203
+SKLE
Sbjct: 655 HLSKLE 660
Score = 51.2 bits (121), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 1178 NISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQLISLQQDKQLPAIQ 1237
N+S + + +A + FL EFY SRLHH++T+G+ FKQYV +L Q K P Q
Sbjct: 182 NLSTTSNPSHNAMSAVDPGFLTEFYKNSRLHHIATLGAGFKQYVCELRQAQGSKGFPKRQ 241
>gi|195169786|ref|XP_002025696.1| GL20704 [Drosophila persimilis]
gi|194109189|gb|EDW31232.1| GL20704 [Drosophila persimilis]
Length = 811
Score = 273 bits (698), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 177/464 (38%), Positives = 249/464 (53%), Gaps = 70/464 (15%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKAL 1378
GGY EAKK KLEEQF ++ + +FQG++IFVNG T PSA ELK +
Sbjct: 13 GGYFEAKKSKLEEQFAAASDPFRKSNLFQGISIFVNGLTN-----------PSANELKQI 61
Query: 1379 MMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYL 1438
MM+HGGIYHHYE T IIASNLP K++ + KII ++IVD + ++LD+K YL
Sbjct: 62 MMVHGGIYHHYERPHTKFIIASNLPDVKVRNMNT-SKIISAQYIVDCLENKRVLDYKPYL 120
Query: 1439 LYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSEAVNSEE 1498
LY T+ K L +NT ++S+ S T+ V+ E S +N+ +
Sbjct: 121 LY--TNQKTTQPRLHFGKGKNTSR--TNESMAVPKSETAAEPRLVEPVEADLSNILNNLQ 176
Query: 1499 SKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLST 1558
++ A +P K + + V +S +S + A + FL EFY SRLHH++T
Sbjct: 177 -QAVATSP-------KNETAAKAAVEVSV--ISNNSARTAVDPAFLSEFYKNSRLHHIAT 226
Query: 1559 MGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMH 1618
+G+ FKQYV ELR+ + G + + ++ L + ++ + IMH
Sbjct: 227 LGAGFKQYVCELRQANGG--KPFPKRDELRSVLSCDQVMNMS---------AASVLYIMH 275
Query: 1619 IDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSK----VREGVDRQAEFDIYRQRTMNRM 1674
IDMDCFFVSVG+R HPE + P+AV H KG ++ V DRQAE ++ +R +++
Sbjct: 276 IDMDCFFVSVGLRSHPEWRGLPIAVTHSKGGNAATDVPVHPQADRQAELKLFAERFEHQL 335
Query: 1675 GLN-------------------------TREYGLGNGMFVGHALKKCPNLKIVPYDFEGY 1709
N R G+ NGMFVG ALK CP LK +PYDFEGY
Sbjct: 336 HDNIRADKVRSGFDKKMSLSEIASCSYEARAKGIRNGMFVGQALKLCPELKTIPYDFEGY 395
Query: 1710 KEVSYCLYNLIASLTLNIEAVSLYTNESF--LNALPEDIRQEVL 1751
KEV++ LY+ +A TLNIEAVS +E F L L ED++ +V+
Sbjct: 396 KEVAFALYDTVAQYTLNIEAVS--CDEMFVDLTDLVEDLQVDVM 437
Score = 114 bits (284), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 77/125 (61%), Gaps = 1/125 (0%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEM+VD + L+++L + + F ++LRE + +TGC CS G G+NKL AR+ATK+
Sbjct: 413 IEAVSCDEMFVDLTDLVEDLQVDVMSFVAHLREEVRNKTGCPCSAGVGTNKLLARMATKR 472
Query: 1959 AKPNGQFHLTPQI-ISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNE 2017
AKP+GQ+ L P + +M L LPGVG SL KL G + C D+Q R N
Sbjct: 473 AKPDGQYLLGPGTDVLGYMAPTALETLPGVGSSLRHKLEQAGLRNCADVQRTQTGRRLNR 532
Query: 2018 VGNKN 2022
KN
Sbjct: 533 WWVKN 537
Score = 49.7 bits (117), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 1187 SSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQLISLQQDKQLP 1234
+S + A + FL EFY SRLHH++T+G+ FKQYV +L K P
Sbjct: 201 NSARTAVDPAFLSEFYKNSRLHHIATLGAGFKQYVCELRQANGGKPFP 248
>gi|194864642|ref|XP_001971039.1| GG14732 [Drosophila erecta]
gi|190652822|gb|EDV50065.1| GG14732 [Drosophila erecta]
Length = 1009
Score = 272 bits (695), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 170/444 (38%), Positives = 237/444 (53%), Gaps = 66/444 (14%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKAL 1378
GGY EAKK KLEEQF ++ + +F+G++IFVNG T PSA+ELK +
Sbjct: 13 GGYFEAKKSKLEEQFAAASDPFRKSDLFEGISIFVNGRTD-----------PSADELKRI 61
Query: 1379 MMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYL 1438
MM+HGG +HHYE S TT+IIAS LP K++ + K I +W+VD ++ K++D+K YL
Sbjct: 62 MMVHGGTFHHYERSHTTYIIASVLPDVKVRNMNLS-KYISAKWVVDCLAKKKMVDYKPYL 120
Query: 1439 LYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSEAVNS-- 1496
LYT + K + SK V+ + VD++++ +
Sbjct: 121 LYTNQKTSQPKLIFGKPKDSSANE---SKLDVDVGAPKDKTPMEVDSSKDEMQMELGGIL 177
Query: 1497 EESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHL 1556
EE + A E + +V ESK+ N+S ++ + A++ +FL EFY SRLHH+
Sbjct: 178 EELQQAVATSPEKEASVS--ESKI--TNLSTTSSNSTVARTAADPNFLSEFYKNSRLHHI 233
Query: 1557 STMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVI 1616
+T+G+ FKQYV +LR H G + K T + L + + E +
Sbjct: 234 ATLGAGFKQYVCQLRLDH-----GSQGFPKRDTL------KSLARSLRNGS-----ERYV 277
Query: 1617 MHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSK----VREGVDRQAEFDIYRQRTMN 1672
MHIDMDCFFVSVG+R PEL+ P+AV H KG ++ V DR+AE +++ QR
Sbjct: 278 MHIDMDCFFVSVGLRTRPELRGLPIAVTHSKGGNAATDVPVHPQADRKAELELFAQRFEQ 337
Query: 1673 -----------RMGLN--------------TREYGLGNGMFVGHALKKCPNLKIVPYDFE 1707
R G + RE G+ NGMFVG ALK CP LK +PYDFE
Sbjct: 338 HAHDGEKAEKVRSGFDKKMSLSEIASCSYEAREKGIRNGMFVGQALKLCPELKTIPYDFE 397
Query: 1708 GYKEVSYCLYNLIASLTLNIEAVS 1731
GYKEV+ LY+ +A TLNIEAVS
Sbjct: 398 GYKEVATTLYDTVAQYTLNIEAVS 421
Score = 240 bits (613), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 131/310 (42%), Positives = 183/310 (59%), Gaps = 44/310 (14%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEM+V+ + L+ EL + + F S+LR+ + +TGC+CS G NKL AR+ATK+
Sbjct: 417 IEAVSCDEMFVELTDLVCELDVDVMAFVSHLRQEVRAKTGCSCSAGVAGNKLLARMATKE 476
Query: 1959 AKPNGQFHL-TPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNE 2017
AKPNGQF L + + I +M +PL LPGVG S+ KL G CGD+QN +L++L+
Sbjct: 477 AKPNGQFLLDSKKDILAYMAPMPLELLPGVGSSMSHKLKLAGLNNCGDVQNSTLEKLETV 536
Query: 2018 VGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKR 2077
+G K G L+++C+G DD+ L +E RK+VSAE+N+GIRF + + E FL+QL+ EV KR
Sbjct: 537 LGKKLGQNLFQNCKGIDDRPLAYEQTRKTVSAEMNFGIRFTKSAKCEQFLRQLSEEVTKR 596
Query: 2078 LEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLV 2137
L E+K K + I LK+MVR+AEAP E SK++GHGVCD I KSS
Sbjct: 597 LVEIKRKARSINLKVMVRAAEAPVETSKYMGHGVCDIINKSS------------------ 638
Query: 2138 RSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGI 2197
+ H D + I VL ++ + P ELRGIGI
Sbjct: 639 -----------LIKHATDD--------------VNVITSVVLNLMKDADLPPHELRGIGI 673
Query: 2198 QVSKLEHQSK 2207
++KLE S+
Sbjct: 674 HLTKLEDASE 683
Score = 54.3 bits (129), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%)
Query: 1178 NISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
N+S ++ + A++ +FL EFY SRLHH++T+G+ FKQYV QL
Sbjct: 201 NLSTTSSNSTVARTAADPNFLSEFYKNSRLHHIATLGAGFKQYVCQL 247
>gi|195428662|ref|XP_002062388.1| GK17515 [Drosophila willistoni]
gi|194158473|gb|EDW73374.1| GK17515 [Drosophila willistoni]
Length = 1022
Score = 271 bits (693), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 171/447 (38%), Positives = 242/447 (54%), Gaps = 72/447 (16%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKAL 1378
GGY EAKK KLEEQF ++ + +F G++IFVNG T PSA+ELK +
Sbjct: 11 GGYFEAKKSKLEEQFAAASDPFRKSNLFAGISIFVNGRTD-----------PSADELKRI 59
Query: 1379 MMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYL 1438
MM+HGGIYHHYE S T IIASNLP K++ + KII +W+VD ++ ++LD+K YL
Sbjct: 60 MMVHGGIYHHYERSHTNFIIASNLPDVKVRNMD-TTKIISAQWVVDCVAKSRVLDYKPYL 118
Query: 1439 LYTGTDA-KP---LTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSEAV 1494
LYT +P K K+ ++ + + V + +V V+ EE +
Sbjct: 119 LYTNQKTTQPRLNFGKGKDKAKHDDEDPKPIPECPVSVPDNLPSVP--VEKVEEDLGGIL 176
Query: 1495 NSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLH 1554
+ + +P K+++ TK + L +I+ P A + FLGEFY SRLH
Sbjct: 177 KELQQAAAVVSP--QKESLATKINNLSATSINQP------ALTAVDPAFLGEFYKNSRLH 228
Query: 1555 HLSTMGSMFKQYVNELREKH-DGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPE 1613
H++T+G+ FK++V LR+ H D F +R ++L ++ S N
Sbjct: 229 HIATLGAGFKEHVCTLRKTHGDKPFPKRAELR---STLQCKQE------ISSNR------ 273
Query: 1614 PVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSK----VREGVDRQAEFDIYRQR 1669
+MHIDMDCFFVSVG+R HPEL+ +PVAV H KG ++ V DRQAE +++ QR
Sbjct: 274 -YVMHIDMDCFFVSVGLRLHPELRGQPVAVTHSKGGNAATDVPVHPQADRQAEQELFAQR 332
Query: 1670 TMN-----------------RMGLN--------TREYGLGNGMFVGHALKKCPNLKIVPY 1704
+ +M L+ R G+ NGMFVG AL+ CP LK +PY
Sbjct: 333 FEHLLHDNIRADKVRTGFEKKMSLSEIASCSYEARAKGIRNGMFVGRALELCPELKTIPY 392
Query: 1705 DFEGYKEVSYCLYNLIASLTLNIEAVS 1731
DF+GY+EV+ LY+ +A TLNIEAVS
Sbjct: 393 DFDGYREVANALYDTVAQYTLNIEAVS 419
Score = 244 bits (622), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 135/306 (44%), Positives = 181/306 (59%), Gaps = 44/306 (14%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEM+V+ + L+ EL + ++F +LRE + +TGC CS G G+NKL +R+ATK+
Sbjct: 415 IEAVSCDEMFVELTDLVSELQVDVMEFVGHLREEVRSKTGCPCSAGVGANKLLSRMATKE 474
Query: 1959 AKPNGQFHLTPQ-IISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNE 2017
AKPNGQF L P I +M L LPGVG S+ KL G CGD+Q IS+++L+
Sbjct: 475 AKPNGQFLLNPDGDILSYMAPTALESLPGVGSSISHKLKQAGLNNCGDVQKISVEQLETV 534
Query: 2018 VGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKR 2077
+G K TL+++CRG D + L +E QRKS+SAEVNYGIRF E E FL+QL+ EV R
Sbjct: 535 LGKKMAQTLHQNCRGIDPRPLAYEQQRKSLSAEVNYGIRFTKTSECEKFLRQLSIEVHTR 594
Query: 2078 LEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLV 2137
L+EVK K ITLKLMVR+AEAP E SKF+GHGVCD TKS+ L+
Sbjct: 595 LKEVKRTTKSITLKLMVRAAEAPIETSKFMGHGVCDVWTKSA----------------LL 638
Query: 2138 RSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGI 2197
R+ A + I +VL ++ + + ELRG+GI
Sbjct: 639 RTGTA---------------------------DVNIITDQVLSLLKQSNLPSNELRGVGI 671
Query: 2198 QVSKLE 2203
++KLE
Sbjct: 672 HLNKLE 677
Score = 52.0 bits (123), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 14/88 (15%)
Query: 1161 KEEESTQTVQVELREGVNISAPKPQASSTK--------------NASNEDFLGEFYNKSR 1206
K EE + EL++ + +P+ ++ +TK A + FLGEFY SR
Sbjct: 167 KVEEDLGGILKELQQAAAVVSPQKESLATKINNLSATSINQPALTAVDPAFLGEFYKNSR 226
Query: 1207 LHHLSTMGSMFKQYVNQLISLQQDKQLP 1234
LHH++T+G+ FK++V L DK P
Sbjct: 227 LHHIATLGAGFKEHVCTLRKTHGDKPFP 254
>gi|405964014|gb|EKC29540.1| DNA repair protein REV1 [Crassostrea gigas]
Length = 1295
Score = 270 bits (689), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 147/364 (40%), Positives = 210/364 (57%), Gaps = 56/364 (15%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEM VDC+ LL P QFA+ LR I ++TGCT S G G N L A++ATKK
Sbjct: 520 IEAVSCDEMLVDCTDLLAATGADPGQFAALLRRQIHQKTGCTASAGMGGNVLLAKMATKK 579
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKPNGQF+L + DFM + + ++PGVG S+ KL +G TCG LQ I LQ E
Sbjct: 580 AKPNGQFYLKGDDVMDFMKDQSVQNIPGVGWSMNRKLKLMGVTTCGQLQEIPQSTLQKEF 639
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
G K GL+LY+ CRG+DD+++ +RKSVSAEVNYGIRF++ E + F++ L+ EV RL
Sbjct: 640 GPKTGLSLYRGCRGQDDRQIKTNQERKSVSAEVNYGIRFKSKMEADKFIRDLSEEVHNRL 699
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVR 2138
++ MKG+ +TLKLMVR +AP E +KF+GHG+C+ I+KSS L
Sbjct: 700 HDIGMKGRTVTLKLMVRREDAPLETAKFMGHGICNNISKSSML----------------- 742
Query: 2139 SAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQ 2198
P+ A+ I +E + I+N L+++ +LRGIGIQ
Sbjct: 743 --------------------------PLATDDANLIYQECMTILNGLRLNCSDLRGIGIQ 776
Query: 2199 VSKLE-------HQSKTLATIDTFFTNKGKPPDQLNNPRPGPSNSTITPGPSNSTLPPGP 2251
V KLE HQ K+ + ++ FT K +++ + P ++++ P N+T+
Sbjct: 777 VQKLESAIVGGSHQKKSQSILN--FTTSTK----ISSTKASPHKASVSETPQNNTIIKPA 830
Query: 2252 SNST 2255
++ST
Sbjct: 831 TSST 834
Score = 152 bits (384), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 146/298 (48%), Gaps = 38/298 (12%)
Query: 1471 ETSSHTSTVSDSVDNTEESKSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKP 1530
ET + + DS+ N + EA S + +A V+T ++ + + +P P
Sbjct: 228 ETGQKQAILDDSLTNVSLDEIEASTSCTLNNRSAALPSVSLKVRTDANESVSNAMKSPSP 287
Query: 1531 QASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEA-IRKWKT 1589
+ A + +L EFYN SRLHHLST S +++YV++ + K F G +A I+
Sbjct: 288 NSKPHGRAGDPHYLSEFYNNSRLHHLSTWKSEWREYVSK-KSKEMTSFPGRQALIKIVDE 346
Query: 1590 SLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGN 1649
E D++ S + ++PE VIMH+DMDCFFVSVG+R P+L +PVAV H KG
Sbjct: 347 HAADLESRDMDYGGSMAAASAKPERVIMHVDMDCFFVSVGLRKRPDLIGKPVAVTHSKGQ 406
Query: 1650 SSK-----------------------------------VREGVDRQAEFDIYRQRT-MNR 1673
K EG R+ D + + +
Sbjct: 407 GKKGPVPGSDIEYEQRMWSIKKNKNTATNPDQRSDPDPSVEGFGRKGNLDSFSSMSEIAS 466
Query: 1674 MGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
R+ G+ NGMF+G A K CP+L+ +PYDF+GY+EVS LY+ + S T +IEAVS
Sbjct: 467 CSYEARQAGVKNGMFMGPAKKLCPDLQTIPYDFDGYQEVSQILYDTVLSFTHDIEAVS 524
Score = 112 bits (280), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 88/147 (59%), Gaps = 22/147 (14%)
Query: 1306 SEPKTTAPKKKKK---------GGYMEAKKRKLEEQFELEANSDSRGGIFQGVAIFVNGY 1356
S+ K P+KKK+ GGYM AKK+KL +QF + + IF G+ I V+GY
Sbjct: 2 SDSKKNQPEKKKRAQDDGWEERGGYMAAKKQKLYDQF-TDGGRTLKSNIFHGIVIHVDGY 60
Query: 1357 TKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSR-TTHIIASNLPHTKIKKLKPGDK 1415
TK PS++ELK +M HGG Y H+ R THIIA++LP++KI K K
Sbjct: 61 TK-----------PSSDELKKIMHQHGGHYEHFLYKRKVTHIIATSLPNSKITKGLKHCK 109
Query: 1416 IIKPEWIVDSISAGKLLDHKKYLLYTG 1442
++KPEWI +S++AG+LL + Y LYTG
Sbjct: 110 VVKPEWITESVAAGRLLSYIPYQLYTG 136
Score = 54.3 bits (129), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 1808 LSSNVSLQEMRTMLREWM-CESQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L V++ E+R++L+EW+ +PE D E+ + YL NL+ +++L + ++++FL+RH+
Sbjct: 1203 LCGAVTIAEVRSLLKEWIQSSPEPEEDDEEVVTSYLQNLIMDKNLEQVDLVIKFLKRHIQ 1262
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKIV 1899
+ ++ W +++++++ VQS MK +E KI
Sbjct: 1263 RIANSNWETSFEKIVTDVQSFMKTHHGAELKIC 1295
Score = 45.4 bits (106), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 1169 VQVELREGVN--ISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQ 1223
V+ + E V+ + +P P + A + +L EFYN SRLHHLST S +++YV++
Sbjct: 270 VRTDANESVSNAMKSPSPNSKPHGRAGDPHYLSEFYNNSRLHHLSTWKSEWREYVSK 326
>gi|312385486|gb|EFR29972.1| hypothetical protein AND_00718 [Anopheles darlingi]
Length = 828
Score = 270 bits (689), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 178/501 (35%), Positives = 260/501 (51%), Gaps = 103/501 (20%)
Query: 1318 KGGYMEAKKRKLEEQFELEAN--SDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEEL 1375
+G YM+AK KLE+QF A ++ +F G++IFVNGYT PSA+EL
Sbjct: 62 QGDYMDAKIAKLEDQFRHTAANVAEPLSNLFAGISIFVNGYTD-----------PSADEL 110
Query: 1376 KALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHK 1435
K +MM +GG++HHY+ TT+ IAS LP K++ + + II P W+VD + AG++LD+
Sbjct: 111 KRIMMQNGGVFHHYKRPTTTYTIASILPDVKVRAIT-SETIISPRWVVDCLKAGRILDYS 169
Query: 1436 KYLLYTGTDAKPLTKLLQKSYFENTEAPCCSKSL-VETSSHTSTVSDSVDNTEESKSEAV 1494
+YLLYT KP L + +++A + +T T+ D T+ S++E +
Sbjct: 170 RYLLYT--QHKPSQPKLAFAAGTSSKARSTLPARPTDTDVAKPTLKRDNDPTDISRAECL 227
Query: 1495 N----------------SEESKSEAANPIESK--------QTVKTKESKLETVN------ 1524
N ++S+ + NP ++ T T E + ETV+
Sbjct: 228 NVLGLLKHFTDPEPSAAQDDSEEQVQNPQAARVSNNAVSPATEDTTEPQAETVSPDVFQE 287
Query: 1525 --------ISAPKPQASSTKN---ASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREK 1573
++ P +S+K A++ +FL EF+N SRLHH++T+G+ FK YV ELREK
Sbjct: 288 PSSAKNETMTTPTKAPASSKQSLTATDPNFLTEFFNNSRLHHIATLGAGFKAYVAELREK 347
Query: 1574 HDGVFRG----IEAIRKWKTSLGITEDEDLEETFSDN-PSPSEPEPVIMHIDMDCFFVSV 1628
F +E++ + ED D + DN P P IMHIDMDCFFVSV
Sbjct: 348 SSRTFPARALLVESLPRH------LEDRD---SLGDNLPHLGVPARYIMHIDMDCFFVSV 398
Query: 1629 GIRHHPELQDEPVAVAHGKGNSSKV---REGVDRQAEFDIYRQRTMNR------------ 1673
G+R +P L+ PVAV H +G+ ++V G +R E ++Y +R R
Sbjct: 399 GLRKYPHLRGLPVAVTHSRGSEARVVPTHPGQNRALEIELYHKRLTERNKAPDIPIESRL 458
Query: 1674 --------------MGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNL 1719
R G+ NGMFVG ALK CP+LK +PYDFEGY+EV+Y LY+
Sbjct: 459 SGIDEHNSLSEIASCSYEARRMGVKNGMFVGAALKLCPDLKTIPYDFEGYREVAYRLYDT 518
Query: 1720 IASLTLNIEAVSLYTNESFLN 1740
IA TL+IEAVS +E F++
Sbjct: 519 IAQYTLDIEAVS--CDEMFVD 537
Score = 257 bits (657), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 131/306 (42%), Positives = 179/306 (58%), Gaps = 47/306 (15%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEM+VD ++LLQ ++ F ++R+ I+ ETGC CS G GSN+LQAR+ATK+
Sbjct: 526 IEAVSCDEMFVDLTELLQSTGVSMTDFVRFVRDEISTETGCPCSAGIGSNRLQARMATKR 585
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKP+GQF L P + +M +IP+ DLPGVG S +L + TC DLQ I LQ E
Sbjct: 586 AKPDGQFWLAPSDVESYMRDIPIGDLPGVGPSTTQRLKQMTYTTCADLQTIPRNVLQTEF 645
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
G K G TLY CRG D++ L ++ RKSVS +VNYGIRF QE++ F++QL E+ +RL
Sbjct: 646 GKKFGETLYNACRGIDERPLVYDKGRKSVSVDVNYGIRFTTEQEVDRFMRQLTEEIHRRL 705
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIY--ERPLIITYFLLL 2136
E++ +GK +T+KL+VR+ EAP E +KF+GHG+CD +TKS L + +R +I L L
Sbjct: 706 MELRQRGKLVTVKLLVRAPEAPVETAKFMGHGLCDVVTKSQPLAKHTDDRSVIEAAVLSL 765
Query: 2137 VRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIG 2196
+R+ P P ELRGIG
Sbjct: 766 MRTMAVP---------------------------------------------PHELRGIG 780
Query: 2197 IQVSKL 2202
IQ+SK
Sbjct: 781 IQISKF 786
Score = 48.1 bits (113), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 1178 NISAPKPQASSTKN---ASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQLISLQQDKQLP 1234
++ P +S+K A++ +FL EF+N SRLHH++T+G+ FK YV +L + + P
Sbjct: 295 TMTTPTKAPASSKQSLTATDPNFLTEFFNNSRLHHIATLGAGFKAYVAELRE-KSSRTFP 353
Query: 1235 AIQVISIRSPR 1245
A ++ PR
Sbjct: 354 ARALLVESLPR 364
>gi|91085297|ref|XP_968294.1| PREDICTED: similar to terminal deoxycytidyl transferase rev1
[Tribolium castaneum]
gi|270008440|gb|EFA04888.1| hypothetical protein TcasGA2_TC014950 [Tribolium castaneum]
Length = 825
Score = 269 bits (688), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 141/323 (43%), Positives = 196/323 (60%), Gaps = 43/323 (13%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEMYV+ S LL+ L+ +A+++R+ I TGC CSTGFGSN+LQARLATKK
Sbjct: 336 IEAVSCDEMYVEVSDLLKSYDLSVEDWANHIRDEIKTATGCPCSTGFGSNRLQARLATKK 395
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKP+G ++L P+ + ++ I L+DLPGVG++ L KL SLG +TCGD+Q SL LQ E+
Sbjct: 396 AKPDGSYYLKPEDVESYLAEIALADLPGVGYATLSKLKSLGLETCGDVQVASLGVLQREL 455
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
G K G TL + +G D K L + H+RKSVSAE+NYGIRF+ E FL+ L EV RL
Sbjct: 456 GAKMGETLLEQAKGIDRKPLNYTHERKSVSAEINYGIRFKTINECYNFLESLGNEVWSRL 515
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVR 2138
E+KM+ K +TLKLM+R+A+AP E +KFLGHG+CD ++KS +
Sbjct: 516 NEIKMRAKTVTLKLMIRAADAPLETAKFLGHGLCDSVSKSQT------------------ 557
Query: 2139 SAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQ 2198
L H +IS + +EV + +K+ V+ ELRG+G+Q
Sbjct: 558 -----------LAH--------------HISDVKILHREVRTLYDKMNVNYAELRGLGVQ 592
Query: 2199 VSKLEHQSKTLATIDTFFTNKGK 2221
++KLE + T+ F + K
Sbjct: 593 LTKLEKLAPINPTLSNFLQQESK 615
Score = 151 bits (381), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 121/212 (57%), Gaps = 33/212 (15%)
Query: 1535 TKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGIT 1594
K AS+ FL EFY+ SRLH +ST+G+ +KQ++++LREK F G + + +
Sbjct: 147 AKTASDPHFLEEFYSNSRLHLISTLGAEYKQFISDLREKPRD-FPGRVKLSHVPKTGAVP 205
Query: 1595 EDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKG---NSS 1651
+ PV+MHIDMDCFFVSVG+R PEL+ PVAV H + N +
Sbjct: 206 QT-----------------PVVMHIDMDCFFVSVGLRTRPELRGLPVAVTHARRAQLNPN 248
Query: 1652 KVRE-----GVDRQAEFDIYR----QRTMNRMG---LNTREYGLGNGMFVGHALKKCPNL 1699
K RE +DR E R + +M+ + R+ G+ NGMF+G A K CP +
Sbjct: 249 KEREETVTLNMDRMPEGVELRMIDGRSSMSEVASCSYEARKCGVKNGMFLGAAAKLCPQI 308
Query: 1700 KIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
K +PYDFEGYKEVS LY +AS TLNIEAVS
Sbjct: 309 KTIPYDFEGYKEVSMVLYKTLASYTLNIEAVS 340
Score = 122 bits (307), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 83/129 (64%), Gaps = 22/129 (17%)
Query: 1319 GGYMEAKKRKLEEQF------ELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
GGYMEAKK KL EQ+ E+E SD IF GV+I VNG T PS+
Sbjct: 20 GGYMEAKKAKLREQYKETTAKEVEKLSD----IFTGVSILVNGLTN-----------PSS 64
Query: 1373 EELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL 1432
++LK LM HGG +H Y+SS TTHIIASNLP+ KI KL I+KP WI DSI+ KLL
Sbjct: 65 DQLKLLMAQHGGTFHLYQSSTTTHIIASNLPNVKINKLG-SVPIVKPSWITDSIALNKLL 123
Query: 1433 DHKKYLLYT 1441
D+K+YLLYT
Sbjct: 124 DYKRYLLYT 132
Score = 43.5 bits (101), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 1189 TKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
K AS+ FL EFY+ SRLH +ST+G+ +KQ+++ L
Sbjct: 147 AKTASDPHFLEEFYSNSRLHLISTLGAEYKQFISDL 182
>gi|372199379|ref|YP_004957715.1| orf014 gene product [Escherichia phage vB_EcoM_CBA120]
gi|344055551|gb|AEM91747.1| topoisomerase II large subunit [Escherichia phage vB_EcoM_CBA120]
Length = 637
Score = 267 bits (682), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 203/646 (31%), Positives = 294/646 (45%), Gaps = 144/646 (22%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERRE-ITYVPGLY 85
+NK+ +E+ Y+K + +EHILLRP+ ++GS+ T+W+ + + + R+ Y P L
Sbjct: 2 SNKIDIERKYKKLTHIEHILLRPERHLGSIRSSVGTVWVYDPTKDKVIFRDNFEYSPALI 61
Query: 86 KIFDEILVNACDNKQ--RDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTM 143
K FDEI+ N D+ + + I +TV+ I V +NG GIPVV+H ++P M
Sbjct: 62 KQFDEIITNCVDHSKTSEGKGLTEITVTVSPMNGQIIVSDNG-GIPVVKHGVTNEWLPEM 120
Query: 144 IFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKV----TGGRNGYGAKLCN 199
+FG L SN+NDE+++ +GG+NG GA L N
Sbjct: 121 LFGS-------------------------LYAGSNFNDEDEEYNNQKSGGQNGEGASLVN 155
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSL 259
+FS F V TS + KKS+ Q+++DNMSK ++P I + K+ T I + PD + + L
Sbjct: 156 VFSKWFRVATS--DGKKSYTQLFEDNMSKKSNPVIGNTPKEFGTTIAWIPDYARLGVKGL 213
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT--DRQDEDGDPVKIIY 317
D++ + +I RRA++ AA +KV LNG+++ + F +V + DE D
Sbjct: 214 DQNNLLMIYRRAFEVAACNPRLKVVLNGKQIRIDRFGHFVDYFYAGSAVDETDD------ 267
Query: 318 ENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGC 377
W VAI PS F S+VNSIAT GG HVD V D IV I + KK K
Sbjct: 268 ------WSVAITPSSGAFMHASYVNSIATHIGGPHVDYVADQIVAAIRPQLVKKFK---- 317
Query: 378 TIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDS 437
LKP +KNH+ +FI I NP FDS
Sbjct: 318 ---------------------------------TELKPAMIKNHMSLFIAADINNPRFDS 344
Query: 438 QTKENMTLQKGSFGSTCVP-------------------------KLEDANDAGTKNSID- 471
QTKE MT FG+T P + EDA K I
Sbjct: 345 QTKERMTTPVSQFGTTYKPSERLIRKALEFVTAGLSKELASLRNEQEDAEFEKAKKDISK 404
Query: 472 --------------------CTLILTEGDSAKSLAVSGLGVVGRD--KYGVFPLRGKLLN 509
C+L+LTEGDSA + ++ RD K G+FPLRGK +N
Sbjct: 405 RDYREIEKYYPATARGDRSGCSLLLTEGDSASNPILN-----ARDTKKIGLFPLRGKFIN 459
Query: 510 VREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGL 569
A +++ N E NL I G + + RY + ++ TD D DG HI+GL
Sbjct: 460 CLNAPRSKVMANEEFKNLCTIHG-----GAVPGQPLDISRYPQTVVATDADDDGIHIRGL 514
Query: 570 IINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEW 615
+I WP +R L+ TP ++ F + E+EE+
Sbjct: 515 LITLYCTFWPEYVRQGRLKLLRTPYMRVWCGNIMHEFMNNAEYEEF 560
>gi|327409604|ref|YP_004347024.1| DNA topoisomerase II [Lausannevirus]
gi|326784778|gb|AEA06912.1| DNA topoisomerase II [Lausannevirus]
Length = 1090
Score = 267 bits (682), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 205/647 (31%), Positives = 307/647 (47%), Gaps = 118/647 (18%)
Query: 37 QKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNAC 96
Q+ + + L RP+T++GS+ P+ W + E M+ + + GL +I+ EI+ N
Sbjct: 5 QRLNDFQFALHRPETFLGSIRPLPHDRWYWSEENKKMKFGSLVFPEGLERIYYEIVSNGI 64
Query: 97 DNKQRDPK----MNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSS 152
DN R K M IK+T+N+ET +VWN+G IPV ++K + T G+ TS
Sbjct: 65 DNMFRSQKSGIPMKSIKVTLNRETGYCTVWNDGAHIPV----EKKEYSYTDELGNTTTSL 120
Query: 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCS 212
Y E + FG+ S+NYND E + T GRNG GAKL ++FS FVV
Sbjct: 121 LYPAE----------LFFGYSKASTNYNDSEVRKTSGRNGLGAKLTSVFSKHFVVRCFDP 170
Query: 213 EYKKSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITRRA 271
E K FKQ + DN+++ + P ++ +K +T+I+F PD +F + +V +
Sbjct: 171 EKKLIFKQEFFDNLTRRSEPVLEKCTKSRGWTEISFLPDFERFGLDGWSDALVSRFQKTM 230
Query: 272 YDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQD-----EDGDPVKIIYE-NVNPRWE 325
DA+ T + V N EK + ++Y KL++ + D ++ E NV
Sbjct: 231 RDASLVTGLI-VDFNEEKFSFSSLEEYAKLFSSENPNILALKSADSSFVLLEKNV----- 284
Query: 326 VAIAPSDRGFQQ-----VSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTII 380
SD F+ +SFVN + G HV+A A++ +++ K K G
Sbjct: 285 -----SDVVFESGQETSLSFVNGLEVFTG-VHVNAWKHAVLMPLLKAFNAKQKAEG---- 334
Query: 381 MLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTK 440
K M Q++ IF+ C + P F SQTK
Sbjct: 335 -----------KPKASMK------------------QLECFFHIFLVCDLDKPEFTSQTK 365
Query: 441 ENMT----------------LQKGSF----GSTCVPK--------------LEDANDAGT 466
+ L K SF S P+ ++DA AGT
Sbjct: 366 HELASPVPKVCKLKEEQVKKLLKWSFVPELSSRLDPRKLKKTKKLELNLKKVDDAQLAGT 425
Query: 467 KNSIDCTLILTEGDSAKSLAVSGL-GVVGRDKYGVFPLRGKLLNVREATHKQILENAEIN 525
+ S +CTLILTEGDSAK+LAVSG + R+KYG F L+GK+LN AT K I +N E+
Sbjct: 426 ERSSECTLILTEGDSAKTLAVSGFTSLQDREKYGAFALKGKVLNTTNATAKAIGKNKELE 485
Query: 526 NLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP 585
L +LGL + + ++TLRYG++++M D D+DG HI+ L++ F H +P LL
Sbjct: 486 MLRVVLGL-------SKDLVRTLRYGKVLLMCDADEDGKHIEALVLAFFHKFFPELLNNG 538
Query: 586 FLEEFITPIIKATKAR-EELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
F+ TPI+KA + +EL FYS +FE W + +KY K
Sbjct: 539 FVVSLQTPILKAFPTKNKELWFYSTKQFETWVQNNPGHKNLNVKYLK 585
Score = 90.9 bits (224), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 136/297 (45%), Gaps = 55/297 (18%)
Query: 661 EPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNFK 720
EP Y+PI+PM+LVNGA GIGTG T+IP+HNP +I + I+ + ++ + PW++ FK
Sbjct: 795 EPVNYLPILPMILVNGACGIGTGHSTEIPSHNPLDICEWIRCWLDNKEKPYLVPWWRGFK 854
Query: 721 GEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL--------LHGAEK 772
G+++ D + G + L +K I+E VG WT D K L+TL
Sbjct: 855 GKVE-VEDGKGRTFGILEKLSKEKWRISETPVGLWTYDCKMHLETLEKNKHIKSFEDKYT 913
Query: 773 DE-----------VHPGPGRKSHPRPIAPKSY-KIDDDS------EEEEIEEVFHDNELA 814
DE P + + K+ +D+D EEI E + D L
Sbjct: 914 DEEAAFVITTTKDFTPTMSNLKLSKAFSLKNMTALDEDDVPVKFRSTEEILEKYCDARLE 973
Query: 815 KPQKTGPQL-----ERQERQAAE--------------GEDDEAGSQTQEEEDPDK---DY 852
QK +L + +QA + E ++ + EE + DK +
Sbjct: 974 LYQKRKEKLLNDLSQEIVKQANKQRFLKDVLNNVLNMKEQEDVLLKKMEEMNYDKWQNSF 1033
Query: 853 DYLLGMTFWSLTMER---KNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDK 906
DYL+ M +LT R E+L+K +K + +L K+P ++W ++LD +K K
Sbjct: 1034 DYLVSMPIRTLTKGRLAEVGEILRKLKEKHS---LLSDKSPKEMWKEELDTFEKKYK 1087
>gi|422937788|ref|YP_007007990.1| DNA topoisomerase II [Salmonella phage PhiSH19]
gi|355398384|gb|AER70142.1| DNA topoisomerase II [Salmonella phage PhiSH19]
Length = 637
Score = 266 bits (679), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 202/646 (31%), Positives = 294/646 (45%), Gaps = 144/646 (22%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERRE-ITYVPGLY 85
+NK+ +E+ Y+K + +EHILLRP+ ++GS+ T+W+ + + + R+ Y P L
Sbjct: 2 SNKIDIERKYKKLTHIEHILLRPERHLGSIRSSVGTVWVYDPTKDKVIFRDNFEYSPALI 61
Query: 86 KIFDEILVNACDNKQ--RDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTM 143
K FDEI+ N D+ + + I +TV+ I V +NG GIPVV+H ++P M
Sbjct: 62 KQFDEIITNCVDHSKTPEGKGLTEITVTVSPMNGQIIVSDNG-GIPVVKHGVTNEWLPEM 120
Query: 144 IFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKV----TGGRNGYGAKLCN 199
+FG L SN+NDE+++ +GG+NG GA L N
Sbjct: 121 LFGS-------------------------LYAGSNFNDEDEEYNNQKSGGQNGEGASLVN 155
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSL 259
+FS F V TS + KKS+ Q+++DNMSK ++P I + K+ T I + PD + + L
Sbjct: 156 VFSKWFRVATS--DGKKSYTQLFEDNMSKKSNPVIGNTPKEFGTTIAWIPDYARLGVKGL 213
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT--DRQDEDGDPVKIIY 317
D++ + +I RRA++ AA +KV LNG+++ + F +V + DE D
Sbjct: 214 DQNNLLMIYRRAFEVAACNPRLKVVLNGKQIRIDRFGHFVDYFYAGSAVDETDD------ 267
Query: 318 ENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGC 377
W VAI PS F S+VNSIAT GG HVD V D IV I + KK K
Sbjct: 268 ------WSVAITPSSGAFMHASYVNSIATHIGGPHVDYVADQIVAAIRPQLVKKFK---- 317
Query: 378 TIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDS 437
LKP +KNH+ +FI I NP FDS
Sbjct: 318 ---------------------------------TELKPAMIKNHMSLFIAADINNPRFDS 344
Query: 438 QTKENMTLQKGSFGSTCVP-------------------------KLEDANDAGTKNSID- 471
QTKE MT FG++ P + EDA K I
Sbjct: 345 QTKERMTTPVSQFGTSYKPSDKLIRKALEFVTAGLSKELASLRNEQEDAEFEKAKKDISK 404
Query: 472 --------------------CTLILTEGDSAKSLAVSGLGVVGRD--KYGVFPLRGKLLN 509
C+L+LTEGDSA + ++ RD K G+FPLRGK +N
Sbjct: 405 RDYREIEKYYPATARGDRSGCSLLLTEGDSASNPILN-----ARDTKKIGLFPLRGKFIN 459
Query: 510 VREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGL 569
A +++ N E NL I G + + RY + ++ TD D DG HI+GL
Sbjct: 460 CLNAPRSKVMANEEFKNLCTIHG-----GAVPGQPLDISRYPQTVVATDADDDGIHIRGL 514
Query: 570 IINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEW 615
+I WP +R L+ TP ++ F + E+EE+
Sbjct: 515 LITLYCTFWPEYVRQGRLKLLRTPYMRVWCGNIMHEFMNNAEYEEF 560
>gi|145480573|ref|XP_001426309.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393383|emb|CAK58911.1| unnamed protein product [Paramecium tetraurelia]
Length = 1196
Score = 265 bits (677), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 137/266 (51%), Positives = 175/266 (65%), Gaps = 51/266 (19%)
Query: 413 LKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC------------------ 454
+KPFQVK+ I IF+NC IVNP FDSQTKE +T + FGST
Sbjct: 14 IKPFQVKSFIKIFLNCQIVNPAFDSQTKETLTTKAQKFGSTFEVSEKFLDEIIKKTEIID 73
Query: 455 ----------------------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLA 486
+ KLEDANDAGTKN+ CTLILTEGDSAKSLA
Sbjct: 74 NVILQAKSRLNKQLSKQLSAKKQQRLLGIDKLEDANDAGTKNADLCTLILTEGDSAKSLA 133
Query: 487 VSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMK 546
++G+ +VGRD++GVFPLRGKLLNVR+A+ + I++NAEI LVKI+GLQ++K Y E+ K
Sbjct: 134 MAGIEIVGRDRFGVFPLRGKLLNVRDASIQMIMKNAEIEQLVKIMGLQFNKNY---ENTK 190
Query: 547 TLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELS 605
+LRYG +MIMTDQD DG HIKGLIINFI WP+L ++ FL++F+TPIIK TK +E S
Sbjct: 191 SLRYGSIMIMTDQDHDGHHIKGLIINFIEKFWPSLFKMKGFLKQFVTPIIKVTKGKEFHS 250
Query: 606 FYSLPEFEEWKEETTNWHTYKIKYYK 631
F+S+ E++++ E YK+KYYK
Sbjct: 251 FFSIGEYKKFIAENPR-EDYKVKYYK 275
Score = 109 bits (272), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 88/159 (55%), Gaps = 21/159 (13%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EP W+ PI+P+VL+NGAEGIGTGW T++PN NPREI IKR +RGE+ + PWYK F
Sbjct: 487 VEPFWFTPILPLVLINGAEGIGTGWSTQVPNFNPREICQQIKRKLRGEEFEELVPWYKGF 546
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDEVHPGP 779
G I G ++++ G I + L ITE+ K +Y+ + + + AE
Sbjct: 547 TGSIT-AGTNQYIAKGSF-IQHKNHLYITEIPPKKSVKEYQAFIQSKMEVAEG------- 597
Query: 780 GRKSHPRPIAPKSY----------KIDDDSEEEEIEEVF 808
KS P + K Y K+ D+ +++IE+ F
Sbjct: 598 --KSEPEILDMKEYHAGNKVCFELKVTDEVLKQDIEKYF 634
Score = 44.3 bits (103), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 849 DKDYDYLLGMTFWSLTMERKNEL---LKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
+K YDYLL M W+ + E+ +K+ D++T LN KK P +WS+DLD E
Sbjct: 751 EKQYDYLLSMPMWNFSEEKITAFKQQIKQLQDQITALN---KKTPQQIWSEDLDEFLE 805
>gi|351518454|ref|YP_004895182.1| unnamed protein product [Salmonella phage SFP10]
gi|345451042|gb|AEN94106.1| DNA topoisomerase II large subunit [Salmonella phage SFP10]
Length = 637
Score = 264 bits (675), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 202/646 (31%), Positives = 294/646 (45%), Gaps = 144/646 (22%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERRE-ITYVPGLY 85
+NK+ +E+ Y+K + +EHILLRP+ ++GS+ T+W+ + + + R+ Y P L
Sbjct: 2 SNKIDIERKYKKLTHIEHILLRPERHLGSIRSSVGTVWVYDPTKDKVIFRDNFEYSPALI 61
Query: 86 KIFDEILVNACDNKQ--RDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTM 143
K FDEI+ N D+ + + I +TV+ I V +NG GIPVV+H ++P M
Sbjct: 62 KQFDEIITNCVDHSKTPEGKGLTEITVTVSPMNGQIIVSDNG-GIPVVKHGVTNEWLPEM 120
Query: 144 IFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKV----TGGRNGYGAKLCN 199
+FG L SN+NDE+++ +GG+NG GA L N
Sbjct: 121 LFGS-------------------------LYAGSNFNDEDEEYNNQKSGGQNGEGASLVN 155
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSL 259
+FS F V TS + KKS+ Q+++DNMSK ++P I + K+ T I + PD + + L
Sbjct: 156 VFSKWFRVATS--DGKKSYTQLFEDNMSKKSNPVIGNTPKEFGTTIAWIPDYARLGVKGL 213
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT--DRQDEDGDPVKIIY 317
D++ + +I RRA++ AA +KV LNG+++ + F +V + DE D
Sbjct: 214 DQNNLLMIYRRAFEVAACNPRLKVVLNGKQIRIDRFGHFVDYFYAGSAVDETDD------ 267
Query: 318 ENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGC 377
W VAI PS F S+VNSIAT GG HVD V D IV I + KK K
Sbjct: 268 ------WSVAITPSSGVFMHASYVNSIATHIGGPHVDYVADQIVAAIRPQLVKKFK---- 317
Query: 378 TIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDS 437
LKP +KNH+ +FI I NP FDS
Sbjct: 318 ---------------------------------TELKPAMIKNHMSLFIAADINNPRFDS 344
Query: 438 QTKENMTLQKGSFGSTCVP-------------------------KLEDANDAGTKNSID- 471
QTKE MT FG++ P + EDA K I
Sbjct: 345 QTKERMTTPVSQFGTSYKPSDKLIRKALEFVTAGLSKELASLRNEQEDAEFEKAKKDISK 404
Query: 472 --------------------CTLILTEGDSAKSLAVSGLGVVGRD--KYGVFPLRGKLLN 509
C+L+LTEGDSA + ++ RD K G+FPLRGK +N
Sbjct: 405 RDYREIEKYYPATARGDRSGCSLLLTEGDSASNPILN-----ARDTKKIGLFPLRGKFIN 459
Query: 510 VREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGL 569
A +++ N E NL I G + + RY + ++ TD D DG HI+GL
Sbjct: 460 CLNAPRSKVMANEEFKNLCTIHG-----GAVPGQPLDISRYPQTVVATDADDDGIHIRGL 514
Query: 570 IINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEW 615
+I WP +R L+ TP ++ F + E+EE+
Sbjct: 515 LITLYCTFWPEYVRQGRLKLLRTPYMRVWCGNIMHEFMNNAEYEEF 560
>gi|357441041|ref|XP_003590798.1| Defensin/CCP-like protein [Medicago truncatula]
gi|355479846|gb|AES61049.1| Defensin/CCP-like protein [Medicago truncatula]
Length = 1176
Score = 264 bits (675), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 210/623 (33%), Positives = 306/623 (49%), Gaps = 144/623 (23%)
Query: 47 LRPDTYIGSVEPITETMWLMNR-----ETNHMERREITYVPGLYKIFDEILVNACDNKQR 101
+ P+ +I ++P T L+ R E + + R+I+YVPGLY IFD IL++A D K+R
Sbjct: 1 MTPNIFIPFLQPRKYTHTLVFRKQWVYENDKIIHRKISYVPGLYNIFDIILIHAADRKRR 60
Query: 102 DPKMNCIKITVNQETNTISVWNNGKGIPVV--EHKDE--KMFVPTMIFGHLLTSSNYNDE 157
DP M+ +++ + E N I V+ KG+P++ E D K F PT +L +S Y +
Sbjct: 61 DPYMDRLEVNIIPEVNEIYVY--MKGVPLLGDETFDNVIKKFHPT----NLYSSYCYVEI 114
Query: 158 EDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKS 217
D G S +++ T N LC+
Sbjct: 115 AD-----------GQRFWSQEFHNATPVATKCFN-----LCD------------------ 140
Query: 218 FKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAS 277
W + M K P++ D F +L K + + K ++D+ A
Sbjct: 141 -NGKWTNVMFK---PDL-----DKFD----MKNLEKDVIALMKKRVLDM-------AVCL 180
Query: 278 TKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQ 337
+ V V LNG +PVK+F+DY + DR P+ + + R E+ ++ SD FQQ
Sbjct: 181 GETVTVVLNGTVIPVKSFKDYANFFLDRAKP--FPLPRTHAKLGDRLEICLSLSDGKFQQ 238
Query: 338 VSFVNSIATTKGGRHVDAVVDAIVKQI-IEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQ 396
VSFVNSIAT KGG HVD + I I EV+KKK+ ++
Sbjct: 239 VSFVNSIATIKGGTHVDYITKQITTYIKKEVLKKKHVNVNAD------------------ 280
Query: 397 MAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT------------ 444
VKN +W+F+N LI NP F+SQTKE +T
Sbjct: 281 --------------------TVKNQLWVFVNALIDNPAFNSQTKEMLTTKPARLGLKFFP 320
Query: 445 ------LQKGSFGSTCVPKLE-------DANDAGTKNSIDCTLILTEGDSAKSLAVSGL- 490
+QK +P++ DA AG +S CTLILT+G K LA+SGL
Sbjct: 321 GSMLNDVQKSQILDNLLPRIPFKHRTHVDAKLAGRPDSGKCTLILTQGQYVKDLAMSGLS 380
Query: 491 GVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRY 550
VV D YGVFPL KLLN + K + + EI NL+ ILGL +KKY+ + K LRY
Sbjct: 381 AVVDPDLYGVFPLSSKLLNATRDSRK-LFKKKEIQNLMAILGLVRNKKYS---NAKCLRY 436
Query: 551 GRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAR--EELSFY 607
G+LM+M +QD+DG+H KGL+INF + WP+LL++ F+ F PIIKA+ ++ +ELSF
Sbjct: 437 GQLMVMANQDEDGAHFKGLLINFFYSFWPSLLKVSKFMSVFTFPIIKASDSKKGKELSFD 496
Query: 608 SLPEFEEWKEETTN-WHTYKIKY 629
S+ ++E+WK+E N + ++IKY
Sbjct: 497 SMQQYEDWKKELGNTANDWEIKY 519
Score = 103 bits (256), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 70/112 (62%), Gaps = 3/112 (2%)
Query: 658 GR-IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWY 716
GR I+P WYIPIIP+VLVNG +GT + + IP ++P EI+ N++R + E+ + MKPWY
Sbjct: 723 GRSIQPNWYIPIIPLVLVNGCHAMGTCFSSDIPKYHPYEIIKNVRRFLNNEEMVSMKPWY 782
Query: 717 KNFKGEIDYC--GDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
K F G I+ G + V+G + +++ I EL + WT DYK L+ +
Sbjct: 783 KGFGGTIEKSAKGIGYYTVDGLVERINEQTFRIKELPIRMWTEDYKKFLEKI 834
>gi|418488643|ref|YP_007002652.1| topoisomerase II large subunit [Escherichia phage PhaxI]
gi|363453832|gb|AEW24240.1| topoisomerase II large subunit [Escherichia phage PhaxI]
Length = 637
Score = 263 bits (673), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 201/646 (31%), Positives = 294/646 (45%), Gaps = 144/646 (22%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERRE-ITYVPGLY 85
+NK+ +E+ Y+K + +EHILLRP+ ++GS+ T+W+ + + + R+ Y P L
Sbjct: 2 SNKIDIERKYKKLTHIEHILLRPERHLGSIRSSVGTVWVYDPTKDKVIFRDNFEYSPALI 61
Query: 86 KIFDEILVNACDNKQ--RDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTM 143
K FDEI+ N D+ + + I +TV+ I V +NG GIPVV+H ++P M
Sbjct: 62 KQFDEIITNCVDHSKTSEGKGLTEITVTVSPMNGQIIVSDNG-GIPVVKHGVTNEWLPEM 120
Query: 144 IFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKV----TGGRNGYGAKLCN 199
+FG L SN+NDE+++ +GG+NG GA L N
Sbjct: 121 LFGS-------------------------LYAGSNFNDEDEEYNNQKSGGQNGEGASLVN 155
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSL 259
+FS F V TS + KKS+ Q+++DNMSK ++P I + K+ T I + PD + + L
Sbjct: 156 VFSKWFRVATS--DGKKSYTQLFEDNMSKKSNPVIGNTPKEFGTTIAWIPDYARLGVKGL 213
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY--TDRQDEDGDPVKIIY 317
D++ + +I RRA++ AA +KV LNG+++ + F +V + DE D
Sbjct: 214 DQNNLLMIYRRAFEVAACNPRLKVVLNGKQIRIDRFGHFVDYFYAGSAVDETDD------ 267
Query: 318 ENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGC 377
W VAI PS F S+VNSIAT GG HVD V D IV I + KK K
Sbjct: 268 ------WSVAITPSSGAFMHASYVNSIATHIGGPHVDYVADQIVAAIRPQLVKKFK---- 317
Query: 378 TIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDS 437
LKP +KNH+ +FI I NP FDS
Sbjct: 318 ---------------------------------TELKPAMIKNHMSLFIAADINNPRFDS 344
Query: 438 QTKENMTLQKGSFGSTCVP-------------------------KLEDANDAGTKNSID- 471
QTKE MT FG++ P + E+A K I
Sbjct: 345 QTKERMTTPVSQFGTSYKPSDKLIRKALEFVTAGLSKELASLRNEQENAEFEKAKKDISK 404
Query: 472 --------------------CTLILTEGDSAKSLAVSGLGVVGRD--KYGVFPLRGKLLN 509
C+L+LTEGDSA + ++ RD K G+FPLRGK +N
Sbjct: 405 RDYREIEKYYPATARGDRSGCSLLLTEGDSASNPILN-----ARDTKKIGLFPLRGKFIN 459
Query: 510 VREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGL 569
A +++ N E NL I G + + RY + ++ TD D DG HI+GL
Sbjct: 460 CLNAPRSKVMANEEFKNLCTIHG-----GAVPGQPLDISRYPQTVVATDADDDGIHIRGL 514
Query: 570 IINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEW 615
+I WP +R L+ TP ++ F + E+EE+
Sbjct: 515 LITLYCTFWPEYVRQGRLKLLRTPYMRVWCGNIMHEFMNNAEYEEF 560
>gi|282599154|ref|YP_003359071.1| gp60plus39 DNA topoisomerase subunit [Deftia phage phiW-14]
gi|257219224|gb|ACV50239.1| gp60plus39 DNA topoisomerase subunit [Deftia phage phiW-14]
Length = 648
Score = 263 bits (672), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 189/646 (29%), Positives = 301/646 (46%), Gaps = 130/646 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVE-PITETMWLMNRETNHMERREITYVPGLYKIFDEILVN 94
Y+ S+ +HI +RP Y+G + + + W +N E +ERR++ P K+FDEI+ N
Sbjct: 28 YKMLSERDHIRIRPGRYLGDINTSLVKDSWTVN-EQGQVERRDVQQNPAFTKLFDEIITN 86
Query: 95 ACD-NKQRDPK-MNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSS 152
+ D + D K +N I++ ++E ISV++NG GIPVVE ++ PT ++
Sbjct: 87 SADFSLTADGKHLNIIRVDYSREHGCISVYDNG-GIPVVETIVDREGQPTKLW------- 138
Query: 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCS 212
+P MIFG L + SN+NDE D + G+NG G+ L N+FSS+F VET C
Sbjct: 139 ------------IPDMIFGFLRSGSNFNDEADSESAGQNGEGSTLVNVFSSRFDVET-C- 184
Query: 213 EYKKSFKQVWKDNMSKVTSPEIKSG-SKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRA 271
+ K F + D M+ T+PE+ + FT+IT+ P+ + MT + + D + RR
Sbjct: 185 DGKNKFSITYLDGMANKTAPEVVAAQGATPFTRITYFPEWSIMGMTGQEDWIEDTLRRRC 244
Query: 272 YDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPS 331
+ AA ++V+ NG+ + VK F D+ + DPV + P+W+VA++ S
Sbjct: 245 LEVAACNTHIRVYYNGKPVNVKKFGDFAAML--------DPVCV--SESAPKWDVALSLS 294
Query: 332 DRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVK 391
GF+ S+VNS T GG H++ V+D IV ++ ++ K K
Sbjct: 295 KNGFKHYSYVNSTLTFVGGTHINHVMDKIVAEVRAHIESKTK------------------ 336
Query: 392 NNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFG 451
+KP ++ N + + I NP + SQTKEN+ S+
Sbjct: 337 -------------------QDIKPAEILNQFQLTVAARINNPRYSSQTKENLITPVSSYN 377
Query: 452 STCVP-----------------------------------KLEDANDAG----------- 465
P +++DA A
Sbjct: 378 VKYSPSKEFIKAIIDSPMMKKLLEWAERRKAVQDIKEAEKEIQDARKASFHHIPKYRPAT 437
Query: 466 TKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEIN 525
KN + L + EGDS A+ L + +G+FPLRGK NV + T + + + E
Sbjct: 438 NKNKAENILFVAEGDS----ALKPLQAAKKPHHGLFPLRGKPDNVFDKTIRHLAKQKEFQ 493
Query: 526 NLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP 585
+L++ILGL + + T+RY L++ TD D DG+HI+GL+ W L+
Sbjct: 494 DLIQILGLDLHQF-----NSDTIRYSALVVATDADLDGAHIRGLLTVAFWRFWRPLIDEG 548
Query: 586 FLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
FL +TPII + +E + F++ E+E+W+ Y KYYK
Sbjct: 549 FLRFLVTPIITVKQGKETIEFFTEQEYEDWRAANPT-AKYTRKYYK 593
>gi|284504201|ref|YP_003406916.1| DNA topoisomerase II [Marseillevirus]
gi|282935639|gb|ADB03954.1| DNA topoisomerase II [Marseillevirus]
Length = 1089
Score = 263 bits (671), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 192/642 (29%), Positives = 308/642 (47%), Gaps = 109/642 (16%)
Query: 37 QKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNAC 96
++ + + L RP+T++GS+ + W + E M + + GL +IF EI+ NA
Sbjct: 5 RRLNDFQFALHRPETFLGSIRSLPHERWYWSEEKKTMLFGTLEFPEGLERIFYEIVSNAV 64
Query: 97 DNKQRDP----KMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSS 152
DN R M +K+++++ET +VWN+G I V ++K + T G+ +S
Sbjct: 65 DNFFRSSVSGIPMKSVKVSLDRETGYCTVWNDGAHISV----EKKEYSYTDELGNTSSSL 120
Query: 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCS 212
Y E + FG+ S+NYND+E + T GRNG GAKL +IFS FVV
Sbjct: 121 LYPAE----------LFFGYSKASTNYNDDEVRKTSGRNGLGAKLTSIFSKHFVVRCFDP 170
Query: 213 EYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRA 271
E ++ F+Q + DN+++ T P I K K +T++ F PD +F + + ++ +
Sbjct: 171 EKQRIFQQEFFDNLTRRTPPVIEKCTKKKGWTEVRFLPDFARFGLDGWTEPLLSRFQKTL 230
Query: 272 YDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVA---- 327
DA+ T + N EK + +YV L++ +P + + + R+ +
Sbjct: 231 RDASLVT-GLSASFNEEKFSFQTLPEYVALFSG-----SNPNFLCLSSPDSRFALLEKNP 284
Query: 328 -IAPSDRGFQ-QVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
+ P++ + +SFVN + G HV+A +A++ +++ K K G
Sbjct: 285 ELVPTEPSQETSLSFVNGLEVFTG-VHVNAWKNAVLMPLLKAFNAKQKAEG--------- 334
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT- 444
K M Q++ +F+ C + P F SQTK +
Sbjct: 335 ------KPKASMK------------------QLECFFHLFVVCDLDKPEFTSQTKHELAS 370
Query: 445 ---------------LQKGSFGSTC------------------VPKLEDANDAGTKNSID 471
L K F + K++DA AGT S +
Sbjct: 371 PTPKTTKVSPEQIKKLMKWGFVQELSSRLDPKKTKKTKKLVLDLTKVDDAQLAGTSRSAE 430
Query: 472 CTLILTEGDSAKSLAVSGL-GVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKI 530
C LILTEGDSAK+LAVSG + R++YG F L+GK+LN AT K I +N E+ L +
Sbjct: 431 CILILTEGDSAKTLAVSGFTSLKDRERYGAFALKGKVLNTTNATQKTIGKNKELELLKNV 490
Query: 531 LGLQYSKKYTTVEDM-KTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEE 589
LGL +D+ KTLRYG++++M D D+DG HI+GL++NF+H ++P LL F++
Sbjct: 491 LGLS--------KDLGKTLRYGKVLLMCDADEDGKHIEGLVLNFLHKHYPELLEKGFVQS 542
Query: 590 FITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
TPI+KA + E F+S +FEEW + K++Y+K
Sbjct: 543 LRTPILKAFLGKREEWFFSTTKFEEWLSKNPGHKNLKVQYFK 584
Score = 80.5 bits (197), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 661 EPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNFK 720
EP YIPIIP+++VNGA GIGTG T+IP HNP E+ I+ + ++ + PW+K F
Sbjct: 794 EPINYIPIIPLIVVNGACGIGTGHSTEIPPHNPLEVCHWIRCWLEEQETPKLSPWWKGFN 853
Query: 721 GEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
G + D + G + + K +I E VG WT D K L++L
Sbjct: 854 GTTEVEED-KVKTFGVLEKMSKTKWKIVETPVGLWTYDCKKHLESL 898
>gi|448259958|ref|YP_007237335.1| putative DNA topoisomerase II gp39 [Dickeya phage
vB_DsoM_LIMEstone1]
gi|384228610|emb|CCD57574.1| putative DNA topoisomerase II gp39 [Dickeya phage
vB_DsoM_LIMEstone1]
Length = 632
Score = 263 bits (671), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 201/639 (31%), Positives = 296/639 (46%), Gaps = 138/639 (21%)
Query: 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERRE-ITYVPGLYKIF 88
+ V + Y+K S +EHILLRP+ ++GS+ W+ + + + ++ Y P L K F
Sbjct: 2 VDVNRKYKKLSHIEHILLRPERHLGSIRSSVGMAWVYDLSKDKVVFKDNFEYNPALIKQF 61
Query: 89 DEILVNACDNKQ--RDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFG 146
DEI+ N D+ + + I +TV+ I V +NG GIPVV+H + M++P M+F
Sbjct: 62 DEIITNCVDHSKTPEGKSLTEITVTVSPMNGQIIVADNG-GIPVVKH-ESGMWLPEMLFS 119
Query: 147 HLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFV 206
L SN+ND++++ YN+++ +GG+NG GA L N+FS F
Sbjct: 120 ELFAGSNFNDDDEE------------------YNNQK---SGGQNGEGASLVNVFSKWFR 158
Query: 207 VETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDL 266
V T ++ KKS+ Q ++DNMSK ++P I S T I + PD + + LD++ + +
Sbjct: 159 VTT--NDGKKSYAQTFEDNMSKKSNPVI-SNMNSPGTSIAWIPDYARLGVKGLDQNNLLM 215
Query: 267 ITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT--DRQDEDGDPVKIIYENVNPRW 324
I RRA++ AA +KV LNG+++ + F +V + DE GD W
Sbjct: 216 IYRRAFEVAACNPRLKVVLNGKQIRIDRFGHFVDYFYAGSAVDEAGD------------W 263
Query: 325 EVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFG 384
VA+APS F S+VNSIAT GG HVD V D IV I + KK K
Sbjct: 264 SVAVAPSSGTFMHASYVNSIATHIGGPHVDYVADQIVAAIRPQLVKKFK----------- 312
Query: 385 NKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT 444
LKP +KNH+ +FI+ I NP FDSQTKE MT
Sbjct: 313 --------------------------TELKPAMIKNHMSLFISADINNPRFDSQTKERMT 346
Query: 445 LQKGSFGSTCVP--KL-----------------------EDANDAGTKNSID-------- 471
FG++ P KL +DA K I
Sbjct: 347 TPVSQFGTSYKPSDKLIRKALEFVTAGLSKELAALRNDQDDAEFEKAKKDISKRDYREIE 406
Query: 472 -------------CTLILTEGDSAKSLAVSGLGVVGRD--KYGVFPLRGKLLNVREATHK 516
C+L+LTEGDSA + ++ RD K G+FPLRGK +N A
Sbjct: 407 KYYPATARGDRSGCSLLLTEGDSASNPILN-----ARDTKKIGLFPLRGKFINCLNAPRS 461
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
+++ N E NL I G + + RY + ++ TD D DG HI+GL+I
Sbjct: 462 KVMANEEFKNLCTIHG-----GAVPGQPLDISRYPQTVVATDADDDGIHIRGLLITLYCT 516
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEW 615
WP +R L+ TP ++ + F + E+EE+
Sbjct: 517 FWPEYVRQGRLKLLRTPYMRVWCGKVMHEFMNNAEYEEF 555
>gi|326804512|ref|YP_004327383.1| DNA topoisomerase 2 [Salmonella phage Vi01]
gi|301795162|emb|CBW37880.1| DNA topoisomerase 2 [Salmonella phage Vi01]
gi|397133797|gb|AFO10306.1| DNA topoisomerase [Escherichia phage ECML-4]
gi|408387314|gb|AFU64320.1| DNA topoisomerase [Salmonella phage STML-13-1]
Length = 636
Score = 261 bits (667), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 201/645 (31%), Positives = 295/645 (45%), Gaps = 143/645 (22%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERRE-ITYVPGLY 85
+N + +E+ Y+K + +EHILLRP+ ++GS+ T W+ + + + ++ Y P L
Sbjct: 2 SNMIDIERKYKKLTHIEHILLRPERHLGSIRSAVGTTWIYDPIKDQVIFKDNFEYSPALI 61
Query: 86 KIFDEILVNACDNKQ--RDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTM 143
K FDEI+ N+ D+ + + I ITV+ I V +NG GIPVV+H + K ++P M
Sbjct: 62 KQFDEIITNSVDHSKTPEGKSLTEITITVSPMNGQIIVADNG-GIPVVKHGETKEWLPEM 120
Query: 144 IFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEE----DKVTGGRNGYGAKLCN 199
+FG L SN+ND++ +K +GG+NG GA L N
Sbjct: 121 LFGS-------------------------LYAGSNFNDDDEEYNNKKSGGQNGEGASLVN 155
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSL 259
+FS F V T+ + KKS+ Q ++DN+SK ++P I S T I + PD + + L
Sbjct: 156 VFSKWFRVTTN--DGKKSYTQTFEDNLSKRSNPVI-SNLNAPGTSIAWIPDYARLGVKGL 212
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYEN 319
D++ + +I RRA++ AA +KV LNG+++ + F +V + D
Sbjct: 213 DQNNLLMIYRRAFEVAACNPRLKVILNGKQIRIDRFGHFVDYFCQGSSVDE--------- 263
Query: 320 VNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQII-EVVKKKNKDLGCT 378
W VA+APS F S+VNSIAT GG HVD V D IV I ++VKK D
Sbjct: 264 -TEEWSVAVAPSQGTFIHASYVNSIATHIGGPHVDYVADQIVNAIRPQLVKKFKTD---- 318
Query: 379 IIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQ 438
LKP +KNH+ +FI+ I NP FDSQ
Sbjct: 319 ----------------------------------LKPSMIKNHMMLFISADINNPRFDSQ 344
Query: 439 TKENMTLQKGSFGSTCVP--KL-----------------------EDANDAGTKNSID-- 471
TKE MT FG+T P KL +DA K I
Sbjct: 345 TKERMTTPVSQFGTTYKPSDKLIRKALEFVTAGLSKELAALRNDQDDAEFEKAKKDISKR 404
Query: 472 -------------------CTLILTEGDSAKSLAVSGLGVVGRD--KYGVFPLRGKLLNV 510
C+L+LTEGDSA + ++ RD K G+FPLRGK +N
Sbjct: 405 DYREIEKYYPATARGDRSGCSLLLTEGDSASNPILN-----ARDTKKIGLFPLRGKFINC 459
Query: 511 REATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLI 570
+++ N E NL I G + + RY + ++ TD D DG HI+GL+
Sbjct: 460 LNNPRSKVMNNEEFKNLCTIHGGAVPG-----QPIDITRYPQTVVATDADDDGIHIRGLL 514
Query: 571 INFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEW 615
I WP +R L+ TP ++ + F S E+EE+
Sbjct: 515 ITLYCTYWPEYVRQGRLKLLRTPYMRIWCGKTMYEFMSNTEYEEF 559
>gi|242013851|ref|XP_002427614.1| terminal deoxycytidyl transferase rev1, putative [Pediculus humanus
corporis]
gi|212512029|gb|EEB14876.1| terminal deoxycytidyl transferase rev1, putative [Pediculus humanus
corporis]
Length = 752
Score = 260 bits (665), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 135/318 (42%), Positives = 193/318 (60%), Gaps = 43/318 (13%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ VSCDE+Y+DC+ +L ++ + P++FA+ LR+ I ++T CT S G NKL ARLATKK
Sbjct: 344 IEPVSCDELYIDCTSVLSQIKINPIKFANILRQEIEEKTKCTSSVGISENKLLARLATKK 403
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKPNG F LTP+ + +F+ + + D+PG+G ++ L L +TC DLQN SL L +
Sbjct: 404 AKPNGVFFLTPEKVEEFIKKVSIYDVPGIGRNIGGILKKLSVETCEDLQNFSLSFLMKTL 463
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
G+K G LY HCRG DD+++ +RKSVSAE+NYGIRF +N+E E FLK+L+ EV KRL
Sbjct: 464 GSKIGKNLYDHCRGIDDRKINCNFERKSVSAEINYGIRFNDNEETEIFLKELSQEVSKRL 523
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVR 2138
+KM GK ITLK+M R+ +AP EA+K+LGHG+CD I++S +LP
Sbjct: 524 VNIKMAGKNITLKIMFRAKDAPIEAAKYLGHGLCDVISRSVTLP---------------- 567
Query: 2139 SAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQ 2198
+AS + + I V+ + + L + P ELRGIGI
Sbjct: 568 ------QAS---------------------NDENIIANNVINLYHLLNIPPNELRGIGIH 600
Query: 2199 VSKLEHQSKTLATIDTFF 2216
V+KL+ +K I ++F
Sbjct: 601 VNKLDSINKLSRKIQSYF 618
Score = 240 bits (613), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 159/438 (36%), Positives = 229/438 (52%), Gaps = 118/438 (26%)
Query: 1322 MEAKKRKLEEQFELE-ANSDSR----GGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELK 1376
M AK KLE QFE + A+ D + IF+G++IFVNGYT+ PSA+EL+
Sbjct: 1 MNAKITKLEAQFEEDKADVDQKLQKVDDIFKGISIFVNGYTE-----------PSADELR 49
Query: 1377 ALMMLHGGIYHHY-ESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHK 1435
LM+LHGG+YHHY +TTHIIAS LP+ K +++K KI+K EWI +SI A KLL++
Sbjct: 50 CLMLLHGGVYHHYYRPGKTTHIIASTLPNAKFQQMKTL-KIVKCEWITESIKAKKLLNYN 108
Query: 1436 KYLLYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSEAVN 1495
Y LLQ + E + T+ES
Sbjct: 109 NY-------------LLQNKFSEGNKV-----------------------TKESLLSGNG 132
Query: 1496 SEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHH 1555
++ KSE + S+K A+++ +L EFYN SRLH+
Sbjct: 133 FQKGKSEMEKYV--------------------------SSKTAADKGYLNEFYNNSRLHY 166
Query: 1556 LSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPV 1615
+S++G+M KQ+V E++E H+GVF ++ +L D D E+ F + + +
Sbjct: 167 ISSLGNMLKQHVWEIKENHNGVFPKLQ-------NLVGNSDFDSEDVFWN-------KNI 212
Query: 1616 IMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGN--------------------SSKVR- 1654
MHIDMDCFFVSV +R++P L+ +PVAV H K N S K++
Sbjct: 213 YMHIDMDCFFVSVALRNYPHLKGQPVAVTHSKINFGANNSLIETKLNLAVENLDSLKLKS 272
Query: 1655 -EGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVS 1713
EGV+++++ + + R+ G+ NGM++G ALK CPNLK + YDF+GYKEVS
Sbjct: 273 DEGVNQESK--AFSMSEIASCSYEARKAGVCNGMYLGSALKLCPNLKTISYDFKGYKEVS 330
Query: 1714 YCLYNLIASLTLNIEAVS 1731
+ LYN +A TL+IE VS
Sbjct: 331 FMLYNTVAEYTLDIEPVS 348
Score = 47.0 bits (110), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 29/34 (85%)
Query: 1188 STKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYV 1221
S+K A+++ +L EFYN SRLH++S++G+M KQ+V
Sbjct: 145 SSKTAADKGYLNEFYNNSRLHYISSLGNMLKQHV 178
>gi|212645657|ref|NP_495440.4| Protein CIN-4 [Caenorhabditis elegans]
gi|158514533|gb|ABW69249.1| chromosome instability 4 [Caenorhabditis elegans]
gi|373220462|emb|CCD73727.1| Protein CIN-4 [Caenorhabditis elegans]
Length = 842
Score = 258 bits (660), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 117/176 (66%), Positives = 141/176 (80%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+PKLEDANDAGTKNS CTLILTEGDSAK+LAVSGL VVGRDKYGVFP R KLLNV +
Sbjct: 40 IPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDKYGVFPFRRKLLNVCDLN 99
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
QI ++AE+N ++KILGLQY+KKY T +D KTLRYG+L+IM + D DGS KGL++NF
Sbjct: 100 VNQIADSAEVNAIIKILGLQYTKKYETEDDFKTLRYGKLLIMANHDSDGSQFKGLLLNFF 159
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYY 630
H WP L + F+E+FITPI KAT+ +EE+SFYSLPE+ EW+ T NW +Y IKYY
Sbjct: 160 HRFWPALFKRDFVEDFITPIAKATEGKEEVSFYSLPEYSEWRMNTDNWKSYTIKYY 215
Score = 154 bits (389), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 87/115 (75%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPEWY PIIPMVLVNGA+G GTGW T IPN+NPRE+V NIKR+I GE + PWYKN
Sbjct: 434 RIEPEWYCPIIPMVLVNGAQGTGTGWSTNIPNYNPRELVKNIKRLIAGEPQKALAPWYKN 493
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F+G+I SRF GE+++LDD+ +EITEL + +WT DYK+ L+ L+ ++K
Sbjct: 494 FRGKIIQIDPSRFACYGEVSVLDDNTIEITELPIKQWTQDYKEKVLEGLMESSDK 548
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 10/76 (13%)
Query: 834 EDDEAGSQTQEEEDPDK----------DYDYLLGMTFWSLTMERKNELLKKRDDKMTELN 883
EDD A +E ED DYDYL+G+ L+ E KN+L+K+ ++KM E+
Sbjct: 709 EDDLAAVAVEEGEDISSAAKAVETKLSDYDYLVGLALIKLSEEEKNKLIKESEEKMAEVR 768
Query: 884 ILKKKAPTDLWSDDLD 899
+L+KK DLW DLD
Sbjct: 769 VLEKKTWQDLWITDLD 784
>gi|299741517|ref|XP_001834519.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
gi|298404747|gb|EAU87295.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
Length = 966
Score = 258 bits (658), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 126/252 (50%), Positives = 168/252 (66%), Gaps = 26/252 (10%)
Query: 40 SQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNK 99
+QLEHIL RPD+YIG++E I+ MW + ET M RE+ YVPG +KI DEILVNA DNK
Sbjct: 160 TQLEHILKRPDSYIGNIEIISTPMWTYDSETIRMVHREVKYVPGFFKIVDEILVNAADNK 219
Query: 100 QRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEED 159
DP M+ +KIT++ E TISV+NNG+GIP+ H EKM++P MIFGHLLTS+NY
Sbjct: 220 INDPSMDTLKITIDVEEGTISVYNNGRGIPIEIHSKEKMYIPEMIFGHLLTSTNY----- 274
Query: 160 KVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFK 219
+D+E K+TGGRNGYGAKL NI+S +F VET+ + +K
Sbjct: 275 --------------------DDDEKKLTGGRNGYGAKLANIYSLEFTVETADKNTSQKYK 314
Query: 220 QVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAST 278
Q W DNMSK +I ++ +++T+ITF PDL +F M S+++D V+L+ RR +D A +
Sbjct: 315 QTWTDNMSKCGKAKITKNTRGEEYTRITFRPDLKRFGMNSINEDTVNLLKRRVFDMADTV 374
Query: 279 KDVKVFLNGEKL 290
KDVKV LN E+L
Sbjct: 375 KDVKVLLNDERL 386
Score = 228 bits (581), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 108/179 (60%), Positives = 144/179 (80%), Gaps = 5/179 (2%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+ KL DAN+AGT+++ DCTLILTEGDSAK+LA++GLGVVGRD +GVFPLRGKLLNVREA
Sbjct: 465 LAKLSDANNAGTRHAQDCTLILTEGDSAKALAIAGLGVVGRDNFGVFPLRGKLLNVREAC 524
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
H Q+++N EI N+ KI+GLQ++K YT + +LRYGR+MIMTDQD DGSHIKGLIINF+
Sbjct: 525 HDQVMKNEEIQNIKKIMGLQHNKDYT---NTSSLRYGRVMIMTDQDHDGSHIKGLIINFL 581
Query: 575 HHNWPTLLRLP-FLEEFITPIIKATKAREEL-SFYSLPEFEEWKEETTNWHTYKIKYYK 631
H +P+LL++P FL EF+TP+ K ++ F+++PE+E+W EET + ++ KYYK
Sbjct: 582 DHLYPSLLKIPDFLVEFVTPLSGYVKKGNKVKDFFTIPEYEQWLEETPDARKWESKYYK 640
Score = 118 bits (295), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 78/112 (69%), Gaps = 2/112 (1%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWM--TKIPNHNPREIVDNIKRMIRGEDPLPMKPWYK 717
IEPEW++P +PMVL+NGAEGIGTG T IP +NP +IV NI+R ++GE+ PM PW++
Sbjct: 808 IEPEWHMPTVPMVLINGAEGIGTGSRLDTNIPPYNPIDIVANIRRKMKGEELEPMTPWWR 867
Query: 718 NFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHG 769
FKGE+ G ++ V G ++D +EI+EL + KWT +KD L+ ++ G
Sbjct: 868 GFKGEVRPPGKGKYDVVGVATKINDTTVEISELPIHKWTRTFKDDLEVMITG 919
>gi|395326357|gb|EJF58767.1| hypothetical protein DICSQDRAFT_128647 [Dichomitus squalens
LYAD-421 SS1]
Length = 385
Score = 256 bits (653), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 164/435 (37%), Positives = 224/435 (51%), Gaps = 105/435 (24%)
Query: 38 KKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACD 97
K SQ+EHI RPDT E+ YV +KI DEILVNA
Sbjct: 4 KLSQMEHIPKRPDT------------------------SEVKYVLEFFKIVDEILVNAAV 39
Query: 98 NKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDE 157
+K DP M IK+T++ E N ISV NNG+GIP+ H +E +++P +IFGHL SS+ +D
Sbjct: 40 HKINDPSMVIIKVTIDIENNMISVCNNGRGIPIEIHSEETIYIPELIFGHL--SSSEDDG 97
Query: 158 EDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKS 217
+ K K+TGGRNG GA L NI+S++F VET +
Sbjct: 98 KGK------------------------KLTGGRNGDGATLANIYSTEFTVETVDKITSQK 133
Query: 218 FKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
+ Q W +NM+KV +I K+ +++T++TF DL + M S+D D L+ +R YD A
Sbjct: 134 YVQTWTENMNKVGKAKITKNERGEEYTRVTFKSDLKRCGMKSIDDDAASLLEKRVYDLAG 193
Query: 277 STKDVKVFLNGEKLPVKNFQDYVKLYTDR------QDEDGDP---VKIIYENV-NPRWEV 326
+ KDVKVFLN E+L +KNF++YV+L+ D DG +I+E++ RWEV
Sbjct: 194 TVKDVKVFLNEEQLKIKNFKEYVELFVKSSAEAAANDTDGAAQLETCVIHESLAGGRWEV 253
Query: 327 AIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNK 386
A A SD FQQVSFVN I+T+KGG HV+ + D I + ++ V K
Sbjct: 254 ACAASDGAFQQVSFVNLISTSKGGTHVNHIADQITEHLVTAVAKNMAA------------ 301
Query: 387 FNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ 446
A +P Q+KNH+WIF NPTFDSQ KE +TL
Sbjct: 302 ------------------------AAARPAQIKNHMWIF------NPTFDSQAKETLTLP 331
Query: 447 KGSFGSTCVPKLEDA 461
FGS P+L +
Sbjct: 332 ASKFGSE--PRLSEV 344
>gi|395527122|ref|XP_003765700.1| PREDICTED: DNA repair protein REV1 [Sarcophilus harrisii]
Length = 1257
Score = 254 bits (649), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 145/363 (39%), Positives = 207/363 (57%), Gaps = 54/363 (14%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E V M +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 549 AYKE----VSRTMYETLASYTHNIEAVSCDEALVDITEILAETRLTPDEFANAIRTEIKD 604
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L ARLAT+KAKP+GQ+HL P+ + DF+ ++ LPGVG ++ KL
Sbjct: 605 QTKCAASVGMGSNILLARLATRKAKPDGQYHLKPEEVDDFIRGQLVTSLPGVGRTMESKL 664
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ I++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 665 ASLGIKTCGDLQYITMSKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 724
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL LA E+++RLE MKGK +TLK+MVR A AP E +KF GHG+CD +
Sbjct: 725 RFTQPKEAEAFLLSLAEEIQRRLEAAGMKGKRLTLKIMVRKAGAPVETAKFGGHGICDNV 784
Query: 2116 TKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL 2175
++ +L + P +++K +G
Sbjct: 785 ARTVTL-------------------DQPTDSAKIIG------------------------ 801
Query: 2176 KEVLFIVNKLKVDPVELRGIGIQVSKLEHQSKTLATIDTFFTNKGKPPDQLNNPRPGPSN 2235
K L + + +K++ ++RG+GIQV++L +KT + T P ++ PG S+
Sbjct: 802 KATLNMFHTMKLNISDMRGVGIQVNQLVPINKTSSGCSTH-------PSMQSSRLPGGSH 854
Query: 2236 STI 2238
S I
Sbjct: 855 SVI 857
Score = 152 bits (385), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/262 (36%), Positives = 139/262 (53%), Gaps = 47/262 (17%)
Query: 1512 TVKTKESKLETVNISAPKPQASS-TKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNEL 1570
TV+ S T ++ A ASS S+ +F+ +FY+ SRLHH+S ++VN L
Sbjct: 316 TVQGPSSTKSTSSVPAVSKAASSELSKPSDCNFISDFYSHSRLHHISMWKCELTEFVNTL 375
Query: 1571 REKHDGVFRGIEAIRKWKTS---LGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVS 1627
+ + GVF G E ++K K S L IT+ ++ +PS + IMH+DMDCFFVS
Sbjct: 376 QRQSSGVFPGREKLKKMKASRSALIITDAGNMSVL-----NPSRHQSCIMHVDMDCFFVS 430
Query: 1628 VGIRHHPELQDEPVAVAHGKGNS-SKVREGVDRQAEFDIYRQRTM-----NRM------- 1674
VGIR+ P+L+ +PVAV +G + +R G + Q E+ Y+ + + +R+
Sbjct: 431 VGIRNRPDLKGKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKILKGKAADRVPDVPDSS 490
Query: 1675 -----------GLNT--------------REYGLGNGMFVGHALKKCPNLKIVPYDFEGY 1709
G+++ R+ G+ NGMF G A + CPNL+ VPYDF Y
Sbjct: 491 LLDNQDSAQANGIDSVLSKAEIASCSYEARQVGIKNGMFFGQAKQLCPNLQAVPYDFHAY 550
Query: 1710 KEVSYCLYNLIASLTLNIEAVS 1731
KEVS +Y +AS T NIEAVS
Sbjct: 551 KEVSRTMYETLASYTHNIEAVS 572
Score = 136 bits (343), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 90/129 (69%), Gaps = 15/129 (11%)
Query: 1316 KKKGGYMEAKKRKLEEQFELEAN--SDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAE 1373
+K GGYM AK +KLEEQF +A D IF GVAI+VNGYT PSAE
Sbjct: 16 RKWGGYMAAKVQKLEEQFRSDAGLQKDGTSTIFSGVAIYVNGYTD-----------PSAE 64
Query: 1374 ELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL 1432
EL+ LMMLHGG YH +Y S+TTHIIA+NL + KI++LK G+K+I+PEWIV+SI AG+LL
Sbjct: 65 ELRKLMMLHGGQYHVYYSRSKTTHIIATNLTNAKIRELK-GEKVIRPEWIVESIKAGRLL 123
Query: 1433 DHKKYLLYT 1441
+ Y LYT
Sbjct: 124 SYIPYQLYT 132
Score = 50.1 bits (118), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+L+EW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1165 LAGAVEFNDVKTLLKEWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1224
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1225 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1256
>gi|15078758|ref|NP_149508.1| 045L [Invertebrate iridescent virus 6]
gi|82039172|sp|Q9QSK1.1|TOP2_IIV6 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
II
gi|5725647|gb|AAD48151.1|AF083915_5 045L [Invertebrate iridescent virus 6]
Length = 1132
Score = 254 bits (648), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 194/674 (28%), Positives = 314/674 (46%), Gaps = 132/674 (19%)
Query: 33 EKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEIL 92
+K Y S ++H+LLRP+ IGS P+ +T ++++ + + +++ L +IF E+L
Sbjct: 7 KKQYTTLSDIDHVLLRPEVIIGSTVPMEQTEYVVDENFSEILEKQVFVSEALIRIFVEVL 66
Query: 93 VNACDNKQRDPKMNC----IKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
NA DN R + IKI + + T+ + N+G+ I + + +++ + +
Sbjct: 67 ANAVDNIHRSKGSSTPCKSIKIKIEDDGTTM-IHNDGQVIKISKEENDGIEINGK----- 120
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
S YN E ++FGHL +SSNY+D + T G+NG G K NI S F V
Sbjct: 121 -KCSVYNHE----------LVFGHLRSSSNYDDTVVRQTSGKNGLGVKCTNILSKSFKVI 169
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIK-SGSKDDFTKITFTPDLTKFKMTSLDKDMVDLI 267
E KK F Q W +NM + + P++ S SK +T++ + PD + + + D++ +
Sbjct: 170 GVDPENKKKFVQEWTNNMKETSGPKVTTSSSKTGYTEVIYCPDFER--LGNFSSDIIGIF 227
Query: 268 TRRAYDAA--ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWE 325
+ D A AS++ V V+ N +KLP+K F DY KL+ ++ + I E+ +
Sbjct: 228 RKHVLDVAMLASSEGVSVYFNDKKLPIKKFSDYTKLFKLEKES----ISITEEDGSSEVT 283
Query: 326 VAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
+A D + +SFVN + T +H VD K
Sbjct: 284 IAFVERDGKKKPISFVNGLFT----KHGGQHVDGWTKPF--------------------- 318
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT- 444
F N+ + + +KT D+ + L V + F+ + P FD Q K +
Sbjct: 319 -FANLLSVLNKPSKTYKDLKLSLK-------DVTPYFRFFVKSTVDKPQFDCQNKNMLKS 370
Query: 445 -----------------------LQKGSF-------GSTCVPKLED-------------- 460
L++ SF + + L D
Sbjct: 371 PCLKYTIPDKIITKVCKWTSVQELKQSSFEKLLKGKDNNIIKTLNDKKRRPKVSVKEYDP 430
Query: 461 ANDAGTKNSIDCTLILTEGDSAKSLAVSGLGV----------VGRDKYGVFPLRGKLLNV 510
AN AGT S CTLI+ EG SAK+ AV+G+ GRD +G+ PLRGK LNV
Sbjct: 431 ANKAGTTLSEKCTLIVCEGLSAKTYAVAGISTGISFTGTDTKKGRDWFGILPLRGKFLNV 490
Query: 511 REATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLI 570
R A + ++++N + +LV +GL + Y+T + K+L YG ++I+ D D+DG HI+GL+
Sbjct: 491 RNANNDKMIKNTVVTDLVNAMGLTFGMDYSTQKSRKSLNYGSIIIIPDPDEDGIHIEGLV 550
Query: 571 INFIHHNW--------PTLLRLPFLEEFITPIIKAT----KAREELSFYSLPEFEEWKEE 618
+NF HH++ P L PF+ PIIK K R E+ F++ F ++K E
Sbjct: 551 LNFFHHHFSSLFNPVVPNLKDFPFISSMKIPIIKVIEKPLKGRREIEFFTHEAFHKFKNE 610
Query: 619 TTNWH-TYKIKYYK 631
WH ++IKY+K
Sbjct: 611 -NKWHKNHEIKYFK 623
Score = 81.3 bits (199), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 65/113 (57%), Gaps = 9/113 (7%)
Query: 661 EPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMI----RGED-PLPMKPW 715
EP +Y P+IP++ +NG+ G+GTG+ IP NP EI+D +K+ I +GE KPW
Sbjct: 831 EPVFYAPVIPLICINGSVGVGTGFSCNIPMFNPSEIIDGLKQWINMREQGEKYVFKYKPW 890
Query: 716 YKNFKGEIDYCGDSRFVVNGEIAILDDD----KLEITELQVGKWTTDYKDTLD 764
YK F G+I+ G R++ G ++ + + ++EL + WT +K+ D
Sbjct: 891 YKGFTGKIEKNGSGRYISYGTLSNEASNNGMYQYTVSELPINMWTDKFKEMCD 943
>gi|224042968|ref|XP_002196514.1| PREDICTED: DNA repair protein REV1 [Taeniopygia guttata]
Length = 1255
Score = 253 bits (646), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 140/340 (41%), Positives = 200/340 (58%), Gaps = 47/340 (13%)
Query: 1875 EAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIA 1934
+AY+E+ V + +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 554 DAYKEVARTVYEIL----ASYTHNIEAVSCDEALVDITEILTETRLTPDEFANAIRTEIK 609
Query: 1935 KETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFK 1994
+T CT S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ ++ LPGVG ++ K
Sbjct: 610 DQTKCTASVGMGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTSLPGVGRTMESK 669
Query: 1995 LNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYG 2054
L SLG +TCGDLQ S+ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYG
Sbjct: 670 LASLGIKTCGDLQCASMSKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYG 729
Query: 2055 IRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDY 2114
IRF +E E FL L+ E+++RLE MKGK +TLK+MVR A AP E +K+ GHG+CD
Sbjct: 730 IRFTQPKEAEAFLLSLSEEIQRRLEAAGMKGKRLTLKIMVRKAGAPVEPAKYGGHGICDN 789
Query: 2115 ITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQI 2174
I ++ +L D+ T S+ + I
Sbjct: 790 IARTVTL----------------------------------DHATDSAKV---------I 806
Query: 2175 LKEVLFIVNKLKVDPVELRGIGIQVSKLEHQSKTLATIDT 2214
KE L + + +K++ ++RG+GIQV +L SKT + + T
Sbjct: 807 GKETLNMFHTMKLNISDMRGVGIQVQQLVPISKTTSALST 846
Score = 159 bits (401), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 136/272 (50%), Gaps = 54/272 (19%)
Query: 1501 SEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMG 1560
S P +K T SK ++ +S P S+ F+ +FY++SRLHH+ST
Sbjct: 320 STVQGPSSTKSTSGPAPSKAASLPVSKP----------SDCSFISDFYSRSRLHHISTWK 369
Query: 1561 SMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHID 1620
++VN L+ K+ GVF G E I+KWKT + + + + S ++P+ IMH+D
Sbjct: 370 CELTEFVNSLQRKNSGVFPGREKIKKWKTGRSALKTDTGNVSVA---SSAKPQSCIMHVD 426
Query: 1621 MDCFFVSVGIRHHPELQDEPVAVAHGKGNS-SKVREGVDRQAEFDIYRQRTMN------- 1672
MDCFFVSV IR+ P+L+ +PVAV +G + +R G + Q E Y+++ +N
Sbjct: 427 MDCFFVSVAIRNRPDLKGKPVAVTSNRGTGKALLRPGANPQLEQQYYQKKLLNGKAEIRV 486
Query: 1673 ---------------------------------RMGLNTREYGLGNGMFVGHALKKCPNL 1699
R+ G+ NGMF G A K CPNL
Sbjct: 487 PDQLDSSVWENTDSTHVNGADFNLTVLSMAEIASCSYEARQVGIKNGMFFGQAKKLCPNL 546
Query: 1700 KIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
+ V YDF+ YKEV+ +Y ++AS T NIEAVS
Sbjct: 547 QAVSYDFDAYKEVARTVYEILASYTHNIEAVS 578
Score = 127 bits (319), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/127 (55%), Positives = 87/127 (68%), Gaps = 18/127 (14%)
Query: 1321 YMEAKKRKLEEQFELE-ANSDSRGG----IFQGVAIFVNGYTKHCMMLDAYYIVPSAEEL 1375
YM AK +KLE+QF + A R G IF GVAI+VNG T PSA+EL
Sbjct: 22 YMSAKVKKLEDQFRSDSAIQQQRDGNSSSIFSGVAIYVNGLTD-----------PSADEL 70
Query: 1376 KALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDH 1434
+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+++PEWIV+SI AG+LL H
Sbjct: 71 RRLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVVRPEWIVESIKAGRLLSH 129
Query: 1435 KKYLLYT 1441
Y LYT
Sbjct: 130 IPYQLYT 136
Score = 50.1 bits (118), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+L+EW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1163 LAGAVEFNDVKTLLKEWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVVKYMKRLMQ 1222
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKIV 1899
+VW A+ +L VQ ++ S K++
Sbjct: 1223 SSVESVWNMAFDFILDNVQVVLQQTYGSTLKVI 1255
>gi|126337177|ref|XP_001363717.1| PREDICTED: DNA repair protein REV1 [Monodelphis domestica]
Length = 1254
Score = 251 bits (640), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 144/363 (39%), Positives = 207/363 (57%), Gaps = 54/363 (14%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E V M +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 551 AYKE----VARTMYETLASYTHNIEAVSCDEALVDITEILAETRLTPDEFANAIRTEIKD 606
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ ++ LPGVG ++ KL
Sbjct: 607 QTKCAASVGMGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTSLPGVGRTMESKL 666
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ I++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 667 ASLGIKTCGDLQYITMSKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 726
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR A AP E +KF GHG+CD I
Sbjct: 727 RFTQPKEAEAFLLSLSEEIQRRLEAAGMKGKRLTLKIMVRKAGAPVETAKFGGHGICDNI 786
Query: 2116 TKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL 2175
++ +L + P +++K +G
Sbjct: 787 ARTVTL-------------------DQPTDSAKIIG------------------------ 803
Query: 2176 KEVLFIVNKLKVDPVELRGIGIQVSKLEHQSKTLATIDTFFTNKGKPPDQLNNPRPGPSN 2235
K L + + +K++ ++RG+GIQV++L +KT + T P ++ PG S+
Sbjct: 804 KAALNMFHTMKLNISDMRGVGIQVNQLVPINKTSSGCSTH-------PCMQSSRLPGGSH 856
Query: 2236 STI 2238
S I
Sbjct: 857 SVI 859
Score = 152 bits (385), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 140/262 (53%), Gaps = 47/262 (17%)
Query: 1512 TVKTKESKLETVNISAPKPQASST-KNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNEL 1570
TV+ S T ++ A ASS S+ +F+ +FY++SRLHH+S ++VN L
Sbjct: 318 TVQGPSSTKSTSSLPAVSKAASSALSKPSDCNFISDFYSRSRLHHISMWKCELTEFVNTL 377
Query: 1571 REKHDGVFRGIEAIRKWKTS---LGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVS 1627
+ + GVF G E ++K K S L IT+ ++ +PS + IMH+DMDCFFVS
Sbjct: 378 QRQSSGVFPGREKLKKMKASRSALIITDAGNMSVL-----NPSRHQSCIMHVDMDCFFVS 432
Query: 1628 VGIRHHPELQDEPVAVAHGKGNS-SKVREGVDRQAEFDIYRQRTM-----NRM------- 1674
VGIR+ P+L+ +PVAV +G + +R G + Q E+ Y+ + + +R+
Sbjct: 433 VGIRNRPDLKGKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKILKGKAADRVPDVPDAS 492
Query: 1675 -----------GLNT--------------REYGLGNGMFVGHALKKCPNLKIVPYDFEGY 1709
G+++ R+ G+ NGMF G A + CPNL+ VPYDF Y
Sbjct: 493 LLENQDSAQTNGIDSVLSKAEIASCSYEARQVGIKNGMFFGQAKQLCPNLQAVPYDFHAY 552
Query: 1710 KEVSYCLYNLIASLTLNIEAVS 1731
KEV+ +Y +AS T NIEAVS
Sbjct: 553 KEVARTMYETLASYTHNIEAVS 574
Score = 139 bits (349), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 90/129 (69%), Gaps = 16/129 (12%)
Query: 1317 KKGGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSAE 1373
K GGYM AK +KLEEQF +A G IF GVAI+VNGYT PSAE
Sbjct: 17 KWGGYMAAKVQKLEEQFRSDAALQKEGTPSTIFSGVAIYVNGYTD-----------PSAE 65
Query: 1374 ELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL 1432
EL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+LL
Sbjct: 66 ELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRLL 124
Query: 1433 DHKKYLLYT 1441
+ Y LYT
Sbjct: 125 SYIPYQLYT 133
Score = 49.3 bits (116), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+L+EW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1162 LAGAVEFNDVKTLLKEWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1221
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1222 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1253
>gi|345307750|ref|XP_001507264.2| PREDICTED: DNA repair protein REV1 [Ornithorhynchus anatinus]
Length = 1375
Score = 251 bits (640), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 140/333 (42%), Positives = 195/333 (58%), Gaps = 47/333 (14%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E V M +S + + AVSCDE VD +++L E SLTP +FA LR I
Sbjct: 555 AYKE----VSRTMYETLASYTHNIEAVSCDEALVDITEILAETSLTPDEFADALRTEIKD 610
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T CT S G GSN L ARLAT+KAKP+GQ+HL P+ + DF+ +++LPGVG S+ KL
Sbjct: 611 QTKCTASVGMGSNILLARLATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGRSMESKL 670
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 671 ASLGIKTCGDLQYMTMSKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 730
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL +L+ E+++RLE MKG+ +TLK+MVR A AP E +KF GHG+CD I
Sbjct: 731 RFTQPKEAEAFLLRLSEEIQRRLEAAGMKGRRLTLKIMVRKAGAPVEPAKFGGHGICDNI 790
Query: 2116 TKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL 2175
++ + D T S+ + I
Sbjct: 791 ARTV----------------------------------ILDQATDSAKI---------IG 807
Query: 2176 KEVLFIVNKLKVDPVELRGIGIQVSKLEHQSKT 2208
K L + + +KV+ ++RG+GI V++L SK+
Sbjct: 808 KATLNMFHTMKVNISDMRGVGILVNQLVPISKS 840
Score = 151 bits (382), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 124/241 (51%), Gaps = 46/241 (19%)
Query: 1533 SSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT--S 1590
S+ S+ +F+ FY++SRLHHLST ++VN L+ + GVF G E ++K K S
Sbjct: 342 STPPRPSDGNFISNFYSRSRLHHLSTWKCELTEFVNTLQRQSSGVFPGREKLKKLKAGRS 401
Query: 1591 LGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAV-AHGKGN 1649
+ D S SP + IMH+DMDCFFVSVGIR+ P+L+ +PVAV +H G
Sbjct: 402 AFVVTDTGNVSVLS---SPRH-QSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSHRGGG 457
Query: 1650 SSKVREGVDRQAEFDIYRQRTM------------------------NRMGLN-------- 1677
+ +R G + Q E+ Y+ + N + L+
Sbjct: 458 RAPLRPGTNPQLEWQYYQNKIQKGKADKVPDLLDSSMWESQDSALTNGIDLDGTVLSKAE 517
Query: 1678 -------TREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAV 1730
R+ G+ NGMF G A K CPNL+ VPYDF YKEVS +Y +AS T NIEAV
Sbjct: 518 IASCSYEARQVGIKNGMFFGQAKKLCPNLQAVPYDFHAYKEVSRTMYETLASYTHNIEAV 577
Query: 1731 S 1731
S
Sbjct: 578 S 578
Score = 134 bits (337), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 72/133 (54%), Positives = 89/133 (66%), Gaps = 16/133 (12%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRG---GIFQGVAIFVNGYTKHCMMLDAYYIVPSAEEL 1375
GGYM AK +KLEEQF +A G IF GV+I+VNGYT PSA+EL
Sbjct: 19 GGYMAAKVQKLEEQFRSDAALQKDGTSTAIFSGVSIYVNGYTD-----------PSADEL 67
Query: 1376 KALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDH 1434
+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+++PEWIV+SI AG+LL
Sbjct: 68 RKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVVRPEWIVESIKAGRLLPS 126
Query: 1435 KKYLLYTGTDAKP 1447
Y LYT P
Sbjct: 127 IPYQLYTKQPGVP 139
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 79/161 (49%), Gaps = 20/161 (12%)
Query: 1741 ALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQ-DIICADSHTLVRTPSPSPILDMSTSI 1799
A+P Q+++D +Q + + T EP+A + + + + R P+P+
Sbjct: 1233 AIPCGSPQKLIDGFLKQDGTTASKPQT-EPVASTSTVPSPTASQPRPPAPN--------- 1282
Query: 1800 LDTTTSHILSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILL 1858
L+ V +++T+LREW+ S P DI +Y ++L+EE+ L + +++
Sbjct: 1283 --------LAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVI 1334
Query: 1859 RFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIV 1899
++++R + + +VW A+ +L VQ ++ S K++
Sbjct: 1335 KYMKRLMQQSVESVWNMAFDFILDNVQVVLQQTYGSTLKVI 1375
>gi|395843201|ref|XP_003794384.1| PREDICTED: DNA repair protein REV1 [Otolemur garnettii]
Length = 1251
Score = 250 bits (639), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 193/327 (59%), Gaps = 47/327 (14%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E V M +S + + AVSCDE VD +++L E LTP +FAS +R I
Sbjct: 542 AYKE----VARTMYETLASYTHNIEAVSCDEALVDITEILAETRLTPDEFASAIRMEIKD 597
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVGHS+ KL
Sbjct: 598 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGHSMESKL 657
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKS+SAE+NYGI
Sbjct: 658 TSLGIKTCGDLQCMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSISAEINYGI 717
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR AP E +KF GHG+CD I
Sbjct: 718 RFTQPREAEAFLLSLSEEIQRRLEAAGMKGKRLTLKIMVRKPGAPIETAKFGGHGICDNI 777
Query: 2116 TKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL 2175
T++ +L D T S+ + I
Sbjct: 778 TRTVTL----------------------------------DQATDSAKI---------IG 794
Query: 2176 KEVLFIVNKLKVDPVELRGIGIQVSKL 2202
K L + + +K++ ++RG+GIQV++L
Sbjct: 795 KATLNMFHTMKLNISDMRGVGIQVNQL 821
Score = 152 bits (383), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 149/294 (50%), Gaps = 44/294 (14%)
Query: 1475 HTSTVSDSVDNTEESKSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAP-KPQAS 1533
++T +D++ N + S +++S S ++ S TV+ S T ++ P K S
Sbjct: 279 QSTTNTDALRNPHRTNSFSLSSLHSNTKINGAHHS--TVQGPSSTKSTSSVPTPSKAVPS 336
Query: 1534 STKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT---S 1590
S+ F+ +FY +SRLHH+S ++VN L+ + G+F G E ++K KT +
Sbjct: 337 VPSKPSDCSFISDFYARSRLHHISMWKCELTEFVNTLQRQSSGIFPGREKLKKMKTGRSA 396
Query: 1591 LGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS 1650
L +T+ T S SP + IMH+DMDCFFVSVGIR+ P+L+ +PVAV +G
Sbjct: 397 LVVTDTG----TVSVLSSPRH-QSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTG 451
Query: 1651 -SKVREGVDRQAEFDIYRQRTMN--------------------------------RMGLN 1677
+ +R G + Q E+ Y+ + +
Sbjct: 452 RAPLRPGANPQLEWQYYQNKILKGRADIPDSSMWENQDSAQINGIDSVLSRAEIASCSYE 511
Query: 1678 TREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
R+ G+ NGMF GHA + CP+L+ VPYDF YKEV+ +Y +AS T NIEAVS
Sbjct: 512 ARQVGIKNGMFFGHAKQLCPSLQAVPYDFHAYKEVARTMYETLASYTHNIEAVS 565
Score = 133 bits (334), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/125 (57%), Positives = 87/125 (69%), Gaps = 16/125 (12%)
Query: 1321 YMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
YM AK +KLEEQF +A G IF GVAI+VNGYT PSAEEL+
Sbjct: 21 YMAAKVQKLEEQFRSDAAMQKDGTSSTIFSGVAIYVNGYTD-----------PSAEELRK 69
Query: 1378 LMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKK 1436
LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+LL +
Sbjct: 70 LMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRLLSYIP 128
Query: 1437 YLLYT 1441
Y LYT
Sbjct: 129 YQLYT 133
Score = 48.9 bits (115), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+L+EW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1159 LAGAVEFNDVKTLLKEWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1218
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1219 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1250
>gi|326912601|ref|XP_003202637.1| PREDICTED: DNA repair protein REV1-like [Meleagris gallopavo]
Length = 1255
Score = 250 bits (638), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 139/333 (41%), Positives = 197/333 (59%), Gaps = 47/333 (14%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E+ V + +S + + AVSCDE VD +++L E LTP + A+ +R+ I
Sbjct: 556 AYKEVAQTVYEIL----ASYTHNIEAVSCDEALVDITEILTETRLTPDELANAIRDEIKA 611
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T CT S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVG S+ KL
Sbjct: 612 QTKCTASVGMGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGRSMESKL 671
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ S+ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 672 ASLGIRTCGDLQCASMSKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 731
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR A AP E +K+ GHG+CD I
Sbjct: 732 RFTQPKEAEAFLLSLSEEIQRRLEAAGMKGKRLTLKIMVRKAGAPVEPAKYGGHGICDNI 791
Query: 2116 TKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL 2175
++ +L D+ T S+ + I
Sbjct: 792 ARTVTL----------------------------------DHATDSAKV---------IG 808
Query: 2176 KEVLFIVNKLKVDPVELRGIGIQVSKLEHQSKT 2208
KE L + + +K++ ++RG+GIQV +L SKT
Sbjct: 809 KETLNMFHTMKLNISDMRGVGIQVQQLVPISKT 841
Score = 159 bits (402), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 131/256 (51%), Gaps = 45/256 (17%)
Query: 1518 SKLETVNISAPKPQAS-STKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDG 1576
S ++ ++ AP AS S +S+ F+ +FY++SRLHH+ST ++VN L+ K+ G
Sbjct: 327 SSTKSTSVPAPSKTASLSVSKSSDCSFISDFYSRSRLHHISTWKCELTEFVNSLQRKNSG 386
Query: 1577 VFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPEL 1636
VF G E ++KWK + + S ++P+ IMH+DMDCFFVSV IR+ P+L
Sbjct: 387 VFPGREKLKKWKAGRSALKT---DTGIVSVASSAKPQSCIMHVDMDCFFVSVAIRNRPDL 443
Query: 1637 QDEPVAVAHGKG-NSSKVREGVDRQAEFDIYRQRTMN----------------------- 1672
+ +PVAV +G + +R G + Q E+ Y+ + +N
Sbjct: 444 KGKPVAVTSNRGAGKAPLRPGANPQLEWQYYQNKLLNGKAEIRIPDKLDSSVWEHSDSAH 503
Query: 1673 -----------------RMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYC 1715
R+ G+ NGMF G A K CPNL+ V YDF YKEV+
Sbjct: 504 MNGVDCDLTVLSMAEIASCSYEARQAGIKNGMFFGQAKKLCPNLQAVSYDFNAYKEVAQT 563
Query: 1716 LYNLIASLTLNIEAVS 1731
+Y ++AS T NIEAVS
Sbjct: 564 VYEILASYTHNIEAVS 579
Score = 127 bits (320), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/130 (53%), Positives = 89/130 (68%), Gaps = 24/130 (18%)
Query: 1321 YMEAKKRKLEEQF--------ELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
YM AK +KLE+QF + + NS S IF GVAI+VNG+T PSA
Sbjct: 22 YMSAKVKKLEDQFRSDSAIQHQRDGNSSS---IFSGVAIYVNGFTD-----------PSA 67
Query: 1373 EELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKL 1431
+EL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+++PEWI++SI AG+L
Sbjct: 68 DELRRLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVVRPEWIMESIKAGRL 126
Query: 1432 LDHKKYLLYT 1441
L H Y LYT
Sbjct: 127 LSHIPYQLYT 136
Score = 50.1 bits (118), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+L+EW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1163 LAGAVEFNDVKTLLKEWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVVKYMKRLMQ 1222
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKIV 1899
+VW A+ +L VQ ++ S K++
Sbjct: 1223 SSVESVWNMAFDFILDNVQVVLQQTYGSTLKVI 1255
>gi|123904897|sp|Q4KWZ7.1|REV1_CHICK RecName: Full=DNA repair protein REV1; AltName: Full=Rev1-like
terminal deoxycytidyl transferase
gi|56178121|gb|AAV80844.1| REV1 protein [Gallus gallus]
Length = 1255
Score = 249 bits (637), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 139/333 (41%), Positives = 197/333 (59%), Gaps = 47/333 (14%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E+ V + +S + + AVSCDE VD +++L E LTP + A+ +R+ I
Sbjct: 556 AYKEVAQTVYEIL----ASYTHNIEAVSCDEALVDITEILTETRLTPDELANAIRDEIKA 611
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T CT S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVG S+ KL
Sbjct: 612 QTKCTASVGMGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGRSMESKL 671
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ S+ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 672 ASLGIRTCGDLQCASMSKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 731
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR A AP E +K+ GHG+CD I
Sbjct: 732 RFTQPKEAEAFLLSLSEEIQRRLEAAGMKGKRLTLKIMVRKAGAPVEPAKYGGHGICDNI 791
Query: 2116 TKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL 2175
++ +L D+ T S+ + I
Sbjct: 792 ARTVTL----------------------------------DHATDSAKV---------IG 808
Query: 2176 KEVLFIVNKLKVDPVELRGIGIQVSKLEHQSKT 2208
KE L + + +K++ ++RG+GIQV +L SKT
Sbjct: 809 KETLNMFHTMKLNISDMRGVGIQVQQLVPISKT 841
Score = 157 bits (397), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 135/272 (49%), Gaps = 54/272 (19%)
Query: 1501 SEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMG 1560
S P +K T SK ++++S P S+ F+ +FY++SRLHH+ST
Sbjct: 321 STVQGPSSTKSTSVPTPSKAASLSVSKP----------SDCSFISDFYSRSRLHHISTWK 370
Query: 1561 SMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHID 1620
++VN L+ K+ GVF G E ++KWK + + + + S ++P+ IMH+D
Sbjct: 371 CELTEFVNSLQRKNSGVFPGREKLKKWKAGRSALKTDTGNVSVA---SSAKPQSCIMHVD 427
Query: 1621 MDCFFVSVGIRHHPELQDEPVAVAHGKG-NSSKVREGVDRQAEFDIYRQRTMN------- 1672
MDCFFVSV IR+ P+L+ +PVAV +G + +R G + Q E+ Y+ + +N
Sbjct: 428 MDCFFVSVAIRNRPDLKGKPVAVTSNRGAGKAPLRPGANPQLEWQYYQNKLLNGKAEIRI 487
Query: 1673 ---------------------------------RMGLNTREYGLGNGMFVGHALKKCPNL 1699
R+ G+ NGMF G A K CPNL
Sbjct: 488 PDKLDSLVWEHSDSAHMNGVDCDLTVLSMAEIASCSYEARQAGIKNGMFFGQAKKLCPNL 547
Query: 1700 KIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
+ V YDF YKEV+ +Y ++AS T NIEAVS
Sbjct: 548 QAVSYDFNAYKEVAQTVYEILASYTHNIEAVS 579
Score = 129 bits (323), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/130 (53%), Positives = 89/130 (68%), Gaps = 24/130 (18%)
Query: 1321 YMEAKKRKLEEQF--------ELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
YM AK +KLE+QF + + NS S IF GVAI+VNG+T PSA
Sbjct: 22 YMSAKVKKLEDQFRSDSAIQHQRDGNSSS---IFSGVAIYVNGFTD-----------PSA 67
Query: 1373 EELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKL 1431
+EL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+++PEWIV+SI AG+L
Sbjct: 68 DELRRLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVVRPEWIVESIKAGRL 126
Query: 1432 LDHKKYLLYT 1441
L H Y LYT
Sbjct: 127 LSHIPYQLYT 136
Score = 49.7 bits (117), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+L+EW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1163 LAGAVEFNDVKTLLKEWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVVKYMKRLMQ 1222
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKIV 1899
+VW A+ +L VQ ++ S K++
Sbjct: 1223 SSVESVWNMAFDFILDNVQVVLQQTYGSTLKVI 1255
>gi|98162787|ref|NP_001025982.2| DNA repair protein REV1 [Gallus gallus]
Length = 1255
Score = 249 bits (637), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 139/333 (41%), Positives = 197/333 (59%), Gaps = 47/333 (14%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E+ V + +S + + AVSCDE VD +++L E LTP + A+ +R+ I
Sbjct: 556 AYKEVAQTVYEIL----ASYTHNIEAVSCDEALVDITEILTETRLTPDELANAIRDEIKA 611
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T CT S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVG S+ KL
Sbjct: 612 QTKCTASVGMGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGRSMESKL 671
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ S+ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 672 ASLGIRTCGDLQCASMSKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 731
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR A AP E +K+ GHG+CD I
Sbjct: 732 RFTQPKEAEAFLLSLSEEIQRRLEAAGMKGKRLTLKIMVRKAGAPVEPAKYGGHGICDNI 791
Query: 2116 TKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL 2175
++ +L D+ T S+ + I
Sbjct: 792 ARTVTL----------------------------------DHATDSAKV---------IG 808
Query: 2176 KEVLFIVNKLKVDPVELRGIGIQVSKLEHQSKT 2208
KE L + + +K++ ++RG+GIQV +L SKT
Sbjct: 809 KETLNMFHTMKLNISDMRGVGIQVQQLVPISKT 841
Score = 157 bits (397), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 135/272 (49%), Gaps = 54/272 (19%)
Query: 1501 SEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMG 1560
S P +K T SK ++++S P S+ F+ +FY++SRLHH+ST
Sbjct: 321 STVQGPSSTKSTSVPTPSKAASLSVSKP----------SDCSFISDFYSRSRLHHISTWK 370
Query: 1561 SMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHID 1620
++VN L+ K+ GVF G E ++KWK + + + + S ++P+ IMH+D
Sbjct: 371 CELTEFVNSLQRKNSGVFPGREKLKKWKAGRSALKTDTGNVSVA---SSAKPQSCIMHVD 427
Query: 1621 MDCFFVSVGIRHHPELQDEPVAVAHGKG-NSSKVREGVDRQAEFDIYRQRTMN------- 1672
MDCFFVSV IR+ P+L+ +PVAV +G + +R G + Q E+ Y+ + +N
Sbjct: 428 MDCFFVSVAIRNRPDLKGKPVAVTSNRGAGKAPLRPGANPQLEWQYYQNKLLNGKAEIRI 487
Query: 1673 ---------------------------------RMGLNTREYGLGNGMFVGHALKKCPNL 1699
R+ G+ NGMF G A K CPNL
Sbjct: 488 PDKLDSWVWEHSDSAHMNGVDCDLTVLSMAEIASCSYEARQAGIKNGMFFGQAKKLCPNL 547
Query: 1700 KIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
+ V YDF YKEV+ +Y ++AS T NIEAVS
Sbjct: 548 QAVSYDFNAYKEVAQTVYEILASYTHNIEAVS 579
Score = 129 bits (323), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/130 (53%), Positives = 89/130 (68%), Gaps = 24/130 (18%)
Query: 1321 YMEAKKRKLEEQF--------ELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
YM AK +KLE+QF + + NS S IF GVAI+VNG+T PSA
Sbjct: 22 YMSAKVKKLEDQFRSDSAIQHQRDGNSSS---IFSGVAIYVNGFTD-----------PSA 67
Query: 1373 EELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKL 1431
+EL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+++PEWIV+SI AG+L
Sbjct: 68 DELRRLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVVRPEWIVESIKAGRL 126
Query: 1432 LDHKKYLLYT 1441
L H Y LYT
Sbjct: 127 LSHIPYQLYT 136
Score = 49.7 bits (117), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+L+EW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1163 LAGAVEFNDVKTLLKEWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVVKYMKRLMQ 1222
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKIV 1899
+VW A+ +L VQ ++ S K++
Sbjct: 1223 SSVESVWNMAFDFILDNVQVVLQQTYGSTLKVI 1255
>gi|260825995|ref|XP_002607951.1| hypothetical protein BRAFLDRAFT_213587 [Branchiostoma floridae]
gi|229293301|gb|EEN63961.1| hypothetical protein BRAFLDRAFT_213587 [Branchiostoma floridae]
Length = 1191
Score = 249 bits (636), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 133/330 (40%), Positives = 192/330 (58%), Gaps = 51/330 (15%)
Query: 1873 WAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRET 1932
+ E QEM + +S + + AVSCDE +VD + +L + TP A+ LR+
Sbjct: 505 YKEVAQEMYGIL--------ASYTHEIEAVSCDEAFVDVTDILADTGATPDDLATVLRKE 556
Query: 1933 IAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLL 1992
I ++T C S G S+ L AR+ATK+AKPNGQF+L P+ + DF+ + +LPGVG SL
Sbjct: 557 ILEKTQCPASVGLASSVLLARMATKRAKPNGQFYLPPEEVLDFVSPQTVRELPGVGRSLE 616
Query: 1993 FKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVN 2052
+L +G TCGDLQ ++L LQ E G K G LY+ CRG+DD++L E +RKSVSAE+N
Sbjct: 617 SRLKVMGVVTCGDLQKVTLPTLQREFGPKTGQALYRSCRGQDDRQLKVERERKSVSAEIN 676
Query: 2053 YGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVC 2112
YGIRF + E ETF+ LA EV++RL++ +KGK +TLK+M R A+AP E SKF+GHG+C
Sbjct: 677 YGIRFTKDTEAETFMYNLAEEVQRRLQKAGLKGKTVTLKVMARKADAPVEPSKFMGHGIC 736
Query: 2113 DYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQAS 2172
D ++KSS+L + + K +G
Sbjct: 737 DSLSKSSTLGLAT-------------------DDHKVIG--------------------- 756
Query: 2173 QILKEVLFIVNKLKVDPVELRGIGIQVSKL 2202
KE I+ ++K+ P + RG+GIQ+++L
Sbjct: 757 ---KEAWNILCQMKLLPSDNRGLGIQITRL 783
Score = 171 bits (433), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 114/313 (36%), Positives = 167/313 (53%), Gaps = 65/313 (20%)
Query: 1484 DNTEESKSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDF 1543
D+T+++ S NS S +++ ++ + SKL + S KP SS + +F
Sbjct: 268 DDTQDANSYHDNSVHGDSLSSSTVQQQPL-----SKLVHTSPSGKKPMGSS----KDANF 318
Query: 1544 LGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETF 1603
+ EFY+ SRLHHLST + F+ YVN L+ K D F G + +R S E
Sbjct: 319 VAEFYDNSRLHHLSTWRTDFQAYVNVLQGKGDNGFPGRQRLRDHLQSRP-------EPAT 371
Query: 1604 SDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAH--GKGNSSKVREGVDRQA 1661
DN S+ V+MH+DMDCFFVSVG+R+HP L+ +PVAV H GKG+ K+R G+D +
Sbjct: 372 DDN---SDRIKVVMHLDMDCFFVSVGLRNHPNLRGKPVAVTHSKGKGHEQKIRPGMDPEY 428
Query: 1662 EFDIYRQRTMNRMGLN-----------------------------TREYGLGNGMFVGHA 1692
E + +R +R + R+ G+ NGMF+G A
Sbjct: 429 ERAYWEKRAPHRHSITDKTEDNATRGNAQRDTYMSFSEIASCSYEARKAGVKNGMFMGPA 488
Query: 1693 LKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLN---------ALP 1743
LK CP+LK +PYDFEGYKEV+ +Y ++AS T IEAVS +E+F++ A P
Sbjct: 489 LKLCPDLKTIPYDFEGYKEVAQEMYGILASYTHEIEAVSC--DEAFVDVTDILADTGATP 546
Query: 1744 ED----IRQEVLD 1752
+D +R+E+L+
Sbjct: 547 DDLATVLRKEILE 559
Score = 104 bits (260), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 80/127 (62%), Gaps = 18/127 (14%)
Query: 1320 GYMEAKKRKLEEQFELEANSDSR-----GGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEE 1374
GYM AKKRKL+EQFE +A++ + IF GVAI+VNG+T+ P A+E
Sbjct: 1 GYMAAKKRKLDEQFETDASNQVQKEGTCSSIFNGVAIYVNGWTE-----------PPADE 49
Query: 1375 LKALMMLHGGIYHHYES-SRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLD 1433
L+ LM +HGG Y Y S S TTH+IASNLP + K K+++P+WI +SI AG LL
Sbjct: 50 LRRLMQVHGGKYDVYPSRSHTTHVIASNLPD-RKIKDIKDKKVVRPQWITESIKAGYLLS 108
Query: 1434 HKKYLLY 1440
H Y+LY
Sbjct: 109 HVPYMLY 115
Score = 63.9 bits (154), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 7/123 (5%)
Query: 1782 TLVRTPSPSPILDMSTSILDTTTS-HI--LSSNVSLQEMRTMLREWM--CESQPEPSDIE 1836
++ P P+P+ + + S DTT H L V L E++ +L+EW C PE D+E
Sbjct: 1071 SVAPVPEPAPV-EAAVSTCDTTAQVHQVNLCGRVELPEVKELLKEWTHTCPV-PEEEDVE 1128
Query: 1837 MFSEYLSNLVEERHLNPIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSES 1896
F +YL L+ +R+L + +L++++RR +++ W A +E+++ +Q M+ S+
Sbjct: 1129 QFVQYLHQLILDRNLETVDLLIKYIRRLCNALDTSTWRSAVEEIINSIQEVMEQLYGSKL 1188
Query: 1897 KIV 1899
K+
Sbjct: 1189 KVT 1191
Score = 43.5 bits (101), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 1180 SAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
S KP SS + +F+ EFY+ SRLHHLST + F+ YVN L
Sbjct: 305 SGKKPMGSS----KDANFVAEFYDNSRLHHLSTWRTDFQAYVNVL 345
>gi|321473409|gb|EFX84376.1| hypothetical protein DAPPUDRAFT_670 [Daphnia pulex]
Length = 667
Score = 249 bits (636), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 119/181 (65%), Positives = 144/181 (79%), Gaps = 4/181 (2%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+ KLEDA+ AGT SIDCTL LTEGDS K++ VSGL +G DK GVFPL KLLNVR AT
Sbjct: 10 ILKLEDAHLAGTSESIDCTLFLTEGDSVKAVVVSGLEKIGYDKNGVFPLGRKLLNVRVAT 69
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
+QI +N E+NNL+KILGL+Y KKY TVED+K+LRYGRL+IMTD D DG+ KGLIINF+
Sbjct: 70 SEQIAKNLEVNNLMKILGLEYGKKYDTVEDLKSLRYGRLVIMTDPDPDGAQFKGLIINFL 129
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKA----REELSFYSLPEFEEWKEETTNWHTYKIKYY 630
H+NWP+LLRLPFL++F+ PI+KATK E L+FYSL EFE+WK +T NW Y IK+Y
Sbjct: 130 HYNWPSLLRLPFLQQFVIPIVKATKGIGELAESLTFYSLDEFEQWKTQTENWRHYHIKHY 189
Query: 631 K 631
K
Sbjct: 190 K 190
Score = 131 bits (330), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE++ PIIPMVLVNGA GIGTG+ TKIP NPREI++N+KRM+ GE P PM PW+K +
Sbjct: 410 IEPEYFAPIIPMVLVNGANGIGTGFKTKIPKQNPREIIENLKRMLNGEKPNPMDPWFKGY 469
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT-LDTLLHGAEK 772
+G ++ FV++GE+A+L +EITEL V T +YK + L+ LL G+E+
Sbjct: 470 RGTVERIDQLNFVISGELAVLSPTTIEITELPVDVPTENYKKSVLEKLLCGSEE 523
>gi|291234827|ref|XP_002737348.1| PREDICTED: REV1-like [Saccoglossus kowalevskii]
Length = 1234
Score = 249 bits (636), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 129/304 (42%), Positives = 184/304 (60%), Gaps = 43/304 (14%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEM+VD S ++ + +TPLQ A+ +RE + +ETGC S G N L AR+AT+
Sbjct: 524 IEAVSCDEMFVDISDIINGIKVTPLQVATAIREELYRETGCNASAGIAPNILLARMATRI 583
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKPNGQF+L ++F+ L LPGVG SL +L ++G TCG+LQ+ L+ LQ E
Sbjct: 584 AKPNGQFYLQADTAAEFIKTQLLKGLPGVGSSLNHRLETMGLTTCGELQDKPLRMLQQEF 643
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
G K G +LY +CRG D++ +T + +RKSVSAE+NYGIRF + E + FL +L+ EV+KRL
Sbjct: 644 GPKTGQSLYNYCRGIDERPITADKERKSVSAEINYGIRFTQDSEAQDFLTELSTEVQKRL 703
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVR 2138
+ +KM+GK ITLKL R + AP E++KF+GHGVCD I KSS+L
Sbjct: 704 KNIKMRGKTITLKLKARKSSAPLESAKFMGHGVCDNIAKSSTL----------------- 746
Query: 2139 SAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQ 2198
P + K ITK E + ++ ++K+ ++RG+GIQ
Sbjct: 747 --MTPTDDVKI--------ITK----------------ECVMLLRQMKIHAADMRGMGIQ 780
Query: 2199 VSKL 2202
++KL
Sbjct: 781 INKL 784
Score = 249 bits (635), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 197/604 (32%), Positives = 282/604 (46%), Gaps = 144/604 (23%)
Query: 1317 KKGGYMEAKKRKLEEQFELEA-----NSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPS 1371
++GGYM AKKRKL+EQF + S IF+GV I+VNGYT VPS
Sbjct: 16 EEGGYMAAKKRKLDEQFGEDVPRQIQRQGSSSKIFEGVTIYVNGYT-----------VPS 64
Query: 1372 AEELKALMMLHGGIY-HHYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGK 1430
++ELK LMMLHGG + +Y + THIIA+ LPH+KI +K K++K +WI+DSI AGK
Sbjct: 65 SDELKRLMMLHGGRHTFYYRKTTVTHIIATTLPHSKILDIK-DKKVMKADWILDSIKAGK 123
Query: 1431 LLDHKKYLL------------YTGTDAKPLTKLLQKSYF-----ENTEAPCCSKSL---- 1469
LL Y+L +T D + + EN + P KS
Sbjct: 124 LLSCPPYMLYTKQSKSQPGIRFTKVDPPSANQATSSASIASEDSENRDDPANQKSEFLQM 183
Query: 1470 -VETSSHTSTVSDS--VDNTEESKSEAVNSEESKSEAAN---------PIESKQTVKTKE 1517
+E+S T+ +S + N E S+ N E S+ N +E VK
Sbjct: 184 EIESSELTTQDPESGKLANHESDSSDLTNQEPESSDFTNMEIENYELRNLEISSPVKVSS 243
Query: 1518 SKLETVNI----------------------------SAPKPQASST--KN--------AS 1539
+ +V + S PQ++ KN A
Sbjct: 244 QSVTSVCVNQDNSVMSFDENEVMTDTNMNDGDCRKKSKESPQSAQLMGKNIDQRLPAKAG 303
Query: 1540 NEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDL 1599
+ +F+ EFY SRLHH++T G+ FK V +L+ + D VF G E ++K S + +D
Sbjct: 304 DPNFVSEFYTNSRLHHIATWGAEFKDLVKKLQTEGDAVFSGREKLKKLYAS---SRSDDK 360
Query: 1600 EETF---SDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKV--R 1654
F SD ++PE VIMHIDMDCFFVSVG+ PEL+ PVAV H KG +++ R
Sbjct: 361 VHDFGFHSDKKGGNKPERVIMHIDMDCFFVSVGLLSRPELKGTPVAVTHSKGKGTQLTNR 420
Query: 1655 EGVDRQAEFDIYRQR-----------TMNRMGLNT--------------------REYGL 1683
G D + E Y R + +++ +NT R+ G+
Sbjct: 421 PGADPEFEKAYYENRHKQKVVKGKSMSGDKIQMNTLDSTKTFTSMAEIASCSYEARKAGI 480
Query: 1684 GNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLN--- 1740
NGMF+G A K CP+L+ +PYDFE YKEVS LY +AS T +IEAVS +E F++
Sbjct: 481 KNGMFMGQAKKLCPDLQAIPYDFEKYKEVSQILYKTVASYTHDIEAVS--CDEMFVDISD 538
Query: 1741 ------ALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPSPSPILD 1794
P + + ++L R+ N + +A +I+ A T + P+ L
Sbjct: 539 IINGIKVTPLQVATAIREELYRETGC-----NASAGIAPNILLARMATRIAKPNGQFYLQ 593
Query: 1795 MSTS 1798
T+
Sbjct: 594 ADTA 597
Score = 60.8 bits (146), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 60/98 (61%), Gaps = 3/98 (3%)
Query: 1808 LSSNVSLQEMRTMLREWMCESQPEPS--DIEMFSEYLSNLVEERHLNPIVILLRFLRRHV 1865
L V L +++T+++EW+ ES P P D+ F +Y+++LV++++L + +LL++L+RHV
Sbjct: 1138 LCGRVDLSDVKTLVKEWI-ESCPAPELEDVGQFVQYINDLVDDKNLETVDLLLKYLKRHV 1196
Query: 1866 GKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVS 1903
K + W + Y ++ Q +K S+ KI S ++
Sbjct: 1197 MKTGRSEWKDGYNLIVIQTQDLIKSIYGSQLKIESDLT 1234
Score = 45.4 bits (106), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 1159 RRKEEESTQTVQVELREGVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFK 1218
R+K +ES Q+ Q+ G NI P A + +F+ EFY SRLHH++T G+ FK
Sbjct: 277 RKKSKESPQSAQLM---GKNIDQRLP-----AKAGDPNFVSEFYTNSRLHHIATWGAEFK 328
Query: 1219 QYVNQL 1224
V +L
Sbjct: 329 DLVKKL 334
>gi|432118516|gb|ELK38104.1| DNA repair protein REV1 [Myotis davidii]
Length = 1282
Score = 249 bits (635), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 192/327 (58%), Gaps = 47/327 (14%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E V M +S + + AVSCDE VD +++L E LTP +FAS +R I
Sbjct: 544 AYKE----VARTMYETLASYTHNIEAVSCDEALVDITEILAETKLTPDEFASAVRMEIKD 599
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVG S+ KL
Sbjct: 600 QTHCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGRSMEAKL 659
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ RLQ E G K G LY+ CRG DD+ + E +RKS+SAE+NYGI
Sbjct: 660 ASLGIKTCGDLQYMTMARLQREFGPKTGQMLYRFCRGLDDRPVRTEKERKSISAEINYGI 719
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR AP E +KF GHG+CD+I
Sbjct: 720 RFTQPKEAEAFLLSLSEEIQRRLEAAGMKGKRLTLKIMVRKPGAPVETAKFGGHGICDHI 779
Query: 2116 TKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL 2175
++ +L D T S+ + I
Sbjct: 780 ARTVTL----------------------------------DQATDSAKV---------IG 796
Query: 2176 KEVLFIVNKLKVDPVELRGIGIQVSKL 2202
K L + + LK++ ++RG+GIQV++L
Sbjct: 797 KATLNMFHTLKLNISDMRGVGIQVNQL 823
Score = 155 bits (392), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 161/301 (53%), Gaps = 48/301 (15%)
Query: 1470 VETSSHTSTVSDSVDNTEESKSEAVNSEES--KSEAANPIESKQTVKTKESKLETVNISA 1527
V+ S ++ +D+V N + S ++ S S K A+ + TK + T++ +A
Sbjct: 276 VQLSQQSTRNTDAVRNPHRTNSFSLTSLHSNTKINGAHYSTLQGPSSTKSTSGPTLSKAA 335
Query: 1528 PKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKW 1587
P S S+ F+ +FY++SRLHH+ST ++VN L+ + +G+F G E ++K
Sbjct: 336 P----SVPSRPSDCSFISDFYSRSRLHHISTWKCELTEFVNTLQRQSNGIFPGREKLKKM 391
Query: 1588 KT---SLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVA 1644
KT +L +T+ ++ S SP + IMH+DMDCFFVSVGIR+ P+L+ +PVAV
Sbjct: 392 KTGRSALVVTDTGNM----SVLSSPRH-QSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVT 446
Query: 1645 HGKGNS-SKVREGVDRQAEFDIYR-------------------QRTMNRMGLNT------ 1678
+G + +R G + Q E+ Y+ Q +++ G+++
Sbjct: 447 SNRGTGRAPLRPGANPQLEWQYYQNKILKGKAADIPDSSLWENQDSVHTNGIDSVLSKAE 506
Query: 1679 --------REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAV 1730
R+ G+ NGMF G+A + CPNL+ VPYDF YKEV+ +Y +AS T NIEAV
Sbjct: 507 IASCSYEARQVGIKNGMFFGYAKQLCPNLQAVPYDFHAYKEVARTMYETLASYTHNIEAV 566
Query: 1731 S 1731
S
Sbjct: 567 S 567
Score = 136 bits (342), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 89/129 (68%), Gaps = 16/129 (12%)
Query: 1317 KKGGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSAE 1373
K GGYM AK +KLEEQF +A G IF GVAI+VNGYT PSAE
Sbjct: 17 KWGGYMAAKVQKLEEQFRSDAEMQKDGTSSTIFSGVAIYVNGYTD-----------PSAE 65
Query: 1374 ELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL 1432
EL+ LMMLHGG YH +Y S+TTHIIA+NLP KIK+LK G+K+I+PEWIV+SI AG+LL
Sbjct: 66 ELRKLMMLHGGQYHVYYSRSKTTHIIATNLPTAKIKELK-GEKVIRPEWIVESIKAGRLL 124
Query: 1433 DHKKYLLYT 1441
+ Y LY+
Sbjct: 125 SYIPYQLYS 133
Score = 48.5 bits (114), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+L+EW+ S P DI +Y ++L+EE+ L + +++++++R
Sbjct: 1190 LAGAVEFSDVKTLLKEWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLTQ 1249
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1250 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1281
>gi|449280794|gb|EMC88020.1| DNA repair protein REV1 [Columba livia]
Length = 1254
Score = 247 bits (631), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 137/334 (41%), Positives = 196/334 (58%), Gaps = 47/334 (14%)
Query: 1875 EAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIA 1934
+AY+E+ V + +S + + AVSCDE VD +++L E LTP + A+ +R I
Sbjct: 554 DAYKEVARTVYEIL----ASYTHNIEAVSCDEALVDITEILTETRLTPDELANAIRTEIK 609
Query: 1935 KETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFK 1994
+T CT S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ ++ LPGVG ++ K
Sbjct: 610 AQTKCTASVGMGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTSLPGVGRTMESK 669
Query: 1995 LNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYG 2054
L SLG +TCGDLQ S+ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYG
Sbjct: 670 LASLGIKTCGDLQCASMSKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYG 729
Query: 2055 IRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDY 2114
IRF +E E FL L+ E+++RLE MKGK +TLK+MVR A AP E +K+ GHG+CD
Sbjct: 730 IRFTQPKEAEAFLLSLSEEIQRRLEAAGMKGKRLTLKIMVRKAGAPVEPAKYGGHGICDN 789
Query: 2115 ITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQI 2174
I ++ +L D+ T S+ + I
Sbjct: 790 IARTVTL----------------------------------DHATDSAKV---------I 806
Query: 2175 LKEVLFIVNKLKVDPVELRGIGIQVSKLEHQSKT 2208
KE L + + +K++ ++RG+GIQV +L S+T
Sbjct: 807 GKETLNMFHTMKLNISDMRGVGIQVQQLVPISRT 840
Score = 155 bits (392), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 134/272 (49%), Gaps = 54/272 (19%)
Query: 1501 SEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMG 1560
S P +K T SK ++ +S P S+ F+ +FY++SRLHH+ST
Sbjct: 320 STVQGPSSTKSTSVPTPSKATSLPVSKP----------SDCSFISDFYSRSRLHHISTWK 369
Query: 1561 SMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHID 1620
++VN L+ K+ GVF G E ++KWK + + + + S ++P+ IMH+D
Sbjct: 370 CELTEFVNSLQRKNSGVFPGREKLKKWKAGRSALKTDTGNVSVA---SSAKPQSCIMHVD 426
Query: 1621 MDCFFVSVGIRHHPELQDEPVAVAHGKG-NSSKVREGVDRQAEFDIYRQRTMN------- 1672
MDCFFVSV IR+ P+L+ +PVAV +G + +R G + Q E Y+ + +N
Sbjct: 427 MDCFFVSVAIRNRPDLKGKPVAVTSNRGAGKAPLRPGANPQLEQQYYQNKLLNGKAESRV 486
Query: 1673 ---------------------------------RMGLNTREYGLGNGMFVGHALKKCPNL 1699
R+ G+ NGMF G A K CPNL
Sbjct: 487 PDKLDSSVWEHPDSTHVNGADFNLTVLSMAEIASCSYEARQVGIKNGMFFGQAKKLCPNL 546
Query: 1700 KIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
+ V YDF+ YKEV+ +Y ++AS T NIEAVS
Sbjct: 547 QAVSYDFDAYKEVARTVYEILASYTHNIEAVS 578
Score = 127 bits (319), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 69/130 (53%), Positives = 89/130 (68%), Gaps = 24/130 (18%)
Query: 1321 YMEAKKRKLEEQF--------ELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
YM AK +KLE+QF + + NS S IF GVAI+VNG+T PSA
Sbjct: 22 YMSAKVKKLEDQFRSDSAIQHQKDGNSSS---IFSGVAIYVNGFTD-----------PSA 67
Query: 1373 EELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKL 1431
+EL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+++PEWI++SI AG+L
Sbjct: 68 DELRRLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVVRPEWIMESIKAGRL 126
Query: 1432 LDHKKYLLYT 1441
L H Y LYT
Sbjct: 127 LSHIPYQLYT 136
Score = 50.4 bits (119), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+L+EW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1162 LAGAVEFNDVKTLLKEWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVVKYMKRLMQ 1221
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKIV 1899
+VW A+ +L VQ ++ S K++
Sbjct: 1222 SSVESVWNMAFDFILDNVQVVLQQTYGSTLKVI 1254
>gi|397644700|gb|EJK76511.1| hypothetical protein THAOC_01724 [Thalassiosira oceanica]
Length = 450
Score = 247 bits (631), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 160/443 (36%), Positives = 239/443 (53%), Gaps = 85/443 (19%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITET-MWLMNRETNH------------M 73
N+ +VE+ Y +K+ LEHILLRP Y+G E + W + +++ M
Sbjct: 59 TNEPTVEETYSRKTPLEHILLRPGMYVGPTERLPPVACWTLQSDSDRQNPIDGSVSRWAM 118
Query: 74 ERREITYVPGLYKIFDEILVNACDNKQRDPK-MNCIKITVNQETNT----ISVWNNGKGI 128
R E+ +P L K+FDEILVNA DN+ R P N I +T+++ + IS+ NNGK I
Sbjct: 119 HREELRSIPALLKVFDEILVNASDNRLRHPSSCNRIDVTIDRGDDKSKPRISICNNGKSI 178
Query: 129 PVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTG 188
PV HK EKM+VP ++FG HLLT SN++D++ ++TG
Sbjct: 179 PVQMHKKEKMYVPELLFG-------------------------HLLTGSNFDDDQRRLTG 213
Query: 189 GRNGYGAKLCNIFSSKFVVE---TSCSEYK-KSFKQVWKDNMSKVTSPEIKSGSKDD--- 241
GR+GYGAKL N+FSS+FVVE T S K K++KQVW DNM + ++ K D
Sbjct: 214 GRHGYGAKLTNVFSSEFVVEIRDTHSSRGKCKTYKQVWIDNMHTCSEAQVDIRLKQDTDL 273
Query: 242 -FTKITFTPDLTKF----KMTSLDKDMVDLITRRAYD-AAASTKDVKVFLNGEKLPVKNF 295
+TKITF PDL + KMT L ++ L+ RR D A S ++V LNGE++ + F
Sbjct: 274 EYTKITFVPDLARLANDAKMTVLPEEEYKLMRRRVVDIAGCSGGKMRVTLNGEEISLPGF 333
Query: 296 QDYVKLY-TDRQDEDGDPV-KIIYENVNPRWEVAIAPSD-RGFQQVSFVNSIATTKGGRH 352
+DYV L + +D++G PV ++Y +N R+EV++ SD + +SFVN + T++GG H
Sbjct: 334 EDYVDLCRSSFEDDNGLPVPPMVYHRLNSRYEVSVGLSDSKSLDSISFVNGMNTSRGGTH 393
Query: 353 VDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMA 412
+DA+ + I I + V K MA+ L + ++ ++
Sbjct: 394 IDALANQISHFIADHVNTK-------------------------MARQLDPLELK-SPIS 427
Query: 413 LKPFQVKNHIWIFINCLIVNPTF 435
+ P VK ++ + +NCLI NP F
Sbjct: 428 VTPRMVKRNLMLCVNCLIENPHF 450
>gi|7500285|pir||T21619 hypothetical protein F32A11.5 - Caenorhabditis elegans
Length = 263
Score = 246 bits (629), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 130/263 (49%), Positives = 162/263 (61%), Gaps = 51/263 (19%)
Query: 32 VEKIYQKKSQLEHILLRPDTYIGSVEPITET-MWLMNRETNHMERREITYVPGLYKIFDE 90
VE YQKKS LEHILLRPD+YIGS+E + MW+ N + + +E
Sbjct: 51 VEDAYQKKSHLEHILLRPDSYIGSIEHNEKKPMWVYNMKDSKLE---------------- 94
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
QRDPKMN IKIT+N E N ISV+NNGKGIPV +HK EK++VP +IF
Sbjct: 95 ---------QRDPKMNTIKITINTEKNEISVYNNGKGIPVTQHKVEKVYVPELIF----- 140
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
G LLTS NYND+E K+TGGRNGYGAKLCN+FS+K +ETS
Sbjct: 141 --------------------GALLTSYNYNDDEKKLTGGRNGYGAKLCNLFSTKVTLETS 180
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
+YK +FKQ W +NM++ P I + +DFTKITF+PDL KFK LD D+ L+ RR
Sbjct: 181 SVDYKSAFKQTWINNMTRDEEPTIVPSTDEDFTKITFSPDLAKFKTKELDDDICHLMARR 240
Query: 271 AYDAAASTKDVKVFLNGEKLPVK 293
AYD A S K V V LNG+++P+K
Sbjct: 241 AYDVAGSCKGVAVSLNGKRIPIK 263
>gi|345777226|ref|XP_538458.3| PREDICTED: DNA repair protein REV1 [Canis lupus familiaris]
Length = 1253
Score = 246 bits (629), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 135/327 (41%), Positives = 193/327 (59%), Gaps = 47/327 (14%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E V M +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 545 AYKE----VARTMYETLASYTHNIEAVSCDEALVDITEILAETRLTPDEFANAVRTEIKD 600
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +S+LPGVG S+ KL
Sbjct: 601 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVSNLPGVGRSMESKL 660
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
NSLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKS+SAE+NYGI
Sbjct: 661 NSLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSISAEINYGI 720
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE +KGK +TLK+MVR + AP E +KF GHG+CD I
Sbjct: 721 RFTQPKEAEAFLLNLSEEIQRRLEAAHVKGKRLTLKVMVRKSGAPVETAKFGGHGICDNI 780
Query: 2116 TKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL 2175
T++ +L D T S+ + I
Sbjct: 781 TRTVTL----------------------------------DQATDSAKI---------IG 797
Query: 2176 KEVLFIVNKLKVDPVELRGIGIQVSKL 2202
K L + + +K++ ++RG+GI V++L
Sbjct: 798 KATLNMFHTMKLNISDMRGVGIHVNQL 824
Score = 149 bits (375), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 155/301 (51%), Gaps = 45/301 (14%)
Query: 1469 LVETSSHTSTVSDSVDNTEESKSEAVNSEESKSEAANPIESK-QTVKTKESKLETVNISA 1527
+V+ ++ +D+V N + S +++S S ++ S Q + +S +S
Sbjct: 275 IVQQFQQSTRNTDTVRNPHRTNSFSLSSLHSNTKINGAHHSAVQGPSSTKSTSSVPTLSK 334
Query: 1528 PKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKW 1587
P S S+ +F+ +FY++SRLHH+S ++VN L+ + GVF G E ++K
Sbjct: 335 AAPLVPS--KPSDCNFISDFYSRSRLHHISMWKCELTEFVNTLQRQSSGVFPGREKLKKM 392
Query: 1588 KT---SLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVA 1644
KT +L +T+ ++ S SP + IMH+DMDCFFVSVGIR+ P+L+ +PVAV
Sbjct: 393 KTGRSTLVVTDTGNM----SVLSSPRH-QSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVT 447
Query: 1645 HGKGNS-SKVREGVDRQAEFDIYR-------------------QRTMNRMGLNT------ 1678
+G + +R G + Q E+ Y+ Q + G+++
Sbjct: 448 SNRGTGRAPLRPGANPQLEWQYYQNKILKGKAAEIPDSSMWENQDSAQANGIDSVLSKAE 507
Query: 1679 --------REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAV 1730
R+ G+ NGMF G A + CPNL+ VPYDF YKEV+ +Y +AS T NIEAV
Sbjct: 508 IASCSYEARQVGIKNGMFFGQAKQLCPNLQAVPYDFHAYKEVARTMYETLASYTHNIEAV 567
Query: 1731 S 1731
S
Sbjct: 568 S 568
Score = 135 bits (341), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 90/130 (69%), Gaps = 16/130 (12%)
Query: 1316 KKKGGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
+K GGYM AK +KLEEQF +A G IF GVAI+VNGYT PSA
Sbjct: 16 EKWGGYMAAKVQKLEEQFRSDATIQKDGTSSTIFSGVAIYVNGYTD-----------PSA 64
Query: 1373 EELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKL 1431
EEL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+L
Sbjct: 65 EELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRL 123
Query: 1432 LDHKKYLLYT 1441
L Y LY+
Sbjct: 124 LSCIPYQLYS 133
Score = 49.3 bits (116), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+L+EW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1161 LAGAVEFSDVKTLLKEWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1220
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1221 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1252
>gi|426336583|ref|XP_004031548.1| PREDICTED: DNA repair protein REV1 [Gorilla gorilla gorilla]
Length = 1251
Score = 246 bits (628), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 121/246 (49%), Positives = 168/246 (68%), Gaps = 4/246 (1%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E+ + + +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 545 AYKEVAQTLYETL----ASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEIKD 600
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVGHS+ KL
Sbjct: 601 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGHSMESKL 660
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 661 ASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 720
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR AP E +KF GHG+CD I
Sbjct: 721 RFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKPGAPVETAKFGGHGICDNI 780
Query: 2116 TKSSSL 2121
T++ +L
Sbjct: 781 TRTVTL 786
Score = 152 bits (383), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 125/230 (54%), Gaps = 42/230 (18%)
Query: 1539 SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT---SLGITE 1595
S+ +F+ FY+ SRLHH+S ++VN L+ + +G+F G E ++K KT +L +T+
Sbjct: 344 SDCNFISNFYSHSRLHHISMWKCELTEFVNTLQRQSNGIFPGREKLKKMKTGRSALVVTD 403
Query: 1596 DEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS-SKVR 1654
D+ + ++P + IMH+DMDCFFVSVGIR+ P+L+ +PVAV +G + +R
Sbjct: 404 TGDM--SVLNSP---RHQSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLR 458
Query: 1655 EGVDRQAEFDIYRQRTMNRMGLN---------------------------------TREY 1681
G + Q E+ Y+ + + + R+
Sbjct: 459 PGANPQLEWQYYQNKILKGKAADIPDSSLWENPDSAQANGIDSVLSRAEIASCSYEARQL 518
Query: 1682 GLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
G+ NGMF GHA + CPNL+ VPYDF YKEV+ LY +AS T NIEAVS
Sbjct: 519 GIKNGMFFGHAKQLCPNLQAVPYDFHAYKEVAQTLYETLASYTHNIEAVS 568
Score = 137 bits (346), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/127 (58%), Positives = 89/127 (70%), Gaps = 16/127 (12%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSAEEL 1375
GGYM AK +KLEEQF +A G IF GVAI+VNGYT PSAEEL
Sbjct: 19 GGYMAAKVQKLEEQFRSDAAMQKDGTSSTIFSGVAIYVNGYTD-----------PSAEEL 67
Query: 1376 KALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDH 1434
+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+LL +
Sbjct: 68 RKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRLLSY 126
Query: 1435 KKYLLYT 1441
Y LYT
Sbjct: 127 IPYQLYT 133
Score = 50.8 bits (120), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+LREW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1159 LAGAVEFDDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1218
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1219 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1250
>gi|431902461|gb|ELK08960.1| DNA repair protein REV1 [Pteropus alecto]
Length = 1451
Score = 246 bits (628), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 135/327 (41%), Positives = 194/327 (59%), Gaps = 47/327 (14%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E V M +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 743 AYKE----VARTMYETLASYTHNIEAVSCDEALVDITEILAETRLTPDEFANAVRMEIKD 798
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVGHS+ KL
Sbjct: 799 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGHSMESKL 858
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 859 ASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 918
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E+FL L+ E+++RLE +KGK +TLK+MVR AP E +KF GHG+CD+I
Sbjct: 919 RFTQPKEAESFLLSLSEEIQRRLEAAGVKGKRLTLKVMVRKPGAPVETAKFGGHGICDHI 978
Query: 2116 TKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL 2175
++ +L D T S+ + I
Sbjct: 979 ARTVTL----------------------------------DQATDSAKI---------IG 995
Query: 2176 KEVLFIVNKLKVDPVELRGIGIQVSKL 2202
K L + + +K++ ++RG+GIQV++L
Sbjct: 996 KATLNMFHTMKLNISDMRGVGIQVNQL 1022
Score = 103 bits (256), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/94 (56%), Positives = 65/94 (69%), Gaps = 5/94 (5%)
Query: 1349 VAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKI 1407
V N C D Y PSAEEL+ LMMLHGG YH +Y S+TTHIIA+NLP KI
Sbjct: 134 VTYLANLTVTDCPQRDTY---PSAEELRQLMMLHGGQYHVYYSRSKTTHIIATNLPTAKI 190
Query: 1408 KKLKPGDKIIKPEWIVDSISAGKLLDHKKYLLYT 1441
K+LK G+K+I+PEWIV+SI AG+LL + Y LY+
Sbjct: 191 KELK-GEKVIRPEWIVESIKAGRLLSYIPYQLYS 223
Score = 99.8 bits (247), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 95/167 (56%), Gaps = 10/167 (5%)
Query: 1510 KQTVKTKESKLETVNISA-PKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVN 1568
+ TV+ S T ++ A K S+ S+ F+ +FY++SRLHH+S ++V+
Sbjct: 412 RSTVQGPSSTNSTSSVPALSKATPSAPSKPSSCSFISDFYSRSRLHHISMWKCELTEFVS 471
Query: 1569 ELREKHDGVFRGIEAIRKWKT---SLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFF 1625
L+++ G+F G E ++K KT +L +T+ ++ S + + IMH+DMDCFF
Sbjct: 472 TLQKQSGGIFPGREKLKKMKTGRSALVVTDTGNMSVLNS-----ARHQSCIMHVDMDCFF 526
Query: 1626 VSVGIRHHPELQDEPVAVAHGKGNS-SKVREGVDRQAEFDIYRQRTM 1671
VSVGIR+ P+L+ +PVAV +G + +R G D E+ Y+ R +
Sbjct: 527 VSVGIRNRPDLKGKPVAVTSNRGTGRAPLRPGADPLLEWRYYQNRVL 573
Score = 72.0 bits (175), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 39/54 (72%)
Query: 1678 TREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
R+ G+ NGMF G+A + CPNL+ VPYDF YKEV+ +Y +AS T NIEAVS
Sbjct: 713 ARQVGIKNGMFFGYAKQLCPNLQAVPYDFHAYKEVARTMYETLASYTHNIEAVS 766
Score = 48.9 bits (115), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++ +LREW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1359 LAGAVEFSDVKALLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1418
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1419 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1450
>gi|355716153|gb|AES05519.1| REV1-like protein [Mustela putorius furo]
Length = 1247
Score = 246 bits (628), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 136/327 (41%), Positives = 192/327 (58%), Gaps = 47/327 (14%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E V M +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 538 AYKE----VARTMYETLASYTHNIEAVSCDEALVDITEILAETRLTPDEFANAVRMEIKD 593
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +S+LPGVG S+ KL
Sbjct: 594 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVSNLPGVGRSMESKL 653
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKS+SAE+NYGI
Sbjct: 654 TSLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSISAEINYGI 713
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR AP E +KF GHG+CD I
Sbjct: 714 RFTQPKEAEAFLLNLSEEIQRRLEAAGMKGKRLTLKVMVRKPGAPVETAKFGGHGICDNI 773
Query: 2116 TKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL 2175
T++ +L D T S+ + I
Sbjct: 774 TRTVTL----------------------------------DQATDSAKI---------IG 790
Query: 2176 KEVLFIVNKLKVDPVELRGIGIQVSKL 2202
K L + + +K++ ++RG+GIQV++L
Sbjct: 791 KATLNMFHTMKLNISDMRGVGIQVNQL 817
Score = 147 bits (372), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 157/307 (51%), Gaps = 58/307 (18%)
Query: 1469 LVETSSHTSTVSDSVDNTEESKSEAVNSEESK--------SEAANPIESKQTVKTKESKL 1520
+V S ++ +D+V N + S +++S S S P +K T S +
Sbjct: 269 VVHLSQQSTRNTDAVRNPHRTNSFSLSSLHSNTKVNGAHHSAVQGPSSTKST-----SSI 323
Query: 1521 ETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRG 1580
T++ +AP S S+ F+ +FY++SRLHH+S ++V+ L+ + GVF G
Sbjct: 324 PTLSKAAP----SVPSKPSDCGFISDFYSRSRLHHISMWKCELTEFVSALQRQSSGVFPG 379
Query: 1581 IEAIRKWKT---SLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQ 1637
E ++K KT +L +T+ ++ S SP + IMH+DMDCFFVSVGIR+ P+L+
Sbjct: 380 REKLKKMKTGRSALVVTDTGNM----SVLSSPRH-QSCIMHVDMDCFFVSVGIRNRPDLK 434
Query: 1638 DEPVAVAHGKGNS-SKVREGVDRQAEFDIYR------------------QRTMNRMGLNT 1678
+PVAV +G + +R G + Q E+ Y+ Q + G+++
Sbjct: 435 GKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKILKGKAEIPDSSLWENQDSAQANGIDS 494
Query: 1679 --------------REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLT 1724
R+ G+ NGMF G A + CP+L+ VPYDF YKEV+ +Y +AS T
Sbjct: 495 VLSKAEIASCSYEARQVGIRNGMFFGQAKQLCPSLQAVPYDFHAYKEVARTMYETLASYT 554
Query: 1725 LNIEAVS 1731
NIEAVS
Sbjct: 555 HNIEAVS 561
Score = 135 bits (340), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 90/130 (69%), Gaps = 16/130 (12%)
Query: 1316 KKKGGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
+K GGYM AK +KLEEQF +A G IF GVAI+VNGYT PSA
Sbjct: 10 EKWGGYMAAKVQKLEEQFRSDATLQKDGTSSTIFSGVAIYVNGYTD-----------PSA 58
Query: 1373 EELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKL 1431
EEL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+L
Sbjct: 59 EELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRL 117
Query: 1432 LDHKKYLLYT 1441
L Y LY+
Sbjct: 118 LSCIPYQLYS 127
Score = 49.3 bits (116), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+L+EW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1155 LAGAVEFSDVKTLLKEWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1214
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1215 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1246
>gi|209180465|ref|NP_001126930.1| DNA repair protein REV1 [Pongo abelii]
gi|75040987|sp|Q5R4N7.1|REV1_PONAB RecName: Full=DNA repair protein REV1; AltName: Full=Rev1-like
terminal deoxycytidyl transferase
gi|55733191|emb|CAH93279.1| hypothetical protein [Pongo abelii]
Length = 1250
Score = 246 bits (627), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 121/246 (49%), Positives = 168/246 (68%), Gaps = 4/246 (1%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E+ + + +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 544 AYKEVARTLYETL----ASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEIKD 599
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T CT S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVGHS+ KL
Sbjct: 600 QTKCTASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGHSMESKL 659
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 660 ASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 719
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR AP E +KF GHG+CD I
Sbjct: 720 RFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKPGAPVETAKFGGHGICDNI 779
Query: 2116 TKSSSL 2121
++ +L
Sbjct: 780 ARTVTL 785
Score = 152 bits (385), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 124/229 (54%), Gaps = 41/229 (17%)
Query: 1539 SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT---SLGITE 1595
S+ +F+ FY+ SRLHH+S ++VN L+ + +G+F G E ++K KT +L +T+
Sbjct: 344 SDCNFISNFYSHSRLHHISMWKCELTEFVNTLQRQSNGIFPGREKLKKMKTGRSALVVTD 403
Query: 1596 DEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS-SKVR 1654
D+ + ++P + IMH+DMDCFFVSVGIR+ P+L+ +PVAV +G + +R
Sbjct: 404 TGDM--SLLNSP---RHQSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLR 458
Query: 1655 EGVDRQAEFDIYRQRTMN--------------------------------RMGLNTREYG 1682
G + Q E+ Y+ + + R+ G
Sbjct: 459 PGANPQLEWQYYQNKILKGKADIPDSSLWENPDSAQADGSDSVLSRAEIASCSYEARQLG 518
Query: 1683 LGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
+ NGMF GHA + CPNL+ VPYDF YKEV+ LY +AS T NIEAVS
Sbjct: 519 IKNGMFFGHAKQLCPNLQAVPYDFHAYKEVARTLYETLASYTHNIEAVS 567
Score = 137 bits (346), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/127 (58%), Positives = 89/127 (70%), Gaps = 16/127 (12%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSAEEL 1375
GGYM AK +KLEEQF +A G IF GVAI+VNGYT PSAEEL
Sbjct: 19 GGYMAAKVQKLEEQFRSDAAMQKDGTSSTIFSGVAIYVNGYTD-----------PSAEEL 67
Query: 1376 KALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDH 1434
+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+LL +
Sbjct: 68 RKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRLLSY 126
Query: 1435 KKYLLYT 1441
Y LYT
Sbjct: 127 IPYQLYT 133
Score = 50.8 bits (120), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+LREW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1158 LAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1217
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1218 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1249
>gi|157817328|ref|NP_001101683.1| DNA repair protein REV1 [Rattus norvegicus]
gi|149046321|gb|EDL99214.1| REV1-like (S. cerevisiae) (predicted), isoform CRA_a [Rattus
norvegicus]
Length = 1119
Score = 246 bits (627), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 140/352 (39%), Positives = 194/352 (55%), Gaps = 55/352 (15%)
Query: 1863 RHVGKKESTVWAEAYQ----------EMLSC--VQSAMKHKPSSESKIVSAVSCDEMYVD 1910
R VG K + A Q + +C V A+ +S + + AVSCDE +D
Sbjct: 514 RQVGIKNGMFFGHAKQLCPNLQAVPYDFHACREVAQALYETLASYTHSIEAVSCDEALID 573
Query: 1911 CSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQ 1970
+ +L E L+P +FA+ LR I +T C S G GSN L AR+ATKKAKP+GQ+HL P
Sbjct: 574 VTDILAETKLSPEEFAAALRMEIKNKTQCAASVGIGSNILLARMATKKAKPDGQYHLQPD 633
Query: 1971 IISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHC 2030
+ DF+ ++ LPGVG S+ KL SLG +TCGDLQ +++ +LQ E G K G LY+ C
Sbjct: 634 EVDDFIRGQLVTSLPGVGRSMESKLASLGIKTCGDLQCLTMAKLQKEFGPKTGQMLYRFC 693
Query: 2031 RGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITL 2090
RG DD+ + E +RKSVSAE+NYGIRF +E E FL L+GE++ RLE MKGK +TL
Sbjct: 694 RGLDDRPVRTEKERKSVSAEINYGIRFTQPREAEAFLLSLSGEIQSRLEAAGMKGKRLTL 753
Query: 2091 KLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFL 2150
K+MVR AP E +KF GHG+CD I ++ +L
Sbjct: 754 KIMVRKPGAPIETAKFGGHGICDNIARTVTL----------------------------- 784
Query: 2151 GHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSKL 2202
D T S+ + I K L + + +K++ ++RG+GIQV +L
Sbjct: 785 -----DQATDSAKI---------IGKATLNMFHTMKLNISDMRGVGIQVHQL 822
Score = 154 bits (388), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 135/257 (52%), Gaps = 42/257 (16%)
Query: 1512 TVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELR 1571
TV+ S T ++ K S S+ F+ +FY++SRLHH+ST ++V+ L+
Sbjct: 315 TVQGPSSTKSTSALTLSKVAPSVPSKPSDCSFISDFYSRSRLHHISTWKCELTEFVSALQ 374
Query: 1572 EKHDGVFRGIEAIRKWKT---SLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSV 1628
+ GVF G E ++K KT SL +T+ D+ S P+ +MH+DMDCFFVSV
Sbjct: 375 RQRSGVFPGREKLKKVKTGRSSLVVTDTGDMSVL-----SSPRPQSCVMHVDMDCFFVSV 429
Query: 1629 GIRHHPELQDEPVAVAHGKGNS-SKVREGVDRQAEFDIYR-------------------Q 1668
GIR+ P+L+ +PVAV +G + +R G + Q E+ Y+ Q
Sbjct: 430 GIRNRPDLKGKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKLLKGKAADIPDSSVWENQ 489
Query: 1669 RTMNRMGLNT--------------REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSY 1714
+ G+++ R+ G+ NGMF GHA + CPNL+ VPYDF +EV+
Sbjct: 490 DSAQTNGIDSVLSKAEIASCSYEARQVGIKNGMFFGHAKQLCPNLQAVPYDFHACREVAQ 549
Query: 1715 CLYNLIASLTLNIEAVS 1731
LY +AS T +IEAVS
Sbjct: 550 ALYETLASYTHSIEAVS 566
Score = 138 bits (348), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/130 (57%), Positives = 90/130 (69%), Gaps = 16/130 (12%)
Query: 1316 KKKGGYMEAKKRKLEEQFELEANSDSRG---GIFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
+K GGYM AK +KLEEQF +A G IF GVAI+VNGYT PSA
Sbjct: 16 EKWGGYMAAKVQKLEEQFRSDAAKQKDGTASAIFSGVAIYVNGYTD-----------PSA 64
Query: 1373 EELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKL 1431
EEL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+L
Sbjct: 65 EELRNLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRL 123
Query: 1432 LDHKKYLLYT 1441
L Y LYT
Sbjct: 124 LSSVPYQLYT 133
>gi|149046322|gb|EDL99215.1| REV1-like (S. cerevisiae) (predicted), isoform CRA_b [Rattus
norvegicus]
Length = 1068
Score = 246 bits (627), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 140/352 (39%), Positives = 194/352 (55%), Gaps = 55/352 (15%)
Query: 1863 RHVGKKESTVWAEAYQ----------EMLSC--VQSAMKHKPSSESKIVSAVSCDEMYVD 1910
R VG K + A Q + +C V A+ +S + + AVSCDE +D
Sbjct: 463 RQVGIKNGMFFGHAKQLCPNLQAVPYDFHACREVAQALYETLASYTHSIEAVSCDEALID 522
Query: 1911 CSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQ 1970
+ +L E L+P +FA+ LR I +T C S G GSN L AR+ATKKAKP+GQ+HL P
Sbjct: 523 VTDILAETKLSPEEFAAALRMEIKNKTQCAASVGIGSNILLARMATKKAKPDGQYHLQPD 582
Query: 1971 IISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHC 2030
+ DF+ ++ LPGVG S+ KL SLG +TCGDLQ +++ +LQ E G K G LY+ C
Sbjct: 583 EVDDFIRGQLVTSLPGVGRSMESKLASLGIKTCGDLQCLTMAKLQKEFGPKTGQMLYRFC 642
Query: 2031 RGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITL 2090
RG DD+ + E +RKSVSAE+NYGIRF +E E FL L+GE++ RLE MKGK +TL
Sbjct: 643 RGLDDRPVRTEKERKSVSAEINYGIRFTQPREAEAFLLSLSGEIQSRLEAAGMKGKRLTL 702
Query: 2091 KLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFL 2150
K+MVR AP E +KF GHG+CD I ++ +L
Sbjct: 703 KIMVRKPGAPIETAKFGGHGICDNIARTVTL----------------------------- 733
Query: 2151 GHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSKL 2202
D T S+ + I K L + + +K++ ++RG+GIQV +L
Sbjct: 734 -----DQATDSAKI---------IGKATLNMFHTMKLNISDMRGVGIQVHQL 771
Score = 153 bits (387), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 135/257 (52%), Gaps = 42/257 (16%)
Query: 1512 TVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELR 1571
TV+ S T ++ K S S+ F+ +FY++SRLHH+ST ++V+ L+
Sbjct: 264 TVQGPSSTKSTSALTLSKVAPSVPSKPSDCSFISDFYSRSRLHHISTWKCELTEFVSALQ 323
Query: 1572 EKHDGVFRGIEAIRKWKT---SLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSV 1628
+ GVF G E ++K KT SL +T+ D+ S P+ +MH+DMDCFFVSV
Sbjct: 324 RQRSGVFPGREKLKKVKTGRSSLVVTDTGDMSVL-----SSPRPQSCVMHVDMDCFFVSV 378
Query: 1629 GIRHHPELQDEPVAVAHGKGNS-SKVREGVDRQAEFDIYR-------------------Q 1668
GIR+ P+L+ +PVAV +G + +R G + Q E+ Y+ Q
Sbjct: 379 GIRNRPDLKGKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKLLKGKAADIPDSSVWENQ 438
Query: 1669 RTMNRMGLNT--------------REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSY 1714
+ G+++ R+ G+ NGMF GHA + CPNL+ VPYDF +EV+
Sbjct: 439 DSAQTNGIDSVLSKAEIASCSYEARQVGIKNGMFFGHAKQLCPNLQAVPYDFHACREVAQ 498
Query: 1715 CLYNLIASLTLNIEAVS 1731
LY +AS T +IEAVS
Sbjct: 499 ALYETLASYTHSIEAVS 515
Score = 120 bits (301), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 79/113 (69%), Gaps = 16/113 (14%)
Query: 1316 KKKGGYMEAKKRKLEEQFELEANSDSRG---GIFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
+K GGYM AK +KLEEQF +A G IF GVAI+VNGYT PSA
Sbjct: 16 EKWGGYMAAKVQKLEEQFRSDAAKQKDGTASAIFSGVAIYVNGYTD-----------PSA 64
Query: 1373 EELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVD 1424
EEL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+
Sbjct: 65 EELRNLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVE 116
>gi|40254551|ref|NP_062516.2| DNA repair protein REV1 [Mus musculus]
gi|59798425|sp|Q920Q2.1|REV1_MOUSE RecName: Full=DNA repair protein REV1; AltName: Full=Rev1-like
terminal deoxycytidyl transferase
gi|15617418|dbj|BAB64933.1| deoxycytidyl transferase [Mus musculus]
gi|34784547|gb|AAH58093.1| REV1 homolog (S. cerevisiae) [Mus musculus]
gi|148682594|gb|EDL14541.1| REV1-like (S. cerevisiae) [Mus musculus]
Length = 1249
Score = 245 bits (626), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 142/364 (39%), Positives = 201/364 (55%), Gaps = 55/364 (15%)
Query: 1863 RHVGKKESTVWAEAYQ----------EMLSC--VQSAMKHKPSSESKIVSAVSCDEMYVD 1910
R VG K + A Q + +C V AM +S + + AVSCDE +D
Sbjct: 514 RQVGIKNGMFFGYAKQLCPNLQAVPYDFHACREVAQAMYETLASYTHSIEAVSCDEALID 573
Query: 1911 CSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQ 1970
+ +L E L+P +FA+ LR I +T C S G GSN L AR+ATKKAKP+GQ+HL P
Sbjct: 574 VTDILAETKLSPEEFAAALRIEIKDKTKCAASVGIGSNILLARMATKKAKPDGQYHLQPD 633
Query: 1971 IISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHC 2030
+ DF+ +++LPGVG S+ KL SLG +TCGDLQ +++ +LQ E G K G LY+ C
Sbjct: 634 EVDDFIRGQLVTNLPGVGRSMESKLASLGIKTCGDLQCLTMAKLQKEFGPKTGQMLYRFC 693
Query: 2031 RGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITL 2090
RG DD+ + E +RKSVSAE+NYGIRF +E E FL L+ E+++RLE MKGK +TL
Sbjct: 694 RGLDDRPVRTEKERKSVSAEINYGIRFTQPKEAEAFLLSLSEEIQRRLEAAGMKGKRLTL 753
Query: 2091 KLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFL 2150
K+MVR AP E +KF GHG+CD I ++ +L
Sbjct: 754 KIMVRKPGAPIETAKFGGHGICDNIARTVTL----------------------------- 784
Query: 2151 GHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSKLEHQSKTLA 2210
D T S+ + I K L + + +K++ ++RG+GIQV++L + L+
Sbjct: 785 -----DQATDSAKI---------IGKATLNMFHTMKLNISDMRGVGIQVNQLVPANSNLS 830
Query: 2211 TIDT 2214
T +
Sbjct: 831 TCSS 834
Score = 149 bits (375), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 134/257 (52%), Gaps = 42/257 (16%)
Query: 1512 TVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELR 1571
TV+ S T ++ K S S+ +F+ +FY++SRLHH+ST ++VN L+
Sbjct: 315 TVQGPSSTKSTSVLTLSKVAPSVPSKPSDCNFISDFYSRSRLHHISTWKCELTEFVNTLQ 374
Query: 1572 EKHDGVFRGIEAIRKWKT---SLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSV 1628
+ G+F G E ++K KT SL +T+ T S SP + +MH+DMDCFFVSV
Sbjct: 375 RQSSGIFPGREKLKKVKTGRSSLVVTD----TGTMSVLSSPRH-QSCVMHVDMDCFFVSV 429
Query: 1629 GIRHHPELQDEPVAVAHGKG-NSSKVREGVDRQAEFDIYRQRTMNRMGLN---------- 1677
GIR+ P+L+ +PVAV +G ++ +R G + Q E+ Y+ R + +
Sbjct: 430 GIRNRPDLKGKPVAVTSNRGTGTAPLRPGANPQLEWQYYQNRALRGKAADIPDSSVWENQ 489
Query: 1678 -----------------------TREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSY 1714
R+ G+ NGMF G+A + CPNL+ VPYDF +EV+
Sbjct: 490 DSTQTNGIDSVLSKAEIASCSYEARQVGIKNGMFFGYAKQLCPNLQAVPYDFHACREVAQ 549
Query: 1715 CLYNLIASLTLNIEAVS 1731
+Y +AS T +IEAVS
Sbjct: 550 AMYETLASYTHSIEAVS 566
Score = 140 bits (353), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 76/134 (56%), Positives = 92/134 (68%), Gaps = 16/134 (11%)
Query: 1316 KKKGGYMEAKKRKLEEQFELEANSDSRG---GIFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
+K GGYM AK +KLEEQF +A + G IF GVAI+VNGYT PSA
Sbjct: 16 EKWGGYMAAKVQKLEEQFRTDAANQKDGTASAIFSGVAIYVNGYTD-----------PSA 64
Query: 1373 EELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKL 1431
EEL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+L
Sbjct: 65 EELRNLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRL 123
Query: 1432 LDHKKYLLYTGTDA 1445
L Y LYT A
Sbjct: 124 LSSAPYQLYTKPSA 137
Score = 48.9 bits (115), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+L+EW+ S P DI Y ++L+EE+ L + +++++++R +
Sbjct: 1157 LAGAVEFSDVKTLLKEWITTISDPMEEDILQVVRYCTDLIEEKDLEKLDLVIKYMKRLMQ 1216
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1217 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1248
>gi|114579132|ref|XP_001160264.1| PREDICTED: DNA repair protein REV1 isoform 3 [Pan troglodytes]
gi|410221750|gb|JAA08094.1| REV1 homolog [Pan troglodytes]
gi|410266182|gb|JAA21057.1| REV1 homolog [Pan troglodytes]
gi|410291850|gb|JAA24525.1| REV1 homolog [Pan troglodytes]
gi|410332811|gb|JAA35352.1| REV1 homolog [Pan troglodytes]
Length = 1251
Score = 244 bits (624), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 120/246 (48%), Positives = 167/246 (67%), Gaps = 4/246 (1%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E+ + + +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 545 AYKEVAQTLYETL----ASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEIKD 600
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVGHS+ KL
Sbjct: 601 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGHSMESKL 660
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 661 ASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 720
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR AP E +KF GHG+CD I
Sbjct: 721 RFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKPGAPVETAKFGGHGICDNI 780
Query: 2116 TKSSSL 2121
++ +L
Sbjct: 781 ARTVTL 786
Score = 152 bits (384), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 125/230 (54%), Gaps = 42/230 (18%)
Query: 1539 SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT---SLGITE 1595
S+ +F+ FY+ SRLHH+S ++VN L+ + +G+F G E ++K KT +L +T+
Sbjct: 344 SDCNFISNFYSHSRLHHISMWKCELTEFVNTLQRQSNGIFPGREKLKKMKTGRSALVVTD 403
Query: 1596 DEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS-SKVR 1654
D+ + ++P + IMH+DMDCFFVSVGIR+ P+L+ +PVAV +G + +R
Sbjct: 404 TGDM--SVLNSP---RHQSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLR 458
Query: 1655 EGVDRQAEFDIYRQRTMNRMGLN---------------------------------TREY 1681
G + Q E+ Y+ + + + R+
Sbjct: 459 PGANPQLEWQYYQNKILKGKAADIPDSSLWENPDSAQANGIDSVLSRAEIASCSYEARQL 518
Query: 1682 GLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
G+ NGMF GHA + CPNL+ VPYDF YKEV+ LY +AS T NIEAVS
Sbjct: 519 GIKNGMFFGHAKQLCPNLQAVPYDFHAYKEVAQTLYETLASYTHNIEAVS 568
Score = 138 bits (347), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/127 (58%), Positives = 89/127 (70%), Gaps = 16/127 (12%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSAEEL 1375
GGYM AK +KLEEQF +A G IF GVAI+VNGYT PSAEEL
Sbjct: 19 GGYMAAKVQKLEEQFRSDAAMQKDGTSSTIFSGVAIYVNGYTD-----------PSAEEL 67
Query: 1376 KALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDH 1434
+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+LL +
Sbjct: 68 RKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRLLSY 126
Query: 1435 KKYLLYT 1441
Y LYT
Sbjct: 127 IPYQLYT 133
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V L +++T+LREW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1159 LAGAVELNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1218
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1219 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1250
>gi|348571697|ref|XP_003471632.1| PREDICTED: DNA repair protein REV1-like [Cavia porcellus]
Length = 1251
Score = 244 bits (624), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 133/327 (40%), Positives = 192/327 (58%), Gaps = 47/327 (14%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E V M +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 543 AYKE----VARTMYETLASYTHSIEAVSCDEALVDITEILAETKLTPDEFANAVRMEIKD 598
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
T C S G GSN L A++ATKKAKP+GQ+HL P+ + DF+ +++LPGVG S+ +KL
Sbjct: 599 RTKCAASVGIGSNILLAKMATKKAKPDGQYHLKPEEVDDFIRGQLVANLPGVGRSMEYKL 658
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ++++ +LQ E G K G TLY+ CRG DD+ + E +RKS+SAE+NYGI
Sbjct: 659 TSLGIKTCGDLQHMTMAKLQKEFGPKIGQTLYRFCRGLDDRPVRTEKERKSISAEINYGI 718
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL + E+++RLE MKGK +TLK+MVR AP E +KF GHG+CD I
Sbjct: 719 RFTQPKEAEAFLLNFSEEIQRRLEAAGMKGKRLTLKIMVRKPGAPIETAKFGGHGICDNI 778
Query: 2116 TKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL 2175
++ +L D T S+ + I
Sbjct: 779 ARTVTL----------------------------------DQATDSAKI---------IG 795
Query: 2176 KEVLFIVNKLKVDPVELRGIGIQVSKL 2202
K +L + + +K++ ++RG+GI V++L
Sbjct: 796 KAILNMFHTMKLNISDMRGVGIHVNQL 822
Score = 149 bits (376), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 124/230 (53%), Gaps = 42/230 (18%)
Query: 1539 SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT---SLGITE 1595
S+ F+ +FY+ SRLHH+ST ++VN L+ GVF G E ++K KT +L +T+
Sbjct: 342 SDSSFISDFYSHSRLHHISTWKCELTEFVNTLQRHSSGVFPGREKLKKMKTGRSALVVTD 401
Query: 1596 DEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS-SKVR 1654
++ S SP + IMH+DMDCFFVSVGIR+ P+L+ +PVAV +G + +R
Sbjct: 402 TGNM----SVLSSPRH-QSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLR 456
Query: 1655 EGVDRQAEFDIYRQRTMNRMGLNT---------------------------------REY 1681
G + Q E+ Y+ + + +T R+
Sbjct: 457 PGANPQLEWQYYQNKLVKGKAADTLDSSVWENQDSTQTNGIDSVLSKAEIASCSYEARQV 516
Query: 1682 GLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
G+ NGMF GHA + CP+L+ VPYDF YKEV+ +Y +AS T +IEAVS
Sbjct: 517 GIKNGMFFGHAKQLCPSLQAVPYDFHAYKEVARTMYETLASYTHSIEAVS 566
Score = 136 bits (342), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 90/130 (69%), Gaps = 16/130 (12%)
Query: 1316 KKKGGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
+K GGYM AK +KLE+QF +A G IF GVAI+VNGYT PSA
Sbjct: 15 EKWGGYMAAKVQKLEQQFRSDAALQKDGTSSTIFSGVAIYVNGYTD-----------PSA 63
Query: 1373 EELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKL 1431
EEL+ LMMLHGG YH +Y S+TTHIIA+NLP KIK+LK G+K+I+PEWIV+SI AG+L
Sbjct: 64 EELRKLMMLHGGQYHVYYSRSKTTHIIATNLPTAKIKELK-GEKVIRPEWIVESIKAGRL 122
Query: 1432 LDHKKYLLYT 1441
L + Y LYT
Sbjct: 123 LSYIPYQLYT 132
Score = 50.1 bits (118), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ + +++T+LREW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1159 LAGAIEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1218
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1219 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1250
>gi|260323637|dbj|BAI44263.1| DNA topoisomerase II [Trichophyton rubrum]
gi|260323639|dbj|BAI44264.1| DNA topoisomerase II [Trichophyton mentagrophytes]
Length = 234
Score = 244 bits (624), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 121/239 (50%), Positives = 157/239 (65%), Gaps = 26/239 (10%)
Query: 65 LMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNN 124
+ N T ME RE+++VPGLYKIFDEILVNA DNKQ DP M+ I++T+++E ISVWNN
Sbjct: 1 VYNSTTELMEYREVSFVPGLYKIFDEILVNAADNKQNDPNMSEIRVTLDKEAGEISVWNN 60
Query: 125 GKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEED 184
G+GIPV HK E++++P +IF GHLLTSSNYND ++
Sbjct: 61 GRGIPVEIHKKEQIYIPELIF-------------------------GHLLTSSNYNDMQE 95
Query: 185 KVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTK 244
KVTGGRNGYGAKLCNIFS +F VET+ S+ KK FK W +NMS + +I DD+TK
Sbjct: 96 KVTGGRNGYGAKLCNIFSKEFTVETADSKQKKKFKLTWTNNMSTMGKAKITECKGDDYTK 155
Query: 245 ITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT 303
+TF PD KF M +D D L+ RR YD A T V LNG ++P+K+F+ Y+++YT
Sbjct: 156 VTFKPDFAKFGMDGMDDDFEALVKRRVYDMAG-TCGTAVKLNGTRIPIKSFKKYMEMYT 213
>gi|444517432|gb|ELV11555.1| DNA repair protein REV1 [Tupaia chinensis]
Length = 1165
Score = 244 bits (624), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 133/327 (40%), Positives = 192/327 (58%), Gaps = 47/327 (14%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E V M +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 470 AYKE----VARTMYETLASYTHNIEAVSCDEALVDITEILAETRLTPDEFANAIRTEIKD 525
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVG S+ KL
Sbjct: 526 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGRSMESKL 585
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ++++ +LQ E G K G LY+ CRG DD+ + E +RKS+SAE+NYGI
Sbjct: 586 TSLGIKTCGDLQHMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSISAEINYGI 645
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE +KGK +TLK+MVR AP E +KF GHG+CD I
Sbjct: 646 RFTQPKEAEAFLLSLSEEIQRRLEAAGVKGKRLTLKIMVRKPGAPVETAKFGGHGICDNI 705
Query: 2116 TKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL 2175
++ +L D T S+ + I
Sbjct: 706 ARTVTL----------------------------------DQATDSAKI---------IG 722
Query: 2176 KEVLFIVNKLKVDPVELRGIGIQVSKL 2202
K L + + +K++ ++RG+GIQV++L
Sbjct: 723 KATLSMFHTMKLNISDMRGVGIQVNQL 749
Score = 138 bits (348), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/130 (57%), Positives = 91/130 (70%), Gaps = 16/130 (12%)
Query: 1316 KKKGGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
+K GGYM AK +KLEEQF +A G IF GVAI+VNGYT PSA
Sbjct: 16 EKWGGYMAAKVQKLEEQFRSDAAMQKDGTSSTIFSGVAIYVNGYTD-----------PSA 64
Query: 1373 EELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKL 1431
EEL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+L
Sbjct: 65 EELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRL 123
Query: 1432 LDHKKYLLYT 1441
L + Y LYT
Sbjct: 124 LSYIPYQLYT 133
Score = 96.7 bits (239), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 103/217 (47%), Gaps = 53/217 (24%)
Query: 1518 SKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGV 1577
S + T++ +AP S S+ +F+ +FY++SRLHH+ST ++VN L+ + G+
Sbjct: 327 SSVPTLSKAAP----SVPSRPSDCNFISDFYSRSRLHHISTWKCELTEFVNTLQRQSSGI 382
Query: 1578 FRGIEAIRKWK---TSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHP 1634
F G E ++K K ++L +T+ D+ P+ +
Sbjct: 383 FPGREKLKKLKAGRSALVVTDTADI------------PDSSVW----------------- 413
Query: 1635 ELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALK 1694
E QD S G+D + + + R+ G+ NGMF G+A +
Sbjct: 414 ENQD------------SAQTNGID-----SVLSKAEIASCSYEARQLGIKNGMFFGYAKQ 456
Query: 1695 KCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
CPNL+ VPYDF YKEV+ +Y +AS T NIEAVS
Sbjct: 457 LCPNLQAVPYDFHAYKEVARTMYETLASYTHNIEAVS 493
Score = 49.7 bits (117), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+L+EW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1073 LAGAVEFNDVKTLLKEWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1132
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1133 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1164
>gi|397467494|ref|XP_003805448.1| PREDICTED: DNA repair protein REV1 [Pan paniscus]
Length = 1251
Score = 244 bits (624), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 120/246 (48%), Positives = 167/246 (67%), Gaps = 4/246 (1%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E+ + + +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 545 AYKEVAQTLYETL----ASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEIKD 600
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVGHS+ KL
Sbjct: 601 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGHSMESKL 660
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 661 ASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 720
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR AP E +KF GHG+CD I
Sbjct: 721 RFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKPGAPVETAKFGGHGICDNI 780
Query: 2116 TKSSSL 2121
++ +L
Sbjct: 781 ARTVTL 786
Score = 152 bits (383), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 125/230 (54%), Gaps = 42/230 (18%)
Query: 1539 SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT---SLGITE 1595
S+ +F+ FY+ SRLHH+S ++VN L+ + +G+F G E ++K KT +L +T+
Sbjct: 344 SDCNFISNFYSHSRLHHISMWKCELTEFVNTLQRQSNGIFPGREKLKKMKTGRSALVVTD 403
Query: 1596 DEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS-SKVR 1654
D+ + ++P + IMH+DMDCFFVSVGIR+ P+L+ +PVAV +G + +R
Sbjct: 404 TGDM--SVLNSP---RHQSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLR 458
Query: 1655 EGVDRQAEFDIYRQRTMNRMGLN---------------------------------TREY 1681
G + Q E+ Y+ + + + R+
Sbjct: 459 PGANPQLEWQYYQNKILKGKAADIPDSSLWENPDSAQANGIDSVLSRAEIASCSYEARQL 518
Query: 1682 GLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
G+ NGMF GHA + CPNL+ VPYDF YKEV+ LY +AS T NIEAVS
Sbjct: 519 GIKNGMFFGHAKQLCPNLQAVPYDFHAYKEVAQTLYETLASYTHNIEAVS 568
Score = 137 bits (346), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/127 (58%), Positives = 89/127 (70%), Gaps = 16/127 (12%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSAEEL 1375
GGYM AK +KLEEQF +A G IF GVAI+VNGYT PSAEEL
Sbjct: 19 GGYMAAKVQKLEEQFRSDAAMQKDGTSSTIFSGVAIYVNGYTD-----------PSAEEL 67
Query: 1376 KALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDH 1434
+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+LL +
Sbjct: 68 RKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRLLSY 126
Query: 1435 KKYLLYT 1441
Y LYT
Sbjct: 127 IPYQLYT 133
Score = 50.8 bits (120), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+LREW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1159 LAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1218
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1219 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1250
>gi|7706681|ref|NP_057400.1| DNA repair protein REV1 isoform 1 [Homo sapiens]
gi|59798439|sp|Q9UBZ9.1|REV1_HUMAN RecName: Full=DNA repair protein REV1; AltName: Full=Alpha
integrin-binding protein 80; Short=AIBP80; AltName:
Full=Rev1-like terminal deoxycytidyl transferase
gi|6288763|gb|AAF06731.1|AF151538_1 deoxycytidyl transferase [Homo sapiens]
gi|6601457|gb|AAF18986.1|AF206019_1 REV1 protein [Homo sapiens]
gi|13877124|gb|AAK43708.1|AF357886_1 terminal deoxycytidyl transferase [Homo sapiens]
gi|62988927|gb|AAY24314.1| unknown [Homo sapiens]
gi|119622267|gb|EAX01862.1| REV1-like (yeast), isoform CRA_c [Homo sapiens]
Length = 1251
Score = 244 bits (623), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 120/246 (48%), Positives = 167/246 (67%), Gaps = 4/246 (1%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E+ + + +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 545 AYKEVAQTLYETL----ASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEIKD 600
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVGHS+ KL
Sbjct: 601 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGHSMESKL 660
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 661 ASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 720
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR AP E +KF GHG+CD I
Sbjct: 721 RFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKPGAPVETAKFGGHGICDNI 780
Query: 2116 TKSSSL 2121
++ +L
Sbjct: 781 ARTVTL 786
Score = 152 bits (383), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 125/230 (54%), Gaps = 42/230 (18%)
Query: 1539 SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT---SLGITE 1595
S+ +F+ FY+ SRLHH+S ++VN L+ + +G+F G E ++K KT +L +T+
Sbjct: 344 SDCNFISNFYSHSRLHHISMWKCELTEFVNTLQRQSNGIFPGREKLKKMKTGRSALVVTD 403
Query: 1596 DEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS-SKVR 1654
D+ + ++P + IMH+DMDCFFVSVGIR+ P+L+ +PVAV +G + +R
Sbjct: 404 TGDM--SVLNSP---RHQSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLR 458
Query: 1655 EGVDRQAEFDIYRQRTMNRMGLN---------------------------------TREY 1681
G + Q E+ Y+ + + + R+
Sbjct: 459 PGANPQLEWQYYQNKILKGKAADIPDSSLWENPDSAQANGIDSVLSRAEIASCSYEARQL 518
Query: 1682 GLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
G+ NGMF GHA + CPNL+ VPYDF YKEV+ LY +AS T NIEAVS
Sbjct: 519 GIKNGMFFGHAKQLCPNLQAVPYDFHAYKEVAQTLYETLASYTHNIEAVS 568
Score = 137 bits (346), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/127 (58%), Positives = 89/127 (70%), Gaps = 16/127 (12%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSAEEL 1375
GGYM AK +KLEEQF +A G IF GVAI+VNGYT PSAEEL
Sbjct: 19 GGYMAAKVQKLEEQFRSDAAMQKDGTSSTIFSGVAIYVNGYTD-----------PSAEEL 67
Query: 1376 KALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDH 1434
+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+LL +
Sbjct: 68 RKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRLLSY 126
Query: 1435 KKYLLYT 1441
Y LYT
Sbjct: 127 IPYQLYT 133
Score = 50.8 bits (120), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+LREW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1159 LAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1218
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1219 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1250
>gi|84043967|ref|NP_001032961.1| DNA repair protein REV1 isoform 2 [Homo sapiens]
gi|12483635|dbj|BAB21441.1| Rev1S [Homo sapiens]
gi|119622268|gb|EAX01863.1| REV1-like (yeast), isoform CRA_d [Homo sapiens]
Length = 1250
Score = 244 bits (623), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 120/246 (48%), Positives = 167/246 (67%), Gaps = 4/246 (1%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E+ + + +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 544 AYKEVAQTLYETL----ASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEIKD 599
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVGHS+ KL
Sbjct: 600 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGHSMESKL 659
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 660 ASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 719
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR AP E +KF GHG+CD I
Sbjct: 720 RFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKPGAPVETAKFGGHGICDNI 779
Query: 2116 TKSSSL 2121
++ +L
Sbjct: 780 ARTVTL 785
Score = 152 bits (384), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 128/229 (55%), Gaps = 41/229 (17%)
Query: 1539 SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT---SLGITE 1595
S+ +F+ FY+ SRLHH+S ++VN L+ + +G+F G E ++K KT +L +T+
Sbjct: 344 SDCNFISNFYSHSRLHHISMWKCELTEFVNTLQRQSNGIFPGREKLKKMKTGRSALVVTD 403
Query: 1596 DEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS-SKVR 1654
D+ + ++P + IMH+DMDCFFVSVGIR+ P+L+ +PVAV +G + +R
Sbjct: 404 TGDM--SVLNSP---RHQSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLR 458
Query: 1655 EGVDRQAEFDIYRQRTM------------------NRMGLNT--------------REYG 1682
G + Q E+ Y+ + + G+++ R+ G
Sbjct: 459 PGANPQLEWQYYQNKILKGKADIPDSSLWENPDSAQANGIDSVLSRAEIASCSYEARQLG 518
Query: 1683 LGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
+ NGMF GHA + CPNL+ VPYDF YKEV+ LY +AS T NIEAVS
Sbjct: 519 IKNGMFFGHAKQLCPNLQAVPYDFHAYKEVAQTLYETLASYTHNIEAVS 567
Score = 137 bits (346), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/127 (58%), Positives = 89/127 (70%), Gaps = 16/127 (12%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSAEEL 1375
GGYM AK +KLEEQF +A G IF GVAI+VNGYT PSAEEL
Sbjct: 19 GGYMAAKVQKLEEQFRSDAAMQKDGTSSTIFSGVAIYVNGYTD-----------PSAEEL 67
Query: 1376 KALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDH 1434
+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+LL +
Sbjct: 68 RKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRLLSY 126
Query: 1435 KKYLLYT 1441
Y LYT
Sbjct: 127 IPYQLYT 133
Score = 50.8 bits (120), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+LREW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1158 LAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1217
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1218 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1249
>gi|344255890|gb|EGW11994.1| DNA repair protein REV1 [Cricetulus griseus]
Length = 701
Score = 244 bits (623), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 124/246 (50%), Positives = 164/246 (66%), Gaps = 4/246 (1%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E V AM +S + + AVSCDE +D + +L E LTP +FAS LR I
Sbjct: 22 AYKE----VAQAMYETLASYTHNIEAVSCDEALMDITDILAETKLTPDEFASALRMEIQD 77
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T CT S G GSN L AR+AT+KAKP+GQ+HL P + DF+ ++ LPGVG S+ KL
Sbjct: 78 KTKCTASVGIGSNILLARMATRKAKPDGQYHLQPDEVDDFIRGQLVTRLPGVGRSMESKL 137
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 138 ASLGIKTCGDLQCMAMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 197
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR AP E +KF GHG+CD I
Sbjct: 198 RFTQPKEAEAFLLSLSEEIQRRLEAAGMKGKRLTLKIMVRKPGAPVETAKFGGHGICDNI 257
Query: 2116 TKSSSL 2121
++ +L
Sbjct: 258 ARTITL 263
Score = 65.5 bits (158), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 33/45 (73%)
Query: 1687 MFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
MF GHA + CPNL+ VPYDF YKEV+ +Y +AS T NIEAVS
Sbjct: 1 MFFGHAKQLCPNLQAVPYDFHAYKEVAQAMYETLASYTHNIEAVS 45
Score = 48.9 bits (115), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+L+EW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 609 LAGAVEFGDVKTLLKEWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 668
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 669 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 700
>gi|120660204|gb|AAI30412.1| REV1 homolog (S. cerevisiae) [Homo sapiens]
Length = 1250
Score = 244 bits (623), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 120/246 (48%), Positives = 167/246 (67%), Gaps = 4/246 (1%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E+ + + +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 544 AYKEVAQTLYETL----ASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEIKD 599
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVGHS+ KL
Sbjct: 600 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGHSMESKL 659
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 660 ASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 719
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR AP E +KF GHG+CD I
Sbjct: 720 RFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKPGAPVETAKFGGHGICDNI 779
Query: 2116 TKSSSL 2121
++ +L
Sbjct: 780 ARTVTL 785
Score = 152 bits (384), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 128/229 (55%), Gaps = 41/229 (17%)
Query: 1539 SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT---SLGITE 1595
S+ +F+ FY+ SRLHH+S ++VN L+ + +G+F G E ++K KT +L +T+
Sbjct: 344 SDCNFISNFYSHSRLHHISMWKCELTEFVNTLQRQSNGIFPGREKLKKMKTGRSALVVTD 403
Query: 1596 DEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS-SKVR 1654
D+ + ++P + IMH+DMDCFFVSVGIR+ P+L+ +PVAV +G + +R
Sbjct: 404 TGDM--SVLNSP---RHQSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLR 458
Query: 1655 EGVDRQAEFDIYRQRTM------------------NRMGLNT--------------REYG 1682
G + Q E+ Y+ + + G+++ R+ G
Sbjct: 459 PGANPQLEWQYYQNKILKGKADIPDSSLWENPDSAQANGIDSVLSRAEIASCSYEARQLG 518
Query: 1683 LGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
+ NGMF GHA + CPNL+ VPYDF YKEV+ LY +AS T NIEAVS
Sbjct: 519 IKNGMFFGHAKQLCPNLQAVPYDFHAYKEVAQTLYETLASYTHNIEAVS 567
Score = 137 bits (346), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/127 (58%), Positives = 89/127 (70%), Gaps = 16/127 (12%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSAEEL 1375
GGYM AK +KLEEQF +A G IF GVAI+VNGYT PSAEEL
Sbjct: 19 GGYMAAKVQKLEEQFRSDAAMQKDGTSSTIFSGVAIYVNGYTD-----------PSAEEL 67
Query: 1376 KALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDH 1434
+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+LL +
Sbjct: 68 RKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRLLSY 126
Query: 1435 KKYLLYT 1441
Y LYT
Sbjct: 127 IPYQLYT 133
Score = 50.8 bits (120), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+LREW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1158 LAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1217
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1218 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1249
>gi|358414319|ref|XP_591379.4| PREDICTED: DNA repair protein REV1, partial [Bos taurus]
Length = 773
Score = 244 bits (623), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 120/246 (48%), Positives = 168/246 (68%), Gaps = 4/246 (1%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E V M +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 65 AYKE----VAQTMYETLASYTHDIEAVSCDEALVDITEILAETRLTPDEFANAVRMEIKD 120
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVG S+ KL
Sbjct: 121 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGRSMESKL 180
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G+K G LY+ CRG DD+ + E +RKS+SAE+NYGI
Sbjct: 181 MSLGIRTCGDLQYMTMAKLQKEFGSKTGQMLYRFCRGLDDRPVRTEKERKSISAEINYGI 240
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE V MKGK +TLK+MVR AP E++K+ GHG+CD
Sbjct: 241 RFSQPKEAEAFLLSLSEEIQRRLEAVGMKGKRLTLKIMVRKPGAPVESAKYGGHGICDIT 300
Query: 2116 TKSSSL 2121
T++ +L
Sbjct: 301 TRTVTL 306
Score = 68.9 bits (167), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 1678 TREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
R+ G+ NGM+ G+A + CPNL+ VPYDF YKEV+ +Y +AS T +IEAVS
Sbjct: 35 ARQVGIRNGMYFGYAKQLCPNLQAVPYDFHAYKEVAQTMYETLASYTHDIEAVS 88
Score = 51.6 bits (122), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 1794 DMSTSILDTTTSHILSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLN 1852
D+STS+ + L+ V +++T+LREW+ S P DI +Y ++L+EE+ L
Sbjct: 669 DVSTSVRPPAPN--LAGAVEFSDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLE 726
Query: 1853 PIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +++++++R + + +VW A+ +L VQ ++ S K+
Sbjct: 727 KLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 772
>gi|4468913|emb|CAB38231.1| alpha integrin binding protein 80 [Homo sapiens]
Length = 774
Score = 244 bits (623), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 120/246 (48%), Positives = 167/246 (67%), Gaps = 4/246 (1%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E+ + + +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 68 AYKEVAQTLYETL----ASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEIKD 123
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVGHS+ KL
Sbjct: 124 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGHSMESKL 183
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 184 ASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 243
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR AP E +KF GHG+CD I
Sbjct: 244 RFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKPGAPVETAKFGGHGICDNI 303
Query: 2116 TKSSSL 2121
++ +L
Sbjct: 304 ARTVTL 309
Score = 75.5 bits (184), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 39/54 (72%)
Query: 1678 TREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
R+ G+ NGMF GHA + CPNL+ VPYDF YKEV+ LY +AS T NIEAVS
Sbjct: 38 ARQLGIKNGMFFGHAKQLCPNLQAVPYDFHAYKEVAQTLYETLASYTHNIEAVS 91
Score = 51.2 bits (121), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+LREW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 682 LAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 741
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 742 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 773
>gi|354482384|ref|XP_003503378.1| PREDICTED: DNA repair protein REV1 [Cricetulus griseus]
Length = 1251
Score = 244 bits (623), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 189/327 (57%), Gaps = 47/327 (14%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E V AM +S + + AVSCDE +D + +L E LTP +FAS LR I
Sbjct: 544 AYKE----VAQAMYETLASYTHNIEAVSCDEALMDITDILAETKLTPDEFASALRMEIQD 599
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T CT S G GSN L AR+AT+KAKP+GQ+HL P + DF+ ++ LPGVG S+ KL
Sbjct: 600 KTKCTASVGIGSNILLARMATRKAKPDGQYHLQPDEVDDFIRGQLVTRLPGVGRSMESKL 659
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 660 ASLGIKTCGDLQCMAMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 719
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR AP E +KF GHG+CD I
Sbjct: 720 RFTQPKEAEAFLLSLSEEIQRRLEAAGMKGKRLTLKIMVRKPGAPVETAKFGGHGICDNI 779
Query: 2116 TKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL 2175
++ +L D T S+ + I
Sbjct: 780 ARTITL----------------------------------DQATDSAKV---------IG 796
Query: 2176 KEVLFIVNKLKVDPVELRGIGIQVSKL 2202
K L + + +K++ ++RG+GI V++L
Sbjct: 797 KATLNMFHTMKLNISDMRGVGIHVNQL 823
Score = 157 bits (397), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 127/230 (55%), Gaps = 42/230 (18%)
Query: 1539 SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT---SLGITE 1595
S+ +F+ +FY+ SRLHH+ST ++VN L+ + G+F G E ++K KT SL +T+
Sbjct: 343 SDYNFISDFYSHSRLHHISTWKCELTEFVNTLQRQSSGIFPGREKLKKLKTGRSSLVVTD 402
Query: 1596 DEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS-SKVR 1654
++ S S + +MH+DMDCFFVSVGIR P+L+ +PVAV +G + +R
Sbjct: 403 TGNMSVM-----SSSRHQSCVMHVDMDCFFVSVGIRDRPDLKGKPVAVTSNRGTGRAPLR 457
Query: 1655 EGVDRQAEFDIYR-------------------QRTMNRMGLNT--------------REY 1681
G + Q E+ Y+ Q + G+++ R++
Sbjct: 458 PGANPQLEWQYYQNKILKGKAADIPDSSVWENQHSTQTNGIDSVLSKAEIASCSYEARQF 517
Query: 1682 GLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
G+ NGMF GHA + CPNL+ VPYDF YKEV+ +Y +AS T NIEAVS
Sbjct: 518 GIKNGMFFGHAKQLCPNLQAVPYDFHAYKEVAQAMYETLASYTHNIEAVS 567
Score = 139 bits (351), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/130 (57%), Positives = 91/130 (70%), Gaps = 16/130 (12%)
Query: 1316 KKKGGYMEAKKRKLEEQFELEANSDSRG---GIFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
+K GGYM AK +KLEEQF +A G IF GVAI+VNGYT PSA
Sbjct: 16 EKWGGYMAAKVQKLEEQFRSDAAKQKDGTPSAIFSGVAIYVNGYTD-----------PSA 64
Query: 1373 EELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKL 1431
EEL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+L
Sbjct: 65 EELRNLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRL 123
Query: 1432 LDHKKYLLYT 1441
L + Y LYT
Sbjct: 124 LSYIPYQLYT 133
Score = 48.9 bits (115), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+L+EW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1159 LAGAVEFGDVKTLLKEWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1218
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1219 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1250
>gi|119622266|gb|EAX01861.1| REV1-like (yeast), isoform CRA_b [Homo sapiens]
Length = 1115
Score = 244 bits (623), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 120/246 (48%), Positives = 167/246 (67%), Gaps = 4/246 (1%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E+ + + +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 474 AYKEVAQTLYETL----ASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEIKD 529
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVGHS+ KL
Sbjct: 530 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGHSMESKL 589
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 590 ASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 649
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR AP E +KF GHG+CD I
Sbjct: 650 RFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKPGAPVETAKFGGHGICDNI 709
Query: 2116 TKSSSL 2121
++ +L
Sbjct: 710 ARTVTL 715
Score = 152 bits (384), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 128/229 (55%), Gaps = 41/229 (17%)
Query: 1539 SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT---SLGITE 1595
S+ +F+ FY+ SRLHH+S ++VN L+ + +G+F G E ++K KT +L +T+
Sbjct: 274 SDCNFISNFYSHSRLHHISMWKCELTEFVNTLQRQSNGIFPGREKLKKMKTGRSALVVTD 333
Query: 1596 DEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS-SKVR 1654
D+ + ++P + IMH+DMDCFFVSVGIR+ P+L+ +PVAV +G + +R
Sbjct: 334 TGDM--SVLNSP---RHQSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLR 388
Query: 1655 EGVDRQAEFDIYRQRTM------------------NRMGLNT--------------REYG 1682
G + Q E+ Y+ + + G+++ R+ G
Sbjct: 389 PGANPQLEWQYYQNKILKGKADIPDSSLWENPDSAQANGIDSVLSRAEIASCSYEARQLG 448
Query: 1683 LGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
+ NGMF GHA + CPNL+ VPYDF YKEV+ LY +AS T NIEAVS
Sbjct: 449 IKNGMFFGHAKQLCPNLQAVPYDFHAYKEVAQTLYETLASYTHNIEAVS 497
Score = 89.4 bits (220), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 53/64 (82%), Gaps = 2/64 (3%)
Query: 1379 MMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY 1437
MMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+LL + Y
Sbjct: 1 MMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRLLSYIPY 59
Query: 1438 LLYT 1441
LYT
Sbjct: 60 QLYT 63
>gi|71297084|gb|AAH37734.1| REV1 protein [Homo sapiens]
Length = 1114
Score = 244 bits (622), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 120/246 (48%), Positives = 167/246 (67%), Gaps = 4/246 (1%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E+ + + +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 473 AYKEVAQTLYETL----ASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEIKD 528
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVGHS+ KL
Sbjct: 529 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGHSMESKL 588
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 589 ASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 648
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR AP E +KF GHG+CD I
Sbjct: 649 RFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKPGAPVETAKFGGHGICDNI 708
Query: 2116 TKSSSL 2121
++ +L
Sbjct: 709 ARTVTL 714
Score = 152 bits (385), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 128/229 (55%), Gaps = 41/229 (17%)
Query: 1539 SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT---SLGITE 1595
S+ +F+ FY+ SRLHH+S ++VN L+ + +G+F G E ++K KT +L +T+
Sbjct: 273 SDCNFISNFYSHSRLHHISMWKCELTEFVNTLQRQSNGIFPGREKLKKMKTGRSALVVTD 332
Query: 1596 DEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS-SKVR 1654
D+ + ++P + IMH+DMDCFFVSVGIR+ P+L+ +PVAV +G + +R
Sbjct: 333 TGDM--SVLNSP---RHQSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLR 387
Query: 1655 EGVDRQAEFDIYRQRTM------------------NRMGLNT--------------REYG 1682
G + Q E+ Y+ + + G+++ R+ G
Sbjct: 388 PGANPQLEWQYYQNKILKGKADIPDSSLWENPDSAQANGIDSVLSRAEIASCSYEARQLG 447
Query: 1683 LGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
+ NGMF GHA + CPNL+ VPYDF YKEV+ LY +AS T NIEAVS
Sbjct: 448 IKNGMFFGHAKQLCPNLQAVPYDFHAYKEVAQTLYETLASYTHNIEAVS 496
Score = 87.0 bits (214), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 52/63 (82%), Gaps = 2/63 (3%)
Query: 1380 MLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYL 1438
MLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+LL + Y
Sbjct: 1 MLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRLLSYIPYQ 59
Query: 1439 LYT 1441
LYT
Sbjct: 60 LYT 62
>gi|359069919|ref|XP_003586659.1| PREDICTED: DNA repair protein REV1 [Bos taurus]
Length = 1263
Score = 243 bits (621), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 120/246 (48%), Positives = 168/246 (68%), Gaps = 4/246 (1%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E V M +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 555 AYKE----VAQTMYETLASYTHDIEAVSCDEALVDITEILAETRLTPDEFANAVRMEIKD 610
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVG S+ KL
Sbjct: 611 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGRSMESKL 670
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G+K G LY+ CRG DD+ + E +RKS+SAE+NYGI
Sbjct: 671 MSLGIRTCGDLQYMTMAKLQKEFGSKTGQMLYRFCRGLDDRPVRTEKERKSISAEINYGI 730
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE V MKGK +TLK+MVR AP E++K+ GHG+CD
Sbjct: 731 RFSQPKEAEAFLLSLSEEIQRRLEAVGMKGKRLTLKIMVRKPGAPVESAKYGGHGICDIT 790
Query: 2116 TKSSSL 2121
T++ +L
Sbjct: 791 TRTVTL 796
Score = 147 bits (370), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 137/257 (53%), Gaps = 42/257 (16%)
Query: 1512 TVKTKESKLETVNISAP-KPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNEL 1570
TV+ S T ++ +P + + S S+ +F+ +FY++SRLHH+S ++VN L
Sbjct: 327 TVQGPSSTKSTSSVPSPSRGRPSGPPRPSDFNFISDFYSRSRLHHISAWKWELTEFVNAL 386
Query: 1571 REKHDGVFRGIEAIRKWK---TSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVS 1627
+++ GVF G E ++K K ++L +T+ ++ S SP + IMH+DMDCFFVS
Sbjct: 387 QKQSSGVFPGREKLKKMKAGRSALVVTDTGNM----SVLSSPRH-QSCIMHVDMDCFFVS 441
Query: 1628 VGIRHHPELQDEPVAVAHGKGNS-SKVREGVDRQAEFDIYRQRTMN-------------- 1672
VGIR+ P+L+ +PVAV +G + +R G + Q E+ Y+ + +
Sbjct: 442 VGIRNRPDLKGKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKILRGKAEIPDPSTWESQ 501
Query: 1673 ------------------RMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSY 1714
R+ G+ NGM+ G+A + CPNL+ VPYDF YKEV+
Sbjct: 502 DSAQINGIDSVLSKAEIASCSYEARQVGIRNGMYFGYAKQLCPNLQAVPYDFHAYKEVAQ 561
Query: 1715 CLYNLIASLTLNIEAVS 1731
+Y +AS T +IEAVS
Sbjct: 562 TMYETLASYTHDIEAVS 578
Score = 103 bits (258), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 96/159 (60%), Gaps = 16/159 (10%)
Query: 1331 EQFELEANSDSRGGIFQGVAIFVNGYTKH-CMMLDAYYIVPSAEELKALMMLHGGIYH-H 1388
E F L+ ++ G I + +K C +++ + PSAEEL+ LMMLHGG YH +
Sbjct: 34 ESFSLDISNTGLGDISVEAGVISKQVSKQACFIIN--FTDPSAEELRKLMMLHGGQYHVY 91
Query: 1389 YESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYLLYTGTDAKPL 1448
Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+LL Y LY+ KP
Sbjct: 92 YSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRLLSCIPYQLYS----KPS 146
Query: 1449 TKLLQKSYFENTEAPCCSKS--LVETSSHTSTVSDSVDN 1485
+ +QKS N P C L SS T ++D V++
Sbjct: 147 S--VQKSLNFN---PVCKPEDPLPGPSSITKQLNDRVNH 180
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 1794 DMSTSILDTTTSHILSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLN 1852
D+STS+ + L+ V +++T+LREW+ S P DI +Y ++L+EE+ L
Sbjct: 1159 DVSTSVRPPAPN--LAGAVEFSDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLE 1216
Query: 1853 PIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +++++++R + + +VW A+ +L VQ ++ S K+
Sbjct: 1217 KLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1262
>gi|440908918|gb|ELR58888.1| DNA repair protein REV1 [Bos grunniens mutus]
Length = 1254
Score = 243 bits (621), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 120/246 (48%), Positives = 168/246 (68%), Gaps = 4/246 (1%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E V M +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 545 AYKE----VAQTMYETLASYTHDIEAVSCDEALVDITEILAETRLTPDEFANAVRMEIKD 600
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVG S+ KL
Sbjct: 601 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGRSMESKL 660
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G+K G LY+ CRG DD+ + E +RKS+SAE+NYGI
Sbjct: 661 MSLGIRTCGDLQYMTMAKLQKEFGSKTGQMLYRFCRGLDDRPVRTEKERKSISAEINYGI 720
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE V MKGK +TLK+MVR AP E++K+ GHG+CD
Sbjct: 721 RFSQPKEAEAFLLSLSEEIQRRLEAVGMKGKRLTLKIMVRKPGAPVESAKYGGHGICDIT 780
Query: 2116 TKSSSL 2121
T++ +L
Sbjct: 781 TRTVTL 786
Score = 146 bits (369), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 137/258 (53%), Gaps = 43/258 (16%)
Query: 1512 TVKTKESKLETVNISAP-KPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNEL 1570
TV+ S T ++ +P + + S S+ +F+ +FY++SRLHH+S ++VN L
Sbjct: 316 TVQGPSSTKSTSSVPSPSRGRPSGPPRPSDFNFISDFYSRSRLHHISAWKWELTEFVNAL 375
Query: 1571 REKHDGVFRGIEAIRKWK---TSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVS 1627
+++ GVF G E ++K K ++L +T+ ++ S SP + IMH+DMDCFFVS
Sbjct: 376 QKQSSGVFPGREKLKKMKAGRSALVVTDTGNM----SVLSSPRH-QSCIMHVDMDCFFVS 430
Query: 1628 VGIRHHPELQDEPVAVAHGKGNS-SKVREGVDRQAEFDIYRQRTMN-------------- 1672
VGIR+ P+L+ +PVAV +G + +R G + Q E+ Y+ + +
Sbjct: 431 VGIRNRPDLKGKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKILRGKAAEIPDPSTWEG 490
Query: 1673 -------------------RMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVS 1713
R+ G+ NGM+ G+A + CPNL+ VPYDF YKEV+
Sbjct: 491 QDSAQINGIDSVLSKAEIASCSYEARQVGIRNGMYFGYAKQLCPNLQAVPYDFHAYKEVA 550
Query: 1714 YCLYNLIASLTLNIEAVS 1731
+Y +AS T +IEAVS
Sbjct: 551 QTMYETLASYTHDIEAVS 568
Score = 135 bits (340), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/176 (49%), Positives = 110/176 (62%), Gaps = 27/176 (15%)
Query: 1316 KKKGGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
+K GGYM AK +KLE+QF +A G IF GVAI+VNGYT PSA
Sbjct: 15 EKWGGYMAAKVQKLEQQFRSDAAIQKDGASSTIFSGVAIYVNGYTD-----------PSA 63
Query: 1373 EELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKL 1431
EEL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+L
Sbjct: 64 EELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRL 122
Query: 1432 LDHKKYLLYTGTDAKPLTKLLQKSYFENTEAPCCSKS--LVETSSHTSTVSDSVDN 1485
L Y LY+ KP + +QKS N P C L SS T ++D V++
Sbjct: 123 LSCIPYQLYS----KPSS--VQKSLNFN---PVCKPEDPLPGPSSITKQLNDRVNH 169
Score = 51.6 bits (122), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 1794 DMSTSILDTTTSHILSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLN 1852
D+STS+ + L+ V +++T+LREW+ S P DI +Y ++L+EE+ L
Sbjct: 1150 DVSTSVRPPAPN--LAGAVEFSDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLE 1207
Query: 1853 PIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +++++++R + + +VW A+ +L VQ ++ S K+
Sbjct: 1208 KLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1253
>gi|441643443|ref|XP_003274893.2| PREDICTED: DNA repair protein REV1 [Nomascus leucogenys]
Length = 1250
Score = 243 bits (621), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 119/246 (48%), Positives = 167/246 (67%), Gaps = 4/246 (1%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E+ + + +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 544 AYKEVARTLYETL----ASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEIKD 599
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT++AKP+GQ+HL P+ + DF+ +++LPGVGHS+ KL
Sbjct: 600 QTKCAASVGIGSNILLARMATRRAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGHSMESKL 659
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 660 ASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 719
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR AP E +KF GHG+CD I
Sbjct: 720 RFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKPGAPVETAKFGGHGICDNI 779
Query: 2116 TKSSSL 2121
++ +L
Sbjct: 780 ARTVTL 785
Score = 152 bits (385), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/250 (36%), Positives = 136/250 (54%), Gaps = 45/250 (18%)
Query: 1518 SKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGV 1577
S + T + +AP S S+ +F+ FY+ SRLHH+S ++VN L+ + +G+
Sbjct: 327 SAVSTFSKAAP----SVPSKPSDCNFISNFYSHSRLHHISMWKCELTEFVNTLQRQSNGI 382
Query: 1578 FRGIEAIRKWKT---SLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHP 1634
F G E ++K KT +L +T+ D+ + ++P + IMH+DMDCFFVSVGIR+ P
Sbjct: 383 FPGREKLKKMKTGRSALVVTDTGDM--SVLNSP---RHQSCIMHVDMDCFFVSVGIRNRP 437
Query: 1635 ELQDEPVAVAHGKGNS-SKVREGVDRQAEFDIYRQRTM------------------NRMG 1675
+L+ +PVAV +G + +R G + Q E+ Y+ + + G
Sbjct: 438 DLKGKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKILKGKADIPDSSLWENPDSAQANG 497
Query: 1676 LNT--------------REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIA 1721
+++ R+ G+ NGMF GHA + CPNL+ VPYDF YKEV+ LY +A
Sbjct: 498 IDSVLSRAEIASCSYEARQLGIKNGMFFGHAKQLCPNLQAVPYDFHAYKEVARTLYETLA 557
Query: 1722 SLTLNIEAVS 1731
S T NIEAVS
Sbjct: 558 SYTHNIEAVS 567
Score = 137 bits (346), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/127 (58%), Positives = 89/127 (70%), Gaps = 16/127 (12%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSAEEL 1375
GGYM AK +KLEEQF +A G IF GVAI+VNGYT PSAEEL
Sbjct: 19 GGYMAAKVQKLEEQFRSDAAMQKDGTSSTIFSGVAIYVNGYTD-----------PSAEEL 67
Query: 1376 KALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDH 1434
+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+LL +
Sbjct: 68 RKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRLLSY 126
Query: 1435 KKYLLYT 1441
Y LYT
Sbjct: 127 IPYQLYT 133
Score = 50.8 bits (120), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+LREW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1158 LAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1217
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1218 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1249
>gi|55728560|emb|CAH91022.1| hypothetical protein [Pongo abelii]
Length = 1003
Score = 243 bits (620), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 121/246 (49%), Positives = 167/246 (67%), Gaps = 4/246 (1%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E+ + + +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 475 AYKEVARTLYETL----ASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEIKD 530
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T CT S G GSN L AR+AT+KAKP+GQ HL P+ + DF+ +++LPGVGHS+ KL
Sbjct: 531 QTKCTASVGIGSNILLARMATRKAKPDGQDHLKPEEVDDFIRGQLVTNLPGVGHSMESKL 590
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 591 ASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 650
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR AP E +KF GHG+CD I
Sbjct: 651 RFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKPGAPVETAKFGGHGICDNI 710
Query: 2116 TKSSSL 2121
++ +L
Sbjct: 711 ARTVTL 716
Score = 152 bits (384), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 125/230 (54%), Gaps = 42/230 (18%)
Query: 1539 SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT---SLGITE 1595
S+ +F+ FY+ SRLHH+S ++VN L+ + +G+F G E ++K KT +L +T+
Sbjct: 274 SDCNFISNFYSHSRLHHISMWKCELTEFVNTLQRQSNGIFPGREKLKKMKTGRSALVVTD 333
Query: 1596 DEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS-SKVR 1654
D+ + ++P + IMH+DMDCFFVSVGIR+ P+L+ +PVAV +G + +R
Sbjct: 334 TGDM--SLLNSP---RHQSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLR 388
Query: 1655 EGVDRQAEFDIYRQRTMNRMGLN---------------------------------TREY 1681
G + Q E+ Y+ + + + R+
Sbjct: 389 PGANPQLEWQYYQNKILKGKAADIPDSSLWENPDSAQADGSDSVLSRAEIASCSYEARQL 448
Query: 1682 GLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
G+ NGMF GHA + CPNL+ VPYDF YKEV+ LY +AS T NIEAVS
Sbjct: 449 GIKNGMFFGHAKQLCPNLQAVPYDFHAYKEVARTLYETLASYTHNIEAVS 498
Score = 89.4 bits (220), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 53/64 (82%), Gaps = 2/64 (3%)
Query: 1379 MMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY 1437
MMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+LL + Y
Sbjct: 1 MMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRLLSYIPY 59
Query: 1438 LLYT 1441
LYT
Sbjct: 60 QLYT 63
>gi|237823963|pdb|3GQC|A Chain A, Structure Of Human Rev1-Dna-Dntp Ternary Complex
gi|237823964|pdb|3GQC|B Chain B, Structure Of Human Rev1-Dna-Dntp Ternary Complex
gi|237823965|pdb|3GQC|C Chain C, Structure Of Human Rev1-Dna-Dntp Ternary Complex
gi|237823966|pdb|3GQC|D Chain D, Structure Of Human Rev1-Dna-Dntp Ternary Complex
Length = 504
Score = 243 bits (619), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 121/247 (48%), Positives = 166/247 (67%), Gaps = 4/247 (1%)
Query: 1875 EAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIA 1934
AY+E V + +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 215 HAYKE----VAQTLYETLASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEIK 270
Query: 1935 KETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFK 1994
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVGHS+ K
Sbjct: 271 DQTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGHSMESK 330
Query: 1995 LNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYG 2054
L SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYG
Sbjct: 331 LASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYG 390
Query: 2055 IRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDY 2114
IRF +E E FL L+ E+++RLE MKGK +TLK+MVR AP E +KF GHG+CD
Sbjct: 391 IRFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKPGAPVETAKFGGHGICDN 450
Query: 2115 ITKSSSL 2121
I ++ +L
Sbjct: 451 IARTVTL 457
Score = 150 bits (379), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 124/230 (53%), Gaps = 42/230 (18%)
Query: 1539 SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT---SLGITE 1595
S+ +F+ FY+ SRLHH+S ++VN L+ + +G+F G E ++K KT +L +T+
Sbjct: 15 SDCNFISNFYSHSRLHHISMWKCELTEFVNTLQRQSNGIFPGREKLKKMKTGRSALVVTD 74
Query: 1596 DEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS-SKVR 1654
D+ S SP + IMH+DMDCFFVSVGIR+ P+L+ +PVAV +G + +R
Sbjct: 75 TGDM----SVLNSPRH-QSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLR 129
Query: 1655 EGVDRQAEFDIYRQRTMNRMGLN---------------------------------TREY 1681
G + Q E+ Y+ + + + R+
Sbjct: 130 PGANPQLEWQYYQNKILKGKAADIPDSSLWENPDSAQANGIDSVLSRAEIASCSYEARQL 189
Query: 1682 GLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
G+ NGMF GHA + CPNL+ VPYDF YKEV+ LY +AS T NIEAVS
Sbjct: 190 GIKNGMFFGHAKQLCPNLQAVPYDFHAYKEVAQTLYETLASYTHNIEAVS 239
>gi|351707665|gb|EHB10584.1| DNA repair protein REV1 [Heterocephalus glaber]
Length = 1252
Score = 243 bits (619), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 133/327 (40%), Positives = 193/327 (59%), Gaps = 47/327 (14%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E V M +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 543 AYKE----VARMMYETLASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRVEIKD 598
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVG S+ KL
Sbjct: 599 KTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVANLPGVGRSMESKL 658
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ++++ +LQ E G K G LY+ CRG DD+ + E +RKS+SAE+NYGI
Sbjct: 659 TSLGIKTCGDLQHMTMAKLQKEFGPKIGQMLYRFCRGLDDRPVRTEKERKSISAEINYGI 718
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL +L+ E+++RLE MKGK +TLK+MVR AP E +K+ GHG+CD I
Sbjct: 719 RFTQPKEAEAFLLKLSEEIQRRLEAAGMKGKRLTLKIMVRKPGAPVETAKYGGHGICDNI 778
Query: 2116 TKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL 2175
++ +L D T S+ + I
Sbjct: 779 ARTVTL----------------------------------DQATDSAKI---------IG 795
Query: 2176 KEVLFIVNKLKVDPVELRGIGIQVSKL 2202
K L + + +K++ ++RG+GIQV++L
Sbjct: 796 KATLNMFHTMKLNISDMRGVGIQVNQL 822
Score = 156 bits (394), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 124/230 (53%), Gaps = 42/230 (18%)
Query: 1539 SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT---SLGITE 1595
S+ F+ +FY+ SRLHH+ST ++VN L+ + GVF G E ++K KT +L +T+
Sbjct: 342 SDCSFISDFYSHSRLHHISTWKCELTEFVNTLQRQSSGVFPGREKLKKMKTGRSALVVTD 401
Query: 1596 DEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS-SKVR 1654
++ S P+ IMH+DMDCFFVSVGIR+ P+L+ +PVAV +G+ + +R
Sbjct: 402 TGNMSVL-----SSPRPQSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGSGRAPLR 456
Query: 1655 EGVDRQAEFDIYRQRTMNRMGLN---------------------------------TREY 1681
G + Q E+ Y+ + + + R+
Sbjct: 457 PGANPQLEWQYYQNKILKGKAADIPDSSLWENQDSAQINGIDSVLSKAEIASCSYEARQV 516
Query: 1682 GLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
G+ NGMF GHA + CPNL+ VPYDF YKEV+ +Y +AS T NIEAVS
Sbjct: 517 GIKNGMFFGHAKQLCPNLQAVPYDFHAYKEVARMMYETLASYTHNIEAVS 566
Score = 137 bits (346), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/130 (57%), Positives = 90/130 (69%), Gaps = 16/130 (12%)
Query: 1316 KKKGGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
+K GGYM AK +KLEEQF +A G IF GVAI+VNGYT PSA
Sbjct: 15 EKWGGYMAAKVQKLEEQFRSDAAMQKDGTSSTIFSGVAIYVNGYTD-----------PSA 63
Query: 1373 EELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKL 1431
EEL+ LMMLHGG YH +Y S+TTHIIA+NLP KIK+LK G+K+I+PEWIV+SI AG+L
Sbjct: 64 EELRKLMMLHGGQYHVYYSRSKTTHIIATNLPTAKIKELK-GEKVIRPEWIVESIKAGRL 122
Query: 1432 LDHKKYLLYT 1441
L + Y LYT
Sbjct: 123 LSYIPYQLYT 132
Score = 50.8 bits (120), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+LREW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1160 LAGAVEFSDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1219
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1220 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1251
>gi|426224045|ref|XP_004006184.1| PREDICTED: DNA repair protein REV1 [Ovis aries]
Length = 1247
Score = 242 bits (618), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 121/246 (49%), Positives = 166/246 (67%), Gaps = 4/246 (1%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E V M +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 538 AYKE----VARTMYETLASYTHNIEAVSCDEALVDITEILAETRLTPDEFANAVRMEIKD 593
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVG S+ KL
Sbjct: 594 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGRSMESKL 653
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 654 MSLGIRTCGDLQYLTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 713
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE V MKGK +TLK+MVR AP E +K+ GHG+CD
Sbjct: 714 RFSQPKEAEAFLLNLSEEIQRRLEAVGMKGKRLTLKVMVRKPGAPVETAKYGGHGICDIT 773
Query: 2116 TKSSSL 2121
T++ +L
Sbjct: 774 TRTVTL 779
Score = 148 bits (374), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 130/256 (50%), Gaps = 40/256 (15%)
Query: 1512 TVKTKESKLETVNISAP-KPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNEL 1570
TV+ S T ++ +P + S S+ +F+ +FY++SRLHH+ST ++VN L
Sbjct: 310 TVQGPSSTKSTSSVPSPSRAGPSGPPRPSDCNFISDFYSRSRLHHISTWKCELTEFVNAL 369
Query: 1571 REKHDGVFRGIEAIRKWKT--SLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSV 1628
+ + G+F G E ++K K S + D S SP + IMH+DMDCFFVSV
Sbjct: 370 QRQSSGIFPGREKLKKMKAGRSALVVADTGNMSVLS---SPRH-QSCIMHVDMDCFFVSV 425
Query: 1629 GIRHHPELQDEPVAVAHGKGNS-SKVREGVDRQAEFDIYRQRTMN--------------- 1672
GIR+ P+L+ +PVAV +G + +R G + Q E+ Y+ + +
Sbjct: 426 GIRNRPDLKGKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKILRGKAEIPDPSTWESQD 485
Query: 1673 -----------------RMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYC 1715
R+ G+ NGMF G A + CP+L+ VPYDF YKEV+
Sbjct: 486 SAQINGIDSVLSKAEIASCSYEARQVGIRNGMFFGQAKQLCPSLQAVPYDFHAYKEVART 545
Query: 1716 LYNLIASLTLNIEAVS 1731
+Y +AS T NIEAVS
Sbjct: 546 MYETLASYTHNIEAVS 561
Score = 134 bits (338), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 73/130 (56%), Positives = 90/130 (69%), Gaps = 16/130 (12%)
Query: 1316 KKKGGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
+K GGYM AK +KLE+QF +A G IF GVAI+VNGYT PSA
Sbjct: 15 EKWGGYMAAKVQKLEQQFRSDAAIQKDGTSSTIFSGVAIYVNGYTD-----------PSA 63
Query: 1373 EELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKL 1431
EEL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+L
Sbjct: 64 EELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRL 122
Query: 1432 LDHKKYLLYT 1441
L Y LY+
Sbjct: 123 LSCIPYQLYS 132
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 1794 DMSTSILDTTTSHILSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLN 1852
DMSTS+ + L+ V +++T+LREW+ S P DI +Y ++L+EE+ L
Sbjct: 1143 DMSTSVRPPAPN--LAGAVEFSDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLE 1200
Query: 1853 PIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +++++++R + + +VW A+ +L VQ ++ S K+
Sbjct: 1201 KLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1246
>gi|344283780|ref|XP_003413649.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein REV1-like
[Loxodonta africana]
Length = 1253
Score = 242 bits (618), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 120/246 (48%), Positives = 166/246 (67%), Gaps = 4/246 (1%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E V M +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 545 AYKE----VARTMYETLASYTHNIEAVSCDEALVDITEILAETRLTPDEFANAVRMEIKD 600
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ + +LPGVG S+ KL
Sbjct: 601 QTKCAASIGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVINLPGVGRSMESKL 660
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ++++ +LQ E G K G LY+ CRG DD+ + E +RKS+SAE+NYGI
Sbjct: 661 TSLGIETCGDLQHVTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSISAEINYGI 720
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE +KGK +TLK+MVR AP E +KF GHG+CD I
Sbjct: 721 RFTQPKEAEAFLLSLSEEIQRRLEAASVKGKRLTLKIMVRKPGAPVEPAKFGGHGICDNI 780
Query: 2116 TKSSSL 2121
T++ +L
Sbjct: 781 TRTVTL 786
Score = 150 bits (379), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 121/223 (54%), Gaps = 36/223 (16%)
Query: 1543 FLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEET 1602
F+ +FY++SRLHH+S ++VN L+ + GVF G E ++K KT D T
Sbjct: 348 FISDFYSRSRLHHISMWKCELTEFVNTLQRQSSGVFPGREKLKKMKTGRSALNVTDPGNT 407
Query: 1603 FSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS-SKVREGVDRQA 1661
S + SP + IMH+DMDCFFVSVGIR+ P+L+ +PVAV +G + +R G + Q
Sbjct: 408 -SVSSSPRH-QNCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLRPGANPQL 465
Query: 1662 EFDIYR-------------------QRTMNRMGLNT--------------REYGLGNGMF 1688
E+ Y+ Q + G+N+ R+ G+ NGMF
Sbjct: 466 EWRYYQNKILKGKAAEIPDLPVWETQDSAQTNGINSVLSKAEIASCSYEARQVGIRNGMF 525
Query: 1689 VGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
G+A + CPNL+ VPYDF YKEV+ +Y +AS T NIEAVS
Sbjct: 526 FGYAKQLCPNLQAVPYDFHAYKEVARTMYETLASYTHNIEAVS 568
Score = 117 bits (292), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/136 (51%), Positives = 84/136 (61%), Gaps = 19/136 (13%)
Query: 1316 KKKGGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
+K GGYM AK RKLEEQF +A G IF GVAI+VNGYT PSA
Sbjct: 16 QKWGGYMAAKVRKLEEQFRSDATVQKEGDSSTIFSGVAIYVNGYTD-----------PSA 64
Query: 1373 EELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPE--WIVDSISAG 1429
EEL+ LMM HGG Y +Y S+TTHIIA+NLP+ KI +L+ K I PE W V++I AG
Sbjct: 65 EELRRLMMSHGGQYRVYYSRSKTTHIIATNLPNAKINELR--GKAIWPEXSWKVENIKAG 122
Query: 1430 KLLDHKKYLLYTGTDA 1445
+LL + Y LYT A
Sbjct: 123 RLLSYIPYQLYTKQSA 138
Score = 50.8 bits (120), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+LREW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1161 LAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1220
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1221 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1252
>gi|402891687|ref|XP_003909074.1| PREDICTED: DNA repair protein REV1 [Papio anubis]
Length = 1250
Score = 241 bits (616), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 119/246 (48%), Positives = 167/246 (67%), Gaps = 4/246 (1%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E+ + + +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 545 AYKEVARTLYETL----ASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEIKD 600
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVG S+ KL
Sbjct: 601 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGCSMESKL 660
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 661 ASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 720
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR A AP E +KF GHG+CD +
Sbjct: 721 RFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKAGAPVETAKFGGHGICDNV 780
Query: 2116 TKSSSL 2121
++ +L
Sbjct: 781 ARTVTL 786
Score = 152 bits (385), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 123/230 (53%), Gaps = 42/230 (18%)
Query: 1539 SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT---SLGITE 1595
S+ +F+ FY+ SRLHH+S ++VN L+ + +G+F G E ++K KT +L +T+
Sbjct: 344 SDCNFISNFYSHSRLHHISMWKCELTEFVNTLQRQSNGIFPGREKLKKMKTGRSALVVTD 403
Query: 1596 DEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS-SKVR 1654
D+ S + + IMH+DMDCFFVSVGIR+ P+L+ +PVAV +G + +R
Sbjct: 404 TGDMSVLNS-----TRHQSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLR 458
Query: 1655 EGVDRQAEFDIYRQRTMNRMGLN---------------------------------TREY 1681
G + Q E+ Y+ + + + R+
Sbjct: 459 PGANPQLEWQYYQNKILKGKAADIPDSSLWENPDSAQANGIDSVLSKAEIASCSYEARQL 518
Query: 1682 GLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
G+ NGMF GHA + CPNL+ VPYDF YKEV+ LY +AS T NIEAVS
Sbjct: 519 GIKNGMFFGHAKQLCPNLQAVPYDFHAYKEVARTLYETLASYTHNIEAVS 568
Score = 138 bits (347), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/130 (57%), Positives = 91/130 (70%), Gaps = 16/130 (12%)
Query: 1316 KKKGGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
+K GGYM AK +KLEEQF +A G IF GVAI+VNGYT PSA
Sbjct: 16 EKWGGYMAAKVQKLEEQFRSDAALQKDGTSSTIFSGVAIYVNGYTD-----------PSA 64
Query: 1373 EELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKL 1431
EEL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+L
Sbjct: 65 EELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRL 123
Query: 1432 LDHKKYLLYT 1441
L + Y LYT
Sbjct: 124 LSYIPYQLYT 133
Score = 50.8 bits (120), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+LREW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1158 LAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1217
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1218 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1249
>gi|383418991|gb|AFH32709.1| DNA repair protein REV1 isoform 1 [Macaca mulatta]
Length = 1250
Score = 241 bits (616), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 119/246 (48%), Positives = 167/246 (67%), Gaps = 4/246 (1%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E+ + + +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 545 AYKEVARTLYETL----ASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEIKD 600
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVG S+ KL
Sbjct: 601 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGCSMESKL 660
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 661 ASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 720
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR A AP E +KF GHG+CD +
Sbjct: 721 RFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKAGAPVETAKFGGHGICDNV 780
Query: 2116 TKSSSL 2121
++ +L
Sbjct: 781 ARTVTL 786
Score = 152 bits (383), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 125/230 (54%), Gaps = 42/230 (18%)
Query: 1539 SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT---SLGITE 1595
S+ +F+ FY+ SRLHH+S ++VN L+ + +G+F G E ++K KT +L +T+
Sbjct: 344 SDCNFISNFYSHSRLHHISMWKCELTEFVNTLQRQSNGIFPGREKLKKMKTGRSALVVTD 403
Query: 1596 DEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS-SKVR 1654
D+ + ++P + IMH+DMDCFFVSVGIR+ P+L+ +PVAV +G + +R
Sbjct: 404 TGDM--SVLNSP---RHQSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLR 458
Query: 1655 EGVDRQAEFDIYRQRTMNRMGLN---------------------------------TREY 1681
G + Q E+ Y+ + + + R+
Sbjct: 459 PGANPQLEWQYYQNKILKGKAADIPDSSLWENPDSAQANGIDSVLSKAEIASCSYEARQL 518
Query: 1682 GLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
G+ NGMF GHA + CPNL+ VPYDF YKEV+ LY +AS T NIEAVS
Sbjct: 519 GIKNGMFFGHAKQLCPNLQAVPYDFHAYKEVARTLYETLASYTHNIEAVS 568
Score = 138 bits (347), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/130 (57%), Positives = 91/130 (70%), Gaps = 16/130 (12%)
Query: 1316 KKKGGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
+K GGYM AK +KLEEQF +A G IF GVAI+VNGYT PSA
Sbjct: 16 EKWGGYMAAKVQKLEEQFRSDAALQKDGTSSTIFSGVAIYVNGYTD-----------PSA 64
Query: 1373 EELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKL 1431
EEL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+L
Sbjct: 65 EELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRL 123
Query: 1432 LDHKKYLLYT 1441
L + Y LYT
Sbjct: 124 LSYIPYQLYT 133
Score = 50.8 bits (120), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+LREW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1158 LAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1217
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1218 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1249
>gi|384947544|gb|AFI37377.1| DNA repair protein REV1 isoform 2 [Macaca mulatta]
Length = 1249
Score = 241 bits (616), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 119/246 (48%), Positives = 167/246 (67%), Gaps = 4/246 (1%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E+ + + +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 544 AYKEVARTLYETL----ASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEIKD 599
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVG S+ KL
Sbjct: 600 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGCSMESKL 659
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 660 ASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 719
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR A AP E +KF GHG+CD +
Sbjct: 720 RFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKAGAPVETAKFGGHGICDNV 779
Query: 2116 TKSSSL 2121
++ +L
Sbjct: 780 ARTVTL 785
Score = 152 bits (383), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 128/229 (55%), Gaps = 41/229 (17%)
Query: 1539 SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT---SLGITE 1595
S+ +F+ FY+ SRLHH+S ++VN L+ + +G+F G E ++K KT +L +T+
Sbjct: 344 SDCNFISNFYSHSRLHHISMWKCELTEFVNTLQRQSNGIFPGREKLKKMKTGRSALVVTD 403
Query: 1596 DEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS-SKVR 1654
D+ + ++P + IMH+DMDCFFVSVGIR+ P+L+ +PVAV +G + +R
Sbjct: 404 TGDM--SVLNSP---RHQSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLR 458
Query: 1655 EGVDRQAEFDIYRQRTM------------------NRMGLNT--------------REYG 1682
G + Q E+ Y+ + + G+++ R+ G
Sbjct: 459 PGANPQLEWQYYQNKILKGKADIPDSSLWENPDSAQANGIDSVLSKAEIASCSYEARQLG 518
Query: 1683 LGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
+ NGMF GHA + CPNL+ VPYDF YKEV+ LY +AS T NIEAVS
Sbjct: 519 IKNGMFFGHAKQLCPNLQAVPYDFHAYKEVARTLYETLASYTHNIEAVS 567
Score = 138 bits (347), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/130 (57%), Positives = 91/130 (70%), Gaps = 16/130 (12%)
Query: 1316 KKKGGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
+K GGYM AK +KLEEQF +A G IF GVAI+VNGYT PSA
Sbjct: 16 EKWGGYMAAKVQKLEEQFRSDAALQKDGTSSTIFSGVAIYVNGYTD-----------PSA 64
Query: 1373 EELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKL 1431
EEL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+L
Sbjct: 65 EELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRL 123
Query: 1432 LDHKKYLLYT 1441
L + Y LYT
Sbjct: 124 LSYIPYQLYT 133
Score = 50.8 bits (120), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+LREW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1157 LAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1216
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1217 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1248
>gi|380813554|gb|AFE78651.1| DNA repair protein REV1 isoform 2 [Macaca mulatta]
Length = 1249
Score = 241 bits (616), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 119/246 (48%), Positives = 167/246 (67%), Gaps = 4/246 (1%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E+ + + +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 544 AYKEVARTLYETL----ASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEIKD 599
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVG S+ KL
Sbjct: 600 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGCSMESKL 659
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 660 ASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 719
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR A AP E +KF GHG+CD +
Sbjct: 720 RFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKAGAPVETAKFGGHGICDNV 779
Query: 2116 TKSSSL 2121
++ +L
Sbjct: 780 ARTVTL 785
Score = 152 bits (383), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 128/229 (55%), Gaps = 41/229 (17%)
Query: 1539 SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT---SLGITE 1595
S+ +F+ FY+ SRLHH+S ++VN L+ + +G+F G E ++K KT +L +T+
Sbjct: 344 SDCNFISNFYSHSRLHHISMWKCELTEFVNTLQRQSNGIFPGREKLKKMKTGRSALVVTD 403
Query: 1596 DEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS-SKVR 1654
D+ + ++P + IMH+DMDCFFVSVGIR+ P+L+ +PVAV +G + +R
Sbjct: 404 TGDM--SVLNSP---RHQSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLR 458
Query: 1655 EGVDRQAEFDIYRQRTM------------------NRMGLNT--------------REYG 1682
G + Q E+ Y+ + + G+++ R+ G
Sbjct: 459 PGANPQLEWQYYQNKILKGKADIPDSSLWENPDSAQANGIDSVLSKAEIASCSYEARQLG 518
Query: 1683 LGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
+ NGMF GHA + CPNL+ VPYDF YKEV+ LY +AS T NIEAVS
Sbjct: 519 IKNGMFFGHAKQLCPNLQAVPYDFHAYKEVARTLYETLASYTHNIEAVS 567
Score = 138 bits (347), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/130 (57%), Positives = 91/130 (70%), Gaps = 16/130 (12%)
Query: 1316 KKKGGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
+K GGYM AK +KLEEQF +A G IF GVAI+VNGYT PSA
Sbjct: 16 EKWGGYMAAKVQKLEEQFRSDAALQKDGTSSTIFSGVAIYVNGYTD-----------PSA 64
Query: 1373 EELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKL 1431
EEL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+L
Sbjct: 65 EELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRL 123
Query: 1432 LDHKKYLLYT 1441
L + Y LYT
Sbjct: 124 LSYIPYQLYT 133
Score = 50.8 bits (120), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+LREW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1157 LAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1216
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1217 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1248
>gi|301769163|ref|XP_002920000.1| PREDICTED: DNA repair protein REV1-like [Ailuropoda melanoleuca]
Length = 1253
Score = 241 bits (616), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 132/327 (40%), Positives = 191/327 (58%), Gaps = 47/327 (14%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E V M +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 544 AYKE----VARTMYETLASYTHSIEAVSCDEALVDITEILAETRLTPDEFANAVRMEIKD 599
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +S+LPGVG S+ KL
Sbjct: 600 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVSNLPGVGRSMESKL 659
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
+LG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKS+SAE+NYGI
Sbjct: 660 TALGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSISAEINYGI 719
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE +KGK +TLK+MVR AP E +KF GHG+CD +
Sbjct: 720 RFTQPKEAEAFLLNLSEEIQRRLEAAGVKGKRLTLKVMVRKPGAPVETAKFGGHGICDNV 779
Query: 2116 TKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL 2175
++ +L D T S+ + I
Sbjct: 780 ARTVTL----------------------------------DQATDSAKI---------IG 796
Query: 2176 KEVLFIVNKLKVDPVELRGIGIQVSKL 2202
K L + + +K++ ++RG+GIQV++L
Sbjct: 797 KAALNMFHTMKLNISDMRGVGIQVNQL 823
Score = 146 bits (368), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 159/308 (51%), Gaps = 59/308 (19%)
Query: 1469 LVETSSHTSTVSDSVDNTEESKSEAVNSEESK--------SEAANPIESKQTVKTKESKL 1520
+V+ S ++ +D++ N + S +++S S S P +K T S +
Sbjct: 274 VVQQSPQSTRNTDAMRNPHRTNSFSLSSLHSNTKINGAHYSAVQGPSSTKST-----SSV 328
Query: 1521 ETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRG 1580
T++ +AP S S+ +F+ +FY++SRLHH+S ++VN L+ + G+F G
Sbjct: 329 PTLSKAAP----SVPSKPSDCNFISDFYSRSRLHHISMWKCELTEFVNTLQRQSSGIFPG 384
Query: 1581 IEAIRKWKT---SLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQ 1637
E ++K KT +L +T+ ++ S SP + IMH+DMDCFFVSVGIR+ P+L+
Sbjct: 385 REKLKKMKTGRSALVVTDTGNM----SVLSSPRH-QSCIMHVDMDCFFVSVGIRNRPDLK 439
Query: 1638 DEPVAVAHGKGNS-SKVREGVDRQAEFDIYRQRTM-------------------NRMGLN 1677
+PVAV +G + +R G + Q E+ Y+ + + G++
Sbjct: 440 GKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKVLKGRAAEIPDASLWENQDSAQANGID 499
Query: 1678 T--------------REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASL 1723
+ R+ G+ NGMF G A + CP+L+ VPYDF YKEV+ +Y +AS
Sbjct: 500 SVLSKAEIASCSYEARQVGIRNGMFFGQAKQLCPSLQAVPYDFHAYKEVARTMYETLASY 559
Query: 1724 TLNIEAVS 1731
T +IEAVS
Sbjct: 560 THSIEAVS 567
Score = 135 bits (341), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 90/130 (69%), Gaps = 16/130 (12%)
Query: 1316 KKKGGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
+K GGYM AK +KLEEQF +A G IF GVAI+VNGYT PSA
Sbjct: 16 EKWGGYMAAKVQKLEEQFRSDATIQKDGTSSTIFSGVAIYVNGYTD-----------PSA 64
Query: 1373 EELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKL 1431
EEL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+L
Sbjct: 65 EELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRL 123
Query: 1432 LDHKKYLLYT 1441
L Y LY+
Sbjct: 124 LSCIPYQLYS 133
Score = 49.3 bits (116), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+L+EW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1161 LAGAVEFSDVKTLLKEWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1220
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1221 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1252
>gi|281348468|gb|EFB24052.1| hypothetical protein PANDA_008679 [Ailuropoda melanoleuca]
Length = 1235
Score = 241 bits (615), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 132/327 (40%), Positives = 191/327 (58%), Gaps = 47/327 (14%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E V M +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 526 AYKE----VARTMYETLASYTHSIEAVSCDEALVDITEILAETRLTPDEFANAVRMEIKD 581
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +S+LPGVG S+ KL
Sbjct: 582 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVSNLPGVGRSMESKL 641
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
+LG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKS+SAE+NYGI
Sbjct: 642 TALGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSISAEINYGI 701
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE +KGK +TLK+MVR AP E +KF GHG+CD +
Sbjct: 702 RFTQPKEAEAFLLNLSEEIQRRLEAAGVKGKRLTLKVMVRKPGAPVETAKFGGHGICDNV 761
Query: 2116 TKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL 2175
++ +L D T S+ + I
Sbjct: 762 ARTVTL----------------------------------DQATDSAKI---------IG 778
Query: 2176 KEVLFIVNKLKVDPVELRGIGIQVSKL 2202
K L + + +K++ ++RG+GIQV++L
Sbjct: 779 KAALNMFHTMKLNISDMRGVGIQVNQL 805
Score = 146 bits (368), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 159/308 (51%), Gaps = 59/308 (19%)
Query: 1469 LVETSSHTSTVSDSVDNTEESKSEAVNSEESK--------SEAANPIESKQTVKTKESKL 1520
+V+ S ++ +D++ N + S +++S S S P +K T S +
Sbjct: 256 VVQQSPQSTRNTDAMRNPHRTNSFSLSSLHSNTKINGAHYSAVQGPSSTKST-----SSV 310
Query: 1521 ETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRG 1580
T++ +AP S S+ +F+ +FY++SRLHH+S ++VN L+ + G+F G
Sbjct: 311 PTLSKAAP----SVPSKPSDCNFISDFYSRSRLHHISMWKCELTEFVNTLQRQSSGIFPG 366
Query: 1581 IEAIRKWKT---SLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQ 1637
E ++K KT +L +T+ ++ S SP + IMH+DMDCFFVSVGIR+ P+L+
Sbjct: 367 REKLKKMKTGRSALVVTDTGNM----SVLSSPRH-QSCIMHVDMDCFFVSVGIRNRPDLK 421
Query: 1638 DEPVAVAHGKGNS-SKVREGVDRQAEFDIYRQRTM-------------------NRMGLN 1677
+PVAV +G + +R G + Q E+ Y+ + + G++
Sbjct: 422 GKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKVLKGRAAEIPDASLWENQDSAQANGID 481
Query: 1678 T--------------REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASL 1723
+ R+ G+ NGMF G A + CP+L+ VPYDF YKEV+ +Y +AS
Sbjct: 482 SVLSKAEIASCSYEARQVGIRNGMFFGQAKQLCPSLQAVPYDFHAYKEVARTMYETLASY 541
Query: 1724 TLNIEAVS 1731
T +IEAVS
Sbjct: 542 THSIEAVS 549
Score = 135 bits (340), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/127 (57%), Positives = 88/127 (69%), Gaps = 16/127 (12%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSAEEL 1375
GGYM AK +KLEEQF +A G IF GVAI+VNGYT PSAEEL
Sbjct: 1 GGYMAAKVQKLEEQFRSDATIQKDGTSSTIFSGVAIYVNGYTD-----------PSAEEL 49
Query: 1376 KALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDH 1434
+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+LL
Sbjct: 50 RKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRLLSC 108
Query: 1435 KKYLLYT 1441
Y LY+
Sbjct: 109 IPYQLYS 115
Score = 49.3 bits (116), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+L+EW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1143 LAGAVEFSDVKTLLKEWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1202
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1203 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1234
>gi|327284906|ref|XP_003227176.1| PREDICTED: DNA repair protein REV1-like [Anolis carolinensis]
Length = 1246
Score = 241 bits (615), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 133/328 (40%), Positives = 191/328 (58%), Gaps = 47/328 (14%)
Query: 1875 EAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIA 1934
+AY+E V M +S + + AVSCDE VD +++L E LTP + A +R I
Sbjct: 543 QAYKE----VAQTMYETLASYTHNIEAVSCDEALVDITEILVETGLTPEEIADVIRTEIK 598
Query: 1935 KETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFK 1994
+T C S G GSN L AR+AT+KAKP+GQ+HL + + DF+ N + LPGVG S+ K
Sbjct: 599 DKTKCPASIGIGSNILLARMATRKAKPDGQYHLKSEDVDDFIRNQLIIHLPGVGRSMESK 658
Query: 1995 LNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYG 2054
L+SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RK+VSAE+NYG
Sbjct: 659 LSSLGIKTCGDLQCVTMSKLQKEFGPKTGQMLYRFCRGLDDRPVQREKKRKTVSAEINYG 718
Query: 2055 IRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDY 2114
IRF ++E E FL L+ E++ RLE MKGK +TLK+MVR A AP E +KF GHG+CD
Sbjct: 719 IRFTQSKEAEDFLLSLSEEIQCRLEAAGMKGKRLTLKVMVRKAGAPLEPAKFGGHGICDN 778
Query: 2115 ITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQI 2174
I ++ +L +++K +G
Sbjct: 779 IARTVTL-------------------SHATDSAKVIG----------------------- 796
Query: 2175 LKEVLFIVNKLKVDPVELRGIGIQVSKL 2202
KE+L + + +K++ ++RG+GIQV +L
Sbjct: 797 -KEILNMFHTMKLNISDMRGVGIQVHQL 823
Score = 148 bits (374), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 125/249 (50%), Gaps = 45/249 (18%)
Query: 1525 ISAPKPQ---ASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGI 1581
I AP P +S + N +F+ +FY +SRLHH+ST S F +++N L+ + VF G
Sbjct: 322 IPAPAPSEVDSSPLSRSLNSNFISDFYARSRLHHISTWKSEFTEFINTLQRQSSAVFPGR 381
Query: 1582 EAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPV 1641
E ++K K + + D N ++ + IMH+DMDCFFVSVGIR EL+ +PV
Sbjct: 382 EKLKKLKAGQCMVKKTDSYHLSIMN--TTKHQSCIMHMDMDCFFVSVGIRDRLELKGKPV 439
Query: 1642 AVAHGKGNSSKV--REGVDRQAEFDIYRQRTMN--------------------------- 1672
AV +G S KV R G + Q E Y+ + +N
Sbjct: 440 AVTSNRG-SGKVLLRPGANPQLERQYYQNKLLNCNAEIGELDSADEDSADATQVNGIDFD 498
Query: 1673 ----------RMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIAS 1722
R+ G+ NGMF G A + CPNL+ VPYDF+ YKEV+ +Y +AS
Sbjct: 499 ISVSSMAEIASCSYEARQAGIKNGMFFGQAKRLCPNLQAVPYDFQAYKEVAQTMYETLAS 558
Query: 1723 LTLNIEAVS 1731
T NIEAVS
Sbjct: 559 YTHNIEAVS 567
Score = 134 bits (338), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 89/129 (68%), Gaps = 18/129 (13%)
Query: 1319 GGYMEAKKRKLEEQFELEA-----NSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAE 1373
GGYM AK +KLE+QF +A + GIF GVAI+VNGYT PS++
Sbjct: 20 GGYMSAKVQKLEDQFRSDAAMQLQKDGTSSGIFSGVAIYVNGYTD-----------PSSD 68
Query: 1374 ELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL 1432
EL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+++PEWI DSI AG+LL
Sbjct: 69 ELRHLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVVRPEWITDSIKAGRLL 127
Query: 1433 DHKKYLLYT 1441
+ Y LYT
Sbjct: 128 SYIPYQLYT 136
Score = 50.1 bits (118), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 80/153 (52%), Gaps = 12/153 (7%)
Query: 1748 QEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPSPSPILDMSTSILDTTTSHI 1807
Q+++DD +Q+ ++ E + EP AQ I A++ + T P+L + +
Sbjct: 1105 QKLMDDFLKQEGAVT-ESSQIEP-AQ--ITANTAS---TSISQPLLSAAAK----PQAPN 1153
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++ +L+EW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1154 LAGAVEFNDVKALLKEWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1213
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKIV 1899
+ +VW A+ +L VQ ++ S KI+
Sbjct: 1214 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKIM 1246
Score = 43.1 bits (100), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 1179 ISAPKPQ---ASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
I AP P +S + N +F+ +FY +SRLHH+ST S F +++N L
Sbjct: 322 IPAPAPSEVDSSPLSRSLNSNFISDFYARSRLHHISTWKSEFTEFINTL 370
>gi|149727128|ref|XP_001490149.1| PREDICTED: DNA repair protein REV1 [Equus caballus]
Length = 1254
Score = 240 bits (613), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 132/327 (40%), Positives = 191/327 (58%), Gaps = 47/327 (14%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E V M +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 545 AYKE----VARTMYETLASYTHHIEAVSCDEALVDITEILAETRLTPDEFANAVRMEIKD 600
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVG S+ KL
Sbjct: 601 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEDVDDFIRGQLVTNLPGVGRSMESKL 660
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 661 TSLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 720
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE +KGK +TLK++VR AP E++KF GHG+CD
Sbjct: 721 RFTQPKEAEAFLLNLSEEIQRRLEAAGVKGKRLTLKILVRKPGAPVESAKFGGHGICDNF 780
Query: 2116 TKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL 2175
T++ +L D T S+ + I
Sbjct: 781 TRTITL----------------------------------DQATDSAKI---------IG 797
Query: 2176 KEVLFIVNKLKVDPVELRGIGIQVSKL 2202
K L + + +K++ ++RG+GI V++L
Sbjct: 798 KATLNMFHTMKLNIADMRGVGIHVNQL 824
Score = 145 bits (367), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 153/308 (49%), Gaps = 59/308 (19%)
Query: 1469 LVETSSHTSTVSDSVDNTEESKSEAVNSEESK--------SEAANPIESKQTVKTKESKL 1520
LV+ + +D++ N + S +++S S S P +K T S +
Sbjct: 275 LVQQLQQSVKNTDALRNPHRTNSFSLSSLHSNTKINGAHHSTVQGPSSTKST-----SSI 329
Query: 1521 ETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRG 1580
TV+ +AP S S+ F+ +FY+ SRLHH+S ++V+ L+ + GVF G
Sbjct: 330 PTVSKAAP----SVPSKPSDCSFISDFYSHSRLHHISMWKCELTEFVSTLQRQSSGVFPG 385
Query: 1581 IEAIRKWKT---SLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQ 1637
E ++K KT +L +T+ ++ S SP + IMH+DMDCFFVSVGIR+ P+L+
Sbjct: 386 REKLKKMKTGRSALVVTDTGNM----SVLSSPRH-QSCIMHVDMDCFFVSVGIRNRPDLK 440
Query: 1638 DEPVAVAHGKGNS-SKVREGVDRQAEFDIYRQRTMNRMGLN------------------- 1677
+PVAV +G + +R G + Q E+ Y+ + + +
Sbjct: 441 GKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKVLRGKAADIPDSSLWENQDSAQTNGID 500
Query: 1678 --------------TREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASL 1723
R+ G+ NGMF G+A + CPNL+ VPYDF YKEV+ +Y +AS
Sbjct: 501 SVLSKAEIASCSYEARQVGIKNGMFFGYAKQLCPNLQAVPYDFHAYKEVARTMYETLASY 560
Query: 1724 TLNIEAVS 1731
T +IEAVS
Sbjct: 561 THHIEAVS 568
Score = 138 bits (348), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/130 (57%), Positives = 91/130 (70%), Gaps = 16/130 (12%)
Query: 1316 KKKGGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
+K GGYM AK +KLEEQF +A G IF GVAI+VNGYT PSA
Sbjct: 16 EKWGGYMAAKVQKLEEQFRSDATMQKDGTSSTIFSGVAIYVNGYTD-----------PSA 64
Query: 1373 EELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKL 1431
EEL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+L
Sbjct: 65 EELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRL 123
Query: 1432 LDHKKYLLYT 1441
L + Y LYT
Sbjct: 124 LSYIPYQLYT 133
Score = 49.7 bits (117), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+L+EW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1162 LAGAVEFSDVKTLLKEWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1221
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1222 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1253
>gi|8467995|dbj|BAA96596.1| putative topoisomerase II [Oryza sativa Japonica Group]
gi|125569648|gb|EAZ11163.1| hypothetical protein OsJ_01012 [Oryza sativa Japonica Group]
Length = 421
Score = 240 bits (612), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 153/416 (36%), Positives = 219/416 (52%), Gaps = 67/416 (16%)
Query: 43 EHILLRPDTYIGSVEP-ITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQR 101
E IL RPD YIGS E T+T W+ + +M RE+TY PGL++IFDE+LV+A NK+R
Sbjct: 29 ERILRRPDGYIGSPEKRSTQTFWI--NDGYYMVPREVTYRPGLHRIFDEVLVHAASNKRR 86
Query: 102 DPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKV 161
DP M+ + + V+ ++SV+ NG+G+ VE DE+ V
Sbjct: 87 DPSMDTLSVEVDVVERSVSVFYNGRGVVPVELVDEERGV--------------------- 125
Query: 162 TGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQV 221
P M FGHL +D+ G GYG KL N+FS++F++ET+ K +KQV
Sbjct: 126 --YAPEMFFGHLHDDDEEDDQNKATNDGGGGYGVKLANLFSTEFIIETADGCRMKKYKQV 183
Query: 222 WKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKD 280
+ +NM K + P I ++ +++T ITF PDL F MT L++D V L+ +R D A D
Sbjct: 184 FSENMGKKSVPHITDCNQGENWTIITFKPDLAGFNMTYLEEDHVTLMWKRVVDMAGILGD 243
Query: 281 -VKVFLNGEKLPVKNFQDYVKLYTDR--QDEDGDPVKIIYENVNPRWEVAIAPSDRG-FQ 336
V+V +G +L + +F DYV+LY D D G +YE +N EV ++ SD G FQ
Sbjct: 244 SVQVEWDGVRLRINSFNDYVRLYIDSPVSDRSGAGFPRVYEKLNDWCEVCLSLSDDGHFQ 303
Query: 337 QVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQ 396
QVSFVN T KGG HVD V + I ++ ++ + ++ C NV +
Sbjct: 304 QVSFVNGFETLKGGTHVDYVTELITTHLMNLLNEHYEE--CNF---------NVDD---- 348
Query: 397 MAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS 452
VK ++W+F+N +I NPTFDSQTKE +T G GS
Sbjct: 349 ---------------------VKRYLWVFLNVIIDNPTFDSQTKETLTTPPGRLGS 383
>gi|301616953|ref|XP_002937904.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein REV1-like [Xenopus
(Silurana) tropicalis]
Length = 1245
Score = 240 bits (612), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 111/223 (49%), Positives = 158/223 (70%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDE D + +L E LTP + ++ +R + ++TGC S G GSN L AR+AT++
Sbjct: 568 IEAVSCDEALADITGILTETRLTPDEASNAIRTEVKEKTGCAASVGIGSNILLARMATRR 627
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKP+GQ+HL P+ + DF+ +++LPGVG ++ +KL+ LG +TCGDLQNI++ +LQ E
Sbjct: 628 AKPDGQYHLKPEEVDDFIRGQLVNNLPGVGRTIEYKLSCLGVKTCGDLQNITMAKLQKEF 687
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
G K G LY+ CRG DD+ + E +RKSVSAE+NYGIRF E E FL L+ E+++RL
Sbjct: 688 GPKTGQMLYRFCRGLDDRPIRKEKERKSVSAEINYGIRFTQTSEAEAFLINLSEEIQRRL 747
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
E V MKGK +TLK+MVR A AP E +K+ GHG+CD + ++ +L
Sbjct: 748 EVVGMKGKKLTLKIMVRKAGAPIEPAKYGGHGICDNVARTVTL 790
Score = 123 bits (308), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 87/129 (67%), Gaps = 18/129 (13%)
Query: 1319 GGYMEAKKRKLEEQFELEA-----NSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAE 1373
GGYM AK +KL+EQF +A + IF GV+I+VNGYT P+A+
Sbjct: 20 GGYMAAKVQKLDEQFRSDAPLQQQKDGTSSKIFNGVSIYVNGYTD-----------PTAD 68
Query: 1374 ELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL 1432
+L+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+L+ +K+++PEWI +SI AG+LL
Sbjct: 69 QLRHLMMLHGGQYHVYYSRSKTTHIIATNLPNNKIKELR-DEKVVRPEWITESIKAGRLL 127
Query: 1433 DHKKYLLYT 1441
+ Y LYT
Sbjct: 128 SYVPYQLYT 136
Score = 94.4 bits (233), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 102/213 (47%), Gaps = 26/213 (12%)
Query: 1481 DSVDNTEESKSEAVNSEESKSEAANP-----IESKQTVKTKESKLETVNISAPKPQASST 1535
D VDNT+ + + NP + S + T SK+ + S P P ++ST
Sbjct: 266 DCVDNTDCTVEHLQPNSRQTDVFCNPHRTSSLPSSSCLHTN-SKINGAHHSLPGPSSTST 324
Query: 1536 KNAS-------------NEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIE 1582
S + +F+ +FY+ SRLHH+ST F ++V L+ + + F G E
Sbjct: 325 TALSPAKLASLQLPKTADPNFISDFYSHSRLHHISTWKCEFTEFVRGLQTQSNKGFPGRE 384
Query: 1583 AIRKWKTSLGITEDEDLEETFSDNPSPS---EPEPVIMHIDMDCFFVSVGIRHHPELQDE 1639
K+ T E N PS + + I+H+DMDCFFVSV IR+ P+L+ +
Sbjct: 385 KCAKYNT---FQELRSFYCIXLGNMPPSTLPKCQNCIIHVDMDCFFVSVAIRNRPDLKGK 441
Query: 1640 PVAVAHGKG-NSSKVREGVDRQAEFDIYRQRTM 1671
PVAV +G ++ REG + Q EF Y+ R +
Sbjct: 442 PVAVTSNRGAGTTTTREGANPQLEFQYYQNRIL 474
Score = 53.5 bits (127), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+LREW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1153 LAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1212
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKIV 1899
+ +VW A+ +L VQ ++ S K+V
Sbjct: 1213 QSVESVWNMAFDFILDNVQVVLQQMYGSTLKVV 1245
>gi|148223764|ref|NP_001084913.1| REV1, polymerase (DNA directed) [Xenopus laevis]
gi|47123073|gb|AAH70743.1| MGC83743 protein [Xenopus laevis]
Length = 1230
Score = 240 bits (612), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 119/247 (48%), Positives = 169/247 (68%), Gaps = 4/247 (1%)
Query: 1875 EAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIA 1934
+AY+E V M +S + + AVSCDE D + +L E LTP + ++ +R I
Sbjct: 532 DAYKE----VAMNMYKILASYTHDIEAVSCDEALADITGILTETRLTPDEASNAIRTEIK 587
Query: 1935 KETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFK 1994
++TGC S G GSN L AR+AT++AKP+GQ+HL P+ + DF+ +++LPGVG ++ K
Sbjct: 588 EKTGCAASIGIGSNILLARMATRRAKPDGQYHLKPEEVDDFIRGQLVNNLPGVGRTMDCK 647
Query: 1995 LNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYG 2054
L+SLG +TCG+LQNI++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYG
Sbjct: 648 LSSLGVKTCGELQNITMAKLQKEFGPKTGQMLYRFCRGLDDRPIRKEKERKSVSAEINYG 707
Query: 2055 IRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDY 2114
IRF E E FL L+ E+++RLE V MKGK +TLK+MVR A AP E++K+ GHG+CD
Sbjct: 708 IRFTQTSEAEVFLMNLSEEIQRRLEVVGMKGKKLTLKIMVRKAGAPIESAKYGGHGICDN 767
Query: 2115 ITKSSSL 2121
I ++ +L
Sbjct: 768 IARTVTL 774
Score = 136 bits (343), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 120/229 (52%), Gaps = 51/229 (22%)
Query: 1539 SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDED 1598
++ +F+ +FY+ SRLHH+ST F ++V L+ + + F G E ++K K
Sbjct: 343 ADPNFISDFYSHSRLHHISTWKCEFTEFVRNLQTQSNRGFPGRERLKKLKPG-------- 394
Query: 1599 LEETFSDNPSPS---EPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKV-R 1654
N PS + + I+H+DMDCFFVSV IR+H +L+ +PVAV +G + + R
Sbjct: 395 -------NLPPSAFPKCQNCIIHVDMDCFFVSVAIRNHADLKGKPVAVTSNRGAGTTITR 447
Query: 1655 EGVDRQAEFDIYRQRTM---------------NRMGLN-----------------TREYG 1682
EG + Q EF Y+ R + + GL+ R+ G
Sbjct: 448 EGSNPQLEFQYYQNRILKGKAGQPMSATSDSAQQNGLDQDISHLSMAEIASCSYEARQAG 507
Query: 1683 LGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
+ NGMF G A + CP L+ VPYDF+ YKEV+ +Y ++AS T +IEAVS
Sbjct: 508 VKNGMFFGRAKQLCPELQAVPYDFDAYKEVAMNMYKILASYTHDIEAVS 556
Score = 119 bits (297), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 86/129 (66%), Gaps = 18/129 (13%)
Query: 1319 GGYMEAKKRKLEEQFELEA-----NSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAE 1373
GGY+ AK +KL+EQF +A + IF GV+I+VNGYT P+A+
Sbjct: 20 GGYIAAKVQKLDEQFRTDAPLQQQKDGTSSKIFNGVSIYVNGYTD-----------PTAD 68
Query: 1374 ELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL 1432
+L+ LMMLHGG YH +Y S+TTHIIA+NLP+ K+ +LK +K+++PEWI +SI AG+LL
Sbjct: 69 QLRHLMMLHGGQYHVYYSRSKTTHIIATNLPNNKVNELK-DEKVVRPEWITESIKAGRLL 127
Query: 1433 DHKKYLLYT 1441
+ + LYT
Sbjct: 128 SYVPFQLYT 136
Score = 51.2 bits (121), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ + +++T+LREW+ S P DI Y ++L++E+ L + +++++++R +
Sbjct: 1138 LAGAIEFSDVKTLLREWITTISDPMEEDILQVVRYCTDLIDEKDLEKLDLVIKYMKRLMQ 1197
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKIV 1899
+ +VW A+ +L +Q ++ S K+V
Sbjct: 1198 QSVESVWNMAFDFILDNIQVVLQQTYGSTLKVV 1230
>gi|427788667|gb|JAA59785.1| Putative translesion dna polymerase [Rhipicephalus pulchellus]
Length = 904
Score = 238 bits (608), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 158/424 (37%), Positives = 225/424 (53%), Gaps = 52/424 (12%)
Query: 1322 MEAKKRKLEEQF------ELEANS-DSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEE 1374
M AK +KLE QF E++++ D IF+G+++FVNGYT P+AEE
Sbjct: 1 MNAKIQKLENQFLNSAQNEIDSSQEDQSSTIFKGISVFVNGYTN-----------PTAEE 49
Query: 1375 LKALMMLHGGIYHHYESSR-TTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLD 1433
++ +MMLHGG Y HY + ++IA+NLP K+ LK D ++KP WI DS+ AG+LL
Sbjct: 50 IRRIMMLHGGTYQHYYKRKPNCYMIATNLPPAKLLDLK--DYVVKPNWISDSVQAGRLLP 107
Query: 1434 HKKYLLYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSE- 1492
+ YLLYT L QK E P S + +S+ + DS ++E S E
Sbjct: 108 VQDYLLYT----PDLKNGQQKLSVVRCEKPSTSAAPSPSSTSQNNDQDSWLSSENSHDED 163
Query: 1493 ---AVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYN 1549
++E S N I +T +ESK +TV + A + FL +FY
Sbjct: 164 EHAGCHTENSVRHTENSIHHTETSVDQESKKDTVE----------PRKAGDPGFLEQFYG 213
Query: 1550 KSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSP 1609
+SRLHH+ST + YV + R G F GIE ++++ S E + E
Sbjct: 214 RSRLHHISTASIKLRDYVAQKRAVSSGAFEGIEKLKQYLASKSSREQVPIGE-------- 265
Query: 1610 SEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVRE-GVDRQAE-FDIYR 1667
E VIMHIDMDCFFVSVG+R P L+ +PVAV HGK + + + ++ Q E D+
Sbjct: 266 ---EKVIMHIDMDCFFVSVGLRTRPHLKGKPVAVCHGKTSLASISSVSLNSQTERSDLTS 322
Query: 1668 QRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNI 1727
+ R+ G+ + M++G A K CP L +PYDFE Y EVS LY+++AS TL+I
Sbjct: 323 CSEVASCSYEARKAGVKSRMYLGQARKLCPGLVAIPYDFESYDEVSRILYDVVASFTLDI 382
Query: 1728 EAVS 1731
EA+S
Sbjct: 383 EAIS 386
Score = 214 bits (545), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 129/356 (36%), Positives = 190/356 (53%), Gaps = 50/356 (14%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ A+SCDEM+ D + +LQ+ S +P +FA +LR+ I ++T CT S G G N L AR+A +
Sbjct: 382 IEAISCDEMFADVTNVLQQASCSPNEFAEFLRKKIEEKTLCTASVGLGPNMLVARVANRF 441
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKPNG + + F + + DLPGVG+ L +L+ +G +TC LQ + L+ L+ +
Sbjct: 442 AKPNGHHFVDSSNLPAFFETVNVKDLPGVGYRLQTQLSEMGVETCKQLQALPLETLKAKF 501
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
G K LY + RG D++ L F+ RKSVSAEVNYGIRF+ +M F+ QL+ EVE+RL
Sbjct: 502 GVKTSSLLYNYARGIDNRSLQFDKLRKSVSAEVNYGIRFKEPTDMIKFIGQLSTEVERRL 561
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVR 2138
E ++G+ ITLK+ VR +AP SK++GHG+CD + KSS L L T
Sbjct: 562 LEAGVQGRTITLKVKVRQKDAPVNPSKYMGHGLCDNLAKSSHL------LAAT------- 608
Query: 2139 SAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQ 2198
ASK + I KE + ++ + ++RG+GIQ
Sbjct: 609 -------ASKAI-----------------------ISKECYSLAMQMHLVASDIRGVGIQ 638
Query: 2199 VSKLE----HQSKTLATIDTFFTNKGKPPDQ--LNNPRPGPSNSTITPGPSNSTLP 2248
V +LE Q + T+ F T +PP+ + P G +N P +LP
Sbjct: 639 VGRLEPLPSGQGGGVKTMLDFLTT-SRPPESHGVAGPSSGATNGMTESLPKAVSLP 693
Score = 46.2 bits (108), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 1803 TTSHILSSNVSLQEMRTMLREWMCESQPEP--SDIEMFSEYLSNLVEERHLNPIVILLRF 1860
T ++ S +++++ +L++W+ + SD+ ++ L ++V ER+L + +LL+F
Sbjct: 804 TFESVIDSEKKMEQVKALLQQWINTTSDSVLNSDVVAWTNVLCSIVHERNLEMLDVLLKF 863
Query: 1861 LRRHVGKKESTVWAEAYQEMLSCVQ 1885
R V K + +W + Y ++++ VQ
Sbjct: 864 FHRTVQKNGAQLWQDTYMKVVNTVQ 888
>gi|349605599|gb|AEQ00788.1| DNA repair protein REV1-like protein, partial [Equus caballus]
Length = 321
Score = 238 bits (608), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 185/310 (59%), Gaps = 43/310 (13%)
Query: 1893 SSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQA 1952
+S + + AVSCDE VD +++L E LTP +FA+ +R I +T C S G GSN L A
Sbjct: 7 ASYTHHIEAVSCDEALVDITEILAETRLTPDEFANAVRMEIKDQTKCAASVGIGSNILLA 66
Query: 1953 RLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLK 2012
R+AT+KAKP+GQ+HL P+ + DF+ +++LPGVG S+ KL SLG +TCGDLQ +++
Sbjct: 67 RMATRKAKPDGQYHLKPEDVDDFIRGQLVTNLPGVGRSMESKLTSLGIKTCGDLQYMTMA 126
Query: 2013 RLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAG 2072
+LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGIRF +E E FL L+
Sbjct: 127 KLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGIRFTQPKEAEAFLLNLSE 186
Query: 2073 EVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITY 2132
E+++RLE +KGK +TLK++VR AP E++KF GHG+CD T++ +L
Sbjct: 187 EIQRRLEAAGVKGKRLTLKILVRKPGAPVESAKFGGHGICDNFTRTITL----------- 235
Query: 2133 FLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVEL 2192
D T S+ + I K L + + +K++ ++
Sbjct: 236 -----------------------DQATDSAKI---------IGKATLNMFHTMKLNIADM 263
Query: 2193 RGIGIQVSKL 2202
RG+GI V++L
Sbjct: 264 RGVGIHVNQL 273
>gi|6682365|gb|AAF23323.1|AF179302_1 REV1 protein [Mus musculus]
Length = 1249
Score = 238 bits (606), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 132/331 (39%), Positives = 189/331 (57%), Gaps = 43/331 (12%)
Query: 1884 VQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCST 1943
V AM +S + + AVSCDE +D + +L E L+P +FA+ LR I +T C S
Sbjct: 547 VAQAMYETWASYTHSIEAVSCDEALIDVTDILAETKLSPEEFAAALRIEIKDKTKCAASV 606
Query: 1944 GFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTC 2003
G GSN L AR+ATKKAKP+GQ+HL P + D + +++LPGVG S+ KL S G +TC
Sbjct: 607 GIGSNILLARMATKKAKPDGQYHLQPDEVDDSIRGQLVTNLPGVGRSMESKLASSGIKTC 666
Query: 2004 GDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEM 2063
GDLQ +++ +LQ E G + G LY+ CRG DD+ + E +RKSVSAE+NYGIRF +E
Sbjct: 667 GDLQCLTMAKLQKEFGPRTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGIRFTQPKEA 726
Query: 2064 ETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPI 2123
E FL L+ E+++RLE MKGK +TLK+MVR AP E +KF GHG+CD I ++ +L
Sbjct: 727 EAFLLSLSEEIQRRLEAAGMKGKRLTLKIMVRKPGAPIETAKFGGHGICDNIARTVTL-- 784
Query: 2124 YERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVN 2183
D T S+ + I K L + +
Sbjct: 785 --------------------------------DQATDSAKI---------IGKATLNMFH 803
Query: 2184 KLKVDPVELRGIGIQVSKLEHQSKTLATIDT 2214
+K++ ++RG+GIQV++L + L+T +
Sbjct: 804 TMKLNISDMRGVGIQVNQLVPANSNLSTCSS 834
Score = 147 bits (370), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 132/257 (51%), Gaps = 42/257 (16%)
Query: 1512 TVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELR 1571
TV+ S T ++ K S S+ +F+ +FY++SRLHH+ST ++VN L+
Sbjct: 315 TVQGPSSTKSTSVLTLSKVAPSVPSKPSDCNFISDFYSRSRLHHISTWKCELTEFVNTLQ 374
Query: 1572 EKHDGVFRGIEAIRKWKT---SLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSV 1628
+ G+F G E ++K KT SL +T+ T S SP + +MH+DMDCFFVSV
Sbjct: 375 RQSSGIFPGREKLKKVKTGRSSLVVTD----TGTMSVLSSPRH-QSCVMHVDMDCFFVSV 429
Query: 1629 GIRHHPELQDEPVAVAHGKG-NSSKVREGVDRQAEFDIYRQRTMNRMGLN---------- 1677
GIR+ P+L +PVAV +G ++ +R G + Q E+ Y+ R + +
Sbjct: 430 GIRNRPDLTGKPVAVTSNRGTGTAPLRPGANPQLEWQYYQNRALRGKAADIPDSSVWENQ 489
Query: 1678 -----------------------TREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSY 1714
R+ G+ NGMF G+A + CPNL+ VPYDF +EV+
Sbjct: 490 DSTQTNGIDSVLSKAEIASCSYEARQVGIKNGMFFGYAKQLCPNLQAVPYDFHACREVAQ 549
Query: 1715 CLYNLIASLTLNIEAVS 1731
+Y AS T +IEAVS
Sbjct: 550 AMYETWASYTHSIEAVS 566
Score = 140 bits (353), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 76/134 (56%), Positives = 92/134 (68%), Gaps = 16/134 (11%)
Query: 1316 KKKGGYMEAKKRKLEEQFELEANSDSRG---GIFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
+K GGYM AK +KLEEQF +A + G IF GVAI+VNGYT PSA
Sbjct: 16 EKWGGYMAAKVQKLEEQFRTDAANQKDGTASAIFSGVAIYVNGYTD-----------PSA 64
Query: 1373 EELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKL 1431
EEL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+L
Sbjct: 65 EELRNLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRL 123
Query: 1432 LDHKKYLLYTGTDA 1445
L Y LYT A
Sbjct: 124 LSSAPYQLYTKPSA 137
Score = 48.9 bits (115), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+L+EW+ S P DI Y ++L+EE+ L + +++++++R +
Sbjct: 1157 LAGAVEFSDVKTLLKEWITTISDPMEEDILQVVRYCTDLIEEKDLEKLDLVIKYMKRLMQ 1216
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKIV 1899
+ +VW A+ +L VQ ++ S K+
Sbjct: 1217 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKVT 1249
>gi|291386206|ref|XP_002709984.1| PREDICTED: REV1-like [Oryctolagus cuniculus]
Length = 1248
Score = 238 bits (606), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 119/247 (48%), Positives = 164/247 (66%), Gaps = 4/247 (1%)
Query: 1875 EAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIA 1934
+AY+E V M +S + + AVSCDE VD +++L E LTP +FA +R I
Sbjct: 541 DAYKE----VARTMYETLASYTHNIEAVSCDEALVDITEILAETKLTPEEFADAVRMEIK 596
Query: 1935 KETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFK 1994
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ + +LPGVG ++ K
Sbjct: 597 DQTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVINLPGVGRTMESK 656
Query: 1995 LNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYG 2054
L SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYG
Sbjct: 657 LASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYG 716
Query: 2055 IRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDY 2114
IRF +E E FL L+ E+++RLE +KGK +TLK+MVR AP E +KF GHG+CD
Sbjct: 717 IRFTQPKEAEAFLLSLSEEIQRRLESAGVKGKRLTLKIMVRKLGAPVETAKFGGHGICDN 776
Query: 2115 ITKSSSL 2121
I ++ +L
Sbjct: 777 IARTVTL 783
Score = 149 bits (376), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 139/251 (55%), Gaps = 46/251 (18%)
Query: 1518 SKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGV 1577
S + TV+ +AP S S+ +F+ +FY+ SRLHH++T ++VN L+ + G+
Sbjct: 324 SLVPTVSKAAP----SVPSKPSDCNFISDFYSHSRLHHIATWKCELTEFVNMLQRQSSGI 379
Query: 1578 FRGIEAIRKWKT---SLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHP 1634
F G E ++K K+ +L +T+ ++ S SP + IMH+DMDCFFVSVGIR+ P
Sbjct: 380 FPGREKLKKMKSGRSALVVTDTGNM----SVLSSPRH-QSCIMHVDMDCFFVSVGIRNRP 434
Query: 1635 ELQDEPVAVAHGKGNS-SKVREGVDRQAEFDIYR-------------------QRTMNRM 1674
+L+ +PVAV +G + +R G + Q E+ Y+ Q ++
Sbjct: 435 DLKGKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKLLKGKAADLPDSSMWETQDSVQTN 494
Query: 1675 GLNT--------------REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLI 1720
G+++ R+ G+ NGMF G+A + CPNL+ VPYDF+ YKEV+ +Y +
Sbjct: 495 GIDSVLSKAEIASCSYEARQVGIKNGMFFGYAKQLCPNLQAVPYDFDAYKEVARTMYETL 554
Query: 1721 ASLTLNIEAVS 1731
AS T NIEAVS
Sbjct: 555 ASYTHNIEAVS 565
Score = 134 bits (336), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 74/134 (55%), Positives = 90/134 (67%), Gaps = 16/134 (11%)
Query: 1316 KKKGGYMEAKKRKLEEQFELEANSDSRG---GIFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
+K GGYM AK +KLEEQF +A G IF GVAI+VNG+T PSA
Sbjct: 16 EKWGGYMAAKVQKLEEQFRSDAAMQKDGTSSSIFSGVAIYVNGFTD-----------PSA 64
Query: 1373 EELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKL 1431
EEL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+L
Sbjct: 65 EELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRL 123
Query: 1432 LDHKKYLLYTGTDA 1445
L Y LY A
Sbjct: 124 LSCIPYQLYNKQSA 137
Score = 47.0 bits (110), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++ +L+EW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1156 LAGAVEFSDVKNLLKEWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1215
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1216 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1247
>gi|348530896|ref|XP_003452946.1| PREDICTED: DNA repair protein REV1 [Oreochromis niloticus]
Length = 1330
Score = 238 bits (606), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 134/335 (40%), Positives = 195/335 (58%), Gaps = 48/335 (14%)
Query: 1875 EAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIA 1934
EAY+E V M +S + + A+SCDE+ +D S LL E+ +P A +R I
Sbjct: 651 EAYKE----VALNMYETLASYTHDIEALSCDEVLIDGSALLAEVGASPEDLAKAIRADIK 706
Query: 1935 KETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFK 1994
++TGC S G GSN L ARLAT+KAKP+GQ+ L + + DF+ ++P++ LPGVG + K
Sbjct: 707 EKTGCCASVGMGSNILLARLATRKAKPDGQYFLKSEEVDDFIRDLPVTSLPGVGPVMGRK 766
Query: 1995 LNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYG 2054
L +G ++CGDLQ +SL +LQ + G + G TL++ CRG DD+ + +E +RKSVSAE+NY
Sbjct: 767 LALMGVRSCGDLQQVSLSQLQKKFGPRTGQTLFRFCRGLDDRPVRYEKERKSVSAEMNYN 826
Query: 2055 IRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDY 2114
IRF E E FL L+ EV+KRL+E ++G+ +TLK+MVR AP E +K+ GHG+CD+
Sbjct: 827 IRFTRVDETECFLTNLSMEVQKRLQEAGLRGRRVTLKVMVRKIGAPLEPAKYGGHGICDH 886
Query: 2115 ITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQI 2174
+ K+ ++L +S T S L I
Sbjct: 887 LAKT---------------VMLAQS-------------------TDSGQL---------I 903
Query: 2175 LKEVLFIVNKLKVDPVELRGIGIQVSKLE-HQSKT 2208
V+ + + +KV+ +LRG+GIQV LE HQS T
Sbjct: 904 AAAVIKLFHAMKVEVQDLRGVGIQVQLLEGHQSAT 938
Score = 137 bits (344), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/189 (43%), Positives = 116/189 (61%), Gaps = 27/189 (14%)
Query: 1317 KKGGYMEAKKRKLEEQFELEANSD-----SRGGIFQGVAIFVNGYTKHCMMLDAYYIVPS 1371
+KGGYM AK KL+EQF L+A + + IF GVAI+VNGYT PS
Sbjct: 21 EKGGYMAAKVSKLDEQFRLDAPREKQKEGASSSIFTGVAIYVNGYTD-----------PS 69
Query: 1372 AEELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGK 1430
A+EL+ LMMLHGG +H +Y S+TTHIIA+NLP++KI++LK G+K+I+PEWI DSI AG
Sbjct: 70 ADELRRLMMLHGGQFHVYYSRSKTTHIIATNLPNSKIQELK-GEKVIRPEWITDSIKAGH 128
Query: 1431 LLDHKKYLLYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSH------TSTVSDSVD 1484
LL + +Y LY G PL + + + +E P S ++++++H + SV
Sbjct: 129 LLPYLQYQLY-GKHKGPLFPGM--TLRQTSEIPGPSHGVLQSNAHLKLNLPQCKIQSSVL 185
Query: 1485 NTEESKSEA 1493
N E+S A
Sbjct: 186 NHEKSSCSA 194
Score = 132 bits (333), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 122/263 (46%), Gaps = 60/263 (22%)
Query: 1543 FLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGV----FRGIEAIRKWKTSLGITEDED 1598
+ EFY+ SRLH +ST S F +YVNEL K G G E +RK G
Sbjct: 452 LISEFYSHSRLHQISTWRSGFSEYVNELHSKRKGAGGASLPGKERLRKSVAHWG------ 505
Query: 1599 LEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS-SKVREGV 1657
+ +P + I+H+DMDCFFVSVGIR+ P+L+ +PVAV +G VR G
Sbjct: 506 ---PWHCMHAPQLVKSCILHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGQGRGPVRPGA 562
Query: 1658 DRQAEFDIYRQR---------------------------------------TMNRMGLNT 1678
+ Q E + Y+++ +
Sbjct: 563 NPQLEMEYYQKKYTHPEAESAEDEIHTSPSQESPESRTNGVEQDAVALSMAEIASCSYEA 622
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS----LYT 1734
R+ G+ NGMF G A + CP L+ VPYDFE YKEV+ +Y +AS T +IEA+S L
Sbjct: 623 RQAGVRNGMFFGKAKQLCPALQSVPYDFEAYKEVALNMYETLASYTHDIEALSCDEVLID 682
Query: 1735 NESFL---NALPEDIRQEVLDDL 1754
+ L A PED+ + + D+
Sbjct: 683 GSALLAEVGASPEDLAKAIRADI 705
Score = 48.1 bits (113), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ L +++T+LREW+ ++P DI +Y ++L+E++ L + + +++++R +
Sbjct: 1238 LAGACDLTDIKTLLREWVTTITEPMEEDILQVVKYCTDLIEDKDLEKLDLTIKYMKRLMQ 1297
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKIV 1899
+ +VW+ A+ +L VQ ++ S KI
Sbjct: 1298 QSVESVWSMAFDFILDNVQVVLQQTYGSTLKIA 1330
>gi|432931258|ref|XP_004081628.1| PREDICTED: DNA repair protein REV1-like [Oryzias latipes]
Length = 1376
Score = 238 bits (606), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 131/329 (39%), Positives = 193/329 (58%), Gaps = 47/329 (14%)
Query: 1875 EAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIA 1934
EAY+E V M +S ++ + A+SCDE +D S LL EL ++P A +R I
Sbjct: 708 EAYKE----VAINMYEILASYTRDIEALSCDEALIDGSALLAELGISPDDLAQAIRADIK 763
Query: 1935 KETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFK 1994
++TGC+ S G GSN L ARLAT+KAKPNGQ+ L + + DF+ ++P++ LPGVGH + K
Sbjct: 764 EKTGCSASVGMGSNILLARLATRKAKPNGQYFLKSEEVDDFIRDLPVTRLPGVGHVMGKK 823
Query: 1995 LNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYG 2054
L +LG TCGDLQ +SL +LQ G + G TL++ CRG DD+ + E +RKSVSAE+NY
Sbjct: 824 LATLGVTTCGDLQQVSLSQLQRMFGPRTGQTLFRFCRGLDDRPVRCEKERKSVSAEMNYN 883
Query: 2055 IRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDY 2114
IRF +E E+FL L+ EV+KRL E ++G+ +TLK+MVR AP E++K+ GHG+CD
Sbjct: 884 IRFTKVEEAESFLSNLSMEVQKRLREAGLRGRRVTLKVMVRKVGAPLESAKYGGHGICDN 943
Query: 2115 ITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQI 2174
+ ++ L P ++ + + AS +
Sbjct: 944 LARTVML-------------------TQPTDSGQLI--------------------ASAV 964
Query: 2175 LKEVLFIVNKLKVDPVELRGIGIQVSKLE 2203
+K +++ +++ +LRGIGIQV LE
Sbjct: 965 IK----LLHAMQLQVQDLRGIGIQVQLLE 989
Score = 137 bits (346), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 72/131 (54%), Positives = 92/131 (70%), Gaps = 18/131 (13%)
Query: 1317 KKGGYMEAKKRKLEEQFELEANSDSR-----GGIFQGVAIFVNGYTKHCMMLDAYYIVPS 1371
++GGYM AK KL+EQF L+A + + GIF+GVAI+VNGYT+ PS
Sbjct: 64 ERGGYMAAKVSKLDEQFRLDAPREKQKEGACSGIFRGVAIYVNGYTE-----------PS 112
Query: 1372 AEELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGK 1430
A+EL+ LMMLHGG +H +Y S+TTHIIA+NLP+ KI+ LK G+K+I+PEWI DSI AG
Sbjct: 113 ADELRRLMMLHGGQFHVYYSRSKTTHIIANNLPNCKIQDLK-GEKVIRPEWITDSIKAGH 171
Query: 1431 LLDHKKYLLYT 1441
LL H KY LY
Sbjct: 172 LLPHLKYQLYA 182
Score = 136 bits (342), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 144/303 (47%), Gaps = 60/303 (19%)
Query: 1495 NSEESKSEAANP-IESKQTVKTKESKLETVNI-SAPKPQASSTKNASNEDFLGEFYNKSR 1552
N + + NP + S VKTK +N+ S P ++S + EFY+ SR
Sbjct: 477 NGSHHNAFSCNPALSSPAGVKTK------LNLHSDPSSKSSVQLLEQTGSLISEFYSHSR 530
Query: 1553 LHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPS---- 1608
LH +ST F +Y+NEL K +K S+ + L + + PS
Sbjct: 531 LHQISTWRIGFSEYINELHHK-----------KKESGSISYPGKDRLRKAAAQRPSDSRG 579
Query: 1609 ---PSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSS-KVREGVDRQAEFD 1664
P + I H+DMDCFFVSVGIRH P+L+ +PVAV +G+ R G + Q E
Sbjct: 580 SSAPVSVKSCIFHVDMDCFFVSVGIRHRPDLKGKPVAVTSNRGHGRVPTRPGANPQVEQQ 639
Query: 1665 IYRQRTMNRM---------GLN-----------------TREYGLGNGMFVGHALKKCPN 1698
Y+++ + G+N R+ G+ NGMF G A + CP+
Sbjct: 640 YYQRKHAHPQPDSPDSYANGVNLDSAALSMAEIASCSYEARQAGVRNGMFFGKAKQLCPS 699
Query: 1699 LKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS----LYTNESFLNAL---PEDIRQEVL 1751
L+ VPYDFE YKEV+ +Y ++AS T +IEA+S L + L L P+D+ Q +
Sbjct: 700 LQSVPYDFEAYKEVAINMYEILASYTRDIEALSCDEALIDGSALLAELGISPDDLAQAIR 759
Query: 1752 DDL 1754
D+
Sbjct: 760 ADI 762
Score = 51.6 bits (122), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 81/161 (50%), Gaps = 9/161 (5%)
Query: 1747 RQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTP----SPSPI-LDMSTSILD 1801
R+ + L + S + R+Q T P+ S + P +PS LD++ ++
Sbjct: 1217 RKNAVSPLKKGTSPMKRQQ-TNSPVKPIAAAGKSREPINIPKNENNPSTSNLDLAEPAVE 1275
Query: 1802 TTTSHI--LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILL 1858
+S + L+ L ++RT+LREW+ ++P DI +Y + L+E++ L + +++
Sbjct: 1276 AVSSPVPMLAGAFDLTDIRTLLREWVTTITEPMEEDILQVVKYCTELIEDKDLEKLDLII 1335
Query: 1859 RFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIV 1899
++++R + + +VW+ A+ +L VQ ++ S KI
Sbjct: 1336 KYMKRLMQQSVESVWSMAFDFILDNVQVILQQAYGSILKIT 1376
>gi|390356158|ref|XP_796696.3| PREDICTED: DNA repair protein REV1-like [Strongylocentrotus
purpuratus]
Length = 1057
Score = 237 bits (604), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 135/334 (40%), Positives = 182/334 (54%), Gaps = 46/334 (13%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEM+VD S +L++ + +FA LR+ I +T C S G SN L AR+AT+
Sbjct: 487 IEAVSCDEMFVDISGILRDTKASAEEFAQTLRKEIKDQTQCNASAGITSNILLARMATRV 546
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKPNGQF + P F+ P+ DLPGVG S K+ +L +TC DLQ +SL +Q E
Sbjct: 547 AKPNGQFIVEPHAADAFIRTQPVKDLPGVGRSTTRKMETLDIKTCADLQQLSLGAVQKEF 606
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
G K G LY CRG DD+ + E +RKSVSAEVNYGIRF+ + E F+ +LA EV KRL
Sbjct: 607 GQKTGQLLYGFCRGLDDRPIRQEQERKSVSAEVNYGIRFKQESDSEKFITELAAEVHKRL 666
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVR 2138
+KM + IT+KL VR +AP+E SKF+GHG+C+ +S +
Sbjct: 667 TAIKMLARTITIKLKVRHPDAPKETSKFMGHGICEDKARSCT------------------ 708
Query: 2139 SAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQ 2198
LG D I KE ++ +L+V V++RG+GIQ
Sbjct: 709 -----------LGQATEDVQV--------------IQKESKNLLKELQVPAVDMRGVGIQ 743
Query: 2199 VSKLEH--QSKTLATID-TFFTNKGKPPDQLNNP 2229
+SKL Q+ TL + T F K KP D +P
Sbjct: 744 LSKLSSSAQAGTLPSKSITAFMTKPKPADIAPDP 777
Score = 236 bits (603), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 177/510 (34%), Positives = 243/510 (47%), Gaps = 120/510 (23%)
Query: 1319 GGYMEAKKRKLEEQFELEA-----NSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAE 1373
GGYM K RKLEEQF +A S + IF GV I VNGYT PS++
Sbjct: 21 GGYMSEKVRKLEEQFRGDAPTNKEKSGTSTDIFHGVTIHVNGYTD-----------PSSD 69
Query: 1374 ELKALMMLHGGIYHHYES-SRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL 1432
ELK LM +HGG+Y HY S SR THIIA+NLP+ K+++LK +KI+KP+WI +SI AG+LL
Sbjct: 70 ELKRLMTIHGGMYQHYYSVSRVTHIIATNLPYAKLRQLK-TEKIVKPDWITNSIEAGRLL 128
Query: 1433 DHKKYLLYTGTDAKPLTKLLQKSYFENT--EAPCCSKSLVETSSHTSTVSDSVDNTEESK 1490
Y LYT ++ +LQ S +AP + + + SD V +E
Sbjct: 129 PSLPYELYTDRSSRQNQAVLQFSKGPQVKPDAPSIPAPIPKAAPEKGG-SDDVSQEQEDD 187
Query: 1491 SEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNK 1550
+ S+ KS AA N+ ++ A + +FL EFY+
Sbjct: 188 EGSTLSKADKSLAAV----------------DANVQGRANRSFGIATAGDSNFLSEFYSN 231
Query: 1551 SRLHHLSTMGSMFKQYVNELREKHDGVFRGIE---AIRKW--------KTSLGITEDEDL 1599
SRLH++ST G+ K YVN L+ D F G + AI K K LG+ ED
Sbjct: 232 SRLHYISTWGAECKAYVNALQSNGDTTFPGRQRLLAIMKEGKSQRQAKKCELGVVGTEDD 291
Query: 1600 EETFSDN----PSPSEPEPV--------------IMHIDMDCFFVSVGIRHHPELQDEPV 1641
+ +S++ P SE IMHIDMDCFFVSVG+ P+L D+PV
Sbjct: 292 DRDWSEDAMIDPKESEHRATGSSKTTKGKEKMRRIMHIDMDCFFVSVGLIKRPDLVDKPV 351
Query: 1642 AVAH--GKGNSSKVREGVDRQAEFDIYRQR------------------------------ 1669
AV H G+ S+ R+ + Q E + Y ++
Sbjct: 352 AVTHSKGQSGMSEHRQEIS-QFEREYYEKKYGSEAARQNHKEDQSNSSSDAKVTGTGTAG 410
Query: 1670 -------------TMNRMG------LNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYK 1710
T + M R+ G+ NGMF+G A CP L+ +PYDF+GYK
Sbjct: 411 GASSSSSSGKPKETFHSMAEIASCNYVARKAGVKNGMFMGRAKSLCPELQTIPYDFDGYK 470
Query: 1711 EVSYCLYNLIASLTLNIEAVSLYTNESFLN 1740
VS LY+++AS T +IEAVS +E F++
Sbjct: 471 RVSQKLYDIVASYTHDIEAVSC--DEMFVD 498
Score = 43.5 bits (101), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 1191 NASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQLIS 1226
A + +FL EFY+ SRLH++ST G+ K YVN L S
Sbjct: 218 TAGDSNFLSEFYSNSRLHYISTWGAECKAYVNALQS 253
>gi|387015600|gb|AFJ49919.1| DNA repair protein REV1-like [Crotalus adamanteus]
Length = 1241
Score = 235 bits (599), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 187/327 (57%), Gaps = 47/327 (14%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E V M +S + + AVSCDE VD +++L E LT + A+ +R I
Sbjct: 542 AYKE----VAQTMYETLASYTHNIEAVSCDEALVDTTEILAETGLTSEELANVIRAEIKN 597
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L ARLAT++AKP+GQ+HL P+ + DF+ + + LPGVG ++ KL
Sbjct: 598 KTKCPASIGIGSNILLARLATRQAKPDGQYHLKPEEVDDFIRSQLIIHLPGVGRTMESKL 657
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
+S+G +TCGDLQ I++ +LQ E G K G LY+ CRG DD+ + E RKSVSAE+NYGI
Sbjct: 658 SSMGLKTCGDLQCITMSKLQKEFGPKTGQMLYRFCRGLDDRPIQREKTRKSVSAEINYGI 717
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKG+ +TL++M+R A AP E +KF GHG+CD +
Sbjct: 718 RFSQAKEAEAFLLSLSEEIQRRLEAAGMKGRRLTLRVMIRKAGAPVEPAKFGGHGICDSV 777
Query: 2116 TKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL 2175
++ + L H A I
Sbjct: 778 ARTVT-----------------------------LNHAT--------------DNARVIG 794
Query: 2176 KEVLFIVNKLKVDPVELRGIGIQVSKL 2202
KE++ + + +K++ ++RG+GIQV +L
Sbjct: 795 KEIINMFHTMKLNISDMRGVGIQVHQL 821
Score = 152 bits (383), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 136/259 (52%), Gaps = 41/259 (15%)
Query: 1512 TVKTKESKLETVNISAP-KPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNEL 1570
TV+ S T ++ P K S +SN +F+ +FY+ SRLHH+ST F +++N L
Sbjct: 309 TVQGPSSTKNTTSVPDPNKEDYSPLCKSSNGNFISDFYSHSRLHHISTWKCEFTEFINTL 368
Query: 1571 REKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGI 1630
+++++ F G E ++K K DL+ TF N ++ + IMH+DMDCFFVSVGI
Sbjct: 369 QKQNNASFPGREKLKKNKAGQSTINKADLDSTFFLN--SAKHQCCIMHVDMDCFFVSVGI 426
Query: 1631 RHHPELQDEPVAVAHGKGNS-SKVREGVDRQAEFDIY-----RQRT-------------- 1670
R P+L+ +PVAV +G+ + +R G + Q E Y + RT
Sbjct: 427 RDKPDLKGKPVAVTSNRGSGKALLRPGANPQLERQYYLNKLLKGRTEIDDADSTDDDNQD 486
Query: 1671 ---MNRMGLN---------------TREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEV 1712
+N+ + R+ G+ NGMF G A + CPNL+ VPYDF YKEV
Sbjct: 487 SAELNKSDFDISVSSMAEIASCSYEARQAGIKNGMFFGQAKQLCPNLQAVPYDFHAYKEV 546
Query: 1713 SYCLYNLIASLTLNIEAVS 1731
+ +Y +AS T NIEAVS
Sbjct: 547 AQTMYETLASYTHNIEAVS 565
Score = 134 bits (337), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 71/131 (54%), Positives = 90/131 (68%), Gaps = 18/131 (13%)
Query: 1317 KKGGYMEAKKRKLEEQFELEA-----NSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPS 1371
K GGYM AK +KLE QF EA ++ IF GVAIFVNG+T PS
Sbjct: 18 KWGGYMSAKVQKLENQFHSEAALQHQKDENSSSIFSGVAIFVNGFTD-----------PS 66
Query: 1372 AEELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGK 1430
A+EL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+++P+WI+DSI AG+
Sbjct: 67 ADELRRLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVVRPDWIIDSIKAGQ 125
Query: 1431 LLDHKKYLLYT 1441
LL + Y LYT
Sbjct: 126 LLSYIPYQLYT 136
Score = 49.7 bits (117), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ + +++ +L+EW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1149 LAGAIEFNDVKALLKEWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1208
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKIV 1899
+ +VW A+ +L VQ ++ S KI+
Sbjct: 1209 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKII 1241
>gi|440789459|ref|YP_007349169.1| DNA topoisomerase II large subunit [Serratia phage phiMAM1]
gi|425702498|gb|AFX93658.1| DNA topoisomerase II large subunit [Serratia phage phiMAM1]
Length = 633
Score = 234 bits (598), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 191/655 (29%), Positives = 283/655 (43%), Gaps = 139/655 (21%)
Query: 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHME-RREITYVPGLYKIF 88
++V + Y++ ++HILLRP+ ++GS+ W+ + + + +++ Y P L K F
Sbjct: 4 INVGRKYKRLDHIQHILLRPERHLGSIRSAKLDTWVYDPLKDQVVLKKDFEYSPALVKQF 63
Query: 89 DEILVNACDNKQ--RDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFG 146
DEI+ N D+ + + I +T+ I V +NG GIPVV H D ++P M+F
Sbjct: 64 DEIITNCVDHSKTPEGKHLTDITVTITPMNGQIIVADNG-GIPVVRHPDNGEWIPEMLF- 121
Query: 147 HLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYG----AKLCNIFS 202
G L + SN+ND++ + G A L N+FS
Sbjct: 122 ------------------------GSLYSGSNFNDDDPEFNNKNGGGQNGEGASLVNVFS 157
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
F V T+ + KK+F Q + DNMS P I S S T I + PD + + LD++
Sbjct: 158 KWFRVVTN--DGKKTFSQTFTDNMSGREPPTISSISSRG-TSIAWMPDYKRLGLERLDQN 214
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNP 322
+ ++ RRA++ AA +KV LNG+ + + F +V + D NP
Sbjct: 215 NIMMLYRRAFEVAACNPKLKVVLNGKPIRIDRFGHFVDYFCSPATVDE----------NP 264
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
W V I PS F S+VNS+ T GG HVD V D IV I ++KK K
Sbjct: 265 EWMVGITPSSGTFAHYSYVNSVPTLVGGPHVDYVADQIVAAIRPGLEKKLK--------- 315
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
LKP +KNH+ ++I+ I NP FDSQTKE
Sbjct: 316 ----------------------------AELKPAMIKNHMCLYISATINNPRFDSQTKER 347
Query: 443 MTLQKGSFGSTCVP----------------KLE------------------DAND----- 463
MT FG+T P KLE D N
Sbjct: 348 MTTPVSQFGTTYKPSQRLINKAAAIVFDALKLELSALRNEAIEAELEKTIKDVNKLDTRE 407
Query: 464 ------AGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK-YGVFPLRGKLLNVREATHK 516
A ++ L+LTEGDSA + ++ R K G+FPLRGK +NV +
Sbjct: 408 IKKYYPATVRDRSQAVLVLTEGDSASTPVLAA-----RSKNVGLFPLRGKFINVLNNSRS 462
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
++ N E NL ILG+ +K ++ L Y + + TD D DG HI+GLII
Sbjct: 463 KLFANEEFKNLCAILGITPGQK----PNLDKLNYRFVCVSTDADDDGKHIRGLIILLFCT 518
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
WP + L TP ++ + F + +++E+ E + T K KY K
Sbjct: 519 YWPEFVEAGRLVILRTPYMRCWVGKAMHEFMTQADYDEFYAENHHKITKK-KYLK 572
>gi|297822377|ref|XP_002879071.1| hypothetical protein ARALYDRAFT_901604 [Arabidopsis lyrata subsp.
lyrata]
gi|297324910|gb|EFH55330.1| hypothetical protein ARALYDRAFT_901604 [Arabidopsis lyrata subsp.
lyrata]
Length = 538
Score = 233 bits (595), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 132/324 (40%), Positives = 195/324 (60%), Gaps = 37/324 (11%)
Query: 42 LEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQR 101
+EHILL PD+YIGS+E T+T+W+ +E M R +TYVPGLYKIFDEILVNA DNK+R
Sbjct: 30 VEHILLCPDSYIGSIEKHTQTLWVYEKE--EMVCRSVTYVPGLYKIFDEILVNAADNKRR 87
Query: 102 DPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKV 161
DP M+ +K+ ++ E N ISV N+G G+P+ +E ++VP + FG L
Sbjct: 88 DPSMDSVKVVIDVEKNQISVCNSGDGVPL----EEGVYVPGIFFGPWL------------ 131
Query: 162 TGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK-KSFKQ 220
S NY+ TGGRNG+GA L NIFS++F++E + + K +K+
Sbjct: 132 --------------SRNYDYNVKNTTGGRNGFGATLTNIFSTEFIIEIADGKRSLKKYKR 177
Query: 221 VWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAST- 278
V+++NM + I K +++TK+TF PDL KF MT L+ D+V L+++R +D A
Sbjct: 178 VFENNMGNKSKLFITKCNKSENWTKVTFKPDLKKFNMTELENDVVALMSKRVFDIAGCLG 237
Query: 279 KDVKVFLNGEKLPVKNFQDYVKLYTDRQDED-GDPVKIIYENVNPRWEVAIAPSDRGFQQ 337
+ VKV LN +++P+K+F DYV LY + +P+ + E VN RWEV ++ SD FQQ
Sbjct: 238 QTVKVELNEKRVPIKSFSDYVDLYLSAASKSRTEPLPRMNEKVNDRWEVCVSLSDGQFQQ 297
Query: 338 VSFVNSIATTKGGRHVDAVVDAIV 361
+ N + T H+ V+A++
Sbjct: 298 KKYPN-VKTDNVKNHLWVFVNALI 320
Score = 62.4 bits (150), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 32/42 (76%)
Query: 413 LKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC 454
+K VKNH+W+F+N LI NP FDSQTKE +TL + SFGS C
Sbjct: 303 VKTDNVKNHLWVFVNALIDNPAFDSQTKERLTLPESSFGSKC 344
>gi|183987590|gb|ACC65785.1| topoisomerase II [Pleurotus djamor]
Length = 735
Score = 233 bits (593), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/273 (43%), Positives = 158/273 (57%), Gaps = 46/273 (16%)
Query: 190 RNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFT 248
RNG+GAKL NI+S +F +ET+ +K + Q W NM++V +I K+G +++TK+TF
Sbjct: 1 RNGFGAKLANIYSHEFTIETADKTNEKKYSQTWTKNMTQVGKAKITKNGRGEEWTKVTFK 60
Query: 249 PDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDE 308
PDL +F MT +D D L+ +R YD A + KDVKV+LN E+L VKNF+ YV++Y D
Sbjct: 61 PDLARFGMTHIDPDTAGLLRKRVYDMAGTVKDVKVYLNDERLKVKNFKQYVEMYLDSAAA 120
Query: 309 DGD---------PVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDA 359
D IIYE ++PRWEV A SD FQQVSF NSI+T KGG HV+ + D
Sbjct: 121 DAKENSGGAAQAKASIIYEQISPRWEVGFATSDGTFQQVSFANSISTIKGGTHVNYISDQ 180
Query: 360 IVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVK 419
+ K +I + KKNK G A+KP Q+K
Sbjct: 181 LAKNLIAAITKKNK------------------------------------GAAVKPAQIK 204
Query: 420 NHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS 452
NH+WIF+N LI NPTFDSQTKE +TL FGS
Sbjct: 205 NHMWIFVNALIENPTFDSQTKETLTLPASKFGS 237
Score = 228 bits (582), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 111/192 (57%), Positives = 145/192 (75%), Gaps = 16/192 (8%)
Query: 453 TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVRE 512
T + KL DAN+AGTK++ CTLILTEGDSAKSLAV+GL VVGRD +GVFPLRGKLLNVRE
Sbjct: 313 TGMAKLSDANNAGTKHAEKCTLILTEGDSAKSLAVAGLAVVGRDNFGVFPLRGKLLNVRE 372
Query: 513 ATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIIN 572
A H Q+++N EI N+ KI+GLQ++K+Y+ V +LRYGRLMIMTDQD DGSHIKGL+IN
Sbjct: 373 ARHDQVMKNEEIQNIKKIMGLQHNKEYSNVS---SLRYGRLMIMTDQDHDGSHIKGLLIN 429
Query: 573 FIHHNWPTLLRLP-FLEEFITPIIK------------ATKAREELSFYSLPEFEEWKEET 619
F+ H +P+LL++P FL EF+TPI++ TK + +F+++PE+E+W E T
Sbjct: 430 FLDHFYPSLLKIPEFLVEFVTPIVRVSIFHQCQIPPHVTKGSQRKNFFTIPEYEQWIEST 489
Query: 620 TNWHTYKIKYYK 631
+ + KYYK
Sbjct: 490 PDSKKWTAKYYK 501
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/25 (80%), Positives = 25/25 (100%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGW 684
+EPEWY+PI+P+VLVNGA+GIGTGW
Sbjct: 711 VEPEWYMPILPLVLVNGADGIGTGW 735
>gi|427788657|gb|JAA59780.1| Putative translesion dna polymerase [Rhipicephalus pulchellus]
Length = 910
Score = 232 bits (592), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 158/430 (36%), Positives = 225/430 (52%), Gaps = 58/430 (13%)
Query: 1322 MEAKKRKLEEQF------ELEANS-DSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEE 1374
M AK +KLE QF E++++ D IF+G+++FVNGYT P+AEE
Sbjct: 1 MNAKIQKLENQFLNSAQNEIDSSQEDQSSTIFKGISVFVNGYTN-----------PTAEE 49
Query: 1375 LKALMMLHGGIYHHYESSR-TTHIIASNLPHTKIKKLKPGDKIIKPEWIVD------SIS 1427
++ +MMLHGG Y HY + ++IA+NLP K+ LK D ++KP WI D S+
Sbjct: 50 IRRIMMLHGGTYQHYYKRKPNCYMIATNLPPAKLLDLK--DYVVKPNWISDRLVRSVSVQ 107
Query: 1428 AGKLLDHKKYLLYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTE 1487
AG+LL + YLLYT L QK E P S + +S+ + DS ++E
Sbjct: 108 AGRLLPVQDYLLYT----PDLKNGQQKLSVVRCEKPSTSAAPSPSSTSQNNDQDSWLSSE 163
Query: 1488 ESKSE----AVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDF 1543
S E ++E S N I +T +ESK +TV + A + F
Sbjct: 164 NSHDEDEHAGCHTENSVRHTENSIHHTETSVDQESKKDTVE----------PRKAGDPGF 213
Query: 1544 LGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETF 1603
L +FY +SRLHH+ST + YV + R G F GIE ++++ S E + E
Sbjct: 214 LEQFYGRSRLHHISTASIKLRDYVAQKRAVSSGAFEGIEKLKQYLASKSSREQVPIGE-- 271
Query: 1604 SDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVRE-GVDRQAE 1662
E VIMHIDMDCFFVSVG+R P L+ +PVAV HGK + + + ++ Q E
Sbjct: 272 ---------EKVIMHIDMDCFFVSVGLRTRPHLKGKPVAVCHGKTSLASISSVSLNSQTE 322
Query: 1663 -FDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIA 1721
D+ + R+ G+ + M++G A K CP L +PYDFE Y EVS LY+++A
Sbjct: 323 RSDLTSCSEVASCSYEARKAGVKSRMYLGQARKLCPGLVAIPYDFESYDEVSRILYDVVA 382
Query: 1722 SLTLNIEAVS 1731
S TL+IEA+S
Sbjct: 383 SFTLDIEAIS 392
Score = 214 bits (545), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 129/356 (36%), Positives = 190/356 (53%), Gaps = 50/356 (14%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ A+SCDEM+ D + +LQ+ S +P +FA +LR+ I ++T CT S G G N L AR+A +
Sbjct: 388 IEAISCDEMFADVTNVLQQASCSPNEFAEFLRKKIEEKTLCTASVGLGPNMLVARVANRF 447
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKPNG + + F + + DLPGVG+ L +L+ +G +TC LQ + L+ L+ +
Sbjct: 448 AKPNGHHFVDSSNLPAFFETVNVKDLPGVGYRLQTQLSEMGVETCKQLQALPLETLKAKF 507
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
G K LY + RG D++ L F+ RKSVSAEVNYGIRF+ +M F+ QL+ EVE+RL
Sbjct: 508 GVKTSSLLYNYARGIDNRSLQFDKLRKSVSAEVNYGIRFKEPTDMIKFIGQLSTEVERRL 567
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVR 2138
E ++G+ ITLK+ VR +AP SK++GHG+CD + KSS L L T
Sbjct: 568 LEAGVQGRTITLKVKVRQKDAPVNPSKYMGHGLCDNLAKSSHL------LAAT------- 614
Query: 2139 SAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQ 2198
ASK + I KE + ++ + ++RG+GIQ
Sbjct: 615 -------ASKAI-----------------------ISKECYSLAMQMHLVASDIRGVGIQ 644
Query: 2199 VSKLE----HQSKTLATIDTFFTNKGKPPDQ--LNNPRPGPSNSTITPGPSNSTLP 2248
V +LE Q + T+ F T +PP+ + P G +N P +LP
Sbjct: 645 VGRLEPLPSGQGGGVKTMLDFLTT-SRPPESHGVAGPSSGATNGMTESLPKAVSLP 699
Score = 46.2 bits (108), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 1803 TTSHILSSNVSLQEMRTMLREWMCESQPEP--SDIEMFSEYLSNLVEERHLNPIVILLRF 1860
T ++ S +++++ +L++W+ + SD+ ++ L ++V ER+L + +LL+F
Sbjct: 810 TFESVIDSEKKMEQVKALLQQWINTTSDSVLNSDVVAWTNVLCSIVHERNLEMLDVLLKF 869
Query: 1861 LRRHVGKKESTVWAEAYQEMLSCVQ 1885
R V K + +W + Y ++++ VQ
Sbjct: 870 FHRTVQKNGAQLWQDTYMKVVNTVQ 894
>gi|410896724|ref|XP_003961849.1| PREDICTED: DNA repair protein REV1-like [Takifugu rubripes]
Length = 1354
Score = 232 bits (591), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 195/329 (59%), Gaps = 47/329 (14%)
Query: 1875 EAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIA 1934
EAY+E V M + + + A+SCDE+ +D S LL EL ++P + A +R I
Sbjct: 667 EAYKE----VALTMYETLAGYTHDIEALSCDELLIDSSALLAELCISPEELAKAIRADIK 722
Query: 1935 KETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFK 1994
++TGC S G GSN L ARLAT+KAKP+GQ L + + DF+ ++P++ LPGVG + K
Sbjct: 723 EKTGCCASVGMGSNILLARLATRKAKPDGQHFLRSEDVDDFIRDLPVTSLPGVGPVMSRK 782
Query: 1995 LNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYG 2054
L ++G ++CGDLQ +SL +LQ + G + G TL++ CRG DD+ + +E +RKSVSA++NY
Sbjct: 783 LVAMGVRSCGDLQQVSLSQLQKKFGPRTGQTLFRFCRGLDDRPVRYEKERKSVSADMNYN 842
Query: 2055 IRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDY 2114
IRF E E FL L+ EV+KRL+E ++G+ +TLK+MVR AP+E +K+ GHG+CD
Sbjct: 843 IRFTTVNEAECFLTNLSMEVQKRLQEAGLRGRRVTLKVMVRKVGAPQEPAKYGGHGICDN 902
Query: 2115 ITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQI 2174
+ ++ ++L +S + HG + I AS +
Sbjct: 903 LART---------------VMLAQSTD----------HG--EVI------------ASAV 923
Query: 2175 LKEVLFIVNKLKVDPVELRGIGIQVSKLE 2203
+K LF L+V +LRG+GIQV L+
Sbjct: 924 IK--LFHAMNLQVQ--DLRGVGIQVQLLD 948
Score = 132 bits (331), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 131/266 (49%), Gaps = 54/266 (20%)
Query: 1538 ASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNEL--REKHDGV--FRGIEAIRKWKTSLGI 1593
A + EFY++SRLH +ST + F +YVNEL R K G F G E +RK
Sbjct: 461 AQTSGLISEFYSRSRLHQISTWRNSFSEYVNELHSRRKAAGAPSFPGKERLRKRVAQ--- 517
Query: 1594 TEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKV 1653
+D + S + PS + I H+DMDCFFVSV IR+ P+L+ +PVAV +G + KV
Sbjct: 518 -QDGQGRKARSFSCVPSGVKSCIFHVDMDCFFVSVAIRNRPDLKGKPVAVTSNRG-AGKV 575
Query: 1654 --REGVDRQAEF--------------DIYRQRTMNRMGLNT------------------- 1678
R G + Q E D+YR + NT
Sbjct: 576 LHRPGANPQLERHYYQWKQSHTKSDEDLYRTPSQESPESNTSGAGQETAALSMAEIASCS 635
Query: 1679 ---REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS---- 1731
R+ G+ NGMF G A + CP+L+ VPYDFE YKEV+ +Y +A T +IEA+S
Sbjct: 636 YEARQAGVRNGMFFGKAKQLCPSLQAVPYDFEAYKEVALTMYETLAGYTHDIEALSCDEL 695
Query: 1732 LYTNESFLNAL---PEDIRQEVLDDL 1754
L + + L L PE++ + + D+
Sbjct: 696 LIDSSALLAELCISPEELAKAIRADI 721
Score = 130 bits (328), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 69/131 (52%), Positives = 90/131 (68%), Gaps = 18/131 (13%)
Query: 1317 KKGGYMEAKKRKLEEQFELEANSD-----SRGGIFQGVAIFVNGYTKHCMMLDAYYIVPS 1371
++GGYM AK KL EQF+LEA + S IF GV+I+VNGYT+ PS
Sbjct: 21 ERGGYMAAKVSKLHEQFKLEAPKEKQKEGSSSNIFCGVSIYVNGYTE-----------PS 69
Query: 1372 AEELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGK 1430
A+EL+ LMMLHGG +H +Y ++TTHIIA+NLP+ KI++LK G K+IKPEWI DS+ AG
Sbjct: 70 ADELRRLMMLHGGQFHVYYSRTKTTHIIANNLPNNKIQELK-GRKVIKPEWITDSVKAGH 128
Query: 1431 LLDHKKYLLYT 1441
LL + +Y LY
Sbjct: 129 LLPYLQYQLYA 139
Score = 49.7 bits (117), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ L +++T+LREW+ ++P DI +Y ++L+E++ L + +++++++R +
Sbjct: 1262 LAGACDLTDIKTLLREWVTTITEPMEEDILQVVKYCTDLIEDKDLEKLDLIIKYMKRLMK 1321
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW+ A+ +L VQ ++ S KI
Sbjct: 1322 QSVESVWSMAFDFVLDNVQVVLQQTYGSTLKI 1353
>gi|443705866|gb|ELU02195.1| hypothetical protein CAPTEDRAFT_166412 [Capitella teleta]
Length = 847
Score = 231 bits (590), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 149/385 (38%), Positives = 205/385 (53%), Gaps = 59/385 (15%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDE+ VD + L+ E+ ++PL+ AS +R I + + CT S G G N L A++ATK+
Sbjct: 344 IEAVSCDELLVDLTSLVNEVQMSPLRIASMMRSEIEQRSKCTASAGIGPNILLAKMATKR 403
Query: 1959 AKPNGQFHLTPQIIS--DFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQN 2016
AKPNGQ H P + + + + + P+ DLPGVG S+ K+ +L TCGDLQ ++L LQ
Sbjct: 404 AKPNGQ-HCIPDLTAGQELLSDRPVKDLPGVGRSIATKMAALSIVTCGDLQKMALNILQE 462
Query: 2017 EVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEK 2076
G K G + +G+D++ +T QRKSVSAEVNYGIRF+ E+ F+ QL+ EV
Sbjct: 463 HFGPKIGKQVKDFAQGKDERSITSNKQRKSVSAEVNYGIRFKQEGEVLNFVHQLSDEVHS 522
Query: 2077 RLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLL 2136
RL EVKMKGK ITLKL VRS AP E +KFLGHG+CD + KS SLP
Sbjct: 523 RLREVKMKGKTITLKLKVRSKGAPVETAKFLGHGICDSVNKSVSLP-------------- 568
Query: 2137 VRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIG 2196
+ + I +E + +V ++ +LRGIG
Sbjct: 569 -----------------------------LATNNPEVIRREAMALVRQMNFPADDLRGIG 599
Query: 2197 IQVSKLEHQSKTLA------TIDTFFTNKGKP----PDQLNNPRPGPSNSTITPGPSNST 2246
IQVS+LE S+ +A +I F + + P P++ + P S T
Sbjct: 600 IQVSRLE--SEIIADGGITRSILQFTSIRQNPSTEHPEEKPDSPPTSSLPPPTSSLPPLP 657
Query: 2247 LPPGPSNSTLP-PGPSNSTLLPGPS 2270
P NS+LP P PS LP PS
Sbjct: 658 FLPSQMNSSLPSPMPSVPIDLPSPS 682
Score = 130 bits (328), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 88/233 (37%), Positives = 116/233 (49%), Gaps = 35/233 (15%)
Query: 1515 TKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKH 1574
K S + N SA P +T A N FL EFYN SRLHH+S+ GS K YV +L+ +
Sbjct: 135 VKHSVEASANQSAAPP---NTATAGNPKFLKEFYNNSRLHHISSWGSECKTYVRQLQAAN 191
Query: 1575 DGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHP 1634
F G E + LE D+ IMH+DMDCFFVSVG+ P
Sbjct: 192 S--FPGREKL--------------LEMERRDDDDHGAMTQCIMHVDMDCFFVSVGLIKRP 235
Query: 1635 ELQDEPVAVAHGKGNSSK-VREGVDRQAEFDIYRQRTMNRMG----LNT----------- 1678
L+ +PVAV H KG + R + E ++++ +G LN+
Sbjct: 236 HLRGKPVAVTHSKGKGREDARSEENVAYEMAHWQKKHGGNLGSKPALNSMAEIASCSYEA 295
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
R G+ NGMF G A C +L +PYD++ YK VS LY+ IAS T +IEAVS
Sbjct: 296 RAAGVKNGMFFGQARDLCADLVPIPYDYDEYKRVSRILYDTIASFTHDIEAVS 348
Score = 109 bits (272), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 81/125 (64%), Gaps = 14/125 (11%)
Query: 1318 KGGYMEAKKRKLEEQF-ELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELK 1376
+GGYM AKK+KL+ QF E E+ + GG+F G+AI VNGYTK P++EELK
Sbjct: 13 QGGYMNAKKKKLKTQFSEHESTESTEGGLFTGIAIHVNGYTK-----------PTSEELK 61
Query: 1377 ALMMLHGGIY-HHYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHK 1435
LM HGG + +Y + THIIA++L +KI +L KI+KPEWI +SI A LL ++
Sbjct: 62 RLMQQHGGKFIQYYNKTDVTHIIATSLTTSKINRLT-NQKIVKPEWITESIDANCLLPYQ 120
Query: 1436 KYLLY 1440
Y+L+
Sbjct: 121 DYVLF 125
Score = 49.7 bits (117), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 1168 TVQVELREGVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
+V+ + N SA P +T A N FL EFYN SRLHH+S+ GS K YV QL
Sbjct: 134 SVKHSVEASANQSAAPP---NTATAGNPKFLKEFYNNSRLHHISSWGSECKTYVRQL 187
>gi|355565936|gb|EHH22365.1| hypothetical protein EGK_05609 [Macaca mulatta]
Length = 1267
Score = 231 bits (589), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 119/261 (45%), Positives = 167/261 (63%), Gaps = 19/261 (7%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E+ + + +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 547 AYKEVARTLYETL----ASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEIKD 602
Query: 1936 ETGCTCSTGF---------------GSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIP 1980
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+
Sbjct: 603 QTKCAASVGIEPVGRCHTQYTTGLEGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQL 662
Query: 1981 LSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTF 2040
+++LPGVG S+ KL SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ +
Sbjct: 663 VTNLPGVGCSMESKLASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRT 722
Query: 2041 EHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAP 2100
E +RKSVSAE+NYGIRF +E E FL L+ E+++RLE MKGK +TLK+MVR A AP
Sbjct: 723 EKERKSVSAEINYGIRFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKAGAP 782
Query: 2101 REASKFLGHGVCDYITKSSSL 2121
E +KF GHG+CD + ++ +L
Sbjct: 783 VETAKFGGHGICDNVARTVTL 803
Score = 137 bits (346), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/130 (57%), Positives = 91/130 (70%), Gaps = 16/130 (12%)
Query: 1316 KKKGGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
+K GGYM AK +KLEEQF +A G IF GVAI+VNGYT PSA
Sbjct: 16 EKWGGYMAAKVQKLEEQFRSDAALQKDGTSSTIFSGVAIYVNGYTD-----------PSA 64
Query: 1373 EELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKL 1431
EEL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+L
Sbjct: 65 EELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRL 123
Query: 1432 LDHKKYLLYT 1441
L + Y LYT
Sbjct: 124 LSYIPYQLYT 133
Score = 75.1 bits (183), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 39/54 (72%)
Query: 1678 TREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
R+ G+ NGMF GHA + CPNL+ VPYDF YKEV+ LY +AS T NIEAVS
Sbjct: 517 ARQLGIKNGMFFGHAKQLCPNLQAVPYDFHAYKEVARTLYETLASYTHNIEAVS 570
Score = 50.8 bits (120), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+LREW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1175 LAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1234
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1235 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1266
Score = 48.5 bits (114), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 1539 SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT 1589
S+ +F+ FY+ SRLHH+S ++VN L+ + +G+F G E ++K KT
Sbjct: 344 SDCNFISNFYSHSRLHHISMWKCELTEFVNTLQRQSNGIFPGREKLKKMKT 394
>gi|355751525|gb|EHH55780.1| hypothetical protein EGM_05048 [Macaca fascicularis]
Length = 1299
Score = 229 bits (585), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 118/261 (45%), Positives = 167/261 (63%), Gaps = 19/261 (7%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E+ + + +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 580 AYKEVARTLYETL----ASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEIKD 635
Query: 1936 ETGCTCSTGF---------------GSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIP 1980
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+
Sbjct: 636 QTKCAASVGIEPVGRCHTQYTTGLEGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQL 695
Query: 1981 LSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTF 2040
+++LPGVG S+ KL SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ +
Sbjct: 696 VTNLPGVGCSMESKLASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRT 755
Query: 2041 EHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAP 2100
E +RKSVSAE+NYGIRF +E E FL L+ E+++RLE +KGK +TLK+MVR A AP
Sbjct: 756 EKERKSVSAEINYGIRFTQPKEAEAFLLSLSEEIQRRLEATGVKGKRLTLKIMVRKAGAP 815
Query: 2101 REASKFLGHGVCDYITKSSSL 2121
E +KF GHG+CD + ++ +L
Sbjct: 816 VETAKFGGHGICDNVARTVTL 836
Score = 133 bits (334), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 98/152 (64%), Gaps = 27/152 (17%)
Query: 1316 KKKGGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLD-------- 1364
+K GGYM AK +KLEEQF +A G IF GVAI+VNGYT++ + +
Sbjct: 16 EKWGGYMAAKVQKLEEQFRSDAALQKDGTSSTIFSGVAIYVNGYTENRKLSEKEFGGKRL 75
Query: 1365 -----------AYYIV---PSAEELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKK 1409
A + V PSAEEL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+
Sbjct: 76 HSSGQFANLGVAAFTVKEDPSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKE 135
Query: 1410 LKPGDKIIKPEWIVDSISAGKLLDHKKYLLYT 1441
LK G+K+I+PEWIV+SI AG+LL + Y LYT
Sbjct: 136 LK-GEKVIRPEWIVESIKAGRLLSYIPYQLYT 166
Score = 75.5 bits (184), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 39/54 (72%)
Query: 1678 TREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
R+ G+ NGMF GHA + CPNL+ VPYDF YKEV+ LY +AS T NIEAVS
Sbjct: 550 ARQLGIKNGMFFGHAKQLCPNLQAVPYDFHAYKEVARTLYETLASYTHNIEAVS 603
Score = 50.8 bits (120), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+LREW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1207 LAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1266
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1267 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1298
Score = 50.4 bits (119), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 1539 SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT 1589
S+ +F+ FY+ SRLHH+ST ++VN L+ + +G+F G E ++K KT
Sbjct: 377 SDCNFISNFYSHSRLHHISTWKCELTEFVNTLQRQSNGIFPGREKLKKMKT 427
>gi|156408800|ref|XP_001642044.1| predicted protein [Nematostella vectensis]
gi|156229185|gb|EDO49981.1| predicted protein [Nematostella vectensis]
Length = 870
Score = 228 bits (581), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 131/324 (40%), Positives = 178/324 (54%), Gaps = 46/324 (14%)
Query: 1894 SESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQAR 1953
S S + AVSCDE ++D + L + P+ A +R I T C S G SN L AR
Sbjct: 411 SYSHDIEAVSCDEAFLDVTHSL-DAGTEPMALAQQIRAEIRAATRCNASAGISSNVLLAR 469
Query: 1954 LATKKAKPNGQFHLTPQI-ISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLK 2012
+ T+ AKP+GQF+L+ + + FM + DLPGVG +L KLN +G +TC DLQ +SL+
Sbjct: 470 MCTRIAKPDGQFYLSREDDVIQFMASQKAKDLPGVGWALSKKLNDMGVETCADLQKLSLQ 529
Query: 2013 RLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAG 2072
LQ E G K GL+L++ CRG DD+ L E +RKSVSAE+NYGIRF + E F+++LAG
Sbjct: 530 ALQKEFGPKTGLSLHRSCRGVDDRPLRVERERKSVSAEINYGIRFTQDYEGVKFIEELAG 589
Query: 2073 EVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITY 2132
EV KRL EV +KG+CITLKL VR AP
Sbjct: 590 EVHKRLREVGLKGRCITLKLKVRQEGAP-------------------------------- 617
Query: 2133 FLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVEL 2192
PR KF+GHG+CD +++S++L S I +E L ++ L + +
Sbjct: 618 ---------MPR---KFMGHGICDNVSRSATLVEPTDDNSVIARECLNLLKTLNIPAHDF 665
Query: 2193 RGIGIQVSKLEHQSKTLATIDTFF 2216
RG+GIQVSKL + S T+ F
Sbjct: 666 RGLGIQVSKLTNSSAGSKTLFDFM 689
Score = 221 bits (562), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 170/490 (34%), Positives = 243/490 (49%), Gaps = 99/490 (20%)
Query: 1319 GGYMEAKKRKLEEQF-----ELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAE 1373
GGYM+AK +KLE+QF E+ A+ +FQGV+I VNGYT VP A+
Sbjct: 1 GGYMKAKNQKLEQQFREDTKEVVADRGQTSLLFQGVSIHVNGYT-----------VPPAD 49
Query: 1374 ELKALMMLHGGIY-HHYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL 1432
EL+ L+ +GG Y H+Y S THIIA+NLP +KI++LK K+++P WI+DSI G+LL
Sbjct: 50 ELRRLIGQYGGRYVHYYSRSTVTHIIATNLPDSKIRELK-DKKVVQPNWILDSIKQGRLL 108
Query: 1433 DHKKYLLYTGTDAKPLTKLLQKSYFEN-------TEAPCCSKSLVETSSHTSTVSDSVDN 1485
YLL +G KP L+ S + ++ P S+ + S H + +SD+
Sbjct: 109 PINNYLLCSGR--KPSQAALRFSTTDTTTTNTATSKNPGFSR---KESLHGNAISDTATT 163
Query: 1486 TEESKSEAVNSEESKSEAA---------NPIESKQTVKT-----KESKLETVNISAPKPQ 1531
EE S+ N+ E A +P S K K + V++S +
Sbjct: 164 REEVLSKVQNTHEGTVTTAGESDLDVMYSPGRSGSPGKNSSAFDKSPGMSKVHVSISETS 223
Query: 1532 ASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSL 1591
+ A + +F+ +FY+ SRLH+LST G+ FKQ+ L + D V +GI ++
Sbjct: 224 PRKQRRAGDPNFVSDFYHNSRLHYLSTWGAEFKQFTANLIK--DRVSKGIGPNKR----- 276
Query: 1592 GITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAH---GKG 1648
P VIMHIDMDCFFVSV +R HPEL +PVAV+ G G
Sbjct: 277 ---------------SGPGVYGRVIMHIDMDCFFVSVYVRDHPELDGKPVAVSRFNGGGG 321
Query: 1649 NSSKVREGVDRQAEF------DIY----RQRTMNRM------GLNTREYGLGNGMFVGHA 1692
K V+ + F D+ N M RE G+ NGMF+G A
Sbjct: 322 CELKSSHIVNYEMSFPTGFVADLTSPDKSSAFFNSMSEIASCSYAARECGVRNGMFLGQA 381
Query: 1693 LKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLN------------ 1740
K CP++ VPY F+ Y++VS LY ++ S + +IEAVS +E+FL+
Sbjct: 382 RKLCPDITCVPYLFDKYRQVSQRLYEILVSYSHDIEAVS--CDEAFLDVTHSLDAGTEPM 439
Query: 1741 ALPEDIRQEV 1750
AL + IR E+
Sbjct: 440 ALAQQIRAEI 449
Score = 44.3 bits (103), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 1177 VNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQLI 1225
V++S + + A + +F+ +FY+ SRLH+LST G+ FKQ+ LI
Sbjct: 215 VHVSISETSPRKQRRAGDPNFVSDFYHNSRLHYLSTWGAEFKQFTANLI 263
>gi|241708827|ref|XP_002413345.1| terminal deoxycytidyl transferase rev1, putative [Ixodes scapularis]
gi|215507159|gb|EEC16653.1| terminal deoxycytidyl transferase rev1, putative [Ixodes scapularis]
Length = 904
Score = 226 bits (576), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 151/434 (34%), Positives = 226/434 (52%), Gaps = 73/434 (16%)
Query: 1322 MEAKKRKLEEQF----ELEANSDSRG--GIFQGVAIFVNGYTKHCMMLDAYYIVPSAEEL 1375
M AK +KLE+QF E+E + G IFQG+++FVNGYT PSAEE+
Sbjct: 1 MSAKVQKLEKQFLRNAEIEVSGTETGELAIFQGISVFVNGYTD-----------PSAEEI 49
Query: 1376 KALMMLHGGIYHHYESSR-TTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDH 1434
K +MM+HGG Y HY + ++I++NLP K+K L+ D +++P WI D + AG LL
Sbjct: 50 KRIMMVHGGTYQHYYKRKPKCYMISTNLPMAKLKSLR--DYVVRPSWITDCVKAGMLLPV 107
Query: 1435 KKYLLYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTS------TVSDSVDNTEE 1488
+ YLLY+ D K +++ + + + ++ +H + +SVD E
Sbjct: 108 QDYLLYS-PDLKKGQQMINRVQLADDSG---TSAMTSAEAHNDEQDGWLSSDNSVDCNLE 163
Query: 1489 SKSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFY 1548
E ++ +++ ++ +P Q K+ +S P+ QA + FL EFY
Sbjct: 164 C--EQLHGDQNGTDHGSP---PQEHKSNDS---------PRYQAGDPR------FLQEFY 203
Query: 1549 NKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPS 1608
+SRLHH+ST + YV +LR + F G++ + K+ L E++ L E
Sbjct: 204 GRSRLHHISTASLKLRDYVAQLRSAGNFNFVGVQ---RLKSHL---EEQTLAERVQ---- 253
Query: 1609 PSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQ 1668
P V+MHIDMDCFFVSVG+R P L+ +PVAV HGK + R ++
Sbjct: 254 --VPGKVLMHIDMDCFFVSVGLRSRPHLKGKPVAVCHGKNGGIQPSSSHSRASDVPGTSG 311
Query: 1669 RTMNRMGL-----------NTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLY 1717
+ GL R+ G+ +GMF+G A + CPNL +PY+FE Y EVS LY
Sbjct: 312 SGADGKGLMSMSEVASCSYEARDAGVRSGMFLGRAKQLCPNLVAIPYEFESYSEVSKILY 371
Query: 1718 NLIASLTLNIEAVS 1731
+ +AS TL+IEAVS
Sbjct: 372 DTVASYTLDIEAVS 385
Score = 223 bits (569), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 132/350 (37%), Positives = 185/350 (52%), Gaps = 52/350 (14%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDE+Y D +++LQE TP FAS+LR+ I ++T CT S G G N L AR+A +
Sbjct: 381 IEAVSCDELYADVTKVLQEAECTPNDFASFLRKEIEEKTCCTASVGLGPNMLAARVANRS 440
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKPNG ++ + +F + + LPGVG+ L +L +G +TC LQ +S++ L+++
Sbjct: 441 AKPNGHRFVSTSELLEFFKAVAVKHLPGVGYRLQSQLTDMGIETCEQLQAVSMETLKSKF 500
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
G K G L++H RG DDK L F RKSVSAEVNYGIRF+ +M F+ QL+ EVEKRL
Sbjct: 501 GVKTGTLLFQHARGSDDKVLQFNKVRKSVSAEVNYGIRFKEANDMNKFIGQLSEEVEKRL 560
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVR 2138
E ++G+ ++LKL VR +AP +KF+GHG+CD ITKS L
Sbjct: 561 REAGVQGRAVSLKLKVRQKDAPLNPTKFMGHGMCDNITKSVQL-----------LAATSS 609
Query: 2139 SAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQ 2198
+A RE C+ + +L + P ++RG+GIQ
Sbjct: 610 AAAISREC--------CN------------------------LAAQLHLVPSDIRGVGIQ 637
Query: 2199 VSKLEH----QSKTLATIDTFFTNK-----GKPPDQLNNPRPGPSNSTIT 2239
V +LE QS T+ F T+ P PG ST T
Sbjct: 638 VGRLEPRPGVQSCASKTMLDFLTDNRSTLGAAHPSAREGATPGEGGSTAT 687
Score = 56.2 bits (134), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 89/201 (44%), Gaps = 50/201 (24%)
Query: 1728 EAVSL----YTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPL--AQDIICADSH 1781
+AVSL + + L +LPEDIRQEVL + RE P A++ + +
Sbjct: 697 QAVSLPAFSEIDPAVLESLPEDIRQEVL--------TMYRESRRNPPRTNAREDVSGITG 748
Query: 1782 TLVRTPS---PSPILDMSTSILDTTTS-------------------------------HI 1807
T V + S P P L T S +
Sbjct: 749 TAVASTSGTKPKPPLGKRKGRPPKTASPQKARGPACHSLREYMVKPAAALATAAEPSLSV 808
Query: 1808 LSSNVSLQEMRTMLREWMCESQPEPS--DIEMFSEYLSNLVEERHLNPIVILLRFLRRHV 1865
+SS +++++ +L+EW+C E S D++ +++ L +V+ER+L + +LL+F R V
Sbjct: 809 ISSKDKMEKVKMLLQEWICSRDGEISNTDVDAWTQLLGGVVQERNLEKLDLLLKFFYRTV 868
Query: 1866 GKKESTVWAEAYQEMLSCVQS 1886
+ S W + Y ++++ VQ+
Sbjct: 869 QRSGSKKWEDTYMKVINVVQT 889
>gi|47226899|emb|CAG05791.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1313
Score = 225 bits (574), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 128/335 (38%), Positives = 194/335 (57%), Gaps = 50/335 (14%)
Query: 1875 EAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIA 1934
EAY+E V M + + + A+SCDE+ +D S LL EL + P + A +R I
Sbjct: 663 EAYKE----VALTMYDTLAGYTHDIEALSCDELLMDTSALLAELCVNPEELAKAIRADIK 718
Query: 1935 KETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFK 1994
++TGC S G GSN L ARLAT+KAKP+GQ+ L + + DF+ ++P++ LPGVG + K
Sbjct: 719 EKTGCCASVGMGSNILLARLATRKAKPDGQYFLRSEDVDDFIRDLPVTSLPGVGPVMSRK 778
Query: 1995 LNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYG 2054
L ++G ++CGDLQ +S+ +LQ + G + G TL++ RG DD+ + +E +RKSVSA++NY
Sbjct: 779 LAAMGVRSCGDLQQVSMSQLQKKFGPRTGQTLFRFSRGLDDRPVRYEKERKSVSADMNYN 838
Query: 2055 IRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDY 2114
IRF E E FL L+ EV+KRL+E ++G+ +TLK+MVR AP+E +K+ GHG+CD
Sbjct: 839 IRFTTVDEAECFLTNLSMEVQKRLQEAGLRGRRVTLKVMVRKVGAPQEPAKYGGHGICDN 898
Query: 2115 ITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQI 2174
+ ++ ++L S + R A+ +
Sbjct: 899 LART---------------VMLAASTDDGRLI------------------------AAAV 919
Query: 2175 LKEVLFIVNKLKVDPVELRGIGIQVSKLE---HQS 2206
+K LF KL+V +LRG+GIQV L+ HQ+
Sbjct: 920 IK--LFHAMKLQVQ--DLRGVGIQVQLLDGNAHQA 950
Score = 132 bits (333), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 89/129 (68%), Gaps = 18/129 (13%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSR-----GGIFQGVAIFVNGYTKHCMMLDAYYIVPSAE 1373
GGYM AK KL+EQF+L+A + IF GV+I+VNGYT+ PSA+
Sbjct: 1 GGYMAAKVSKLQEQFKLDAPKEKHKEGLSSDIFFGVSIYVNGYTE-----------PSAD 49
Query: 1374 ELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL 1432
EL+ LMMLHGG +H +Y + TTHIIA+NLPH+K+K+LK G K+I+PEWI DS+ AG+LL
Sbjct: 50 ELRRLMMLHGGQFHAYYSRTNTTHIIANNLPHSKVKELK-GQKVIRPEWITDSVKAGRLL 108
Query: 1433 DHKKYLLYT 1441
H +Y LY
Sbjct: 109 PHLQYQLYA 117
Score = 119 bits (299), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 130/291 (44%), Gaps = 86/291 (29%)
Query: 1538 ASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNEL--REKHDGV--FRGIEAIRKWKTSLGI 1593
A + EFY+ SRLH +ST + F +YVNEL R K G F G E +RK+
Sbjct: 439 AQTSGLISEFYSHSRLHQISTWRNSFSEYVNELHSRRKAAGARSFPGKERLRKFGAH--- 495
Query: 1594 TEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKV 1653
E + + P + I H+DMDCFFVSV IR+ P+L+ +PVAV +G + +
Sbjct: 496 QEGQGV---------PFGVKSCIFHVDMDCFFVSVAIRNRPDLKGKPVAVTSNRGAGTVL 546
Query: 1654 -REGVDRQ----------------------------------------AEFDIYRQRTMN 1672
R G + Q A+ D+YR + +
Sbjct: 547 QRPGANPQLEQHYYQWKQSHPESGEHVGTVVFTVLEEHVPLHVFICPTADEDLYRTPSQD 606
Query: 1673 RMGLNT----------------------REYGLGNGMFVGHALKKCPNLKIVPYDFEGYK 1710
G +T R+ G+ NGMF G A + CP+L+ VPYDFE YK
Sbjct: 607 GPGTHTGGAGQEAAALSMAEIASCSYEARQAGVRNGMFFGKAKQLCPSLQAVPYDFEAYK 666
Query: 1711 EVSYCLYNLIASLTLNIEAVS----LYTNESFLNAL---PEDIRQEVLDDL 1754
EV+ +Y+ +A T +IEA+S L + L L PE++ + + D+
Sbjct: 667 EVALTMYDTLAGYTHDIEALSCDELLMDTSALLAELCVNPEELAKAIRADI 717
Score = 49.7 bits (117), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ L ++R +LREW+ ++P DI +Y ++L+E++ L + +++++++R +
Sbjct: 1221 LAGACDLTDIRALLREWVTTITEPMEEDILQVVKYCTDLIEDKDLEKLDLIIKYMKRLMK 1280
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW+ A+ +L VQ ++ S K+
Sbjct: 1281 QSAESVWSMAFDFVLDNVQVVLQQTYGSTLKV 1312
>gi|297039743|pdb|3L4J|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Apo
gi|297039748|pdb|3L4K|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Metal-Bound
Length = 722
Score = 224 bits (572), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 114/183 (62%), Positives = 141/183 (77%), Gaps = 7/183 (3%)
Query: 453 TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVRE 512
T PKLEDAN AGTK CTL+LTEGDSA SLAV+GL VVGRD YG +PLRGK+LNVRE
Sbjct: 4 TNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVRE 63
Query: 513 ATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIIN 572
A+ QIL+NAEI + KI+GLQ+ KKY ED K+LRYG LMIMTDQD DGSHIKGLIIN
Sbjct: 64 ASADQILKNAEIQAIKKIMGLQHRKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIIN 120
Query: 573 FIHHNWPTLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFEEWKEETTNWHTYKIK 628
F+ ++P LL + FL EFITPIIK + + ++FY++P++E+W+EE ++ T+K K
Sbjct: 121 FLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQK 180
Query: 629 YYK 631
YYK
Sbjct: 181 YYK 183
Score = 113 bits (283), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 73/113 (64%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PI+PM+LVNGAEGIGTGW T IP NP EI+ NI+ ++ E+ M PW++ +
Sbjct: 394 VEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGW 453
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G I+ R+ + G I + D+ LEITEL WT+ K+ L L G +K
Sbjct: 454 TGTIEEIEPLRYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDK 506
Score = 54.7 bits (130), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
Y+YLLGM WSLT ER +LLK++ +K TEL L K + D+W+ DL A
Sbjct: 658 YEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAF 707
>gi|195336364|ref|XP_002034810.1| GM14350 [Drosophila sechellia]
gi|194127903|gb|EDW49946.1| GM14350 [Drosophila sechellia]
Length = 817
Score = 222 bits (565), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 115/243 (47%), Positives = 159/243 (65%), Gaps = 3/243 (1%)
Query: 1912 SQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHL-TPQ 1970
+ L+ EL++ + F S++R+ + +TGCTCS G SNKL AR+ATK+AKPNGQ L +
Sbjct: 242 TDLVDELNVDVMAFVSHIRQEVYSKTGCTCSAGVASNKLLARMATKEAKPNGQLLLDSKN 301
Query: 1971 IISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHC 2030
I +M + L LPGVG S+ KL G CGD+Q +L RL+ +G K G L+++C
Sbjct: 302 DILAYMAPMSLDLLPGVGSSMSHKLKQAGLNNCGDVQKTTLGRLERVLGKKLGQNLFQNC 361
Query: 2031 RGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITL 2090
RG DD+ L +E RK+VSAE+N+GIRF N+ E E FL QL+ EV KRL E+K K + + L
Sbjct: 362 RGIDDRPLAYEQARKTVSAEMNFGIRFTNSAECEQFLCQLSHEVTKRLVEIKRKARSVNL 421
Query: 2091 KLMVRSAEAPREASKFLGHGVCDYITKSSSL--PIYERPLIITYFLLLVRSAEAPREASK 2148
K+MVR+AEAP E SK++GHGVCD I KSS + + +I T L L++ A+ P +
Sbjct: 422 KIMVRAAEAPVETSKYMGHGVCDTINKSSLIKHATDDVNVITTVVLNLMKEADIPPHELR 481
Query: 2149 FLG 2151
LG
Sbjct: 482 GLG 484
Score = 150 bits (378), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 136/252 (53%), Gaps = 20/252 (7%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKAL 1378
GGY EAKK KLEEQF ++ + +F+G++I+VNG T PSA+ELK +
Sbjct: 13 GGYFEAKKSKLEEQFAAASDPFRKSDLFEGISIYVNGRTD-----------PSADELKRI 61
Query: 1379 MMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYL 1438
MM+HGG +HHYE S TT+IIAS LP K++ + K I +W+VD + K++D+K YL
Sbjct: 62 MMVHGGTFHHYERSHTTYIIASVLPDVKVRNMNLS-KFISAKWVVDCLEKKKIVDYKPYL 120
Query: 1439 LYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSEAVNSEE 1498
LYT + K + SKS VE DS ++ + + +
Sbjct: 121 LYTNQKTSQPRLMFGKPKDNDAND---SKSDVEPFGGAEMEVDSTNDETQMELGGILKHL 177
Query: 1499 SKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLST 1558
++ A +P + + K N+S +++ + A++ +FL EFY SRLHH++T
Sbjct: 178 HQAVATSPEKEDSASENK-----ITNLSTTSNNSTTARTAADPNFLSEFYKNSRLHHIAT 232
Query: 1559 MGSMFKQYVNEL 1570
+G+ FKQ + +L
Sbjct: 233 LGTGFKQELTDL 244
Score = 48.9 bits (115), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 33/48 (68%)
Query: 1178 NISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQLI 1225
N+S +++ + A++ +FL EFY SRLHH++T+G+ FKQ + L+
Sbjct: 198 NLSTTSNNSTTARTAADPNFLSEFYKNSRLHHIATLGTGFKQELTDLV 245
>gi|125525059|gb|EAY73173.1| hypothetical protein OsI_01045 [Oryza sativa Indica Group]
Length = 408
Score = 221 bits (563), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 144/415 (34%), Positives = 208/415 (50%), Gaps = 78/415 (18%)
Query: 43 EHILLRPDTYIGSVEP-ITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQR 101
E IL RPD YIGS E T+T W+ + +M RE+TY PGL++IFDE+LV+A NK+R
Sbjct: 29 ERILRRPDGYIGSPEKRSTQTFWI--NDGYYMVPREVTYRPGLHRIFDEVLVHAASNKRR 86
Query: 102 DPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKV 161
DP M+ + + V+ ++SV+ NG+G+ VE DE+ V
Sbjct: 87 DPSMDTLSVEVDVVERSVSVFYNGRGVVPVELVDEERGV--------------------- 125
Query: 162 TGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQV 221
P M FGHL +D+ G GYG KL N+FS++F++ET+ K +KQV
Sbjct: 126 --YAPEMFFGHLHDDDEEDDQNKATNDGGGGYGVKLANLFSTEFIIETADGCRMKKYKQV 183
Query: 222 WKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKD 280
+ +NM K + P I ++ +++T ITF PDL +F MT L++D V L+ +R D A D
Sbjct: 184 FSENMGKKSVPHITDCNQGENWTIITFKPDLARFNMTYLEEDHVTLMWKRVVDMAGILGD 243
Query: 281 -VKVFLNGEKLPVKNFQDYVKLYTDR--QDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQ 337
V+V +G +L + +F DYV+LY D D G +YE +N + +
Sbjct: 244 SVQVEWDGVRLRINSFNDYVRLYIDSPVSDRSGAGFPRVYEKLND------------WCE 291
Query: 338 VSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQM 397
V FVN T KGG HVD V + I ++ N+ N +
Sbjct: 292 VRFVNGFETLKGGTHVDYVTELITTHLM-----------------------NLLNEHYEE 328
Query: 398 AKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS 452
+D VK ++W+F+N +I NPTFDSQTKE +T G GS
Sbjct: 329 CNFNVD-------------DVKRYLWVFLNVIIDNPTFDSQTKETLTTPPGRLGS 370
>gi|255553520|ref|XP_002517801.1| DNA topoisomerase II, putative [Ricinus communis]
gi|223543073|gb|EEF44608.1| DNA topoisomerase II, putative [Ricinus communis]
Length = 197
Score = 221 bits (563), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 111/205 (54%), Positives = 140/205 (68%), Gaps = 27/205 (13%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYK 86
ANK ++E+ YQKKSQLEHILLRPDTYIGS+E T+T+W+ E M R +TYVPGLYK
Sbjct: 16 ANKKTIEETYQKKSQLEHILLRPDTYIGSIEKHTQTLWVY--EDEKMVNRNVTYVPGLYK 73
Query: 87 IFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFG 146
IFDEILVNA DNKQRDP M+ +K+ ++ E N ISV+NNG G+PV HK+E ++VP +IFG
Sbjct: 74 IFDEILVNAADNKQRDPTMDALKVVIDVENNMISVYNNGDGVPVEIHKEEGVYVPELIFG 133
Query: 147 HLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFV 206
HLLTSSN Y+D K TGGRNGYGAKL NIFS++FV
Sbjct: 134 HLLTSSN-------------------------YDDTVKKTTGGRNGYGAKLTNIFSTEFV 168
Query: 207 VETSCSEYKKSFKQVWKDNMSKVTS 231
+ET+ + +K +KQ+ K + TS
Sbjct: 169 IETADGKRQKKYKQMGKIGSERRTS 193
>gi|157830305|pdb|1BGW|A Chain A, Topoisomerase Residues 410-1202
gi|157830349|pdb|1BJT|A Chain A, Topoisomerase Ii Residues 409-1201
Length = 793
Score = 221 bits (562), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 113/183 (61%), Positives = 140/183 (76%), Gaps = 7/183 (3%)
Query: 453 TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVRE 512
T PKLEDAN AGTK CTL+LTEGDSA SLAV+GL VVGRD YG +PLRGK+LNVRE
Sbjct: 16 TNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVRE 75
Query: 513 ATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIIN 572
A+ QIL+NAEI + KI+GLQ+ KKY ED K+LRYG LMIMTDQD DGSHIKGLIIN
Sbjct: 76 ASADQILKNAEIQAIKKIMGLQHRKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIIN 132
Query: 573 FIHHNWPTLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFEEWKEETTNWHTYKIK 628
F+ ++ LL + FL EFITPIIK + + ++FY++P++E+W+EE ++ T+K K
Sbjct: 133 FLESSFLGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQK 192
Query: 629 YYK 631
YYK
Sbjct: 193 YYK 195
Score = 113 bits (282), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 73/113 (64%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PI+PM+LVNGAEGIGTGW T IP NP EI+ NI+ ++ E+ M PW++ +
Sbjct: 405 VEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGW 464
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G I+ R+ + G I + D+ LEITEL WT+ K+ L L G +K
Sbjct: 465 TGTIEEIEPLRYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDK 517
Score = 54.3 bits (129), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
Y+YLLGM WSLT ER +LLK++ +K TEL L K + D+W+ DL A
Sbjct: 705 YEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAF 754
>gi|163931058|pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-segment Dna
Length = 759
Score = 221 bits (562), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 113/183 (61%), Positives = 140/183 (76%), Gaps = 7/183 (3%)
Query: 453 TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVRE 512
T PKLEDAN AGTK CTL+LTEGDSA SLAV+GL VVGRD YG +PLRGK+LNVRE
Sbjct: 6 TNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVRE 65
Query: 513 ATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIIN 572
A+ QIL+NAEI + KI+GLQ+ KKY ED K+LRYG LMIMTDQD DGSHIKGLIIN
Sbjct: 66 ASADQILKNAEIQAIKKIMGLQHRKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIIN 122
Query: 573 FIHHNWPTLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFEEWKEETTNWHTYKIK 628
F+ ++ LL + FL EFITPIIK + + ++FY++P++E+W+EE ++ T+K K
Sbjct: 123 FLESSFLGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQK 182
Query: 629 YYK 631
YYK
Sbjct: 183 YYK 185
Score = 113 bits (282), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 73/113 (64%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PI+PM+LVNGAEGIGTGW T IP NP EI+ NI+ ++ E+ M PW++ +
Sbjct: 395 VEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGW 454
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G I+ R+ + G I + D+ LEITEL WT+ K+ L L G +K
Sbjct: 455 TGTIEEIEPLRYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDK 507
Score = 54.7 bits (130), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
Y+YLLGM WSLT ER +LLK++ +K TEL L K + D+W+ DL A
Sbjct: 695 YEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAF 744
>gi|452818404|gb|EME25761.1| DNA topoisomerase II, partial [Galdieria sulphuraria]
Length = 782
Score = 220 bits (561), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 199/609 (32%), Positives = 285/609 (46%), Gaps = 88/609 (14%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y++ H+L PDTY+GS+EP WLM+ + + + IT GL ++F E L NA
Sbjct: 5 YRRLDHRTHVLEIPDTYVGSIEPYPRKEWLMSVD-GKISSQTITLPSGLERLFIEALSNA 63
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWN-NGKGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
D+ R I + V + I + N GKGIP+ + D S Y
Sbjct: 64 VDDLNRAANRQGI-VIVQCDPFFIEIENRGGKGIPLTKWDD----------------SLY 106
Query: 155 NDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEY 214
VP +IFG LLTSSNY +E + GRNG+G KLCNIFS+K V S+
Sbjct: 107 ----------VPELIFGELLTSSNYTEE--RYYSGRNGFGIKLCNIFSTKLSVRIIDSK- 153
Query: 215 KKSFKQVWKDNM--------SKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDL 266
++Q W++NM SKV+ E S + F P+ ++FK ++ + +
Sbjct: 154 GSCYEQSWENNMAVKNPITWSKVSKKEGPS------VIVRFYPEFSRFKKECFSEEDLGV 207
Query: 267 ITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEV 326
R +A+ T +F N E V Y + + D P+ ++ + N
Sbjct: 208 FRRHVLEASLVTGCTCLFNNFEFSRV-TLHSYAEKFVDY------PITAVFSSGNNE--- 257
Query: 327 AIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNK 386
+D+ VSFVN I T G HVDA++ + K + + KK I FG
Sbjct: 258 -TLLTDQQGLCVSFVNGIRTIDDGTHVDALLKEL-KTSLGITTKKI--FATAIKAKFGIF 313
Query: 387 FN-NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTL 445
+ VKN K +G ++LK ++KN W + + +F Q+K T
Sbjct: 314 LSIRVKNPKFNAQTKDRLVGPADIPLSLKTKELKN--WPY---FLEVKSFLEQSKVPKTA 368
Query: 446 QKGSFGSTCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGV-VGRDKYGVFPLR 504
G + L+DAN AG K CTL+LTEG SA S AV + RD YGVFPLR
Sbjct: 369 AAGH--KLQIKDLDDANWAG-KQPEKCTLLLTEGKSAMSYAVKAISFHASRDMYGVFPLR 425
Query: 505 GKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGS 564
GK+LNV + + EI + K LGL LRYGR++++ D D DG
Sbjct: 426 GKVLNVADDKST----SREIGLVEKALGLP----------QGPLRYGRVVVLADSDLDGK 471
Query: 565 HIKGLIINFIHHNWPTLLRL--PFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNW 622
HI LI+N+ +P LL+ PFL TPIIKAT+ + + +FYS EF W +
Sbjct: 472 HILALILNWFATKYPHLLKQHPPFLGFLRTPIIKATRGQTKKNFYSEEEFRLWPDAQD-- 529
Query: 623 HTYKIKYYK 631
++KI+Y K
Sbjct: 530 RSWKIRYLK 538
Score = 54.3 bits (129), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIK 701
++EPE+ +PIIP+ LVNG GI TG+ T IP H+P +V +K
Sbjct: 740 QVEPEFLLPIIPLALVNGVSGIATGFRTWIPPHDPLTVVQLVK 782
>gi|181330398|ref|NP_001116772.1| DNA repair protein REV1 [Danio rerio]
Length = 1268
Score = 217 bits (553), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 129/328 (39%), Positives = 189/328 (57%), Gaps = 47/328 (14%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E V AM +S + + A+SCDE VD + LL EL ++P + A +RE I +
Sbjct: 584 AYKE----VALAMYEILASYTHNIEALSCDEALVDATALLVELGVSPDELARSIREDIKE 639
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+TGC S G SN L AR+AT+KAKP GQ+ L + + DF+ + P+S LPGVG S+ KL
Sbjct: 640 KTGCCASVGMSSNILLARMATRKAKPKGQYLLRSEEVDDFIRDQPVSSLPGVGRSMSSKL 699
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG TCGDLQ +SL +LQ E G + G TL++ CRG DD+ + E +RKSVSAE+NY I
Sbjct: 700 TSLGVSTCGDLQQLSLSQLQREFGPRTGQTLFRFCRGLDDRPVRSEKERKSVSAEMNYNI 759
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E+FL L+ EV+KRLE ++G+ +TLK+M+R AP E +K+ GHG+CD
Sbjct: 760 RFTQVEEAESFLNNLSMEVQKRLEGAGLRGRRVTLKVMMRKPGAPVEPAKYGGHGICDNF 819
Query: 2116 TKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL 2175
+S +LL + ++ R I
Sbjct: 820 ARS---------------VLLAQPTDSGRV----------------------------IA 836
Query: 2176 KEVLFIVNKLKVDPVELRGIGIQVSKLE 2203
E + + + +K++ ++RG+G+QV +L+
Sbjct: 837 SEAIKLFHAMKLNVKDMRGVGLQVQQLD 864
Score = 144 bits (363), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 103/364 (28%), Positives = 164/364 (45%), Gaps = 64/364 (17%)
Query: 1433 DHKKYLLYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSE 1492
DH +++ ++ + L Q Y E E PCCS + + +SH ++ + ++
Sbjct: 261 DHHPHVVDKASNQ---SHLPQDKYREGEE-PCCSYTESKANSHLRSLISAASPAKQPGPH 316
Query: 1493 AVNSEESKSEAANP----------IESKQTVKTKESKLETVNISA-PKPQASSTKNASNE 1541
+ ++ + +N + + TV+ S T N S S K+++
Sbjct: 317 NMQTDLHQKPTSNSGTLGAPQKASLHDQTTVRLNGSYHVTSNSSTLANSSNQSGKSSAEA 376
Query: 1542 DFLGEFYNKSRLHHLSTMGSMFKQYVNEL----REKHDGVFRGIEAIRKWKTSLGITEDE 1597
+ EF++ SRLHH+ST + F +YVN L R VF G E ++K K +
Sbjct: 377 GIISEFFSHSRLHHISTWRNEFSEYVNSLQSRRRAAGGAVFSGREKLKKLKANCNSVSHF 436
Query: 1598 DLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKV-REG 1656
D + +P + ++H+DMDCFFVSVGIRH P+L +PVAV +G R G
Sbjct: 437 DPGSLMA---APQVRQSCVLHVDMDCFFVSVGIRHRPDLIGKPVAVTSNRGPGRVAQRPG 493
Query: 1657 VDRQAEFDIYRQRT---------------------------------------MNRMGLN 1677
+ Q EF Y+ + +
Sbjct: 494 ANPQLEFQYYQNKQKHYRKEKTDGDLEMTPSPQDGEVPSNGVHEDLAALSMAEIASCSYE 553
Query: 1678 TREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNES 1737
R+ G+ NGMF G A + CP+L+ VPYDF YKEV+ +Y ++AS T NIEA+S +E+
Sbjct: 554 ARQAGVRNGMFFGRAKQLCPDLQSVPYDFHAYKEVALAMYEILASYTHNIEALS--CDEA 611
Query: 1738 FLNA 1741
++A
Sbjct: 612 LVDA 615
Score = 128 bits (321), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/130 (51%), Positives = 89/130 (68%), Gaps = 18/130 (13%)
Query: 1318 KGGYMEAKKRKLEEQFELEANSDSR-----GGIFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
+GGYM AK KLEEQF+ +A + + IF GVAI+VNGYT PSA
Sbjct: 19 QGGYMAAKVSKLEEQFQKDAPREQKKDGKSSCIFSGVAIYVNGYTD-----------PSA 67
Query: 1373 EELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKL 1431
EL+ LMMLHGG +H +Y S+TTHIIA+NLP+ KI++LK G+K+++PEWI+DSI AG+
Sbjct: 68 AELRRLMMLHGGQFHLYYSRSKTTHIIATNLPNFKIQELK-GEKVVRPEWIIDSIKAGRQ 126
Query: 1432 LDHKKYLLYT 1441
L + +Y LY
Sbjct: 127 LSYIQYQLYA 136
Score = 52.4 bits (124), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ E+RT+LREW+ S+P DI +Y + LVE++ L + +++++++R +
Sbjct: 1176 LAGAHEFSEIRTLLREWVTTISEPMEEDILQVVKYCTELVEDKDLEKLYLVIKYMKRLMQ 1235
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKIV 1899
+ +VW+ A+ +L VQ ++ S KI
Sbjct: 1236 QSSESVWSMAFDFVLDNVQVVVQQTYGSTLKIT 1268
>gi|198436132|ref|XP_002123738.1| PREDICTED: similar to GH15415 [Ciona intestinalis]
Length = 593
Score = 216 bits (551), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 167/491 (34%), Positives = 232/491 (47%), Gaps = 113/491 (23%)
Query: 1319 GGYMEAKKRKLEEQF-ELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
GGYMEAK +KLE+QF E + ++ IF VAI VNGYT P+A+ELK
Sbjct: 19 GGYMEAKIQKLEKQFQEKSSRNEQLSSIFNKVAIHVNGYTN-----------PTADELKT 67
Query: 1378 LMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKK 1436
LM HGG YH +Y S+ TTH+IASNLP K K LKP KI++PEWIV+SI+AG LL +
Sbjct: 68 LMAKHGGKYHAYYNSNYTTHVIASNLPRAKAKDLKPNQKIVRPEWIVESITAGTLLPIQP 127
Query: 1437 YLLYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSEAV-N 1495
YLL + L K + V SS+ ST D T + K EA N
Sbjct: 128 YLLVANSSVSRQKILTSK-----------KEDKVNPSSNPSTSKCIEDTTPQVKPEAGEN 176
Query: 1496 SEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHH 1555
+ + + AN + Q ++ SK+ ++ FL EFY SRLH
Sbjct: 177 TPQCSTVVANHV--NQQANSRTSKIAAT---------------TDSGFLDEFYANSRLHF 219
Query: 1556 LSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPV 1615
+ST + +V L + ++ G E + L +T+++ + V
Sbjct: 220 ISTWKNDLADFVRSLSQ-NNQPLTGKEEL------LKLTKEQKGNLLLNGK--------V 264
Query: 1616 IMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS---SKVREGVDRQAEFDIYRQRT-- 1670
IMHIDMDCFFVSVG+ P L+ PVAV H ++ K R G D E Y+++
Sbjct: 265 IMHIDMDCFFVSVGLLSRPHLKGRPVAVTHHSSSTPSEHKQRPGTDPNFERSYYKEKLGK 324
Query: 1671 -------MNRMG-----------------------------LNTREYGLGNGMFVGHALK 1694
N +G R GL NGMF G A +
Sbjct: 325 NFEQKFPSNPVGPSNPSDGQASGSASKANTVPSYSEIASCSYEARAAGLRNGMFYGRAKE 384
Query: 1695 KCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLN-------------A 1741
CP+L +PYDFE YK++S LY ++AS T ++EAVS +E+ L+
Sbjct: 385 LCPDLIAIPYDFEAYKDISQKLYTVLASYTQSLEAVS--CDEALLDVTQLVEDTSLTPQV 442
Query: 1742 LPEDIRQEVLD 1752
+ ++IR ++LD
Sbjct: 443 IAQNIRGKILD 453
Score = 165 bits (418), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 125/200 (62%), Gaps = 4/200 (2%)
Query: 1875 EAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIA 1934
EAY+++ + + + +S ++ + AVSCDE +D +QL+++ SLTP A +R I
Sbjct: 397 EAYKDISQKLYTVL----ASYTQSLEAVSCDEALLDVTQLVEDTSLTPQVIAQNIRGKIL 452
Query: 1935 KETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFK 1994
TGC S G G N AR+AT+ KPNGQ +T Q +F+ ++P+ DLPGVG + +
Sbjct: 453 DATGCNASAGIGPNIALARMATRLGKPNGQHEVTLQQAEEFIRDLPVKDLPGVGRATASR 512
Query: 1995 LNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYG 2054
L LGA TCG+LQ I L+ E GNK G L++ +G D++E+ +RKSVSA+VNYG
Sbjct: 513 LRELGASTCGELQKIHPDLLKKEFGNKTGQKLHELSKGIDEREVCQSKERKSVSADVNYG 572
Query: 2055 IRFQNNQEMETFLKQLAGEV 2074
IR + EM+TFL L+ EV
Sbjct: 573 IRLKTEDEMKTFLNNLSNEV 592
>gi|73852918|ref|YP_294202.1| putative DNA topoisomerase [Emiliania huxleyi virus 86]
gi|72415634|emb|CAI65871.1| putative DNA topoisomerase [Emiliania huxleyi virus 86]
gi|283481658|emb|CAZ69774.1| putative DNA topoisomerase [Emiliania huxleyi virus 99B1]
Length = 1103
Score = 213 bits (542), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 189/622 (30%), Positives = 289/622 (46%), Gaps = 66/622 (10%)
Query: 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFD 89
MS +K+ Q +Q +HIL RP Y+G VEP+ +M T +E+ VP L KI +
Sbjct: 1 MSDQKM-QVLTQHDHILARPGMYVGGVEPVEYNKEVMTM-TGPKHVKEMM-VPALLKIIE 57
Query: 90 EILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
E L NA D Q +P IK+T +Q ++I + N K V+E +VP
Sbjct: 58 EPLANASDASQNNPVAKNIKVTTDQRDSSIKIETNTKF--VIE------YVP-------- 101
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
D D + +T +N+ D+++ G++G G KL N+FS F V
Sbjct: 102 ------DGNDYSVA----LAVSRFMTGTNFGDDDESFKLGQHGLGIKLTNVFSKYFEVVV 151
Query: 210 SCSEYKKSFKQVWKDNMSKVTSPEIKSGS-KDDFTKITFTPDLTKFKMTS-LDKDMVDLI 267
K+S+ +W +NM V +K S K + ITF PDL F + L D+I
Sbjct: 152 HDPSTKQSYHGIWTNNMYTVEKSVVKKASHKTPYVSITFIPDLPYFGLRGPLTAGQWDII 211
Query: 268 TRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVK-LYTDRQDEDG-DPVKIIYENVNPRW 324
+ +D A + K V LNGEK+P K + Y++ + D D+ D V++ N R
Sbjct: 212 HSQVFDLAVTAPKHTTVHLNGEKIPFKGIKGYIQAVMGDSLDKICMDKVEV---NGTVRL 268
Query: 325 EVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK---NKDLGCTIIM 381
EVA+ + + + +VN TT+G H D I K I + KK N + +++
Sbjct: 269 EVAVTIARDHAESIVYVNGAHTTRGTIH-----DYIFKNIANALSKKHNINPSMLRGLLL 323
Query: 382 LFGNKFNNVKNNKL-QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDS--- 437
+ + + N + AK + V G Q FI L + S
Sbjct: 324 IVAEAW--IPNARFTSQAKEELYTPVSKYGFKWDLSQS------FIKSLAKTDLYTSVVN 375
Query: 438 ---QTKENMTLQKGSFGSTCVPKLEDANDAGTKNSI-DCTLILTEGDSAKSLAVSGLGVV 493
+ + G +P+ + A + D L++TEGDSAK LA G V
Sbjct: 376 LLHDKDDKKAQKDMKVGKNKIPQFAKYDPATKLFKVNDAELLITEGDSAKQLANVGRNAV 435
Query: 494 GRD-KYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGR 552
R G++PLRGKL+N ++ K + N EI+ L++ILG+ KKY + + L Y
Sbjct: 436 KRHANMGLYPLRGKLMNAGNSSLKALAANKEISELIQILGITPYKKY-DLASARALPYRH 494
Query: 553 LMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL--PFLEEFITPIIKATKAREE-LSFYSL 609
L+I TDQD DGSHI GL I I P+LL + +++ F TPI+K T + +FY+
Sbjct: 495 LVIFTDQDVDGSHISGLCIQLIMTLVPSLLEVFPDYIKRFATPILKITSGKHAGKTFYTD 554
Query: 610 PEFEEWKEETTNWHTYKIKYYK 631
E+ E+ ++ + +KYYK
Sbjct: 555 AEYREYTDKHPDSKNASVKYYK 576
Score = 89.4 bits (220), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 68/111 (61%), Gaps = 4/111 (3%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMK--PWY 716
++EP YIP+IP+VLVNGA GIGTGW +P +NP E++D KRM G + K PWY
Sbjct: 785 KVEPTVYIPVIPIVLVNGANGIGTGWKCDVPQYNPLEVIDACKRMANGGELSTSKWVPWY 844
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
+ G+++ D F G + + L +TEL +G+ T D+ +++ +L+
Sbjct: 845 VGYNGKMEETTDG-FNSIGTYEV-SGNTLTVTELPIGRATEDWIESIQSLI 893
>gi|347481998|gb|AEO97984.1| topoisomerase II [Emiliania huxleyi virus 84]
Length = 1103
Score = 213 bits (541), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 189/622 (30%), Positives = 289/622 (46%), Gaps = 66/622 (10%)
Query: 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFD 89
MS +K+ Q +Q +HIL RP Y+G VEP+ +M T +E+ VP L KI +
Sbjct: 1 MSDQKM-QVLTQHDHILARPGMYVGGVEPVEYNKEVMTM-TGPKHVKEMM-VPALLKIIE 57
Query: 90 EILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
E L NA D Q +P IK+T +Q ++I + N K V+E +VP
Sbjct: 58 EPLANASDASQNNPVAKNIKVTTDQRDSSIKIETNTKF--VIE------YVP-------- 101
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
D D + +T +N+ D+++ G++G G KL N+FS F V
Sbjct: 102 ------DGNDYSVA----LAVSRFMTGTNFGDDDESFKLGQHGLGIKLTNVFSKYFEVVV 151
Query: 210 SCSEYKKSFKQVWKDNMSKVTSPEIKSGS-KDDFTKITFTPDLTKFKMTS-LDKDMVDLI 267
K+S+ +W +NM V +K S K + ITF PDL F + L D+I
Sbjct: 152 HDPSTKQSYHGIWTNNMYTVEKSVVKKASHKTPYVSITFIPDLPYFGLRGPLTAGQWDII 211
Query: 268 TRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVK-LYTDRQDEDG-DPVKIIYENVNPRW 324
+ +D A + K V LNGEK+P K + Y++ + D D+ D V++ N R
Sbjct: 212 HSQVFDLAVTAPKHTTVHLNGEKIPFKGIKGYIQAVMGDSLDKICMDKVEV---NGTVRL 268
Query: 325 EVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK---NKDLGCTIIM 381
EVA+ + + + +VN TT+G H D I K I + KK N + +++
Sbjct: 269 EVAVTIARDHAESIVYVNGAHTTRGTIH-----DYIFKNIANALSKKHNINPSMLRGLLL 323
Query: 382 LFGNKFNNVKNNKL-QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDS--- 437
+ + + N + AK + V G Q FI L + S
Sbjct: 324 IVAEAW--IPNARFTSQAKEELYTPVSKYGFKWDLSQS------FIKSLAKTDLYTSVVN 375
Query: 438 ---QTKENMTLQKGSFGSTCVPKLEDANDAGTKNSI-DCTLILTEGDSAKSLAVSGLGVV 493
+ + G +P+ + A + D L++TEGDSAK LA G V
Sbjct: 376 LLHDKDDKKAQKDMKVGKNKIPQFAKYDPATKLFKVNDAELLITEGDSAKQLANVGRNAV 435
Query: 494 GRD-KYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGR 552
R G++PLRGKL+N ++ K + N EI+ L++ILG+ KKY + + L Y
Sbjct: 436 KRHANMGLYPLRGKLMNAGNSSLKALAANKEISELIQILGITPYKKY-DLASARALPYRH 494
Query: 553 LMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL--PFLEEFITPIIKATKAREE-LSFYSL 609
L+I TDQD DGSHI GL I I P+LL + +++ F TPI+K T + +FY+
Sbjct: 495 LVIFTDQDVDGSHISGLCIQLIMTLVPSLLEVFPDYIKRFATPILKITSGKHAGKTFYTD 554
Query: 610 PEFEEWKEETTNWHTYKIKYYK 631
E+ E+ ++ + +KYYK
Sbjct: 555 AEYREYTDKHPDSKNASVKYYK 576
Score = 89.4 bits (220), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 68/111 (61%), Gaps = 4/111 (3%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMK--PWY 716
++EP YIP+IP+VLVNGA GIGTGW +P +NP E++D KRM G + K PWY
Sbjct: 785 KVEPTVYIPVIPIVLVNGANGIGTGWKCDVPQYNPLEVIDACKRMANGGELSTSKWVPWY 844
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
+ G+++ D F G + + L +TEL +G+ T D+ +++ +L+
Sbjct: 845 VGYNGKMEETTDG-FNSIGTYEV-SGNTLTVTELPIGRATEDWIESIQSLI 893
>gi|347600614|gb|AEP15101.1| DNA topoisomerase [Emiliania huxleyi virus 88]
Length = 1103
Score = 212 bits (540), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 189/622 (30%), Positives = 289/622 (46%), Gaps = 66/622 (10%)
Query: 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFD 89
MS +K+ Q +Q +HIL RP Y+G VEP+ +M T +E+ VP L KI +
Sbjct: 1 MSDQKM-QVLTQHDHILARPGMYVGGVEPVEYNKEVMTM-TGPKHVKEMM-VPALLKIIE 57
Query: 90 EILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
E L NA D Q +P IK+T +Q ++I + N K V+E +VP
Sbjct: 58 EPLANASDASQNNPVAKNIKVTTDQRDSSIKIETNTKF--VIE------YVP-------- 101
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
D D + +T +N+ D+++ G++G G KL N+FS F V
Sbjct: 102 ------DGNDYSVA----LAVSRFMTGTNFGDDDESFKLGQHGLGIKLTNVFSKYFEVVV 151
Query: 210 SCSEYKKSFKQVWKDNMSKVTSPEIKSGS-KDDFTKITFTPDLTKFKMTS-LDKDMVDLI 267
K+S+ +W +NM V +K S K + ITF PDL F + L D+I
Sbjct: 152 HDPSTKQSYHGIWTNNMYTVEKSVVKKASHKTPYVSITFIPDLPYFGLRGPLTAGQWDII 211
Query: 268 TRRAYD-AAASTKDVKVFLNGEKLPVKNFQDYVK-LYTDRQDEDG-DPVKIIYENVNPRW 324
+ +D A + K V LNGEK+P K + Y++ + D D+ D V++ N R
Sbjct: 212 HSQVFDLAVIAPKHTTVHLNGEKIPFKGIKGYIQAVMGDSLDKICMDKVEV---NGTVRL 268
Query: 325 EVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK---NKDLGCTIIM 381
EVA+ + + + +VN TT+G H D I K I + KK N + +++
Sbjct: 269 EVAVTIARDHAESIVYVNGAHTTRGTIH-----DYIFKNIANALSKKHNINPSMLRGLLL 323
Query: 382 LFGNKFNNVKNNKL-QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDS--- 437
+ + + N + AK + V G Q FI L + S
Sbjct: 324 IVAEAW--IPNARFTSQAKEELYTPVSKYGFKWDLSQS------FIKSLAKTDLYTSVVN 375
Query: 438 ---QTKENMTLQKGSFGSTCVPKLEDANDAGTKNSI-DCTLILTEGDSAKSLAVSGLGVV 493
+ + G +P+ + A + D L++TEGDSAK LA G V
Sbjct: 376 LLHDKDDKKAQKDMKVGKNKIPQFAKYDPATKLFKVNDAELLITEGDSAKQLANVGRNAV 435
Query: 494 GRD-KYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGR 552
R G++PLRGKL+N ++ K + N EI+ L++ILG+ KKY + + L Y
Sbjct: 436 KRHANMGLYPLRGKLMNAGNSSLKALAANKEISELIQILGITPYKKY-DLASARALPYRH 494
Query: 553 LMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL--PFLEEFITPIIKATKAREE-LSFYSL 609
L+I TDQD DGSHI GL I I P+LL + +++ F TPI+K T + +FY+
Sbjct: 495 LVIFTDQDVDGSHISGLCIQLIMTLVPSLLEVFPDYIKRFATPILKITSGKHAGKTFYTD 554
Query: 610 PEFEEWKEETTNWHTYKIKYYK 631
E+ E+ ++ + +KYYK
Sbjct: 555 AEYREYTDKHPDSKNASVKYYK 576
Score = 89.4 bits (220), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 68/111 (61%), Gaps = 4/111 (3%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMK--PWY 716
++EP YIP+IP+VLVNGA GIGTGW +P +NP E++D KRM G + K PWY
Sbjct: 785 KVEPTVYIPVIPIVLVNGANGIGTGWKCDVPQYNPLEVIDACKRMANGGELSTSKWVPWY 844
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
+ G+++ D F G + + L +TEL +G+ T D+ +++ +L+
Sbjct: 845 VGYNGKMEETTDG-FNSIGTYEV-SGNTLTVTELPIGRATEDWIESIQSLI 893
>gi|347482390|gb|AEO98331.1| topoisomerase II [Emiliania huxleyi virus 203]
Length = 1103
Score = 211 bits (537), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 189/622 (30%), Positives = 289/622 (46%), Gaps = 66/622 (10%)
Query: 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFD 89
MS +K+ Q +Q +HIL RP Y+G VEP+ +M T +E+ VP L KI +
Sbjct: 1 MSDQKM-QVLTQHDHILARPGMYVGGVEPVEYNKEVMTM-TGPKHVKEMM-VPALLKIIE 57
Query: 90 EILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
E L NA D Q +P IK+T +Q ++I + N K V+E +VP
Sbjct: 58 EPLANASDASQNNPVAKNIKVTTDQRDSSIKIETNTKF--VIE------YVP-------- 101
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
D D + +T +N+ D+++ G++G G KL N+FS F V
Sbjct: 102 ------DGNDYSVA----LAVSRFMTGTNFGDDDESFKLGQHGLGIKLTNVFSKYFEVVV 151
Query: 210 SCSEYKKSFKQVWKDNMSKVTSPEIKSGS-KDDFTKITFTPDLTKFKMTS-LDKDMVDLI 267
K+S+ +W +NM V +K S K + ITF PDL F + L D+I
Sbjct: 152 HDPSTKQSYHGIWTNNMYTVEKSVVKKASHKTPYVSITFIPDLPYFGLRGPLTTGQWDII 211
Query: 268 TRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVK-LYTDRQDEDG-DPVKIIYENVNPRW 324
+ +D A + K V LNGEK+P K + Y++ + D D+ D V++ N R
Sbjct: 212 HSQVFDLAVTAPKHTTVHLNGEKIPFKGIKGYIQAVMGDSLDKICMDKVEV---NGMVRL 268
Query: 325 EVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK---NKDLGCTIIM 381
EVA+ + + + +VN TT+G H D I K I + KK N + +++
Sbjct: 269 EVAVTIARDHAESIVYVNGAHTTRGTIH-----DYIFKNIANALSKKHNINPSMLRGLLL 323
Query: 382 LFGNKFNNVKNNKL-QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDS--- 437
+ + + N + AK + V G Q FI L + S
Sbjct: 324 IVAEAW--IPNARFTSQAKEELYTPVSKYGFKWDLSQS------FIKSLAKTDLYTSVVN 375
Query: 438 ---QTKENMTLQKGSFGSTCVPKLEDANDAGTKNSI-DCTLILTEGDSAKSLAVSGLGVV 493
+ + G +P+ + A + D L++TEGDSAK LA G V
Sbjct: 376 LLHDKDDKKAQKDMKVGKNKIPQFAKYDPATKLFKVNDAELLITEGDSAKQLANVGRNAV 435
Query: 494 GRD-KYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGR 552
R G++PLRGKL+N ++ K + N EI+ L++ILG+ KKY + + L Y
Sbjct: 436 KRHANMGLYPLRGKLMNAGNSSLKALAANKEISELIQILGITPYKKY-DLASARALPYRH 494
Query: 553 LMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL--PFLEEFITPIIKATKAREE-LSFYSL 609
L+I TDQD DGSHI GL I I P+LL + +++ F TPI+K T + +FY+
Sbjct: 495 LVIFTDQDVDGSHISGLCIQLIMTLVPSLLEVFPDYIKRFATPILKITSGKHAGKTFYTD 554
Query: 610 PEFEEWKEETTNWHTYKIKYYK 631
E+ E+ ++ + +KYYK
Sbjct: 555 AEYREYIDKHPDSKNAAVKYYK 576
Score = 87.8 bits (216), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 67/111 (60%), Gaps = 4/111 (3%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMK--PWY 716
++EP YIP+IP+VLVNGA GIGTGW +P +NP E++D KRM G + K PWY
Sbjct: 785 KVEPTVYIPVIPIVLVNGANGIGTGWKCDVPQYNPLEVIDACKRMANGGELSTSKWVPWY 844
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
+ G+++ D F G + + L +TEL +G+ T D+ +++ L+
Sbjct: 845 VGYNGKMEETTDG-FNSIGTYEV-SGNTLTVTELPIGRATEDWIESIQHLI 893
>gi|347600951|gb|AEP15437.1| DNA topoisomerase II [Emiliania huxleyi virus 207]
gi|347601587|gb|AEP16072.1| DNA topoisomerase II [Emiliania huxleyi virus 208]
gi|357973017|gb|AET98290.1| DNA topoisomerase II [Emiliania huxleyi virus 201]
Length = 1103
Score = 211 bits (536), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 189/622 (30%), Positives = 289/622 (46%), Gaps = 66/622 (10%)
Query: 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFD 89
MS +K+ Q +Q +HIL RP Y+G VEP+ +M T +E+ VP L KI +
Sbjct: 1 MSDQKM-QVLTQHDHILARPGMYVGGVEPVEYNKEVMTM-TGPKHVKEMM-VPALLKIIE 57
Query: 90 EILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
E L NA D Q +P IK+T +Q ++I + N K V+E +VP
Sbjct: 58 EPLANASDASQNNPVAKNIKVTTDQRDSSIKIETNTKF--VIE------YVP-------- 101
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
D D + +T +N+ D+++ G++G G KL N+FS F V
Sbjct: 102 ------DGNDYSVA----LAVSRFMTGTNFGDDDESFKLGQHGLGIKLTNVFSKYFEVVV 151
Query: 210 SCSEYKKSFKQVWKDNMSKVTSPEIKSGS-KDDFTKITFTPDLTKFKMTS-LDKDMVDLI 267
K+S+ +W +NM V +K S K + ITF PDL F + L D+I
Sbjct: 152 HDPSTKQSYHGIWTNNMYTVEKSVVKKASHKTPYVSITFIPDLPYFGLRGPLTTGQWDII 211
Query: 268 TRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVK-LYTDRQDEDG-DPVKIIYENVNPRW 324
+ +D A + K V LNGEK+P K + Y++ + D D+ D V++ N R
Sbjct: 212 HSQVFDLAVTAPKHTTVHLNGEKIPFKGIKGYIQAVMGDSLDKICMDKVEV---NGMVRL 268
Query: 325 EVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK---NKDLGCTIIM 381
EVA+ + + + +VN TT+G H D I K I + KK N + +++
Sbjct: 269 EVAVTIARDHAESIVYVNGAHTTRGTIH-----DYIFKNIANALSKKHNINPSMLRGLLL 323
Query: 382 LFGNKFNNVKNNKL-QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDS--- 437
+ + + N + AK + V G Q FI L + S
Sbjct: 324 IVAEAW--IPNARFTSQAKEELYTPVSKYGFKWDLSQS------FIKSLAKTDLYTSVVN 375
Query: 438 ---QTKENMTLQKGSFGSTCVPKLEDANDAGTKNSI-DCTLILTEGDSAKSLAVSGLGVV 493
+ + G +P+ + A + D L++TEGDSAK LA G V
Sbjct: 376 LLHDKDDKKAQKDMKVGKNKIPQFAKYDPATKLFKVNDAELLITEGDSAKQLANVGRNAV 435
Query: 494 GRD-KYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGR 552
R G++PLRGKL+N ++ K + N EI+ L++ILG+ KKY + + L Y
Sbjct: 436 KRHANMGLYPLRGKLMNAGNSSLKALAANKEISELIQILGITPYKKY-DLASARALPYRH 494
Query: 553 LMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL--PFLEEFITPIIKATKAREE-LSFYSL 609
L+I TDQD DGSHI GL I I P+LL + +++ F TPI+K T + +FY+
Sbjct: 495 LVIFTDQDVDGSHISGLCIQLIMTLVPSLLEVFPDYIKRFATPILKITSGKHAGKTFYTD 554
Query: 610 PEFEEWKEETTNWHTYKIKYYK 631
E+ E+ ++ + +KYYK
Sbjct: 555 AEYREYIDKHPDSKNAAVKYYK 576
Score = 87.8 bits (216), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 67/111 (60%), Gaps = 4/111 (3%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMK--PWY 716
++EP YIP+IP+VLVNGA GIGTGW +P +NP E++D KRM G + K PWY
Sbjct: 785 KVEPTVYIPVIPIVLVNGANGIGTGWKCDVPQYNPLEVIDACKRMANGGELSTSKWVPWY 844
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
+ G+++ D F G + + L +TEL +G+ T D+ +++ L+
Sbjct: 845 VGYNGKMEETTDG-FNSIGTYEV-SGNTLTVTELPIGRATEDWIESIQHLI 893
>gi|339242875|ref|XP_003377363.1| putative BRCA1 domain protein [Trichinella spiralis]
gi|316973842|gb|EFV57392.1| putative BRCA1 domain protein [Trichinella spiralis]
Length = 766
Score = 209 bits (533), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 166/310 (53%), Gaps = 43/310 (13%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEM+VD +L + PLQFAS++RE I K TGCT S G G+NKL ARLATK
Sbjct: 341 LEAVSCDEMFVDLKELCLNTGVRPLQFASFIREEIFKTTGCTASVGIGTNKLVARLATKV 400
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKPNGQF + +S FM ++DLPGVG + KL+ TC DL + L +LQ +
Sbjct: 401 AKPNGQFQVLKAEVSQFMKATKVADLPGVGVHIWQKLSERNIFTCEDLLQVDLGQLQRDF 460
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
G K Y+ G DD L E RKS+S VNYGIRF ++ FL++ + E+ KR+
Sbjct: 461 GKKTATAFYQKALGRDDSCLKAEIDRKSISCNVNYGIRFNTLKDAHGFLEKQSEELAKRM 520
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVR 2138
+ +++ K ITLKLM+R+ EA E K++GHG+C+ ++
Sbjct: 521 VDNQVEAKHITLKLMIRAPEASVETKKYMGHGICNTVS---------------------- 558
Query: 2139 SAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQ 2198
H V +L Y S A+ I KEVL + + ++RGI +
Sbjct: 559 -------------HSV--------ALANYTSDANSIAKEVLNLFKQFNATVSDIRGIALS 597
Query: 2199 VSKLEHQSKT 2208
V KL++ +T
Sbjct: 598 VKKLKNLQQT 607
Score = 117 bits (292), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 107/205 (52%), Gaps = 30/205 (14%)
Query: 1542 DFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVF-----RGIEAIRKWKTSLGITED 1596
++ FY SRLH +ST K +V +L+ F I +I K
Sbjct: 172 NYFETFYKHSRLHFISTTAQKMKSFVQQLQTCQVDTFDENRQELINSILK---------- 221
Query: 1597 EDLEETFSDNPSPS-EPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVRE 1655
+E S P+ + E + IMH+DMDCFFVS ++++P L+ +PVAVAH +
Sbjct: 222 --MEPCCSSTPTDTQEQQSYIMHLDMDCFFVSASLQNYPLLRGKPVAVAHSNHS------ 273
Query: 1656 GVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYC 1715
D+ E D + + + R G+ NGM +G AL+ CPNLK + YDFE Y E+S
Sbjct: 274 --DQAVELDSWAE--IASCNYEARMCGVRNGMRLGSALELCPNLKTISYDFERYAEISQT 329
Query: 1716 LYNLIASLTLNIEAVSLYTNESFLN 1740
+Y+LIA T ++EAVS +E F++
Sbjct: 330 IYSLIAKYTRDLEAVS--CDEMFVD 352
Score = 115 bits (287), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 91/146 (62%), Gaps = 15/146 (10%)
Query: 1321 YMEAKKRKLEEQFE-LEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALM 1379
YM +KK KL +QFE + S+ + IF G++++VNGYT P A++LK L+
Sbjct: 21 YMSSKKEKLAKQFEESDFQSEPKKNIFAGISVYVNGYTD-----------PPADQLKRLI 69
Query: 1380 MLHGGIYHHYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYLL 1439
+ +GG Y Y+S + TH+IAS LPH KIKKL +KI+KP+WI+DSI+AG+LL Y L
Sbjct: 70 LEYGGKYDLYQSMKITHVIASVLPHVKIKKLVGSEKIMKPDWILDSIAAGRLLPENDYRL 129
Query: 1440 YTG---TDAKPLTKLLQKSYFENTEA 1462
Y G D K + L+ K E+ +A
Sbjct: 130 YFGGSNLDGKIKSDLVMKPGAEDLDA 155
>gi|448926664|gb|AGE50240.1| DNA topoisomerase II [Acanthocystis turfacea Chlorella virus
Canal-1]
Length = 1058
Score = 208 bits (530), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 119/265 (44%), Positives = 162/265 (61%), Gaps = 47/265 (17%)
Query: 411 MALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ------------------------ 446
+ +KP VKN +++F+N +VNP+F SQTK+ +T +
Sbjct: 299 VIVKPAVVKNKLFVFVNARVVNPSFSSQTKDILTSKNVKCSPSAAFLKKAVSAVLDDVIA 358
Query: 447 --------------KGSFGS-----TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAV 487
K + G+ T + KL DA AGTK+S CTLILTEGDSA +LA
Sbjct: 359 ETNVRESLVEMKNLKKTDGAKKVRLTGIKKLTDAAWAGTKHSGMCTLILTEGDSAATLAT 418
Query: 488 SGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKT 547
+GL VVGR++YG+FPLRGKLLN R+A+ I NAEI + +ILGL+ Y +D +
Sbjct: 419 AGLAVVGRERYGIFPLRGKLLNARDASVSSITNNAEITAIKQILGLRNGTNY---KDASS 475
Query: 548 LRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSF 606
LRYG +MIM+DQD DGSHI GL++NF H +P+LL +P FL+ F+TPI+ A K + + F
Sbjct: 476 LRYGSVMIMSDQDVDGSHIAGLVLNFFHAQFPSLLEIPGFLKRFVTPIVVAKKGTKMVEF 535
Query: 607 YSLPEFEEWKEETTNWHTYKIKYYK 631
YS+P+FEEWK T + T+K KYYK
Sbjct: 536 YSIPDFEEWKSSTPDVSTWKTKYYK 560
Score = 207 bits (528), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 119/321 (37%), Positives = 182/321 (56%), Gaps = 47/321 (14%)
Query: 36 YQKKSQLEHILLRPDTYIGSV--EPITETMWLMNRETNHMERREITYVPGLYKIFDEILV 93
Y K SQ +HIL R DTY+GSV E E+++ + + ++ ++Y P KIFDEIL
Sbjct: 5 YVKLSQRDHILHRSDTYVGSVAKEAREESVY----TGDAIVKKSVSYSPAFLKIFDEILT 60
Query: 94 NACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSN 153
N+ D R M +K+T+ + + ++++N+G IP+ +H DE +VP +IF
Sbjct: 61 NSADCFNRGAPMTTLKVTI--DADHVTIFNDGCSIPIEKH-DEGCYVPELIF-------- 109
Query: 154 YNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSE 213
GHLLT N++D +++ GRNGYG+KL NIFS KF VE
Sbjct: 110 -----------------GHLLTGENFDDTQERTGAGRNGYGSKLTNIFSKKFDVEIFDGA 152
Query: 214 YKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYD 273
+K + Q W DNM+ + P++ SK TF PD +F M+S+D+D ++ RR YD
Sbjct: 153 HK--YIQSWSDNMTNASKPKVTKSSKPGSITTTFYPDFERFGMSSIDEDTRSVLVRRVYD 210
Query: 274 AAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDR 333
AA VK+FL+G++L VK +DY ++YT+ K ++E + W++ + PSD
Sbjct: 211 MAAVLTKVKIFLDGKRLDVKGAKDYFEMYTN--------AKPVFETADG-WDIGVCPSDE 261
Query: 334 GFQQVSFVNSIATTKGGRHVD 354
F+ VSFVN+ ++T+GG HVD
Sbjct: 262 -FRSVSFVNA-SSTRGGTHVD 280
Score = 121 bits (304), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 75/109 (68%), Gaps = 1/109 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEPE+Y+P IP +LVNGA GIGTG+ T IP++NP++IVDN+KR+I G+ PM PWYK
Sbjct: 768 KIEPEYYVPTIPFLLVNGANGIGTGFSTNIPSYNPKDIVDNVKRLIDGKPMTPMTPWYKG 827
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
FKG I F +G I + ++EL VG WT DYK+ ++TL+
Sbjct: 828 FKGAIKETSPGVFTCHGVYEI-KGKTVTVSELPVGTWTNDYKEFIETLV 875
>gi|339261258|ref|XP_003367996.1| ImpB/MucB/SamB family protein [Trichinella spiralis]
gi|316962015|gb|EFV48491.1| ImpB/MucB/SamB family protein [Trichinella spiralis]
Length = 381
Score = 206 bits (524), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 143/226 (63%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEM+VD +L + PLQFAS++RE I K TGCT S G G+NKL ARLATK
Sbjct: 120 LEAVSCDEMFVDLKELCLNTGVRPLQFASFIREEIFKTTGCTASVGIGTNKLVARLATKV 179
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKPNGQF + +S FM ++DLPGVG + KL+ TC DL + L +LQ +
Sbjct: 180 AKPNGQFQVLKAEVSQFMKATKVADLPGVGVHIWQKLSERNIFTCEDLLQVDLGQLQRDF 239
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
G K LY+ G DD L E RKS+S VNYGIRF ++ FL++ + E+ KR+
Sbjct: 240 GKKTATALYQKALGRDDSCLKAEIDRKSISCNVNYGIRFNTLKDAHGFLEKQSEELAKRM 299
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIY 2124
+ +++ K ITLKLM+R+ EA E K++GHG+C+ ++ S +L Y
Sbjct: 300 VDNQVEAKHITLKLMIRAPEASVETKKYMGHGICNTVSHSVALANY 345
Score = 104 bits (260), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 85/143 (59%), Gaps = 13/143 (9%)
Query: 1599 LEETFSDNPSPS-EPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGV 1657
+E S P+ + E + IMH+DMDCFFVS ++++P L+ +PVAVAH +
Sbjct: 1 MEPCCSSTPTDTQEQQSYIMHLDMDCFFVSASLQNYPLLRGKPVAVAHSNHS-------- 52
Query: 1658 DRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLY 1717
D+ E D + + + R G+ NGM +G AL+ CPNLK + YDFE Y E+S +Y
Sbjct: 53 DQAVELDSWAE--IASCNYEARMCGVRNGMRLGSALELCPNLKTISYDFERYAEISQTIY 110
Query: 1718 NLIASLTLNIEAVSLYTNESFLN 1740
+LIA T ++EAVS +E F++
Sbjct: 111 SLIAKYTRDLEAVS--CDEMFVD 131
>gi|356927887|gb|AET42677.1| DNA topoisomerase II [Emiliania huxleyi virus 202]
Length = 1103
Score = 203 bits (517), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 190/624 (30%), Positives = 283/624 (45%), Gaps = 75/624 (12%)
Query: 33 EKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHM---ERREITYVPGLYKIFD 89
+K Q +Q +HIL RP Y+G VEP+ N+E M +R + P L KI +
Sbjct: 3 DKKLQVLTQHDHILKRPGMYVGGVEPVE-----YNKEVMTMAGPKRVKEMMTPALLKIIE 57
Query: 90 EILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
E L NA D Q DP IK+T + ++I + N K K E ++P
Sbjct: 58 EPLANASDASQNDPGSKNIKVTTDPRDSSIKIETNTK------FKIE--YIP-------- 101
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
D D + +T +N+ D+E+ G++G G K N+FS F V
Sbjct: 102 ------DGNDYSVA----LAVSRFMTGTNFGDDEESFKLGQHGIGLKATNVFSKYFEVIV 151
Query: 210 SCSEYKKSFKQVWKDNMSKVTSPEIK-SGSKDDFTKITFTPDLTKFKMTS-LDKDMVDLI 267
K+S+ +W +NM V +K S K + ITF PDL F + L DLI
Sbjct: 152 HDPSTKQSYHGIWTNNMYTVEKSVVKKSPHKTPYVSITFIPDLPYFGLRGPLTPGQWDLI 211
Query: 268 TRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDED--GDPVKIIYENVNPRW 324
+ +D A + K V LNGEK+P K + YV+ E D V++ N R
Sbjct: 212 HSQVFDLAVTAPKHTSVHLNGEKIPFKGIKGYVQAIMGDSLEKICMDKVEV---NGTLRL 268
Query: 325 EVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK---NKDLGCTIIM 381
EVA+ + + + +VN TT+G H D I K I + KK N + +++
Sbjct: 269 EVAVTVARDHAESIVYVNGAHTTRGTIH-----DYIFKNIASALSKKHNINPGMLKGLLL 323
Query: 382 LFGNKFNNVKNNKL-QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCL--------IVN 432
+ + + N + AK + V G + + FI L +VN
Sbjct: 324 IVAEAW--IPNARFTSQAKEELYTPVSKYGFKWELSKS------FIQALAKTDLYTSVVN 375
Query: 433 PTFDSQTKENMTLQKGSFGSTCVPKLEDANDAGTKNSI-DCTLILTEGDSAKSLAVSGLG 491
D K+ K G +P+ + A + D L++TEGDSAK LA G
Sbjct: 376 LLQDKDDKKAQKDMK--VGKNKIPQFAKYDPATKLFKVNDAELLVTEGDSAKQLANVGRN 433
Query: 492 VVGRD-KYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRY 550
V R G++PLRGKL+N ++ K + N EI+ L++ILG+ KKY + + L Y
Sbjct: 434 AVKRHANMGLYPLRGKLMNAGNSSLKALAANKEISELIQILGITPYKKY-DLASARALPY 492
Query: 551 GRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL--PFLEEFITPIIKATKAREE-LSFY 607
L++ TDQD DGSHI GL I I P+LL + +++ F TPI+K T + SFY
Sbjct: 493 RHLVLFTDQDVDGSHISGLCIQLIMTLVPSLLEVFPDYIKRFATPILKITSGKHSGKSFY 552
Query: 608 SLPEFEEWKEETTNWHTYKIKYYK 631
+ E+ E+ ++ +KYYK
Sbjct: 553 TDAEYREFIKKHPEAKNASVKYYK 576
Score = 88.6 bits (218), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 67/116 (57%), Gaps = 14/116 (12%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMK--PWY 716
++EP YIP+IP+VLVNGA GIGTGW +P +NP E++D KRM G + K PWY
Sbjct: 785 KVEPTVYIPVIPIVLVNGANGIGTGWKCDVPQYNPLEVIDACKRMANGGELSTAKWVPWY 844
Query: 717 KNFKGEIDYCGD-----SRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
+ G+++ D + VNG + + I EL +GK T D+ +++ L+
Sbjct: 845 VGYNGKMEETTDGFNSIGTYEVNG-------NTITINELPIGKATEDWIESIQDLI 893
>gi|33333786|gb|AAQ11994.1| topoisomerase II [Fusarium avenaceum]
Length = 241
Score = 203 bits (516), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 119/279 (42%), Positives = 146/279 (52%), Gaps = 82/279 (29%)
Query: 321 NPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTII 380
+PRWEV A SD FQQVSFVNSIATT GG HV+ + D + K ++EV+ KK K
Sbjct: 1 HPRWEVGFAVSDGTFQQVSFVNSIATTSGGTHVNYIADQVTKHLLEVLNKKRK------- 53
Query: 381 MLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTK 440
G +LK ++NHI+IFINC I NP F SQTK
Sbjct: 54 -----------------------------GHSLKQNHLRNHIFIFINCYINNPAFTSQTK 84
Query: 441 ENMTLQKGSFGSTCV-------------------------------------------PK 457
E MT + FGS C K
Sbjct: 85 EQMTTKPSQFGSKCSLGDDFLKKIAKSDALQNILDFAEKKADKMLAKGDGSKRSRVNNAK 144
Query: 458 LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQ 517
L +AN AGT+ +CTLILTEGDSAK LAVSG ++ D+ GVFPLRGKLLNVR+A+ +Q
Sbjct: 145 LVEANFAGTRRGHECTLILTEGDSAKGLAVSGRAILDPDRIGVFPLRGKLLNVRDASTEQ 204
Query: 518 ILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIM 556
I +NAEI+N+ + LGL++ YT D K LRYG LMIM
Sbjct: 205 IAKNAEISNIKQFLGLKHKATYT---DTKNLRYGHLMIM 240
>gi|33333792|gb|AAQ11997.1| topoisomerase II [Fusarium sporotrichioides]
Length = 241
Score = 201 bits (512), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 118/280 (42%), Positives = 143/280 (51%), Gaps = 82/280 (29%)
Query: 321 NPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTII 380
+PRWEV A SD FQQVSFVNSIATT GG HV+ + D I K ++ + KK K
Sbjct: 1 HPRWEVGFAVSDGTFQQVSFVNSIATTAGGTHVNYIADQITKSLLNALNKKRK------- 53
Query: 381 MLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTK 440
G LK ++NHI++F+NC I NPTF SQTK
Sbjct: 54 -----------------------------GHTLKQNHLRNHIFVFVNCFIDNPTFSSQTK 84
Query: 441 ENMTLQKGSFGSTCV-------------------------------------------PK 457
E MTL+ FGS CV K
Sbjct: 85 EQMTLKASQFGSKCVLGDDFLKKVAKSDAIQNILDFAEKKADKMMAKSDGNKRSRVNNAK 144
Query: 458 LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQ 517
L +AN AGT+ +CTLILTEGDSAK LAVSG ++ D+ GVFPLRGKLLNVR+A+ Q
Sbjct: 145 LVEANFAGTRRGHECTLILTEGDSAKGLAVSGRAILDPDRIGVFPLRGKLLNVRDASPDQ 204
Query: 518 ILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMT 557
I +N EI N+ + LGL++ YT D K LRYG LMIM
Sbjct: 205 IAKNQEIQNIKQFLGLKHKAPYT---DTKNLRYGHLMIMA 241
>gi|37778804|gb|AAP31848.1| topoisomerase II [Fusarium lateritium]
Length = 241
Score = 200 bits (509), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 116/279 (41%), Positives = 145/279 (51%), Gaps = 82/279 (29%)
Query: 321 NPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTII 380
+PRWEV A SD FQQVSFVNSIATT GG HV+ + D I +++ + KK K
Sbjct: 1 HPRWEVGFAVSDGTFQQVSFVNSIATTSGGTHVNYIADQITASLLKTINKKRK------- 53
Query: 381 MLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTK 440
G LK ++NHI+IF+NC I NP+F+SQTK
Sbjct: 54 -----------------------------GHTLKQSHLRNHIFIFVNCYINNPSFNSQTK 84
Query: 441 ENMTLQKGSFGSTCV-------------------------------------------PK 457
E MT + +FGS C K
Sbjct: 85 EQMTTKVSTFGSKCALGEDFLKKIAKSDAIQNILDFAEKKADKMMAKGDGGRRSRVSNAK 144
Query: 458 LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQ 517
L +AN AGT+ +CTLILTEGDSAK LAVSG ++ D+ GVFPLRGKLLNVR+A+ Q
Sbjct: 145 LVEANFAGTRRGHECTLILTEGDSAKGLAVSGRAILDPDRIGVFPLRGKLLNVRDASVDQ 204
Query: 518 ILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIM 556
I +NAEI N+ + LGL++ + YT D K LRYG LMIM
Sbjct: 205 IAKNAEIQNIKQFLGLKHKQSYT---DTKNLRYGHLMIM 240
>gi|162532536|gb|ABY16680.1| topoisomerase II [Gibberella moniliformis]
Length = 243
Score = 200 bits (508), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 117/281 (41%), Positives = 146/281 (51%), Gaps = 82/281 (29%)
Query: 321 NPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTII 380
+PRWEV A SD FQQVSFVNSIATT GG HV+ + D + + +++ + KK K
Sbjct: 2 HPRWEVGFAVSDGTFQQVSFVNSIATTSGGTHVNYIADQVTEALLKALNKKRK------- 54
Query: 381 MLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTK 440
G ALK +KNHI+IF+NC I NP F SQTK
Sbjct: 55 -----------------------------GHALKQNHLKNHIFIFVNCYINNPAFTSQTK 85
Query: 441 ENMTLQKGSFGSTCV-------------------------------------------PK 457
E MT + FGS C K
Sbjct: 86 EQMTTKPSQFGSKCKLGEDFLKKIAKSDALQNILDFAEKKADKMLAKGDGNKRSRVNNAK 145
Query: 458 LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQ 517
L +AN AGT+ +CTLILTEGDSAK LAVSG ++ D+ GVFPLRGKLLNVR+A+ Q
Sbjct: 146 LVEANFAGTRRGHECTLILTEGDSAKGLAVSGRAILDPDRIGVFPLRGKLLNVRDASVDQ 205
Query: 518 ILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTD 558
I++NAEI N+ + LGL++ + YT D K LRYG LMIM +
Sbjct: 206 IMKNAEIQNIKQFLGLKHKQTYT---DTKNLRYGHLMIMAE 243
>gi|33333794|gb|AAQ11998.1| topoisomerase II [Fusarium oxysporum f. sp. melonis]
gi|162532546|gb|ABY16684.1| topoisomerase II [Fusarium oxysporum f. sp. lycopersici]
Length = 241
Score = 199 bits (507), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 117/280 (41%), Positives = 145/280 (51%), Gaps = 82/280 (29%)
Query: 321 NPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTII 380
+PRWEV A SD FQQVSFVNSIATT GG HV+ + D + + +++ + KK K
Sbjct: 1 HPRWEVGFAVSDGTFQQVSFVNSIATTSGGTHVNYIADQVTEALLKALNKKRK------- 53
Query: 381 MLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTK 440
G ALK +KNHI+IF+NC I NP F SQTK
Sbjct: 54 -----------------------------GHALKQSHLKNHIFIFVNCYINNPAFTSQTK 84
Query: 441 ENMTLQKGSFGSTCV-------------------------------------------PK 457
E MT + FGS C K
Sbjct: 85 EQMTTKPSQFGSKCKLGEDFLKKIAKSDALQNILDFAEKKADKMLAKGDGNKRSRVNNAK 144
Query: 458 LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQ 517
L +AN AGT+ +CTLILTEGDSAK LAVSG ++ D+ GVFPLRGKLLNVR+A+ Q
Sbjct: 145 LVEANFAGTRRGHECTLILTEGDSAKGLAVSGRAILDPDRIGVFPLRGKLLNVRDASVDQ 204
Query: 518 ILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMT 557
I++NAEI N+ + LGL++ + YT D K LRYG LMIM
Sbjct: 205 IMKNAEIQNIKQFLGLKHKQTYT---DTKNLRYGHLMIMA 241
>gi|162532552|gb|ABY16687.1| topoisomerase II [Fusarium proliferatum]
Length = 245
Score = 199 bits (507), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 117/281 (41%), Positives = 146/281 (51%), Gaps = 82/281 (29%)
Query: 321 NPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTII 380
+PRWEV A SD FQQVSFVNSIATT GG HV+ + D + + +++ + KK K
Sbjct: 1 HPRWEVGFAVSDGTFQQVSFVNSIATTSGGTHVNYIADQVTEALLKALNKKRK------- 53
Query: 381 MLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTK 440
G ALK +KNHI+IF+NC I NP F SQTK
Sbjct: 54 -----------------------------GHALKQNHLKNHIFIFVNCYINNPAFTSQTK 84
Query: 441 ENMTLQKGSFGSTCV-------------------------------------------PK 457
E MT + FGS C K
Sbjct: 85 EQMTTKPSQFGSKCKLGEDFLKKIAKSDALQNILDFAEKKADKMLAKGDGNKRSRVNNAK 144
Query: 458 LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQ 517
L +AN AGT+ +CTLILTEGDSAK LAVSG ++ D+ GVFPLRGKLLNVR+A+ Q
Sbjct: 145 LVEANFAGTRRGHECTLILTEGDSAKGLAVSGRAILDPDRIGVFPLRGKLLNVRDASVDQ 204
Query: 518 ILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTD 558
I++NAEI N+ + LGL++ + YT D K LRYG LMIM +
Sbjct: 205 IMKNAEIQNIKQFLGLKHKQTYT---DTKNLRYGHLMIMAN 242
>gi|67526903|ref|XP_661513.1| hypothetical protein AN3909.2 [Aspergillus nidulans FGSC A4]
gi|40740028|gb|EAA59218.1| hypothetical protein AN3909.2 [Aspergillus nidulans FGSC A4]
gi|259481519|tpe|CBF75115.1| TPA: deoxycytidyl transferase (Eurofung) [Aspergillus nidulans FGSC
A4]
Length = 1139
Score = 198 bits (504), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 132/374 (35%), Positives = 185/374 (49%), Gaps = 73/374 (19%)
Query: 1898 IVSAVSCDEMYVDCSQLLQELSLT----------------PLQFASYLRETIAKETGCTC 1941
+V +VS DE VD + + E + + A LR I +ETGC
Sbjct: 434 LVQSVSIDEALVDITTICLEAGGSEGKGVSEGSIYREQAKADEVAEQLRAAIKRETGCAV 493
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N LQA++A +KAKP GQF L P + DF+ +P+ +LPGVG+SL KL LG +
Sbjct: 494 SVGIGGNILQAKVALRKAKPAGQFQLKPDAVLDFIGELPVQNLPGVGYSLSAKLEDLGVK 553
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++++S ++L + +G K G L + RG D E+ E RKSVSAEVN+GIRF
Sbjct: 554 IVKDIRDLSREKLSSSLGPKTGAKLADYARGIDRTEVGNEVTRKSVSAEVNWGIRFVTQD 613
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ E F++ L E+ +RL E MKG+ +TLK+M R+ +AP EA K LGHG CD KS L
Sbjct: 614 QAEDFMRSLCEELHRRLVENLMKGQQLTLKVMRRALDAPLEAVKHLGHGKCDVFNKSVIL 673
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
I A+ LG KE + +
Sbjct: 674 GIAT-------------------NAADVLG------------------------KEAIAM 690
Query: 2182 VNKLKVDPVELRGIGIQVSKLEHQSKT----------LATIDTFFTNKGKP---PDQLNN 2228
+ L + P +LRG+G+Q++KLE T LA + + +P PD L++
Sbjct: 691 LRSLAISPGDLRGLGVQMTKLEPLKSTSEKSDGSQQQLAFKASTAPKRAQPIDDPDLLDS 750
Query: 2229 PRPGPSNSTITPGP 2242
PR G S S I GP
Sbjct: 751 PRKGESES-IRHGP 763
Score = 145 bits (366), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 125/462 (27%), Positives = 200/462 (43%), Gaps = 111/462 (24%)
Query: 1321 YMEAKKRKLEE---QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
YM KK KL+ A +D+ IF+ V VNGYT+ PS ++L
Sbjct: 40 YMRRKKTKLQNLDNDIRSSAAADNCPQIFRSVVACVNGYTQ-----------PSLQDLHK 88
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL--- 1432
L++ HGG + Y +T THIIAS+L K ++ + +++KP W+VDS++AG+LL
Sbjct: 89 LIVRHGGGFLQYLDGKTSATHIIASSLTPKKREEFR-RYRVVKPAWVVDSVNAGRLLPWD 147
Query: 1433 --------DHKKYLLYTG-----------------TDAKPLTKLLQKSYFENTEAPCCSK 1467
+K L + G + A T N +P +
Sbjct: 148 LYRVLDEGQGQKVLNFEGGRIVSQANSHRTNYKDESRASRYTSQWPSERATNDRSPDPPE 207
Query: 1468 SLVETSSHTSTVSD--------SVDNTEESKSEAV------NSEESKSEAANPIESKQTV 1513
+ S+ +T SD S+D +S + + P E +
Sbjct: 208 TPASKQSNDATQSDYGDFPSFSSLDQPAQSATSPSSPPPHGQGDRLGEPVITPGEPAENQ 267
Query: 1514 KTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFK-QYVNELRE 1572
+T T++ P P+ ++ + N DFL ++Y +SRLHHLST + K Q ++ +E
Sbjct: 268 RTDMGT--TLSPQQPDPRMRNS-SVVNPDFLQQYYKESRLHHLSTWKAELKAQLQSKAQE 324
Query: 1573 KHDGVFRG--IEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGI 1630
K R + R++ IMH+D DCFF +V
Sbjct: 325 KARSQRRKKLVPGARRY----------------------------IMHVDFDCFFAAVST 356
Query: 1631 RHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVG 1690
HPEL+ +PVA+AHG G S++ + N + R G+ NGM++
Sbjct: 357 LKHPELEGKPVAIAHGTGTGSEI---------------ASCNYVA---RASGVKNGMWMK 398
Query: 1691 HALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSL 1732
AL+ CP+L+++PYDF Y+E S Y I + +++VS+
Sbjct: 399 GALQACPDLRVLPYDFPAYEEASRKFYRAILGIDGLVQSVSI 440
>gi|33333778|gb|AAQ11990.1| topoisomerase II [Gibberella pulicaris]
gi|162532548|gb|ABY16685.1| topoisomerase II [Gibberella pulicaris]
Length = 241
Score = 198 bits (503), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 117/280 (41%), Positives = 141/280 (50%), Gaps = 82/280 (29%)
Query: 321 NPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTII 380
+PRWEV A SD FQQVSFVNSIATT GG HV+ + D I K ++ + KK K
Sbjct: 1 HPRWEVGFAVSDGTFQQVSFVNSIATTAGGTHVNYIADQITKSLLNALNKKRK------- 53
Query: 381 MLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTK 440
G LK ++NHI++FINC I NP F SQTK
Sbjct: 54 -----------------------------GHTLKQNHLRNHIFVFINCYIDNPAFSSQTK 84
Query: 441 ENMTLQKGSFGSTCV-------------------------------------------PK 457
E MT + FGS CV K
Sbjct: 85 EQMTTKASQFGSKCVLGDDFLKKVAKSEAIQNILDFAEKKADKMMAKSDGNKRSRVNNAK 144
Query: 458 LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQ 517
L +AN AGT+ +CTLILTEGDSAK LAVSG ++ D+ GVFPLRGKLLNVR+A+ Q
Sbjct: 145 LVEANFAGTRRGHECTLILTEGDSAKGLAVSGRAILDPDRIGVFPLRGKLLNVRDASPDQ 204
Query: 518 ILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMT 557
I +N EI N+ + LGL++ YT D K LRYG LMIM
Sbjct: 205 IAKNQEIQNIKQFLGLKHKTSYT---DTKNLRYGHLMIMA 241
>gi|256078093|ref|XP_002575332.1| terminal deoxycytidyl transferase [Schistosoma mansoni]
gi|360045368|emb|CCD82916.1| putative terminal deoxycytidyl transferase rev1 [Schistosoma mansoni]
Length = 1001
Score = 198 bits (503), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 152/480 (31%), Positives = 231/480 (48%), Gaps = 87/480 (18%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKAL 1378
GGYM AK KLE+QF + S S +F GV+I+VNGYT P A L+ L
Sbjct: 18 GGYMRAKISKLEKQFSEQTESGS--SLFSGVSIYVNGYTD-----------PPALVLRDL 64
Query: 1379 MMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY 1437
+M HGG Y +Y S TH+IAS LP+ KI KL +K++ WI DSI AGKLL + Y
Sbjct: 65 IMRHGGRYQAYYSRSAVTHVIASRLPYGKINKLS-DEKLVTATWITDSIEAGKLLPWQNY 123
Query: 1438 LLY----TGTDAKPLTKL-------LQKSYFENTEAPCCSKSLV---------------- 1470
LY +GT K L + + E P + +
Sbjct: 124 QLYPTHRSGTGQKTLKIIPVIPVDETNSNKLEVVSLPHVTNTNNDPNTNVNTEIASCSTH 183
Query: 1471 --------ETSSHTSTVSDSVDNTEESKSEAVNSEESKSEAANP----IESKQTVKTK-- 1516
+ +H V + + SK++ + +K + +P I KQ + K
Sbjct: 184 QSSSSSDKQARAHQMRVDECLLLNHMSKADTYDGLNTKVQKNSPLKPPITLKQLLNNKLV 243
Query: 1517 ESKLETVN---------ISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYV 1567
+ L+T + I++ P ++ S + L FY++SRLHHLS+ V
Sbjct: 244 DDALQTTDPIKDKVPSSITSYTPIQQTSLKTSIDQKLATFYSRSRLHHLSSWAKDLHSLV 303
Query: 1568 NELRE--KHDGVFRGIEAIRKWKTSLGITEDE----DLEETF--SDNPS------PSEPE 1613
E+R+ +H+ G+E + + L ++ + +L + +NP+ P +P+
Sbjct: 304 EEMRKNPEHNCDL-GMEWYSQISSDLSLSTNNKKIIELHARYVNCNNPNSYPLSKPQKPQ 362
Query: 1614 PVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVRE--GVDRQAEFDIYRQRTM 1671
+I HIDMDCFFVSV +R+ PEL+D+P+A+ H K + V + ++ AE +
Sbjct: 363 -IIFHIDMDCFFVSVSLRNRPELEDKPIAITHAKSSRGSVNDIRSSNKHAE----SMSEV 417
Query: 1672 NRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
R G+ NGM +G A + CP+L ++PYDFE YK VS LY+ I+ T +I+AVS
Sbjct: 418 ASCSYTARHAGVKNGMLLGRAKQLCPDLIVLPYDFEAYKAVSELLYSTISRFTRDIQAVS 477
Score = 165 bits (417), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 120/425 (28%), Positives = 186/425 (43%), Gaps = 123/425 (28%)
Query: 1860 FLRRHVGKKESTVWAEAYQ------------EMLSCVQSAMKHKPSSESKIVSAVSCDEM 1907
+ RH G K + A Q E V + S ++ + AVSCDE+
Sbjct: 422 YTARHAGVKNGMLLGRAKQLCPDLIVLPYDFEAYKAVSELLYSTISRFTRDIQAVSCDEL 481
Query: 1908 YVDCSQLL-----QELS--------------LTPLQFASYLRETIAKETG-CTCSTGFGS 1947
Y DC++LL E+ + PL Y+RE + TG CT S GFG+
Sbjct: 482 YADCTELLIYSNENEIKPKLHDSNWEATYQIINPLILGGYIRELVRDITGGCTASIGFGT 541
Query: 1948 NKLQARLATKKAKPNGQF------------------------------------HLTPQI 1971
+KL ARLATKKAKPNGQ+ H ++
Sbjct: 542 SKLLARLATKKAKPNGQYWLLGRSGGACPKLDRQTKNESWRWYSSDENIEQLETHSECEL 601
Query: 1972 ISD---FMLNIPLSDLPGVGHSLLFKL-NSLGAQTCGDLQN-ISLKRLQNEVGNKNGLTL 2026
D ++ N+PL+++P +G SL K+ + A+TCG L + +S ++ + +G K G +
Sbjct: 602 TGDEYQWLCNLPLTEIPNIGRSLAGKIFQAFDAKTCGQLMSKVSHNQITSLLGKKTGNRV 661
Query: 2027 YKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMK-- 2084
Y CRG+D L FE + KSVSA +NYGIR + E+E ++ L E+ R+ +KM
Sbjct: 662 YMACRGKDLDSLQFEKEYKSVSASMNYGIRLSSRSELEALVQSLCEELSSRMRNIKMSSM 721
Query: 2085 -----GKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRS 2139
GK +T+KL +R AP + SK++GHG+C
Sbjct: 722 NEGCVGKSLTIKLYLRLPNAPVQTSKYMGHGLC--------------------------- 754
Query: 2140 AEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQV 2199
H + + + + A+ + + + V +L +P +LRGIG+QV
Sbjct: 755 --------SITNHTI--------QMTEHTADATVLYRYAVKTVYRLCPEPEDLRGIGLQV 798
Query: 2200 SKLEH 2204
+L+
Sbjct: 799 HQLQQ 803
Score = 43.9 bits (102), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 1808 LSSNVSLQEMRTMLREWMC-ESQPEPSDIEMFSEYLSNLVEE--RHLNPIVILLRFLRRH 1864
L +N +L E++ + +W+ E+ P+ D+++ ++YLS+LV + ++ILL L
Sbjct: 903 LFTNKTLTELQQIFGDWITSEAVPQNEDVQILTDYLSSLVNTNLERIRSVLILLDRLITK 962
Query: 1865 VGKKESTVWAEAYQEMLSCVQSAMKHKPS 1893
+ W +AYQ +L + ++K K S
Sbjct: 963 LAHPPDGSWRKAYQSILDTLTESIKEKYS 991
>gi|33333780|gb|AAQ11991.1| topoisomerase II [Fusarium venenatum]
gi|33333788|gb|AAQ11995.1| topoisomerase II [Fusarium poae]
Length = 241
Score = 198 bits (503), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 117/280 (41%), Positives = 141/280 (50%), Gaps = 82/280 (29%)
Query: 321 NPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTII 380
+PRWEV A SD FQQVSFVNSIATT GG HV+ + D I K ++ + KK K
Sbjct: 1 HPRWEVGFAVSDGTFQQVSFVNSIATTAGGTHVNYIADQITKSLLNALNKKRK------- 53
Query: 381 MLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTK 440
G LK ++NHI++FINC I NP F SQTK
Sbjct: 54 -----------------------------GHTLKQNHLRNHIFVFINCYIDNPAFSSQTK 84
Query: 441 ENMTLQKGSFGSTCV-------------------------------------------PK 457
E MT + FGS CV K
Sbjct: 85 EQMTTKASQFGSKCVLGDDFLKKVAKSDAIQNILDFAEKKADKMMAKSDGNKRSRVNNAK 144
Query: 458 LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQ 517
L +AN AGT+ +CTLILTEGDSAK LAVSG ++ D+ GVFPLRGKLLNVR+A+ Q
Sbjct: 145 LVEANFAGTRRGHECTLILTEGDSAKGLAVSGRAILDPDRIGVFPLRGKLLNVRDASPDQ 204
Query: 518 ILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMT 557
I +N EI N+ + LGL++ YT D K LRYG LMIM
Sbjct: 205 IAKNQEIQNIKQFLGLKHKTSYT---DTKNLRYGHLMIMA 241
>gi|33333790|gb|AAQ11996.1| topoisomerase II [Gibberella moniliformis]
Length = 241
Score = 197 bits (502), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 116/280 (41%), Positives = 145/280 (51%), Gaps = 82/280 (29%)
Query: 321 NPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTII 380
+PRWEV A SD FQQVSFVNSIATT GG HV+ + D + + +++ + KK K
Sbjct: 1 HPRWEVGFAVSDGTFQQVSFVNSIATTSGGTHVNYIADQVTEALLKALNKKRK------- 53
Query: 381 MLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTK 440
G ALK +KNHI+IF+NC I NP F SQTK
Sbjct: 54 -----------------------------GHALKQNHLKNHIFIFVNCYINNPAFTSQTK 84
Query: 441 ENMTLQKGSFGSTCV-------------------------------------------PK 457
E MT + FGS C K
Sbjct: 85 EQMTTKPSQFGSKCKLGEDFLKKIAKSDALQNILDFAEKKADKMLAKGDGNKRSRVNNAK 144
Query: 458 LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQ 517
L +AN AGT+ +CTLILTEGDSAK LAVSG ++ D+ GVFPLRGKLLNVR+A+ Q
Sbjct: 145 LVEANFAGTRRGHECTLILTEGDSAKGLAVSGRAILDPDRIGVFPLRGKLLNVRDASVDQ 204
Query: 518 ILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMT 557
I++NAEI N+ + LGL++ + YT D K L+YG LMIM
Sbjct: 205 IMKNAEIQNIKQFLGLKHKQTYT---DTKNLKYGHLMIMA 241
>gi|162532550|gb|ABY16686.1| topoisomerase II [Fusarium udum]
Length = 241
Score = 197 bits (502), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 116/280 (41%), Positives = 144/280 (51%), Gaps = 82/280 (29%)
Query: 321 NPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTII 380
+PRWEV A SD FQQVSFVNSIATT GG HV+ + D + + +++ + KK K
Sbjct: 1 HPRWEVGFAVSDGTFQQVSFVNSIATTSGGTHVNYIADQVTEALLKALNKKRK------- 53
Query: 381 MLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTK 440
G ALK +KNHI+IF+NC I NP F SQTK
Sbjct: 54 -----------------------------GHALKQNHLKNHIFIFVNCYINNPAFTSQTK 84
Query: 441 ENMTLQKGSFGSTCV-------------------------------------------PK 457
E MT + FGS C K
Sbjct: 85 EQMTTKPSQFGSKCKLGEDFLKKIAKSDALQNILDFAEKKADKMLAKGDGNKRSRVNNAK 144
Query: 458 LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQ 517
L +AN AGT+ +CTLILTEGDSAK LAVSG ++ D+ GVFPLRGKLLNVR+A+ Q
Sbjct: 145 LVEANFAGTRRGHECTLILTEGDSAKGLAVSGRAILDPDRIGVFPLRGKLLNVRDASVDQ 204
Query: 518 ILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMT 557
I++N EI N+ + LGL++ + YT D K LRYG LMIM
Sbjct: 205 IMKNTEIQNIKQFLGLKHKQTYT---DTKNLRYGHLMIMA 241
>gi|115398766|ref|XP_001214972.1| hypothetical protein ATEG_05794 [Aspergillus terreus NIH2624]
gi|114191855|gb|EAU33555.1| hypothetical protein ATEG_05794 [Aspergillus terreus NIH2624]
Length = 1164
Score = 197 bits (501), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 129/377 (34%), Positives = 188/377 (49%), Gaps = 76/377 (20%)
Query: 1898 IVSAVSCDEMYVDCSQLLQELSLT----------------PLQFASYLRETIAKETGCTC 1941
+V +VS DE VD + E T + A LR+++ +TGC
Sbjct: 473 VVQSVSIDEALVDITTQCHEAGGTDGRGISEGSIYREQARADEIAQNLRDSVKAKTGCAV 532
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N LQA++A +KAKP GQF L P + DF+ N+ + +LPGVG+SL K+ LG +
Sbjct: 533 SVGIGGNILQAKVALRKAKPAGQFQLKPDAVLDFIGNLSVQNLPGVGYSLATKMEELGVK 592
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ +S +RL + +G K G L+ + RG D E+ E RKSVSAEVN+GIRF N +
Sbjct: 593 LVKDIRELSRERLTSTLGPKTGAKLWDYARGIDRTEVGNEVMRKSVSAEVNWGIRFVNQE 652
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ + F+K L E+ +RL E +KGK +TLK+M RSA+AP E K LGHG CD KS L
Sbjct: 653 QADDFVKSLCAELHRRLVENLVKGKQLTLKVMRRSADAPLEPVKHLGHGKCDTFNKSVIL 712
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL-KEVLF 2180
GV + A+ +L KE +
Sbjct: 713 -------------------------------GVA-------------TNATDVLAKEAIS 728
Query: 2181 IVNKLKVDPVELRGIGIQVSKLE----HQSKTLATIDTFFTNKGKP----------PDQL 2226
++ L + P +LRG+G+Q++KLE ++++ K P PD L
Sbjct: 729 MLKGLAISPGDLRGLGVQMTKLEPLKPGPGGSVSSSQQQLNFKASPVRKSVEKHHDPDDL 788
Query: 2227 NNPRPGPSNSTITPGPS 2243
+P G ++S + GPS
Sbjct: 789 ESPHKGETDS-VRHGPS 804
Score = 105 bits (263), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 112/243 (46%), Gaps = 52/243 (21%)
Query: 1537 NASNEDFLGEFYNKSRLHHLSTMGSMFK-QYVNELREK---HDGVFRGIEAIRKWKTSLG 1592
+ +N +F+ +FY +SRLHHLST + K Q REK D + R++
Sbjct: 326 SVANPEFIQQFYRESRLHHLSTWKAELKAQLQASAREKSQAQDSRRKLAPGARRY----- 380
Query: 1593 ITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSK 1652
I+H+D DCFF +V HPEL +PVA+AHG G+ S+
Sbjct: 381 -----------------------ILHVDFDCFFAAVSSLKHPELDGKPVAIAHGTGSGSE 417
Query: 1653 VREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEV 1712
+ R G+ NGM++ AL++CP LK++PYDF Y++
Sbjct: 418 IAS------------------CNYPARARGVKNGMWMKGALQECPELKVLPYDFAAYEDA 459
Query: 1713 SYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLA 1772
S Y+ I S+ +++VS+ +E+ ++ + D + + REQ + +A
Sbjct: 460 SQKFYSSILSIDGVVQSVSI--DEALVDITTQCHEAGGTDGRGISEGSIYREQARADEIA 517
Query: 1773 QDI 1775
Q++
Sbjct: 518 QNL 520
Score = 71.2 bits (173), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 21/120 (17%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGG----IFQGVAIFVNGYTKHCMMLDAYYIVPSAEE 1374
G YM KK KL+ L+A S G IF+GV VNGYT+ PS ++
Sbjct: 38 GDYMRRKKLKLQN---LDAEIRSSAGDCPPIFRGVVAHVNGYTQ-----------PSLQD 83
Query: 1375 LKALMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL 1432
L L++ HGG + Y +T THIIAS+L K ++ + +I+KP W+V+SI AG+LL
Sbjct: 84 LHRLIVSHGGGFLQYLDGKTAATHIIASSLTPKKREEFR-RYRIVKPAWVVESIKAGRLL 142
>gi|162532539|gb|ABY16681.1| topoisomerase II [Fusarium chlamydosporum]
Length = 243
Score = 197 bits (500), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 116/281 (41%), Positives = 142/281 (50%), Gaps = 82/281 (29%)
Query: 321 NPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTII 380
+PRWEV A SD FQQVSFVNSIATT GG HV+ + D + K ++ + KK K
Sbjct: 2 HPRWEVGFAVSDGTFQQVSFVNSIATTSGGTHVNYIADQVTKSLLATLNKKRK------- 54
Query: 381 MLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTK 440
G LK ++NHI+IF+NC I NP F SQTK
Sbjct: 55 -----------------------------GHTLKQAHLRNHIFIFVNCYIDNPAFTSQTK 85
Query: 441 ENMTLQKGSFGSTCV-------------------------------------------PK 457
E MT + FGS CV K
Sbjct: 86 EQMTTKPSMFGSKCVLGDDFLKKVAKSDAIQNILDFAEKKADKMMAKSDGNKRSRVNNAK 145
Query: 458 LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQ 517
L +AN AGT+ +CTLILTEGDSAK LAVSG ++ D+ GVFPLRGKLLNVR+A+ Q
Sbjct: 146 LVEANFAGTRRGHECTLILTEGDSAKGLAVSGRAILDPDRIGVFPLRGKLLNVRDASPDQ 205
Query: 518 ILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTD 558
I +N EI N+ + LGL++ YT D K LRYG LMIM +
Sbjct: 206 IAKNQEIQNIKQFLGLKHKASYT---DTKNLRYGHLMIMAE 243
>gi|327348940|gb|EGE77797.1| DNA damage repair protein Mus42 [Ajellomyces dermatitidis ATCC 18188]
Length = 1171
Score = 197 bits (500), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 132/392 (33%), Positives = 192/392 (48%), Gaps = 77/392 (19%)
Query: 1898 IVSAVSCDEMYVDCSQL-----------LQELSLTPLQ-----FASYLRETIAKETGCTC 1941
IV +VS DE VD + + + E S+ Q A LR ++ + TGC
Sbjct: 464 IVQSVSIDEALVDITGVCLDAGGSDGRGISEGSIWREQEKADEIAQNLRNSVKERTGCNI 523
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N LQAR+A +KAKP GQF L P + DF+ + + DLPGV HSL KL LG
Sbjct: 524 SVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDFIGTLAVKDLPGVAHSLGAKLEELGVT 583
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++++S ++L + +G K G L+ RG D+ E+ + RKSVSAE+N+GIRF N
Sbjct: 584 FVKDIRDLSREKLTSSLGPKTGAKLWDFARGIDNTEVGVQAPRKSVSAEINWGIRFVNQA 643
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ E F++ L E+ +RL E +KGK +T+++M RSA+AP E K LGHG CD KS +L
Sbjct: 644 QAEEFVQSLCDELHRRLVENLVKGKQLTMRIMKRSADAPLEPVKHLGHGKCDTFNKSVNL 703
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL-KEVLF 2180
GV + AS I+ +E +
Sbjct: 704 -------------------------------GVA-------------TNASDIIGREAIT 719
Query: 2181 IVNKLKVDPVELRGIGIQVSKLE-----HQSKTLATIDTFFTNKGKP---------PDQL 2226
I+ K P +LRG+G+Q++KLE H + ++ P PD++
Sbjct: 720 ILRGFKFSPGDLRGLGVQMTKLEPVKQYHARELDSSQKQISFKPASPTRQRETPIDPDEI 779
Query: 2227 NNPRPGPSNSTITPGPSNSTLPPGPSNSTLPP 2258
N PR G + S P S PG ++++ P
Sbjct: 780 NTPRKGDTTSEYLPKSLQSA--PGLTDASQKP 809
Score = 158 bits (399), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 141/530 (26%), Positives = 233/530 (43%), Gaps = 129/530 (24%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G Y KK KL+ EL A+S IF+GV VNGYT+ PS ++L
Sbjct: 38 GDYFRRKKLKLQNLDAELRASSPQNPPIFRGVVAHVNGYTQ-----------PSLKDLHH 86
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL--- 1432
L++ HGG + Y +T THIIAS L K ++ + +I+KP W+V+S+ AG+LL
Sbjct: 87 LIVSHGGGFLQYLDGKTSATHIIASTLTPKKREEFR-KYRIVKPAWVVESVKAGRLLPWD 145
Query: 1433 --------DHKKYLLYTG-----TDAKPLTKLLQ-KSYFENTEAPCCSKSL--------- 1469
+K L++ G + P ++ + ++Y + SKSL
Sbjct: 146 SFRVVDEGQSQKVLMFGGDGQVQSQVNPQSRSYKDQTYTSWYTSQIKSKSLDNDDHMEIT 205
Query: 1470 --------VETSSHTSTVSDSVDNTEESKSEAVNSEESKS-------EAANPIESKQTVK 1514
++ + ST+ + + T + AV + +A S++T++
Sbjct: 206 GATSSAHGIDAGTPASTLHNELRGTHSDATMAVFPALDTTLDTGVVNQAITRSSSRETLE 265
Query: 1515 TKE--SKLETVN-ISAPKP------------------------QASSTKNAS--NEDFLG 1545
E ++ TV+ ++ PKP A +N+S N +F+
Sbjct: 266 DPEPPDEIGTVDQVTLPKPVSDKYKESDAHSSMTPEEYNAQLLSAPHMRNSSVVNPEFIQ 325
Query: 1546 EFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSD 1605
+FY +SRLHHLST + K + ++ +GI K
Sbjct: 326 QFYRESRLHHLSTWKAELKAKLQSAAQE-----KGISRTAK------------------- 361
Query: 1606 NPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDI 1665
P + I+H+D D FF +V IR HPEL D+PVA+AHG G S++
Sbjct: 362 KPHVTGARRYILHVDFDSFFAAVSIRKHPELVDQPVAIAHGTGPGSEIAS---------- 411
Query: 1666 YRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTL 1725
R +G+ NGM++ AL+ CPNLK++PYDF Y++ S Y +I S+
Sbjct: 412 --------CNYPARSFGIKNGMWMKAALQMCPNLKVLPYDFAAYEQASRAFYEVILSIDG 463
Query: 1726 NIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
+++VS+ +E+ ++ + D + + REQ + +AQ++
Sbjct: 464 IVQSVSI--DEALVDITGVCLDAGGSDGRGISEGSIWREQEKADEIAQNL 511
Score = 43.5 bits (101), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 10/136 (7%)
Query: 1735 NESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPSPSPILD 1794
++ FL ALP+DIR+EVL++ R + N P + + + VRTP I
Sbjct: 983 SDEFLAALPDDIRREVLEEHKRSRLQKRAVLNLPPPTRRSLFPKPT---VRTPEQKTISL 1039
Query: 1795 MSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQ---PEPSDIEMFSEYLSNLV-EERH 1850
+ T TS LS SL E+R L EW + P D+ ++YL +V EE+
Sbjct: 1040 LPRPEKVTFTSKKLS---SLPELRKALDEWYGAFETEAPYEEDVAALAKYLKRVVLEEKD 1096
Query: 1851 LNPIVILLRFLRRHVG 1866
+ V ++ +L +G
Sbjct: 1097 IAKAVAVVGWLAWLIG 1112
>gi|261195218|ref|XP_002624013.1| DNA damage repair protein Mus42 [Ajellomyces dermatitidis SLH14081]
gi|239587885|gb|EEQ70528.1| DNA damage repair protein Mus42 [Ajellomyces dermatitidis SLH14081]
Length = 1171
Score = 197 bits (500), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 132/392 (33%), Positives = 192/392 (48%), Gaps = 77/392 (19%)
Query: 1898 IVSAVSCDEMYVDCSQL-----------LQELSLTPLQ-----FASYLRETIAKETGCTC 1941
IV +VS DE VD + + + E S+ Q A LR ++ + TGC
Sbjct: 464 IVQSVSIDEALVDITGVCLDAGGSDGRGISEGSIWREQEKADEIAQNLRNSVKERTGCNI 523
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N LQAR+A +KAKP GQF L P + DF+ + + DLPGV HSL KL LG
Sbjct: 524 SVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDFIGTLAVKDLPGVAHSLGAKLEELGVT 583
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++++S ++L + +G K G L+ RG D+ E+ + RKSVSAE+N+GIRF N
Sbjct: 584 FVKDIRDLSREKLTSSLGPKTGAKLWDFARGIDNTEVGVQAPRKSVSAEINWGIRFVNQA 643
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ E F++ L E+ +RL E +KGK +T+++M RSA+AP E K LGHG CD KS +L
Sbjct: 644 QAEEFVQSLCDELHRRLVENLVKGKQLTMRIMKRSADAPLEPVKHLGHGKCDTFNKSVNL 703
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL-KEVLF 2180
GV + AS I+ +E +
Sbjct: 704 -------------------------------GVA-------------TNASDIIGREAIT 719
Query: 2181 IVNKLKVDPVELRGIGIQVSKLE-----HQSKTLATIDTFFTNKGKP---------PDQL 2226
I+ K P +LRG+G+Q++KLE H + ++ P PD++
Sbjct: 720 ILRGFKFSPGDLRGLGVQMTKLEPVKQNHARELDSSQKQISFKPASPTRQRETPIDPDEI 779
Query: 2227 NNPRPGPSNSTITPGPSNSTLPPGPSNSTLPP 2258
N PR G + S P S PG ++++ P
Sbjct: 780 NTPRKGDTTSEYLPKSLQSA--PGLTDASQKP 809
Score = 158 bits (399), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 145/530 (27%), Positives = 232/530 (43%), Gaps = 129/530 (24%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G Y KK KL+ EL A+S IF+GV VNGYT+ PS ++L
Sbjct: 38 GDYFRRKKLKLQNLDAELRASSPQNPPIFRGVVAHVNGYTQ-----------PSLKDLHH 86
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL--- 1432
L++ HGG + Y +T THIIAS L K ++ + +I+KP W+V+S+ AG+LL
Sbjct: 87 LIVSHGGGFLQYLDGKTSATHIIASTLTPKKREEFR-KYRIVKPAWVVESVKAGRLLPWD 145
Query: 1433 --------DHKKYLLYTG-TDAKPLTKLLQKSYFENT-----EAPCCSKSL--------- 1469
+K LL+ G + +SY + T + SKSL
Sbjct: 146 SFRVVDEGQSQKVLLFGGDGQVQSQVNTQSRSYKDQTYTSWYTSQIKSKSLYNDDHMEIT 205
Query: 1470 -VETSSH-------TSTVSDSVDNTEESKSEAVNSEESKS-------EAANPIESKQTVK 1514
+S+H ST+ + + T + AV + +A S++T++
Sbjct: 206 GATSSAHGMDAGTPASTLHNELRGTHSDATMAVFPALDTTLDTGVVNQAITRSSSRETLE 265
Query: 1515 TKE--SKLETVN-ISAPKP------------------------QASSTKNAS--NEDFLG 1545
E ++ TV+ ++ PKP A +N+S N +F+
Sbjct: 266 DPEPPDEIGTVDQVTLPKPVSDKYKESDAHSSMTPEEYNAQLLSAPHMRNSSVVNPEFIQ 325
Query: 1546 EFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSD 1605
+FY +SRLHHLST + K + ++ +GI K
Sbjct: 326 QFYRESRLHHLSTWKAELKAKLQSAAQE-----KGISRTAK------------------- 361
Query: 1606 NPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDI 1665
P + I+H+D D FF +V IR HPEL D+PVA+AHG G S++
Sbjct: 362 KPHVTGARRYILHVDFDSFFAAVSIRKHPELVDQPVAIAHGTGPGSEIAS---------- 411
Query: 1666 YRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTL 1725
R +G+ NGM++ AL+ CPNLK++PYDF Y++ S Y +I S+
Sbjct: 412 --------CNYPARSFGIKNGMWMKAALQMCPNLKVLPYDFAAYEQASRAFYEVILSIDG 463
Query: 1726 NIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
+++VS+ +E+ ++ + D + + REQ + +AQ++
Sbjct: 464 IVQSVSI--DEALVDITGVCLDAGGSDGRGISEGSIWREQEKADEIAQNL 511
Score = 43.9 bits (102), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 10/136 (7%)
Query: 1735 NESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPSPSPILD 1794
++ FL ALP+DIR+EVL++ R + N P + + + VRTP I
Sbjct: 983 SDEFLAALPDDIRREVLEEHKRSRLQKRAGLNLPPPTRRSLFPKPT---VRTPEQKTISL 1039
Query: 1795 MSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQ---PEPSDIEMFSEYLSNLV-EERH 1850
+ T TS LS SL E+R L EW + P D+ ++YL +V EE+
Sbjct: 1040 LPRPEKVTFTSKKLS---SLPELRKALDEWYGAFETEAPYEEDVAALAKYLKRVVLEEKD 1096
Query: 1851 LNPIVILLRFLRRHVG 1866
+ V ++ +L +G
Sbjct: 1097 IAKAVAVVGWLAWLIG 1112
>gi|239610626|gb|EEQ87613.1| DNA damage repair protein Mus42 [Ajellomyces dermatitidis ER-3]
Length = 1171
Score = 197 bits (500), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 132/392 (33%), Positives = 192/392 (48%), Gaps = 77/392 (19%)
Query: 1898 IVSAVSCDEMYVDCSQL-----------LQELSLTPLQ-----FASYLRETIAKETGCTC 1941
IV +VS DE VD + + + E S+ Q A LR ++ + TGC
Sbjct: 464 IVQSVSIDEALVDITGVCLDAGGSDGRGISEGSIWREQEKADEIAQNLRNSVKERTGCNI 523
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N LQAR+A +KAKP GQF L P + DF+ + + DLPGV HSL KL LG
Sbjct: 524 SVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDFIGTLAVKDLPGVAHSLGAKLEELGVT 583
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++++S ++L + +G K G L+ RG D+ E+ + RKSVSAE+N+GIRF N
Sbjct: 584 FVKDIRDLSREKLTSSLGPKTGAKLWDFARGIDNTEVGVQAPRKSVSAEINWGIRFVNQA 643
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ E F++ L E+ +RL E +KGK +T+++M RSA+AP E K LGHG CD KS +L
Sbjct: 644 QAEEFVQSLCDELHRRLVENLVKGKQLTMRIMKRSADAPLEPVKHLGHGKCDTFNKSVNL 703
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL-KEVLF 2180
GV + AS I+ +E +
Sbjct: 704 -------------------------------GVA-------------TNASDIIGREAIT 719
Query: 2181 IVNKLKVDPVELRGIGIQVSKLE-----HQSKTLATIDTFFTNKGKP---------PDQL 2226
I+ K P +LRG+G+Q++KLE H + ++ P PD++
Sbjct: 720 ILRGFKFSPGDLRGLGVQMTKLEPVKQYHARELDSSQKQISFKPASPTRQRETPIDPDEI 779
Query: 2227 NNPRPGPSNSTITPGPSNSTLPPGPSNSTLPP 2258
N PR G + S P S PG ++++ P
Sbjct: 780 NTPRKGDTTSEYLPKSLQSA--PGLTDASQKP 809
Score = 153 bits (387), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 143/530 (26%), Positives = 234/530 (44%), Gaps = 129/530 (24%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G Y KK KL+ EL A+S IF+GV VNGYT+ PS ++L
Sbjct: 38 GDYFRRKKLKLQNLDAELRASSPQNPPIFRGVVAHVNGYTQ-----------PSLKDLHH 86
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAG------ 1429
L++ HGG + Y +T THIIAS L K ++ + +I+KP W+V+S+ AG
Sbjct: 87 LIVSHGGGFLQYLDGKTSATHIIASTLTPKKREEFR-KYRIVKPAWVVESVKAGRLLPWD 145
Query: 1430 --KLLDH---KKYLLYTG-----TDAKPLTKLLQ-KSYFENTEAPCCSKSL-----VETS 1473
+++D +K L++ G + P ++ + ++Y + SKSL +E +
Sbjct: 146 SFRVVDEGQSQKVLMFGGDGQVQSQVNPQSRSYKDQTYTSWYTSQIKSKSLDNDDHMEIT 205
Query: 1474 SHTSTVSDSVDNTEES--KSEAVNSEESKSEAANPI-----------------ESKQTVK 1514
TS+ T S +E + + AA P S++T++
Sbjct: 206 GATSSAHGMDAGTPASTLHNELRGTHSDATMAAFPALNTTLDTGVVNQAITRSSSRETLE 265
Query: 1515 TKE--SKLETVN-ISAPKP------------------------QASSTKNAS--NEDFLG 1545
E ++ TV+ ++ PKP A +N+S N +F+
Sbjct: 266 DPEPPDEIGTVDQVTLPKPVSDKYKESDAHSSMTPEEYNAQLLSAPHMRNSSVVNPEFIQ 325
Query: 1546 EFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSD 1605
+FY +SRLHHLST + K + ++ +GI K
Sbjct: 326 QFYRESRLHHLSTWKAELKAKLQSAAQE-----KGISRTAK------------------- 361
Query: 1606 NPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDI 1665
P + I+H+D D FF +V IR HPEL D+PVA+AHG G S++
Sbjct: 362 KPHVTGARRYILHVDFDSFFAAVSIRKHPELVDQPVAIAHGTGPGSEIAS---------- 411
Query: 1666 YRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTL 1725
R +G+ NGM++ AL+ CPNLK++PYDF Y++ S Y +I S+
Sbjct: 412 --------CNYPARSFGIKNGMWMKAALQMCPNLKVLPYDFAAYEQASRAFYEVILSIDG 463
Query: 1726 NIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
+++VS+ +E+ ++ + D + + REQ + +AQ++
Sbjct: 464 IVQSVSI--DEALVDITGVCLDAGGSDGRGISEGSIWREQEKADEIAQNL 511
Score = 43.9 bits (102), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 10/136 (7%)
Query: 1735 NESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPSPSPILD 1794
++ FL ALP+DIR+EVL++ R + N P + + + VRTP I
Sbjct: 983 SDEFLAALPDDIRREVLEEHKRSRLQKRAGLNLPPPTRRSLFPKPT---VRTPEQKTISL 1039
Query: 1795 MSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQ---PEPSDIEMFSEYLSNLV-EERH 1850
+ T TS LS SL E+R L EW + P D+ ++YL +V EE+
Sbjct: 1040 LPRPEKVTFTSKKLS---SLPELRKALDEWYGAFETEAPYEEDVAALAKYLKRVVLEEKD 1096
Query: 1851 LNPIVILLRFLRRHVG 1866
+ V ++ +L +G
Sbjct: 1097 IAKAVAVVGWLAWLIG 1112
>gi|402585403|gb|EJW79343.1| hypothetical protein WUBG_09749, partial [Wuchereria bancrofti]
Length = 196
Score = 197 bits (500), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 94/135 (69%), Positives = 113/135 (83%), Gaps = 1/135 (0%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITET-MWLMNRETNHMERREITYVPGLYKI 87
++S+EKIYQKKSQLEHILLRPDTYIGSVE + +W+ + E + +R+I+YVPGLYKI
Sbjct: 62 QLSIEKIYQKKSQLEHILLRPDTYIGSVERTDKAPLWVYDAEAERIVQRDISYVPGLYKI 121
Query: 88 FDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGH 147
FDEILVNA DNKQRD KMN IKI +N+ETN ISV+NNGKGIPVV HK E+++VP +IFG
Sbjct: 122 FDEILVNAADNKQRDSKMNLIKININKETNEISVFNNGKGIPVVLHKVEQLYVPELIFGT 181
Query: 148 LLTSSNYNDEEDKVT 162
LLTSSNY+D E KVT
Sbjct: 182 LLTSSNYDDSERKVT 196
>gi|67043834|gb|AAY64011.1| DNA topoisomerase 2 [Pelodiscus sinensis]
Length = 150
Score = 197 bits (500), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 87/126 (69%), Positives = 110/126 (87%), Gaps = 1/126 (0%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 26 RLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIF 84
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EK+++P +IFG L
Sbjct: 85 DEILVNAADNKQRDPKMSCIRVTIDPENNVISIWNNGKGIPVVEHKVEKIYLPALIFGQL 144
Query: 149 LTSSNY 154
LTSSNY
Sbjct: 145 LTSSNY 150
>gi|162532541|gb|ABY16682.1| topoisomerase II [Fusarium culmorum]
Length = 241
Score = 196 bits (499), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 116/279 (41%), Positives = 140/279 (50%), Gaps = 82/279 (29%)
Query: 321 NPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTII 380
+PRWEV A SD FQQVSFVNSIATT GG HV+ + D I K ++ + KK K
Sbjct: 1 HPRWEVGFAVSDGTFQQVSFVNSIATTAGGTHVNYIADQITKSLLNTLNKKRK------- 53
Query: 381 MLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTK 440
G LK ++NHI++FINC I NP F SQTK
Sbjct: 54 -----------------------------GHTLKQNHLRNHIFVFINCYIDNPAFSSQTK 84
Query: 441 ENMTLQKGSFGSTCV-------------------------------------------PK 457
E MT + FGS C K
Sbjct: 85 EQMTTKASQFGSKCTLGDDFLKKVAKSDAIQNILDMAEKKADKMMAKSDGNKRSRVNNAK 144
Query: 458 LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQ 517
L +AN AGT+ +CTLILTEGDSAK LAVSG ++ D+ GVFPLRGKLLNVR+A+ Q
Sbjct: 145 LVEANFAGTRRGHECTLILTEGDSAKGLAVSGRAILDPDRIGVFPLRGKLLNVRDASPDQ 204
Query: 518 ILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIM 556
I +N EI N+ + LGL++ YT D K LRYG LMIM
Sbjct: 205 IAKNQEIQNIKQFLGLKHKTSYT---DTKNLRYGHLMIM 240
>gi|154281677|ref|XP_001541651.1| hypothetical protein HCAG_03749 [Ajellomyces capsulatus NAm1]
gi|150411830|gb|EDN07218.1| hypothetical protein HCAG_03749 [Ajellomyces capsulatus NAm1]
Length = 1162
Score = 196 bits (499), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 119/323 (36%), Positives = 170/323 (52%), Gaps = 61/323 (18%)
Query: 1898 IVSAVSCDEMYVDCSQLLQ-----------ELSLTPLQ-----FASYLRETIAKETGCTC 1941
+V +VS DE VD + L Q E S+ Q A LR+++ ++TGC
Sbjct: 456 VVQSVSIDEALVDITNLCQDAVGSSGRDISEGSIWREQEKADEIAQKLRDSVKEQTGCNI 515
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N LQAR+A +KAKP GQF L P + DF+ + + DLPGV HSL KL LG
Sbjct: 516 SVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDFIGTLTVKDLPGVAHSLGAKLEELGVT 575
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ +S ++L + +G K G L+ RG D+ E+ F RKSVSAE+++GIRF N
Sbjct: 576 FVKDIRELSKEKLISSLGPKTGTKLWDFSRGIDNTEVGFHPPRKSVSAEISWGIRFVNQA 635
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ E F++ L E+ +RL E +KGK +T+++M RSA+AP E +K LGHG CD KS +L
Sbjct: 636 QAEEFVQSLCDELHRRLVENLVKGKQLTMRIMKRSADAPLEPAKHLGHGKCDTFNKSVNL 695
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL-KEVLF 2180
GV + AS I+ +E +
Sbjct: 696 -------------------------------GVA-------------TNASDIIGREAIS 711
Query: 2181 IVNKLKVDPVELRGIGIQVSKLE 2203
I+ K P +LRG+G+Q++KLE
Sbjct: 712 ILRGFKFSPGDLRGLGVQMTKLE 734
Score = 155 bits (392), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 141/524 (26%), Positives = 224/524 (42%), Gaps = 125/524 (23%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G Y+ KK KL+ E+ A+S IF+GV VNGYT+ PS +L
Sbjct: 38 GDYIRRKKLKLQNLDTEIRASSPQNPPIFRGVVAHVNGYTQ-----------PSLSDLHH 86
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL--- 1432
L++ HGG + Y +T THIIAS L K ++ + +I+KP W+V+S+ AG+LL
Sbjct: 87 LIVSHGGGFLQYLDGKTSATHIIASALTPKKREEFR-KYRIVKPSWVVESVKAGRLLPWD 145
Query: 1433 --------DHKKYLLYTGT-DAKPLTKLLQKSYFENTEA----------PCCSKSLVETS 1473
+K L++ G + +SY + T P + +E
Sbjct: 146 SFRVVDEGQSQKVLMFGGDGQIQSQANTQNRSYRDQTNTSLYISQMKSKPTDADDPMEIP 205
Query: 1474 SHTSTVSDSVDNTEESKSEAVNSEESKSEAA----NPIESKQTVKTKESKLETVNISAP- 1528
++ D V E+ S + N +++ +AA + ES Q + S + + +P
Sbjct: 206 RDAASAYDGV--IGEAWSSSQNEDQTVQDAAIATFSAPESDQKITGSGSPTKAAILESPD 263
Query: 1529 ---------KPQASSTKNASNE----------------------------DFLGEFYNKS 1551
P+A K N+ +F+ +FY +S
Sbjct: 264 EARMVEQVMHPEAIPDKKKGNDAHSSMTPEMYNAQLLSAPHMRNSSVVNPEFIQQFYRES 323
Query: 1552 RLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSE 1611
RLHHLST + EL+ K + + RK K + S
Sbjct: 324 RLHHLST-------WKAELKAKLQAAAQEKVSSRKGKKT-----------------HVSG 359
Query: 1612 PEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTM 1671
I+H+D D FF +V +R HPEL D+PVA+AHG G S++
Sbjct: 360 ARRYILHVDFDSFFAAVSLRKHPELVDQPVAIAHGTGPGSEIAS---------------- 403
Query: 1672 NRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
R +G+ NGM++ AL+ CPNLK++PYDF Y+E S Y++I S+ +++VS
Sbjct: 404 --CNYPARSFGIKNGMWMKGALQMCPNLKVLPYDFAAYEEASEKFYDVILSIDAVVQSVS 461
Query: 1732 LYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
+ + L +D D+S + + REQ + +AQ +
Sbjct: 462 IDEALVDITNLCQDAVGSSGRDIS--EGSIWREQEKADEIAQKL 503
>gi|325093158|gb|EGC46468.1| DNA damage repair protein Mus42 [Ajellomyces capsulatus H88]
Length = 1162
Score = 196 bits (497), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 117/323 (36%), Positives = 170/323 (52%), Gaps = 61/323 (18%)
Query: 1898 IVSAVSCDEMYVDCSQLLQE--------LSLTPL--------QFASYLRETIAKETGCTC 1941
+V +VS DE VD + L Q+ +S + + A LR+++ ++TGC
Sbjct: 456 VVQSVSIDEALVDITNLCQDAVGSRGRDISEDSIWREQEKADEIAQKLRDSVKEQTGCNI 515
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N LQAR+A +KAKP GQF L P + DF+ + + DLPGV HSL KL LG
Sbjct: 516 SVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDFIGTLAVKDLPGVAHSLGAKLEELGVT 575
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ +S ++L + +G K G L+ RG D+ E+ F RKSVSAE+++GIRF N
Sbjct: 576 FVKDIRELSKEKLISSLGPKTGTKLWDFSRGIDNTEVGFHPPRKSVSAEISWGIRFVNQA 635
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ E F++ L E+ +RL E +KGK +T+++M RSA+AP E K LGHG CD KS +L
Sbjct: 636 QAEEFVQSLCDELHRRLVENLVKGKQLTMRIMKRSADAPLEPVKHLGHGKCDTFNKSVNL 695
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL-KEVLF 2180
GV + AS I+ +E +
Sbjct: 696 -------------------------------GVA-------------TNASDIIGREAIS 711
Query: 2181 IVNKLKVDPVELRGIGIQVSKLE 2203
I+ K P +LRG+G+Q++KLE
Sbjct: 712 ILRGFKFSPGDLRGLGVQMTKLE 734
Score = 157 bits (398), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 139/528 (26%), Positives = 224/528 (42%), Gaps = 133/528 (25%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G Y+ KK KL+ E+ A+S IF+GV VNGYT+ PS +L
Sbjct: 38 GDYIRRKKLKLQNLDTEIRASSPQNPPIFRGVVAHVNGYTQ-----------PSLSDLHH 86
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL--- 1432
L++ HGG + Y +T THIIAS L K ++ + +I+KP W+V+S+ AG+LL
Sbjct: 87 LIVSHGGGFLQYLDGKTSATHIIASALTPKKREEFR-KYRIVKPSWVVESVKAGRLLPWD 145
Query: 1433 --------DHKKYLLYTGT-DAKPLTKLLQKSYFENTEA----------PCCSKSLVETS 1473
+K L++ G + +SY + T+ P + +E
Sbjct: 146 GFRVVDEGQSQKVLMFGGDGQIQSQANTQNRSYRDQTDTSLYISQMKSKPTDADHPMEIP 205
Query: 1474 SHTSTVSDSVDNTEESKSEAVNSEESKSEAANPI----ESKQTVKTKESKLETVNISAP- 1528
S ++ D V E+ S + N ++ +AA ES Q + + S + + +P
Sbjct: 206 SDAASAYDGV--IGEAWSSSQNEHQTVRDAAIATFPAPESDQKITSSGSPTKAAILESPD 263
Query: 1529 ---------KPQASSTKNASNE----------------------------DFLGEFYNKS 1551
P+A K N+ DF+ +FY +S
Sbjct: 264 EARMVEQVMHPEAIPDKQKGNDAHSSMTPEMYNAQLLSAPHMRNSSVVNPDFIQQFYRES 323
Query: 1552 RLHHLSTMGSMFKQYVNELREKHDGVFRG----IEAIRKWKTSLGITEDEDLEETFSDNP 1607
RLHHLST + K + ++ +G + RK+
Sbjct: 324 RLHHLSTWKAELKGKLQAAAQEKVSSRKGKKTHVPGARKY-------------------- 363
Query: 1608 SPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYR 1667
I+H+D D FF +V ++ HPEL D+PVA+AHG G S++
Sbjct: 364 --------ILHVDFDSFFAAVSLQKHPELVDQPVAIAHGTGPGSEIAS------------ 403
Query: 1668 QRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNI 1727
R +G+ NGM++ AL+ CPNLK++PYDF Y+E S Y++I S+ +
Sbjct: 404 ------CNYPARSFGIKNGMWMKGALQMCPNLKVLPYDFAAYEEASRKFYDVILSIDAVV 457
Query: 1728 EAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
++VS+ + L +D D+S + + REQ + +AQ +
Sbjct: 458 QSVSIDEALVDITNLCQDAVGSRGRDIS--EDSIWREQEKADEIAQKL 503
>gi|317031843|ref|XP_001393536.2| DNA damage repair protein Mus42 [Aspergillus niger CBS 513.88]
Length = 1155
Score = 195 bits (496), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 171/323 (52%), Gaps = 59/323 (18%)
Query: 1898 IVSAVSCDEMYVD-CSQLLQ----------ELSLTPLQ-----FASYLRETIAKETGCTC 1941
IV +VS DE VD +Q L+ E SL Q A LR T+ KETGC
Sbjct: 466 IVQSVSIDEALVDITTQCLEAGGSDGRGISEGSLYREQARADEIADELRATVKKETGCAV 525
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N L A++A +KAKP GQF L P + DF+ N+ + DLPGVG+SL KL LG +
Sbjct: 526 SVGIGGNILLAKVALRKAKPAGQFQLKPDAVLDFIGNLTVQDLPGVGYSLGTKLEDLGVK 585
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D+++++ RL +G K G+ ++++ RG D E+ E RKSVSAEVN+GIRF N
Sbjct: 586 LVKDVRDLTRDRLTTSLGPKTGVKIWEYARGIDRTEVGNEVLRKSVSAEVNWGIRFVNQT 645
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ E F++ L E+ +RL E +KG+ +TLK+M R+ +AP E K LGHG CD KS L
Sbjct: 646 QAEDFVRSLCQELHRRLVENLVKGQQLTLKVMRRALDAPLEPVKHLGHGKCDVFNKSVVL 705
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
+ +A+ LG KE + +
Sbjct: 706 GVAT-------------------DAADILG------------------------KEAVAM 722
Query: 2182 VNKLKVDPVELRGIGIQVSKLEH 2204
+ + + P +LRG+G+Q++KL+H
Sbjct: 723 LRSMNLSPGDLRGLGVQMTKLQH 745
Score = 144 bits (362), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 126/515 (24%), Positives = 218/515 (42%), Gaps = 101/515 (19%)
Query: 1321 YMEAKKRKLEEQ-FELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALM 1379
YM KK KL+ + ++ +++ IF+GV VNGYT+ PS ++L L+
Sbjct: 40 YMRRKKIKLQNRDADIRSSAADCPPIFRGVVAHVNGYTQ-----------PSLQDLHRLI 88
Query: 1380 MLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY 1437
+ HGG + Y S +T THIIAS L K ++ + +I+KP W+V+S+ AG++L +
Sbjct: 89 VSHGGGFLQYLSGKTDATHIIASALTPKKREEFR-RYRIVKPAWVVESVKAGRMLPWDSF 147
Query: 1438 LLYTGTDAKPLTKLLQKSYFENTEAPCCS-KSLVETSSHTSTV---SDSVDNTEESKSEA 1493
+ ++ + + +P + TS +T+ + + SV+ T +S
Sbjct: 148 RVVDEGQSQKVLRFDDGRMVSQMNSPRSGYREQTNTSWYTAQLQEAASSVEKTNPQRSPP 207
Query: 1494 VNSEESKSEAANPIESKQT------------------------------------VKTKE 1517
SE E A P + Q+ V+ K+
Sbjct: 208 PRSEMPNREDATPDDGSQSDYSQFPSFASLDEISTTPKIPSSGEVRAETPDKLSPVEHKD 267
Query: 1518 SKLETVNISAPKPQASST------------KNASNEDFLGEFYNKSRLHHLSTMGSMF-K 1564
++ T + +P+ ++E++ + + + + S F +
Sbjct: 268 AEPNTYKLEDDQPEVPPAPLPLLRESIPVKPEMTSEEYNAQLLSDPHMRNSSVANPQFIQ 327
Query: 1565 QYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEP----VIMHID 1620
Q+ +E R H + WK L +E +P P IMH+D
Sbjct: 328 QFYSESRLHH---------LSTWKADLKAQLQSAAKEKSQSQLKRKKPAPGARRYIMHVD 378
Query: 1621 MDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTRE 1680
DCFF +V PELQ +PVAVAHG G+ S++ R
Sbjct: 379 FDCFFAAVSTLKRPELQGKPVAVAHGTGSGSEIAS------------------CNYEARA 420
Query: 1681 YGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLN 1740
+G+ NGM++ AL+ CP LK+VPYDF Y+E S Y+ I S+ +++VS+ +E+ ++
Sbjct: 421 HGIKNGMWMKGALQTCPELKVVPYDFPAYEEASRKFYSAILSVDGIVQSVSI--DEALVD 478
Query: 1741 ALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
+ + D + L REQ + +A ++
Sbjct: 479 ITTQCLEAGGSDGRGISEGSLYREQARADEIADEL 513
>gi|134078076|emb|CAK40159.1| unnamed protein product [Aspergillus niger]
Length = 1165
Score = 195 bits (496), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 171/323 (52%), Gaps = 59/323 (18%)
Query: 1898 IVSAVSCDEMYVD-CSQLLQ----------ELSLTPLQ-----FASYLRETIAKETGCTC 1941
IV +VS DE VD +Q L+ E SL Q A LR T+ KETGC
Sbjct: 466 IVQSVSIDEALVDITTQCLEAGGSDGRGISEGSLYREQARADEIADELRATVKKETGCAV 525
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N L A++A +KAKP GQF L P + DF+ N+ + DLPGVG+SL KL LG +
Sbjct: 526 SVGIGGNILLAKVALRKAKPAGQFQLKPDAVLDFIGNLTVQDLPGVGYSLGTKLEDLGVK 585
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D+++++ RL +G K G+ ++++ RG D E+ E RKSVSAEVN+GIRF N
Sbjct: 586 LVKDVRDLTRDRLTTSLGPKTGVKIWEYARGIDRTEVGNEVLRKSVSAEVNWGIRFVNQT 645
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ E F++ L E+ +RL E +KG+ +TLK+M R+ +AP E K LGHG CD KS L
Sbjct: 646 QAEDFVRSLCQELHRRLVENLVKGQQLTLKVMRRALDAPLEPVKHLGHGKCDVFNKSVVL 705
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
+ +A+ LG KE + +
Sbjct: 706 GVAT-------------------DAADILG------------------------KEAVAM 722
Query: 2182 VNKLKVDPVELRGIGIQVSKLEH 2204
+ + + P +LRG+G+Q++KL+H
Sbjct: 723 LRSMNLSPGDLRGLGVQMTKLQH 745
Score = 144 bits (362), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 126/515 (24%), Positives = 218/515 (42%), Gaps = 101/515 (19%)
Query: 1321 YMEAKKRKLEEQ-FELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALM 1379
YM KK KL+ + ++ +++ IF+GV VNGYT+ PS ++L L+
Sbjct: 40 YMRRKKIKLQNRDADIRSSAADCPPIFRGVVAHVNGYTQ-----------PSLQDLHRLI 88
Query: 1380 MLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY 1437
+ HGG + Y S +T THIIAS L K ++ + +I+KP W+V+S+ AG++L +
Sbjct: 89 VSHGGGFLQYLSGKTDATHIIASALTPKKREEFR-RYRIVKPAWVVESVKAGRMLPWDSF 147
Query: 1438 LLYTGTDAKPLTKLLQKSYFENTEAPCCS-KSLVETSSHTSTV---SDSVDNTEESKSEA 1493
+ ++ + + +P + TS +T+ + + SV+ T +S
Sbjct: 148 RVVDEGQSQKVLRFDDGRMVSQMNSPRSGYREQTNTSWYTAQLQEAASSVEKTNPQRSPP 207
Query: 1494 VNSEESKSEAANPIESKQT------------------------------------VKTKE 1517
SE E A P + Q+ V+ K+
Sbjct: 208 PRSEMPNREDATPDDGSQSDYSQFPSFASLDEISTTPKIPSSGEVRAETPDKLSPVEHKD 267
Query: 1518 SKLETVNISAPKPQASST------------KNASNEDFLGEFYNKSRLHHLSTMGSMF-K 1564
++ T + +P+ ++E++ + + + + S F +
Sbjct: 268 AEPNTYKLEDDQPEVPPAPLPLLRESIPVKPEMTSEEYNAQLLSDPHMRNSSVANPQFIQ 327
Query: 1565 QYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEP----VIMHID 1620
Q+ +E R H + WK L +E +P P IMH+D
Sbjct: 328 QFYSESRLHH---------LSTWKADLKAQLQSAAKEKSQSQLKRKKPAPGARRYIMHVD 378
Query: 1621 MDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTRE 1680
DCFF +V PELQ +PVAVAHG G+ S++ R
Sbjct: 379 FDCFFAAVSTLKRPELQGKPVAVAHGTGSGSEIAS------------------CNYEARA 420
Query: 1681 YGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLN 1740
+G+ NGM++ AL+ CP LK+VPYDF Y+E S Y+ I S+ +++VS+ +E+ ++
Sbjct: 421 HGIKNGMWMKGALQTCPELKVVPYDFPAYEEASRKFYSAILSVDGIVQSVSI--DEALVD 478
Query: 1741 ALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
+ + D + L REQ + +A ++
Sbjct: 479 ITTQCLEAGGSDGRGISEGSLYREQARADEIADEL 513
>gi|350639910|gb|EHA28263.1| hypothetical protein ASPNIDRAFT_43424 [Aspergillus niger ATCC 1015]
Length = 1165
Score = 195 bits (496), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 171/323 (52%), Gaps = 59/323 (18%)
Query: 1898 IVSAVSCDEMYVD-CSQLLQ----------ELSLTPLQ-----FASYLRETIAKETGCTC 1941
IV +VS DE VD +Q L+ E SL Q A LR T+ KETGC
Sbjct: 466 IVQSVSIDEALVDITTQCLEAGGSDGRGISEGSLYREQARADEIADELRATVKKETGCAV 525
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N L A++A +KAKP GQF L P + DF+ N+ + DLPGVG+SL KL LG +
Sbjct: 526 SVGIGGNILLAKVALRKAKPAGQFQLKPDAVLDFIGNLTVQDLPGVGYSLGTKLEDLGVK 585
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D+++++ RL +G K G+ ++++ RG D E+ E RKSVSAEVN+GIRF N
Sbjct: 586 LVKDVRDLTRDRLTTSLGPKTGVKIWEYARGIDRTEVGNEVLRKSVSAEVNWGIRFVNQT 645
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ E F++ L E+ +RL E +KG+ +TLK+M R+ +AP E K LGHG CD KS L
Sbjct: 646 QAEDFVRSLCQELHRRLVENLVKGQQLTLKVMRRALDAPLEPVKHLGHGKCDVFNKSVVL 705
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
+ +A+ LG KE + +
Sbjct: 706 GVAT-------------------DAADILG------------------------KEAVAM 722
Query: 2182 VNKLKVDPVELRGIGIQVSKLEH 2204
+ + + P +LRG+G+Q++KL+H
Sbjct: 723 LRSMNLSPGDLRGLGVQMTKLQH 745
Score = 144 bits (362), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 126/515 (24%), Positives = 218/515 (42%), Gaps = 101/515 (19%)
Query: 1321 YMEAKKRKLEEQ-FELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALM 1379
YM KK KL+ + ++ +++ IF+GV VNGYT+ PS ++L L+
Sbjct: 40 YMRRKKIKLQNRDADIRSSAADCPPIFRGVVAHVNGYTQ-----------PSLQDLHRLI 88
Query: 1380 MLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY 1437
+ HGG + Y S +T THIIAS L K ++ + +I+KP W+V+S+ AG++L +
Sbjct: 89 VSHGGGFLQYLSGKTDATHIIASALTPKKREEFR-RYRIVKPAWVVESVKAGRMLPWDSF 147
Query: 1438 LLYTGTDAKPLTKLLQKSYFENTEAPCCS-KSLVETSSHTSTV---SDSVDNTEESKSEA 1493
+ ++ + + +P + TS +T+ + + SV+ T +S
Sbjct: 148 RVVDEGQSQKVLRFDDGRMVSQMNSPRSGYREQTNTSWYTAQLQEAASSVEKTNPQRSPP 207
Query: 1494 VNSEESKSEAANPIESKQT------------------------------------VKTKE 1517
SE E A P + Q+ V+ K+
Sbjct: 208 PRSEMPNREDATPDDGSQSDYSQFPSFASLDEISTTPKIPSSGEVRAETPDKLSPVEHKD 267
Query: 1518 SKLETVNISAPKPQASST------------KNASNEDFLGEFYNKSRLHHLSTMGSMF-K 1564
++ T + +P+ ++E++ + + + + S F +
Sbjct: 268 AEPNTYKLEDDQPEVPPAPLPLLRESIPVKPEMTSEEYNAQLLSDPHMRNSSVANPQFIQ 327
Query: 1565 QYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEP----VIMHID 1620
Q+ +E R H + WK L +E +P P IMH+D
Sbjct: 328 QFYSESRLHH---------LSTWKADLKAQLQSAAKEKSQSQLKRKKPAPGARRYIMHVD 378
Query: 1621 MDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTRE 1680
DCFF +V PELQ +PVAVAHG G+ S++ R
Sbjct: 379 FDCFFAAVSTLKRPELQGKPVAVAHGTGSGSEIAS------------------CNYEARA 420
Query: 1681 YGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLN 1740
+G+ NGM++ AL+ CP LK+VPYDF Y+E S Y+ I S+ +++VS+ +E+ ++
Sbjct: 421 HGIKNGMWMKGALQTCPELKVVPYDFPAYEEASRKFYSAILSVDGIVQSVSI--DEALVD 478
Query: 1741 ALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
+ + D + L REQ + +A ++
Sbjct: 479 ITTQCLEAGGSDGRGISEGSLYREQARADEIADEL 513
>gi|225563209|gb|EEH11488.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 1162
Score = 195 bits (495), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 117/323 (36%), Positives = 170/323 (52%), Gaps = 61/323 (18%)
Query: 1898 IVSAVSCDEMYVDCSQLLQE--------LSLTPL--------QFASYLRETIAKETGCTC 1941
+V +VS DE VD + L Q+ +S + + A LR+++ ++TGC
Sbjct: 456 VVQSVSIDEALVDITNLCQDAVGSRGRDISEDSIWREQEKADEIAQKLRDSVKEQTGCNI 515
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N LQAR+A +KAKP GQF L P + DF+ + + DLPGV HSL KL LG
Sbjct: 516 SVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDFIGTLTVKDLPGVAHSLGAKLEELGVT 575
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ +S ++L + +G K G L+ RG D+ E+ F RKSVSAE+++GIRF N
Sbjct: 576 FVKDIRELSKEKLISSLGPKTGTKLWDFSRGIDNTEVGFHPPRKSVSAEISWGIRFVNQA 635
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ E F++ L E+ +RL E +KGK +T+++M RSA+AP E K LGHG CD KS +L
Sbjct: 636 QAEEFVQSLCDELHRRLVENLVKGKQLTMRIMKRSADAPLEPVKHLGHGKCDTFNKSVNL 695
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL-KEVLF 2180
GV + AS I+ +E +
Sbjct: 696 -------------------------------GVA-------------TNASDIIGREAIS 711
Query: 2181 IVNKLKVDPVELRGIGIQVSKLE 2203
I+ K P +LRG+G+Q++KLE
Sbjct: 712 ILRGFKFSPGDLRGLGVQMTKLE 734
Score = 152 bits (383), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 222/526 (42%), Gaps = 129/526 (24%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G Y+ KK KL+ E+ A+S IF+GV VNGYT+ PS +L
Sbjct: 38 GDYIRRKKLKLQNLDTEIRASSPQNPPIFRGVVAHVNGYTQ-----------PSLSDLHH 86
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL--- 1432
L++ HGG + Y +T THIIAS L K ++ + +I+KP W+V+S+ +G+LL
Sbjct: 87 LIVSHGGGFLQYLDGKTSATHIIASALTPKKREEFR-KYRIVKPSWVVESVKSGRLLPWD 145
Query: 1433 --------DHKKYLLYTGT-DAKPLTKLLQKSYFENTEA----------PCCSKSLVETS 1473
+K L++ G + +SY + T P + +E
Sbjct: 146 GFRVVDEGQSQKVLMFGGDGQIQSQANTQNRSYRDQTNTSLYISQMKSKPTDADDPMEIP 205
Query: 1474 SHTSTVSDSVDNTEESKSE---------------AVNSEESKSEAANP------------ 1506
++ D V S S+ A S++ +++ +P
Sbjct: 206 RDAASAYDGVIGETWSSSQNEHQTVLDAAIATFPAPESDQKITDSGSPTKAAILESPDEA 265
Query: 1507 -----------IESKQTVKTKESKLETVNISAPKPQASSTKNAS--NEDFLGEFYNKSRL 1553
I +KQ S + +A A +N+S N +F+ +FY +SRL
Sbjct: 266 RMVEHVMHPEAIPNKQQGNDAHSSMTPEMYNAQLLSAPHMRNSSVVNPEFIQQFYRESRL 325
Query: 1554 HHLSTMGSMFKQYVNELREKHDGVFRG----IEAIRKWKTSLGITEDEDLEETFSDNPSP 1609
HHLST + K + ++ +G + RK+
Sbjct: 326 HHLSTWKAELKAKLQAAAQEKVSSRKGKKTHVSGARKY---------------------- 363
Query: 1610 SEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQR 1669
I+H+D D FF +V ++ HPEL D+PVA+AHG G S++
Sbjct: 364 ------ILHVDFDSFFAAVSLQKHPELVDQPVAIAHGTGPGSEIAS-------------- 403
Query: 1670 TMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEA 1729
R +G+ NGM++ AL+ CPNLK++PYDF Y+E S Y++I S+ +++
Sbjct: 404 ----CNYPARSFGIKNGMWMKGALQMCPNLKVLPYDFAAYEEASRKFYDVILSIDAVVQS 459
Query: 1730 VSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
VS+ + L +D D+S + + REQ + +AQ +
Sbjct: 460 VSIDEALVDITNLCQDAVGSRGRDIS--EDSIWREQEKADEIAQKL 503
>gi|324512142|gb|ADY45037.1| DNA repair protein REV1, partial [Ascaris suum]
Length = 393
Score = 194 bits (494), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 102/227 (44%), Positives = 144/227 (63%), Gaps = 4/227 (1%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQ-FASYLRETIAKETGCTCSTGFGSNKLQARLATK 1957
+ AVSCDEMYVD + L E+ + + S +RE I ET C S G G + L ARL+T+
Sbjct: 136 IRAVSCDEMYVDLNSLCSEMRIMDVMGVVSIIREEIHAETQCNASVGVGPSMLIARLSTR 195
Query: 1958 KAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLN-SLG-AQTCGDLQNISLKRLQ 2015
AKPNGQF + + +FM +S+LPG+G+++ KLN + G + C +LQ + + LQ
Sbjct: 196 HAKPNGQFVVKCAEVENFMRKERISNLPGIGYNIRAKLNQTFGEMELCEELQTLQMSELQ 255
Query: 2016 NEVGNKNGLTLYKHCRGED-DKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEV 2074
+G K GL +Y CRG D ++++ + RKS+S VNYGIRF EM FLK +A E+
Sbjct: 256 QLLGTKTGLQIYNLCRGVDKERDIVEKSVRKSISCNVNYGIRFNKENEMLDFLKTMAIEL 315
Query: 2075 EKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
EK+L M +TLK+M+R+A+AP E KFLGHGVCD +T+S+ L
Sbjct: 316 EKKLRNAHMAFSTVTLKVMIRAADAPMEPEKFLGHGVCDTVTRSAPL 362
Score = 96.3 bits (238), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 87/185 (47%), Gaps = 29/185 (15%)
Query: 1563 FKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMD 1622
+QYV+ELR + F I+ L SP PE I H+D+D
Sbjct: 1 MRQYVSELRNGSNPQF--------------ISRQRLLHLVCECFESP--PEETICHVDLD 44
Query: 1623 CFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYG 1682
CFFVSV +R P+L +PVA+ H +G + G+ A R YG
Sbjct: 45 CFFVSVALRTRPDLIGKPVAITHSRGLDASA--GMSEVAS-----------CSYEARAYG 91
Query: 1683 LGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNAL 1742
+ NG +V A CP+L +PY FE Y+ +S +Y +I+ TL+I AVS LN+L
Sbjct: 92 VRNGCYVRQAKSVCPDLICLPYQFEDYRAISKLIYEVISRYTLDIRAVSCDEMYVDLNSL 151
Query: 1743 PEDIR 1747
++R
Sbjct: 152 CSEMR 156
>gi|340377615|ref|XP_003387325.1| PREDICTED: DNA repair protein REV1-like [Amphimedon queenslandica]
Length = 807
Score = 194 bits (494), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 97/231 (41%), Positives = 145/231 (62%), Gaps = 7/231 (3%)
Query: 1896 SKIVSAVSCDEMYVDCSQLL---QELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQA 1952
S +V VSCDE++++ S + +EL LR I ++TGC S GF N L A
Sbjct: 309 SHLVEPVSCDEVFIEFSDYVTSWEELG----DIVKSLRSEIEEKTGCKVSAGFSHNLLLA 364
Query: 1953 RLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLK 2012
RLAT+KAKPNGQFHL+ + + ++ P++ LPG+G + +L+ +G CG+L+ +SL
Sbjct: 365 RLATRKAKPNGQFHLSEEEVEGYLKETPVASLPGIGRKMKEELSKMGVSNCGELREVSLP 424
Query: 2013 RLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAG 2072
+L+ G K G TLY RG D+++LT + +RKS+S E+NYG+RF+ E E+ L QL+
Sbjct: 425 KLREVFGPKTGYTLYCFARGIDNRDLTTKKERKSISVEINYGMRFEQISEAESLLTQLSE 484
Query: 2073 EVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPI 2123
E++ R + + G I+LKL +R AP+E K+LGHG CD I++S L I
Sbjct: 485 ELQSRALDTGVLGSSISLKLKIRQKTAPQETKKYLGHGRCDNISRSQQLHI 535
Score = 102 bits (254), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 99/199 (49%), Gaps = 36/199 (18%)
Query: 1540 NEDFLGEFYNKSRLHHLSTMGSMFKQYV--NELREKHD-GVFRGIEAIRKWKTSLGITED 1596
+ F+ EFY+ SRLHHLST S K++ N R K + E++R++ G+
Sbjct: 147 DRSFVDEFYSHSRLHHLSTWASELKEFTSKNLPRAKRKFSMLSSGESLRRF----GVKG- 201
Query: 1597 EDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREG 1656
++H+D+D FFVSVG+R P L +PVAV H + +EG
Sbjct: 202 -------------------VVHLDLDSFFVSVGLRDRPGLHGQPVAVTHARN-----KEG 237
Query: 1657 -VDRQAEFDIYRQRTMNRMG---LNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEV 1712
D + ++M+ + R++G+ NGM VG A+ CP+L +PY+FE Y V
Sbjct: 238 EADTTEVVGVSLHQSMSDVASCSYEARDFGIRNGMSVGEAINLCPSLTFIPYEFEKYHAV 297
Query: 1713 SYCLYNLIASLTLNIEAVS 1731
S LY + + + +E VS
Sbjct: 298 SQTLYETVITYSHLVEPVS 316
Score = 99.4 bits (246), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 75/122 (61%), Gaps = 15/122 (12%)
Query: 1321 YMEAKKRKLEEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMM 1380
YM K++KL++Q E + + G IF GV I+VNGYTK P A+ LK ++
Sbjct: 11 YMTVKRQKLQDQLE---DVEGDGKIFSGVTIYVNGYTK-----------PDADTLKEIIC 56
Query: 1381 LHGGIYHHYESSRTTHIIASNLPHTKIKKLK-PGDKIIKPEWIVDSISAGKLLDHKKYLL 1439
HGG Y + +SR +H+IA+NLP KIK L K+ P+WI+DS++AG LL +KY L
Sbjct: 57 KHGGGYSYALTSRVSHVIATNLPTAKIKALSINSSKVCHPDWILDSVNAGSLLPTEKYEL 116
Query: 1440 YT 1441
Y+
Sbjct: 117 YS 118
Score = 50.4 bits (119), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 21/153 (13%)
Query: 1735 NESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPSPSPILD 1794
++S L ALP D+++EV D S++Q +E+ T EP++ + A+ P+
Sbjct: 659 DQSVLLALPSDLQEEVFDSYSKRQ---DKERVTLEPVSTEPSLAN-----------PLFP 704
Query: 1795 MSTSILDTTTSHILSSNVSLQEMRTMLREWMC--ESQPEPSDIEMFSEYLSNLVEERHLN 1852
S S L L E RT ++ W+ + P+ D +F ++L +L++ L
Sbjct: 705 PSLSSLSNGNPERF-----LNETRTHIKAWVALYPAGPKERDSTIFIQFLISLIDLNALE 759
Query: 1853 PIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQ 1885
+ + L+ R V + W EAY +++ +Q
Sbjct: 760 IVSLSLKCFHRVVQSITNEKWREAYARVVAVIQ 792
>gi|350582113|ref|XP_003481197.1| PREDICTED: DNA repair protein REV1-like, partial [Sus scrofa]
Length = 643
Score = 194 bits (494), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 92/175 (52%), Positives = 126/175 (72%)
Query: 1947 SNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDL 2006
SN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVG S+ KL SLG +TCGDL
Sbjct: 1 SNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGRSMESKLMSLGIRTCGDL 60
Query: 2007 QNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETF 2066
Q +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGIRF +E E F
Sbjct: 61 QYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGIRFTQPKEAEAF 120
Query: 2067 LKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
L L+ E+++RLE +KGK +TLK+MVR AP E +KF GHG+CD I ++ +L
Sbjct: 121 LLSLSEEIQRRLETAGVKGKRLTLKIMVRKPGAPVETAKFGGHGICDTICRTVTL 175
Score = 50.1 bits (118), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+LREW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 551 LAGAVEFSDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 610
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 611 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 642
>gi|388582924|gb|EIM23227.1| DNA repair protein [Wallemia sebi CBS 633.66]
Length = 1016
Score = 194 bits (492), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 137/378 (36%), Positives = 189/378 (50%), Gaps = 63/378 (16%)
Query: 1894 SESKIVSAVSCDEMYVDCSQLLQELSL--------TPLQFASYLRETIAKETGCTCSTGF 1945
S S ++ AVS DE +D S+++ S A +R + + T C S G
Sbjct: 313 SHSDLLQAVSVDEALLDVSKIVANKSKDNTSNEDEIVFNLAEDIRNLVRERTSCEASVGI 372
Query: 1946 GSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL-NSLGAQTCG 2004
GSN L A++AT++AKP G FHL + +F+ + LPGVG + K+ + LG G
Sbjct: 373 GSNILLAKVATRRAKPAGTFHLKSEQAVEFLNPLQFDSLPGVGSEMRHKIQHQLGVFNIG 432
Query: 2005 DL-QNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEM 2063
+L +N SL +Q +G K G T++ + G DD++L FE +R+SVSAEVNYGIRF+N +E
Sbjct: 433 ELIRNKSLSDVQRVLGKKLGETVWNNSHGIDDRQLVFEKKRQSVSAEVNYGIRFENMEET 492
Query: 2064 ETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPI 2123
E F L+GE+ KRL E K K +T+K+M R +AP+EA+KFLGHGV D +KS
Sbjct: 493 EKFFYNLSGELSKRLIEAKCKSNSLTVKIMTRRQDAPKEAAKFLGHGVVDVHSKS----- 547
Query: 2124 YERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVN 2183
RPL RS A E + C + +IL+ V+
Sbjct: 548 --RPLS-------TRSGGATDEQERIFE---CSW---------------KILQSVV---- 576
Query: 2184 KLKVDPVELRGIGIQVSKLEHQS--KTLATIDTFFTNKGKPPDQLNNPRPGPSNSTITPG 2241
D +LRGIG Q KLEH+ + I+ FF K P Q P G S
Sbjct: 577 ---KDYKDLRGIGFQAQKLEHKDDKEKKGQIEGFF----KRPRQSTEPNSGAST------ 623
Query: 2242 PSNSTLP-PGPSNSTLPP 2258
S S LP P + PP
Sbjct: 624 -SQSRLPEKAPQPAARPP 640
Score = 89.0 bits (219), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 119/266 (44%), Gaps = 49/266 (18%)
Query: 1538 ASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDE 1597
A++ FL FY+ SRLH LS+ + K V +E D R K+S
Sbjct: 158 ANSMQFLPSFYSNSRLHFLSSSKANLKLLVQSAQENLDS--RSFTTSNPAKSS------- 208
Query: 1598 DLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRH--HPELQDEPVAVAHGKGNSSKVRE 1655
+ S+ PS + I+H+DMD FFVS + H L+ + VA++HGK + + E
Sbjct: 209 ---KLSSEQPS----KRFILHVDMDSFFVSASLSQAKHSHLRQKAVAISHGKSSINSTSE 261
Query: 1656 GVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYC 1715
+ + R+ GL NGM + A K CP L +PYDFE Y +++
Sbjct: 262 ---------------LASVNYIARQSGLRNGMILSAAKKLCPELITLPYDFELYNKITVI 306
Query: 1716 LYNLIASLTLNIEAVS----------LYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQ 1765
LY + S + ++AVS + N+S N ED E++ +L+ L RE+
Sbjct: 307 LYEIFLSHSDLLQAVSVDEALLDVSKIVANKSKDNTSNED---EIVFNLAEDIRNLVRER 363
Query: 1766 NTTEP---LAQDIICADSHTLVRTPS 1788
+ E + +I+ A T P+
Sbjct: 364 TSCEASVGIGSNILLAKVATRRAKPA 389
Score = 58.5 bits (140), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 19/134 (14%)
Query: 1321 YMEAKKRKLEEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMM 1380
Y+ K+ KL+ Q + + D +F G+ +NGYT PS +EL+ +++
Sbjct: 18 YIREKRIKLQNQND---SFDVHSQLFSGLVFHINGYTN-----------PSLQELRKIIL 63
Query: 1381 LHGG--IYHHYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYL 1438
+GG I+ S THII+SNL K + K K+ P+WI S+ KLL + ++
Sbjct: 64 QNGGKHIHQLINKSDVTHIISSNLTPRKRLEFK-NLKVCTPDWITQSVQQNKLLPWQNFI 122
Query: 1439 LYTGTDAKPLTKLL 1452
L D P T L
Sbjct: 123 L--DKDKTPQTLLF 134
>gi|358372217|dbj|GAA88822.1| DNA damage repair protein Mus42 [Aspergillus kawachii IFO 4308]
Length = 1166
Score = 194 bits (492), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 132/372 (35%), Positives = 191/372 (51%), Gaps = 71/372 (19%)
Query: 1898 IVSAVSCDEMYVD-CSQLLQ----------ELSLTPLQ-----FASYLRETIAKETGCTC 1941
IV +VS DE VD +Q L+ E SL Q A LR T+ KETGC
Sbjct: 467 IVQSVSIDEALVDITTQCLEAGGSDGRGISEGSLYREQARADEVADDLRATVKKETGCAV 526
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N L A++A +KAKP GQF L P + D++ N+ + DLPGVG+SL KL LG +
Sbjct: 527 SVGIGGNILLAKVALRKAKPAGQFQLKPDAVLDYIGNLTVQDLPGVGYSLGTKLEDLGVK 586
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ ++ RL +G K G+ ++++ RG D E+ E RKSVSAEVN+GIRF N
Sbjct: 587 IVKDVRELTRDRLTTSLGPKTGIKIWEYARGIDRTEVGNEVLRKSVSAEVNWGIRFVNQT 646
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ E F++ L E+ +RL E +KG+ +TLK+M R+ +AP E K LGHG CD KS +L
Sbjct: 647 QAEDFVRSLCQELHRRLVENLVKGQQLTLKVMRRALDAPLEPVKHLGHGKCDVFNKSVAL 706
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
+ +A+ LG KE + +
Sbjct: 707 GMAT-------------------DAADILG------------------------KEAVAM 723
Query: 2182 VNKLKVDPVELRGIGIQVSKLEH-QSKTLATIDTFFTN-KGKP---------PDQLNNPR 2230
+ + + P +LRG+G+Q++KL+H Q+ + + N K P PD L++PR
Sbjct: 724 LRSMNLSPGDLRGLGVQMTKLQHLQAGSPSKSSQRQLNFKASPVSKSIEHHDPDILDSPR 783
Query: 2231 PGPSNSTITPGP 2242
G + S + P P
Sbjct: 784 KGETES-VKPVP 794
Score = 141 bits (356), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 140/531 (26%), Positives = 230/531 (43%), Gaps = 132/531 (24%)
Query: 1321 YMEAKKRKLEEQ-FELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALM 1379
YM KK KL+ + E+ +++ + IF+GV VNGYT+ PS ++L L+
Sbjct: 40 YMRRKKIKLQNRDAEIRSSAANCPPIFRGVVAHVNGYTQ-----------PSLQDLHRLI 88
Query: 1380 MLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEW---------------- 1421
+ HGG + Y + +T THIIAS L K ++ + +I+KP W
Sbjct: 89 VSHGGGFLQYLNGKTDATHIIASALTPKKREEFR-RYRIVKPAWVVESVKAGRMLPWDSF 147
Query: 1422 -IVDSISAGKLLDHKKYLLYTG-----------TDAKPLTKLLQKSYF--ENTEA----P 1463
+VD + K+L + + TD T LQ++ EN + P
Sbjct: 148 RVVDEGQSQKVLRFDDGRMVSQMNSPRSGYREQTDTSWYTNQLQEAALSVENADVQRSPP 207
Query: 1464 CCSKSL--VETSSHTSTVSD--------SVDNTEESKSEAVNSEESKSEAAN---PIESK 1510
S+ L + S H + SD S+D + + + EE ++E + P+E +
Sbjct: 208 TRSEILNREDPSPHNGSQSDYSQFLSFASLDEVSRTPNISSPREEVRAETPDKQSPVEDE 267
Query: 1511 ----QTVKTKESKLETVNISAP--------KPQASS------------TKNAS--NEDFL 1544
+ K + + E ++ + P KP +S +N+S N F+
Sbjct: 268 DINTHSNKQENDQTEALSAALPLLRESFPTKPAMTSEEYNAQLLSDPHMRNSSVANPQFI 327
Query: 1545 GEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFS 1604
+FY++SRLHHLST + K + +++ L +
Sbjct: 328 QQFYSESRLHHLSTWKADLKAQLQ-----------------------SAAKEKSLSQVKR 364
Query: 1605 DNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFD 1664
P+P IMH+D DCFF +V PELQ +PVAVAHG G+ S++
Sbjct: 365 KKPAPGARR-YIMHVDFDCFFAAVSTLKRPELQGKPVAVAHGTGSGSEIAS--------- 414
Query: 1665 IYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLT 1724
R +G+ NGM++ AL+ CP LK+VPYDF Y+E S Y+ I S+
Sbjct: 415 ---------CNYEARAHGIKNGMWMKGALQTCPELKVVPYDFPAYEEASRKFYSAILSVD 465
Query: 1725 LNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
+++VS+ +E+ ++ + + D + L REQ + +A D+
Sbjct: 466 GIVQSVSI--DEALVDITTQCLEAGGSDGRGISEGSLYREQARADEVADDL 514
>gi|196000584|ref|XP_002110160.1| hypothetical protein TRIADDRAFT_53871 [Trichoplax adhaerens]
gi|190588284|gb|EDV28326.1| hypothetical protein TRIADDRAFT_53871 [Trichoplax adhaerens]
Length = 1014
Score = 193 bits (491), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 156/504 (30%), Positives = 237/504 (47%), Gaps = 129/504 (25%)
Query: 1321 YMEAKKRKLEEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMM 1380
Y + K KL++Q+ E +F GV+I +NGYT PSAE LK L+M
Sbjct: 23 YFDVKAVKLDDQYLAEQKKALVSNLFHGVSIHINGYTN-----------PSAEVLKQLIM 71
Query: 1381 LHGGIYHHYES-SRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYLL 1439
+HGG + Y S SR THIIASNLP KIK LK + ++KP WIVDSI GK+L YLL
Sbjct: 72 IHGGNFQQYYSKSRVTHIIASNLPDVKIKDLK-KEIVVKPSWIVDSIQNGKILPIYNYLL 130
Query: 1440 YTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSEAVNSEES 1499
G A ++ + TEA + S +++T+ S +N+ KS+ + ++
Sbjct: 131 VDGRSA-------SQTKIQFTEA---NSSGKNKNNNTNCNSSCSNNSTTVKSQNIKTDSP 180
Query: 1500 KSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTM 1559
K++ P N ++ +F+ +FY++SRLH+L+T
Sbjct: 181 KAKEKFP--------------------------PGIANTADPEFVSQFYSRSRLHYLATW 214
Query: 1560 GSMFKQYVN------ELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPE 1613
S +K Y + +L + D + + I ++ ++S + E+ E T + P S +
Sbjct: 215 KSEWKNYASTLDRNIDLDNRRDEIRQRIIDLKSSRSS--TIKHENHEVTVKEEPLQSSAD 272
Query: 1614 P-------------------VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKG------ 1648
V+MH+DMD FFVSV IR +L+ PVAV H KG
Sbjct: 273 QAIIESPNSQNTGRKNLFNRVVMHLDMDSFFVSVAIRDRADLRGLPVAVTHSKGKIKPAN 332
Query: 1649 --NSSKVREG---VDRQAEFDIYRQR--------------TMNRMGLN------------ 1677
N+ K++E + A ++ Y + N++ N
Sbjct: 333 LQNADKLQEKAEFIQEMAHWEDYHSKDKVKAEKASHDSPSKSNKINNNFISANDKESVEQ 392
Query: 1678 ------------TREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTL 1725
R YGL NGMF+G AL+ CP+L++VPY+F+ YKEVS LYN +AS T
Sbjct: 393 FSTSEIASCNYVARRYGLHNGMFMGRALQLCPHLRVVPYEFDKYKEVSKLLYNTLASYTF 452
Query: 1726 NIEAVSLYTNESFLNALPEDIRQE 1749
I A+S +E++++ DI Q+
Sbjct: 453 EIMAIS--CDEAYIDVT--DILQD 472
Score = 179 bits (453), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 128/223 (57%), Gaps = 33/223 (14%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ A+SCDE Y+D + +LQ+ T AS +R I +TGCTCS G G N L AR+AT+
Sbjct: 454 IMAISCDEAYIDVTDILQD-DYTIQDLASSIRHDIESKTGCTCSAGIGPNLLIARMATRI 512
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKPNGQ ++ P + F+ N L DLPGVG+ L KL L +TC DL+ ISL LQ +
Sbjct: 513 AKPNGQHYVDPANVLTFVANQSLKDLPGVGYRLHRKLKDLNVETCQDLRKISLPVLQRDF 572
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
G K GL LY++CRG D++ + +H+RKSVSAE+NYGIRF
Sbjct: 573 GTKTGLMLYQYCRGIDERPVQVDHERKSVSAEINYGIRF--------------------- 611
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+MK RS +A + K+LGHG CD KS++L
Sbjct: 612 --AEMKH---------RSPDASIKPWKYLGHGKCDNYAKSTTL 643
>gi|238501556|ref|XP_002382012.1| DNA damage repair protein Mus42, putative [Aspergillus flavus
NRRL3357]
gi|317142698|ref|XP_001819029.2| DNA damage repair protein Mus42 [Aspergillus oryzae RIB40]
gi|220692249|gb|EED48596.1| DNA damage repair protein Mus42, putative [Aspergillus flavus
NRRL3357]
Length = 1147
Score = 193 bits (491), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 136/397 (34%), Positives = 196/397 (49%), Gaps = 81/397 (20%)
Query: 1872 VWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCS-QLLQ----------ELSL 1920
+ EA Q+ S + S IV +VS DE +D + Q L+ E SL
Sbjct: 439 AYEEASQKFYSAILSL--------DGIVQSVSIDEALIDVTTQCLEAGGSDGRGISEGSL 490
Query: 1921 TPLQ-----FASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDF 1975
Q A LRE + +TGC S G G N LQA++A +KAKP GQF L P + DF
Sbjct: 491 YREQAKADEIAQSLREAVKHKTGCAVSIGIGGNILQAKVALRKAKPAGQFQLKPDAVLDF 550
Query: 1976 MLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDD 2035
+ + + DLPGVGHSL KL LG + D++ ++ ++L + +G K G ++ + RG D
Sbjct: 551 IGGLTVQDLPGVGHSLGGKLEELGVKLVKDVRELTREKLTSTLGPKLGAKIWDYARGIDR 610
Query: 2036 KELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVR 2095
E+ E RKSVSAEVN+GIRF N + + F++ L E+ +RL E +KGK +TLK+M R
Sbjct: 611 TEVGSEVMRKSVSAEVNWGIRFVNQAQADDFVQSLCEELHRRLVENLVKGKQLTLKVMRR 670
Query: 2096 SAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVC 2155
+A+AP E K LGHG CD KS L + A++ LG
Sbjct: 671 AADAPLEPVKHLGHGKCDVFNKSVILGVAT-------------------NAAETLG---- 707
Query: 2156 DYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSKLEH-QSKTLATID- 2213
KE + ++ L + P +LRG+G+Q++KLE + + +D
Sbjct: 708 --------------------KEAVSMLRSLAITPGDLRGLGVQMTKLEPLKPGNMGNLDN 747
Query: 2214 -----TFFT-------NKGKPPDQLNNPRPGPSNSTI 2238
F T +K PD L +PR G ++S I
Sbjct: 748 SQQQLNFKTSPARRNIHKSHDPDDLASPRKGETDSVI 784
Score = 155 bits (391), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 143/531 (26%), Positives = 217/531 (40%), Gaps = 130/531 (24%)
Query: 1321 YMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALM 1379
YM KK KL+ E+ ++ IF+GV VNGYT+ PS ++L L+
Sbjct: 40 YMRRKKIKLQNLDAEIRSSVSDCPPIFRGVVAHVNGYTQ-----------PSLQDLHRLI 88
Query: 1380 MLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY 1437
+ HGG + Y +T THIIAS+L K ++ + +I+KP W+V+SI AG++L +
Sbjct: 89 VSHGGGFLQYLDGKTAATHIIASSLTPKKREEFR-RYRIVKPAWVVESIKAGRILPWDSF 147
Query: 1438 LLYTGTDAKPLTKLLQKSYFENTEAPCCS------------------------------- 1466
+ A+ + K T P S
Sbjct: 148 RVVDEGYAQKVLKFDNGRILSQTNCPPSSYKDQAFPSPYTSRAKELDIVDDVNMQPSVSI 207
Query: 1467 ---KSLVETSSHTSTVSD--------SVDNT-------EESKSEAVNSEESKSEAANPIE 1508
S +S ++ SD S D T E K +A + E S+ A
Sbjct: 208 AEPHSAAGSSLKATSQSDYGDFPSFSSTDETNKIPLPEEPQKDQARDHESRLSDTARNPS 267
Query: 1509 SKQTVKTKESKLETVNISAPKPQASS------------TKNAS--NEDFLGEFYNKSRLH 1554
+ K+K + S KP SS +N+S N DFL +FY +SRLH
Sbjct: 268 RSMSPKSKAIVKPASSPSPAKPDMSSEAYNAQLLSDPRMRNSSVVNPDFLQQFYKESRLH 327
Query: 1555 HLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEP 1614
HLST WK L +E P+ + P
Sbjct: 328 HLST----------------------------WKAELKAQLQAATKEKLQSQPAKKKSAP 359
Query: 1615 ----VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRT 1670
IMH+D DCFF +V +P + +PVAVAHG G+ S++
Sbjct: 360 GARRYIMHVDFDCFFAAVSTLRNPGYEGKPVAVAHGTGSGSEIAS--------------- 404
Query: 1671 MNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAV 1730
R +G+ NGM++ AL+ CP+LK++PYDF Y+E S Y+ I SL +++V
Sbjct: 405 ---CNYAARAHGVKNGMWMKGALQACPDLKVLPYDFPAYEEASQKFYSAILSLDGIVQSV 461
Query: 1731 SLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSH 1781
S+ +E+ ++ + + D + L REQ + +AQ + A H
Sbjct: 462 SI--DEALIDVTTQCLEAGGSDGRGISEGSLYREQAKADEIAQSLREAVKH 510
Score = 41.2 bits (95), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 31/141 (21%)
Query: 1734 TNESFLNALPEDIRQEVLDD------LSRQQSVLSREQN---TTEPLAQDIICADSHTLV 1784
+E FL ALPEDIR+EVL++ L R S R QN +EP A L
Sbjct: 965 VSEEFLAALPEDIRREVLEEQKRSRMLQRPGSAAQRIQNKPSASEP------SAPQKRLC 1018
Query: 1785 RTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREW---MCESQPEPSDIEMFSEY 1841
P P T TS LS +L ++R + W + P D+E + Y
Sbjct: 1019 LPPLPE---------RPTFTSQKLS---NLSDLRDAVSAWHATFADDGPFDEDVESLARY 1066
Query: 1842 LSNLV-EERHLNPIVILLRFL 1861
+ +V +E+ ++ V ++R+L
Sbjct: 1067 VKRVVIDEKDVDKAVSVVRWL 1087
>gi|83766887|dbj|BAE57027.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1087
Score = 193 bits (490), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 136/397 (34%), Positives = 196/397 (49%), Gaps = 81/397 (20%)
Query: 1872 VWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCS-QLLQ----------ELSL 1920
+ EA Q+ S + S IV +VS DE +D + Q L+ E SL
Sbjct: 439 AYEEASQKFYSAILSL--------DGIVQSVSIDEALIDVTTQCLEAGGSDGRGISEGSL 490
Query: 1921 TPLQ-----FASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDF 1975
Q A LRE + +TGC S G G N LQA++A +KAKP GQF L P + DF
Sbjct: 491 YREQAKADEIAQSLREAVKHKTGCAVSIGIGGNILQAKVALRKAKPAGQFQLKPDAVLDF 550
Query: 1976 MLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDD 2035
+ + + DLPGVGHSL KL LG + D++ ++ ++L + +G K G ++ + RG D
Sbjct: 551 IGGLTVQDLPGVGHSLGGKLEELGVKLVKDVRELTREKLTSTLGPKLGAKIWDYARGIDR 610
Query: 2036 KELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVR 2095
E+ E RKSVSAEVN+GIRF N + + F++ L E+ +RL E +KGK +TLK+M R
Sbjct: 611 TEVGSEVMRKSVSAEVNWGIRFVNQAQADDFVQSLCEELHRRLVENLVKGKQLTLKVMRR 670
Query: 2096 SAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVC 2155
+A+AP E K LGHG CD KS L + A++ LG
Sbjct: 671 AADAPLEPVKHLGHGKCDVFNKSVILGVAT-------------------NAAETLG---- 707
Query: 2156 DYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSKLEH-QSKTLATID- 2213
KE + ++ L + P +LRG+G+Q++KLE + + +D
Sbjct: 708 --------------------KEAVSMLRSLAITPGDLRGLGVQMTKLEPLKPGNMGNLDN 747
Query: 2214 -----TFFT-------NKGKPPDQLNNPRPGPSNSTI 2238
F T +K PD L +PR G ++S I
Sbjct: 748 SQQQLNFKTSPARRNIHKSHDPDDLASPRKGETDSVI 784
Score = 155 bits (391), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 143/531 (26%), Positives = 217/531 (40%), Gaps = 130/531 (24%)
Query: 1321 YMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALM 1379
YM KK KL+ E+ ++ IF+GV VNGYT+ PS ++L L+
Sbjct: 40 YMRRKKIKLQNLDAEIRSSVSDCPPIFRGVVAHVNGYTQ-----------PSLQDLHRLI 88
Query: 1380 MLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY 1437
+ HGG + Y +T THIIAS+L K ++ + +I+KP W+V+SI AG++L +
Sbjct: 89 VSHGGGFLQYLDGKTAATHIIASSLTPKKREEFR-RYRIVKPAWVVESIKAGRILPWDSF 147
Query: 1438 LLYTGTDAKPLTKLLQKSYFENTEAPCCS------------------------------- 1466
+ A+ + K T P S
Sbjct: 148 RVVDEGYAQKVLKFDNGRILSQTNCPPSSYKDQAFPSPYTSRAKELDIVDDVNMQPSVSI 207
Query: 1467 ---KSLVETSSHTSTVSD--------SVDNT-------EESKSEAVNSEESKSEAANPIE 1508
S +S ++ SD S D T E K +A + E S+ A
Sbjct: 208 AEPHSAAGSSLKATSQSDYGDFPSFSSTDETNKIPLPEEPQKDQARDHESRLSDTARNPS 267
Query: 1509 SKQTVKTKESKLETVNISAPKPQASS------------TKNAS--NEDFLGEFYNKSRLH 1554
+ K+K + S KP SS +N+S N DFL +FY +SRLH
Sbjct: 268 RSMSPKSKAIVKPASSPSPAKPDMSSEAYNAQLLSDPRMRNSSVVNPDFLQQFYKESRLH 327
Query: 1555 HLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEP 1614
HLST WK L +E P+ + P
Sbjct: 328 HLST----------------------------WKAELKAQLQAATKEKLQSQPAKKKSAP 359
Query: 1615 ----VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRT 1670
IMH+D DCFF +V +P + +PVAVAHG G+ S++
Sbjct: 360 GARRYIMHVDFDCFFAAVSTLRNPGYEGKPVAVAHGTGSGSEIAS--------------- 404
Query: 1671 MNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAV 1730
R +G+ NGM++ AL+ CP+LK++PYDF Y+E S Y+ I SL +++V
Sbjct: 405 ---CNYAARAHGVKNGMWMKGALQACPDLKVLPYDFPAYEEASQKFYSAILSLDGIVQSV 461
Query: 1731 SLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSH 1781
S+ +E+ ++ + + D + L REQ + +AQ + A H
Sbjct: 462 SI--DEALIDVTTQCLEAGGSDGRGISEGSLYREQAKADEIAQSLREAVKH 510
>gi|358253835|dbj|GAA53834.1| DNA repair protein REV1, partial [Clonorchis sinensis]
Length = 859
Score = 193 bits (490), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 163/487 (33%), Positives = 233/487 (47%), Gaps = 84/487 (17%)
Query: 1317 KKGGYMEAKKRKLEEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELK 1376
++GGYM AKK KLE QF E + + IF GV+I+VNGYT P A EL+
Sbjct: 20 EQGGYMRAKKSKLENQFRPEKET-LQSNIFHGVSIYVNGYTD-----------PPALELR 67
Query: 1377 ALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDS-------ISA 1428
L+ HGG Y +Y SR THIIA+ LP K+ KL KI+ WIV+S S
Sbjct: 68 DLIRAHGGQYRAYYSRSRVTHIIATRLPMGKVNKLT-DQKIVSSAWIVESPPTTMTPTSN 126
Query: 1429 GKLLDHKKYLLYTGTDAKPLTKLL--------QKSYFENTEAPCCSKSLVETSSH---TS 1477
KL+ H+ + A LL +K NT S + S H S
Sbjct: 127 NKLMPHRP-----SSGATNRVALLAAYSKADKRKQATANTSLLSLSNTFSSPSPHPINNS 181
Query: 1478 TVSDSVDNTEESKS--------------EAVNSEESKSEAANP-------IESKQ----- 1511
+ V+N+ S+S +A S S + P I KQ
Sbjct: 182 LLVVDVENSRSSESPKGKTGRRLQQMRLDACLSPSKTSTGSVPHLKPTGAISLKQLLQGS 241
Query: 1512 --TVKTKESKLETVNISAPKPQA--SSTKNASNEDF-LGEFYNKSRLHHLSTMGSMFKQY 1566
+V +TV+ ++P+ Q S +++ ++ D L FY +SRLHHLS+ + +
Sbjct: 242 VPSVPINTPNQKTVDSNSPENQTTHSPSQHPTDTDAQLATFYARSRLHHLSSWANELRDL 301
Query: 1567 VNELREKHDGVFRGIEAIRKWKTS--LGITEDEDLEETF--SDNPSPSEPEP----VIMH 1618
V +LR+ G+ +WK S L T D + T S S ++ P V H
Sbjct: 302 VQQLRDDPAYCESGLG--EEWKRSVILQSTNDPSVVVTLRASQIRSCTKHTPPQHRVYFH 359
Query: 1619 IDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNT 1678
IDMDCFFVSV +R+ PEL+D+PVA+ H +S + + R++ ++ +
Sbjct: 360 IDMDCFFVSVSLRNRPELKDKPVAITHAS-SSGDDKAPIHRRS--GVHSMSEVASCSYTA 416
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS---LYTN 1735
R+ G+ NGM +G A + CP L +PYDFE YKEVS LY ++ TLNI+AVS LY +
Sbjct: 417 RQAGIRNGMLLGQARQLCPELITLPYDFEAYKEVSEVLYRTVSHFTLNIQAVSCDELYAD 476
Query: 1736 ESFLNAL 1742
+ L +L
Sbjct: 477 CTDLLSL 483
Score = 151 bits (381), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 122/421 (28%), Positives = 193/421 (45%), Gaps = 106/421 (25%)
Query: 1875 EAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLL------------------Q 1916
EAY+E+ + + H + + AVSCDE+Y DC+ LL Q
Sbjct: 445 EAYKEVSEVLYRTVSHFTLN----IQAVSCDELYADCTDLLSLDNTGSGSNCHQANLSGQ 500
Query: 1917 ELSLT-----PLQFASYLRETIAKETG-CTCSTGFGSNKLQARLATKKAKPNGQFHLTP- 1969
LT PL + LR + + TG CT S GFGS+KL ARLATKKAKPNGQ
Sbjct: 501 NACLTQRIVNPLLLGARLRSLVEERTGGCTASIGFGSSKLLARLATKKAKPNGQAWFLGI 560
Query: 1970 ------------QIISDFMLNIPLSDLP--GVGHSLLFKL-NSLGAQTCGDL-QNISLKR 2013
I + + LP G+G L+ +L + TCG+L ++++ +
Sbjct: 561 SGDQNPGDCAWRWAIEGLNSSASETSLPTAGIGRVLVMRLATAFNVTTCGELMRSVARGQ 620
Query: 2014 LQNEVGNKNGLTLYKHCRGEDD-KELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAG 2072
L + VG K G LY CRG D +L + KSVSA +NYGIR Q +ME ++ L
Sbjct: 621 LIDLVGRKTGERLYWLCRGRDPCDQLHVQKPSKSVSACMNYGIRLQTLADMEKLVRSLTT 680
Query: 2073 EVEKRLEEVKM----------KGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLP 2122
E+ R+ K+ +G+ +T+++ +R+ AP+E++KF+GHG+C
Sbjct: 681 ELVSRMSNTKLTQDSSVRGGVRGQNLTVRVFIRAPNAPQESAKFMGHGIC---------- 730
Query: 2123 IYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIV 2182
++AS+ + SLP + I + + ++
Sbjct: 731 ---------------------KKASRMI------------SLPEATADPHIIQRFTMSVL 757
Query: 2183 NKLKVDPVELRGIGIQVSKLEHQSKTLATIDTFFTNKGKPPDQLNNPRPGPSNSTITPGP 2242
+L D +LRG+G+Q+++L +++T+D + P +N P P+ ST+
Sbjct: 758 RQLCPDVKDLRGLGLQMNRL-----SMSTVDRCVNKQLAKPS--SNTLPPPTASTVNSAS 810
Query: 2243 S 2243
S
Sbjct: 811 S 811
>gi|403417832|emb|CCM04532.1| predicted protein [Fibroporia radiculosa]
Length = 1211
Score = 192 bits (489), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 127/348 (36%), Positives = 176/348 (50%), Gaps = 63/348 (18%)
Query: 1881 LSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLL----------QELSLTPL----QFA 1926
L C M H + + AVS DE +D + + Q+ S +P+ +FA
Sbjct: 541 LQCYTVLMAH-----ADDLQAVSVDEALIDVTSSVARIRREISRSQDPSSSPVDPAKEFA 595
Query: 1927 SYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPG 1986
+R + K TGC S G N + ARLA++KAKP G FH+ P + + + + + DL G
Sbjct: 596 EAIRAQVKKVTGCEVSVGISYNIMLARLASRKAKPAGSFHIIPDDVPELLAPLDIDDLHG 655
Query: 1987 VGHSLLFK-LNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRK 2045
G++ K L LGA G+L S L +G G TLYK RG D+++L + RK
Sbjct: 656 FGYAARQKALEKLGATKLGELVKKSKATLCEALGKGMGETLYKALRGVDERKLESDKPRK 715
Query: 2046 SVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASK 2105
SVS ++NYGIRF+NN++ E F+ Q+A EV +RL + M G+ +TLK+M R+A+AP EA K
Sbjct: 716 SVSCDINYGIRFENNEQAEAFISQMAEEVARRLNNIGMIGRSLTLKIMKRAADAPVEAPK 775
Query: 2106 FLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREAS--KFLGHGVCDYITKSSS 2163
FLGHG+CD K + PLI A R S K +G
Sbjct: 776 FLGHGICDTFNKQT-------PLI----------APGSRATSDRKVIGE----------- 807
Query: 2164 LPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSKLEHQSKTLAT 2211
A ++LK F DP ELRGI IQ+ KLE S+ AT
Sbjct: 808 ------HAWRLLKSFHF-------DPKELRGISIQIQKLEKNSEVSAT 842
Score = 156 bits (395), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 136/514 (26%), Positives = 231/514 (44%), Gaps = 100/514 (19%)
Query: 1319 GGYMEAKKRKLE----EQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEE 1374
G YM K+ KL+ E + + +S IF+G+ +++NG+T+ PS +E
Sbjct: 107 GEYMARKRAKLQIQNTEMIDEDNDSSPTATIFRGLQVYINGWTE-----------PSVQE 155
Query: 1375 LKALMMLHGGIYHHY--ESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL 1432
L+ L++ HGGIYH Y + S THI+ +L KI++ K K+++PEW+V+S AG LL
Sbjct: 156 LRELIIQHGGIYHAYLDKKSLVTHILTCSLTPAKIREFK-HMKVVRPEWLVESARAGHLL 214
Query: 1433 DHKKYLLYTG--TDAKPLTKLLQKSYFENTEA-----PCCSKSL-VETSSHTSTVSDSVD 1484
+ ++ G T+ ++ Q+S F+ + P +K+ V T S V D D
Sbjct: 215 PWQDFIFRPGERTEQSQGKRIGQQSLFDKFVSQARVRPSEAKAPPVATQRAPSNVQDDDD 274
Query: 1485 NTEE-------SKSEAVNSEESKSEAANPIESKQTVKTKESKLE--------TVNISAP- 1528
+ E +S ++ ++ ++ P SK T + E + S P
Sbjct: 275 SVEGPPTVPLYGRSPSITPPQTPTKERQPHISKPLFTTDPTTPEHASRVVGYAAHTSNPI 334
Query: 1529 ------KPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREK--------- 1573
P + ++ DF+ +Y SRLHHLST + K V E +E
Sbjct: 335 AERAMANPAWRAAHTSAAPDFIEGYYKNSRLHHLSTWKAELKNLVAEAQEHIENGTVSSW 394
Query: 1574 ---HDGVFRGIEAIRKWKTSLGITEDEDLEETFS-------DNPS---------PSEPEP 1614
DG + I + G+ D+ EE S PS + +
Sbjct: 395 NHLPDGTETAVGKIMQQNIG-GLGRDDPREEDVSMRGAHLVAGPSNKVKGKERAAAAEQS 453
Query: 1615 VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRM 1674
VIMH D D FFVS G+ P L+ +PV V H +GN G +E +
Sbjct: 454 VIMHCDFDSFFVSAGLLDRPHLRGKPVVVCHSQGNQG----GGASTSE--------IASA 501
Query: 1675 GLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYT 1734
R++G+ +GM + A + CP + +PY+F+ YK++S Y ++ + +++AVS+
Sbjct: 502 SYEARKFGIKSGMSLQQARRLCPTVLTIPYEFQRYKKLSLQCYTVLMAHADDLQAVSV-- 559
Query: 1735 NESFLNALPEDIRQEVLDDLSRQQSVLSREQNTT 1768
+E+ ++ V ++R + +SR Q+ +
Sbjct: 560 DEALID---------VTSSVARIRREISRSQDPS 584
>gi|170093828|ref|XP_001878135.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646589|gb|EDR10834.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1152
Score = 192 bits (489), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 140/386 (36%), Positives = 182/386 (47%), Gaps = 71/386 (18%)
Query: 1894 SESKIVSAVSCDEMYVDCSQLLQEL-SLTPLQ---------FASYLRETIAKETGCTCST 1943
S + + AVS DE +D + + +L S L+ FA +R I K T C S
Sbjct: 477 SHADDLQAVSVDEALIDVTSTVTQLRSHVGLEGSPHDPAKDFAETIRAQIRKATSCEISI 536
Query: 1944 GFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNS-LGAQT 2002
G N L ARLAT++AKP G FHL P + DF+ + ++DL G G S K LG T
Sbjct: 537 GISHNILLARLATRRAKPGGSFHLVPLDVPDFLAPLDIADLHGFGRSTKQKAQEKLGVTT 596
Query: 2003 CGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQE 2062
G+L S L + +G G TLY RG DDK+L + RKSVS E+NYGIRF+NN++
Sbjct: 597 LGELAKKSKGVLIDALGKATGETLYDAVRGIDDKKLESDKPRKSVSCEINYGIRFENNEQ 656
Query: 2063 METFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLP 2122
E F+ Q+A EV+KRL+ + M G+ IT+K+M R AP E KFLGHG CD K
Sbjct: 657 AEAFVHQMAAEVKKRLDAIDMVGRSITMKVMKRDPTAPVEPPKFLGHGSCDLFNK----- 711
Query: 2123 IYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLF-I 2181
+ PLI P G D QI+ E + +
Sbjct: 712 --QIPLI------------GPG------GRATSD---------------EQIIGEHAWRL 736
Query: 2182 VNKLKVDPVELRGIGIQVSKLEHQSKTLATIDTFFTNKGKPPDQLNNP--RPGPSNSTIT 2239
+ DP ELRG+GIQV KLE S T PP Q P R GP+
Sbjct: 737 LKSFNFDPKELRGLGIQVQKLESASSTAHA----------PPGQAMLPFKRKGPAEPA-- 784
Query: 2240 PGPSNSTLPPGPSNSTLPPGPSNSTL 2265
GPS + P PP N+ +
Sbjct: 785 -GPSTTE----PEIRVQPPSQGNNDI 805
Score = 161 bits (408), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 125/433 (28%), Positives = 193/433 (44%), Gaps = 58/433 (13%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKAL 1378
G YM K+ KL+ Q E D + IF+G++I++NGYT PS ++L+ L
Sbjct: 94 GEYMRRKRAKLQIQNEGLKEPDGQSEIFKGLSIYINGYT-----------TPSVQDLRQL 142
Query: 1379 MMLHGGIYHHY--ESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKK 1436
++ HGG++ Y + + THII +L K+++ K K+++PEW+V+S AG LL
Sbjct: 143 IVKHGGVFQPYLDKKALVTHIITCSLTPAKLREFK-HMKVVRPEWLVESAEAGVLLPWSN 201
Query: 1437 YLLYTG--TDAKPLTKLLQKSYFENTEAPCCSKSLVE------TSSHTSTVSDSVDNTEE 1488
YL +A K Q + + P S + T T V N
Sbjct: 202 YLYVQSERPEASQGAKNNQTTLLNGMKVPFKSSTTTTFKVPQTPQPKTPTKPQPVANKSP 261
Query: 1489 SKS-EAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEF 1547
SK EAV S +NP+ ++ K T AP DF+ +
Sbjct: 262 SKDPEAVELPRYASSTSNPLATRVMANADWRKAHTS--VAP-------------DFIEGY 306
Query: 1548 YNKSRLHHLSTMGSMFKQYVNELREKHDGVFRG---IEAIRKWKTSLGITEDEDLEETFS 1604
Y SRLHHLST + K V E E+ + G + I +T++ + E + + +
Sbjct: 307 YKNSRLHHLSTWKAELKGLVQEAMERAEAGAGGTGHVGKIDSEETNVSMRGAELVMRSPA 366
Query: 1605 -----DNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDR 1659
+ + E VIMH D DCFFVS G+ PE + +PV V H +G
Sbjct: 367 AKRKGKGKAVGDQERVIMHCDFDCFFVSAGLVSRPEHKGKPVVVCHSQGTQGGASS---- 422
Query: 1660 QAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNL 1719
+ R++G+ NGM + A K CP + +PY+FE YK+ S Y +
Sbjct: 423 --------TSEIASSSYEARKFGIKNGMSLQQARKLCPGIITIPYEFERYKQFSLLFYTV 474
Query: 1720 IASLTLNIEAVSL 1732
+ S +++AVS+
Sbjct: 475 LMSHADDLQAVSV 487
>gi|212529044|ref|XP_002144679.1| DNA damage repair protein Mus42, putative [Talaromyces marneffei ATCC
18224]
gi|210074077|gb|EEA28164.1| DNA damage repair protein Mus42, putative [Talaromyces marneffei ATCC
18224]
Length = 1167
Score = 192 bits (488), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 120/348 (34%), Positives = 178/348 (51%), Gaps = 67/348 (19%)
Query: 1872 VWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCS-QLLQ----------ELSL 1920
+ EA ++ C+ + +V +VS DE +D + Q LQ E S+
Sbjct: 443 AYEEASRQFYDCILAV--------DGVVQSVSIDEALIDVTMQCLQAGGSDGRGISEGSI 494
Query: 1921 TPLQ-----FASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDF 1975
Q A+ LR I K+TGC S G G N LQA++A +KAKP GQ+ L P + DF
Sbjct: 495 YREQAKADEIATSLRHAIKKKTGCAISVGVGGNILQAKVALRKAKPAGQYQLKPDEVLDF 554
Query: 1976 MLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDD 2035
+ N+ + DLPGV +SL KL +G + D+++++ +RL + +G K G LY + RG D
Sbjct: 555 IGNLTVQDLPGVAYSLGGKLEEIGVKFVKDMRDLTRERLVSHLGPKTGAKLYDYARGIDK 614
Query: 2036 KELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVR 2095
E+ + RKSVSAE+N+GIRF N + E F++ L+ E+ +RL E +KGK +T+++M R
Sbjct: 615 AEVGVQTMRKSVSAEINWGIRFTNQTQAEEFVQSLSEELHRRLVENLVKGKQLTIRVMRR 674
Query: 2096 SAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVC 2155
SA+AP E K LGHG CD KS L I
Sbjct: 675 SADAPLEPVKHLGHGKCDIFNKSVLLGI-------------------------------- 702
Query: 2156 DYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSKLE 2203
T +S + I KE + ++ P +LRG+G+Q++KLE
Sbjct: 703 --ATNASDI---------ISKEAIAMLRSFGFTPGDLRGLGVQMTKLE 739
Score = 155 bits (391), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 140/532 (26%), Positives = 227/532 (42%), Gaps = 140/532 (26%)
Query: 1321 YMEAKKRKLEEQ-FELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALM 1379
Y KK KL+ + + A+S++ IF+GV VNGYT+ P+ +L L+
Sbjct: 40 YFRRKKLKLQNRDAHIRASSENNPPIFRGVVAHVNGYTQ-----------PTLNDLHHLI 88
Query: 1380 MLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY 1437
+ HGG + Y +T THIIAS+L K ++ + +++KP W+VDSI AG+LL Y
Sbjct: 89 VSHGGGFLQYLDGKTSATHIIASSLTPKKREEFR-RYRVVKPAWVVDSIKAGRLLPWDNY 147
Query: 1438 -LLYTGTDAKPL----------TKLLQKSYFENTE--------APCCSKSLVETSSHTST 1478
++ G K L T ++SY + TE KS E + +
Sbjct: 148 RVVDEGASQKVLRFENGALQTETNEFERSYKDQTENSWYNSQFGDAAQKSQQEVVAASPV 207
Query: 1479 -----VSDSVDNT-------------------------------EESKSEAV------NS 1496
++ S N+ EE+ + AV N
Sbjct: 208 NEKFDIASSFPNSNADTDYGDFPSLASPEATTEGPPDDQNLLSIEENPAVAVEDPEEGNE 267
Query: 1497 EESKSEAANPIESKQTVK--------TKESKLETVNISAPKPQASSTKNASNEDFLGEFY 1548
SE A + Q V+ + V +S P+ + SS N DFL ++Y
Sbjct: 268 NREASEGARDLVDAQLVRETIPVKPGMSSEEYNAVLLSDPRMRKSSV---VNPDFLHQYY 324
Query: 1549 NKSRLHHLST----MGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFS 1604
+SRLHHLST + + + E E + + R + R++
Sbjct: 325 RESRLHHLSTWKAELKAKLQASTQERYESNQNIKRHLPGARRY----------------- 367
Query: 1605 DNPSPSEPEPVIMHIDMDCFFVSVGI-RHHPELQDEPVAVAHGKGNSSKVREGVDRQAEF 1663
I+H+D D FF +V I +HHPEL D+PVA+AHG G+ S++
Sbjct: 368 -----------ILHVDFDSFFAAVSINKHHPELVDKPVAIAHGTGSGSEIAS-------- 408
Query: 1664 DIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASL 1723
R +GL NGM++ AL +CP LK++PYDF Y+E S Y+ I ++
Sbjct: 409 ----------CNYPARAFGLKNGMWMKGALDRCPELKVLPYDFPAYEEASRQFYDCILAV 458
Query: 1724 TLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
+++VS+ +E+ ++ + ++ D + + REQ + +A +
Sbjct: 459 DGVVQSVSI--DEALIDVTMQCLQAGGSDGRGISEGSIYREQAKADEIATSL 508
>gi|295673426|ref|XP_002797259.1| DNA polymerase IV [Paracoccidioides sp. 'lutzii' Pb01]
gi|226282631|gb|EEH38197.1| DNA polymerase IV [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1160
Score = 192 bits (488), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 116/323 (35%), Positives = 171/323 (52%), Gaps = 61/323 (18%)
Query: 1898 IVSAVSCDEMYVDCSQL-----------LQELSLTPLQ-----FASYLRETIAKETGCTC 1941
IV +VS DE VD + + + E S+ Q A LR+++ ++TGC
Sbjct: 459 IVQSVSIDEALVDITNICLDAGGSDGIGISEGSIYREQAKADEIAQKLRDSVKEQTGCNI 518
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N LQAR+A +KAKP GQF L P + DF+ + + DLPGV HSL KL LG
Sbjct: 519 SVGIGGNVLQARVALRKAKPAGQFQLKPDAVQDFIGELTVKDLPGVAHSLGGKLEELGVV 578
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ +S ++L + +G K G L+ + RG D+ E+ + RKSVSAE+++GIRF +
Sbjct: 579 FVKDIRELSKEKLTSSLGPKTGAKLWNYARGIDNTEVGIQVPRKSVSAEISWGIRFVSQT 638
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ E F++ L E+ +RL E +KGK +T+++M RSA+AP E +K LGHG CD KS +L
Sbjct: 639 QAEEFVQSLCDELHRRLVENLVKGKQLTMRIMKRSADAPLEPAKHLGHGKCDTFNKSVAL 698
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL-KEVLF 2180
GV + AS I+ +E +
Sbjct: 699 -------------------------------GVA-------------TNASDIIGREAIS 714
Query: 2181 IVNKLKVDPVELRGIGIQVSKLE 2203
I+ K P +LRG+G+Q++KLE
Sbjct: 715 ILRGFKFSPGDLRGLGVQMTKLE 737
Score = 158 bits (399), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 137/532 (25%), Positives = 233/532 (43%), Gaps = 138/532 (25%)
Query: 1319 GGYMEAKKRKLEEQ-FELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G Y KK KL+ + E+ A+S + IF+GV VNGYT+ PS +L
Sbjct: 38 GDYFRRKKLKLQNRDSEIRASSPNNPPIFRGVVAHVNGYTQ-----------PSLNDLHR 86
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHK 1435
L++ HGG + Y +T THI++S L K ++ + +I+KP W+V+S+ AG+LL
Sbjct: 87 LIVSHGGGFLQYLDGKTSATHILSSALTPKKREEFR-KYRIVKPGWVVESVKAGRLLPWD 145
Query: 1436 KY----------LLYTGTDAKPLTK--LLQKSYFENTEAPCCSKSLVETSSHT-----ST 1478
K+ +L G D + ++ + +SY ++TE + + S+ +T
Sbjct: 146 KFRVVDEGQSQKVLTFGGDGQVQSQANIQFRSYRDHTETSWYTSQIKSGSADITEKMETT 205
Query: 1479 VSDSVDNTEESKS------------------------------EAVNSEESKSEAANPIE 1508
V+ S TE++ + EA+ + E N
Sbjct: 206 VAISPSGTEDTAAISPSSHDPNLAVESDLGNDMSPTRSDSIPDEAIAGSDPHGELGNTPS 265
Query: 1509 SKQTVKTKESKL-------------------ETVN---ISAPKPQASSTKNASNEDFLGE 1546
++++ ++E+K E N +S P Q SS N+ F+ +
Sbjct: 266 QRKSLISEETKRQGPVYDLQNHVDTKSSMTSEMYNAKLLSDPHYQNSSVVNSK---FIQQ 322
Query: 1547 FYNKSRLHHLSTMGSMFKQYVNELREKHDGV---FRGIEAIRKWKTSLGITEDEDLEETF 1603
FY +SRLHHLST + K + + D R + +R++
Sbjct: 323 FYCESRLHHLSTWKAELKAQIQSAAQDKDLTRKPARHVPGVRRY---------------- 366
Query: 1604 SDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEF 1663
+MH+D D FF +V IR HPEL D+PVA+AHG G S++
Sbjct: 367 ------------VMHVDFDSFFAAVSIRKHPELADQPVAIAHGTGPGSEIAS-------- 406
Query: 1664 DIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASL 1723
R +G+ NGM++ AL+ CP+LK++PYDF Y+E S Y+++ S+
Sbjct: 407 ----------CNYPARSFGIKNGMWMKGALQMCPHLKVLPYDFAAYEEASRNFYDVLLSI 456
Query: 1724 TLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
+++VS+ +E+ ++ + D + + + REQ + +AQ +
Sbjct: 457 DGIVQSVSI--DEALVDITNICLDAGGSDGIGISEGSIYREQAKADEIAQKL 506
>gi|162532544|gb|ABY16683.1| topoisomerase II [Fusarium oxysporum f. sp. ciceris]
Length = 243
Score = 192 bits (488), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/277 (41%), Positives = 142/277 (51%), Gaps = 82/277 (29%)
Query: 325 EVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFG 384
EV A SD FQQVSFVNSIATT GG HV+ + D + + +++ + KK K
Sbjct: 1 EVGFAVSDGTFQQVSFVNSIATTSGGTHVNYIADQVTEALLKALNKKRK----------- 49
Query: 385 NKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT 444
G ALK +KNHI+IF+NC I NP F SQTKE MT
Sbjct: 50 -------------------------GHALKQSHLKNHIFIFVNCYINNPAFTSQTKEQMT 84
Query: 445 LQKGSFGSTCV-------------------------------------------PKLEDA 461
+ FGS C KL +A
Sbjct: 85 TKPSQFGSKCKLGEDFLKKIAKSDALQNILDFAEKKADKMLAKGDGNKRSRVNNAKLVEA 144
Query: 462 NDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILEN 521
N AGT+ +CTLILTEGDSAK LAVSG ++ D+ GVFPLRGKLLNVR+A+ QI++N
Sbjct: 145 NFAGTRRGHECTLILTEGDSAKGLAVSGRAILDPDRIGVFPLRGKLLNVRDASVDQIMKN 204
Query: 522 AEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTD 558
AEI N+ + LGL++ + YT D K LRYG LMIM D
Sbjct: 205 AEIQNIKQFLGLKHKQTYT---DTKNLRYGHLMIMAD 238
>gi|401888160|gb|EJT52125.1| hypothetical protein A1Q1_06663 [Trichosporon asahii var. asahii CBS
2479]
Length = 1238
Score = 192 bits (488), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/321 (36%), Positives = 168/321 (52%), Gaps = 52/321 (16%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTP-----------LQFASYLRETIAKETGCTCSTGFGS 1947
+ AVS DE ++ + + + P + A +R I TGC S G
Sbjct: 588 LEAVSIDEALLEVTGAVTAREMAPDEAEAISPDPAVCVAEQIRSDIRDATGCEVSIGISH 647
Query: 1948 NKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL-NSLGAQTCGDL 2006
N L ARLAT+KAKP G + LT + + + + LP VGHS+ KL ++ G CGDL
Sbjct: 648 NILLARLATRKAKPGGVYRLTTGNCDELLSELDVKSLPSVGHSMQAKLQDAFGTTKCGDL 707
Query: 2007 QNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETF 2066
S +RL+ +G K G T+Y RG DD++LT + +RKSVSAE+NYGIRF+N + +
Sbjct: 708 LAYSKQRLRGVLGPKTGDTIYNFLRGIDDRKLTPDKERKSVSAEMNYGIRFKNQDQALHY 767
Query: 2067 LKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYER 2126
L+ LA EV KRL+ + +KG+ +TLK+M R EAP EA KFLGHG C+ +S + ER
Sbjct: 768 LQDLAVEVSKRLKAINVKGRHMTLKIMHRHPEAPVEAPKFLGHGWCETYNRSVGI---ER 824
Query: 2127 PLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLK 2186
G D A+ I +E + ++ ++
Sbjct: 825 -----------------------RGQATDD--------------ATIIGEEAVKLLKAMR 847
Query: 2187 VDPVELRGIGIQVSKLEHQSK 2207
+DP ELRG+GIQ++KL+H K
Sbjct: 848 LDPTELRGVGIQITKLDHGPK 868
Score = 78.6 bits (192), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 92/212 (43%), Gaps = 46/212 (21%)
Query: 1531 QASSTKNASNE-DFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT 1589
+A T NE F+ +Y SRLH LST + + V E R + V T
Sbjct: 430 RAMHTAERGNEAGFIDSYYQNSRLHLLSTWKTELRLLVAEARSSAEHV----------PT 479
Query: 1590 SLGITEDEDLEETFSDNPSPSE-PEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKG 1648
L PS+ E VI H+D D FFVSVG+ P+L+ +PV V H G
Sbjct: 480 VL-----------------PSQGSEKVIFHVDFDAFFVSVGLAKRPDLKGKPVVVCHSSG 522
Query: 1649 NSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKC-PNLKIVPYDFE 1707
R + +I R G+ NGM +G A + C +L +PY+F+
Sbjct: 523 GG--------RASTSEI------ASASYEARAKGVKNGMSLGRARELCGDDLATIPYEFD 568
Query: 1708 GYKEVSYCLYNLIASLTLNIEAVSLYTNESFL 1739
Y++ S Y ++ +EAVS+ +E+ L
Sbjct: 569 TYRKHSTAFYRILLGYADELEAVSI--DEALL 598
Score = 44.3 bits (103), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 1321 YMEAKKRKLEEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMM 1380
YM+ K +K++ Q A + + +F+G+ ++NG TK PS E+L+ +++
Sbjct: 98 YMKNKDKKVQTQNRELAAASNLPQVFKGLTFYINGNTK-----------PSMEDLRKMIV 146
Query: 1381 LHGGIYHHY--ESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYL 1438
GG + +++A L K K+L+ ++++ ++++S+ K++D +K+
Sbjct: 147 QRGGTVVPFLRRKRELDYVVAPVLTIAKFKELE-NYRVVREGFVLESVEREKVVDWRKWR 205
Query: 1439 LYTGTD 1444
L G +
Sbjct: 206 LRAGNE 211
>gi|301107828|ref|XP_002902996.1| DNA repair protein REV1 [Phytophthora infestans T30-4]
gi|262098114|gb|EEY56166.1| DNA repair protein REV1 [Phytophthora infestans T30-4]
Length = 943
Score = 192 bits (487), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 139/432 (32%), Positives = 203/432 (46%), Gaps = 105/432 (24%)
Query: 1319 GGYMEAKKRKLEEQFEL--------EANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVP 1370
G YM K +KL Q E A S S+ GIFQG+ ++V+GYTK P
Sbjct: 24 GVYMSHKVQKLRNQNESFTAAASPDRAPSGSKSGIFQGIHVYVDGYTK-----------P 72
Query: 1371 SAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKPGDK---IIKPEWIVDSIS 1427
S EE++ LM+LHGG + HY++ R TH++A++LP +K+ +L+ K ++ P+WIV SI
Sbjct: 73 SKEEIRQLMLLHGGGFEHYDTGRVTHLVATHLPASKLLQLQKARKPLPVVHPDWIVQSIE 132
Query: 1428 AGKLLDHKKYLLYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTE 1487
KLL P+ L + + T+ S S T + SD+V + +
Sbjct: 133 QNKLL--------------PIQSFLYAGFTDPTQNSIFSLSGSATQAEDKASSDAVFDVQ 178
Query: 1488 ESKSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEF 1547
E A P SK T KL T +STK+ DF+ F
Sbjct: 179 EDP------------PAFPPPSK-NCSTTSLKLRT----------NSTKDGP--DFVRHF 213
Query: 1548 YNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNP 1607
+ KSRLHH+ T + F+Q E + + ++G R TS SD
Sbjct: 214 FAKSRLHHIGTWRATFQQKAAEFQAQ----YKGGPVTRASATS-------------SDR- 255
Query: 1608 SPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYR 1667
VI+H+DMDCFFV+V +R PELQD PVAVAH S
Sbjct: 256 -------VILHVDMDCFFVAVAVRDKPELQDVPVAVAHSSNAGSS--------------- 293
Query: 1668 QRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNI 1727
++ + R G+G GMF+ A + CP L ++PY F+ + VS+ +Y++ S T +
Sbjct: 294 --EISSCNYSARAKGVGAGMFMQTAKELCPELIVLPYQFDDIQRVSFQIYDIFFSHTPYV 351
Query: 1728 EAVSLYTNESFL 1739
+AVS +E+FL
Sbjct: 352 QAVS--CDEAFL 361
Score = 162 bits (409), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/275 (36%), Positives = 150/275 (54%), Gaps = 10/275 (3%)
Query: 1894 SESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQAR 1953
S + V AVSCDE +++ E ++ A+ +R+ I ++TGC S G N L A+
Sbjct: 346 SHTPYVQAVSCDEAFLEF-----EKGTKGMEKANAIRQEIFEQTGCPASVGVSFNILLAK 400
Query: 1954 LATKKAKPNGQFHLT-PQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLK 2012
L++KKAKP+G + ++ P +FML + + DLPG GH KL +LG + L +++
Sbjct: 401 LSSKKAKPDGVYAISDPSQAKEFMLQLKVRDLPGAGHMTAAKLEALGVEDARQLVSMTRT 460
Query: 2013 RLQNEVGNKNGLTLYKHCRGEDDKELTFEHQ--RKSVSAEVNYGIRFQNNQEMETFLKQL 2070
L +G G L+ + RG D + L+ E RKSVSA VN+GIRF ++ FL L
Sbjct: 461 ELVQSLGKAAGERLFNYARGVDMRPLSMESNMMRKSVSAVVNFGIRFDKWEDATVFLMAL 520
Query: 2071 AGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL--PIYERPL 2128
E+ RL +K++ KC+TL + R+ AP E SKF+GHGVCD +KS L P + +
Sbjct: 521 GEELSHRLRNLKVRTKCLTLLIKKRAEGAPIEPSKFMGHGVCDNFSKSQILAQPTDDEVV 580
Query: 2129 IITYFLLLVRSAEAPREASKFLGHGVCDYITKSSS 2163
I + L+R P E + +G I+ + S
Sbjct: 581 IGKACIELLRQLNFPSEDLRGVGVQATKLISDAPS 615
>gi|392567790|gb|EIW60965.1| hypothetical protein TRAVEDRAFT_64247 [Trametes versicolor FP-101664
SS1]
Length = 1119
Score = 191 bits (486), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 123/325 (37%), Positives = 169/325 (52%), Gaps = 58/325 (17%)
Query: 1899 VSAVSCDEMYVDCS----QLLQELSLTP----------LQFASYLRETIAKETGCTCSTG 1944
+ AVS DE +D + ++ +L+ P FA +R + K TGC S G
Sbjct: 461 LQAVSVDEALIDVTSSVTRIRAKLTEQPDGADDLVDPAKDFAEAIRAQVRKITGCEVSIG 520
Query: 1945 FGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFK-LNSLGAQTC 2003
N + ARLA+++AKP G FHL P+ DF+ + + DL G GHS K L LGA
Sbjct: 521 IAPNIMLARLASRRAKPAGSFHLRPEDAPDFLAPLDIDDLHGFGHSARQKALEKLGATNL 580
Query: 2004 GDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEM 2063
G+L S L + +G G TLYK RG D+++L + RKSVS ++NYGIRF+NN++
Sbjct: 581 GELAKKSKAVLCDALGKGTGETLYKAIRGIDERQLESDKPRKSVSCDINYGIRFENNEQA 640
Query: 2064 ETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPI 2123
E F+ Q+A EV +RL ++M+G+ +TLK++VR AP EA KFLGHG+C+ K +
Sbjct: 641 EAFVYQMAEEVSRRLNSIEMRGRSLTLKILVRDPSAPVEAPKFLGHGICEGHNKQA---- 696
Query: 2124 YERPLIITYFLLLVRSAEAPREAS--KFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
PLI A R S K +G A ++LK F
Sbjct: 697 ---PLI----------APGGRATSNDKVIGE-----------------HAWRLLKSFNF- 725
Query: 2182 VNKLKVDPVELRGIGIQVSKLEHQS 2206
DP ELRGIGIQ+ KLE S
Sbjct: 726 ------DPRELRGIGIQIQKLEKAS 744
Score = 130 bits (328), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 123/498 (24%), Positives = 207/498 (41%), Gaps = 119/498 (23%)
Query: 1322 MEAKKRKLEEQ-FELEANSDS--RGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKAL 1378
M K+ KL+ Q E++ + D R IF+ + I++NG+T+ PS ++L+ +
Sbjct: 1 MTRKRAKLQLQNAEMDVDEDEAVRSKIFRDLQIYINGWTE-----------PSVQDLRQM 49
Query: 1379 MMLHGGIYHHY--ESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKK 1436
++ +GGI+H Y + S THII L K+++ + K+++PEW+VDSI AG LL +
Sbjct: 50 IVQYGGIFHAYLDKKSLVTHIITCALTPAKVREFQ-HMKVVRPEWLVDSIGAGTLLPWQD 108
Query: 1437 YLLYTG--TDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTE------- 1487
Y+ G + K+ QKS + + + T S +T+ + ++
Sbjct: 109 YIFRPGERVEGAQGRKVAQKSLLDGFISQATGHT---TQSKPNTIRATTPESQPRRVAVD 165
Query: 1488 -ESKSEAVNSEESKSEAANP-IESKQTVKTKESKLET----------------------- 1522
++ EA +S + A P KQT+ + T
Sbjct: 166 FPAQPEASSSRTTAKVATPPHTPKKQTLLSPRKPAPTTPSRALLITDPATPSEADRIPGY 225
Query: 1523 -VNISAPK-------PQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKH 1574
V+ S P P + + DF+ +Y SRLHHLS + K V E +++
Sbjct: 226 AVHRSNPHAERAMQDPAWRAAHTSVAPDFIEGYYKNSRLHHLSAWKAELKNLVAEAQDRA 285
Query: 1575 DGVFRGIEAIRKWKTSLGITE-------DEDLEETFSDN--------------------- 1606
+ G EA W TE +E +N
Sbjct: 286 EN--NGPEA---WAGLASTTEMDAPSTSQAAVERVVQENIGGRGLGSADLKGDVSMRGAR 340
Query: 1607 ------------PSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVR 1654
++ E VIMH D D FFV+ G+ P L+ +PV V H +G++
Sbjct: 341 LVKRVPGKGKGKEKAADEERVIMHCDFDSFFVAAGLIDRPHLRGKPVVVCHSQGSAG--- 397
Query: 1655 EGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSY 1714
G +E + R++G+ GM + A K CP + +PY+FE YK+ S
Sbjct: 398 -GASSTSE--------IASASYEARKFGIKGGMSLQQARKLCPAIITIPYEFELYKKFSL 448
Query: 1715 CLYNLIASLTLNIEAVSL 1732
Y ++ + +++AVS+
Sbjct: 449 QFYTILMAHADDLQAVSV 466
>gi|391863757|gb|EIT73056.1| translesion DNA polymerase - REV1 deoxycytidyl transferase
[Aspergillus oryzae 3.042]
Length = 1087
Score = 191 bits (485), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 136/397 (34%), Positives = 195/397 (49%), Gaps = 81/397 (20%)
Query: 1872 VWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCS-QLLQ----------ELSL 1920
+ EA Q+ S + S IV +VS DE +D + Q L+ E SL
Sbjct: 439 AYEEASQKFYSAILSL--------DGIVQSVSIDEALIDVTTQCLEAGGSDGRGISEGSL 490
Query: 1921 TPLQ-----FASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDF 1975
Q A LRE + +TGC S G G N LQA++A +KAKP GQF L P + DF
Sbjct: 491 YREQAKADEIAQSLREAVKHKTGCAVSIGIGGNILQAKVALRKAKPAGQFQLKPDAVLDF 550
Query: 1976 MLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDD 2035
+ + + DLPGVGHSL KL LG + D++ ++ + L + +G K G ++ + RG D
Sbjct: 551 IGGLTVQDLPGVGHSLGGKLEELGVKLVKDVRELTREILTSTLGPKLGAKIWDYARGIDR 610
Query: 2036 KELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVR 2095
E+ E RKSVSAEVN+GIRF N + + F++ L E+ +RL E +KGK +TLK+M R
Sbjct: 611 TEVGSEVMRKSVSAEVNWGIRFVNQAQADDFVQSLCEELHRRLVENLVKGKQLTLKVMRR 670
Query: 2096 SAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVC 2155
+A+AP E K LGHG CD KS L + A++ LG
Sbjct: 671 AADAPLEPVKHLGHGKCDVFNKSVILGVAT-------------------NAAETLG---- 707
Query: 2156 DYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSKLEH-QSKTLATID- 2213
KE + ++ L + P +LRG+G+Q++KLE + + +D
Sbjct: 708 --------------------KEAVSMLRSLAITPGDLRGLGVQMTKLEPLKPGNMGNLDN 747
Query: 2214 -----TFFT-------NKGKPPDQLNNPRPGPSNSTI 2238
F T +K PD L +PR G ++S I
Sbjct: 748 SQQQLNFKTSPARRNIHKSHDPDDLASPRKGETDSVI 784
Score = 155 bits (391), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 143/531 (26%), Positives = 217/531 (40%), Gaps = 130/531 (24%)
Query: 1321 YMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALM 1379
YM KK KL+ E+ ++ IF+GV VNGYT+ PS ++L L+
Sbjct: 40 YMRRKKIKLQNLDAEIRSSVSDCPPIFRGVVAHVNGYTQ-----------PSLQDLHRLI 88
Query: 1380 MLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY 1437
+ HGG + Y +T THIIAS+L K ++ + +I+KP W+V+SI AG++L +
Sbjct: 89 VSHGGGFLQYLDGKTAATHIIASSLTPKKREEFR-RYRIVKPAWVVESIKAGRILPWDSF 147
Query: 1438 LLYTGTDAKPLTKLLQKSYFENTEAPCCS------------------------------- 1466
+ A+ + K T P S
Sbjct: 148 RVVDEGYAQKVLKFDNGRILSQTNCPPSSYKDQAFPSPYTSRAKELDIVDDVNMQPSVSI 207
Query: 1467 ---KSLVETSSHTSTVSD--------SVDNT-------EESKSEAVNSEESKSEAANPIE 1508
S +S ++ SD S D T E K +A + E S+ A
Sbjct: 208 AEPHSAAGSSLKATSQSDYGDFPSFSSTDETNKIPLPEEPQKDQARDHESRLSDTARNPS 267
Query: 1509 SKQTVKTKESKLETVNISAPKPQASS------------TKNAS--NEDFLGEFYNKSRLH 1554
+ K+K + S KP SS +N+S N DFL +FY +SRLH
Sbjct: 268 RSMSPKSKAIVKPASSPSPAKPDMSSEAYNAQLLSDPRMRNSSVVNPDFLQQFYKESRLH 327
Query: 1555 HLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEP 1614
HLST WK L +E P+ + P
Sbjct: 328 HLST----------------------------WKAELKAQLQAATKEKLQSQPAKKKSAP 359
Query: 1615 ----VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRT 1670
IMH+D DCFF +V +P + +PVAVAHG G+ S++
Sbjct: 360 GARRYIMHVDFDCFFAAVSTLRNPGYEGKPVAVAHGTGSGSEIAS--------------- 404
Query: 1671 MNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAV 1730
R +G+ NGM++ AL+ CP+LK++PYDF Y+E S Y+ I SL +++V
Sbjct: 405 ---CNYAARAHGVKNGMWMKGALQACPDLKVLPYDFPAYEEASQKFYSAILSLDGIVQSV 461
Query: 1731 SLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSH 1781
S+ +E+ ++ + + D + L REQ + +AQ + A H
Sbjct: 462 SI--DEALIDVTTQCLEAGGSDGRGISEGSLYREQAKADEIAQSLREAVKH 510
>gi|406699179|gb|EKD02390.1| hypothetical protein A1Q2_03282 [Trichosporon asahii var. asahii CBS
8904]
Length = 1238
Score = 191 bits (484), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 114/321 (35%), Positives = 168/321 (52%), Gaps = 52/321 (16%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTP-----------LQFASYLRETIAKETGCTCSTGFGS 1947
+ AVS DE ++ + + + P + A +R I TGC S G
Sbjct: 588 LEAVSIDEALLEVTGAVTARQMAPDEAEAISPDPAVCVAEQIRSDIRDATGCEVSIGISH 647
Query: 1948 NKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL-NSLGAQTCGDL 2006
N L ARLAT+KAKP G + LT + + + + LP VGHS+ KL ++ G CGDL
Sbjct: 648 NILLARLATRKAKPGGVYRLTTDNCDELLSELDVKSLPSVGHSMQAKLQDAFGTTKCGDL 707
Query: 2007 QNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETF 2066
S +RL+ +G K G T++ RG DD++LT + +RKSVSAE+NYGIRF+N + +
Sbjct: 708 LAYSKQRLRGVLGPKTGDTIFNFLRGIDDRKLTPDKERKSVSAEMNYGIRFKNQDQALNY 767
Query: 2067 LKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYER 2126
L+ LA EV KRL+ + +KG+ +TLK+M R EAP EA KFLGHG C+ +S
Sbjct: 768 LQDLAVEVSKRLKAINVKGRHLTLKIMHRHPEAPVEAPKFLGHGWCETYNRS-------- 819
Query: 2127 PLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLK 2186
+ + R +A +A I +E + ++ ++
Sbjct: 820 -------VGIERRGQA-------------------------TDEAIIIGEEAVKLLKAMR 847
Query: 2187 VDPVELRGIGIQVSKLEHQSK 2207
+DP ELRG+GIQ++KL+H K
Sbjct: 848 LDPTELRGVGIQITKLDHGPK 868
Score = 79.0 bits (193), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 92/212 (43%), Gaps = 46/212 (21%)
Query: 1531 QASSTKNASNE-DFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT 1589
+A T NE F+ +Y SRLH LST + + V E R + V T
Sbjct: 430 RAMHTAERGNEAGFIDSYYQNSRLHLLSTWKTELRLLVAEARSSAEHV----------PT 479
Query: 1590 SLGITEDEDLEETFSDNPSPSE-PEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKG 1648
L PS+ E VI H+D D FFVSVG+ P+L+ +PV V H G
Sbjct: 480 VL-----------------PSQGSEKVIFHVDFDAFFVSVGLAKRPDLKGKPVVVCHSSG 522
Query: 1649 NSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKC-PNLKIVPYDFE 1707
R + +I R G+ NGM +G A + C +L +PY+F+
Sbjct: 523 GG--------RASTSEI------ASASYEARAKGVKNGMSLGRARELCGDDLATIPYEFD 568
Query: 1708 GYKEVSYCLYNLIASLTLNIEAVSLYTNESFL 1739
Y++ S Y ++ +EAVS+ +E+ L
Sbjct: 569 TYRKHSTAFYRILLGYADELEAVSI--DEALL 598
Score = 44.7 bits (104), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 1321 YMEAKKRKLEEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMM 1380
YM+ K +K++ Q A + + +F+G+ ++NG TK PS E+L+ +++
Sbjct: 98 YMKNKDKKVQTQNRELAAASNLPQVFKGLTFYINGNTK-----------PSMEDLRKMIV 146
Query: 1381 LHGGIYHHY--ESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYL 1438
GG + +++A L K K+L+ ++++ ++++S+ K++D +K+
Sbjct: 147 QRGGTVVPFLRRKRELDYVVAPVLTIAKFKELE-NYRVVREGFVLESVEREKVVDWRKWR 205
Query: 1439 LYTGTD 1444
L G +
Sbjct: 206 LRAGNE 211
>gi|449543333|gb|EMD34309.1| hypothetical protein CERSUDRAFT_107516 [Ceriporiopsis subvermispora
B]
Length = 1218
Score = 191 bits (484), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 135/390 (34%), Positives = 196/390 (50%), Gaps = 63/390 (16%)
Query: 1899 VSAVSCDEMYVDCSQLL----------QELSLTPLQ----FASYLRETIAKETGCTCSTG 1944
+ AVS DE +D + + Q+ S +P FA +R + K TGC S G
Sbjct: 551 LQAVSVDEALIDVTSSVMRIKSEIAQSQDSSSSPTDPAKDFAEAIRAQVKKVTGCEVSIG 610
Query: 1945 FGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNS-LGAQTC 2003
N + ARLA++KAKP G FHL P IS F+ + + DL G G+S K L A
Sbjct: 611 IARNIMLARLASRKAKPAGSFHLLPSDISGFLAPLDIDDLHGFGYSARQKAQEKLAATNL 670
Query: 2004 GDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEM 2063
G+L S +L + +G G TLYK RG D+++L + RKSVS +VNYGIRF++N+++
Sbjct: 671 GELAQKSKAQLCDALGKGTGETLYKAIRGIDERKLESDKPRKSVSCDVNYGIRFESNEQV 730
Query: 2064 ETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPI 2123
ETFL QLA E +RL+ + M+G+ +TLK++ R +AP EA KF+GHG+C+ TK +L
Sbjct: 731 ETFLYQLAEETARRLDAIDMRGRSLTLKVLKRHPDAPVEAPKFMGHGLCETFTKQGTL-- 788
Query: 2124 YERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQAS-QILKEVLFIV 2182
+ G +++S P I + S ++LK F
Sbjct: 789 --------------------------IAPG-----GRATSDPKLIGELSWRLLKSFNF-- 815
Query: 2183 NKLKVDPVELRGIGIQVSKLEHQSKTLATIDTFFTNKGKPPDQLNNPRPGPSNSTITPGP 2242
DP ELRGIG+Q+ KLE KT + T P + +P+ G + T
Sbjct: 816 -----DPGELRGIGVQIQKLE---KTSSASTTETGQAILPFKAVESPKRG-AGLAATDLD 866
Query: 2243 SNSTLPPGPSNSTL---PPGPSNSTLLPGP 2269
++ TL P P+ + PP N + GP
Sbjct: 867 NSHTLGPSPNRPRIVVEPPSQENEETVEGP 896
Score = 138 bits (347), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 125/480 (26%), Positives = 206/480 (42%), Gaps = 97/480 (20%)
Query: 1321 YMEAKKRKLEEQ-FELEANSDS--RGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
YM K+ KL+ Q EL +D + IF G+ I++NG+T+ PS ++L+
Sbjct: 106 YMARKRAKLQIQNSELNHGNDQTQKSTIFSGLQIYINGWTE-----------PSVQDLRQ 154
Query: 1378 LMMLHGGIYHHYESSR--TTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHK 1435
L++ HGG+YH Y + THII +L KI++ K K+++PEW+V+S +AG LL
Sbjct: 155 LIIRHGGVYHAYLDKKGLVTHIITCSLTPAKIREFK-HMKVVQPEWLVESAAAGLLLPWH 213
Query: 1436 KYLLYTG--TDAKPLTKLLQKSYFEN------------TEAPCCSKSLVETSSHTSTVSD 1481
Y+ +A ++ QKS F+ +P + V + T+ +
Sbjct: 214 NYVFRPCERLEASQGKQVAQKSLFDGFVSQSESQHQDKHPSPSVASFNVGSGQPTAPTAG 273
Query: 1482 SVDNTEESKSEAVNSEESKS----------EAANPIESKQTVKTKESKLETVNISAPKPQ 1531
E ++ A + + ++P +Q + T N A +
Sbjct: 274 PSRLVTEPRASATPPQSPRKPTPVTPSKPLHTSDPSTPEQAARVPGYAAHTSNPIAQRAM 333
Query: 1532 ASSTKNASNE----DFLGEFYNKSRLHHLSTMGSMFKQYVNELREK-HDGVFRGIEAIRK 1586
A A++ DF+ +Y SRLHHLST + K V E +E+ DG + + +
Sbjct: 334 ADPAWRAAHTSVAPDFIEGYYRNSRLHHLSTWKAELKNMVLEAQERAEDGGAAVLARLAE 393
Query: 1587 WKTSLG---ITEDED-------------------------------LEETFSDNPSPSEP 1612
S+ I E+ D E DN
Sbjct: 394 SDESVVAKIIQENLDGTGFKSAGEGDVSMRGARLEMQHSPKFKGKGKERVVEDN-----Q 448
Query: 1613 EPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMN 1672
E VIMH D D FFVS G+ P L+ +PV V H +G + G +E +
Sbjct: 449 ERVIMHCDFDSFFVSAGLIDRPHLRGKPVVVCHSQG----AQGGQSSTSE--------IA 496
Query: 1673 RMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSL 1732
R++G+ +GM + A K CP + +PY+F+ YK++S Y ++ + +++AVS+
Sbjct: 497 SASYEARKFGIKSGMSLQQARKLCPTVLTMPYEFQRYKQLSLQFYTILMAHADDLQAVSV 556
>gi|225681089|gb|EEH19373.1| DNA polymerase IV [Paracoccidioides brasiliensis Pb03]
Length = 1161
Score = 191 bits (484), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 116/323 (35%), Positives = 170/323 (52%), Gaps = 61/323 (18%)
Query: 1898 IVSAVSCDEMYVDCSQL-----------LQELSLTPLQ-----FASYLRETIAKETGCTC 1941
IV +VS DE VD + + + E S+ Q A LR+++ ++TGC
Sbjct: 460 IVQSVSIDEALVDITNICLDAGGSDGIGISEGSIYREQAKADEIAQKLRDSVKEQTGCNI 519
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N LQAR+A +KAKP GQF L P + DF+ + + DLPGV HSL KL LG
Sbjct: 520 SVGIGGNVLQARVALRKAKPAGQFQLKPDAVQDFIGELTVKDLPGVAHSLGGKLEELGVV 579
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ +S ++L + +G K G L+ + RG D+ E+ + RKSVSAE+++GIRF +
Sbjct: 580 FVKDIRELSKEKLTSSLGPKTGAKLWNYARGIDNTEVGIQVPRKSVSAEISWGIRFVSQT 639
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ E F++ L E+ +RL E +KGK +T+++M RSA+AP E K LGHG CD KS +L
Sbjct: 640 QAEEFVQSLCDELHRRLVENLVKGKQLTMRIMKRSADAPLEPVKHLGHGKCDTFNKSVAL 699
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL-KEVLF 2180
GV + AS I+ +E +
Sbjct: 700 -------------------------------GVA-------------TNASDIIGREAIS 715
Query: 2181 IVNKLKVDPVELRGIGIQVSKLE 2203
I+ K P +LRG+G+Q++KLE
Sbjct: 716 ILRGFKFSPGDLRGLGVQMTKLE 738
Score = 144 bits (364), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 143/521 (27%), Positives = 226/521 (43%), Gaps = 115/521 (22%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G Y KK KL+ E+ A+S + IF+GV VNGYT+ PS +L
Sbjct: 38 GDYFRRKKLKLQNLDAEVRASSPNNPPIFRGVVAHVNGYTQ-----------PSLNDLHR 86
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHK 1435
L++ HGG + Y +T THI+AS L K ++ + +I+KP W+V+S+ AG+LL
Sbjct: 87 LIVSHGGGFLQYLDGKTSATHILASALTPKKREEFR-KYRIVKPGWVVESVKAGRLLPWD 145
Query: 1436 KY----------LLYTGTDAKPLTK--LLQKSYFENTEAPCCSKSLVETSSHTSTV-SDS 1482
K+ +L G D + ++ + +SY ++T ETS +TS + S
Sbjct: 146 KFRVVDEGQSQKVLTFGGDGRVQSQANIQFRSYRDHT----------ETSWYTSQIKSGF 195
Query: 1483 VDNTEESKSE-AVNSEESKSEAANPIESKQTVKTKESKL--------------ETVNISA 1527
D TE+ ++ A++ +K AA S+ ES L E + S
Sbjct: 196 ADITEKMETTGAISPSGTKDTAAISPSSRDPNLAVESDLGNDMFPTQNDGIPDEAIAGSD 255
Query: 1528 PK------------PQASSTKNA-----------SNEDFLGEFYNKSRL-----HHLSTM 1559
P+ P + TK + E YN L + S +
Sbjct: 256 PQGELGITTSQRMSPISEETKRQGPVYDLQNHVDTKSSMTPEVYNAKLLSDPHYQNSSVV 315
Query: 1560 GSMF-KQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEP---- 1614
S F +Q+ E R H + WK L ++ S + P
Sbjct: 316 NSKFIQQFYCESRLHH---------LSTWKAELKAQIQSAAQDKGSTRKPARQRVPGVRR 366
Query: 1615 VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRM 1674
IMH+D D FF +V IR HPEL D+PVA+AHG G S++
Sbjct: 367 YIMHVDFDSFFAAVSIRKHPELADQPVAIAHGTGPGSEIAS------------------C 408
Query: 1675 GLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYT 1734
R +G+ NGM++ AL+ CPNLK++PYDF Y+E S Y +I ++ +++VS+
Sbjct: 409 NYPARSFGIKNGMWMKGALQMCPNLKVLPYDFAAYEEASRNFYEVILAIDGIVQSVSI-- 466
Query: 1735 NESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
+E+ ++ + D + + + REQ + +AQ +
Sbjct: 467 DEALVDITNICLDAGGSDGIGISEGSIYREQAKADEIAQKL 507
>gi|159124308|gb|EDP49426.1| DNA damage repair protein Mus42, putative [Aspergillus fumigatus
A1163]
Length = 1154
Score = 190 bits (483), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 118/323 (36%), Positives = 170/323 (52%), Gaps = 61/323 (18%)
Query: 1898 IVSAVSCDEMYVDCS-QLLQ----------ELSLTPLQ-----FASYLRETIAKETGCTC 1941
+V +VS DE VD + Q L+ E S+ Q A LRE++ TGC
Sbjct: 467 VVQSVSIDEALVDITLQCLEAGGSDGRGISEGSIYREQAKADEIAQNLRESVKAATGCDV 526
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N LQA++A +KAKP GQF L P + D + ++ + DLPGVG+SL KL LG +
Sbjct: 527 SVGIGGNILQAKVALRKAKPAGQFQLKPDSVLDLIGDLTVQDLPGVGYSLGAKLEELGVK 586
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ +S ++L N +G K GL ++++ RG D E+ E RKSVSAEVN+GIRF N
Sbjct: 587 LVKDVRGVSREKLINHLGPKTGLKIWEYARGIDRTEVGNEVLRKSVSAEVNWGIRFVNQT 646
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ E F+K L E+ +RL + +KGK +TLK+M R+A+AP E K LGHG CD +S L
Sbjct: 647 QAEDFVKSLCEELHRRLSDNLVKGKQLTLKVMRRAADAPLEPVKHLGHGKCDVFNRSVVL 706
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL-KEVLF 2180
I + A ++L KE +
Sbjct: 707 GI--------------------------------------------ATNAPEVLAKEAIS 722
Query: 2181 IVNKLKVDPVELRGIGIQVSKLE 2203
++ + P +LRG+G+Q++KLE
Sbjct: 723 MLRSFGITPGDLRGLGVQMTKLE 745
Score = 139 bits (351), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 132/519 (25%), Positives = 223/519 (42%), Gaps = 104/519 (20%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G YM KK KL+ E+ ++S R IF+GV VNGYT+ PS ++L
Sbjct: 38 GDYMRRKKIKLQNLDAEIRSSSPDRPPIFRGVVAHVNGYTQ-----------PSLQDLHR 86
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL--- 1432
L++ HGG + Y +T THIIAS+L K ++ K +I+KP W+V+SI AG+LL
Sbjct: 87 LIVSHGGGFLQYLDGKTAATHIIASSLTLKKREEFK-RYRIVKPAWVVESIKAGRLLPWD 145
Query: 1433 ---------------------------------DHKKYLLYTGTDAKPLTKLLQK--SYF 1457
D + YT + K L L ++ S
Sbjct: 146 AFRVVDEGHAQKVLNFDNGRLLSQANVQQSGYRDQSDFSWYT-SRLKGLGMLAEEVPSVT 204
Query: 1458 ENTEAP--CCSKSLVETSSHTSTVSDSVDNTEESKSEAVNS-----EESKSEAANPIESK 1510
E E P S + ++ T+T SD D + S+ + + +S++ ++++
Sbjct: 205 EPPEVPEQIAQASAADEATKTATESDYGDFPSFASSDPAGNIPGVPKSEQSDSPKHLDAE 264
Query: 1511 QT----VKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKS-----RLHHLSTMGS 1561
T V + V ++ P + + + E YN R+ + S +
Sbjct: 265 DTAAADVGRRMPTQSPVIVTDQHPPLAGESVPTKTEMTPEEYNAQLLADPRMRNSSVVNP 324
Query: 1562 MF-KQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEP----VI 1616
F +Q+ E R H + WK L +E +P P +
Sbjct: 325 EFLQQFYRESRLHH---------LSTWKAELKAQLQAAAKEKSHSQAGRKKPAPGARRYV 375
Query: 1617 MHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGL 1676
+H+D D FF +V + HPEL+ +PVA+AHG G+ S++
Sbjct: 376 LHVDFDSFFAAVSMLKHPELKGQPVAIAHGTGSGSEIAS------------------CNY 417
Query: 1677 NTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNE 1736
R G+ NGM++ AL+ CP LK++PYDF Y+E S Y+ + ++ +++VS+ +E
Sbjct: 418 PARARGIRNGMWMKGALQACPELKVLPYDFPAYEEASKKFYSAVLAVDGVVQSVSI--DE 475
Query: 1737 SFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
+ ++ + + D + + REQ + +AQ++
Sbjct: 476 ALVDITLQCLEAGGSDGRGISEGSIYREQAKADEIAQNL 514
>gi|358056458|dbj|GAA97632.1| hypothetical protein E5Q_04310 [Mixia osmundae IAM 14324]
Length = 1044
Score = 190 bits (483), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 126/362 (34%), Positives = 176/362 (48%), Gaps = 58/362 (16%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLT--------PLQFASYLRETIAKETGCTCSTGFGSNKL 1950
+ AVS DE +D + + +S T LQ +RE + +ETGC S G N L
Sbjct: 465 LQAVSVDEALIDVTTTVAAISDTITDPGSDAALQLCEQIRENVRQETGCEVSIGCSHNIL 524
Query: 1951 QARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNS-LGAQTCGDLQNI 2009
ARLAT++AKP +HL P + F+ +I + DLPG+G + + L T G+L+ I
Sbjct: 525 LARLATREAKPASAYHLLPADVETFLQDIDIGDLPGIGWAKKREFTERLKVTTIGELRAI 584
Query: 2010 SLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQ 2069
++RL+N G G T Y RG DD+ L RKSVSAEVNYGIRF+N + ETF+K
Sbjct: 585 DMERLRNTFGPNLGKTYYNFARGIDDRPLEMGSARKSVSAEVNYGIRFENRDQAETFVKN 644
Query: 2070 LAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLI 2129
L EV +RL E +KG+ +TLK+M R+ + P E KFLGHG+CD TK +
Sbjct: 645 LGAEVARRLAEHGLKGRQMTLKVMRRAGDQPNETWKFLGHGICDSFTKIGN--------- 695
Query: 2130 ITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDP 2189
LG+ D A I + +++ D
Sbjct: 696 --------------------LGNIATD-------------SADVISAQAWRLMDAFGFDE 722
Query: 2190 VELRGIGIQVSKLEHQSKTLATIDTF----FTNKGKPPDQLNNPRPGPSNSTITPGPSNS 2245
+LRGIGIQ+++LE + L + FT K PD P SN+ + P +
Sbjct: 723 KDLRGIGIQITQLEDMNGPLDLAEGQQRLDFT---KLPDVKALPSAEASNTAASSDPIDL 779
Query: 2246 TL 2247
TL
Sbjct: 780 TL 781
Score = 151 bits (381), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 128/448 (28%), Positives = 205/448 (45%), Gaps = 78/448 (17%)
Query: 1321 YMEAKKRKL--EEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKAL 1378
YM K+ KL +++ +EA D+ IF G+AI++NG+ + P L
Sbjct: 65 YMRNKRMKLKIQQKAVVEALGDAYPQIFTGLAIYINGFCE-----------PPLSVLSRD 113
Query: 1379 MMLHGGIYHHY--ESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKK 1436
+ LHGG Y Y S THI+ASNL +K + K K+ KP WIV+SI AGK LD +
Sbjct: 114 LALHGGTYVPYLDRKSLVTHILASNLTPSKRVEFK-DYKVAKPSWIVESIKAGKRLDWRD 172
Query: 1437 YLLYTG---TDAKPLT---------KLLQKSYFENTEA----------PCCSKSLVETSS 1474
Y L TD +P K+ Q++ +A PC S+ + ++
Sbjct: 173 YRLGDAPAETDMRPSGSQIAATQSYKIPQQNLLAMMKAQPAIKTPPIEPCVIPSVADKAT 232
Query: 1475 HTSTVSDSVDNTE-ESKSEAVNSEESKSEA--ANPIESKQTVKTKESKLETVNISAPKPQ 1531
S + T + + + S SK++A +P E ++ + +++ S Q
Sbjct: 233 SRQAYSGTRSGTTVKDRQQTRISSPSKADALSTDPQERQRAAEWQQANAPKSGYSGDLYQ 292
Query: 1532 AS---STKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWK 1588
+ +A DF+ +Y KSRLHHLST + + + L+EK D RK K
Sbjct: 293 NEKWMAEHSARAADFIPGYYEKSRLHHLSTWKAELRLMMQSLKEKQDAEVSSGTLKRKPK 352
Query: 1589 TSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAH--- 1645
+ + L+ T +D +IMH+D D FF+S G+ P L + VAV H
Sbjct: 353 P-----KAKQLKGTEADGR-------IIMHVDFDSFFLSAGLIKRPHLFGKAVAVCHSET 400
Query: 1646 -GKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPY 1704
G+ ++S++ R +G+ NGM +G A + CP++ +PY
Sbjct: 401 VGESSTSEIAS------------------CSYEARRHGVANGMALGRAKELCPDITTIPY 442
Query: 1705 DFEGYKEVSYCLYNLIASLTLNIEAVSL 1732
+FE YKE+S Y + ++ ++AVS+
Sbjct: 443 EFELYKEISTKFYAHLLRISDQLQAVSV 470
>gi|70991795|ref|XP_750746.1| DNA damage repair protein Mus42 [Aspergillus fumigatus Af293]
gi|66848379|gb|EAL88708.1| DNA damage repair protein Mus42, putative [Aspergillus fumigatus
Af293]
Length = 1154
Score = 190 bits (483), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 118/323 (36%), Positives = 170/323 (52%), Gaps = 61/323 (18%)
Query: 1898 IVSAVSCDEMYVDCS-QLLQ----------ELSLTPLQ-----FASYLRETIAKETGCTC 1941
+V +VS DE VD + Q L+ E S+ Q A LRE++ TGC
Sbjct: 467 VVQSVSIDEALVDITLQCLEAGGSDGRGISEGSIYREQAKADEIAQNLRESVKAATGCDV 526
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N LQA++A +KAKP GQF L P + D + ++ + DLPGVG+SL KL LG +
Sbjct: 527 SVGIGGNILQAKVALRKAKPAGQFQLKPDSVLDLIGDLTVQDLPGVGYSLGAKLEELGVK 586
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ +S ++L N +G K GL ++++ RG D E+ E RKSVSAEVN+GIRF N
Sbjct: 587 LVKDVRGVSREKLINHLGPKTGLKIWEYARGIDRTEVGNEVLRKSVSAEVNWGIRFVNQT 646
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ E F+K L E+ +RL + +KGK +TLK+M R+A+AP E K LGHG CD +S L
Sbjct: 647 QAEDFVKSLCEELHRRLSDNLVKGKQLTLKVMRRAADAPLEPVKHLGHGKCDVFNRSVVL 706
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL-KEVLF 2180
I + A ++L KE +
Sbjct: 707 GI--------------------------------------------ATNAPEVLAKEAIS 722
Query: 2181 IVNKLKVDPVELRGIGIQVSKLE 2203
++ + P +LRG+G+Q++KLE
Sbjct: 723 MLRSFGITPGDLRGLGVQMTKLE 745
Score = 106 bits (264), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 108/240 (45%), Gaps = 52/240 (21%)
Query: 1540 NEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDL 1599
N +FL +FY +SRLHHLST WK L
Sbjct: 323 NPEFLQQFYRESRLHHLST----------------------------WKAELKAQLQAAA 354
Query: 1600 EETFSDNPSPSEPEP----VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVRE 1655
+E +P P ++H+D D FF +V + HPEL+ +PVA+AHG G+ S++
Sbjct: 355 KEKSHSQAGRKKPAPGARRYVLHVDFDSFFAAVSMLKHPELKGQPVAIAHGTGSGSEIAS 414
Query: 1656 GVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYC 1715
R G+ NGM++ AL+ CP LK++PYDF Y+E S
Sbjct: 415 ------------------CNYPARARGIRNGMWMKGALQACPELKVLPYDFPAYEEASKK 456
Query: 1716 LYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
Y+ + ++ +++VS+ +E+ ++ + + D + + REQ + +AQ++
Sbjct: 457 FYSAVLAVDGVVQSVSI--DEALVDITLQCLEAGGSDGRGISEGSIYREQAKADEIAQNL 514
Score = 74.7 bits (182), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 68/117 (58%), Gaps = 15/117 (12%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G YM KK KL+ E+ ++S R IF+GV VNGYT+ PS ++L
Sbjct: 38 GDYMRRKKIKLQNLDAEIRSSSPDRPPIFRGVVAHVNGYTQ-----------PSLQDLHR 86
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL 1432
L++ HGG + Y +T THIIAS+L K ++ K +I+KP W+V+SI AG+LL
Sbjct: 87 LIVSHGGGFLQYLDGKTAATHIIASSLTLKKREEFK-RYRIVKPAWVVESIKAGRLL 142
>gi|391330251|ref|XP_003739577.1| PREDICTED: DNA repair protein REV1-like [Metaseiulus occidentalis]
Length = 549
Score = 190 bits (482), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 141/424 (33%), Positives = 206/424 (48%), Gaps = 90/424 (21%)
Query: 1320 GYMEAKKRKLEEQFELEANS-DSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKAL 1378
GYM AK +KLE QF+ ++ + + IF+GVAI VNGYT+ PS++EL+ L
Sbjct: 18 GYMAAKIQKLELQFQADSRQFEQKSEIFKGVAIHVNGYTQ-----------PSSDELRRL 66
Query: 1379 MMLHGGIYHHYESSRTTH-IIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY 1437
+ +HGG + +Y T H +I NL +K KK ++P+WIVDSISAG L Y
Sbjct: 67 IGIHGGHFLNYFQRGTNHYVICCNL--SKAKKADWLRFAVRPDWIVDSISAGHRLPVADY 124
Query: 1438 LLYTGTDAKPLTKLLQKSYFE-NTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSEAVNS 1496
L +++ F+ TE P S V+ T+SD V
Sbjct: 125 YLEK-----------KRTVFDVQTEVPSTSSGAVKCP----TISDLVIG----------- 158
Query: 1497 EESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHL 1556
K P E K K +E + AS+ F+ +F+ SRL +
Sbjct: 159 ---KDADGPPAEYKMPTKNEEPR-----------------TASDAGFVEKFFRHSRLSFI 198
Query: 1557 STMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVI 1616
+TM ++Y+ L+E D F G +A+ ++ D EE + V
Sbjct: 199 ATMKVKMQEYLKTLKENPDHQFTG-KAL--------LSRDSQSEEVMDSS--------VY 241
Query: 1617 MHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQ-------- 1668
+HIDMDCFF SV +R PEL+D+PVA+ N R+ D + YR
Sbjct: 242 LHIDMDCFFASVAVRGRPELRDKPVAIC---SNQKAKRKNQDPNLDLTDYRNWNWQDAST 298
Query: 1669 RTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIE 1728
++ + R++G+ MF+G A CP+L ++PYDFEG++EVS CLY+ +ASLTLNIE
Sbjct: 299 AEISCVNYAARQFGIHASMFLGMAQALCPDLIVLPYDFEGFEEVSKCLYDTVASLTLNIE 358
Query: 1729 AVSL 1732
A S+
Sbjct: 359 AQSV 362
Score = 142 bits (358), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 122/204 (59%), Gaps = 6/204 (2%)
Query: 1875 EAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIA 1934
E ++E+ C+ + +S + + A S DE+Y D + ++QE+ TP YLRETI
Sbjct: 337 EGFEEVSKCLYDTV----ASLTLNIEAQSVDELYADVTDVIQEIQCTPEAIGRYLRETIL 392
Query: 1935 KETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFK 1994
+ +GCTC+ G G N L ARLATKKAKPNG ++ + DFM + +S++PGVG S K
Sbjct: 393 EASGCTCTVGMGPNLLIARLATKKAKPNGLCYIRQDEVPDFMADKKVSEIPGVGGSTEEK 452
Query: 1995 LNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKEL--TFEHQRKSVSAEVN 2052
L LG C +LQ +++ L+ G + + + RG +++ + + QRK++S E+N
Sbjct: 453 LRELGVTKCVELQQVNMSELKELFGANQAVKIVELSRGICTRKIKDSVDVQRKNISVEIN 512
Query: 2053 YGIRFQNNQEMETFLKQLAGEVEK 2076
YG+RF++ E++ L++L+ E K
Sbjct: 513 YGMRFKDVSEVKNCLEELSTESHK 536
>gi|208436012|gb|ACI28453.1| topoisomerase II [Fusarium udum]
Length = 243
Score = 190 bits (482), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 114/277 (41%), Positives = 141/277 (50%), Gaps = 82/277 (29%)
Query: 325 EVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFG 384
EV A SD FQQVSFVNSIATT GG HV+ + D + + +++ + KK K
Sbjct: 1 EVGFAVSDGTFQQVSFVNSIATTSGGTHVNYIADQVTEALLKALNKKRK----------- 49
Query: 385 NKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT 444
G ALK +KNHI+IF+NC I NP F SQTKE MT
Sbjct: 50 -------------------------GHALKQNHLKNHIFIFVNCYINNPAFTSQTKEQMT 84
Query: 445 LQKGSFGSTCV-------------------------------------------PKLEDA 461
+ FGS C KL +A
Sbjct: 85 TKPSQFGSKCKLGEDFLKKIAKSDALQNILDFAEKKADKMLAKGDGNKRSRVNNAKLVEA 144
Query: 462 NDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILEN 521
N AGT+ +CTLILTEGDSAK LAVSG ++ D+ GVFPLRGKLLNVR+A+ QI++N
Sbjct: 145 NFAGTRRGHECTLILTEGDSAKGLAVSGRAILDPDRIGVFPLRGKLLNVRDASVDQIMKN 204
Query: 522 AEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTD 558
EI N+ + LGL++ + YT D K LRYG LMIM D
Sbjct: 205 TEIQNIKQFLGLKHKQTYT---DTKNLRYGHLMIMAD 238
>gi|340923803|gb|EGS18706.1| hypothetical protein CTHT_0053130 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1268
Score = 190 bits (482), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/322 (34%), Positives = 170/322 (52%), Gaps = 59/322 (18%)
Query: 1898 IVSAVSCDEMYVDCSQLLQELSLTPL----------------QFASYLRETIAKETGCTC 1941
+V AVS DE VD + ++ E + + Q A LRE I ++TGC
Sbjct: 512 VVQAVSIDEALVDVTDIVMERTGSEGIGVSEGSVWREQKEVDQIALGLREEIKRKTGCNV 571
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N L A++A +KAKP GQ+HL P+ + +F+ + + DLPGV +S+ KL +G +
Sbjct: 572 SVGIGGNILLAKIALRKAKPAGQYHLRPEEVLEFIGELKVEDLPGVAYSIGGKLEEMGIK 631
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
DL+ +S ++L + +G K G LY++ RG D E+ + RKSVSA+VN+GIRF + +
Sbjct: 632 YVKDLRGVSKEKLASVLGPKTGEKLYEYARGIDRTEVGDQPMRKSVSADVNWGIRFVSQE 691
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
E E F++ L E+E+RL +KG+ +T+++M RS +AP E +K LGHG CD TKS +
Sbjct: 692 EAEEFVRNLCKELERRLLNEGVKGRHLTMRIMRRSPDAPLEPAKHLGHGKCDVFTKSVAF 751
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
+ P + +G KE + I
Sbjct: 752 GV-------------------PTNDPELIG------------------------KEAVTI 768
Query: 2182 VNKLKVDPVELRGIGIQVSKLE 2203
+ + P +LRGIG+Q++KLE
Sbjct: 769 LRSFRFSPGDLRGIGLQMTKLE 790
Score = 94.4 bits (233), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 90/197 (45%), Gaps = 43/197 (21%)
Query: 1537 NASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITED 1596
+A+N +FL ++Y++SRLHHLST + K + L S +
Sbjct: 364 SAANPNFLKQYYSESRLHHLSTWKAQLKSRLQAL-----------------AASKALP-- 404
Query: 1597 EDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQ-DEPVAVAHGKGNSSKVRE 1655
T S PS I+H+D D FF +V PE + +P AVAHG G S++
Sbjct: 405 -----TASKKKRPSGARRYILHVDFDSFFCAVSSLKLPEEERGKPAAVAHGTGPGSEI-- 457
Query: 1656 GVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYC 1715
R YG+ NGM++ A++ CP L+I+PYDF Y++ S
Sbjct: 458 ----------------ASCNYPARVYGVRNGMWMARAMELCPTLRILPYDFTAYEDASGK 501
Query: 1716 LYNLIASLTLNIEAVSL 1732
Y I S+ ++AVS+
Sbjct: 502 FYEAILSIGGVVQAVSI 518
Score = 63.9 bits (154), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 18/131 (13%)
Query: 1317 KKGGYMEAKKRKLEE----QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
K GG+ + +RK E+ EL A + + IF+GV V GYT+ P
Sbjct: 33 KFGGFADYFRRKQEKLQNLDSELRAAAKDKPQIFKGVVAHVTGYTQ-----------PPL 81
Query: 1373 EELKALMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGK 1430
L ++ HG + Y +T THIIAS +P TK +++KP W++DSI AG+
Sbjct: 82 HVLHKELVQHGAGFLQYLGGKTMATHIIASTMPPTKAIDYS-KYRVVKPAWVMDSIKAGR 140
Query: 1431 LLDHKKYLLYT 1441
+L + Y + T
Sbjct: 141 MLPWQDYRVIT 151
Score = 40.8 bits (94), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 1166 TQTVQVELREGVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQLI 1225
T+ + E + ++ PK + SS A+N +FL ++Y++SRLHHLST + K ++L
Sbjct: 342 TKPMTAEEHNALLLADPKIRKSS---AANPNFLKQYYSESRLHHLSTWKAQLK---SRLQ 395
Query: 1226 SLQQDKQLP 1234
+L K LP
Sbjct: 396 ALAASKALP 404
>gi|398396886|ref|XP_003851901.1| hypothetical protein MYCGRDRAFT_100453 [Zymoseptoria tritici IPO323]
gi|339471781|gb|EGP86877.1| hypothetical protein MYCGRDRAFT_100453 [Zymoseptoria tritici IPO323]
Length = 1164
Score = 189 bits (480), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/322 (34%), Positives = 169/322 (52%), Gaps = 59/322 (18%)
Query: 1898 IVSAVSCDEMYVDCSQL----------------LQELSLTPLQFASYLRETIAKETGCTC 1941
+V +VS DE +D S + + + LR+ + ++TGC
Sbjct: 461 LVQSVSIDEALIDISTICIAESGQDGVKRSEGAVHREQSKADELGQRLRDEVLEKTGCAV 520
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G+N LQA++A +KAKP GQ+ L P+ + DF+ + + LPGV S+ KL +G +
Sbjct: 521 SVGIGANILQAKVALRKAKPAGQYQLKPEDVLDFIGQLEVQKLPGVAWSIGGKLEEIGIK 580
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++++S +RL N +G K G ++++ RG D E+ + RKSVSAEVN+G+RF+NN
Sbjct: 581 LVKDIRDVSRERLINTLGPKTGEKIWEYARGIDKTEVGDQVVRKSVSAEVNWGVRFENND 640
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+++ F++ L GE+ KRL + ++KGK +T+K+M R+A AP + K LGHG CD KSS L
Sbjct: 641 QVDEFMQGLCGELNKRLVKERVKGKQLTMKVMRRAANAPLDPPKHLGHGKCDVYNKSSQL 700
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
GV + S I KE + +
Sbjct: 701 -------------------------------GVA------------TNDPSVITKEAIAM 717
Query: 2182 VNKLKVDPVELRGIGIQVSKLE 2203
+ K+ P ELRGIG+Q+ KLE
Sbjct: 718 LRSFKISPGELRGIGVQMQKLE 739
Score = 147 bits (371), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 135/532 (25%), Positives = 217/532 (40%), Gaps = 140/532 (26%)
Query: 1321 YMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALM 1379
Y KK KL+ E+ A + + IF+GV VNGYT+ PS +L ++
Sbjct: 40 YFRRKKIKLQNLDAEVRAQTSDKPQIFKGVTCHVNGYTQ-----------PSLNDLHTMI 88
Query: 1380 MLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAG-------- 1429
+ HGG + Y +T THIIASNL K ++ + +I+KP W+VDS+ AG
Sbjct: 89 VQHGGGFLQYLDGKTMVTHIIASNLTPKKKEEFR-RYRIVKPAWVVDSVKAGKLLPWNEY 147
Query: 1430 KLLDH---KKYLLYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSS-----------H 1475
++LD +K L + + Y E T+A + SS
Sbjct: 148 RMLDEGVAQKVLGFENGQVVTQANRRTQGYREQTDASWYTSQFNAASSTAGPSKPAFATQ 207
Query: 1476 TSTVSDSVDNTEE---------------------------------SKSEAVNSEESKSE 1502
T T S+ +++ ++ ++ E + + + E
Sbjct: 208 TVTPSEEIEDDDDFPLPEQAEPLPAEPSTDLQTPPPTSPPPHHSPATRDEPAQTRKREWE 267
Query: 1503 AANPIESKQTVKTKE-------SKLETVN--------ISAPKPQASSTKNASNEDFLGEF 1547
P S VK SKL + +S P + S+ N FL ++
Sbjct: 268 GLEPDYSMAVVKNSNVWDSVSPSKLAAMTAEQHNSLILSDPNIRKSTVVNPG---FLQQY 324
Query: 1548 YNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNP 1607
Y++SRLHHLST WK L ET +
Sbjct: 325 YDQSRLHHLST----------------------------WKADLKSQLQAIAAETSASQK 356
Query: 1608 SPSEPEP----VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEF 1663
S + P +MH+D D FF +V ++ HPE D+P VAHG G+ S++
Sbjct: 357 SRQKRLPGQRRYVMHVDFDSFFAAVSLKKHPEYNDKPTVVAHGNGSGSEIAS-------- 408
Query: 1664 DIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASL 1723
R++G+ NGM++ AL+ CP LKI+PYDF Y++ S Y+ I +
Sbjct: 409 ----------CNYPARKFGISNGMWMKRALELCPELKILPYDFPAYEDASRKFYDAIMAT 458
Query: 1724 TLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
+++VS+ +E+ ++ I + D + R + + REQ+ + L Q +
Sbjct: 459 GGLVQSVSI--DEALIDISTICIAESGQDGVKRSEGAVHREQSKADELGQRL 508
>gi|226292210|gb|EEH47630.1| DNA polymerase IV [Paracoccidioides brasiliensis Pb18]
Length = 1161
Score = 189 bits (480), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 115/323 (35%), Positives = 169/323 (52%), Gaps = 61/323 (18%)
Query: 1898 IVSAVSCDEMYVDCSQL-----------LQELSLTPLQ-----FASYLRETIAKETGCTC 1941
IV +VS DE VD + + + E S+ Q A LR+++ ++TGC
Sbjct: 460 IVQSVSIDEALVDITNICLDAGGSDGIGISEGSIYREQAKADEIAQKLRDSVKEQTGCNI 519
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N LQAR+A +KAKP GQF L P + DF+ + + DLPGV HSL KL LG
Sbjct: 520 SVGIGGNVLQARVALRKAKPAGQFQLKPDAVQDFIGELTVKDLPGVAHSLGGKLEELGVV 579
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ +S ++L + +G K G L+ + RG D+ E+ + RKSVSAE+++GIRF +
Sbjct: 580 FVKDIRELSKEKLTSSLGPKTGAKLWNYARGIDNTEVGIQVPRKSVSAEISWGIRFVSQT 639
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ E F++ L E+ +RL E +KGK +T+++M RS +AP E K LGHG CD KS +L
Sbjct: 640 QAEEFVQSLCDELHRRLVENLVKGKQLTMRIMKRSTDAPLEPVKHLGHGKCDTFNKSVAL 699
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL-KEVLF 2180
GV + AS I+ +E +
Sbjct: 700 -------------------------------GVA-------------TNASDIIGREAIS 715
Query: 2181 IVNKLKVDPVELRGIGIQVSKLE 2203
I+ K P +LRG+G+Q++KLE
Sbjct: 716 ILRGFKFSPGDLRGLGVQMTKLE 738
Score = 145 bits (365), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 143/521 (27%), Positives = 227/521 (43%), Gaps = 115/521 (22%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G Y KK KL+ E+ A+S + IF+GV VNGYT+ PS +L
Sbjct: 38 GDYFRRKKLKLQNLDAEVRASSPNNPPIFRGVVAHVNGYTQ-----------PSLNDLHR 86
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHK 1435
L++ HGG + Y +T THI+AS L K ++ + +I+KP W+V+S+ AG+LL
Sbjct: 87 LIVSHGGGFLQYLDGKTSATHILASVLTPKKREEFR-KYRIVKPGWVVESVKAGRLLPWD 145
Query: 1436 KY----------LLYTGTDAKPLTK--LLQKSYFENTEAPCCSKSLVETSSHTSTV-SDS 1482
K+ +L G D + ++ + ++Y ++T ETS +TS + S
Sbjct: 146 KFRVVDEGQSQKVLTFGGDGRVQSQANIQFRNYRDHT----------ETSWYTSQIKSGF 195
Query: 1483 VDNTEESKSE-AVNSEESKSEAANPIESKQTVKTKESKL--------------ETVNISA 1527
D TE+ ++ A++ +K AA S+ ES L E + S
Sbjct: 196 ADITEKMETTGAISPSGTKDTAAISPSSRDPNLAVESDLGNDMFPTQNDGIPDEAIAGSD 255
Query: 1528 PK------------PQASSTKNA-----------SNEDFLGEFYNKSRL-----HHLSTM 1559
P+ P + TK + E YN L + S +
Sbjct: 256 PQGELGITPSQRMSPISEETKRQGPVYDLQNHVDTKSSMTPEVYNAKLLSDPHYQNSSVV 315
Query: 1560 GSMF-KQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEP---- 1614
S F +Q+ E R H + WK L ++ S + P
Sbjct: 316 NSKFIQQFYCESRLHH---------LSTWKAELKAQIQSAAQDKGSTRKPARQRVPGVRR 366
Query: 1615 VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRM 1674
IMH+D D FF +V IR HPEL D+PVA+AHG G S++
Sbjct: 367 YIMHVDFDSFFAAVSIRKHPELADQPVAIAHGTGPGSEIAS------------------C 408
Query: 1675 GLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYT 1734
R +G+ NGM++ AL+ CPNLK++PYDF Y+E S Y++I S+ +++VS+
Sbjct: 409 NYPARSFGIKNGMWMKGALQMCPNLKVLPYDFAAYEEASRNFYDVILSIDGIVQSVSI-- 466
Query: 1735 NESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
+E+ ++ + D + + + REQ + +AQ +
Sbjct: 467 DEALVDITNICLDAGGSDGIGISEGSIYREQAKADEIAQKL 507
>gi|242764653|ref|XP_002340818.1| DNA damage repair protein Mus42, putative [Talaromyces stipitatus
ATCC 10500]
gi|218724014|gb|EED23431.1| DNA damage repair protein Mus42, putative [Talaromyces stipitatus
ATCC 10500]
Length = 1166
Score = 189 bits (480), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 123/353 (34%), Positives = 180/353 (50%), Gaps = 67/353 (18%)
Query: 1872 VWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVD-CSQLLQ----------ELSL 1920
+ EA ++ C+ + IV +VS DE VD +Q LQ E S+
Sbjct: 441 AYEEASRQFYECILAV--------DGIVQSVSIDEALVDITTQCLQAGGSDGRGISEGSI 492
Query: 1921 TPLQ-----FASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDF 1975
Q A LR I +TGC S G G N LQA++A +KAKP GQF L P + DF
Sbjct: 493 YREQAKADEIAKSLRGAIKYKTGCAVSVGIGGNILQAKVALRKAKPAGQFQLKPDEVLDF 552
Query: 1976 MLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDD 2035
+ N+ + DLPGV +SL KL +G + D++++S ++L + +G K G L+ + RG D
Sbjct: 553 IGNLTVQDLPGVAYSLGGKLEEIGVKFVKDMRDLSREKLVSHLGPKTGAKLWDYARGIDK 612
Query: 2036 KELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVR 2095
E+ + RKSVSAE+N+GIRF N + E F++ L+ E+ +RL E +KGK +T+++M R
Sbjct: 613 TEVGVQTMRKSVSAEINWGIRFVNQNQAEEFVQSLSEELHRRLVENLVKGKQLTIRVMRR 672
Query: 2096 SAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVC 2155
SA+AP E K LGHG CD KS +LL +A AS +G
Sbjct: 673 SADAPLEPVKHLGHGKCDVFNKS---------------VLLGVAA----NASDIIG---- 709
Query: 2156 DYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSKLEHQSKT 2208
KE + ++ +P +LRG+G+Q++KLE T
Sbjct: 710 --------------------KEAIAMLRSFGFNPGDLRGLGVQMTKLEPAKST 742
Score = 139 bits (350), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 132/511 (25%), Positives = 223/511 (43%), Gaps = 94/511 (18%)
Query: 1321 YMEAKKRKLEEQ-FELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALM 1379
Y KK KL+ + + ANS + IF+GV VNGYT+ PS +L L+
Sbjct: 40 YFRRKKLKLQNRDAHIRANSANNPPIFRGVVAHVNGYTQ-----------PSLNDLHQLI 88
Query: 1380 MLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY 1437
+ HGG + Y +T THIIAS+L K ++ + +I+KP W+VDS+ AG+LL Y
Sbjct: 89 VSHGGGFLQYLDGKTSATHIIASSLTPKKREEFRKY-RIVKPAWVVDSVKAGRLLPWDNY 147
Query: 1438 -LLYTGTDAKPL----------TKLLQKSY-------FENTEAPCCSKSLVETSSH---- 1475
++ G K L T L+++Y + N++ ++ L + +S
Sbjct: 148 RVVDEGASQKVLRFETGTLQTQTNDLERTYKDQTGNSWYNSQFRDATQDLQKETSKGSPS 207
Query: 1476 ------TSTVSDSVDNTEESKSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPK 1529
S++ +S +T+ ++ S E+ E+ +S T E S +
Sbjct: 208 KEKTDIMSSIPNSNADTDYGDFPSLVSPETTKESPAGRDSMATRNDSSIAFEEHEKSNQE 267
Query: 1530 PQASSTKN----------------ASNEDFLGEFYNKSRLHHLSTMGSMF-KQYVNELRE 1572
+N S+E++ + R+ S + F QY E R
Sbjct: 268 TTEDGVQNLTKVQLARETIPVKPGMSSEEYNALLLSDPRMKKSSVVNPDFLHQYYRESRL 327
Query: 1573 KHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEP----VIMHIDMDCFFVSV 1628
H + WK L +E N + P I+H+D D FF +V
Sbjct: 328 HH---------LSTWKAELKAKLQAITQEKSDSNKNIKRRVPGTRRYILHVDFDSFFAAV 378
Query: 1629 GI-RHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGM 1687
I +HHPEL D+PVA+AHG G+ S++ R +G+ NGM
Sbjct: 379 SIKKHHPELVDKPVAIAHGTGSGSEIAS------------------CNYPARAFGIKNGM 420
Query: 1688 FVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIR 1747
++ AL +CP+L+++PYDF Y+E S Y I ++ +++VS+ +E+ ++ + ++
Sbjct: 421 WMKGALDQCPDLEVLPYDFPAYEEASRQFYECILAVDGIVQSVSI--DEALVDITTQCLQ 478
Query: 1748 QEVLDDLSRQQSVLSREQNTTEPLAQDIICA 1778
D + + REQ + +A+ + A
Sbjct: 479 AGGSDGRGISEGSIYREQAKADEIAKSLRGA 509
Score = 46.6 bits (109), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 89/203 (43%), Gaps = 26/203 (12%)
Query: 1735 NESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIIC------ADSHTLVRTPS 1788
+E FL ALPEDIR EVL++ RQQ + R N P+ + + A+S T V T
Sbjct: 980 SEDFLAALPEDIRAEVLEE-HRQQRMRQR-SNLVAPVYRRTVASRPTTPAESSTAVATEK 1037
Query: 1789 P---SPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNL 1845
SP D T TS LS+ L+E T P +D+E + YL +
Sbjct: 1038 RIQLSPRADRP-----TFTSKKLSTLPDLREAITAWYSAFSREAPFVADVEALALYLKRV 1092
Query: 1846 V-EERHLNPIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSC 1904
V EER L V + +L + E + + + + + H SS+++ +
Sbjct: 1093 VLEERDLEKAVSVADWLAWLIRNDE---------DAMDRIATIIDHSQSSQAETTWDEAL 1143
Query: 1905 DEMYVDCSQLLQELSLTPLQFAS 1927
+ + + ++E L P +F++
Sbjct: 1144 NIVQRSVTAAVEERGLPPPKFSA 1166
>gi|348670854|gb|EGZ10675.1| hypothetical protein PHYSODRAFT_317799 [Phytophthora sojae]
Length = 975
Score = 188 bits (478), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 138/444 (31%), Positives = 210/444 (47%), Gaps = 86/444 (19%)
Query: 1319 GGYMEAKKRKLEEQFE-----LEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAE 1373
G YM K +KL Q E EA+SDS G+F+GV ++V+GYT VPS E
Sbjct: 23 GVYMSHKIQKLRNQNESAAGAAEADSDS-AGLFRGVHVYVDGYT-----------VPSKE 70
Query: 1374 ELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKPGDK---IIKPEWIVDSISAGK 1430
E++ LM+LHGG + HY++ R THIIA++LP +K+ +LK + +++P+WIV SI K
Sbjct: 71 EIRRLMLLHGGGFEHYDTGRVTHIIATHLPASKLLQLKRARRPLPVVRPDWIVQSIEQHK 130
Query: 1431 LLDHKKYLLYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESK 1490
LL + +L D + + VE + + + D +
Sbjct: 131 LLPVQPFLYAGFADPTQSSIFSLSGSMSASSTKVADSPAVELEDKRAPSAGAADPASKHA 190
Query: 1491 SEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPK-PQA--------SSTKNASNE 1541
SE+ + + ++ K E V + P+ P A S+TK +N
Sbjct: 191 PSTAGSEDEDGNEPD------LLAIEDEKEEEVGLDVPEDPPALPPVQNATSTTKLRTNS 244
Query: 1542 -----DFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITED 1596
+F+ F+ KSRLHH+ T + F+Q E + K ++G R +S
Sbjct: 245 TRDGPEFVRHFFAKSRLHHIGTWRATFQQKAAEFQAK----YKGGPVTRAPASS------ 294
Query: 1597 EDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAH-GKGNSSKVRE 1655
SD VI+H+DMDCFFV+V +R PELQ PVAVAH G SS++
Sbjct: 295 -------SDR--------VILHVDMDCFFVAVAVRGRPELQKVPVAVAHSGNAGSSEI-- 337
Query: 1656 GVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYC 1715
+ R G+G GMF+ A + CP L ++PY F+ + VS+
Sbjct: 338 ----------------SSCSYLARAKGVGAGMFMQTAKELCPELVVLPYQFDAIQRVSFQ 381
Query: 1716 LYNLIASLTLNIEAVSLYTNESFL 1739
+Y++ S T ++AVS +E+FL
Sbjct: 382 IYDIFFSHTPYVQAVS--CDEAFL 403
Score = 156 bits (395), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/263 (35%), Positives = 147/263 (55%), Gaps = 10/263 (3%)
Query: 1894 SESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQAR 1953
S + V AVSCDE +++ + ++ A +R+ I ++TGC S G N L +
Sbjct: 388 SHTPYVQAVSCDEAFLEFGK-----GTNGMEKAKTIRQQIFEQTGCPASVGVSFNVLLTK 442
Query: 1954 LATKKAKPNGQFHLTPQ-IISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLK 2012
L +KKAKP+G + + + +FML++ +SDLPGVG+ KL+ +G + G + +++
Sbjct: 443 LCSKKAKPDGIYQIEDRGQAEEFMLSLKVSDLPGVGYKTGAKLDDMGVEDVGQVISMTKG 502
Query: 2013 RLQNEVGNKNGLTLYKHCRGEDDKELTFEHQ--RKSVSAEVNYGIRFQNNQEMETFLKQL 2070
L +G +G L+ + RG D + L+ E RKSVSA VN+GIRF+ ++ FL L
Sbjct: 503 ELVRSLGKASGEMLFNYARGIDLRPLSMESNMMRKSVSAVVNFGIRFEKWEDATVFLMAL 562
Query: 2071 AGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSS--SLPIYERPL 2128
E+ RL +K++ KC+TL + R AP E SKF+GHGVCD +KS SL + +
Sbjct: 563 GEELSHRLRNLKVRTKCLTLLIKKRREGAPIEPSKFMGHGVCDNFSKSQVLSLATDDEVV 622
Query: 2129 IITYFLLLVRSAEAPREASKFLG 2151
I + L+R P E + +G
Sbjct: 623 IGKACIELLRQFNFPSEELRGVG 645
>gi|449299802|gb|EMC95815.1| hypothetical protein BAUCODRAFT_34584 [Baudoinia compniacensis UAMH
10762]
Length = 1208
Score = 188 bits (478), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 112/322 (34%), Positives = 171/322 (53%), Gaps = 59/322 (18%)
Query: 1898 IVSAVSCDEMYVDCSQLLQELSLT----------------PLQFASYLRETIAKETGCTC 1941
IV +VS DE VD S + S T A LR+ + ++TGC
Sbjct: 501 IVQSVSIDEALVDISAICFTESGTDGVKRNEGAVHREQRKADMVAQALRDEVLEKTGCAV 560
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G GSN LQA++A +KAKP GQ+ L P+ + DF+ + + +LPGV S+ KL +G +
Sbjct: 561 SVGIGSNILQAKVALRKAKPAGQYQLKPEEVLDFIGQLEVQNLPGVAWSIGGKLEDIGVK 620
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D+++++ ++L N +G K G L+ + RG D E+ + RKSVSAEVN+G+RF+N +
Sbjct: 621 FVKDIRDLTKEKLVNALGPKTGEKLWDYARGIDKSEVGEQVVRKSVSAEVNWGVRFENQE 680
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+++ F+ L GE+ KRL + ++KG+ +T+K+M R+A+APR+ K LGHG CD
Sbjct: 681 QVDEFMHGLCGELHKRLVKERVKGRQLTMKVMRRAADAPRDPPKHLGHGKCD-------- 732
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
TY KS L + + A+ I KE + +
Sbjct: 733 ---------TY--------------------------NKSMQLGVATNDATVIAKEAIAM 757
Query: 2182 VNKLKVDPVELRGIGIQVSKLE 2203
+ V P ELRGIG+Q+ KL+
Sbjct: 758 MKSFGVSPGELRGIGVQMQKLD 779
Score = 100 bits (250), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 108/240 (45%), Gaps = 56/240 (23%)
Query: 1542 DFLGEFYNKSRLHHLSTMGSMFKQYVNEL------REKHDGVFRGIEAIRKWKTSLGITE 1595
DFL ++Y +SRLHHLST + K + L +KH + + R++
Sbjct: 359 DFLEQYYRESRLHHLSTWKAELKSQLQALAAEKSASQKHK--LKKLPGQRRY-------- 408
Query: 1596 DEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVRE 1655
IMH+D D FF +V ++ +P+ +D P VAHG G+ S++
Sbjct: 409 --------------------IMHVDFDSFFAAVSLKKYPQCRDMPAVVAHGGGSGSEIAS 448
Query: 1656 GVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYC 1715
R+YG+ NGM++ A CP +KI+PYDF Y++ S
Sbjct: 449 ------------------CNYPARKYGISNGMWMRRAQDLCPEVKILPYDFPAYEDASRK 490
Query: 1716 LYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
Y+ I + +++VS+ +E+ ++ + D + R + + REQ + +AQ +
Sbjct: 491 FYDAIMATGGIVQSVSI--DEALVDISAICFTESGTDGVKRNEGAVHREQRKADMVAQAL 548
Score = 70.1 bits (170), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 65/120 (54%), Gaps = 15/120 (12%)
Query: 1321 YMEAKKRKLEEQ-FELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALM 1379
Y KK KL+ + L A S + IF+GV VNGYT+ PS +L L+
Sbjct: 40 YFRRKKIKLQNKDAVLRAQSADKPQIFKGVVCHVNGYTQ-----------PSLNDLHTLV 88
Query: 1380 MLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY 1437
+ +GG + Y +T THIIAS L K ++ K +++KP WIVDS++AGKLL Y
Sbjct: 89 VQYGGGFIQYLDGKTMVTHIIASQLTPKKKEEFK-RYRVVKPAWIVDSVNAGKLLPWDAY 147
>gi|119469761|ref|XP_001257973.1| DNA damage repair protein Mus42, putative [Neosartorya fischeri NRRL
181]
gi|119406125|gb|EAW16076.1| DNA damage repair protein Mus42, putative [Neosartorya fischeri NRRL
181]
Length = 1154
Score = 188 bits (478), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 119/323 (36%), Positives = 169/323 (52%), Gaps = 61/323 (18%)
Query: 1898 IVSAVSCDEMYVDCS-QLLQ----------ELSLTPLQ-----FASYLRETIAKETGCTC 1941
+V +VS DE VD + Q L+ E S+ Q A LRE++ TGC
Sbjct: 467 VVQSVSIDEALVDITMQCLEAGGSDGRGISEGSIYREQAKADEIAQNLRESVKAATGCDV 526
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N L A++A +KAKP GQF L P + D + ++ + DLPGVG+SL KL LG +
Sbjct: 527 SVGIGGNILLAKVALRKAKPAGQFQLKPDSVLDLIGDLTVQDLPGVGYSLGAKLEELGVK 586
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++++S ++L N +G K GL ++++ RG D E+ E RKSVSAEVN+GIRF N
Sbjct: 587 FVKDVRDVSREKLINHLGPKTGLKIWEYARGIDRTEVGNEVLRKSVSAEVNWGIRFVNQT 646
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ E F+K L E+ +RL + +KGK +TLK+M RSA+AP E K LGHG CD KS L
Sbjct: 647 QAEDFVKSLCEELHRRLSDNLVKGKQLTLKVMRRSADAPLEPVKHLGHGKCDVFNKSVVL 706
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL-KEVLF 2180
I + A ++L KE
Sbjct: 707 GI--------------------------------------------ATNAPEVLAKEATS 722
Query: 2181 IVNKLKVDPVELRGIGIQVSKLE 2203
++ + P +LRG+G+Q++KLE
Sbjct: 723 MLRSFGITPGDLRGLGVQMTKLE 745
Score = 137 bits (344), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 130/519 (25%), Positives = 215/519 (41%), Gaps = 104/519 (20%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G YM KK KL+ E+ ++S R IF+GV VNGYT+ PS ++L
Sbjct: 38 GDYMRRKKIKLQNLDAEIRSSSPDRPPIFRGVVAHVNGYTQ-----------PSLQDLHR 86
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL--- 1432
L++ HGG + Y +T THIIAS+L K ++ K +I+KP W+V+SI AG+LL
Sbjct: 87 LIVSHGGGFLQYLDGKTVATHIIASSLTPKKREEFK-RYRIVKPAWVVESIKAGRLLPWD 145
Query: 1433 ----------------DHKKYLLYTGTDAKPLTKLLQKSYF------------------E 1458
D+ + L T S++ E
Sbjct: 146 AFRVVDEGHAQKVLNFDNGRLLSQANTQQSGYRDQSDSSWYTSRLKGLGTPAEEVPSDAE 205
Query: 1459 NTEAP--CCSKSLVETSSHTSTVSDSVDNTEESKSEAVN----------SEESKSEAANP 1506
E P S + ++ T+T SD D + S+ S+ K A
Sbjct: 206 PPEVPEQTTQASAADEATKTATQSDYGDFPSFASSDPAGNIPDLPKSERSDSPKHLDAED 265
Query: 1507 IESKQTVKTKESKLETVNISAPKPQASSTKNASNE----DFLGEFYNKSRLHHLSTMGSM 1562
I + + + + + + P A + A E ++ + R+ + S +
Sbjct: 266 IAASEVGRRMPTHSPAIVTNQDPPLAGESVPAKTEMTPEEYNAQLLADPRMRNSSVVNPE 325
Query: 1563 F-KQYVNELREKHDGVFRGIEAIRKWKTSL-----GITEDEDLEETFSDNPSPSEPEPVI 1616
F +Q+ E R H + WK L +D+ + P P I
Sbjct: 326 FLQQFYRESRLHH---------LSTWKAELKAQLQAAAKDKSHSQAGRKKPVPGA-RRYI 375
Query: 1617 MHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGL 1676
+H+D D FF +V HPEL +PVA+AHG G+ S++
Sbjct: 376 LHVDFDSFFAAVSTLKHPELIGQPVAIAHGTGSGSEIAS------------------CNY 417
Query: 1677 NTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNE 1736
R G+ NGM++ AL+ CP LK++PYDF Y+E S Y+ + ++ +++VS+ +E
Sbjct: 418 PARARGIKNGMWMKGALQACPELKVLPYDFPAYEEASKKFYSAVLAVDGVVQSVSI--DE 475
Query: 1737 SFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
+ ++ + + D + + REQ + +AQ++
Sbjct: 476 ALVDITMQCLEAGGSDGRGISEGSIYREQAKADEIAQNL 514
>gi|296812877|ref|XP_002846776.1| DNA repair protein REV1 [Arthroderma otae CBS 113480]
gi|238842032|gb|EEQ31694.1| DNA repair protein REV1 [Arthroderma otae CBS 113480]
Length = 1152
Score = 188 bits (477), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 131/393 (33%), Positives = 189/393 (48%), Gaps = 73/393 (18%)
Query: 1898 IVSAVSCDEMYVDCSQL-----------LQELSLTPLQ-----FASYLRETIAKETGCTC 1941
+V +VS DE +D S L + E S+ Q A LR++I ++TGC
Sbjct: 445 VVQSVSIDEALIDISTLCIQAGGSDGRAMSESSIYQEQEKADMIARNLRDSIKQKTGCHV 504
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N LQARLA +KAKP GQF L P + DF+ ++DLPGV HSL KL LG +
Sbjct: 505 SVGIGQNVLQARLALRKAKPAGQFQLKPDDMLDFIGEFTVTDLPGVAHSLGAKLGELGIK 564
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ +S ++L +G K G L+++ RG D+ + + RKSVSAE+N+GIRF N
Sbjct: 565 YVKDIRQLSREKLTGHLGPKTGAKLWEYSRGIDNTVVGEQAIRKSVSAEINWGIRFINQT 624
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ + F+ L E+ +RL E +KGK +T+++M R+A++P + K LGHG CD KS L
Sbjct: 625 QADDFVHSLCEELHRRLLENGVKGKQLTMRIMRRAADSPADPPKHLGHGKCDTFNKSVVL 684
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
P AS +G KE + I
Sbjct: 685 -------------------HTPTNASDVIG------------------------KEAVSI 701
Query: 2182 VNKLKVDPVELRGIGIQVSKLEHQSKTLATIDTFFTNKGKPPD---QLNNPRPGPSNSTI 2238
+ P +LRG+G+Q++K L + T T+ G+P QL P P+ I
Sbjct: 702 LRSFNFSPGDLRGLGVQMTK-------LTPVKT--TSSGEPASGQQQLQFKAPSPNQRKI 752
Query: 2239 TPGPSNSTLPPGPSNSTLPPGPSNSTLLPGPSF 2271
+ L P + P P S+L GPS
Sbjct: 753 VSQDPDEVLSPTKGENASPHLP--SSLTAGPSL 783
Score = 145 bits (366), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 129/514 (25%), Positives = 220/514 (42%), Gaps = 118/514 (22%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G Y KK KL+ E+ A+S + IF+GV VNGYT+ PS +L
Sbjct: 40 GDYFRRKKIKLQNLDAEIRASSPNNPSIFKGVVAHVNGYTQ-----------PSLNDLHR 88
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHK 1435
+++ HGG + Y +T THIIAS L K ++ + +++KP W+V+SI AG++L +
Sbjct: 89 MIVSHGGGFLQYLDGKTAATHIIASALTPKKREEFR-RYRVVKPAWVVESIQAGRMLPWE 147
Query: 1436 KYLLYTGTDAKPLTKL------------LQKSYFENTEAPCCSKSLVE---TSSHTSTVS 1480
Y L ++ + KL +SY T++ C S + ++S +
Sbjct: 148 TYRLLDEGASQKVLKLDTSGRISAQNNSQSQSYKSQTDS-CWYTSQLNKDPSASDAPEIG 206
Query: 1481 DSVDNTEESKSEAVNSEESKSEAANPIESKQTVKTKESKLETV----NISAPKPQASSTK 1536
++ N + +K + E++ + T L ++ N + +P+ ST+
Sbjct: 207 EAYPNADIAKEPDLEEEQATDIKDTSLGHDNATPTTPEDLVSLGFDDNSTPAQPEQFSTE 266
Query: 1537 NAS-------------------------------NEDFLGEFYNKSRLHHLSTMGSMFKQ 1565
+ N DF+ ++Y +SRLHHLST
Sbjct: 267 QGNKNPNSDAKQLTPEEHNALLLSKAHIRQSSVVNPDFIQQYYRESRLHHLST------- 319
Query: 1566 YVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPS----PSEPEPVIMHIDM 1621
WK L +E S P+ P I+H+D
Sbjct: 320 ---------------------WKAELKAQLQSIAQERGSMKPTLVKRPPGTRRYILHVDF 358
Query: 1622 DCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREY 1681
D FF +V I+ HPEL D+PVA+AHG G S++ R++
Sbjct: 359 DSFFAAVSIQKHPELADKPVAIAHGTGPGSEIAS------------------CNYPARKF 400
Query: 1682 GLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNA 1741
+ NGM++ AL++CP LK++ YDF Y+E S Y I + +++VS+ +E+ ++
Sbjct: 401 NVRNGMWMKGALERCPELKVLSYDFPAYEEASRKFYESILDIDGVVQSVSI--DEALIDI 458
Query: 1742 LPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
I+ D + +S + +EQ + +A+++
Sbjct: 459 STLCIQAGGSDGRAMSESSIYQEQEKADMIARNL 492
Score = 43.1 bits (100), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 70/140 (50%), Gaps = 27/140 (19%)
Query: 1738 FLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVR----TPSPSPIL 1793
FL ALPEDIRQE+L++ +RQ + REQ A + +T +R SP+P+
Sbjct: 967 FLAALPEDIRQEILEE-NRQARL--REQGGLNLAA----VHERNTRMRQNKANNSPAPV- 1018
Query: 1794 DMSTSIL--------DTTTSHILSSNVSLQEMRTMLREWMC---ESQPEPSDIEMFSEYL 1842
+ +L T TS LS SL E+R L EW + +P D+E ++YL
Sbjct: 1019 EPEQKLLRFDPRPAKPTFTSKRLS---SLPELREALSEWHSSFEDEEPYEEDVEALTKYL 1075
Query: 1843 SNLV-EERHLNPIVILLRFL 1861
+V EE+ ++ L R+L
Sbjct: 1076 RRVVLEEKDISKATDLARWL 1095
>gi|109289993|ref|YP_656238.1| gp39plus60 DNA topoisomerase II large subunit [Aeromonas phage 25]
gi|104345666|gb|ABF72566.1| gp39plus60 DNA topoisomerase II large subunit [Aeromonas phage 25]
Length = 607
Score = 187 bits (476), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 174/619 (28%), Positives = 284/619 (45%), Gaps = 105/619 (16%)
Query: 43 EHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQR- 101
EH++LRP+ Y+GSV +L + + ++YVPGL KI DEI+ N+ D R
Sbjct: 12 EHVILRPNMYVGSVAYEPHERFLFGK------YQSVSYVPGLVKIIDEIIDNSVDEGIRT 65
Query: 102 DPKM-NCIKITVNQETNTISVWNNGKGIP--VVEHKDEKMFVPTMIFGHLLTSSNYNDEE 158
D K N I I + +++V +NG+GIP +V D +M P + + SN++D +
Sbjct: 66 DFKFANKIDIRFDLLEGSVTVVDNGRGIPQSMVNTPDGEMPKPVAAWTQTMAGSNFDDTK 125
Query: 159 DKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSF 218
+V+ G NG G+ L N FS F+ ET C K+F
Sbjct: 126 --------------------------RVSMGMNGVGSSLTNFFSKTFIGET-CD--GKNF 156
Query: 219 KQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAST 278
V + + + E K G K T + F PD F+ ++D+ +VD+I+ R +
Sbjct: 157 LTVTCSDGASQVNWETKPG-KIKGTSVYFIPDEKHFEGKTIDQQIVDIISDRITALSVVF 215
Query: 279 KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQV 338
+K +NGE +K F +Y K++ D +I EN N + +AI S GF+QV
Sbjct: 216 PKIKFTINGEVASMK-FAEYAKMFGDES--------LILENDN--FSIAICNSPEGFRQV 264
Query: 339 SFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMA 398
S+VN + GG H+D +VD I ++I +K+K+K ++ +K ++
Sbjct: 265 SYVNGLNIKNGGSHIDYLVDGIADELIPSIKRKHK----------------IEISKARIK 308
Query: 399 KTLIDIGVRLGGMALKPF-------------QVKNHI---------WIFINCLIVNPTFD 436
+ L I V + GM+ F +VK+HI I N I+ P +
Sbjct: 309 ECLTMI-VAVRGMSNLRFDSQTKERLTNPLGEVKSHIELDFKKLGKQIMNNDAILMPIIE 367
Query: 437 SQTKENMTLQKGSFGSTCVPKLEDAND----AGTKNSI--DCTLILTEGDSAKSLAVSGL 490
+ ++ +K + + AG+ I + TL LTEGDSA +S
Sbjct: 368 AALARHLAAEKAALTKAQKAAAKTKVAKHIKAGSWGDISKETTLFLTEGDSAIGYLLS-- 425
Query: 491 GVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRY 550
V + +G + LRGK++N +L+N E+ ++ I+GL + +D++ +Y
Sbjct: 426 -VRDSELHGGYALRGKVMNTWGMKGSDVLKNRELADICAIMGLDLANP----DDVENRKY 480
Query: 551 GRLMIMTDQDQDG-SHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSL 609
+ IMTD D DG I ++ F WP L L + TP++ +K ++ FY++
Sbjct: 481 KNVAIMTDADPDGQGSIYPCLLAFFSR-WPKLYDLGCVRFVKTPVVILSKGKQTKWFYTI 539
Query: 610 PEFEEWKEETTNWHTYKIK 628
EF+ KE+ W IK
Sbjct: 540 TEFDAQKEKYKGWELRYIK 558
>gi|297794885|ref|XP_002865327.1| polymerase ATREV1-1105 [Arabidopsis lyrata subsp. lyrata]
gi|297311162|gb|EFH41586.1| polymerase ATREV1-1105 [Arabidopsis lyrata subsp. lyrata]
Length = 1105
Score = 187 bits (475), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 164/505 (32%), Positives = 239/505 (47%), Gaps = 127/505 (25%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRG------GIFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
G YME K RKL+ QFE EA++ SRG IFQGV+IFV+G+T +PS
Sbjct: 55 GSYMEVKNRKLQNQFETEASASSRGISGSEKLIFQGVSIFVDGFT-----------IPSH 103
Query: 1373 EELKALMMLHGGIYHHYESSRT-THIIASNLPHTKIKKLKP---GDKIIKPEWIVDSISA 1428
+EL+A M+ +GG + +Y S R+ THII SNLP +K+K L+ G ++KP WIVDSISA
Sbjct: 104 QELRAYMIKYGGRFENYFSRRSVTHIICSNLPDSKVKNLRAFSRGLPVVKPTWIVDSISA 163
Query: 1429 GKLLDHKKYLLYTGTDAKP-LTKLLQ-KSYFENTEA-------PCCSKSLVETSS----- 1474
+LL Y L D +P L+ +S+ A P S E S
Sbjct: 164 NRLLGWVPYQLDQLNDTQPKLSAFFAPRSHLTPRMASPVTSCPPDTGYSEAEEGSSIRAE 223
Query: 1475 HTSTVSDSVDN--------------TEESKSEAVNSEESKSE--AANPIESKQTVKTKES 1518
H D VD+ TEE+ + + S E +E A IE K+ +S
Sbjct: 224 HFEEARDHVDDEFDGVYIGNTTPELTEETGTGDLKSSEMNAERLANYDIEEKEVSSELQS 283
Query: 1519 --KL------ETVNIS--------APKPQASSTKNASNED--FLGEFYNKSRLHHLSTMG 1560
KL ++V+ + A +S+ ++++ ED F+ ++ SRLH + T
Sbjct: 284 TTKLHPAADNKSVHANGKNDGKSIATAAGSSARRHSTLEDPNFVENYFKNSRLHFIGT-- 341
Query: 1561 SMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHID 1620
+ N R++ G G+ KW S T + D + T I+HID
Sbjct: 342 -----WRNRYRKRFHGPSNGL----KWADSGQNTAEMDKKST-------------IIHID 379
Query: 1621 MDCFFVSVGIRHHPELQDEPVAVAHG---KGNSSKVREGVDRQAEFDIYRQRTMNRMGLN 1677
+DCFFVSV I++ EL D+PVAV H KG + ++
Sbjct: 380 LDCFFVSVVIKNRLELHDKPVAVCHSDNPKGTAE-------------------ISSANYP 420
Query: 1678 TREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNES 1737
R YG+ GMFV HA + CP L IVPY+FE Y+EV+ Y+++ ++A+S +E+
Sbjct: 421 ARAYGVKAGMFVRHAKELCPQLVIVPYNFEAYEEVADQFYDILHRHCRKVQALS--CDEA 478
Query: 1738 FLNA----------LPEDIRQEVLD 1752
FL+ L IR E+L+
Sbjct: 479 FLDVSDLRDVEPGFLASTIRNEILE 503
Score = 167 bits (424), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 121/383 (31%), Positives = 183/383 (47%), Gaps = 70/383 (18%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
V A+SCDE ++D S L + P AS +R I + TGC+ S G G L ARLAT+
Sbjct: 470 VQALSCDEAFLDVSDLRD---VEPGFLASTIRNEILETTGCSASAGIGGTMLMARLATRV 526
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKP GQ +++ + + +F+ +P+ LPGVG L KL QTCG L+ IS LQ +
Sbjct: 527 AKPAGQLYISAEKVEEFLDGLPVGTLPGVGSVLKEKLVKQNIQTCGQLRLISKDSLQKDF 586
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQE----METFLKQLAGEV 2074
G K G L+ + RG D + +T + KS+ AEVN+G+RF++ Q+ ++ FL+ L EV
Sbjct: 587 GVKTGEMLWSYSRGLDLRSVTAVQESKSIGAEVNWGVRFRDQQDVCILVQHFLQCLCKEV 646
Query: 2075 EKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFL 2134
RL+ +M G+ TLK+ R +A E +K++G G CD +++S ++P
Sbjct: 647 SLRLQGCEMIGRTFTLKIKKRKNDA-EEPTKYMGCGDCDNLSRSITVPA----------- 694
Query: 2135 LLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRG 2194
E + SK L C +D E+RG
Sbjct: 695 -ATDDVEVLQRISKKLFGSFC-------------------------------LDVKEVRG 722
Query: 2195 IGIQVSKLEHQ------SKTL--------ATI-----DTFFTNKGKPPDQLNNPRPGPSN 2235
+G+QVSKL+ S+TL A++ D F K + N G +
Sbjct: 723 VGLQVSKLDSADPSNKGSRTLKSWLSSASASVQIEQDDNVFAAKVRENSDCNRHVTGGVS 782
Query: 2236 STITPGPSNSTLPPGPSNSTLPP 2258
+ S++ G +NS+LPP
Sbjct: 783 ILRESNSAESSIQSGDTNSSLPP 805
>gi|255932959|ref|XP_002557950.1| Pc12g11320 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582569|emb|CAP80759.1| Pc12g11320 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1163
Score = 187 bits (475), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 113/321 (35%), Positives = 169/321 (52%), Gaps = 59/321 (18%)
Query: 1899 VSAVSCDEMYVDCSQL-----------LQELSLTPLQ-----FASYLRETIAKETGCTCS 1942
V +VS DE +D + L + E S+ Q A LR++I K+TGC S
Sbjct: 468 VQSVSIDEALIDITNLCLEAGGSDGKAISEGSIYREQAKADEIAQDLRDSIKKKTGCAVS 527
Query: 1943 TGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQT 2002
G G+N L A+++ ++AKP GQF L P + DF+ ++ + DLPGVG+S+ KL L +
Sbjct: 528 VGIGNNILLAKVSLRRAKPAGQFQLKPDAVLDFIGDLTVCDLPGVGNSMAIKLEELNVKF 587
Query: 2003 CGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQE 2062
D++++S +RL + +G K G+ L+++ RG D E+ + RKSVSAEVN+GIRF N +
Sbjct: 588 VKDIRDLSKERLISHLGPKTGIKLWEYARGIDRTEVGDQTMRKSVSAEVNWGIRFVNQDQ 647
Query: 2063 METFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLP 2122
+ F++ L E+ +RL E +KGK +TLK+M RS +AP E K LGHG CD KS +L
Sbjct: 648 ADDFVRSLCEELNRRLTENLVKGKQLTLKVMRRSMDAPLEPVKHLGHGKCDTFNKSVAL- 706
Query: 2123 IYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIV 2182
GV + A I KE + ++
Sbjct: 707 ------------------------------GVATNV------------AETIGKEAISML 724
Query: 2183 NKLKVDPVELRGIGIQVSKLE 2203
P +LRG+G+Q++KLE
Sbjct: 725 KSFNFSPGDLRGLGVQMTKLE 745
Score = 151 bits (382), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 140/519 (26%), Positives = 226/519 (43%), Gaps = 104/519 (20%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G YM KK KL+ + A +D IF+GV VNGYT+ PS ++L
Sbjct: 38 GDYMRRKKMKLQNLDAVIRAATDDCPPIFRGVVAHVNGYTQ-----------PSLQDLHR 86
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHK 1435
L++ HGG + Y +T THIIAS L K ++ + +I+KP W+ DSI AG+LL
Sbjct: 87 LIVSHGGGFLQYLDGKTAATHIIASALTPKKREEFR-RYRIVKPTWVTDSIEAGRLLPWD 145
Query: 1436 KYLLYTGTDAKPLTKLLQKSYFENTEAPCCS-KSLVETSSHTSTVSDSVDNTEE----SK 1490
++ L A+ + K + T +P K +S ++S + D N E SK
Sbjct: 146 EFRLVDEGQAQRVLKFDDGRFISQTNSPRLGYKDQSRSSWYSSQLRDMSRNKERLGSPSK 205
Query: 1491 -------------------SEAVNSE---------ESKSEAANPIESKQTVKTKESKL-- 1520
S+A S+ E + EA P ++T + ++
Sbjct: 206 PVTPSMRSKTPPMVTPTMPSQASQSDYGDFPSFTMEKEDEAHGPQHQQETPASDVAQTTM 265
Query: 1521 -------ETVNISAPKP-----------QASSTKNA-SNEDFLGEFYNKSRLHHLSTMGS 1561
+ V IS P P Q S+T ++E++ + R+ S
Sbjct: 266 PQQIPNSDQVPIS-PDPLVDLGTTSLLDQTSATNPVLTSEEYNARLLSDPRMQKSSAANP 324
Query: 1562 MF-KQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEP----VI 1616
F +Q+ E R H + WK L +E S +P P I
Sbjct: 325 EFLQQFYRESRLHH---------LSTWKAELKAQLQVATKENAQSQRSKKKPAPGSRRYI 375
Query: 1617 MHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGL 1676
+H+D D FF +V + +HPELQD+PVA+AHG G+ S++
Sbjct: 376 LHVDFDSFFAAVSVLNHPELQDKPVAIAHGPGSGSEIAS------------------CNY 417
Query: 1677 NTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNE 1736
R G+ NGM++ AL+ CP+LK++PYDF Y++ S Y+ I ++ +++VS+ +E
Sbjct: 418 PARARGVKNGMWMKGALQLCPDLKVLPYDFPAYEDASRKFYSSILAIDGTVQSVSI--DE 475
Query: 1737 SFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
+ ++ + D + + + REQ + +AQD+
Sbjct: 476 ALIDITNLCLEAGGSDGKAISEGSIYREQAKADEIAQDL 514
>gi|186529382|ref|NP_001119373.1| DNA repair protein REV1 [Arabidopsis thaliana]
gi|384950720|sp|A3EWL3.1|REV1_ARATH RecName: Full=DNA repair protein REV1; Short=AtREV1; AltName:
Full=Rev1-like terminal deoxycytidyl transferase
gi|125656400|gb|ABN48548.1| polymerase ATREV1-1105 [Arabidopsis thaliana]
gi|332007774|gb|AED95157.1| DNA repair protein REV1 [Arabidopsis thaliana]
Length = 1105
Score = 186 bits (472), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 160/532 (30%), Positives = 237/532 (44%), Gaps = 118/532 (22%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGG------IFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
G YME K RKL+ QFE EA++ SRG IFQGV+IFV+G+T +PS
Sbjct: 55 GSYMEVKNRKLQNQFETEASAASRGVSGSEKLIFQGVSIFVDGFT-----------IPSH 103
Query: 1373 EELKALMMLHGGIYHHYESSRT-THIIASNLPHTKIKKLKP---GDKIIKPEWIVDSISA 1428
+ELK MM +GG + +Y S R+ THII SNLP +K+K L+ G ++KP WIVDSISA
Sbjct: 104 QELKGYMMKYGGRFENYFSRRSVTHIICSNLPDSKVKNLRTFSRGLPVVKPTWIVDSISA 163
Query: 1429 GKLLDHKKYLLYTGTD-------------------AKPLTKLLQKSYFENTEAPCCSKS- 1468
+LL Y L D A P+T + + E ++
Sbjct: 164 NRLLGWVPYQLDQLNDTQPKLSAFFAPRSHLTPQMASPVTSFQPDTGYSEAEEGSSIRAD 223
Query: 1469 -LVETSSHTSTVSDSV--DNTEESKSEAVNSEESKSEAANP-------IESKQTVKTKES 1518
E H D V +NT +E + + KS N IE K+ +S
Sbjct: 224 DSEEARDHIDDEIDGVYIENTTPELTEQTGTGDLKSSEMNAEGLGNYDIEEKEVSSELQS 283
Query: 1519 KLETVNIS----------------APKPQASSTKNASNED--FLGEFYNKSRLHHLSTMG 1560
+ S A +S+ ++++ ED F+ ++ SRLH + T
Sbjct: 284 TTNLHSTSDNKSVHANGKNGGKSIATAAGSSTRRHSTLEDPNFVENYFKNSRLHFIGT-- 341
Query: 1561 SMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHID 1620
+ N R++ G G+ KW S N + + I+HID
Sbjct: 342 -----WRNRYRKRFHGSSNGL----KWADS-------------GQNTAEMAKKSTIIHID 379
Query: 1621 MDCFFVSVGIRHHPELQDEPVAVAHG---KGNSSKVREGVDRQAEFDIYRQRTMNRMGLN 1677
+DCFFVSV I++ EL D+PVAV H KG + ++
Sbjct: 380 LDCFFVSVVIKNRLELHDKPVAVCHSDNPKGTAE-------------------ISSANYP 420
Query: 1678 TREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNES 1737
R YG+ GMFV HA CP L IVPY+FE Y+EV+ Y+++ ++A+S +E+
Sbjct: 421 ARAYGVKAGMFVRHAKDLCPQLVIVPYNFEAYEEVADQFYDILHRHCRKVQALS--CDEA 478
Query: 1738 FLNALP-EDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPS 1788
FL+ D+ EVL R + + + + + + ++ A T V P+
Sbjct: 479 FLDVSDLSDVETEVLASTIRNEILETTGCSASAGIGGTMLMARLATRVAKPA 530
Score = 168 bits (425), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 120/383 (31%), Positives = 181/383 (47%), Gaps = 70/383 (18%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
V A+SCDE ++D S L + AS +R I + TGC+ S G G L ARLAT+
Sbjct: 470 VQALSCDEAFLDVSDLSD---VETEVLASTIRNEILETTGCSASAGIGGTMLMARLATRV 526
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKP GQ +++ + + +F+ +P+ LPGVG L KL QTCG L+ IS LQ +
Sbjct: 527 AKPAGQLYISAEKVEEFLDQLPVGTLPGVGSVLKEKLVKQNIQTCGQLRLISKDSLQKDF 586
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQE----METFLKQLAGEV 2074
G K G L+ + RG D + +T + KS+ AEVN+G+RF++ Q+ ++ FL+ L EV
Sbjct: 587 GVKTGEMLWSYSRGLDLRSVTAVQESKSIGAEVNWGVRFRDQQDVFILVQHFLQCLCKEV 646
Query: 2075 EKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFL 2134
RL+ +M G+ TLK+ R +A E +K++G G CD +++S ++P +
Sbjct: 647 SLRLQGCEMIGRTFTLKIKKRKKDA-EEPTKYMGCGDCDNLSRSITVPAATDDI------ 699
Query: 2135 LLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRG 2194
E + SK L C +D E+RG
Sbjct: 700 ------EVLQRISKKLFGSFC-------------------------------LDVKEVRG 722
Query: 2195 IGIQVSKLEHQ------SKTLATI-------------DTFFTNKGKPPDQLNNPRPGPSN 2235
+G+QVSKL+ S+TL + D F K + N P G +
Sbjct: 723 VGLQVSKLDSADPSNKGSRTLKSWLSSAPAVVQIEQDDNVFAAKVRENSDCNRPVTGGVS 782
Query: 2236 STITPGPSNSTLPPGPSNSTLPP 2258
S++ G +NS+LPP
Sbjct: 783 RLRESNSEESSIQSGDTNSSLPP 805
>gi|423262099|ref|YP_007010698.1| DNA topoisomerase II large subunit [Aeromonas phage Aes508]
gi|402761977|gb|AFQ97091.1| DNA topoisomerase II large subunit [Aeromonas phage Aes508]
Length = 607
Score = 186 bits (472), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 173/618 (27%), Positives = 283/618 (45%), Gaps = 103/618 (16%)
Query: 43 EHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQR- 101
EH++LRP+ Y+GSV +L + + ++YVPGL KI DEI+ N+ D R
Sbjct: 12 EHVILRPNMYVGSVAYEPHERFLFGK------YQSVSYVPGLVKIIDEIIDNSVDEGIRT 65
Query: 102 DPKM-NCIKITVNQETNTISVWNNGKGIP--VVEHKDEKMFVPTMIFGHLLTSSNYNDEE 158
D K N I I + +++V +NG+GIP +V D +M P + + SN+
Sbjct: 66 DFKFANKIDIRFDLLEGSVTVVDNGRGIPQSLVNTPDGEMPKPVAAWTQTMAGSNF---- 121
Query: 159 DKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSF 218
D+ ++V+ G NG G+ L N FS F+ ET C K+F
Sbjct: 122 ----------------------DDTNRVSMGMNGVGSSLTNFFSKTFIGET-CD--GKNF 156
Query: 219 KQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAST 278
V + + + E K G K T + F PD F+ ++D+ +VD+I+ R +
Sbjct: 157 LTVTCSDGASQVNWETKPG-KIKGTSVYFIPDEKHFEGKTIDQQIVDIISDRITALSVVF 215
Query: 279 KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQV 338
+K +NGE +K F +Y K++ D +I EN N + +AI S GF+QV
Sbjct: 216 PKIKFTINGEVASMK-FAEYAKMFGDES--------LILENDN--FSIAICNSPEGFRQV 264
Query: 339 SFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMA 398
S+VN + GG H+D ++D I ++I +K+K+K ++ +K ++
Sbjct: 265 SYVNGLNIKNGGSHIDYLIDGISDELIPSIKRKHK----------------IEISKARIK 308
Query: 399 KTLIDIGVRLGGMALK-----------PF-QVKNHI---------WIFINCLIVNPTFDS 437
+ L I V G L+ P +VK+HI I N I+ P ++
Sbjct: 309 ECLTMIVVVRGMSNLRFDSQTKERLTNPLGEVKSHIELDFKKLGKQIMNNDAILMPIIEA 368
Query: 438 QTKENMTLQKGSFGSTCVPKLEDAND----AGTKNSI--DCTLILTEGDSAKSLAVSGLG 491
++ +K + + AG+ I + TL LTEGDSA +S
Sbjct: 369 ALARHLAAEKAALTKAQKAAAKTKVAKHIKAGSWGDISKETTLFLTEGDSAIGYLLS--- 425
Query: 492 VVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYG 551
V + +G + LRGK++N +L+N E+ ++ I+GL + +D++ +Y
Sbjct: 426 VRDSELHGGYALRGKVMNTWGMKGSDVLKNRELADICAIMGLDLANP----DDVENRKYK 481
Query: 552 RLMIMTDQDQDG-SHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLP 610
+ IMTD D DG I ++ F WP L L + TP++ +K ++ FY++
Sbjct: 482 NVAIMTDADPDGQGSIYPCLLAFFSR-WPKLYDLGCVRFVKTPVVILSKGKQTKWFYTIT 540
Query: 611 EFEEWKEETTNWHTYKIK 628
EF+ KE+ W IK
Sbjct: 541 EFDAQKEKYKGWELRYIK 558
>gi|302655750|ref|XP_003019659.1| hypothetical protein TRV_06288 [Trichophyton verrucosum HKI 0517]
gi|291183396|gb|EFE39014.1| hypothetical protein TRV_06288 [Trichophyton verrucosum HKI 0517]
Length = 1191
Score = 186 bits (472), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/321 (35%), Positives = 168/321 (52%), Gaps = 59/321 (18%)
Query: 1898 IVSAVSCDEMYVDCSQL-----------LQELSLTPLQ-----FASYLRETIAKETGCTC 1941
IV +VS DE VD S L + E S+ Q A LR++I ++TGC
Sbjct: 481 IVQSVSIDEALVDISSLCIQAGGSDGKAISESSIYREQEKADTIAQKLRDSIKQKTGCHV 540
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N LQARLA KKAKP GQF L P+ + DF+ ++DLPGV HSL KL L +
Sbjct: 541 SVGIGQNILQARLALKKAKPAGQFQLKPENMLDFIGEFSVTDLPGVAHSLGTKLEELSVK 600
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ +S ++L +G K G L+++ RG D+ + + RKSVSAE+N+GIRF N
Sbjct: 601 YVKDIRQLSREKLTGHLGPKTGAKLWEYARGIDNTVVGEQVIRKSVSAEINWGIRFTNQA 660
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ + F++ L+ E+ +RL E +KG+ +T+++M R+A++P + K LGHG CD KS
Sbjct: 661 QADEFVRSLSEELHRRLLENGVKGRQLTMRIMRRAADSPVDPPKHLGHGKCDTFNKS--- 717
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
II + P AS +G KE + +
Sbjct: 718 -------IILH---------TPTNASDIIG------------------------KEAVSV 737
Query: 2182 VNKLKVDPVELRGIGIQVSKL 2202
+ P +LRG+G+Q++KL
Sbjct: 738 LRSFNFSPGDLRGLGVQMTKL 758
Score = 158 bits (400), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 141/509 (27%), Positives = 221/509 (43%), Gaps = 108/509 (21%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G Y KK KL+ E+ + S + IF+GV VNGYT+ PS +L
Sbjct: 76 GDYFRRKKIKLQNLDSEIRSASPNNPPIFKGVVAHVNGYTQ-----------PSLNDLHR 124
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHK 1435
+++ HGG + Y +T THII S L K ++ + +++KP WIVDSI AG++L +
Sbjct: 125 MIVSHGGGFLQYLDRKTAATHIITSALTPKKKEEFR-RYRVVKPAWIVDSIKAGRMLPWE 183
Query: 1436 KY-LLYTGTDAKPL----------TKLLQKSYFENTEA------------PCCSKSLVET 1472
Y LL GT K L +SY T+A P S+ +VE
Sbjct: 184 TYRLLGEGTAQKVLKFDANGISTENNTQSQSYKAQTDACWYTSQLNKEVVPVDSQRIVEL 243
Query: 1473 SSHTSTVSDSVDNTEESKSEAVNSEESKSEAANPIES---------KQTVKTKESKLETV 1523
S +T +++ + +A + S A+ E V + L+ V
Sbjct: 244 PSADTTDDPPLEDEPATDVQATDQVNGVSMASTTPEEFGALGSDDLLSPVHPERPSLDQV 303
Query: 1524 NIS----APKPQASSTKNA-------------SNEDFLGEFYNKSRLHHLSTMGSMFKQY 1566
+ S KP S NA N DF+ ++Y +SRLHHLST + K
Sbjct: 304 HTSPKADGRKPLTSEEHNALLLSKAHIRQSSVINPDFIQQYYRESRLHHLSTWKAELKAQ 363
Query: 1567 VNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFV 1626
+ L ++ RG + K G I+H+D D FF
Sbjct: 364 LQTLAQE-----RGTAKLSPIKRLPGTRR-------------------YILHVDFDSFFA 399
Query: 1627 SVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNG 1686
+V ++ HPEL D P+AVAHG G S++ R++G+ NG
Sbjct: 400 AVSLQKHPELADSPIAVAHGTGPGSEIAS------------------CNYPARKFGVKNG 441
Query: 1687 MFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDI 1746
M++ AL++CP LK++PYDF Y++ S Y I + +++VS+ +E+ ++ I
Sbjct: 442 MWMKGALERCPELKVLPYDFPAYEDASRKFYQAILDIDGIVQSVSI--DEALVDISSLCI 499
Query: 1747 RQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
+ D + +S + REQ + +AQ +
Sbjct: 500 QAGGSDGKAISESSIYREQEKADTIAQKL 528
>gi|125656404|gb|ABN48550.1| polymerase ATREV1-630 [Arabidopsis thaliana]
Length = 630
Score = 186 bits (471), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 160/532 (30%), Positives = 237/532 (44%), Gaps = 118/532 (22%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGG------IFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
G YME K RKL+ QFE EA++ SRG IFQGV+IFV+G+T +PS
Sbjct: 55 GSYMEVKNRKLQNQFETEASAASRGVSGSEKLIFQGVSIFVDGFT-----------IPSH 103
Query: 1373 EELKALMMLHGGIYHHYESSRT-THIIASNLPHTKIKKLKP---GDKIIKPEWIVDSISA 1428
+ELK MM +GG + +Y S R+ THII SNLP +K+K L+ G ++KP WIVDSISA
Sbjct: 104 QELKGYMMKYGGRFENYFSRRSVTHIICSNLPDSKVKNLRTFSRGLPVVKPTWIVDSISA 163
Query: 1429 GKLLDHKKYLLYTGTD-------------------AKPLTKLLQKSYFENTEAPCCSKS- 1468
+LL Y L D A P+T + + E ++
Sbjct: 164 NRLLGWVPYQLDQLNDTQPKLSAFFAPRSHLTPQMASPVTSFQPDTGYSEAEEGSSIRAD 223
Query: 1469 -LVETSSHTSTVSDSV--DNTEESKSEAVNSEESKSEAANP-------IESKQTVKTKES 1518
E H D V +NT +E + + KS N IE K+ +S
Sbjct: 224 DSEEARDHIDDEIDGVYIENTTPELTEQTGTGDLKSSEMNAEGLGNYDIEEKEVSSELQS 283
Query: 1519 KLETVNIS----------------APKPQASSTKNASNED--FLGEFYNKSRLHHLSTMG 1560
+ S A +S+ ++++ ED F+ ++ SRLH + T
Sbjct: 284 TTNLHSTSDNKSVHANGKNGGKSIATAAGSSTRRHSTLEDPNFVENYFKNSRLHFIGT-- 341
Query: 1561 SMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHID 1620
+ N R++ G G+ KW S N + + I+HID
Sbjct: 342 -----WRNRYRKRFHGSSNGL----KWADS-------------GQNTAEMAKKSTIIHID 379
Query: 1621 MDCFFVSVGIRHHPELQDEPVAVAHG---KGNSSKVREGVDRQAEFDIYRQRTMNRMGLN 1677
+DCFFVSV I++ EL D+PVAV H KG + ++
Sbjct: 380 LDCFFVSVVIKNRLELHDKPVAVCHSDNPKGTAE-------------------ISSANYP 420
Query: 1678 TREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNES 1737
R YG+ GMFV HA CP L IVPY+FE Y+EV+ Y+++ ++A+S +E+
Sbjct: 421 ARAYGVKAGMFVRHAKDLCPQLVIVPYNFEAYEEVADQFYDILHRHCRKVQALS--CDEA 478
Query: 1738 FLNALP-EDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPS 1788
FL+ D+ EVL R + + + + + + ++ A T V P+
Sbjct: 479 FLDVSDLSDVETEVLASTIRNEILETTGCSASAGIGGTMLMARLATRVAKPA 530
Score = 104 bits (260), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 90/165 (54%), Gaps = 7/165 (4%)
Query: 1875 EAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIA 1934
EAY+E+ + H+ + V A+SCDE ++D S L + AS +R I
Sbjct: 450 EAYEEVADQFYDIL-HR---HCRKVQALSCDEAFLDVSDLSD---VETEVLASTIRNEIL 502
Query: 1935 KETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFK 1994
+ TGC+ S G G L ARLAT+ AKP GQ +++ + + +F+ +P+ LPGVG L K
Sbjct: 503 ETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFLDQLPVGTLPGVGSVLKEK 562
Query: 1995 LNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELT 2039
L QTCG L+ IS LQ + G K G L+ + RG D + +T
Sbjct: 563 LVKQNIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDLRSVT 607
>gi|79529581|ref|NP_199288.4| DNA repair protein REV1 [Arabidopsis thaliana]
gi|59796995|dbj|BAD89586.1| deoxycytidyl transferase [Arabidopsis thaliana]
gi|332007773|gb|AED95156.1| DNA repair protein REV1 [Arabidopsis thaliana]
Length = 1101
Score = 186 bits (471), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 160/532 (30%), Positives = 237/532 (44%), Gaps = 118/532 (22%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGG------IFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
G YME K RKL+ QFE EA++ SRG IFQGV+IFV+G+T +PS
Sbjct: 55 GSYMEVKNRKLQNQFETEASAASRGVSGSEKLIFQGVSIFVDGFT-----------IPSH 103
Query: 1373 EELKALMMLHGGIYHHYESSRT-THIIASNLPHTKIKKLKP---GDKIIKPEWIVDSISA 1428
+ELK MM +GG + +Y S R+ THII SNLP +K+K L+ G ++KP WIVDSISA
Sbjct: 104 QELKGYMMKYGGRFENYFSRRSVTHIICSNLPDSKVKNLRTFSRGLPVVKPTWIVDSISA 163
Query: 1429 GKLLDHKKYLLYTGTD-------------------AKPLTKLLQKSYFENTEAPCCSKS- 1468
+LL Y L D A P+T + + E ++
Sbjct: 164 NRLLGWVPYQLDQLNDTQPKLSAFFAPRSHLTPQMASPVTSFQPDTGYSEAEEGSSIRAD 223
Query: 1469 -LVETSSHTSTVSDSV--DNTEESKSEAVNSEESKSEAANP-------IESKQTVKTKES 1518
E H D V +NT +E + + KS N IE K+ +S
Sbjct: 224 DSEEARDHIDDEIDGVYIENTTPELTEQTGTGDLKSSEMNAEGLGNYDIEEKEVSSELQS 283
Query: 1519 KLETVNIS----------------APKPQASSTKNASNED--FLGEFYNKSRLHHLSTMG 1560
+ S A +S+ ++++ ED F+ ++ SRLH + T
Sbjct: 284 TTNLHSTSDNKSVHANGKNGGKSIATAAGSSTRRHSTLEDPNFVENYFKNSRLHFIGT-- 341
Query: 1561 SMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHID 1620
+ N R++ G G+ KW S N + + I+HID
Sbjct: 342 -----WRNRYRKRFHGSSNGL----KWADS-------------GQNTAEMAKKSTIIHID 379
Query: 1621 MDCFFVSVGIRHHPELQDEPVAVAHG---KGNSSKVREGVDRQAEFDIYRQRTMNRMGLN 1677
+DCFFVSV I++ EL D+PVAV H KG + ++
Sbjct: 380 LDCFFVSVVIKNRLELHDKPVAVCHSDNPKGTAE-------------------ISSANYP 420
Query: 1678 TREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNES 1737
R YG+ GMFV HA CP L IVPY+FE Y+EV+ Y+++ ++A+S +E+
Sbjct: 421 ARAYGVKAGMFVRHAKDLCPQLVIVPYNFEAYEEVADQFYDILHRHCRKVQALS--CDEA 478
Query: 1738 FLNALP-EDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPS 1788
FL+ D+ EVL R + + + + + + ++ A T V P+
Sbjct: 479 FLDVSDLSDVETEVLASTIRNEILETTGCSASAGIGGTMLMARLATRVAKPA 530
Score = 174 bits (440), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 120/379 (31%), Positives = 181/379 (47%), Gaps = 66/379 (17%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
V A+SCDE ++D S L + AS +R I + TGC+ S G G L ARLAT+
Sbjct: 470 VQALSCDEAFLDVSDLSD---VETEVLASTIRNEILETTGCSASAGIGGTMLMARLATRV 526
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKP GQ +++ + + +F+ +P+ LPGVG L KL QTCG L+ IS LQ +
Sbjct: 527 AKPAGQLYISAEKVEEFLDQLPVGTLPGVGSVLKEKLVKQNIQTCGQLRLISKDSLQKDF 586
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL 2078
G K G L+ + RG D + +T + KS+ AEVN+G+RF++ Q+++ FL+ L EV RL
Sbjct: 587 GVKTGEMLWSYSRGLDLRSVTAVQESKSIGAEVNWGVRFRDQQDVQHFLQCLCKEVSLRL 646
Query: 2079 EEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVR 2138
+ +M G+ TLK+ R +A E +K++G G CD +++S ++P +
Sbjct: 647 QGCEMIGRTFTLKIKKRKKDA-EEPTKYMGCGDCDNLSRSITVPAATDDI---------- 695
Query: 2139 SAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQ 2198
E + SK L C +D E+RG+G+Q
Sbjct: 696 --EVLQRISKKLFGSFC-------------------------------LDVKEVRGVGLQ 722
Query: 2199 VSKLEHQ------SKTLATI-------------DTFFTNKGKPPDQLNNPRPGPSNSTIT 2239
VSKL+ S+TL + D F K + N P G +
Sbjct: 723 VSKLDSADPSNKGSRTLKSWLSSAPAVVQIEQDDNVFAAKVRENSDCNRPVTGGVSRLRE 782
Query: 2240 PGPSNSTLPPGPSNSTLPP 2258
S++ G +NS+LPP
Sbjct: 783 SNSEESSIQSGDTNSSLPP 801
>gi|310722198|ref|YP_003969022.1| unnamed protein product [Aeromonas phage phiAS4]
gi|306021041|gb|ADM79576.1| DNA topoisomerase II large subunit [Aeromonas phage phiAS4]
Length = 607
Score = 186 bits (471), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 173/618 (27%), Positives = 282/618 (45%), Gaps = 103/618 (16%)
Query: 43 EHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQR- 101
EH++LRP+ Y+GSV +L + + ++YVPGL KI DEI+ N+ D R
Sbjct: 12 EHVILRPNMYVGSVAYEPHERFLFGK------YQSVSYVPGLVKIIDEIIDNSVDEGIRT 65
Query: 102 DPKM-NCIKITVNQETNTISVWNNGKGIP--VVEHKDEKMFVPTMIFGHLLTSSNYNDEE 158
D K N I I + +++V +NG+GIP +V D +M P + + SN+
Sbjct: 66 DFKFANKIDIRFDLLEGSVTVADNGRGIPQSLVNTPDGEMPKPVAAWTQTMAGSNF---- 121
Query: 159 DKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSF 218
D+ ++V+ G NG G+ L N FS F+ ET C K+F
Sbjct: 122 ----------------------DDTNRVSMGMNGVGSSLTNFFSKTFIGET-CD--GKNF 156
Query: 219 KQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAST 278
V + + + E K G K T + F PD F+ ++D+ +VD+I+ R +
Sbjct: 157 LTVTCSDGASQVNWETKPG-KIKGTSVYFIPDEKHFEGKTIDQQIVDIISDRITALSVVF 215
Query: 279 KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQV 338
+K +NGE +K F +Y K++ D +I EN N + +AI S GF+QV
Sbjct: 216 PKIKFTINGEVASMK-FAEYAKMFGDES--------LILENDN--FSIAICNSPEGFRQV 264
Query: 339 SFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMA 398
S+VN + GG H+D ++D I ++I +K+K K ++ +K ++
Sbjct: 265 SYVNGLNIKNGGSHIDYLIDGIADELIPSIKRKYK----------------IEISKARIK 308
Query: 399 KTLIDIGVRLGGMALK-----------PF-QVKNHI---------WIFINCLIVNPTFDS 437
+ L I V G L+ P +VK+HI I N I+ P ++
Sbjct: 309 ECLTMIVVVRGMSNLRFDSQTKERLTNPLGEVKSHIELDFKKLGKQIMNNDAILMPIIEA 368
Query: 438 QTKENMTLQKGSFGSTCVPKLEDAND----AGTKNSI--DCTLILTEGDSAKSLAVSGLG 491
++ +K + + AG+ I + TL LTEGDSA +S
Sbjct: 369 ALARHLAAEKAALTKAQKAAAKTKVAKHIKAGSWGDISKETTLFLTEGDSAIGYLLS--- 425
Query: 492 VVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYG 551
V + +G + LRGK++N +L+N E+ ++ I+GL + +D++ +Y
Sbjct: 426 VRDSELHGGYALRGKVMNTWGMKGSDVLKNRELADICAIMGLDLANP----DDVENRKYK 481
Query: 552 RLMIMTDQDQDG-SHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLP 610
+ IMTD D DG I ++ F WP L L + TP++ +K ++ FY++
Sbjct: 482 NVAIMTDADPDGQGSIYPCLLAFFSR-WPKLYDLGCVRFVKTPVVILSKGKQTKWFYTIT 540
Query: 611 EFEEWKEETTNWHTYKIK 628
EF+ KE+ W IK
Sbjct: 541 EFDAQKEKYKGWELRYIK 558
>gi|125656402|gb|ABN48549.1| polymerase ATREV1-651 [Arabidopsis thaliana]
Length = 651
Score = 186 bits (471), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 160/532 (30%), Positives = 237/532 (44%), Gaps = 118/532 (22%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGG------IFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
G YME K RKL+ QFE EA++ SRG IFQGV+IFV+G+T +PS
Sbjct: 55 GSYMEVKNRKLQNQFETEASAASRGVSGSEKLIFQGVSIFVDGFT-----------IPSH 103
Query: 1373 EELKALMMLHGGIYHHYESSRT-THIIASNLPHTKIKKLKP---GDKIIKPEWIVDSISA 1428
+ELK MM +GG + +Y S R+ THII SNLP +K+K L+ G ++KP WIVDSISA
Sbjct: 104 QELKGYMMKYGGRFENYFSRRSVTHIICSNLPDSKVKNLRTFSRGLPVVKPTWIVDSISA 163
Query: 1429 GKLLDHKKYLLYTGTD-------------------AKPLTKLLQKSYFENTEAPCCSKS- 1468
+LL Y L D A P+T + + E ++
Sbjct: 164 NRLLGWVPYQLDQLNDTQPKLSAFFAPRSHLTPQMASPVTSFQPDTGYSEAEEGSSIRAD 223
Query: 1469 -LVETSSHTSTVSDSV--DNTEESKSEAVNSEESKSEAANP-------IESKQTVKTKES 1518
E H D V +NT +E + + KS N IE K+ +S
Sbjct: 224 DSEEARDHIDDEIDGVYIENTTPELTEQTGTGDLKSSEMNAEGLGNYDIEEKEVSSELQS 283
Query: 1519 KLETVNIS----------------APKPQASSTKNASNED--FLGEFYNKSRLHHLSTMG 1560
+ S A +S+ ++++ ED F+ ++ SRLH + T
Sbjct: 284 TTNLHSTSDNKSVHANGKNGGKSIATAAGSSTRRHSTLEDPNFVENYFKNSRLHFIGT-- 341
Query: 1561 SMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHID 1620
+ N R++ G G+ KW S N + + I+HID
Sbjct: 342 -----WRNRYRKRFHGSSNGL----KWADS-------------GQNTAEMAKKSTIIHID 379
Query: 1621 MDCFFVSVGIRHHPELQDEPVAVAHG---KGNSSKVREGVDRQAEFDIYRQRTMNRMGLN 1677
+DCFFVSV I++ EL D+PVAV H KG + ++
Sbjct: 380 LDCFFVSVVIKNRLELHDKPVAVCHSDNPKGTAE-------------------ISSANYP 420
Query: 1678 TREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNES 1737
R YG+ GMFV HA CP L IVPY+FE Y+EV+ Y+++ ++A+S +E+
Sbjct: 421 ARAYGVKAGMFVRHAKDLCPQLVIVPYNFEAYEEVADQFYDILHRHCRKVQALS--CDEA 478
Query: 1738 FLNALP-EDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPS 1788
FL+ D+ EVL R + + + + + + ++ A T V P+
Sbjct: 479 FLDVSDLSDVETEVLASTIRNEILETTGCSASAGIGGTMLMARLATRVAKPA 530
Score = 128 bits (321), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 108/189 (57%), Gaps = 7/189 (3%)
Query: 1875 EAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIA 1934
EAY+E+ + H+ + V A+SCDE ++D S L + AS +R I
Sbjct: 450 EAYEEVADQFYDIL-HR---HCRKVQALSCDEAFLDVSDLSD---VETEVLASTIRNEIL 502
Query: 1935 KETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFK 1994
+ TGC+ S G G L ARLAT+ AKP GQ +++ + + +F+ +P+ LPGVG L K
Sbjct: 503 ETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFLDQLPVGTLPGVGSVLKEK 562
Query: 1995 LNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYG 2054
L QTCG L+ IS LQ + G K G L+ + RG D + +T + KS+ AEVN+G
Sbjct: 563 LVKQNIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDLRSVTAVQESKSIGAEVNWG 622
Query: 2055 IRFQNNQEM 2063
+RF++ Q++
Sbjct: 623 VRFRDQQDV 631
>gi|26328987|dbj|BAC28232.1| unnamed protein product [Mus musculus]
Length = 1028
Score = 185 bits (470), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 80/114 (70%), Positives = 98/114 (85%)
Query: 518 ILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHN 577
I+ENAEINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHN
Sbjct: 1 IMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHN 60
Query: 578 WPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
WP+LLR FLEEFITPI+K +K ++E++FYSLPEFEEWK T N +K+KYYK
Sbjct: 61 WPSLLRHRFLEEFITPIVKVSKNKQEIAFYSLPEFEEWKSSTPNHKKWKVKYYK 114
Score = 158 bits (399), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 335 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEEPLPMLPSYKN 394
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V+NGE+AILD +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 395 FKGTIEELASNQYVINGEVAILDSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 449
Score = 61.6 bits (148), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 38/52 (73%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL K+R++K ELN LK+K+P+DLW +DL E
Sbjct: 623 FNYLLDMPLWYLTKEKKDELCKQRNEKEQELNTLKQKSPSDLWKEDLAVFIE 674
>gi|268532610|ref|XP_002631433.1| C. briggsae CBR-REV-1 protein [Caenorhabditis briggsae]
Length = 1023
Score = 185 bits (470), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/230 (41%), Positives = 143/230 (62%), Gaps = 5/230 (2%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLT-PLQFASYLRETIAKETGCTCSTGFGSNKLQARLATK 1957
+ AVSCDEMY++ S L ++ ++ P FA ++R+ I ++T C S G GS L ARLAT+
Sbjct: 543 LRAVSCDEMYINMSSLCEKYGISDPTAFADHIRKVIREKTRCPASVGIGSTSLLARLATR 602
Query: 1958 KAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ--TCGDLQNISLKRLQ 2015
AKP+G F +T + ++FML + DLPG+G+ ++ +L S + TC LQ + + L
Sbjct: 603 HAKPDGVFWVTEEKKTEFMLEEKVRDLPGLGYEMMNRLTSFFGEITTCSQLQQRTERELI 662
Query: 2016 NEVGNKNGLTLYKHCRG--EDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGE 2073
G K ++ CRG ED + H RKSVS ++NYGIRF+ +E+ + + E
Sbjct: 663 PVFGPKLATKVFNQCRGTEEDPENFWKTHVRKSVSCDINYGIRFKKKEEVLQLMTAIGAE 722
Query: 2074 VEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPI 2123
+E++L + KM ITLKLMVRSA+AP + SKF+GHG CD TK+ ++ +
Sbjct: 723 LERKLLDCKMSAGSITLKLMVRSADAPVQTSKFMGHGRCDTFTKTCNISV 772
Score = 108 bits (270), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 101/212 (47%), Gaps = 41/212 (19%)
Query: 1537 NASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGI------EAIRKWKTS 1590
+A N +F+ ++Y +SRLH +ST+ K +V L+ + + E RK T
Sbjct: 379 DARNPNFIRDYYARSRLHLISTLAQDMKDFVANLKLEGKLTAKCFLENELAEMGRKLGTG 438
Query: 1591 LGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS 1650
GI + + H+D+DCFFVSV +R +L+D+ VA+ H KG
Sbjct: 439 TGIQTN------------------TVFHVDLDCFFVSVAVRDRVDLRDKEVAITHSKGTI 480
Query: 1651 SKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYK 1710
S V R G+ NGM V AL+KCP L ++PY F+ Y
Sbjct: 481 SNSMSEV--------------ASCSYAARSCGVKNGMLVRDALQKCPQLTLLPYQFDDYI 526
Query: 1711 EVSYCLYNLIASLTLNIEAVS---LYTNESFL 1739
+VS +Y ++AS TL++ AVS +Y N S L
Sbjct: 527 QVSRQIYEILASYTLDLRAVSCDEMYINMSSL 558
Score = 79.3 bits (194), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 69/123 (56%), Gaps = 14/123 (11%)
Query: 1321 YMEAKKRKLEEQFELEANS--DSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKAL 1378
YM K KL Q E + + +G ++FVNGYT+ P A ++ L
Sbjct: 233 YMRMKITKLNHQVNSEKSKPYEKVSETLKGYSVFVNGYTE-----------PPALVIRDL 281
Query: 1379 MMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY 1437
MM HGG YH +Y+ TT+ IAS++ K+ +++ + I+ +WI +SI+AGK LD++ +
Sbjct: 282 MMAHGGEYHCYYQHGITTYTIASSIATAKVNRIREKEIFIRADWITESIAAGKPLDYRDF 341
Query: 1438 LLY 1440
L+Y
Sbjct: 342 LIY 344
>gi|302509416|ref|XP_003016668.1| hypothetical protein ARB_04960 [Arthroderma benhamiae CBS 112371]
gi|291180238|gb|EFE36023.1| hypothetical protein ARB_04960 [Arthroderma benhamiae CBS 112371]
Length = 1150
Score = 185 bits (470), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 114/321 (35%), Positives = 168/321 (52%), Gaps = 59/321 (18%)
Query: 1898 IVSAVSCDEMYVDCSQL-----------LQELSLTPLQ-----FASYLRETIAKETGCTC 1941
IV +VS DE VD S L + E S+ Q A LR++I ++TGC
Sbjct: 440 IVQSVSIDEALVDISSLCIQAGGSDGRAISESSIYREQEKADTIAEKLRDSIKQKTGCHV 499
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N LQARLA KKAKP GQF L P+ + DF+ ++DLPGV HSL KL L +
Sbjct: 500 SVGIGQNILQARLALKKAKPAGQFQLKPENMLDFIGEFSVTDLPGVAHSLGTKLEELSVK 559
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ +S ++L +G K G L+++ RG D+ + + RKSVSAE+N+GIRF N
Sbjct: 560 YVKDIRQLSREKLTGHLGPKTGAKLWEYARGIDNTVVGEQVIRKSVSAEINWGIRFTNQA 619
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ + F++ L+ E+ +RL E +KG+ +T+++M R+A++P + K LGHG CD KS
Sbjct: 620 QADEFVRSLSEELHRRLLENGVKGRQLTMRIMRRAADSPVDPPKHLGHGKCDTFNKS--- 676
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
II + P AS +G KE + +
Sbjct: 677 -------IILH---------TPTNASDIIG------------------------KEAVSV 696
Query: 2182 VNKLKVDPVELRGIGIQVSKL 2202
+ P +LRG+G+Q++KL
Sbjct: 697 LRSFNFSPGDLRGLGVQMTKL 717
Score = 156 bits (394), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 139/509 (27%), Positives = 222/509 (43%), Gaps = 108/509 (21%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G Y KK KL+ E+ + S + IF+GV VNGYT+ PS +L
Sbjct: 35 GDYFRRKKIKLQNLDSEIRSASPNNPPIFKGVVAHVNGYTQ-----------PSLNDLHR 83
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHK 1435
+++ HGG + Y +T THII S L K ++ + +++KP WIVDSI AG++L +
Sbjct: 84 MIVSHGGGFLQYLDGKTAATHIITSALTPKKREEFR-RYRVVKPAWIVDSIKAGRMLPWE 142
Query: 1436 KY-LLYTGTDAKPL----------TKLLQKSYFENTEA------------PCCSKSLVET 1472
Y LL GT K L +SY T+A P S+S+ +
Sbjct: 143 TYRLLGEGTAQKVLKFDANGISTQNNTQSQSYKAQTDACWYTSQLNKEVVPIDSQSIAKC 202
Query: 1473 SSHTSTVSDSVDNTEESKSEAVNSEESKSEAANPIESKQTVKTKE---------SKLETV 1523
S +T +++ + +A + S A+ E + + + LE V
Sbjct: 203 PSADTTEDPPLEDEPATDVQATDQANGVSMASATPEEFGALGSDDLLSPGHPERPSLEQV 262
Query: 1524 NIS----APKPQASSTKNA-------------SNEDFLGEFYNKSRLHHLSTMGSMFKQY 1566
+ S KP S NA N DF+ ++Y +SRLHHLST + K
Sbjct: 263 HTSPKADGRKPLTSEEHNALLLSKAHIRQSSVINPDFIQQYYRESRLHHLSTWKAELKAQ 322
Query: 1567 VNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFV 1626
+ L ++ RG + K G I+H+D D FF
Sbjct: 323 LQTLAQE-----RGTAKLSPIKRLPGTRR-------------------YILHVDFDSFFA 358
Query: 1627 SVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNG 1686
+V ++ HPEL D P+AVAHG G S++ R++G+ NG
Sbjct: 359 AVSLQKHPELADSPIAVAHGTGPGSEIAS------------------CNYPARKFGVKNG 400
Query: 1687 MFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDI 1746
M++ AL++CP LK++PYDF Y++ S Y I + +++VS+ +E+ ++ I
Sbjct: 401 MWMKGALERCPELKVLPYDFPAYEDASRKFYEAILDIDGIVQSVSI--DEALVDISSLCI 458
Query: 1747 RQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
+ D + +S + REQ + +A+ +
Sbjct: 459 QAGGSDGRAISESSIYREQEKADTIAEKL 487
>gi|326469529|gb|EGD93538.1| DNA damage repair protein Mus42 [Trichophyton tonsurans CBS 112818]
Length = 1153
Score = 185 bits (469), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 115/321 (35%), Positives = 168/321 (52%), Gaps = 59/321 (18%)
Query: 1898 IVSAVSCDEMYVDCS-----------QLLQELSLTPLQ-----FASYLRETIAKETGCTC 1941
IV +VS DE VD S + + E S+ Q A LR++I ++TGC
Sbjct: 443 IVQSVSIDEALVDISSSCIQAGGSDGRAISESSIYREQEKADTIAQKLRDSIKQKTGCHV 502
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N LQARLA KKAKP GQF L P+ I DF+ ++DLPGV HSL KL L +
Sbjct: 503 SVGIGQNILQARLALKKAKPAGQFQLKPENILDFIGEFTVTDLPGVAHSLGAKLEELRVK 562
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ +S ++L +G K G L+++ RG D+ + + RKSVSAE+N+GIRF +
Sbjct: 563 YVKDIRQLSREKLTGHLGPKTGAKLWEYARGIDNTVVGEQVIRKSVSAEINWGIRFTSQA 622
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ + F++ L+ E+ +RL E +KG+ +T+++M R+A++P + K LGHG CD KS
Sbjct: 623 QADEFVRSLSEELHRRLLENGVKGRQLTMRIMRRAADSPVDPPKHLGHGKCDTFNKS--- 679
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
II + P AS +G KE + I
Sbjct: 680 -------IILH---------TPTNASDIIG------------------------KEAVSI 699
Query: 2182 VNKLKVDPVELRGIGIQVSKL 2202
+ P +LRG+GIQ++KL
Sbjct: 700 IRSFNFSPGDLRGLGIQMTKL 720
Score = 160 bits (405), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 144/509 (28%), Positives = 223/509 (43%), Gaps = 108/509 (21%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G Y KK KL+ E+ + S + IF+GV VNGYT+ PS +L
Sbjct: 38 GDYFRRKKIKLQNLDAEIRSASPNNPPIFKGVVAHVNGYTQ-----------PSLNDLHR 86
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHK 1435
+++ HGG + Y +T THIIAS L K ++ + +++KP WIVDSI AG++L +
Sbjct: 87 MIVSHGGGFLQYLDGKTAATHIIASALTPKKKEEFR-RYRVVKPAWIVDSIKAGRMLPWE 145
Query: 1436 KY-LLYTGTDAKPL----------TKLLQKSYFENTEA------------PCCSKSLVET 1472
Y LL GT K L +SY T++ P S+S+V+
Sbjct: 146 TYRLLDEGTAQKVLKFDANGISTENNTQSQSYKAQTDSCWYTSQLNKEVSPVESQSIVKC 205
Query: 1473 SSHTSTVSDSVDNTEESKSEAVNSEESKSEA-ANPIESK--------QTVKTKESKLETV 1523
S T +++ +A + + A A P E V + S LE V
Sbjct: 206 PSADITEDPHLEDEPAIDVQATDQVNGVAMAPATPEEFGALGSDDLLSPVHPERSSLEQV 265
Query: 1524 NIS----APKPQASSTKNA-------------SNEDFLGEFYNKSRLHHLSTMGSMFKQY 1566
+ S KP S NA N DF+ ++Y +SRLHHLST + K
Sbjct: 266 HTSPKADGRKPLTSEEHNALLLSKAHIRQSSVVNPDFIQQYYRESRLHHLSTWKAELKAK 325
Query: 1567 VNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFV 1626
+ L ++ RG + K G I+H+D D FF
Sbjct: 326 LQSLAQE-----RGTAKLSPIKRPPGTRR-------------------YILHVDFDSFFA 361
Query: 1627 SVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNG 1686
+V ++ HPEL D P+AVAHG G S++ R++G+ NG
Sbjct: 362 AVSLQKHPELADYPIAVAHGTGPGSEIAS------------------CNYPARKFGVKNG 403
Query: 1687 MFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDI 1746
M++ AL++CP LK++PYDF Y++ S Y I + +++VS+ +E+ ++ I
Sbjct: 404 MWMKGALERCPELKVLPYDFPAYEDASRKFYEAILDIDGIVQSVSI--DEALVDISSSCI 461
Query: 1747 RQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
+ D + +S + REQ + +AQ +
Sbjct: 462 QAGGSDGRAISESSIYREQEKADTIAQKL 490
>gi|321454506|gb|EFX65673.1| hypothetical protein DAPPUDRAFT_332921 [Daphnia pulex]
Length = 227
Score = 184 bits (468), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 134/203 (66%), Gaps = 1/203 (0%)
Query: 168 MIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMS 227
MIF LL N+ D E+ VTGG N YGAKL NIFS+ F +ET+ + FKQ W DNM+
Sbjct: 1 MIFDPLLPDFNFYDGEETVTGGLNYYGAKLGNIFSTAFELETASKDLCLRFKQTWTDNMT 60
Query: 228 KVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNG 287
+P ++ S ++TK TF+PDL KF+M SL+KD + L++RRA++ A ST V V+LN
Sbjct: 61 LAETPVVEPYSGPNYTKNTFSPDLDKFRMDSLNKDTIALLSRRAFEVATSTPGVNVYLND 120
Query: 288 EKLPVKNFQDYVKL-YTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIAT 346
+ LP+ NF++Y+ L + D G +K ++E VN RW++A+A S+ G QQ+S N T
Sbjct: 121 KPLPINNFKEYLDLCLKGKVDCLGAQLKCVFEAVNERWDIAVAVSEHGLQQISLANKCCT 180
Query: 347 TKGGRHVDAVVDAIVKQIIEVVK 369
TKGGRHVD + + +K+ ++ ++
Sbjct: 181 TKGGRHVDYITEREIKKDVKAMR 203
>gi|321453499|gb|EFX64728.1| hypothetical protein DAPPUDRAFT_333905 [Daphnia pulex]
Length = 193
Score = 184 bits (468), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 91/192 (47%), Positives = 128/192 (66%), Gaps = 1/192 (0%)
Query: 168 MIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMS 227
MIF LL N+ D E+ VTGG N YGAKL NIFS+ F +ET+ + FKQ W DNM+
Sbjct: 1 MIFDPLLPDFNFYDGEETVTGGLNYYGAKLGNIFSTAFELETASKDLCLRFKQTWTDNMT 60
Query: 228 KVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNG 287
+P ++ S ++TK TF+PDL KF+M SL+KD + L++RRA++ A ST V V+LN
Sbjct: 61 LAETPVVEPYSGPNYTKNTFSPDLDKFRMDSLNKDTIALLSRRAFEVATSTPGVNVYLND 120
Query: 288 EKLPVKNFQDYVKL-YTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIAT 346
+ LP+ NF++Y+ L + D G +K ++E VN RW++A+A S+ GFQQ+S N T
Sbjct: 121 KPLPINNFKEYLDLCLKGKVDCLGAQLKCVFEAVNERWDIAVAVSEHGFQQISLANKCCT 180
Query: 347 TKGGRHVDAVVD 358
TKGGRHVD + +
Sbjct: 181 TKGGRHVDYITE 192
>gi|401824853|gb|AFQ22543.1| hypothetical protein [Stenotrophomonas phage IME13]
Length = 607
Score = 184 bits (468), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 171/628 (27%), Positives = 283/628 (45%), Gaps = 123/628 (19%)
Query: 43 EHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQR- 101
EH++LRP+ Y+GSV +L + + ++YVPGL KI DEI+ N+ D R
Sbjct: 12 EHVILRPNMYVGSVAYEPHERFLFGK------YQSVSYVPGLVKIIDEIIDNSVDEGIRT 65
Query: 102 DPKM-NCIKITVNQETNTISVWNNGKGIP--VVEHKDEKMFVPTMIFGHLLTSSNYNDEE 158
D K N I I + +++V +NG+GIP +V D +M P + + SN++D +
Sbjct: 66 DFKFANKIDIRFDLLEGSVTVVDNGRGIPQSLVNTPDGEMPKPVAAWTQTMAGSNFDDTK 125
Query: 159 DKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSF 218
+V+ G NG G+ L N FS F+ ET C K+F
Sbjct: 126 --------------------------RVSMGMNGVGSSLTNFFSKTFIGET-CD--GKNF 156
Query: 219 KQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAST 278
V + + + E K G K T + F PD F+ ++D+ +VD+I+ R +
Sbjct: 157 LTVTCSDGASQVNWETKPG-KIKGTSVYFIPDEKHFEGKTIDQQIVDIISDRITALSVVF 215
Query: 279 KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQV 338
+K +NGE +K F +Y K++ D +I EN N + +AI S GF+QV
Sbjct: 216 PKIKFTINGEVASMK-FAEYAKMFGDES--------LILENDN--FSIAICNSPEGFRQV 264
Query: 339 SFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNK-DLG------CTIIMLFGNKFNNVK 391
S+VN + GG H+D ++D I ++I +K+K+K ++ C +++ +N++
Sbjct: 265 SYVNGLNIKNGGSHIDYLIDGISDELIPSIKRKHKIEISKARIKECLTMIVIVRGMSNLR 324
Query: 392 NNKLQMAKTLIDIGVRLGGMALKPFQVKNHI---------WIFINCLIVNPTFDSQTKEN 442
+ + +G +VK+HI I N I+ P ++ +
Sbjct: 325 FDSQTKERLTNPLG-----------EVKSHIELDFKKLGKQIMNNDAILMPIIEAALARH 373
Query: 443 MT---------------------LQKGSFGSTCVPKLEDANDAGTKNSIDCTLILTEGDS 481
+ ++ GS+G T TK + TL LTEGDS
Sbjct: 374 LAAEKAALTKAQKAAAKTKVAKHIKAGSWGDT------------TKET---TLFLTEGDS 418
Query: 482 AKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTT 541
A +S V D +G + LRGK++N +L+N E+ ++ I+GL +
Sbjct: 419 AIGYLLS---VRDSDLHGGYALRGKVMNTWGMKGSDVLKNRELADICAIMGLDLANP--- 472
Query: 542 VEDMKTLRYGRLMIMTDQDQDG-SHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKA 600
+D++ +Y + IMTD D DG I ++ F WP L + TP++ +K
Sbjct: 473 -DDVENRKYKNVAIMTDADPDGQGSIYPCLLAFFSR-WPELYNQGCVRFVKTPVVILSKG 530
Query: 601 REELSFYSLPEFEEWKEETTNWHTYKIK 628
++ FY++ EF+ KE+ W IK
Sbjct: 531 KQTKWFYTITEFDAQKEKYKGWELRYIK 558
>gi|393216198|gb|EJD01689.1| DNA/RNA polymerase [Fomitiporia mediterranea MF3/22]
Length = 890
Score = 184 bits (468), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 165/323 (51%), Gaps = 47/323 (14%)
Query: 1894 SESKIVSAVSCDEMYVDCSQLLQELSLT-------PLQFASYLRETIAKETGCTCSTGFG 1946
S S + AVS DE +D + ++++ + +FA LR I TGC S G
Sbjct: 386 SHSDDLQAVSVDEALIDVTTAVKQMPPSTKKRYDPAKEFAEMLRAEIKASTGCDVSIGIS 445
Query: 1947 SNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFK-LNSLGAQTCGD 2005
N + ARLAT+KAKP G HL + + + N + +L G G + K L LG T G+
Sbjct: 446 HNIMLARLATRKAKPAGSHHLRLEDLQKHIENTCVDELHGFGRAARDKALERLGVATLGE 505
Query: 2006 LQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMET 2065
L L + G G TLY CRG D + + + RKSVSAE+NYGIRF+NN++ +
Sbjct: 506 LAKKPRSVLCDVFGKTLGSTLYDACRGIDHRRIESDKPRKSVSAEINYGIRFENNEQAQA 565
Query: 2066 FLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYE 2125
F+ QLA EV +RL+ V M+G+ +TLK+M R +AP EA KFLGHG C+ K +SL
Sbjct: 566 FMFQLAEEVARRLDAVDMRGRSLTLKVMKRDPDAPVEAPKFLGHGCCNIFNKQASL---- 621
Query: 2126 RPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKL 2185
S+E R S L G QA ++LK F
Sbjct: 622 -------------SSEDGRATSDALIIG---------------QQAWRLLKGFAF----- 648
Query: 2186 KVDPVELRGIGIQVSKLEHQSKT 2208
DP +LRG+GIQ+ KLE S++
Sbjct: 649 --DPRDLRGVGIQIQKLEKASES 669
Score = 102 bits (254), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 105/228 (46%), Gaps = 44/228 (19%)
Query: 1537 NASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGI--------------- 1581
+A+ DF+ FY SRLH+LST + V E +E+ D F
Sbjct: 181 SAAGADFIDSFYKNSRLHYLSTWKVELRALVAEAQERADKAFAQGAGGAGDADGGAESSK 240
Query: 1582 EAIRKWKTSLGITEDEDLEETFSDNP-----SPSEP------------EPVIMHIDMDCF 1624
+ + K +G + ED + N SPS+ VIMH D DCF
Sbjct: 241 DGLVKEDGLVGKVKAEDTSTSMRGNAFQLLRSPSKKIKAKEQDAVGSENTVIMHCDFDCF 300
Query: 1625 FVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLG 1684
F SVG+ P L+D+PV V H +G R G +E ++ RE G+
Sbjct: 301 FASVGLLTRPHLKDQPVVVCHSQG----ARGGESSTSE--------VSSANYKARESGIR 348
Query: 1685 NGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSL 1732
+GM + A K CP++ +PY+FE YK+ S LY ++ S + +++AVS+
Sbjct: 349 SGMSLHQARKLCPSVVTIPYEFEKYKKASLHLYTILMSHSDDLQAVSV 396
>gi|315050436|ref|XP_003174592.1| DNA repair protein REV1 [Arthroderma gypseum CBS 118893]
gi|311339907|gb|EFQ99109.1| DNA repair protein REV1 [Arthroderma gypseum CBS 118893]
Length = 1154
Score = 184 bits (466), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 112/321 (34%), Positives = 165/321 (51%), Gaps = 59/321 (18%)
Query: 1898 IVSAVSCDEMYVDCSQL-----------LQELSLTPLQ-----FASYLRETIAKETGCTC 1941
IV +VS DE VD S + + E S Q A LR++I ++TGC
Sbjct: 444 IVQSVSIDEALVDISAICIQAGGSDGRAMSEASTYREQEKADTVAQNLRDSIKQKTGCHV 503
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N LQA+LA KKAKP GQF L P+ + DF+ ++DLPGV HSL KL L +
Sbjct: 504 SVGIGQNILQAKLALKKAKPAGQFQLKPENVLDFIGEFTVTDLPGVAHSLGAKLQELSVK 563
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ +S +RL +G K G L+++ RG D+ + + RKSVSAE+N+GIRF N
Sbjct: 564 YVKDIRQLSRERLTGHLGPKTGAKLWEYARGIDNTVVGDQVIRKSVSAEINWGIRFVNQT 623
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ + F++ L E+ +RL E +KG+ +T+++M ++A++P + K LGHG CD KS +L
Sbjct: 624 QADEFVQSLCEELHRRLLENGVKGRQLTMRIMRKAADSPADPPKHLGHGKCDTFNKSVAL 683
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
P AS +G KE + I
Sbjct: 684 -------------------HTPTNASDIIG------------------------KEAVSI 700
Query: 2182 VNKLKVDPVELRGIGIQVSKL 2202
+ P +LRG+G+Q++KL
Sbjct: 701 LRSFNFSPGDLRGLGVQMTKL 721
Score = 149 bits (377), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 136/510 (26%), Positives = 224/510 (43%), Gaps = 109/510 (21%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G Y KK KL+ E+ ++S + IF+GV +NGYT+ PS +L
Sbjct: 38 GDYFRRKKIKLQNLDAEIRSSSPNNPPIFEGVVAHINGYTQ-----------PSLNDLHR 86
Query: 1378 LMMLHGGIYHHYESSRTT--HIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHK 1435
+++ HGG + Y +TT HIIAS L K ++ + +++KP WIVDSI AG++L +
Sbjct: 87 MIVSHGGGFLQYLDGKTTATHIIASALTPRKKEEFR-RYRVVKPAWIVDSIEAGRMLPWE 145
Query: 1436 KY-LLYTGTDAKPL-----------TKLLQKSYFE-----------NTEAPCCSKSLVET 1472
Y LL GT K L +SY N E P S+ V +
Sbjct: 146 SYRLLDEGTTQKVLKFDISGRISAENNTQSQSYRTQTDSSWYTSQLNKEPPFGSRKTVGS 205
Query: 1473 SSHTSTVSD-SVDNTEESKSEAVNSEE-------SKSEAANP-----IESKQTVKTKESK 1519
SS + D V++ + +A+ ++ + EA P S Q+ +T +
Sbjct: 206 SSTANITEDPPVEDELVTDVQAMTQDDCGAASPTAPGEAGTPGSDYLFPSTQSEQTTSEQ 265
Query: 1520 LETVNISAPKPQASSTKNAS--------------NEDFLGEFYNKSRLHHLSTMGSMFKQ 1565
L K Q +S ++ + N DF+ ++Y +SRLHHLST K
Sbjct: 266 LNKSPECDRKKQLTSEEHNALLLSKAHIRQSSVVNPDFIQQYYRESRLHHLSTWKVELKA 325
Query: 1566 YVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFF 1625
+ + ++ RG + K G I+H+D D FF
Sbjct: 326 QLQTIAQE-----RGTAKLTSVKRPPGTRR-------------------YILHVDFDSFF 361
Query: 1626 VSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGN 1685
+V ++ HPEL ++PVA+AHG G S++ R++G+ N
Sbjct: 362 AAVSLQKHPELAEKPVAIAHGTGPGSEIAS------------------CNYPARKFGVKN 403
Query: 1686 GMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPED 1745
GM++ AL+ CP LK++ YDF Y++ S Y I + +++VS+ +E+ ++
Sbjct: 404 GMWMKGALELCPELKVLSYDFPAYEDASRKFYEAILDIDGIVQSVSI--DEALVDISAIC 461
Query: 1746 IRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
I+ D + ++ REQ + +AQ++
Sbjct: 462 IQAGGSDGRAMSEASTYREQEKADTVAQNL 491
>gi|169866587|ref|XP_001839880.1| REV1 [Coprinopsis cinerea okayama7#130]
gi|116498964|gb|EAU81859.1| REV1 [Coprinopsis cinerea okayama7#130]
Length = 1162
Score = 184 bits (466), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 111/320 (34%), Positives = 161/320 (50%), Gaps = 50/320 (15%)
Query: 1894 SESKIVSAVSCDEMYVDCSQLLQELSL--------TPLQFASYLRETIAKETGCTCSTGF 1945
S + + AVS DE +D ++ + +L +A +R + T C S G
Sbjct: 487 SHADDLQAVSVDEAIIDVTEAVSQLRARTEDPTIDVAKDYAETIRAAVRNVTSCEISIGI 546
Query: 1946 GSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNS-LGAQTCG 2004
N L ARLAT+KAKP G +HL P+ + ++ + ++DL G G K LGA + G
Sbjct: 547 AHNILLARLATRKAKPGGSYHLRPEEVPQYLAPLEITDLHGFGWQTKKKAQEKLGATSLG 606
Query: 2005 DLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEME 2064
+L S +L + +G G LY RG DD++L + RKSVS E+NYGIRF+NN++ E
Sbjct: 607 ELTKKSKAQLIDALGRATGENLYNALRGVDDRKLESDKPRKSVSCEINYGIRFENNEQAE 666
Query: 2065 TFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIY 2124
F++Q+A EV+KRL+ V M G+ +TLK+M R AP E +KFLGHG CD +K +L
Sbjct: 667 EFIRQMAAEVKKRLDAVNMVGRSVTLKIMKRDPSAPAEPAKFLGHGPCDVFSKQGAL--- 723
Query: 2125 ERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKE-VLFIVN 2183
+G G + QI+ + V ++
Sbjct: 724 -------------------------IGPG------------GRATSDDQIIGDHVWRMLK 746
Query: 2184 KLKVDPVELRGIGIQVSKLE 2203
DP +LRGIGIQ+ KLE
Sbjct: 747 SFNFDPKDLRGIGIQIQKLE 766
Score = 165 bits (417), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 122/446 (27%), Positives = 199/446 (44%), Gaps = 83/446 (18%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKAL 1378
G YM K+ KL+ Q + + + GIF+G+AI++NG+T+ PS ++L+ L
Sbjct: 103 GQYMHRKRAKLQIQNDSLKGKEVKDGIFKGLAIYINGWTQ-----------PSVQDLRQL 151
Query: 1379 MMLHGGIYHHY--ESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKK 1436
++ HGG++ Y + S THII +L K+++ K K+++PEW+V+S AG LL +
Sbjct: 152 IIQHGGVFQPYLDKKSIVTHIITCSLTPAKMREFK-HMKVVRPEWLVESAKAGGLLPWRD 210
Query: 1437 YLLYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSEAVNS 1496
++ D +P + S A + + S ST + T + V
Sbjct: 211 FIYIP--DGRP-----ESSQGSKQRAQGLGDHVKLSGSSGSTTKAAKAPTPKPDPLYVTD 263
Query: 1497 EESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHL 1556
+SK EAA + ++ N P+ + DF+ +Y SRLHHL
Sbjct: 264 PKSKEEAARVPGYASAISNPNAQRAMAN-----PEWRKAHTSVAPDFIEGYYRNSRLHHL 318
Query: 1557 STMGSMFKQYVNELREKHD----------------------GV-FRGIEAI-------RK 1586
+T + ++ V E +E+ + GV RG+E + K
Sbjct: 319 ATWKAELRELVQEAQERAESNGGAIAEGAVAHLGKVPSERGGVSMRGVEFVMKSPGSKSK 378
Query: 1587 WKTSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHG 1646
WK E D VIMH D DCFFV+ G+ PEL+ +PV V H
Sbjct: 379 WKGKGRAVEVHDR---------------VIMHCDFDCFFVAAGLVSRPELKGKPVVVCHS 423
Query: 1647 KGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDF 1706
+G+ G +E + R++G+ NGM + A + CP + +PY+F
Sbjct: 424 QGSQG----GASSTSE--------IASCSYEARKFGVKNGMSLQQARQLCPMIITIPYEF 471
Query: 1707 EGYKEVSYCLYNLIASLTLNIEAVSL 1732
E YK+ S Y ++ S +++AVS+
Sbjct: 472 ERYKQFSLQFYTVLMSHADDLQAVSV 497
>gi|312076268|ref|XP_003140785.1| hypothetical protein LOAG_05201 [Loa loa]
gi|307764049|gb|EFO23283.1| hypothetical protein LOAG_05201 [Loa loa]
Length = 729
Score = 184 bits (466), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 79/113 (69%), Positives = 97/113 (85%)
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNW 578
+ENAE+N L+KI+GLQY KY EDMKTLRYG++M+M DQDQDGSHIKGL+INFIH+NW
Sbjct: 1 MENAEVNALLKIIGLQYRLKYDKDEDMKTLRYGKIMVMADQDQDGSHIKGLVINFIHYNW 60
Query: 579 PTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P L+R F+EEFITPI+KATK +EE+SF+SLPE++EW T NW TY+IKYYK
Sbjct: 61 PALVRRNFVEEFITPIVKATKGKEEISFFSLPEYKEWLNNTENWKTYRIKYYK 113
Score = 138 bits (347), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 99/160 (61%), Gaps = 10/160 (6%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMK----- 713
+IEPEWY P+IP VLVNG EGIGT W TK+P +NPREIVDN++ +I G++P
Sbjct: 334 KIEPEWYCPVIPTVLVNGTEGIGTAWSTKVPCYNPREIVDNMRALIDGKEPKTFGKKNSI 393
Query: 714 PWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
PWYK+F+G I+ D RF+ NGE+AI++++ +EITEL + WT YK+ L ++ G +K
Sbjct: 394 PWYKHFRGTIEQLDDQRFICNGEVAIINNETIEITELPIRTWTQTYKEAVLVPMMDGNDK 453
Query: 773 DEVHPGPGRKSHPRPIAPKSYKIDDD----SEEEEIEEVF 808
++ H K+ D S+EE + +VF
Sbjct: 454 QPAVITDFKEYHTDTTVKFVVKMSSDKLRASKEEGLHKVF 493
Score = 50.8 bits (120), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 841 QTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDA 900
Q++E DYDYL+GM L+ E K++LLK+ + K++EL +L++ DLW++DL+
Sbjct: 627 QSKELAAKLSDYDYLVGMAILKLSEEEKDKLLKESETKLSELKLLEEMTWADLWNNDLNC 686
Query: 901 L 901
Sbjct: 687 F 687
>gi|350297325|gb|EGZ78302.1| DNA repair protein [Neurospora tetrasperma FGSC 2509]
Length = 1351
Score = 184 bits (466), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 114/322 (35%), Positives = 168/322 (52%), Gaps = 59/322 (18%)
Query: 1898 IVSAVSCDEMYVDCSQL-LQELSLTPL---------------QFASYLRETIAKETGCTC 1941
+V +VS DE +D + + + E + + Q AS LR+ I ++T C
Sbjct: 460 VVQSVSIDEALIDVTDIVMAEAGSSGIGISEGSIWREQEKVDQMASKLRDRIKEQTDCHV 519
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G+N L A++A +KAKP GQ+ + P+ DF+ + + DLPGV HS+ KL LG +
Sbjct: 520 SVGIGANILLAKVALRKAKPAGQYQIKPEEALDFLGELNVEDLPGVAHSIGAKLEELGIK 579
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ S +RL + +G K G L+++ RG D E+ + RKSVSAEVN+GIRF N +
Sbjct: 580 FVKDIRQTSKERLISALGPKTGEKLWEYSRGIDRTEVGEQPIRKSVSAEVNWGIRFVNQE 639
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
E E F++ L+ E+E+RL +KGK +T+K+M R+A+AP + K LGHG CD KS S
Sbjct: 640 EAEEFVRSLSQELERRLLSEGVKGKHLTMKIMRRAADAPLDPPKHLGHGKCDTFNKSVS- 698
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
F + S E I KE + I
Sbjct: 699 -----------FGVATNSEEV-------------------------------IGKEAVAI 716
Query: 2182 VNKLKVDPVELRGIGIQVSKLE 2203
+ K P +LRG+GIQ++KLE
Sbjct: 717 LRSYKFSPGDLRGLGIQMTKLE 738
Score = 149 bits (377), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 127/483 (26%), Positives = 209/483 (43%), Gaps = 129/483 (26%)
Query: 1321 YMEAKKRKLEEQ-FELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALM 1379
Y + K KL+ + +L +++ + IF+GV I+V GYT+ PS+ +L ++
Sbjct: 42 YFQNKNIKLQNRDAQLRSSAKDKPQIFKGVVIYVLGYTQ-----------PSSSDLHDIL 90
Query: 1380 MLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY 1437
+ HG + Y +T THII S++P K +L +++KP W+VDS++AG++L +
Sbjct: 91 VQHGAGWLQYLGGKTMATHIICSSIPPKKAAELA-NYRVVKPAWVVDSVAAGRMLS---W 146
Query: 1438 LLYTGTDAKPLTKLLQ----------------KSYFENTEAPCCSKSLVETSSHTS---- 1477
Y D P + ++ + Y E TE + L + SS
Sbjct: 147 TEYRVIDEGPKQRTIKFDAGKMLSSQPRQQTPQGYREQTENSFYTSQLKKFSSPAQPKTP 206
Query: 1478 -----TVSDSVDNTEE------------SKSEAVNSEE----SKSEAANPIESKQTVKTK 1516
V+D +++ E+ SKSE + E S + P
Sbjct: 207 SKIPPIVNDKIEDFEDDMSVDLLQVPPSSKSEPLALSEPDGASDEQFNTPPYRAPLEAAP 266
Query: 1517 ESKLETVNISAP--------------KPQASSTKNA-------------SNEDFLGEFYN 1549
E++ T +I+ P KP S NA +N DFL ++Y+
Sbjct: 267 EARPTTPDIAEPENPEPEYPNEMHPVKPITSEEHNARLLADPKMRKASTANPDFLKQYYS 326
Query: 1550 KSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSP 1609
+SRLHHLST + K + L ++ + + P+
Sbjct: 327 ESRLHHLSTWKAQLKSRMQNL-----------------------AAEKGPAKKLAKRPAG 363
Query: 1610 SEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQR 1669
S IMH+D D FF +V ++ PE +D+P VAHG G S++
Sbjct: 364 SRR--YIMHVDFDSFFCAVSLKKAPEYRDKPAVVAHGNGKGSEIAS-------------- 407
Query: 1670 TMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEA 1729
R++G+ NGM++ HAL+ CP+LKI+PYDF GY+E S Y+ I + +++
Sbjct: 408 ----CNYPARKFGVKNGMWMKHALELCPDLKILPYDFPGYEEASRQFYDAILGIGGVVQS 463
Query: 1730 VSL 1732
VS+
Sbjct: 464 VSI 466
>gi|340521292|gb|EGR51527.1| hypothetical protein TRIREDRAFT_75518 [Trichoderma reesei QM6a]
Length = 1103
Score = 184 bits (466), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 119/322 (36%), Positives = 166/322 (51%), Gaps = 59/322 (18%)
Query: 1898 IVSAVSCDEMYVDCSQLL-----------QELSLTPLQ-----FASYLRETIAKETGCTC 1941
IV +VS DE VD + ++ E SL Q A LR I ++T C+
Sbjct: 439 IVQSVSVDEALVDVTDVVLAAAQSRGVGVSEGSLWREQAKVDEMALALRNKIKEQTNCSV 498
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N LQA++A +KAKP+GQF L P+ I + + ++ + +LPGV +S+ KL LG +
Sbjct: 499 SVGIGGNILQAKIALRKAKPDGQFQLRPEQILEIIGDLKVEELPGVAYSIGGKLEDLGVK 558
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
DL++IS +RL +G K L+ + RG D E+ + RKSVSAEVN+GIRF N
Sbjct: 559 LVKDLRDISKERLVAVLGPKTSEKLHDYARGIDRTEVGEQPPRKSVSAEVNWGIRFINQA 618
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
E E F+ L E+EKRL ++KGK +T+KLM R+ +AP + +K LGHG CD KSS+
Sbjct: 619 EAEEFVYDLCKELEKRLVNEQVKGKHLTVKLMRRALDAPLDPTKHLGHGKCDSFNKSSA- 677
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
G DY I KE + I
Sbjct: 678 ----------------------------FGVATHDY--------------QAIGKEAVSI 695
Query: 2182 VNKLKVDPVELRGIGIQVSKLE 2203
+ K P +LRGIG+Q++KLE
Sbjct: 696 LRSFKFSPGDLRGIGVQMTKLE 717
Score = 150 bits (379), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 134/470 (28%), Positives = 210/470 (44%), Gaps = 118/470 (25%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G Y KK KL+ ++ A SD + IF+GV VNGYT+ + + + IV
Sbjct: 38 GDYFRRKKIKLQNLDADIRATSD-KPPIFKGVVAHVNGYTQPPLHVIHHEIVQ------- 89
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHK 1435
HGG + Y S+T THII + LP K + +I+KP W+VDS+ AGKLL
Sbjct: 90 ----HGGGFLQYLDSKTMATHIITATLPPKKAIEFS-RYRIVKPAWVVDSVKAGKLLPWA 144
Query: 1436 KYLLYTGTDAKPLTKL------------LQKSYFENTEAPCCSKSLVETSSHT------- 1476
Y + + + ++ + K ++ Y E T+ + S + SH+
Sbjct: 145 DYRVSSESPSQKILKFDSDRGLTQSSPAARRGYREQTDNSFYT-SQIRAESHSQLAIQLP 203
Query: 1477 ----------STVSDSVDNTEES-------------------KSEAVNSEESKSEAANPI 1507
+ +SD + E+ + E V SE+ AA PI
Sbjct: 204 EQSALSSRWQNDISDMLPQGMENLAATAHEGQLPLEAAAWDIQGEGVESEQHA--AAEPI 261
Query: 1508 ESKQTVKTKESKLETVN-----ISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSM 1562
K+ K+ + +S P+ + SST +N DFL +FY++SRLHHLST +
Sbjct: 262 GQLDASKSPSKKMTSEEHNAWLLSDPRIRKSST---ANPDFLKQFYSESRLHHLSTWKAN 318
Query: 1563 FKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMD 1622
K + L + +G+ + RK K G+ + IMH+D D
Sbjct: 319 LKSSMQRLAAE-----KGL-SNRKTKNRPGLRK-------------------YIMHVDFD 353
Query: 1623 CFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYG 1682
FF +V ++ HPE D+P VAH G S++ + N + R++G
Sbjct: 354 SFFCTVSLKGHPEYVDKPCVVAHSTGAGSEI---------------ASCNYVA---RKFG 395
Query: 1683 LGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSL 1732
+ NGM++ AL+ CP+LK++PYDF Y+EVS Y I +++VS+
Sbjct: 396 VKNGMWMKRALELCPDLKVLPYDFPAYEEVSRQFYEAIMETGGIVQSVSV 445
Score = 45.4 bits (106), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 18/130 (13%)
Query: 1738 FLNALPEDIRQEVLDDLSRQQSVLSR--EQNTTEPLAQDIICADSHTLVRTPSPSPILDM 1795
FL LPED+R+EV+ D R+ L E T + + + P P++
Sbjct: 944 FLAELPEDVRKEVIADHRRRVLALQSGLEMPVTRSHHETSVLPGGQKTIEFPILPPVIAF 1003
Query: 1796 STSILDTTTSHILSSNVSLQEMRTMLREWMCESQ---PEPSDIEMFSEYLSNLV-EERHL 1851
S S+ S E++ M+ W +++ P D+++ YL ++ EER L
Sbjct: 1004 SGSV------------TSAAEIKDMVDAWHAQTRKAGPHKRDVDVLERYLVKVIKEERDL 1051
Query: 1852 NPIVILLRFL 1861
+ V+L+++L
Sbjct: 1052 SKAVMLIKWL 1061
Score = 41.6 bits (96), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 1179 ISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQLIS 1226
+S P+ + SST +N DFL +FY++SRLHHLST + K + +L +
Sbjct: 284 LSDPRIRKSST---ANPDFLKQFYSESRLHHLSTWKANLKSSMQRLAA 328
>gi|85111590|ref|XP_964009.1| hypothetical protein NCU02053 [Neurospora crassa OR74A]
gi|28925767|gb|EAA34773.1| hypothetical protein NCU02053 [Neurospora crassa OR74A]
Length = 1347
Score = 184 bits (466), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 114/322 (35%), Positives = 168/322 (52%), Gaps = 59/322 (18%)
Query: 1898 IVSAVSCDEMYVDCSQL-LQELSLTPL---------------QFASYLRETIAKETGCTC 1941
+V +VS DE +D + + + E + + Q AS LR+ I ++T C
Sbjct: 460 VVQSVSIDEALIDVTDIVMAEAGSSGIGISEGSIWREQEKVDQMASKLRDRIKEQTDCHV 519
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G+N L A++A +KAKP GQ+ + P+ DF+ + + DLPGV HS+ KL LG +
Sbjct: 520 SVGIGANILLAKVALRKAKPAGQYQIKPEEALDFLGELNVEDLPGVAHSIGAKLEELGIK 579
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ S +RL + +G K G L+++ RG D E+ + RKSVSAEVN+GIRF N +
Sbjct: 580 FVKDIRQTSKERLISALGPKTGEKLWEYSRGIDRTEVGEQPIRKSVSAEVNWGIRFVNQE 639
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
E E F++ L+ E+E+RL +KGK +T+K+M R+A+AP + K LGHG CD KS S
Sbjct: 640 EAEEFVRSLSQELERRLLSEGVKGKHLTMKIMRRAADAPLDPPKHLGHGKCDTFNKSVS- 698
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
F + S E I KE + I
Sbjct: 699 -----------FGVGTNSGEV-------------------------------IGKEAVAI 716
Query: 2182 VNKLKVDPVELRGIGIQVSKLE 2203
+ K P +LRG+GIQ++KLE
Sbjct: 717 LRSYKFSPGDLRGLGIQMTKLE 738
Score = 152 bits (385), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 126/483 (26%), Positives = 211/483 (43%), Gaps = 129/483 (26%)
Query: 1321 YMEAKKRKLEEQ-FELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALM 1379
Y + K KL+ + +L +++ + IF+G+ I+V GYT+ PS+ +L ++
Sbjct: 42 YFQNKNIKLQNRDAQLRSSAKDKPQIFKGLVIYVLGYTQ-----------PSSSDLHDIL 90
Query: 1380 MLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY 1437
+ HG + Y +T THII S++P K +L +++KP W+VDS++AG++L +Y
Sbjct: 91 VQHGAGWLQYLGGKTMATHIICSSIPPKKAAELA-NYRVVKPAWVVDSVAAGRMLSWTEY 149
Query: 1438 LLYTGTDAKPLTKLLQ----------------KSYFENTEAPCCSKSLVETSSHTS---- 1477
+ D P + ++ + Y E TE + L + SS
Sbjct: 150 RV---VDEGPKQRTIKFDAGKMLSSQPRQQTPQGYREQTENSFYTSQLKKFSSPAQPKTP 206
Query: 1478 -----TVSDSVDNTEE------------SKSEAVNSEE----SKSEAANPIESKQTVKTK 1516
V+D +++ E+ SKSE + E S ++ P
Sbjct: 207 SKIPPIVNDKIEDFEDDMSVDLLQVPPSSKSEPLALSEPDGASDEQSNTPPYRAPLEAAP 266
Query: 1517 ESKLETVNISAP--------------KPQASSTKNA-------------SNEDFLGEFYN 1549
E++ T +I+ P KP S NA +N DFL ++Y+
Sbjct: 267 EARPTTPDIAEPENPEPEKTNELHPAKPITSEEHNARLLADPKMRKASTANPDFLKQYYS 326
Query: 1550 KSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSP 1609
+SRLHHLST + K + L ++ + + P+
Sbjct: 327 ESRLHHLSTWKAQLKSRMQNL-----------------------AAEKGPAKKLAKRPAG 363
Query: 1610 SEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQR 1669
S IMH+D D FF +V ++ PE +D+P VAHG G S++
Sbjct: 364 SRR--YIMHVDFDSFFCAVSLKKAPEYRDKPAVVAHGNGKGSEIAS-------------- 407
Query: 1670 TMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEA 1729
R++G+ NGM++ HAL+ CP+LKI+PYDF GY+E S Y+ I + +++
Sbjct: 408 ----CNYPARKFGVKNGMWMKHALELCPDLKILPYDFPGYEEASRQFYDAILEIGGVVQS 463
Query: 1730 VSL 1732
VS+
Sbjct: 464 VSI 466
>gi|326478944|gb|EGE02954.1| DNA damage repair protein Mus42 [Trichophyton equinum CBS 127.97]
Length = 1153
Score = 184 bits (466), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 114/321 (35%), Positives = 168/321 (52%), Gaps = 59/321 (18%)
Query: 1898 IVSAVSCDEMYVDCS-----------QLLQELSLTPLQ-----FASYLRETIAKETGCTC 1941
IV +VS DE VD S + + E S+ Q A LR++I ++TGC
Sbjct: 443 IVQSVSIDEALVDISSSCIQAGGSDGRAISESSIYREQEKADTIAQKLRDSIKQKTGCHV 502
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N LQARLA KKAKP GQF L P+ + DF+ ++DLPGV HSL KL L +
Sbjct: 503 SVGIGQNILQARLALKKAKPAGQFQLKPENMLDFIGEFTVTDLPGVAHSLGAKLEELRVK 562
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ +S ++L +G K G L+++ RG D+ + + RKSVSAE+N+GIRF +
Sbjct: 563 YVKDIRQLSREKLTGHLGPKTGAKLWEYARGIDNTVVGEQVIRKSVSAEINWGIRFTSQA 622
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ + F++ L+ E+ +RL E +KG+ +T+++M R+A++P + K LGHG CD KS
Sbjct: 623 QADEFVRSLSEELHRRLLENGVKGRQLTMRIMRRAADSPVDPPKHLGHGKCDTFNKS--- 679
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
II + P AS +G KE + I
Sbjct: 680 -------IILH---------TPTNASDIIG------------------------KEAVSI 699
Query: 2182 VNKLKVDPVELRGIGIQVSKL 2202
+ P +LRG+GIQ++KL
Sbjct: 700 IRSFNFSPGDLRGLGIQMTKL 720
Score = 160 bits (404), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 144/509 (28%), Positives = 223/509 (43%), Gaps = 108/509 (21%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G Y KK KL+ E+ + S + IF+GV VNGYT+ PS +L
Sbjct: 38 GDYFRRKKIKLQNLDAEIRSASPNNPPIFKGVVAHVNGYTQ-----------PSLNDLHR 86
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHK 1435
+++ HGG + Y +T THIIAS L K ++ + +++KP WIVDSI AG++L +
Sbjct: 87 MIVSHGGGFLQYLDGKTAATHIIASALTPKKKEEFR-RYRVVKPAWIVDSIKAGRMLPWE 145
Query: 1436 KY-LLYTGTDAKPL----------TKLLQKSYFENTEA------------PCCSKSLVET 1472
Y LL GT K L +SY T++ P S+S+V+
Sbjct: 146 TYRLLDEGTAQKVLKFDANGISTENNTQSQSYKAQTDSCWYTSQLNKEVSPVESQSIVKC 205
Query: 1473 SSHTSTVSDSVDNTEESKSEAVNSEESKSEA-ANPIESK--------QTVKTKESKLETV 1523
S T +++ +A + + A A P E V + S LE V
Sbjct: 206 PSADITEDPHLEDEPAIDVQATDQVNGVAMAPATPEEFGALGSDDLLSPVHPERSSLEQV 265
Query: 1524 NIS----APKPQASSTKNA-------------SNEDFLGEFYNKSRLHHLSTMGSMFKQY 1566
+ S KP S NA N DF+ ++Y +SRLHHLST + K
Sbjct: 266 HTSPKADGRKPLTSEEHNALLLSKAHIRQSSVVNPDFIQQYYRESRLHHLSTWKAELKAK 325
Query: 1567 VNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFV 1626
+ L ++ RG + K G I+H+D D FF
Sbjct: 326 LQSLTQE-----RGTAKLSPIKRPPGTRR-------------------YILHVDFDSFFA 361
Query: 1627 SVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNG 1686
+V ++ HPEL D P+AVAHG G S++ R++G+ NG
Sbjct: 362 AVSLQKHPELADYPIAVAHGTGPGSEIAS------------------CNYPARKFGVKNG 403
Query: 1687 MFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDI 1746
M++ AL++CP LK++PYDF Y++ S Y I + +++VS+ +E+ ++ I
Sbjct: 404 MWMKGALERCPELKVLPYDFPAYEDASRKFYEAILDIDGIVQSVSI--DEALVDISSSCI 461
Query: 1747 RQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
+ D + +S + REQ + +AQ +
Sbjct: 462 QAGGSDGRAISESSIYREQEKADTIAQKL 490
>gi|336463458|gb|EGO51698.1| hypothetical protein NEUTE1DRAFT_132571 [Neurospora tetrasperma FGSC
2508]
Length = 1351
Score = 183 bits (465), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 114/322 (35%), Positives = 168/322 (52%), Gaps = 59/322 (18%)
Query: 1898 IVSAVSCDEMYVDCSQL-LQELSLTPL---------------QFASYLRETIAKETGCTC 1941
+V +VS DE +D + + + E + + Q AS LR+ I ++T C
Sbjct: 460 VVQSVSIDEALIDVTDIVMAEAGSSGIGISEGSIWREQEKVDQMASKLRDRIKEQTDCHV 519
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G+N L A++A +KAKP GQ+ + P+ DF+ + + DLPGV HS+ KL LG +
Sbjct: 520 SVGIGANILLAKVALRKAKPAGQYQIKPEEALDFLGELNVEDLPGVAHSIGAKLEELGIK 579
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ S +RL + +G K G L+++ RG D E+ + RKSVSAEVN+GIRF N +
Sbjct: 580 FVKDIRQTSKERLISALGPKTGEKLWEYSRGIDRTEVGEQPIRKSVSAEVNWGIRFVNQE 639
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
E E F++ L+ E+E+RL +KGK +T+K+M R+A+AP + K LGHG CD KS S
Sbjct: 640 EAEEFVRSLSQELERRLLSEGVKGKHLTMKIMRRAADAPLDPPKHLGHGKCDTFNKSVS- 698
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
F + S E I KE + I
Sbjct: 699 -----------FGVATNSEEV-------------------------------IGKEAVAI 716
Query: 2182 VNKLKVDPVELRGIGIQVSKLE 2203
+ K P +LRG+GIQ++KLE
Sbjct: 717 LRSYKFSPGDLRGLGIQMTKLE 738
Score = 154 bits (389), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 128/483 (26%), Positives = 210/483 (43%), Gaps = 129/483 (26%)
Query: 1321 YMEAKKRKLEEQ-FELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALM 1379
Y + K KL+ + +L +++ + IF+GV I+V GYT+ PS+ +L ++
Sbjct: 42 YFQNKNIKLQNRDAQLRSSAKDKPQIFKGVVIYVLGYTQ-----------PSSSDLHDIL 90
Query: 1380 MLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY 1437
+ HG + Y +T THII S++P K +L +++KP W+VDS++AG++L +Y
Sbjct: 91 VQHGAGWLQYLGGKTMATHIICSSIPPKKAAELA-NYRVVKPAWVVDSVAAGRMLSWTEY 149
Query: 1438 LLYTGTDAKPLTKLLQ----------------KSYFENTEAPCCSKSLVETSSHTS---- 1477
+ D P + ++ + Y E TE + L + SS
Sbjct: 150 RV---IDEGPKQRTIKFDAGKMLSSQPRQQTPQGYREQTENSFYTSQLKKFSSPAQPKTP 206
Query: 1478 -----TVSDSVDNTEE------------SKSEAVNSEE----SKSEAANPIESKQTVKTK 1516
V+D +++ E+ SKSE + E S + P
Sbjct: 207 SKIPPIVNDKIEDFEDDMSVDLLQVPPSSKSEPLALAEPDGPSDEQFNTPPYQAPLEAAP 266
Query: 1517 ESKLETVNISAP--------------KPQASSTKNA-------------SNEDFLGEFYN 1549
E++ T +I+ P KP S NA +N DFL ++Y+
Sbjct: 267 EAQPTTPDIAEPENSEPEKPNELHAAKPITSEEHNARLLADPKMRKASTANPDFLKQYYS 326
Query: 1550 KSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSP 1609
+SRLHHLST + K + L +E + + P+
Sbjct: 327 ESRLHHLSTWKAQLKSRMQNL-----------------------AAEEGPAKKLAKRPAG 363
Query: 1610 SEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQR 1669
S IMH+D D FF +V ++ PE +D+P VAHG G S++
Sbjct: 364 S--RRYIMHVDFDSFFCAVSLKKAPEYRDKPAVVAHGNGKGSEIAS-------------- 407
Query: 1670 TMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEA 1729
R++G+ NGM++ HAL+ CP+LKI+PYDF GY+E S Y+ I + +++
Sbjct: 408 ----CNYPARKFGVKNGMWMKHALELCPDLKILPYDFPGYEEASRQFYDAILGIGGVVQS 463
Query: 1730 VSL 1732
VS+
Sbjct: 464 VSI 466
>gi|452981023|gb|EME80783.1| hypothetical protein MYCFIDRAFT_204073 [Pseudocercospora fijiensis
CIRAD86]
Length = 1213
Score = 183 bits (465), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 166/322 (51%), Gaps = 59/322 (18%)
Query: 1898 IVSAVSCDEMYVDCSQL-LQELSLTPLQ---------------FASYLRETIAKETGCTC 1941
IV +VS DE VD S + + E +Q A +RE + +TGC
Sbjct: 513 IVQSVSIDEALVDISAICIAESGSNGVQRDEGAVYREQKKADAVAQDMREEVLAKTGCNV 572
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N LQA+ A +KAKP GQ+ L P+ + DFM + ++ LPGV +S+ KL +G +
Sbjct: 573 SVGIGGNILQAKCALRKAKPAGQYQLRPEEVLDFMGALEVTKLPGVAYSIGGKLEEIGIK 632
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D+++ S +RL N +G K G L+++ RG D E+ + RKSVSAEVN+G+RF++ +
Sbjct: 633 LVKDIRDTSKERLVNTLGPKTGEKLWEYARGIDKTEVGDQVIRKSVSAEVNWGVRFESQE 692
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+++ F+ L+GE+ KRL + ++KGK +T+K M R+A+AP + K LGHG CD KS L
Sbjct: 693 QVDEFMHGLSGELSKRLLKERVKGKQLTMKAMKRAADAPLDPPKHLGHGKCDVFNKSMQL 752
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
I H V + KE +
Sbjct: 753 GIATN------------------------DHAV-------------------LTKETTAM 769
Query: 2182 VNKLKVDPVELRGIGIQVSKLE 2203
+ + P ELRGIGIQ+ KLE
Sbjct: 770 MKSFCISPGELRGIGIQMQKLE 791
Score = 106 bits (265), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 114/234 (48%), Gaps = 44/234 (18%)
Query: 1542 DFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEE 1601
DFL ++Y +SRLHHLST + K ++A+ +TS + L
Sbjct: 371 DFLEQYYRESRLHHLSTWKADLKSQ--------------LQALAAERTSTQKAGQKKL-- 414
Query: 1602 TFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQA 1661
P + +MH+D D FF +V ++ P+ +D+P VAHG G+ S++
Sbjct: 415 -------PGQRR-YVMHVDFDSFFAAVSLKKFPQYKDKPAVVAHGGGSGSEIAS------ 460
Query: 1662 EFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIA 1721
R++G+ NGM++ A + CP LK++PYDF GY+E S Y++I
Sbjct: 461 ------------CNYPARKFGVSNGMWMRRAQELCPELKVLPYDFPGYEEASRQFYDVIM 508
Query: 1722 SLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
+ +++VS+ +E+ ++ I + + + R + + REQ + +AQD+
Sbjct: 509 ATGGIVQSVSI--DEALVDISAICIAESGSNGVQRDEGAVYREQKKADAVAQDM 560
Score = 72.8 bits (177), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 65/120 (54%), Gaps = 15/120 (12%)
Query: 1321 YMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALM 1379
Y KK KL+ EL + S + IF+G+ VNGYT+ PS +L ++
Sbjct: 41 YFRRKKIKLQNLDAELRSQSADKPQIFRGLVCHVNGYTQ-----------PSLNDLHTMV 89
Query: 1380 MLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY 1437
+ HGG + Y +T THIIASNL K ++ + +I+KP WIVDSI AG+LL Y
Sbjct: 90 VQHGGGFVQYLDGKTMVTHIIASNLTPKKKEEFR-RYRIVKPAWIVDSIKAGRLLPWDAY 148
>gi|238694884|ref|YP_002922078.1| topoisomerase II large subunit [Enterobacteria phage JSE]
gi|220029020|gb|ACL77955.1| topoisomerase II large subunit [Enterobacteria phage JSE]
Length = 607
Score = 183 bits (465), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 187/643 (29%), Positives = 298/643 (46%), Gaps = 87/643 (13%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
++ S EH+L R YIGS +L + T +I+YVPGL KI DEI+ N+
Sbjct: 4 FRILSDREHVLKRAGMYIGSTTYEEHQRFLFGKWT------KISYVPGLVKIIDEIIDNS 57
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D R I+V+ + N ++V +NG+GIP H++T+
Sbjct: 58 VDEAIRTNFEFANVISVDIQNNIVTVTDNGRGIP----------------QHMVTTP--- 98
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
E ++ P + SN+ D+ +++T G NG G+ L N FS F T E +
Sbjct: 99 -EGTQIPQ--PVAAWTRTKAGSNF-DDTNRLTQGMNGVGSSLSNFFSDWFTGVTCDGETE 154
Query: 216 KSFKQV-WKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
+ + +N++ + P G TK+TF PD F+ +D ++D++ R
Sbjct: 155 MTVQCTNGAENITWSSKPSKLKG-----TKVTFCPDFDHFEGYMMDNSVLDIVHDRLQSL 209
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRG 334
+ + NG+++ V F+DY KLY D DP I E+ N + A G
Sbjct: 210 SVIFPKITFKFNGKRI-VSKFKDYAKLYND------DPFVI--EDKNFSLALVPAVEGEG 260
Query: 335 FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNK----------DLGCTIIM--L 382
F+ VSF N + T GG HVD V D + ++I++ +KK+ K L C +I+ L
Sbjct: 261 FKSVSFANGLFTKNGGTHVDYVTDDLCEEIVKRIKKEYKVDVTKAAVKSGLTCILIVREL 320
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMAL-KPFQVKNHIWIFINCLIVNPTFDSQTKE 441
+F++ +L I + L L K K +I + I +++ +
Sbjct: 321 PNLRFDSQTKERLTNPTGDIKRHIDLDFKKLAKVIAKKENIIMPIIAVVLARKEAADKAA 380
Query: 442 NMTLQKGSFGSTCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVF 501
K + + ++ AN GT + TL LTEGDSA + +S V +D +G F
Sbjct: 381 ATKAAKAAKRAKVAKHVK-ANLIGT--DAETTLFLTEGDSAINYLIS---VRDQDLHGGF 434
Query: 502 PLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQ 561
PLRGK L E +I++NAEI N++ I GLQ+ V+ ++ ++Y + IMTD D
Sbjct: 435 PLRGKTLTTWEQPEAKIVKNAEIFNIMAITGLQFG-----VDALEVMQYKNIAIMTDADT 489
Query: 562 DG-SHIKGLIINFIHHNWPTLL---RLPFLEEFITPIIKA--TKAREELSFYSLPEFEEW 615
DG IK +I+F WP L R+ F++ TPII A K + +Y L +FE
Sbjct: 490 DGIGSIKPSLISFFAR-WPELFEDGRIRFIK---TPIIIAEPKKGDDVRWYYDLEDFEND 545
Query: 616 KEETTNWHTYKIKYYKVVYVTGVL-LFKMNLHKVTSDSISMFI 657
++ IK Y + Y+ G+ L + + H+V +D + I
Sbjct: 546 RD--------NIKGYNIRYIKGLASLTESDYHRVINDPVMEII 580
>gi|70947313|ref|XP_743285.1| DNA topoisomerase II [Plasmodium chabaudi chabaudi]
gi|56522707|emb|CAH74370.1| DNA topoisomerase II, putative [Plasmodium chabaudi chabaudi]
Length = 937
Score = 183 bits (465), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/145 (60%), Positives = 113/145 (77%), Gaps = 4/145 (2%)
Query: 488 SGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKT 547
+GL +VGRD+YGVFPL+GKLLNVR+A+ KQ+++N EI N+ KI+GL + K +D+K
Sbjct: 1 AGLSIVGRDRYGVFPLKGKLLNVRDASFKQLMDNKEIQNIFKIMGLDITDK--NKQDIKG 58
Query: 548 LRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSF 606
LRYG LMIMTDQD DGSHIKGL+IN IH WP+LL+ FL EF+TPI+K K +ELSF
Sbjct: 59 LRYGSLMIMTDQDYDGSHIKGLLINMIHKFWPSLLKHKGFLCEFVTPIVKVQKGNQELSF 118
Query: 607 YSLPEFEEWKEETTNWHTYKIKYYK 631
+++ E+E+WK E TN +KIKYYK
Sbjct: 119 FTIAEYEQWK-ENTNLLGWKIKYYK 142
Score = 129 bits (323), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 98/154 (63%), Gaps = 6/154 (3%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP++YIP+IP +LVNG EGIGTG+ + IPN+N ++I++NIK+ I E +PM PWYK+
Sbjct: 351 KIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIINNIKKYIDKEPLVPMVPWYKD 410
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDEVHPG 778
FKG I+ G S + G I +DD+ LEITEL + +WT DYK+ L+ LL + +
Sbjct: 411 FKGRIESNGKSGYETIGIINKIDDETLEITELPIKRWTQDYKEFLEELLTDEKNQLILDY 470
Query: 779 PGRKSHPRPIAPKSYKID----DDSEEEEIEEVF 808
SH + K+D +EEE +E+VF
Sbjct: 471 IDNSSHEDVCF--TIKMDPVKLKKAEEEGLEKVF 502
Score = 45.4 bits (106), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
KDY+YLL M +SLT+E+ ELL + +K EL ILK +W D++ + E
Sbjct: 634 KDYNYLLNMPIFSLTLEKVEELLAQLKEKEQELEILKSITVETMWLKDIEKVEE 687
>gi|435844544|ref|YP_007006648.1| gp41 [Sphingomonas phage PAU]
gi|380885854|gb|AFF28039.1| gp41 [Sphingomonas phage PAU]
Length = 640
Score = 183 bits (465), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 180/657 (27%), Positives = 291/657 (44%), Gaps = 154/657 (23%)
Query: 29 KMSVEKI---YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLY 85
K+S E+I Y+ K ++EHIL R + ++GS P T+ ++N E + +E ++ITY+P +
Sbjct: 3 KLSNEEILDKYRMKDEIEHILTRSEMFVGSKAPETKVTNIINSE-DKVESQKITYIPAVL 61
Query: 86 KIFDEILVNACDNKQRD----PKMNCIKITVNQETNT-ISVWNNGKGIPVVEHKDEKMFV 140
K+ DE+L N+ D +R+ KI + N I++ +NG GIP H
Sbjct: 62 KVIDEVLSNSVDEYRRNIAGTSNSGVTKIDIEIRRNGHITIQDNG-GIPTDIHP------ 114
Query: 141 PTMIFGHLLTSSNYNDEEDKVTGV-VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCN 199
+TG +P +F +L TS+NY+D + + G NG GA L N
Sbjct: 115 --------------------LTGQPIPAFLFSNLRTSTNYDDTKSRNVTGTNGVGAVLTN 154
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKI-TFTPDLTKFKMTS 258
IFS++F V+TS + +++ + W++N+S VT ++ SK I F D+++F +
Sbjct: 155 IFSNRFTVKTSLNPKGQTYIKTWENNLS-VTKDDVFEKSKGFKGSIFDFEIDMSRFSLDE 213
Query: 259 -----LDKDMVDLITRRAYDAAASTKDVKVFLNGEKL----PVKNFQDYVKLYTDRQDED 309
++ +++ L RR DAA + + + L E +F+DY+ ++
Sbjct: 214 NQEEIINDEVLSLFKRRCIDAAGANPGLTISLKIEDYERTWKFNSFKDYISTFSGI---- 269
Query: 310 GDPVKIIYENVNPRWEVAIAP-SDRGFQQVSFVNSIATTKGGRHVD-AVVDAIVKQIIEV 367
D K+I E N +WE+ P +D+ ++ FVN A GRH + VV+A+ + +
Sbjct: 270 -DASKLIGEK-NDQWEIYYYPNADKEAYEIGFVNG-AECNIGRHFEVGVVEAV--EALGR 324
Query: 368 VKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFIN 427
+ K+NK L C Q NH +FIN
Sbjct: 325 LLKRNK-LTCDY------------------------------------RQFVNHCHVFIN 347
Query: 428 CLIVNPTFDSQTKENMT-------------LQKGSFGSTC-------------------- 454
+ NP + +QTKE ++ L +G C
Sbjct: 348 MNVPNPVYSNQTKEKLSTKADKLTEKGRPALSQGLKRLLCESEIIQLLLDWHEQSKKAGE 407
Query: 455 ----------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKY 498
V KL DAN +N +C L + EG+SA S + + KY
Sbjct: 408 RKKLRDLANEQAKKVKVAKLVDANAKTNRN--ECELWVFEGESASSGFRNARNPETQAKY 465
Query: 499 GVFPLRGKLLNVREATHKQILE-NAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMT 557
L+GK++N + QI + N E ++V + L D ++LRYG+++I T
Sbjct: 466 ---DLKGKVMNTFGMSRLQIFQRNVEYRDMVTAINLPIDNSKI---DFESLRYGKIIITT 519
Query: 558 DQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEE 614
D D DG I +I+F +HN+ LL + I PII A K E FYS+ EF +
Sbjct: 520 DMDVDGDSIAAQLISFYYHNYRELLEAGMIYRAIAPIISAEKDGEVKLFYSVKEFND 576
>gi|157311305|ref|YP_001469348.1| gp60+39 topoisomerase II large subunit [Enterobacteria phage Phi1]
gi|149380509|gb|ABR24514.1| gp60+39 topoisomerase II large subunit [Enterobacteria phage Phi1]
Length = 607
Score = 183 bits (465), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 187/643 (29%), Positives = 298/643 (46%), Gaps = 87/643 (13%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
++ S EH+L R YIGS +L + T +I+YVPGL KI DEI+ N+
Sbjct: 4 FRILSDREHVLKRAGMYIGSTTYEEHQRFLFGKWT------KISYVPGLVKIIDEIIDNS 57
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D R I+V+ + N ++V +NG+GIP H++T+
Sbjct: 58 VDEAIRTNFEFANVISVDIQNNIVTVTDNGRGIP----------------QHMVTTP--- 98
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
E ++ P + SN+ D+ +++T G NG G+ L N FS F T E +
Sbjct: 99 -EGTQIPQ--PVAAWTRTKAGSNF-DDTNRLTQGMNGVGSSLSNFFSDWFTGVTCDGETE 154
Query: 216 KSFKQV-WKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
+ + +N++ + P G TK+TF PD F+ +D ++D++ R
Sbjct: 155 MTVQCTNGAENITWSSKPSKLKG-----TKVTFCPDFDHFEGYMMDNSVLDIVHDRLQSL 209
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRG 334
+ + NG+++ V F+DY KLY D DP I E+ N + A G
Sbjct: 210 SVIFPKITFKFNGKRI-VSKFKDYAKLYND------DPFVI--EDKNFSLALVPAVEGEG 260
Query: 335 FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNK----------DLGCTIIM--L 382
F+ VSF N + T GG HVD V D + ++I++ +KK+ K L C +I+ L
Sbjct: 261 FKSVSFANGLFTKNGGTHVDYVTDDLCEEIVKRIKKEYKVDVTKAAVKSGLTCILIVREL 320
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMAL-KPFQVKNHIWIFINCLIVNPTFDSQTKE 441
+F++ +L I + L L K K +I + I +++ +
Sbjct: 321 PNLRFDSQTKERLTNPTGDIKRHIDLDFKKLAKVIAKKENIIMPIIAVVLARKEAADKAA 380
Query: 442 NMTLQKGSFGSTCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVF 501
K + + ++ AN GT + TL LTEGDSA + +S V +D +G F
Sbjct: 381 ATKAAKAAKRAKVAKHVK-ANLIGT--DAETTLFLTEGDSAINYLIS---VRDQDLHGGF 434
Query: 502 PLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQ 561
PLRGK L E +I++NAEI N++ I GLQ+ V+ ++ ++Y + IMTD D
Sbjct: 435 PLRGKTLTTWEQPEAKIVKNAEIFNIMAITGLQFG-----VDALEVMQYKNIAIMTDADT 489
Query: 562 DG-SHIKGLIINFIHHNWPTLL---RLPFLEEFITPIIKA--TKAREELSFYSLPEFEEW 615
DG IK +I+F WP L R+ F++ TPII A K + +Y L +FE
Sbjct: 490 DGIGSIKPSLISFFAR-WPELFEDGRIRFIK---TPIIIAEPKKGDDVRWYYDLEDFEND 545
Query: 616 KEETTNWHTYKIKYYKVVYVTGVL-LFKMNLHKVTSDSISMFI 657
++ IK Y + Y+ G+ L + + H+V +D + I
Sbjct: 546 RD--------NIKGYSIRYIKGLASLTESDYHRVINDPVMEII 580
>gi|341887090|gb|EGT43025.1| hypothetical protein CAEBREN_31496 [Caenorhabditis brenneri]
Length = 1051
Score = 183 bits (464), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 141/238 (59%), Gaps = 5/238 (2%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSL-TPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATK 1957
+ AVSCDEMY++ S L ++ + P A ++R+ I + T C S G GS L ARLAT+
Sbjct: 557 LRAVSCDEMYINMSSLSEKYRIEDPTLLAEHIRKMIKERTRCPASVGIGSTSLLARLATR 616
Query: 1958 KAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQT--CGDLQNISLKRLQ 2015
AKP+G F +T + ++F+ + DLPG G+ ++ +L S + CG LQ S + L
Sbjct: 617 HAKPDGVFWVTEEKRNEFISEEKIRDLPGFGYEMMNRLTSFFGEISKCGHLQQKSERELI 676
Query: 2016 NEVGNKNGLTLYKHCRG--EDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGE 2073
G K ++K CRG ED + H RKSVS ++NYGIRF E+ + + E
Sbjct: 677 PVFGPKLATKIFKQCRGIEEDADDFWRTHVRKSVSCDINYGIRFTKKDEVLQLMTAIGIE 736
Query: 2074 VEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIIT 2131
+E++L + KM ITLKLMVRS AP + +KF+GHG+CD TK+ ++PI R ++T
Sbjct: 737 LERKLTDSKMNAGSITLKLMVRSVNAPLQTAKFMGHGICDTFTKTCNIPITNRADVLT 794
Score = 114 bits (284), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 112/230 (48%), Gaps = 36/230 (15%)
Query: 1520 LETVNISAPKPQASSTKN------ASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREK 1573
L + N + P SS+ N A N +F+ ++Y +SRLH +ST+ K +V L K
Sbjct: 371 LTSSNQGSSAPNTSSSDNPNRFLDARNPNFIRDYYARSRLHLISTLAQDMKDFVANL--K 428
Query: 1574 HDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHH 1633
+G K + +EDL + + ++ H+D+DCFFVSV +R
Sbjct: 429 MEG-----------KLTEKCFPEEDLIQMGQKQETEESCGSIVFHVDLDCFFVSVAVRDR 477
Query: 1634 PELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHAL 1693
+L+++ VA+ H KG S V R G+ NGM V AL
Sbjct: 478 EDLKNKAVAITHSKGTISNSMSEV--------------ASCSYAARSCGVKNGMLVRDAL 523
Query: 1694 KKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS---LYTNESFLN 1740
+KCP L ++PY F+ Y +VS +Y ++AS TL++ AVS +Y N S L+
Sbjct: 524 QKCPQLTLLPYQFDDYVQVSRQIYQILASYTLDLRAVSCDEMYINMSSLS 573
Score = 82.4 bits (202), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 80/152 (52%), Gaps = 15/152 (9%)
Query: 1321 YMEAKKRKLEEQFELEANS--DSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKAL 1378
YM K KL Q ++ + I +G ++FVNGYT P A ++ L
Sbjct: 246 YMRMKITKLNHQVNSARSNPYEKVSEILKGYSVFVNGYTD-----------PPALVIRDL 294
Query: 1379 MMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY 1437
MM HGG YH +Y+ TT+ IAS++ KI +++ + IK +WI +SI+AGK LD++ +
Sbjct: 295 MMAHGGEYHCYYQHGITTYTIASSIATAKINRIREKEVFIKADWITESIAAGKPLDYRDF 354
Query: 1438 LLY-TGTDAKPLTKLLQKSYFENTEAPCCSKS 1468
L+Y G+ K + S + + AP S S
Sbjct: 355 LIYEKGSQEKGQMQQFLTSSNQGSSAPNTSSS 386
>gi|336367955|gb|EGN96299.1| hypothetical protein SERLA73DRAFT_59278 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380680|gb|EGO21833.1| hypothetical protein SERLADRAFT_372476 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1186
Score = 183 bits (464), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 116/328 (35%), Positives = 164/328 (50%), Gaps = 54/328 (16%)
Query: 1899 VSAVSCDEMYVDC----SQLLQELSLTPL----------QFASYLRETIAKETGCTCSTG 1944
+ AVS DE +D S + ++S P+ + A +R+ I K T C S G
Sbjct: 530 LQAVSVDEALLDVTSAVSDVKNQVSRLPVSEAITRDPAKELAEKIRDEIRKATECEVSIG 589
Query: 1945 FGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNS-LGAQTC 2003
N L ARLAT++AKP FHL P+ + +F+ + + DL G GHS K LG T
Sbjct: 590 IAENILLARLATRRAKPAASFHLVPEKVHEFLAPLDVDDLHGFGHSTRQKTQEKLGVTTL 649
Query: 2004 GDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEM 2063
G+L S L + +G G TLYK RG D++ L + RKSVS ++NYGIRF+N ++
Sbjct: 650 GELAKKSKAVLCDALGKGTGETLYKAIRGIDERRLESDKPRKSVSCDINYGIRFENGEQA 709
Query: 2064 ETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPI 2123
+TF+ Q+A EV +RL + M G+ +TLK+M R AP EA KF+GHGVC+ +K
Sbjct: 710 KTFIYQMAQEVSRRLNSIYMLGRSLTLKIMKRDPNAPVEAPKFMGHGVCETFSKQ----- 764
Query: 2124 YERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVN 2183
+ L P A+ +G D+ K ++
Sbjct: 765 ----------MALSGPNGRPTSATTVIG----DHAWK--------------------LLE 790
Query: 2184 KLKVDPVELRGIGIQVSKLEHQSKTLAT 2211
DP ELRGIGIQ+ KLE S + +T
Sbjct: 791 SFDFDPKELRGIGIQIQKLEMSSNSGST 818
Score = 168 bits (426), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 136/478 (28%), Positives = 216/478 (45%), Gaps = 101/478 (21%)
Query: 1319 GGYMEAKKRKLEEQ---FELEANSDS-RGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEE 1374
G YM K+ KL+ Q ++ N DS R IF+G+AI++NG+T+ PS ++
Sbjct: 109 GEYMRRKRAKLQIQNADMDVSENDDSERRTIFKGLAIYINGWTE-----------PSVQD 157
Query: 1375 LKALMMLHGGIYHHY--ESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL 1432
L+ L++ HGGIYH Y + S THII +L KI++ K K+++PEW+V+S ++G LL
Sbjct: 158 LRQLIIKHGGIYHPYLDKKSLVTHIITCSLTPAKIREFK-NMKVVRPEWLVESAASGSLL 216
Query: 1433 DHKKYLLYTGTDAKPL--TKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESK 1490
K Y+ G + T+ Q+S F ++ E+ H T + +E+
Sbjct: 217 PWKNYIFRPGDRLQESQGTRTTQQSLF----------TISESRPHAITGHPNNQTPQEAP 266
Query: 1491 SEAVN---SEESKSEAANPIESKQTVKTKESKLE-----------TVNISAPK----PQA 1532
VN + A +S+ T E T N+ A + P+
Sbjct: 267 QSEVNPFNDSPTTHPATKTFDSRPLYMTDPGTYEEAARIPGYAAHTSNLMAERVMANPEW 326
Query: 1533 SSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNE--LREKHDGVFRGIEAIRKWKTS 1590
+ + DF+ FY SRLHHLST + K V E +R ++ + E+
Sbjct: 327 RAAHTSIAPDFIEGFYKNSRLHHLSTWKAELKNLVLEAQIRAENGAMVTPSESSH----- 381
Query: 1591 LGITEDEDLEETFSDNPSPSEPEP----------------------------VIMHIDMD 1622
T++ + D+P P EPE VIMH D D
Sbjct: 382 ---TKNPQVSRKLQDDPIP-EPEDGVSMKGAELTIRTSPKGKGKAKALQIERVIMHCDFD 437
Query: 1623 CFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYG 1682
CFFVS G+ P+L+ +PVAV H +G+ G +E + R +G
Sbjct: 438 CFFVSAGLVSRPQLRGKPVAVCHSQGSQG----GAASTSE--------IASASYEARSFG 485
Query: 1683 LGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLN 1740
+ NGM + A K CP + +PY+FE Y++ S Y ++ +++AVS+ +E+ L+
Sbjct: 486 VKNGMSLQQARKLCPTIVTIPYEFEKYRQFSLQFYTVLMRYADDLQAVSV--DEALLD 541
>gi|85699996|gb|ABC74449.1| REV1 [Neurospora tetrasperma]
Length = 1342
Score = 183 bits (464), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 167/322 (51%), Gaps = 59/322 (18%)
Query: 1898 IVSAVSCDEMYVDCSQL-LQELSLTPL---------------QFASYLRETIAKETGCTC 1941
+V +VS DE +D + + + E + + Q A LR+ I ++TGC
Sbjct: 460 VVQSVSIDEALIDVTDIVMAEAGSSGIGISEGSIWREQEKVDQMALKLRDRIKEQTGCHV 519
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G+N L A++A +KAKP GQ+ + P+ DF+ + + DLPGV HS+ KL LG +
Sbjct: 520 SVGIGANILLAKVALRKAKPAGQYQIKPEEALDFLGELNVEDLPGVAHSIGAKLEELGIK 579
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ S +RL + +G K G L+++ RG D E+ + RKSVSAEVN+GIRF N +
Sbjct: 580 FVKDIRQTSKERLISALGPKTGEKLWEYSRGIDRTEVGEQPIRKSVSAEVNWGIRFVNQE 639
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
E E F++ L+ E+E+RL +KGK +T+K+M R+ +AP + K LGHG CD KS S
Sbjct: 640 EAEEFVRSLSQELERRLLSEGVKGKHLTMKIMRRATDAPLDPPKHLGHGKCDTFNKSVS- 698
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
F + S E I KE + I
Sbjct: 699 -----------FGVATNSGEV-------------------------------IGKEAVAI 716
Query: 2182 VNKLKVDPVELRGIGIQVSKLE 2203
+ K P +LRG+GIQ++KLE
Sbjct: 717 LRSYKFSPGDLRGLGIQMTKLE 738
Score = 149 bits (375), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 127/483 (26%), Positives = 208/483 (43%), Gaps = 129/483 (26%)
Query: 1321 YMEAKKRKLEEQ-FELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALM 1379
Y + K KL+ + +L ++ + IF+GV I+V GYT+ PS+ +L ++
Sbjct: 42 YFQNKNIKLQNRDAQLRSSPKDKPQIFKGVVIYVLGYTQ-----------PSSSDLHDIL 90
Query: 1380 MLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY 1437
+ HG + Y +T THII S++P K +L +++KP W++DS++AG++L +
Sbjct: 91 VQHGAGWLQYLGGKTMATHIICSSIPPKKAAELA-NYRVVKPAWVLDSVAAGRMLS---W 146
Query: 1438 LLYTGTDAKPLTKLLQ----------------KSYFENTEAPCCSKSLVETSSHTS---- 1477
Y D P + ++ + Y E TE + L + SS
Sbjct: 147 TEYRVIDEGPKQRTIKFDAGKMLSSQPRQQTPQGYREQTENSFYTSQLKKFSSPAQPKTP 206
Query: 1478 -----TVSDSVDNTEE------------SKSEAVNSEE----SKSEAANPIESKQTVKTK 1516
V+D +++ E+ SKSE + E S + P
Sbjct: 207 SKIPPIVNDKIEDFEDDMSVDLLQVPPSSKSEPLALSEPDGASDEQLNTPPYRAPLEAAP 266
Query: 1517 ESKLETVNISAP--------------KPQASSTKNA-------------SNEDFLGEFYN 1549
E++ T +I+ P KP S NA +N DFL ++Y+
Sbjct: 267 EARPTTPDIAEPENPEPEYPNEMHPVKPITSEEHNARLLADPKMRKASTANPDFLKQYYS 326
Query: 1550 KSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSP 1609
+SRLHHLST + K + L ++ + + P+
Sbjct: 327 ESRLHHLSTWKAQLKSRMQNL-----------------------AAEKGPAKKLAKRPAG 363
Query: 1610 SEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQR 1669
S IMH+D D FF +V ++ PE +D+P VAHG G S++
Sbjct: 364 SRR--YIMHVDFDSFFCAVSLKKAPEYRDKPAVVAHGNGKGSEIAS-------------- 407
Query: 1670 TMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEA 1729
R++G+ NGM++ HAL+ CP+LKI+PYDF GY+E S YN I + +++
Sbjct: 408 ----CNYPARKFGVKNGMWMKHALELCPDLKILPYDFPGYEEASGQFYNAILGIGGVVQS 463
Query: 1730 VSL 1732
VS+
Sbjct: 464 VSI 466
>gi|22164048|dbj|BAC07274.1| MUS42 [Neurospora crassa]
Length = 1098
Score = 183 bits (464), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/322 (35%), Positives = 168/322 (52%), Gaps = 59/322 (18%)
Query: 1898 IVSAVSCDEMYVDCSQL-LQELSLTPL---------------QFASYLRETIAKETGCTC 1941
+V +VS DE +D + + + E + + Q AS LR+ I ++T C
Sbjct: 460 VVQSVSIDEALIDVTDIVMAEAGSSGIGISEGSIWREQEKVDQMASKLRDRIKEQTDCHV 519
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G+N L A++A +KAKP GQ+ + P+ DF+ + + DLPGV HS+ KL LG +
Sbjct: 520 SVGIGANILLAKVALRKAKPAGQYQIKPEEALDFLGELNVEDLPGVAHSIGAKLEELGIK 579
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ S +RL + +G K G L+++ RG D E+ + RKSVSAEVN+GIRF N +
Sbjct: 580 FVKDIRQTSKERLISALGPKTGEKLWEYSRGIDRTEVGEQPIRKSVSAEVNWGIRFVNQE 639
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
E E F++ L+ E+E+RL +KGK +T+K+M R+A+AP + K LGHG CD KS S
Sbjct: 640 EAEEFVRSLSQELERRLLSEGVKGKHLTMKIMRRAADAPLDPPKHLGHGKCDTFNKSVS- 698
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
F + S E I KE + I
Sbjct: 699 -----------FGVGTNSGEV-------------------------------IGKEAVAI 716
Query: 2182 VNKLKVDPVELRGIGIQVSKLE 2203
+ K P +LRG+GIQ++KLE
Sbjct: 717 LRSYKFSPGDLRGLGIQMTKLE 738
Score = 152 bits (384), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 126/483 (26%), Positives = 211/483 (43%), Gaps = 129/483 (26%)
Query: 1321 YMEAKKRKLEEQ-FELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALM 1379
Y + K KL+ + +L +++ + IF+G+ I+V GYT+ PS+ +L ++
Sbjct: 42 YFQNKNIKLQNRDAQLRSSAKDKPQIFKGLVIYVLGYTQ-----------PSSSDLHDIL 90
Query: 1380 MLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY 1437
+ HG + Y +T THII S++P K +L +++KP W+VDS++AG++L +Y
Sbjct: 91 VQHGAGWLQYLGGKTMATHIICSSIPPKKAAELA-NYRVVKPAWVVDSVAAGRMLSWTEY 149
Query: 1438 LLYTGTDAKPLTKLLQ----------------KSYFENTEAPCCSKSLVETSSHTS---- 1477
+ D P + ++ + Y E TE + L + SS
Sbjct: 150 RV---VDEGPKQRTIKFDAGKMLSSQPRQQTPQGYREQTENSFYTSQLKKFSSPAQPKTP 206
Query: 1478 -----TVSDSVDNTEE------------SKSEAVNSEE----SKSEAANPIESKQTVKTK 1516
V+D +++ E+ SKSE + E S ++ P
Sbjct: 207 SKIPPIVNDKIEDFEDDMSVDLLQVPPSSKSEPLALSEPDGASDEQSNTPPYRAPLEAAP 266
Query: 1517 ESKLETVNISAP--------------KPQASSTKNA-------------SNEDFLGEFYN 1549
E++ T +I+ P KP S NA +N DFL ++Y+
Sbjct: 267 EARPTTPDIAEPENPEPEKTNELHPAKPITSEEHNARLLADPKMRKASTANPDFLKQYYS 326
Query: 1550 KSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSP 1609
+SRLHHLST + K + L ++ + + P+
Sbjct: 327 ESRLHHLSTWKAQLKSRMQNL-----------------------AAEKGPAKKLAKRPAG 363
Query: 1610 SEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQR 1669
S IMH+D D FF +V ++ PE +D+P VAHG G S++
Sbjct: 364 SRR--YIMHVDFDSFFCAVSLKKAPEYRDKPAVVAHGNGKGSEIAS-------------- 407
Query: 1670 TMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEA 1729
R++G+ NGM++ HAL+ CP+LKI+PYDF GY+E S Y+ I + +++
Sbjct: 408 ----CNYPARKFGVKNGMWMKHALELCPDLKILPYDFPGYEEASRQFYDAILEIGGVVQS 463
Query: 1730 VSL 1732
VS+
Sbjct: 464 VSI 466
>gi|320164937|gb|EFW41836.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 1079
Score = 182 bits (463), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 119/385 (30%), Positives = 175/385 (45%), Gaps = 89/385 (23%)
Query: 1894 SESKIVSAVSCDEMYVDCSQLLQELSLT----------------------PLQFASY--- 1928
S + I+ AVSCDE Y+D ++L+Q ++ P+ AS+
Sbjct: 471 SYTTIIQAVSCDEAYIDITELVQREIVSSQSELPSGGDAQAAETDHSQPPPVHSASWTPS 530
Query: 1929 --------------LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISD 1974
+R+ IA TGC S G N L AR+ATK+AKP+GQF+L P +
Sbjct: 531 ATQIAASIAAVVSRIRQEIATRTGCPVSAGIAHNMLLARMATKRAKPSGQFYLAPHKGLE 590
Query: 1975 FMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGED 2034
FML + DLPGVG SL +L L +TC +L IS +LQ E G K G TL+ RG D
Sbjct: 591 FMLTQAVGDLPGVGWSLARRLAQLDIETCSELARISKDKLQAEFGKKIGETLFNFARGVD 650
Query: 2035 DKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMV 2094
++L R+SVS E+ +G+RF+ ++ F+ L+ E+E+R+ + + GK + + LMV
Sbjct: 651 MRQLKTHQARQSVSVEITWGVRFEEEAQVRVFVTTLSRELERRMAVLNVTGKSLHIHLMV 710
Query: 2095 RSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGV 2154
R + K+LGHGVCD +S T RSA+
Sbjct: 711 RKPGITK-VYKYLGHGVCDSYNRS------------TLLATPTRSADV------------ 745
Query: 2155 CDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSKLEHQSKTLAT--- 2211
I E + ++ LK P E RG+GIQ++KL Q +
Sbjct: 746 -------------------IFHETMALLADLKFPPCEYRGLGIQLTKLTGQDPPSVSKPQ 786
Query: 2212 ---IDTFFTNKGKPPDQLNNPRPGP 2233
I FF+ + + + P P
Sbjct: 787 SGAITRFFSARAPGAALVESTSPAP 811
Score = 121 bits (303), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 120/208 (57%), Gaps = 20/208 (9%)
Query: 1321 YMEAKKRKLEEQFEL--EANSDSR-GGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
YM KK KL++QFE E++S R + GV ++V+GYT P A ELK
Sbjct: 34 YMRIKKAKLDQQFEDGDESSSMPRLSSVLAGVRVYVDGYT-----------TPPAAELKH 82
Query: 1378 LMMLHGGIYHHYES-SRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKK 1436
L+ HGG Y HY S SR THI+A NLP TK+K+L +K+++PEWIVDSI+ G+LL K
Sbjct: 83 LLWAHGGTYEHYNSKSRVTHIVACNLPDTKLKQLT-NEKVMRPEWIVDSIAQGRLLPEDK 141
Query: 1437 YLLYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSEAVNS 1496
Y LY+G A L+Q N AP ++S T++ T+T + + ++ S A ++
Sbjct: 142 YRLYSGRVAT-QPALMQMLPIANKHAPHAARSFATTTTTTTTTA-LMGRAGQAPSLAADA 199
Query: 1497 EESKSEAANPIESKQTVKTKESKLETVN 1524
+E++S NP+ Q+ T S ETV+
Sbjct: 200 QEAQSMNVNPLPLDQSATT--SPPETVD 225
Score = 102 bits (255), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 106/227 (46%), Gaps = 28/227 (12%)
Query: 1532 ASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSL 1591
A+ T + F+ +Y SRLH LST + K V EL E A +
Sbjct: 300 ATMTTLGNPSGFMSRYYQTSRLHFLSTWAAEVKTLVAELLE--------TSAAKDSTGDA 351
Query: 1592 GITEDEDLEETFSDNPSPSEPEP---VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKG 1648
+T ++ + +F D + P P V+ H+DMDCFFVS + P L ++PV V H
Sbjct: 352 PMTVEQLMARSFRDKGAALPPIPGGKVLAHVDMDCFFVSASLLSRPHLVEQPVVVCHSSS 411
Query: 1649 NSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEG 1708
D+ + R G+ NGM +G A + C N+ VPY+FE
Sbjct: 412 T--------------DLASTSEIASCNYPARAKGVRNGMRLGDARQLCDNITCVPYEFEV 457
Query: 1709 YKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLS 1755
Y++V LY + S T I+AVS +E++++ + E +++E++ S
Sbjct: 458 YRDVMITLYKTLVSYTTIIQAVS--CDEAYID-ITELVQREIVSSQS 501
>gi|429854580|gb|ELA29584.1| DNA damage repair protein [Colletotrichum gloeosporioides Nara gc5]
Length = 1173
Score = 182 bits (462), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/322 (34%), Positives = 164/322 (50%), Gaps = 59/322 (18%)
Query: 1898 IVSAVSCDEMYVDCSQLL-----------QELSL-----TPLQFASYLRETIAKETGCTC 1941
+V +VS DE VD + ++ E S+ Q A LR I TGC
Sbjct: 498 VVQSVSIDEALVDITSIVLSSVGSEGAGVDEGSIWREQDKAEQIALDLRNKIKASTGCAV 557
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N LQA++A ++AKP GQF + P+ + + + I DLPGV +SL KL +G +
Sbjct: 558 SVGIGGNILQAKVALRRAKPAGQFLMKPEEMLEIIGEIEAKDLPGVAYSLGGKLEEIGVK 617
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++N+S +RL + +G K G L+++ RG D E+ RKSVSAEVN+GIRF N Q
Sbjct: 618 YVKDIRNVSKERLSSSLGPKTGERLWEYARGIDRAEVGGHPPRKSVSAEVNWGIRFINQQ 677
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
E E F+ L E+E+RL ++KGK T+K+M R+ +AP + +K LGHG CD +KS
Sbjct: 678 EAEEFVLNLCKELERRLLNEQVKGKQFTMKIMRRAQDAPLDPAKHLGHGKCDSFSKS--- 734
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
+ GV + A I KE + +
Sbjct: 735 ----------------------------VMFGVATH------------NAETIAKEAVSV 754
Query: 2182 VNKLKVDPVELRGIGIQVSKLE 2203
+ + P +LRG+G+Q++KLE
Sbjct: 755 LRSYRFSPGDLRGLGVQLTKLE 776
Score = 108 bits (270), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 124/257 (48%), Gaps = 62/257 (24%)
Query: 1525 ISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNEL-REKHDGVFRGIEA 1583
+S PK SST +N DFL +FY++SRLHHLST + K + +L +EK +
Sbjct: 345 LSDPKMWKSST---ANPDFLKQFYSESRLHHLSTWKAELKSKMQKLAKEKGTSTIKRKAG 401
Query: 1584 IRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
R++ IMH+D D FF +V ++ +PE D+P V
Sbjct: 402 SRRY----------------------------IMHVDFDSFFCAVSLKRNPEYVDKPTVV 433
Query: 1644 AHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVP 1703
AH G++S++ + N + R++G+ NGM++ AL CP++K++P
Sbjct: 434 AHSSGSASEIA---------------SCNYVA---RKFGVKNGMWMRRALDLCPDIKVLP 475
Query: 1704 YDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQ-----Q 1758
YDF Y+E S Y I + +++VS+ +E+ + DI VL + + +
Sbjct: 476 YDFPAYEEASRHFYEAILDIGGVVQSVSI--DEALV-----DITSIVLSSVGSEGAGVDE 528
Query: 1759 SVLSREQNTTEPLAQDI 1775
+ REQ+ E +A D+
Sbjct: 529 GSIWREQDKAEQIALDL 545
Score = 59.3 bits (142), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G Y KK KL+ ++ A+S + IF+GV V GYT+ + + L
Sbjct: 38 GDYFRRKKIKLQNLDADMRASSSDKPQIFKGVVAHVTGYTQPPLHI-----------LHR 86
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHK 1435
++ HG + Y ++T THIIAS++P K +++KP W+ DSI AG+LL
Sbjct: 87 ELVQHGAGFLQYLDAKTMATHIIASSVPPKKSVDYS-RYRLVKPAWVTDSIRAGRLLPWS 145
Query: 1436 KY 1437
Y
Sbjct: 146 DY 147
Score = 48.1 bits (113), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 22/136 (16%)
Query: 1738 FLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPL------AQDIICADSHTLVRTPSPSP 1791
FL LPED+R+EV++D R++ N P A D + T ++ P+P P
Sbjct: 1025 FLAELPEDVRREVIEDHRRKRLAQKSGLNFNAPRKHLPAEASDFLPG-GQTKLQFPAPPP 1083
Query: 1792 ILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQ---PEPSDIEMFSEYLSNLV-E 1847
++ S + S+QE++ M+ W ++ P D+ MF +YL+ +V E
Sbjct: 1084 KVNFMGSAVK-----------SVQEIKDMIEAWHDGTRAEGPHQEDVVMFEKYLAKVVAE 1132
Query: 1848 ERHLNPIVILLRFLRR 1863
ER ++ L+ RR
Sbjct: 1133 ERDMHKASKLVHGWRR 1148
Score = 41.2 bits (95), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 1179 ISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
+S PK SST +N DFL +FY++SRLHHLST + K + +L
Sbjct: 345 LSDPKMWKSST---ANPDFLKQFYSESRLHHLSTWKAELKSKMQKL 387
>gi|85699994|gb|ABC74448.1| REV1 [Neurospora tetrasperma]
Length = 1342
Score = 182 bits (462), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 119/344 (34%), Positives = 175/344 (50%), Gaps = 62/344 (18%)
Query: 1898 IVSAVSCDEMYVDCSQL-LQELSLTPL---------------QFASYLRETIAKETGCTC 1941
+V +VS DE +D + + + E + + Q AS LR+ I ++T C
Sbjct: 460 VVQSVSIDEALIDVTDIVMAEAGSSGIGISEGSIWREQEKVDQMASKLRDRIKEQTDCHV 519
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
G G+N L A++A +KAKP GQ+ + P+ DF+ + + DLPGV HS+ KL LG +
Sbjct: 520 FVGIGANILLAKVALRKAKPAGQYQIKPEEALDFLGELNVEDLPGVAHSIGAKLEELGIK 579
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ S +RL + +G K G L+++ RG D E+ + RKSVSAEVN+GIRF N +
Sbjct: 580 FVKDIRQTSKERLISALGPKTGEKLWEYSRGIDRTEVGEQPIRKSVSAEVNWGIRFVNQE 639
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
E E F++ L+ E+E+RL +KGK +T+K+M R+ +AP + K LGHG CD KS S
Sbjct: 640 EAEEFVRSLSQELERRLLSEGVKGKHLTMKIMRRATDAPLDPPKHLGHGKCDTFNKSVS- 698
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
F + S E I KE + I
Sbjct: 699 -----------FGVATNSGEV-------------------------------IGKEAVAI 716
Query: 2182 VNKLKVDPVELRGIGIQVSKLE--HQSKTLATIDTFFTNKGKPP 2223
+ K P +LRG+GIQ++KLE S L I+ F+ G PP
Sbjct: 717 LRSYKFSPGDLRGLGIQMTKLEPLKPSAALEVIEEKFSF-GAPP 759
Score = 151 bits (382), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 126/483 (26%), Positives = 210/483 (43%), Gaps = 129/483 (26%)
Query: 1321 YMEAKKRKLEEQ-FELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALM 1379
Y + K KL+ + +L +++ + IF+GV I+V GYT+ PS+ +L ++
Sbjct: 42 YFQNKNIKLQNRDAQLRSSAKDKPQIFKGVVIYVLGYTQ-----------PSSSDLHDIL 90
Query: 1380 MLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY 1437
+ HG + Y +T THII S++P K +L +++KP W++DS++AG++L +Y
Sbjct: 91 VQHGAGWLQYLGGKTMATHIICSSIPPKKAAELA-NYRVVKPAWVLDSVAAGRMLSWTEY 149
Query: 1438 LLYTGTDAKPLTKLLQ----------------KSYFENTEAPCCSKSLVETSSHTS---- 1477
+ D P + ++ + Y E TE + L + SS
Sbjct: 150 RV---IDEGPKQRTIKFDAGKMLSSQPRQQTPQGYREQTENSFYTSQLKKFSSPAQPKTP 206
Query: 1478 -----TVSDSVDNTEE------------SKSEAVNSEE----SKSEAANPIESKQTVKTK 1516
V+D++ + E+ SKSE + E S + P
Sbjct: 207 SKIPPIVNDNIGDFEDDMSVDLLQVPPSSKSEPLALSEPDGASDEQLNTPPYRAPLEAAP 266
Query: 1517 ESKLETVNISAP--------------KPQASSTKNA-------------SNEDFLGEFYN 1549
E++ T +I+ P KP S NA +N DFL ++Y+
Sbjct: 267 EARPTTPDIAEPENPEPEKMNELHPAKPITSEEHNARLLADPKMRKASTANPDFLKQYYS 326
Query: 1550 KSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSP 1609
+SRLHHLST + K + L ++ + + P+
Sbjct: 327 ESRLHHLSTWKAQLKSRMQNL-----------------------AAEKGPAKKLAKRPAG 363
Query: 1610 SEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQR 1669
S IMH+D D FF +V ++ PE +D+P VAHG G S++
Sbjct: 364 S--RRYIMHVDFDSFFCAVSLKKAPEYRDKPAVVAHGNGKGSEIAS-------------- 407
Query: 1670 TMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEA 1729
R++G+ NGM++ HAL+ CP+LKI+PYDF GY+E S Y+ I + +++
Sbjct: 408 ----CNYPARKFGVKNGMWMKHALELCPDLKILPYDFPGYEEASRQFYDAILGIGGVVQS 463
Query: 1730 VSL 1732
VS+
Sbjct: 464 VSI 466
>gi|321447879|gb|EFX61225.1| hypothetical protein DAPPUDRAFT_274376 [Daphnia pulex]
Length = 230
Score = 182 bits (461), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/229 (42%), Positives = 136/229 (59%), Gaps = 32/229 (13%)
Query: 73 MERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVE 132
M +REI Y PGL+KI DEIL+N NK RDP+M+ I+I ++ N I + NGKGIP+
Sbjct: 1 MIQREIIYTPGLWKIVDEILINDVRNKDRDPEMDTIQIDIDPIKNVIKFYYNGKGIPIT- 59
Query: 133 HKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNG 192
++P+MIF LL N + D E+ VTGG N
Sbjct: 60 ------YIPSMIFDPLLPDFN-------------------------FYDGEETVTGGLNY 88
Query: 193 YGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLT 252
YGAKL NIFS+ F +ET+ + FKQ W DNM+ +P ++ S ++TK TF+PDL
Sbjct: 89 YGAKLGNIFSTAFELETASKDLCLRFKQTWTDNMTLAETPVVEPYSGPNYTKNTFSPDLD 148
Query: 253 KFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKL 301
KF+M SL+KD + L++RRA++ A ST V V+LN + LP+ NF++Y+ L
Sbjct: 149 KFRMDSLNKDTIALLSRRAFEVATSTPGVNVYLNDKPLPINNFKEYLDL 197
>gi|121699699|ref|XP_001268115.1| DNA damage repair protein Mus42, putative [Aspergillus clavatus NRRL
1]
gi|119396257|gb|EAW06689.1| DNA damage repair protein Mus42, putative [Aspergillus clavatus NRRL
1]
Length = 1153
Score = 182 bits (461), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 118/322 (36%), Positives = 166/322 (51%), Gaps = 59/322 (18%)
Query: 1898 IVSAVSCDEMYVD-CSQLLQ----------ELSLTPLQ-----FASYLRETIAKETGCTC 1941
+V +VS DE VD +Q L+ E S+ Q A +LR+++ TGC
Sbjct: 462 VVQSVSIDEALVDITTQCLEAGGSDGRGISEGSIYREQARADEIAQHLRDSVKVATGCDV 521
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N L A++A +KAKP GQF L P+ I DF+ N+ + +LPGVG+SL KL L +
Sbjct: 522 SVGIGGNILLAKVALRKAKPAGQFQLKPEAILDFIGNLTVQELPGVGYSLGAKLEELKVK 581
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++++S +RL +G K G L+ + RG D E+ E RKSVSAEVN+GIRF N
Sbjct: 582 FVKDIRDLSRERLITSLGPKTGAKLWDYSRGIDCTEVGNEVIRKSVSAEVNWGIRFVNQT 641
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ E F++ L E+ +RL E +KGK +TLK+M R+A+AP E K LGHG CD KS L
Sbjct: 642 QAEDFVRSLCEELHRRLVENLVKGKHLTLKVMRRAADAPLEPVKHLGHGKCDVFNKSVVL 701
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
I + LG KE + +
Sbjct: 702 GIAT-------------------NDQEILG------------------------KEAVSM 718
Query: 2182 VNKLKVDPVELRGIGIQVSKLE 2203
+ P +LRG+G+Q++KLE
Sbjct: 719 LRSFAFSPGDLRGLGVQMTKLE 740
Score = 142 bits (357), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 135/532 (25%), Positives = 216/532 (40%), Gaps = 135/532 (25%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G YM KK KL+ E+ ++S R IF+GV VNGYT+ PS ++L
Sbjct: 38 GDYMRRKKLKLQNLDAEIRSSSPDRPAIFRGVVAHVNGYTQ-----------PSLQDLHR 86
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPE-------------W- 1421
L++ HGG + Y +T THIIAS+L K ++ K +I+KP W
Sbjct: 87 LIVSHGGGFLQYLDGKTAATHIIASSLTLKKREEFK-RYRIVKPAWVVESVKAGRLLPWD 145
Query: 1422 ---IVDSISAGKLL--DHKKYLLYTGTDAKPLTKLLQKSYF----ENTEAP--CCSKSLV 1470
+VD A K++ D+ ++L T T S++ + EAP + +
Sbjct: 146 LFRVVDEGHAQKIINFDNGRFLSQTNTQPSGYRDQTDSSWYTSRLKGVEAPGKTIESNEI 205
Query: 1471 ETSSHTSTVSDSVD--NTEESKSEA---VNSEESKSEAANPIESKQTVKTKESKLETVNI 1525
+ + + V+D T+ E +S + + A P+ + L N
Sbjct: 206 QPDNIPTPVADDAPKVGTQSDYGEFPSFASSAQDVNRATTPVSRPTGSPEPSTPLNETNG 265
Query: 1526 SA----------------PKPQASSTKNAS----------------------NEDFLGEF 1547
+A P + S+T A N +F+ ++
Sbjct: 266 AAGDGDSPKSPNVITPDRPSVRQSTTPKAEMTSEEYNAQLLADPRMRNSGVVNPEFIQQY 325
Query: 1548 YNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNP 1607
Y +SRLHHLST WK L +E
Sbjct: 326 YRESRLHHLST----------------------------WKAELKAQLQSTTKEKLQSQV 357
Query: 1608 SPSEPEP----VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEF 1663
+P P ++H+D DCFF +V I HPEL+D+PVA+AHG G+ S++
Sbjct: 358 GRKKPVPGARRYVLHVDFDCFFAAVSILKHPELKDQPVAIAHGAGSGSEIAS-------- 409
Query: 1664 DIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASL 1723
R G+ NGM++ AL+ CP LK++PYDF Y+E S Y + SL
Sbjct: 410 ----------CNYPARARGIKNGMWMKGALQACPELKVLPYDFPAYEEASQKFYGAVLSL 459
Query: 1724 TLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
+++VS+ +E+ ++ + + D + + REQ + +AQ +
Sbjct: 460 DGVVQSVSI--DEALVDITTQCLEAGGSDGRGISEGSIYREQARADEIAQHL 509
>gi|310790778|gb|EFQ26311.1| impB/mucB/samB family protein [Glomerella graminicola M1.001]
Length = 1152
Score = 181 bits (460), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 112/322 (34%), Positives = 165/322 (51%), Gaps = 59/322 (18%)
Query: 1898 IVSAVSCDEMYVDCSQL-----------LQELSL-----TPLQFASYLRETIAKETGCTC 1941
+V +VS DE VD + + L E S+ Q A LR I + TGC
Sbjct: 459 VVQSVSIDEALVDITSIIISTAGANGTGLDEGSMWREQEEAEQIALQLRNRIKESTGCAV 518
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G GSN L A++A ++AKP GQF + P+ + D + + + DLPGV +SL KL +G +
Sbjct: 519 SVGIGSNILLAKVALRRAKPAGQFQIKPEQVLDIIGELEVKDLPGVAYSLSGKLEEIGVK 578
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ ++ +RL + +G K G L+++ RG D E+ + RKSVSAEVN+GIRF N Q
Sbjct: 579 FVKDIRQVTKERLSSTLGPKTGEKLWEYARGIDRTEVGEQPPRKSVSAEVNWGIRFINQQ 638
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
E E F+ L E+E+RL ++KGK T+K+M R+ +AP + K LGHG CD +KS
Sbjct: 639 EAEEFILNLCKELERRLLSEQVKGKQFTMKIMRRALDAPLDPPKHLGHGKCDSFSKS--- 695
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
+ GV + A I KE + I
Sbjct: 696 ----------------------------ILFGVATH------------DADTIAKEAVSI 715
Query: 2182 VNKLKVDPVELRGIGIQVSKLE 2203
+ + P +LRG+G+Q++KLE
Sbjct: 716 LRSYRFTPGDLRGLGVQLTKLE 737
Score = 135 bits (339), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 138/531 (25%), Positives = 222/531 (41%), Gaps = 142/531 (26%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G Y KK KL+ E+ + S + IF+GV V GYT+ P L
Sbjct: 38 GDYFRRKKIKLQNLDAEMRSASPDKPQIFKGVVAHVMGYTQ-----------PPLHILHR 86
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL--- 1432
+++ HG + Y S+T THIIAS++P K +++KP W+ DSI AG+LL
Sbjct: 87 MLVQHGAGFLQYLDSKTMATHIIASSVPPKKSVDYS-RYRLVKPAWVTDSIEAGRLLPWS 145
Query: 1433 -------DHKKYLLYTGTDAKPL---TKLLQKSYFENTEA-------------------- 1462
D + ++ D+K + T ++ Y E T+A
Sbjct: 146 DYRVNNNDGPRQKVFKLDDSKTVSQTTPQAKRGYREQTDASFYTSQFKAPAGSPATPSLG 205
Query: 1463 ------------PCCSKSLVETSSHTSTV-----SDSVDN--------------TEESKS 1491
P S + SH++ D V+ EE K
Sbjct: 206 QFAERAESPLARPQARHSYSPSFSHSAKPLPLKEKDDVEEFDDMEIDELVVDILPEEDKD 265
Query: 1492 EAVNSEESKSEAANPI---ESKQTVKTKE----SKLETVNISAPKPQASSTKNASNEDFL 1544
V EE +++ A P+ E KQ K+ E + V +S PK SST +N DFL
Sbjct: 266 SRV--EELEAKIAPPVLEKEPKQETKSPEKMTSEEHNAVLLSDPKIWKSST---ANPDFL 320
Query: 1545 GEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIE---AIRKWKTSLGITEDEDLEE 1601
+FY++SRLHHLST + K + L ++ + I+ R++
Sbjct: 321 KQFYSESRLHHLSTWKAELKSKMQNLAKEKGASPKAIKRKPGSRRY-------------- 366
Query: 1602 TFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQA 1661
I+H+D D FF +V ++ P+ D+P VAH G +S++
Sbjct: 367 --------------IIHVDFDSFFCAVSLKKKPQYVDKPAVVAHSSGTASEI-------- 404
Query: 1662 EFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIA 1721
+ N + R++G+ NGM++ AL+ CP++K++PYDF Y+E S Y I
Sbjct: 405 -------ASCNYVA---RKFGIKNGMWMKRALELCPDIKVLPYDFPAYEEASRLFYESIL 454
Query: 1722 SLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLA 1772
L +++VS+ +E+ ++ I + + + REQ E +A
Sbjct: 455 ELGGVVQSVSI--DEALVDITSIIISTAGANGTGLDEGSMWREQEEAEQIA 503
Score = 44.3 bits (103), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 70/140 (50%), Gaps = 27/140 (19%)
Query: 1735 NESFLNALPEDIRQEVLDD-----LSRQQSVL----SREQNTTEPLAQDIICADSHTLVR 1785
++ FL LPED+R+E+++D L+++ +L +R Q + L + T ++
Sbjct: 985 DQEFLAELPEDVRKEIIEDHRKKRLAKRSGLLFNAPARRQQAGD-LGDSLPVG--QTKLQ 1041
Query: 1786 TPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQ---PEPSDIEMFSEYL 1842
P+P P ++ S + S+QE++ ML W ++ P D+ +F +YL
Sbjct: 1042 FPAPPPKVNFMGSAVK-----------SVQEVKDMLEAWHDGTRLDGPHQDDVLVFKKYL 1090
Query: 1843 SNLV-EERHLNPIVILLRFL 1861
S +V EER ++ L+ +L
Sbjct: 1091 SKVVSEERDMHKASKLVHWL 1110
Score = 43.5 bits (101), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 1160 RKEEESTQTVQVELREGVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQ 1219
++E +S + + E V +S PK SST +N DFL +FY++SRLHHLST + K
Sbjct: 285 KQETKSPEKMTSEEHNAVLLSDPKIWKSST---ANPDFLKQFYSESRLHHLSTWKAELKS 341
Query: 1220 YVNQL 1224
+ L
Sbjct: 342 KMQNL 346
>gi|321251489|ref|XP_003192083.1| hypothetical protein CGB_B2050C [Cryptococcus gattii WM276]
gi|317458551|gb|ADV20296.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 1245
Score = 181 bits (460), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 114/332 (34%), Positives = 169/332 (50%), Gaps = 56/332 (16%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTP---------------LQFASYLRETIAKET-GCTCS 1942
+ AVS DE +D + + + P ++ A +R+ + + T GC S
Sbjct: 544 LQAVSVDEALIDVTSHVAARAALPQDAAIGEKGKERDPAVELAEKIRDDVREVTKGCEVS 603
Query: 1943 TGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQT 2002
G N L A+LAT+ AKP G +HL + I F+ + + D P VG+S K+ + T
Sbjct: 604 IGIAHNILLAKLATRHAKPAGVYHLISEAIPSFIHRLSVEDFPSVGYSTKSKIEAAFKTT 663
Query: 2003 -CGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
G+L NIS R ++ +G K G ++ + RG D ++L + RKSVSAE+NYGIRFQ
Sbjct: 664 KAGELLNISKGRWKSVLGEKTGEMMWGYLRGIDSRKLEGDKVRKSVSAEMNYGIRFQTQG 723
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ E +++ LA EV KR++ V +KG+ ITLKL+ R +AP E KFLGHG C+ +SS L
Sbjct: 724 QAEQYIRDLAAEVSKRMKNVGVKGRQITLKLLKRHPDAPIEPPKFLGHGWCETYNRSSLL 783
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
P S P + K LG ++ Q+L+
Sbjct: 784 PT---------------SGGGPTDDPKILG-----------------TEGVQLLR----- 806
Query: 2182 VNKLKVDPVELRGIGIQVSKLEHQSKTLATID 2213
L +DPVELRG+GIQV+KL+ + +D
Sbjct: 807 --TLNIDPVELRGVGIQVTKLDTEVTERGQVD 836
Score = 94.0 bits (232), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 122/497 (24%), Positives = 201/497 (40%), Gaps = 109/497 (21%)
Query: 1319 GGYMEAKKRKLEEQ---FELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEEL 1375
G YM K+ K++ Q + A+S + IF G++ +NG T+ PS E+L
Sbjct: 112 GDYMRKKEIKVQAQNASIAVSASSKTLPQIFTGLSFHINGNTQ-----------PSMEQL 160
Query: 1376 KALMMLHGGIYHHYESSRTT--HIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLD 1433
+ L++ GG + ++T +IIA L K ++ K K++K W+V+S KLLD
Sbjct: 161 RKLLLQRGGTVYPVLRNKTMVDYIIAPVLTLKKHEEFK-RYKVVKEGWVVESCQQDKLLD 219
Query: 1434 HKKYLLYT-GTDAKPLTKLLQKSYFENTEAPC----CSKSLVETSSHTSTVSDSVDNTEE 1488
+K+ L G A+ TK L+ + + +A ++ L T V+ ++TE
Sbjct: 220 WRKWRLQPDGGGAEAGTKSLESFFAQKAKAKQDLGEAAEELSIDYKDTKLVAPVDEDTEY 279
Query: 1489 SK-SEAVNSEESK------SEAANPIESKQT----------------------VKTKESK 1519
S S+A+N K P + ++ E
Sbjct: 280 STPSDAINVTPKKPIPMQLQRLLTPRSQRHAPIPISPGQPPPSPASPAPVSPKIQKPEGA 339
Query: 1520 LETV-----NISAPKPQASSTKNASNEDFLG-------EFYNKSRLHHLSTMGSMFKQYV 1567
E N A K S A N LG ++Y SRLHHLST + K V
Sbjct: 340 WEHYYKTESNEHAAKALQSDAWRAQNTAELGNAGGFIDDYYQNSRLHHLSTWKAELKVLV 399
Query: 1568 NELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEP---------VIMH 1618
+ +++ + E + + G + + + + PS P P VI H
Sbjct: 400 RDAQKRSEEALTNAEVK---ELAEGAEQSGQGTHSLAKSVLPSIPLPAVPSGSANRVIFH 456
Query: 1619 IDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNT 1678
+D D FFVS G+ P L+ +P V H G G +E +
Sbjct: 457 VDFDAFFVSCGLATRPYLKGKPTVVCHSSGR------GAGSTSE--------IASCSYEA 502
Query: 1679 REYGLGNGMFVGHALKKC-PNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNES 1737
RE G+ NGM +G A + P+L+ +P+ S Y ++ + ++AVS+ +E+
Sbjct: 503 REKGVRNGMSLGRARQLVGPDLRTMPF--------SLAFYTVLMAYADELQAVSV--DEA 552
Query: 1738 FLN---------ALPED 1745
++ ALP+D
Sbjct: 553 LIDVTSHVAARAALPQD 569
>gi|380495087|emb|CCF32664.1| impB/mucB/samB family protein [Colletotrichum higginsianum]
Length = 1154
Score = 181 bits (460), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 108/323 (33%), Positives = 164/323 (50%), Gaps = 60/323 (18%)
Query: 1898 IVSAVSCDEMYVDCSQLLQELSLT-----------------PLQFASYLRETIAKETGCT 1940
+V +VS DE VD + ++ +++ Q A LR I + TGC
Sbjct: 458 VVQSVSIDEALVDITSIVPSTAISDSTRVDEDSSVSMEQERAEQIALALRNKIKESTGCA 517
Query: 1941 CSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGA 2000
S G G N L A++A ++AKP GQF + P+ + D + + + DLPGV +SL KL +G
Sbjct: 518 VSVGIGGNILLAKVALRRAKPAGQFQIRPEQVLDVIGELEVKDLPGVAYSLSGKLEEIGV 577
Query: 2001 QTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNN 2060
+ D++ +S +RL + +G K G L+++ RG D E+ + RKSVSAEVN+GIRF N
Sbjct: 578 KFVKDIRQVSKERLSSSLGPKTGEKLWEYARGIDRAEVGEQPPRKSVSAEVNWGIRFINQ 637
Query: 2061 QEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSS 2120
QE E F+ L E+E+RL ++KGK T+K+M R+ +AP + K LGHG CD +KS
Sbjct: 638 QEAEEFILNLCKELERRLLNEQVKGKQFTMKIMRRALDAPLDPPKHLGHGKCDSFSKS-- 695
Query: 2121 LPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLF 2180
+ GV + A I KE +
Sbjct: 696 -----------------------------ILFGVATH------------NAETIAKEAVS 714
Query: 2181 IVNKLKVDPVELRGIGIQVSKLE 2203
I+ + P +LRG+G+Q+++LE
Sbjct: 715 ILRSYRFTPGDLRGLGVQLTRLE 737
Score = 132 bits (332), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 132/525 (25%), Positives = 224/525 (42%), Gaps = 130/525 (24%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G Y KK KL+ ++ A S + IF+GV V GYT+ P L
Sbjct: 38 GDYFRRKKIKLQNLDADIRAASTDKPQIFKGVVAHVMGYTQ-----------PPLHVLHR 86
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL--- 1432
++ HG + Y S+T THIIAS++P K +I+KP W+ DS+ AG+LL
Sbjct: 87 ELVQHGAGFLQYLDSKTMATHIIASSIPPKKSVDYS-KYRIVKPAWVTDSVEAGRLLPWS 145
Query: 1433 -------DHKKYLLYTGTDAKPL---TKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDS 1482
D + ++ D++ L T ++ Y E T+A + T+ +T S S
Sbjct: 146 DYRVNNNDGPRQKVFKLNDSRTLSQTTPQAKRGYREQTDASFYTSQFKATAGSPATPSLS 205
Query: 1483 VDNTEESKSEAVNSEESKSEAAN--------PIESKQTV--------------------- 1513
E ++S S S + + P++ K V
Sbjct: 206 -RFAERAESPLARSHARDSNSPSIPQFVKGPPLKGKDDVEEFDDMEVDELMVDFVPEEDK 264
Query: 1514 --KTKESKLETVNISAPKPQ---------ASSTKNA-------------SNEDFLGEFYN 1549
K ++S ++++ + KP+ S NA +N DFL +FY+
Sbjct: 265 VPKIEKSDVQSIPTAVEKPKQGTKMPESMTSEEHNAALLSDPKIWKSSTANPDFLKQFYS 324
Query: 1550 KSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSP 1609
+SRLHHLST + K + L ++ + I K ++G
Sbjct: 325 ESRLHHLSTWKAELKSRMQNLAKEKGASPKTI------KRNVGSRR-------------- 364
Query: 1610 SEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQR 1669
I+H+D D FF +V ++ P+ D+P VAH G +S++
Sbjct: 365 -----YIIHVDFDSFFCAVSLKKTPQYVDKPTVVAHSSGTASEI---------------A 404
Query: 1670 TMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEA 1729
+ N + R++G+ NGM++ AL+ CP++K++PYDF Y++ S Y I L +++
Sbjct: 405 SCNYVA---RKFGVKNGMWMKRALELCPDIKVLPYDFPAYEDASRLFYESILELGGVVQS 461
Query: 1730 VSLYTNESFLNALPEDIRQEVLDDLSR--QQSVLSREQNTTEPLA 1772
VS+ +E+ ++ + + + D +R + S +S EQ E +A
Sbjct: 462 VSI--DEALVD-ITSIVPSTAISDSTRVDEDSSVSMEQERAEQIA 503
Score = 50.1 bits (118), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 26/140 (18%)
Query: 1735 NESFLNALPEDIRQEVLDD-----LSRQQSVL----SREQNTTEPLAQDIICADSHTLVR 1785
++ FL LPED+R+E+++D L+++ +L SR Q+ L + + T ++
Sbjct: 986 DQEFLAELPEDVRKEIIEDHRKKRLAKRSGLLFNAPSRRQHGGGELGEPLPAG--QTKLQ 1043
Query: 1786 TPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQ---PEPSDIEMFSEYL 1842
P+P P +D S + S+QE++ ML W ++ P D+ +F +YL
Sbjct: 1044 FPAPPPRIDFMGSAVK-----------SVQEIKDMLEAWHDGTRYDGPHREDVVVFEKYL 1092
Query: 1843 SNLV-EERHLNPIVILLRFL 1861
+ +V EER + L+++L
Sbjct: 1093 AKVVLEERDMRKAAKLVQWL 1112
>gi|258574661|ref|XP_002541512.1| MUS42 protein [Uncinocarpus reesii 1704]
gi|237901778|gb|EEP76179.1| MUS42 protein [Uncinocarpus reesii 1704]
Length = 1135
Score = 181 bits (459), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 112/322 (34%), Positives = 163/322 (50%), Gaps = 59/322 (18%)
Query: 1898 IVSAVSCDEMYVDCSQL-----------LQELSLTPLQ-----FASYLRETIAKETGCTC 1941
IV +VS DE +D ++L + E S+ Q A LR++I ++TGC
Sbjct: 446 IVQSVSIDEALIDITRLCLDAASSDGKGISESSIWREQTKADEIAQGLRDSIKRKTGCDV 505
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N LQA+LA +KAKP GQF L P + DF+ + LPGV +SL KL LG +
Sbjct: 506 SVGIGGNILQAKLALRKAKPAGQFQLKPDAVLDFIGEFTVQQLPGVAYSLGGKLEELGVK 565
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ +S +RL +G K G L+ + RG D+ E+ RKSVSAE+N+GIRF
Sbjct: 566 YVKDIRELSKERLIQSLGPKTGAKLWDYARGIDNAEVGDVAPRKSVSAEINWGIRFVTQA 625
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ E F++ L E+ +RL E +KGK +T+++M R+ +AP E K LGHG CD KS L
Sbjct: 626 QAEEFVQSLCDELHRRLVENGVKGKQLTMRIMRRALDAPLEPPKHLGHGKCDTFNKSIML 685
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
+ AS+ LG +E + +
Sbjct: 686 GVAT-------------------NASESLG------------------------REAISV 702
Query: 2182 VNKLKVDPVELRGIGIQVSKLE 2203
+ P +LRG+G+Q++KLE
Sbjct: 703 LRGFNFSPGDLRGLGVQMTKLE 724
Score = 155 bits (392), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 136/521 (26%), Positives = 232/521 (44%), Gaps = 129/521 (24%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G Y KK KL+ E+ ++S + IF+GV VNGYT+ PS +L
Sbjct: 38 GDYFRRKKLKLQNLDAEIRSSSPNNPPIFRGVVAHVNGYTQ-----------PSLSDLHR 86
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHK 1435
L++ HGG + Y +T THIIAS+L K ++ + +++KP W+V+SI++G+LL
Sbjct: 87 LIVSHGGGFLQYLDGKTAATHIIASSLTPKKREEFR-NYRVVKPAWVVESINSGRLLPWD 145
Query: 1436 KYLLYTGTDAKPL------------------------------TKLLQKSYFENTEAPCC 1465
+ + + ++ + ++L+Q+ NT P
Sbjct: 146 SFRVVSEAASQKVLQFHQDGRFTSQSRSQSSSYRDQMETSWYGSRLIQQGVDANTHEPNA 205
Query: 1466 SKSL-VETSSHTSTVSDSVDNTEESKSEAVNSEESKSE-AANPIESKQTVKTKESKLETV 1523
+ + +T+ +S++ D+ E K V + +E P + Q + +E + ET+
Sbjct: 206 APTPEPKTAEEGDDLSNTADSVNEDKLYQVTDGSTLAEDTVIPDDFGQRTR-QEPEPETI 264
Query: 1524 N------------------------ISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTM 1559
+ +SAP + SS +N DF+ ++Y +SRLHHLST
Sbjct: 265 HDESRQQKSESRKEPTTSEEYNAQLLSAPHLRNSSV---ANPDFIKQYYRESRLHHLSTW 321
Query: 1560 GSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHI 1619
+ K + E + R KT++ P I+H+
Sbjct: 322 KAELKAKLQE------ATLARASSRRTVKTNV---------------PGARR---YILHV 357
Query: 1620 DMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTR 1679
D D FF +V +R HPEL D+PVA+AHG G S++ R
Sbjct: 358 DFDSFFAAVSLRKHPELVDKPVAIAHGTGGGSEIAS------------------CNYPAR 399
Query: 1680 EYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFL 1739
+G+ NGM++ A++ CP+LK++PYD+ GY++ S Y I + +++VS+ +E+ +
Sbjct: 400 AFGIKNGMWMQGAMQMCPDLKVLPYDYAGYEDASRRFYEAILDIDGIVQSVSI--DEALI 457
Query: 1740 NALPEDIRQEVLDDLSR-----QQSVLSREQNTTEPLAQDI 1775
DI + LD S +S + REQ + +AQ +
Sbjct: 458 -----DITRLCLDAASSDGKGISESSIWREQTKADEIAQGL 493
>gi|414086091|ref|YP_006986281.1| DNA topoisomerase II large subunit [Cronobacter phage
vB_CsaM_GAP161]
gi|378566416|gb|AFC22112.1| DNA topoisomerase II large subunit [Cronobacter phage
vB_CsaM_GAP161]
Length = 631
Score = 181 bits (459), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 175/665 (26%), Positives = 267/665 (40%), Gaps = 157/665 (23%)
Query: 11 DVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRET 70
D + N P + PA V++ + S +HI RP+ Y+GSV ++M
Sbjct: 4 DFLMDDNEPQKAPEAPAKGAKVDESFCL-SDRDHIRKRPNMYVGSVNKEAHERFIMG--- 59
Query: 71 NHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPV 130
+ R++ YV GL KI +EIL N+ D R KI V + N +++ +NG+GIP
Sbjct: 60 ---QFRKVEYVEGLVKIINEILDNSIDEAIRTDFKYANKIEVKIDHNLVTISDNGRGIP- 115
Query: 131 VEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYN-DEEDKVTGG 189
+D +VP + + S N D+E++VT G
Sbjct: 116 -----------------------QDDVRTPEGKIVPKPVAAWTMAKSGSNFDDENRVTMG 152
Query: 190 RNGYGAKLCNIFSSKFVVETSCSEYKKSFKQV-WKDNMSKVTSPEIKSGSKDDFTKITFT 248
NG G+ L N +S+ F+ ETS + K + NM TSP +K+ T + FT
Sbjct: 153 MNGVGSFLTNCYSAIFIGETSNGKRKVTINCTDGAQNMDYRTSP-----TKEQGTTVKFT 207
Query: 249 PDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDE 308
PD + F + +D++ ++I R A + VK NG+ LP K F Y +Y D+
Sbjct: 208 PDFSIFGVDGIDEETKEVIKDRLMALAVAFPAVKFTYNGDILPNK-FAMYGAMYGDKT-- 264
Query: 309 DGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVV 368
N + +A ++ GF+Q SFVN + T GG HVD ++D I ++ ++
Sbjct: 265 --------ITQTNNKISFILASTEDGFKQKSFVNGLDTKNGGVHVDTMIDGIYSELEPMI 316
Query: 369 KK-------KNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNH 421
KK K + C +++F + FN
Sbjct: 317 KKTHAIEIPKARVKECLTLVVFLHNFN--------------------------------- 343
Query: 422 IWIFINCLIVNPTFDSQTKENMTLQKGSFGS------------------TCVPKLEDA-- 461
P FDSQTKE +T G F + P +E A
Sbjct: 344 ----------APAFDSQTKEKLTNTAGEFNNHAGLNYKKIAKQIMDTSEIITPIIESALI 393
Query: 462 ---------------------------NDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVG 494
+ ++ TL LTEGDSA +
Sbjct: 394 RKQAAEAAAITKAKKKAKKAKVAKHVPASGIDTDGVETTLFLTEGDSAVGQFIE---CRN 450
Query: 495 RDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLM 554
+ G FPLRGK LN ++ ++L+N E++ L+ IL L D + Y +
Sbjct: 451 EETQGAFPLRGKPLNTWGMSNLEVLKNKELSELMAILNLHPG-------DSSEMTYDNIG 503
Query: 555 IMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEE 614
IM D D DG I L+I F WP L + TPII A ++E FYSL +F
Sbjct: 504 IMVDADVDGGDILTLLIAFFSR-WPELFEKKKIRYIRTPIIIAKVGKDEKWFYSLEDFAP 562
Query: 615 WKEET 619
++++
Sbjct: 563 FRDKA 567
>gi|189188686|ref|XP_001930682.1| DNA polymerase IV [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187972288|gb|EDU39787.1| DNA polymerase IV [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 878
Score = 181 bits (459), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 119/326 (36%), Positives = 168/326 (51%), Gaps = 59/326 (18%)
Query: 1894 SESKIVSAVSCDEMYVDCSQLL-----------QELSLTPLQ-----FASYLRETIAKET 1937
S +V +VS DE VD S L E S+ Q A LR+ + T
Sbjct: 478 STGGLVQSVSIDEALVDVSNLCISVGGSDGKAHSEGSVYREQAKANEIALNLRDEVRSRT 537
Query: 1938 GCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNS 1997
GC S G G N L A++ ++AKP GQ+ + P+ DF+ + + DLPGV S+ KL
Sbjct: 538 GCNVSVGIGGNILLAKVGLRRAKPAGQYQIKPEEALDFIGQLQVQDLPGVAWSIGGKLEG 597
Query: 1998 LGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRF 2057
LG + D++ ++ ++L +G K G LY++ RG D +E+ + RKSVSAEVN+G+RF
Sbjct: 598 LGIKLVKDIRELTKEKLIQTLGPKTGEKLYEYSRGIDRQEVGEQVVRKSVSAEVNWGVRF 657
Query: 2058 QNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITK 2117
+N ++ + F+ L GE++KRL + K+KGK T+K+M RS +AP + SK LGHG CD K
Sbjct: 658 ENQEQADEFIASLCGELQKRLRKEKVKGKQFTMKVMRRSPDAPLDPSKHLGHGKCDTHNK 717
Query: 2118 SSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKE 2177
S +LL GV T SS + + KE
Sbjct: 718 S---------------ILL----------------GVA---TNSSEV---------LTKE 734
Query: 2178 VLFIVNKLKVDPVELRGIGIQVSKLE 2203
L IV P ELRGIGIQ++KLE
Sbjct: 735 ALAIVRGFAFTPGELRGIGIQMTKLE 760
Score = 105 bits (261), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 108/250 (43%), Gaps = 63/250 (25%)
Query: 1501 SEAANPIESKQTVKTKESKLETVNISAPKPQASSTK---------------NASNEDFLG 1545
S A ES Q KE+ +I APK + + + + +FL
Sbjct: 284 SPPAQQTESGQVENPKEAMFSGSDIPAPKNRGLTAEEHNAILLRDPKIRKSTVVDPNFLE 343
Query: 1546 EFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSD 1605
++Y +SRLHHLST + K + L E++ S
Sbjct: 344 QYYRESRLHHLSTWKAELKSQMQALAS---------------------------EKSLSQ 376
Query: 1606 NPSPSEPEPV---IMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAE 1662
+ P I+H+D D FF +V ++ HPE +D+P VAHG+G+ S++
Sbjct: 377 DAKQRRPHGAGRYILHVDFDSFFAAVSLKKHPEYKDKPAVVAHGQGSGSEIAS------- 429
Query: 1663 FDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIAS 1722
R YG+ NGM++ A + CP+LKI+PYDF Y+E S Y++I S
Sbjct: 430 -----------CNYPARTYGVKNGMWMKRAQELCPDLKILPYDFPAYEETSRAFYDVILS 478
Query: 1723 LTLNIEAVSL 1732
+++VS+
Sbjct: 479 TGGLVQSVSI 488
Score = 73.9 bits (180), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 18/127 (14%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGG----IFQGVAIFVNGYTKHCMMLDAYYIVPSAEE 1374
GG+ + +RK + L+A+ S+ G IF+G+ VNGYT+ PS +
Sbjct: 35 GGFTDYFRRKKIKLQNLDADIRSQAGDKPQIFKGIVAHVNGYTQ-----------PSLND 83
Query: 1375 LKALMMLHGGIYHHYESSRTT--HIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL 1432
L L++ HGG + Y +TT HIIAS+L K + + +I+KP W+VDSI AGKLL
Sbjct: 84 LHTLIVQHGGGFMQYLDGKTTVTHIIASSLTPKKAVEFRR-YRIVKPAWVVDSIQAGKLL 142
Query: 1433 DHKKYLL 1439
+Y +
Sbjct: 143 QWNQYRI 149
>gi|85699992|gb|ABC74447.1| REV1 [Neurospora crassa]
Length = 1343
Score = 181 bits (459), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 167/322 (51%), Gaps = 59/322 (18%)
Query: 1898 IVSAVSCDEMYVDCSQL-LQELSLTPL---------------QFASYLRETIAKETGCTC 1941
+V +VS DE +D + + + E + + Q AS LR+ I ++T C
Sbjct: 460 VVQSVSIDEALIDVTDIVMAEAGSSGIGISEGSIWREQEKVDQMASKLRDRIKEQTDCHV 519
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G+N L A++A +KAKP GQ+ + P+ D + + + DLPGV HS+ KL LG +
Sbjct: 520 SVGIGANILLAKVALRKAKPAGQYQIKPEEALDLLGELNVEDLPGVAHSIGAKLEELGIK 579
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ S +RL + +G K G L+++ RG D E+ + RKSVSAEVN+GIRF N +
Sbjct: 580 FVKDIRQTSKERLISALGPKTGEKLWEYSRGIDRTEVGEQPIRKSVSAEVNWGIRFVNQE 639
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
E E F++ L+ E+E+RL +KGK +T+K+M R+A+AP + K LGHG CD KS S
Sbjct: 640 EAEEFVRSLSQELERRLLSEGVKGKHLTMKIMRRAADAPLDPPKHLGHGKCDTFNKSVS- 698
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
F + S E I KE + I
Sbjct: 699 -----------FGVGTNSGEV-------------------------------IGKEAVAI 716
Query: 2182 VNKLKVDPVELRGIGIQVSKLE 2203
+ K P +LRG+GIQ++KLE
Sbjct: 717 LRSYKFSPGDLRGLGIQMTKLE 738
Score = 154 bits (389), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 127/483 (26%), Positives = 210/483 (43%), Gaps = 129/483 (26%)
Query: 1321 YMEAKKRKLEEQ-FELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALM 1379
Y + K KL+ + +L +++ + IF+GV I+V GYT+ PS+ +L ++
Sbjct: 42 YFQNKNIKLQNRDAQLRSSAKDKPQIFRGVVIYVLGYTQ-----------PSSSDLHDIL 90
Query: 1380 MLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY 1437
+ HG + Y +T THII S++P K +L +++KP W+VDS++AG++L +Y
Sbjct: 91 VQHGAGWLQYLGGKTMATHIICSSIPPKKAAELA-NYRVVKPAWVVDSVAAGRMLSWTEY 149
Query: 1438 LLYTGTDAKPLTKLLQ----------------KSYFENTEAPCCSKSLVETSSHTS---- 1477
+ D P + ++ + Y E TE + L + SS
Sbjct: 150 RV---IDEGPKQRTIKFDAGKMLSSQPRRQTPQGYREQTENSFYTSQLQKFSSPAQPKTP 206
Query: 1478 -----TVSDSVDNTEE------------SKSEAVNSEE----SKSEAANPIESKQTVKTK 1516
V+D +++ E+ SKSE + E S + P
Sbjct: 207 SKIPPIVNDKIEDFEDDMSVDLLQVPPSSKSEPLALSEPDGASDEQCNTPPYQAPLEAAP 266
Query: 1517 ESKLETVNISAP--------------KPQASSTKNA-------------SNEDFLGEFYN 1549
E++ T +I+ P KP S NA +N DFL ++Y+
Sbjct: 267 EARPTTPDIAEPENPEPEKMNELHPAKPITSEEHNARLLADPKMRKASTANPDFLKQYYS 326
Query: 1550 KSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSP 1609
+SRLHHLST + K + L ++ + + P+
Sbjct: 327 ESRLHHLSTWKAQLKSRMQNL-----------------------AAEKGPAKKLAKRPAG 363
Query: 1610 SEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQR 1669
S IMH+D D FF +V ++ PE +D+P VAHG G S++
Sbjct: 364 SRR--YIMHVDFDSFFCAVSLKKAPEYRDKPAVVAHGNGKGSEIAS-------------- 407
Query: 1670 TMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEA 1729
R++G+ NGM++ HAL+ CP+LKI+PYDF GY+E S Y+ I + +++
Sbjct: 408 ----CNYPARKFGVKNGMWMKHALELCPDLKILPYDFPGYEEASRQFYDAILGIGGVVQS 463
Query: 1730 VSL 1732
VS+
Sbjct: 464 VSI 466
>gi|408386948|gb|AFU63957.1| hypothetical protein [Salmonella phage STML-198]
Length = 608
Score = 181 bits (458), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 176/623 (28%), Positives = 285/623 (45%), Gaps = 88/623 (14%)
Query: 32 VEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEI 91
+E Q S EH+L RP YIGSV ++ E + + YV G+ K+ DEI
Sbjct: 2 IENKIQMLSDKEHVLKRPGMYIGSVSNEFHERFVFG------EFKRVQYVAGVLKLIDEI 55
Query: 92 LVNACDNKQRDPKMNCIKITVNQETNT--ISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
+ N+ D R KI+VN +++T ++V +NG+GIP + V T
Sbjct: 56 IDNSVDEAIRTSFKFANKISVNIDSSTSKVTVEDNGRGIP-------QAMVTT------- 101
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
E +++ G P + N+ +E++ TGG+NG G+ L NIFS F T
Sbjct: 102 ------PEGEEIPG--PVAAWTKTKAGGNFGADEERKTGGQNGVGSSLTNIFSVMFKGTT 153
Query: 210 SCSEYKKSFK-QVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
S E + + DN+S + G TK+ F PD + F+M + D D++
Sbjct: 154 SDGENELTVSCSNNSDNVSWKSKKSSYKG-----TKVEFIPDFSHFEMNNFDDVYFDIML 208
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAI 328
R A ++ N +K+ NF+ Y K Y D + + I EN + +AI
Sbjct: 209 DRLQTLAVVYPKIEFKFNNKKVD-SNFKKYSKQY------DKNAIIIDEEN----YSLAI 257
Query: 329 APSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNK-------DLGCTIIM 381
S GF+Q+++VN+I T GG H+D V+D I ++I +K+K+K C ++
Sbjct: 258 GNSPDGFRQMTYVNNIHTKNGGSHIDYVIDEIANELIPAIKRKHKIEVNKARIKECFTVL 317
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
+F +N++ + + G + L ++ N I + I+ P ++
Sbjct: 318 MFIRDMSNLRFDSQTKERLTSPWGEIKSHLNLDAKKISNQ--IMKSDAILMPIIEAALAR 375
Query: 442 NM-------TLQKGSFGSTCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVG 494
+ T V K A + G + ++ TL LTEGDSA G +
Sbjct: 376 KLAAEKAAETKAAKKAAKAKVHKHIKAGEYGN-DKVETTLFLTEGDSA-----IGYLINT 429
Query: 495 RDK--YGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGR 552
RD+ +G +PLRGK++N + + L+N EI ++ I GL ED +L Y
Sbjct: 430 RDRALHGGYPLRGKVMNTWGMSAGEALKNKEIFDICAITGL------VIGEDYDSLNYKN 483
Query: 553 LMIMTDQDQDGS-HIKGLIINFIHHNWPTLL---RLPFLEEFITPIIKATKAREELSFYS 608
+ IMTD D DG+ I ++ F NWP L R+ F++ TP+I +K E+ +Y+
Sbjct: 484 IAIMTDADVDGTGSIYPSLLAFF-ANWPKLFEEGRIRFVK---TPVIIMSKGSEQKWYYN 539
Query: 609 LPEFEEWKEETTNWHTYKIKYYK 631
E+E K++ W K++Y K
Sbjct: 540 AAEYEAEKDKLAGW---KLRYIK 559
>gi|402225743|gb|EJU05804.1| DNA repair protein [Dacryopinax sp. DJM-731 SS1]
Length = 1311
Score = 181 bits (458), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 116/318 (36%), Positives = 161/318 (50%), Gaps = 52/318 (16%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPL------------QFASYLRETIAKETGCTCSTGFG 1946
V AVS DE +D S + P + A +R+ + K TGC S G
Sbjct: 691 VQAVSVDEALIDVSNAVARARFVPCVDGEGGPPNHVKELAEAIRDDVRKSTGCEISIGAS 750
Query: 1947 SNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNS-LGAQTCGD 2005
N L ARLAT++AKP G H+ P+ +S + ++ + DL GVG S+ +++S LG + G+
Sbjct: 751 HNILLARLATRRAKPAGSCHILPEDVSALLEDLDIKDLHGVGWSISERMDSNLGIKKVGE 810
Query: 2006 LQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMET 2065
L LQ G K G L+ RG D+ ++ QRKSVSAEVNYGIRF+ ++ E
Sbjct: 811 LAKQPKATLQKLFGPKMGEKLFNAARGIDNAQIESHKQRKSVSAEVNYGIRFETEEQAER 870
Query: 2066 FLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYE 2125
F+ L EV +RL+ V MKG+ +TLKLM R +AP EA KF+GHG+CD +KS+ PI
Sbjct: 871 FMHDLGREVSRRLKNVGMKGRFMTLKLMKRHHDAPLEAPKFMGHGICDTFSKSA--PITA 928
Query: 2126 RPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKL 2185
R T + +G +A ++LK F
Sbjct: 929 RGGTAT-------------DDPDIIGE-----------------EAWKLLKSFGF----- 953
Query: 2186 KVDPVELRGIGIQVSKLE 2203
D ELRG+GIQ+ KLE
Sbjct: 954 --DSKELRGLGIQIQKLE 969
Score = 102 bits (255), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 103/215 (47%), Gaps = 33/215 (15%)
Query: 1532 ASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYV---------NELREKHDGVFRGI- 1581
A+ +A +F+ FY +SRLHHLST + K+ V ++ RE DG +G+
Sbjct: 501 AAKHTSAKGAEFIEGFYKQSRLHHLSTWKAELKELVAKAQAKLEDDQSREHEDGPDKGVS 560
Query: 1582 ---EAIRKWKTSLGITEDEDLEETFSDNPSPSEPEP-VIMHIDMDCFFVSVGIRHHPELQ 1637
+ + K L D+ PE VIMH D D FFV+ + P L+
Sbjct: 561 MAGHVLPEGKARL-------------DSKGRVRPEDRVIMHCDFDSFFVAASLIDRPHLK 607
Query: 1638 DEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCP 1697
+PV V H +G ++ G + ++ R++G+ NGM +G A K CP
Sbjct: 608 GKPVVVCHSQGKAADAGTGRTGSSTSEVAS------ASYEARKFGIRNGMSLGQARKLCP 661
Query: 1698 NLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSL 1732
L+ +PY+FE YKE S Y ++ + +++AVS+
Sbjct: 662 ELETLPYEFEKYKEFSLKFYTILMTYADDVQAVSV 696
Score = 76.6 bits (187), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 73/130 (56%), Gaps = 20/130 (15%)
Query: 1319 GGYMEAKKRKLEEQF-ELEANSDSRGG-----IFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
G YM K+ KL+ Q E+E +++ G IF+G+AI +NG+T +PS
Sbjct: 183 GDYMRRKRAKLQVQNDEMEEQNEANGSAGKPKIFRGLAIHINGFT-----------IPSV 231
Query: 1373 EELKALMMLHGGIYHHYESSR--TTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGK 1430
+ L+ ++ +GG YH Y + TH++ASNL K+ + K KI+ P+WI S+ AG
Sbjct: 232 QVLRGMITQNGGTYHAYLDKKGLVTHVVASNLTPAKVLEFK-HMKIVTPDWITKSVEAGL 290
Query: 1431 LLDHKKYLLY 1440
LL + ++L+
Sbjct: 291 LLPWRDFILH 300
>gi|302765499|ref|XP_002966170.1| hypothetical protein SELMODRAFT_407478 [Selaginella moellendorffii]
gi|300165590|gb|EFJ32197.1| hypothetical protein SELMODRAFT_407478 [Selaginella moellendorffii]
Length = 629
Score = 181 bits (458), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 137/225 (60%), Gaps = 6/225 (2%)
Query: 1896 SKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLA 1955
S +V A+SCDE Y+D S + P AS +R I + T CT S G +N L ARLA
Sbjct: 350 SPLVQAISCDEAYLDVSGMGD-----PASIASAIRREIFEATRCTASAGISANILLARLA 404
Query: 1956 TKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQ 2015
TKKAKPNGQF + Q +FM+N+P+ +LPGVG L KL++L TC DL+ ++ + L+
Sbjct: 405 TKKAKPNGQFQIHLQEAEEFMMNLPVEELPGVGWVLREKLHALKLFTCSDLRLLTSETLR 464
Query: 2016 NEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVE 2075
G K G TLY H RG D +++ ++KS+ AEVN+G+RF + + FL L+ EV
Sbjct: 465 KHFGAKTGETLYNHARGIDHRKVQAPQEKKSIGAEVNWGVRFSTPADAQNFLVTLSEEVA 524
Query: 2076 KRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSS 2120
RL + + G+ T+K+ R A E KF+G G+CD I++S++
Sbjct: 525 SRLRKAAVHGRTFTMKVKKRKTGAG-EPEKFMGCGICDNISRSTT 568
Score = 104 bits (259), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 105/371 (28%), Positives = 155/371 (41%), Gaps = 105/371 (28%)
Query: 1304 SPSEPKTTAPKKKKKG-----GYMEAKKRKLEEQFELEA--------NSDSRG------G 1344
SP+ ++ + + + +G YM K RKL EQF+ EA N+D +
Sbjct: 24 SPASKRSASARTRDEGMGDFGRYMTNKVRKLGEQFQAEASNPEAPRGNADEKSIEEITSK 83
Query: 1345 IFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYES-SRTTHIIASNLP 1403
IF+G++I VNG+T +PS +EL+ LM+ HGG + +Y S +R THII SNLP
Sbjct: 84 IFEGISIHVNGFT-----------IPSHQELRTLMLRHGGNFENYFSKTRVTHIICSNLP 132
Query: 1404 HTKIKKLKPGDK---IIKPEWIVDSISAGKLLDHKKYLL-------YTGTDAKPLTKLLQ 1453
+KIK+ + K ++KP WIVDSI+ GKLL Y L T + KLLQ
Sbjct: 133 QSKIKEFRSFSKGLPVLKPGWIVDSIAVGKLLPWASYQLEAIYSNQSTLSSFYGTLKLLQ 192
Query: 1454 KSYFENTEAPCCSKSLVETSSHTSTVSDSV-------DNTEESKSEAVNSEESKSEAANP 1506
EN E +SH + D + EE +E VN E+ SE
Sbjct: 193 DGT-ENVEEQELVAEAKADTSHQNLAGDGAGKEIEYDEQDEEGGAEEVNVEDGLSE---- 247
Query: 1507 IESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQY 1566
N ++ ST + N F+ ++ SRLH + T + ++
Sbjct: 248 -----------------NEYMEHRRSHSTLDDPN--FVQNYFKYSRLHFIGTWRNRYQAT 288
Query: 1567 VNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFV 1626
V R +T D LE++ I+H+DM FV
Sbjct: 289 VQMQRR--------------------VTLDPALEKS-------------IIHVDMAGMFV 315
Query: 1627 SVGIRHHPELQ 1637
+ P L+
Sbjct: 316 KTAKKCCPNLE 326
Score = 53.1 bits (126), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 10/75 (13%)
Query: 1686 GMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLN----- 1740
GMFV A K CPNL+IV YDFEGY++V+ LY ++ + ++A+S +E++L+
Sbjct: 312 GMFVKTAKKCCPNLEIVSYDFEGYEQVADKLYEILHRHSPLVQAIS--CDEAYLDVSGMG 369
Query: 1741 ---ALPEDIRQEVLD 1752
++ IR+E+ +
Sbjct: 370 DPASIASAIRREIFE 384
>gi|407924817|gb|EKG17843.1| DNA-repair protein UmuC-like protein [Macrophomina phaseolina MS6]
Length = 1181
Score = 181 bits (458), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 108/322 (33%), Positives = 167/322 (51%), Gaps = 59/322 (18%)
Query: 1898 IVSAVSCDEMYVDCS-----------QLLQELSLTPLQ-----FASYLRETIAKETGCTC 1941
IV +VS DE +D S + + E S+ Q A LR+ + +TGC
Sbjct: 460 IVQSVSIDEALIDVSVQCIAVGGSDGKKMSEGSIYREQTEADSIAQRLRDEVKNKTGCAV 519
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N L A++A +KAKP GQ+ + P+ I DF+ + + DLPGV +S+ KL +G +
Sbjct: 520 SVGVGPNILCAKVALRKAKPAGQYQIKPEQILDFIGKLEVQDLPGVAYSIGSKLEEIGIK 579
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
GD+++ S +RL N +G K G ++ + RG D E+ RKS+SAEVN+G+RF + +
Sbjct: 580 LVGDIRSYSKERLINTLGPKTGEKIWDYSRGVDRTEVGDFVVRKSISAEVNWGVRFTDQE 639
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+++ F++ L GE+++RL + ++KG+ +T+K+M R+A+AP + K LGHG CD KS L
Sbjct: 640 QVDEFMENLCGELQRRLMKARVKGRQLTIKVMKRAADAPLDPPKHLGHGKCDTFNKSLVL 699
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
I + + KE L I
Sbjct: 700 GI-------------------------------------------ATNDKGVLAKEALSI 716
Query: 2182 VNKLKVDPVELRGIGIQVSKLE 2203
+ P ELRGIGIQ+++LE
Sbjct: 717 LKGFGFSPGELRGIGIQMTRLE 738
Score = 95.1 bits (235), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 101/237 (42%), Gaps = 52/237 (21%)
Query: 1543 FLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEET 1602
FL ++Y +SRLHHLST WK L E
Sbjct: 319 FLEQYYRESRLHHLST----------------------------WKADLKAQLQAMAAEK 350
Query: 1603 FSDNPSPSEPEP----VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVD 1658
S + P I+H+D D FF +V ++ +P+ QD+P VAH G+ S++
Sbjct: 351 SSSQKEKQKRAPGTRRYILHVDFDSFFAAVSLKKYPQYQDKPAVVAHSNGSGSEIAS--- 407
Query: 1659 RQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYN 1718
RE+G+ NGM++ A + CP L I+PYDF Y+E S Y+
Sbjct: 408 ---------------CNYPAREFGIKNGMWMKRAQELCPELNILPYDFSAYEEASKSFYD 452
Query: 1719 LIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
I + +++VS+ +E+ ++ + I D + + REQ + +AQ +
Sbjct: 453 AILATDGIVQSVSI--DEALIDVSVQCIAVGGSDGKKMSEGSIYREQTEADSIAQRL 507
Score = 72.4 bits (176), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 70/132 (53%), Gaps = 16/132 (12%)
Query: 1321 YMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALM 1379
Y KK KL+ EL + S + IF+GV VNGYT+ PS +L L+
Sbjct: 40 YFRRKKIKLQNLDAELRSRSADKPQIFRGVVAHVNGYTQ-----------PSLNDLHRLI 88
Query: 1380 MLHGGIYHHYESSRTT--HIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY 1437
+ HGG + Y +TT HIIAS+L K + + +I+KP W+VDS++AGKLL Y
Sbjct: 89 VSHGGGFMQYLDGKTTVTHIIASSLTPKKAVEFR-RYRIVKPAWVVDSVNAGKLLPWDNY 147
Query: 1438 -LLYTGTDAKPL 1448
+L G K L
Sbjct: 148 RVLEEGAGQKVL 159
>gi|33620688|ref|NP_891577.1| topoisomerase II large subunit [Enterobacteria phage RB49]
gi|33438558|gb|AAL15132.2| topoisomerase II large subunit [Enterobacteria phage RB49]
Length = 607
Score = 181 bits (458), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 186/643 (28%), Positives = 296/643 (46%), Gaps = 87/643 (13%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
++ S EH+L R YIGS +L + T +I+YVPGL KI DEI+ N+
Sbjct: 4 FRILSDREHVLKRAGMYIGSTTYEEHQRFLFGKWT------KISYVPGLVKIIDEIIDNS 57
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D R I+V+ + N ++V +NG+GIP H++T+
Sbjct: 58 VDEAIRTNFEFANVISVDIQNNIVTVTDNGRGIP----------------QHMVTTP--- 98
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
E ++ P + SN+ D+ +++T G NG G+ L N FS F T E +
Sbjct: 99 -EGTQIPQ--PVAAWTRTKAGSNF-DDTNRLTQGMNGVGSSLSNFFSDWFTGVTCDGETE 154
Query: 216 KSFKQV-WKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
+ + +N++ + P G T +TF PD F+ +D ++D++ R
Sbjct: 155 MTVQCTNGAENITWSSKPSKLKG-----TNVTFCPDFDHFEGYMMDNSVLDIVHDRLQSL 209
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRG 334
+ + NG+++ V F+DY KLY D DP I E+ N + A G
Sbjct: 210 SVIFPKITFKFNGKRI-VSKFKDYAKLYND------DPFVI--EDKNFSLALVPAVEGEG 260
Query: 335 FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNK----------DLGCTIIM--L 382
F+ VSF N + T GG HVD V D + ++I++ +KK+ K L C +I+ L
Sbjct: 261 FKSVSFANGLFTKNGGTHVDYVTDDLCEEIVKRIKKEYKVDVTKAAVKSGLTCILIVREL 320
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMAL-KPFQVKNHIWIFINCLIVNPTFDSQTKE 441
+F++ +L I + L L K K +I + I +++ +
Sbjct: 321 PNLRFDSQTKERLTNPTGDIKRHIDLDFKKLAKVIAKKENIIMPIIAVVLARKEAADKAA 380
Query: 442 NMTLQKGSFGSTCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVF 501
K + + ++ AN GT + TL LTEGDSA + +S V +D +G F
Sbjct: 381 ATKAAKAAKRAKVAKHVK-ANLIGT--DAETTLFLTEGDSAINYLIS---VRDQDLHGGF 434
Query: 502 PLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQ 561
PLRGK L E +I++NAEI N++ I GLQ+ V+ + ++Y + IMTD D
Sbjct: 435 PLRGKTLTTWEQPEAKIVKNAEIFNIMAITGLQFG-----VDALDVMQYKNIAIMTDADT 489
Query: 562 DG-SHIKGLIINFIHHNWPTLL---RLPFLEEFITPIIKA--TKAREELSFYSLPEFEEW 615
DG IK +I+F WP L R+ F++ TPII A K + +Y L +FE
Sbjct: 490 DGIGSIKPSLISFFAR-WPELFEDGRIRFIK---TPIIIAEPKKGDDVRWYYDLEDFEND 545
Query: 616 KEETTNWHTYKIKYYKVVYVTGVL-LFKMNLHKVTSDSISMFI 657
++ IK Y + Y+ G+ L + + H+V +D + I
Sbjct: 546 RD--------NIKGYNIRYIKGLASLTESDYHRVINDPVMEII 580
>gi|392863431|gb|EAS35817.2| DNA damage repair protein Mus42 [Coccidioides immitis RS]
Length = 1128
Score = 181 bits (458), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 112/322 (34%), Positives = 168/322 (52%), Gaps = 59/322 (18%)
Query: 1898 IVSAVSCDEMYVDCSQL-----------LQELSLTPLQ-----FASYLRETIAKETGCTC 1941
IV +VS DE VD ++L + E S+ Q A LR+++ ++TGC
Sbjct: 442 IVQSVSIDEALVDITKLCLEAGGSEGKGISEGSIWKEQAKADEIAQTLRDSVKQKTGCDV 501
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N LQA+LA +KAKP GQF L P+++ +F+ + + LPGV +SL KL LG +
Sbjct: 502 SVGIGGNILQAKLALRKAKPAGQFQLKPEVVLEFIGELTVQQLPGVAYSLGAKLEELGVK 561
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ +S +RL + +G K G L+ + RG D+ ++ RKSVSAE+N+GIRF
Sbjct: 562 FVKDIRELSRERLTSNLGPKTGAKLWDYARGIDNADVGDVAPRKSVSAEINWGIRFVTQA 621
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
++E F++ L E+ +RL E +KGK +T+++M R+ +AP K LGHG CD KS
Sbjct: 622 QVEEFVQSLCDELHRRLMENGVKGKQLTMRIMRRALDAPLGPPKHLGHGKCDMFNKS--- 678
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
LL V + +S+ LG KE + I
Sbjct: 679 -----------VLLGVAT-----NSSEVLG------------------------KEAVSI 698
Query: 2182 VNKLKVDPVELRGIGIQVSKLE 2203
+ P LRG+G+Q++KLE
Sbjct: 699 LRSFNFSPGNLRGLGVQMTKLE 720
Score = 160 bits (405), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 131/467 (28%), Positives = 209/467 (44%), Gaps = 109/467 (23%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G Y KK KL+ E+ ++S + IFQGV VNGYT+ PS +L
Sbjct: 38 GEYFRRKKLKLQNLDAEIRSSSPNNPPIFQGVVAHVNGYTQ-----------PSLNDLHR 86
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHK 1435
L++ HGG + Y S+T THIIAS+L K ++ + +++KP W+V+SI+AG+LL
Sbjct: 87 LIVSHGGAFLQYLDSKTAATHIIASSLTPKKREEFR-KYRVVKPAWVVESINAGRLLPWN 145
Query: 1436 KY-LLYTGTDAKPL-----------TKLLQKSYFENTE--------------APCCSKSL 1469
+ ++ G K L T+ SY + TE A S
Sbjct: 146 SFRVVDEGASQKVLKFSDNGQIVSQTRTQSSSYRDQTESSWYIARLAPRYPDAKGFENST 205
Query: 1470 VETSSHTST--VSDSVDNTEESKSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISA 1527
+ T S + V DSV NT+ S + + +E + + P+E++ T E + +
Sbjct: 206 IPTPSPKAVGDVGDSVFNTKASTN--IAQQEQGFDDSIPVENRTTSGDAEVAVHPEDTDE 263
Query: 1528 PKPQA--------------------SSTKNAS--NEDFLGEFYNKSRLHHLSTMGSMFKQ 1565
P+ + +N+S N DF+ ++Y +SRLHHLST + K
Sbjct: 264 PRQEPLEKTKDNMTPEEYNAQLLSNPHMRNSSGVNPDFIRQYYRESRLHHLSTWKAELKA 323
Query: 1566 YVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFF 1625
+ E + ++R K + + I+H+D D FF
Sbjct: 324 KLQE------ATLAKVSSLRTPKKHVQGSRR------------------YILHVDFDSFF 359
Query: 1626 VSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGN 1685
+V IR +PEL D+PVA+AHG G S++ R +G+ N
Sbjct: 360 AAVSIRKNPELADKPVAIAHGTGAGSEIAS------------------CNYPARAFGIQN 401
Query: 1686 GMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSL 1732
GM++ AL+ CP+LK++PYDF Y++ S Y I + +++VS+
Sbjct: 402 GMWMQGALQMCPDLKVLPYDFAAYEDASRKFYEAILDIDGIVQSVSI 448
>gi|452000474|gb|EMD92935.1| hypothetical protein COCHEDRAFT_1154645 [Cochliobolus heterostrophus
C5]
Length = 1204
Score = 181 bits (458), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 126/357 (35%), Positives = 180/357 (50%), Gaps = 68/357 (19%)
Query: 1898 IVSAVSCDEMYVDCSQLL-----------QELSLTPLQ-----FASYLRETIAKETGCTC 1941
IV +VS DE +D S L E S+ Q A LR+ + TGC
Sbjct: 483 IVQSVSIDEALIDVSNLCIAVGGSDGKSHSEDSIYREQAKADEIALNLRDEVRSRTGCNV 542
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G GSN L A+LA +KAKP GQ + P+ + F+ + + DLPGV S+ KL S+G +
Sbjct: 543 SVGIGSNILLAKLALRKAKPAGQHQIKPEEVLGFIGQLQVQDLPGVAGSIGGKLESIGVK 602
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ ++ +RL +G K G LY++ RG D +E+ + RKSVSAEVN+G+RF+N
Sbjct: 603 LLKDVRKLNKERLIQTLGPKTGEKLYEYSRGIDHQEVGEQVIRKSVSAEVNWGVRFENQD 662
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ + F+ L GE++KRL + ++KGK T+K+M RS +AP + K LGHG CD +KS
Sbjct: 663 QADEFIASLCGELQKRLLKERVKGKQFTMKVMRRSPDAPMDPPKHLGHGKCDTHSKS--- 719
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL-KEVLF 2180
LLL GV + A ++L KE L
Sbjct: 720 ------------LLL----------------GVA-------------TNAKEVLTKEALA 738
Query: 2181 IVNKLKVDPVELRGIGIQVSKLE-HQSKTLATID------TFFTNKGKPPDQLNNPR 2230
++ P ELRGIGIQ++KLE +S T T++ F KPP P+
Sbjct: 739 MLRGFGFTPGELRGIGIQMTKLELMRSATDGTVEGSQPKLQFKVRNAKPPQVARAPQ 795
Score = 105 bits (262), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 110/238 (46%), Gaps = 52/238 (21%)
Query: 1542 DFLGEFYNKSRLHHLST----MGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDE 1597
+FL ++Y +SRLHHLST + S + NE + + +R++
Sbjct: 341 NFLEQYYRESRLHHLSTWKADLKSQLQALANESSSSQKAKQKRVPGVRRY---------- 390
Query: 1598 DLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGV 1657
I+HID D FF +V ++ HPEL+D+P VAHG+G+ S++
Sbjct: 391 ------------------ILHIDFDSFFAAVSLKKHPELKDKPAVVAHGQGSGSEIAS-- 430
Query: 1658 DRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLY 1717
R +G+ NGM++ A + CP+LKI+PYDF Y+E S Y
Sbjct: 431 ----------------CNYPARTFGIKNGMWMKRAQELCPDLKILPYDFPAYEETSRTFY 474
Query: 1718 NLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
+ I + +++VS+ +E+ ++ I D S + + REQ + +A ++
Sbjct: 475 DTILTTGGIVQSVSI--DEALIDVSNLCIAVGGSDGKSHSEDSIYREQAKADEIALNL 530
Score = 69.3 bits (168), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 15/120 (12%)
Query: 1321 YMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALM 1379
Y KK KL+ ++ + + + IF+G+ VNGYT+ PS +L L+
Sbjct: 40 YFRRKKIKLQNLDADIRSQASDKPQIFKGIVAHVNGYTQ-----------PSLIDLHTLI 88
Query: 1380 MLHGGIYHHYESSRTT--HIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY 1437
+ HGG + Y +TT HIIAS+L K + + +I+KP W+VDSI AGKLL +Y
Sbjct: 89 VQHGGGFMQYLDGKTTVTHIIASSLTPKKAVEFR-RYRIVKPAWVVDSIRAGKLLPWNEY 147
Score = 45.4 bits (106), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 28/164 (17%)
Query: 1738 FLNALPEDIRQEVLDD-----LSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPSPSPI 1792
FL ALPED+R+EV+D L+ + V+S++ T P A + P P+P
Sbjct: 1043 FLAALPEDMRKEVIDQHNAAKLNAFRFVMSKK--TKAPSAP-----------KQPRPAPK 1089
Query: 1793 LDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCE---SQPEPSDIEMFSEYLSNLV-EE 1848
+ + T T+ LS+ ++R+ +R W+ E P D+ +YL +V EE
Sbjct: 1090 IKVPRPPTATFTTQKLSTE---PDLRSAMRLWISEFDKEGPYEEDVTALIKYLKKVVQEE 1146
Query: 1849 RHLNPIVILLRFLRRHVGKKEST---VWAEAYQEMLSCVQSAMK 1889
R +N V L++++ + K T E+++ L+ ++ ++
Sbjct: 1147 RDMNKAVGLVKWVGYIISDKMETKEGFACESWKRCLATIKDGVR 1190
>gi|327303288|ref|XP_003236336.1| DNA damage repair protein Mus42 [Trichophyton rubrum CBS 118892]
gi|326461678|gb|EGD87131.1| DNA damage repair protein Mus42 [Trichophyton rubrum CBS 118892]
Length = 1153
Score = 181 bits (458), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 112/321 (34%), Positives = 167/321 (52%), Gaps = 59/321 (18%)
Query: 1898 IVSAVSCDEMYVDCS-----------QLLQELSLTPLQ-----FASYLRETIAKETGCTC 1941
IV +VS DE VD S + + E S+ Q A LR+ I ++TGC
Sbjct: 443 IVQSVSIDEALVDVSSSCIDTGGSDGRAISESSIYREQEKADTIAQKLRDAIKQKTGCHV 502
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N LQARLA KKAKP GQF L P+ + DF+ ++DLPGV +L KL LG +
Sbjct: 503 SVGIGQNILQARLALKKAKPAGQFQLKPENMLDFIGEFAVTDLPGVAFNLGAKLEELGVK 562
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ +S ++L +G K G L+++ RG D+ + + RKSVSAE+N+GIRF N
Sbjct: 563 YVKDIRQLSREKLTGHLGPKTGAKLWEYARGIDNTVVGEQEIRKSVSAEINWGIRFTNQA 622
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+ + F++ L+ E+ +RL E +KG+ +T+++M R+A++P + K LGHG CD KS
Sbjct: 623 QADEFVRSLSEELHRRLLENGVKGRQLTMRIMRRAADSPVDPPKHLGHGKCDTFNKS--- 679
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
++L S AS LG +E + I
Sbjct: 680 ------------IILHTST----NASDILG------------------------REAVSI 699
Query: 2182 VNKLKVDPVELRGIGIQVSKL 2202
+ P +LRG+G+Q++KL
Sbjct: 700 LRSFNFSPGDLRGLGVQMTKL 720
Score = 162 bits (411), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 146/509 (28%), Positives = 223/509 (43%), Gaps = 108/509 (21%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G Y KK KL+ E+ + S + IF+GV VNGYT+ PS +L
Sbjct: 38 GDYFRRKKIKLQNLDAEIRSASPNNPLIFKGVVAHVNGYTQ-----------PSLNDLHR 86
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHK 1435
+++ HGG + Y +T THIIAS L K ++L+ +++KP WIVDSI AG++L +
Sbjct: 87 MIVSHGGGFLQYLDGKTAATHIIASALTPKKKEELR-RYRVVKPAWIVDSIKAGRMLPWE 145
Query: 1436 KY-LLYTGTDAKPLT---------KLLQKSYFENTEAPC--CSKSLVETSSHTS---TVS 1480
Y LL GT K L + Q ++ PC S+S E S S
Sbjct: 146 TYRLLDEGTSQKILKLDANGISTENITQSQSYKAQTDPCWYTSQSNKEVSPDDSPRIVKC 205
Query: 1481 DSVDNTE------ESKSEAVNSEESKSEAANPIESKQ-----------TVKTKESKLETV 1523
S D TE E ++ +++ A P ++ V + S L+ V
Sbjct: 206 PSADTTEDPLLEDEPATDVQATDQVNGVAMAPTTPEEFGASGSDDLLSPVHPERSSLDQV 265
Query: 1524 NIS----APKPQASSTKNA-------------SNEDFLGEFYNKSRLHHLSTMGSMFKQY 1566
S KP S NA N DF+ ++Y +SRLHHLST + K
Sbjct: 266 YTSPKAGGRKPLTSEEHNALLLSKAHIRQSSVVNPDFIQQYYRESRLHHLSTWKAELKAQ 325
Query: 1567 VNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFV 1626
+ L ++ RG + K S G I+H+D D FF
Sbjct: 326 LQSLSQE-----RGTTKLPPIKRSPGTRR-------------------YILHVDFDSFFA 361
Query: 1627 SVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNG 1686
+V ++ HPEL D P+AVAHG G S++ R++G+ NG
Sbjct: 362 AVSLQKHPELADCPIAVAHGTGPGSEIAS------------------CNYPARKFGVKNG 403
Query: 1687 MFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDI 1746
M++ AL++CP LK++PYDF Y++ S Y I + +++VS+ +E+ ++ I
Sbjct: 404 MWMKGALERCPELKVLPYDFPAYEDASRKFYEAILDIDGIVQSVSI--DEALVDVSSSCI 461
Query: 1747 RQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
D + +S + REQ + +AQ +
Sbjct: 462 DTGGSDGRAISESSIYREQEKADTIAQKL 490
Score = 43.1 bits (100), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 68/137 (49%), Gaps = 21/137 (15%)
Query: 1738 FLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLV-RTPSPSPILDMS 1796
FL ALPEDIRQEVL++ RQ + +EQ A + +S T+ RT + S ++
Sbjct: 968 FLAALPEDIRQEVLEE-HRQARI--QEQGGLNLAA--VHEKNSRTIQHRTNNSSVHVEPE 1022
Query: 1797 TSIL--------DTTTSHILSSNVSLQEMRTMLREWMCE---SQPEPSDIEMFSEYLSNL 1845
+L T TS LS SL E+R L EW +P D+E ++YL +
Sbjct: 1023 QKLLRFDPRPAKPTFTSKRLS---SLSELREALSEWYSSFENEEPYEEDVEALTKYLRRV 1079
Query: 1846 V-EERHLNPIVILLRFL 1861
V EER ++ L R+L
Sbjct: 1080 VLEERDISKATDLARWL 1096
>gi|336276175|ref|XP_003352841.1| hypothetical protein SMAC_04955 [Sordaria macrospora k-hell]
gi|380092959|emb|CCC09196.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1305
Score = 180 bits (457), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 166/322 (51%), Gaps = 59/322 (18%)
Query: 1898 IVSAVSCDEMYVDCSQL-----------LQELSLTPLQ-----FASYLRETIAKETGCTC 1941
+V +VS DE +D + + + E S+ Q AS LRE I + T C
Sbjct: 461 VVQSVSIDEALIDVTDIVMAEAGSKRVGISEGSIWREQEKVDRMASKLRERIKETTDCHV 520
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N L A++A +KAKP GQ+ + P+ + DF+ + + DLPGV +S+ KL LG +
Sbjct: 521 SVGIGGNILLAKVALRKAKPAGQYQIKPEEVLDFLGELKVEDLPGVAYSIGAKLEELGIK 580
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ S +RL + +G K G L+++ RG D E+ + RKSVSA+VN+GIRF N
Sbjct: 581 FVKDIRQTSKERLVSALGPKTGEKLWEYSRGIDRAEVGEQPIRKSVSADVNWGIRFVNQD 640
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
E E F++ L+ E+E+RL +KGK +T+K+M R+A+AP + K LGHG CD KS S
Sbjct: 641 EAEEFVRNLSKELERRLLNEGVKGKHLTMKIMRRAADAPLDPPKHLGHGKCDTFNKSVS- 699
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
F + S E I KE + I
Sbjct: 700 -----------FGVATNSGEV-------------------------------IGKEAVAI 717
Query: 2182 VNKLKVDPVELRGIGIQVSKLE 2203
+ K P +LRG+G+Q++KLE
Sbjct: 718 LRSYKFSPGDLRGLGVQMTKLE 739
Score = 150 bits (380), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 129/483 (26%), Positives = 211/483 (43%), Gaps = 128/483 (26%)
Query: 1321 YMEAKKRKLEEQ-FELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALM 1379
Y + K+ KL+ + +L +++ + IF+GV + V GY + PSA +L +
Sbjct: 42 YFQNKQIKLQNRDAQLRSSAKDKPQIFKGVVVHVLGY-----------VQPSANDLHDTL 90
Query: 1380 MLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY 1437
+ HGG + Y + +T THIIAS++P KI L +++KP W+VDS++AGKLL +Y
Sbjct: 91 VQHGGGWLQYLAGKTMATHIIASSVPPKKIVDLA-NYRVVKPAWVVDSVAAGKLLPWTEY 149
Query: 1438 -LLYTGTDAKPLT----KLLQ--------KSYFENTEAPCCSKSLVETSSHTS------- 1477
+ G + + K+L + Y E TE + L + SS +
Sbjct: 150 RTIEKGPKQRTIKFDAGKMLSSQPRQQTPQRYREQTENSFYTNQLKKWSSPSQPKTPFKS 209
Query: 1478 ---TVSDSVDNTEE------------SKSEAVNSEESKSEAANP---------IESKQTV 1513
TV+D++++ E+ SK E + E + P +E
Sbjct: 210 PSVTVNDNIEDFEDDMSVDLLQAPASSKPELLALVEPDKSSEQPPTTPPHQAHLEPSPEA 269
Query: 1514 KTKESKLETVNISAP---------KPQASSTKNA-------------SNEDFLGEFYNKS 1551
+ ++ I P KP S NA +N DFL ++Y++S
Sbjct: 270 RPVPPEMADPGIPEPGKSEEIQPAKPLTSEEHNARLLADPNMRKASTANPDFLKQYYSES 329
Query: 1552 RLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPS--P 1609
RLHHLST + K + L E+ + P+ P
Sbjct: 330 RLHHLSTWKAQLKSRMQSLA---------------------------AEKGPAKKPAKRP 362
Query: 1610 SEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQR 1669
++ IMH+D D FF +V ++ PE +D+P VAHG G+ S++
Sbjct: 363 ADSRRYIMHVDFDSFFCAVSLKKAPEYRDKPAVVAHGNGSGSEIAS-------------- 408
Query: 1670 TMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEA 1729
R++G+ NGM++ AL CP+LKI+PYDF GY+ S Y+ I + +++
Sbjct: 409 ----CNYPARKFGVKNGMWMKRALALCPDLKILPYDFPGYEAASQQFYDAILEMGGVVQS 464
Query: 1730 VSL 1732
VS+
Sbjct: 465 VSI 467
>gi|119581065|gb|EAW60661.1| topoisomerase (DNA) II alpha 170kDa, isoform CRA_a [Homo sapiens]
Length = 837
Score = 180 bits (457), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 79/113 (69%), Positives = 97/113 (85%)
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNW 578
+ENAEINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNW
Sbjct: 1 MENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNW 60
Query: 579 PTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P+LLR FLEEFITPI+K +K ++E++FYSLPEFEEWK T N +K+KYYK
Sbjct: 61 PSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYK 113
Score = 152 bits (385), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + REIV+NI+R++ GE+PLPM P YKN
Sbjct: 334 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEEPLPMLPSYKN 393
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V++GE+AIL+ +EI+EL V WT YK+ L+ +L+G EK
Sbjct: 394 FKGTIEELAPNQYVISGEVAILNSTTIEISELPVRTWTQTYKEQVLEPMLNGTEK 448
Score = 57.0 bits (136), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
++YLL M W LT E+K+EL + R++K EL+ LK+K+P+DLW +DL E+
Sbjct: 624 FNYLLDMPLWYLTKEKKDELCRLRNEKEQELDTLKRKSPSDLWKEDLATFIEE 676
>gi|409046612|gb|EKM56092.1| hypothetical protein PHACADRAFT_174265 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1223
Score = 180 bits (457), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 115/327 (35%), Positives = 163/327 (49%), Gaps = 54/327 (16%)
Query: 1899 VSAVSCDEMYVDCS----QLLQELSLT---------PLQ-FASYLRETIAKETGCTCSTG 1944
+ AVS DE +D + ++ E+SL+ P + FA +R K +GC S G
Sbjct: 574 LQAVSVDEAIIDATSSVRRIRNEISLSKGTDIITTDPAKDFAEAIRAQAKKTSGCEVSIG 633
Query: 1945 FGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNS-LGAQTC 2003
N + ARLAT++AKP G FHL I++FM + + L G GH+ K LG
Sbjct: 634 ISHNIMLARLATRRAKPGGSFHLQAADIAEFMEPLDIDALHGFGHATHQKAQEKLGTTNL 693
Query: 2004 GDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEM 2063
G+L S L + +G G TLY RG D ++L + RKSVS ++NYGIRF NN+++
Sbjct: 694 GELSKKSKAVLCDALGKGTGETLYNALRGIDRRKLESDKPRKSVSCDINYGIRFDNNEQV 753
Query: 2064 ETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPI 2123
ETF+ QLAGEV +RL E+ M+G+ +TLK++ R P EA KF+GHG+C TK +
Sbjct: 754 ETFIFQLAGEVSRRLNEIDMRGRSLTLKVLKRDPATPVEAPKFMGHGMCVSFTKQVQM-- 811
Query: 2124 YERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVN 2183
AP + IS I + ++
Sbjct: 812 -----------------IAPGNRA--------------------ISDPKIIGEHAWKLLR 834
Query: 2184 KLKVDPVELRGIGIQVSKLEHQSKTLA 2210
++P ELRGIGIQ+ KLE S +A
Sbjct: 835 SFNINPKELRGIGIQIQKLESSSAVIA 861
Score = 144 bits (364), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 123/514 (23%), Positives = 224/514 (43%), Gaps = 117/514 (22%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDS----RGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEE 1374
G YM K+ KL+ Q S R IF G+ I++NG+T+ PS ++
Sbjct: 99 GEYMHRKRAKLQVQNAEMGTKGSPSVIRSRIFSGLQIYINGWTQ-----------PSVQD 147
Query: 1375 LKALMMLHGGIYHHY--ESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL 1432
L+ L++ H GIYH Y + S THII +L K+K+ + K+++PEW+V S+ AG LL
Sbjct: 148 LRQLIIQHDGIYHAYLDKKSLVTHIITCSLTPAKVKEFQ-HMKVVRPEWLVRSVEAGFLL 206
Query: 1433 DHKKYLL----------------------YTGTDAKPLTKLLQKSYFENTEAPCCSKSLV 1470
++ + +KP ++L Q T +P ++
Sbjct: 207 PWHDFIFKPGERIEASQGRQTAQKSLLHGFVAPSSKPASQLPQSKQHSATASPYDGAHII 266
Query: 1471 ET-----------------------SSHTSTVSDSVD--------NTEESKSEAVNSEES 1499
+ ++HT+ + V T + A +S
Sbjct: 267 TSTPSARIAGPSVSPKKLTLTVYPEAAHTAASAGLVSASGPSTPPQTPQDSKFAGSSPGR 326
Query: 1500 KSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNE----DFLGEFYNKSRLHH 1555
S +P ++ + + N++A + A T A++ DF+ +Y SRLHH
Sbjct: 327 PSYMTDPATPEEAKRIPGYAADKTNVAAQRAMADPTWRAAHTSVAPDFIEGYYRNSRLHH 386
Query: 1556 LSTMGSMFKQYVNELREK-HDGVFRGIEA-IRKWKTSLGITE--DEDLE-ETFSDNPS-- 1608
LST + + V E +E+ DG + + + +S +++ E+++ + ++ +P+
Sbjct: 387 LSTWKAELRSLVAEAQERAEDGTIITMGTLVDGYSSSQSVSKIMQENMDRKGWAADPTGD 446
Query: 1609 ---------------------PSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGK 1647
++ + VIMH D D FFVS G+ P L+ +P+ V H +
Sbjct: 447 ISMKDAQLIRKKGGKGKEKAIDTDQDRVIMHCDFDSFFVSAGLVDRPHLRGKPLVVCHSQ 506
Query: 1648 GNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFE 1707
GN G +E + R++G+ +GM + A K CP L+ +PY+F+
Sbjct: 507 GNQG----GQSSTSE--------IASASYEARQFGVRSGMSLQQAQKLCPELQTMPYEFQ 554
Query: 1708 GYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNA 1741
YK++S Y ++ + +++AVS+ +E+ ++A
Sbjct: 555 KYKQLSLQFYTILMAHADDLQAVSV--DEAIIDA 586
>gi|453084408|gb|EMF12452.1| DNA repair protein [Mycosphaerella populorum SO2202]
Length = 1138
Score = 180 bits (457), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 109/323 (33%), Positives = 167/323 (51%), Gaps = 59/323 (18%)
Query: 1898 IVSAVSCDEMYVDCSQLLQELSLT----------------PLQFASYLRETIAKETGCTC 1941
IV +VS DE VD S + S T + A LR+ + ++TGC
Sbjct: 394 IVQSVSIDEALVDISVMCFTGSGTDGVRRDEGAVHREQSRADEIAQALRDEVLQKTGCAV 453
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G+N LQA++A +KAKP GQ+ + P + +F+ + + LPGV S+ KL +G +
Sbjct: 454 SVGIGANILQAKIALRKAKPAGQYQIKPDDVLEFIGQLEVQKLPGVAWSIGGKLEEIGIK 513
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ S ++L N +G K G +Y++ RG D E+ + RKSVSAEVN+G+RF+N +
Sbjct: 514 LVKDVRETSKEKLINTLGPKTGEKIYEYARGIDKTEVGEQVVRKSVSAEVNWGVRFENQE 573
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
+++ F+ L GE+ KRL + ++KG+ +T+K+M R+A+AP + K LGHG CD KS L
Sbjct: 574 QVDEFMSGLCGELHKRLMKERVKGRQLTMKVMKRAADAPLDPPKHLGHGKCDVFNKSLQL 633
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
GV T +L I +E + +
Sbjct: 634 -------------------------------GVA---TNDHAL---------IAREAIAL 650
Query: 2182 VNKLKVDPVELRGIGIQVSKLEH 2204
+ + P ELRGIGIQ+ KL+
Sbjct: 651 IKSFNISPGELRGIGIQMQKLDQ 673
Score = 103 bits (257), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 110/238 (46%), Gaps = 52/238 (21%)
Query: 1542 DFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEE 1601
DFL ++Y +SRLHHLST WK L E
Sbjct: 252 DFLEQYYRESRLHHLST----------------------------WKADLKSQLQALASE 283
Query: 1602 TFSDNPSPSEPEP----VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGV 1657
S + + +P +MH+D D FF ++ ++ P+ +D+PVAVAHG G+ S++
Sbjct: 284 KSSSQKAKQKRQPGQRRYVMHVDFDSFFAAISLKKCPQYKDKPVAVAHGGGSGSEIAS-- 341
Query: 1658 DRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLY 1717
R++G+ NGM++ A + CP++KI+PYDF GY++ S Y
Sbjct: 342 ----------------CNYPARKFGVSNGMWMKRAQELCPSIKILPYDFPGYEDASRKFY 385
Query: 1718 NLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
+ I + +++VS+ +E+ ++ D + R + + REQ+ + +AQ +
Sbjct: 386 DAIMATGGIVQSVSI--DEALVDISVMCFTGSGTDGVRRDEGAVHREQSRADEIAQAL 441
Score = 45.8 bits (107), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 1394 TTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY 1437
THIIASNL K ++ K +I+KP W+VDSI AGKLL Y
Sbjct: 2 VTHIIASNLTRKKKEEFK-RYRIVKPAWVVDSIKAGKLLPWDTY 44
>gi|358400682|gb|EHK50008.1| hypothetical protein TRIATDRAFT_212446 [Trichoderma atroviride IMI
206040]
Length = 1080
Score = 180 bits (456), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 166/322 (51%), Gaps = 59/322 (18%)
Query: 1898 IVSAVSCDEMYVDCSQLL-----------QELSLTPLQ-----FASYLRETIAKETGCTC 1941
IV +VS DE VD + ++ +E SL Q A LR I +ETGC
Sbjct: 404 IVQSVSIDEALVDVTDIILKAVESHGIGVEEGSLWKEQQKVDEIALSLRNKIKEETGCAV 463
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G+N LQA++A +KAKP GQFHL P+ + + + ++ + LPGV +S+ KL LG +
Sbjct: 464 SVGIGANILQAKVALRKAKPAGQFHLKPEQVLEVIGDLKVEQLPGVAYSIGGKLEDLGVK 523
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
DL+++ RL + +G K L + RG D E+ + RKSVSAEVN+GIRF +
Sbjct: 524 FVKDLRDVPKDRLVSILGPKTSDKLNDYARGIDRSEVGEQPPRKSVSAEVNWGIRFISQA 583
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
E E F+ L E+EKRL ++KG+ +T+K+M R+ +AP + +K LGHG CD KS++
Sbjct: 584 EAEEFVYNLCKELEKRLVNEQVKGRNLTMKIMRRALDAPLDPTKHLGHGKCDSFNKSAT- 642
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
G DY T I KE + I
Sbjct: 643 ----------------------------FGVATHDYQT--------------IGKEAVSI 660
Query: 2182 VNKLKVDPVELRGIGIQVSKLE 2203
+ + P +LRGIG+Q++KLE
Sbjct: 661 LRSFRFSPGDLRGIGVQMTKLE 682
Score = 162 bits (411), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 128/433 (29%), Positives = 202/433 (46%), Gaps = 79/433 (18%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G Y KK KL+ ++ A+SD + IF+G+ VNGYT+ P L
Sbjct: 38 GDYFRRKKIKLQNLDADIRASSD-KPPIFKGIVAHVNGYTQ-----------PPLHVLHH 85
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHK 1435
++ HGG + Y S+T THII +NL K + +I+KP WIVDSI AGKLL
Sbjct: 86 DIVQHGGGFLQYLDSKTMATHIITANLTLKKAAEFS-RYRIVKPAWIVDSIKAGKLLPWT 144
Query: 1436 KYLLYTGTDAKPLTKL-------------LQKSYFENTEAPCCSKSLVETSSHTSTVSDS 1482
Y + T + ++ + +++SY E TE + ++ S +S
Sbjct: 145 DYRVITESPSQKVLMFGNSGGLTQTSPSPVRRSYKEQTENSFYTDQ-IKAESQIQLMSPI 203
Query: 1483 VDNTEESKSEAVNSEESKSEAANPIESKQTVKTKESKLETVN---ISAPKPQASSTKNAS 1539
+D + + V SE + + + K E N +S P+ + SST +
Sbjct: 204 LDKSPVPSRQQVESEAQLAPNPASLLDPSKIPPKHMTSEEHNAWLLSDPRIRQSST---A 260
Query: 1540 NEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDL 1599
N DFL +FY++SRLHHLST + K ++++ + G++ +
Sbjct: 261 NPDFLKQFYSESRLHHLSTWKASLK-----------------SSMQRLASEKGLSNQKKT 303
Query: 1600 EETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDR 1659
+ S IMH+D D FF +V ++ HPE D+P VAH G S++
Sbjct: 304 TRSGSRR--------YIMHVDFDSFFCAVSLKRHPEYLDKPCVVAHSPGAGSEIA----- 350
Query: 1660 QAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNL 1719
+ N + RE+G+ NGM++ AL+ CP+LK++PYDF Y+EVS Y
Sbjct: 351 ----------SCNYVA---REFGVKNGMWMKRALELCPDLKVLPYDFPAYEEVSRQFYGA 397
Query: 1720 IASLTLNIEAVSL 1732
I S+ +++VS+
Sbjct: 398 IISVGGIVQSVSI 410
Score = 47.4 bits (111), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 78/168 (46%), Gaps = 27/168 (16%)
Query: 1737 SFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQD----IICADSHTLVRTPSPSPI 1792
+FL LPED+R+EV+ D R+ +L+ + PL++ + ++ P P+
Sbjct: 920 AFLAELPEDVRREVIADHRRR--LLALQSGLEIPLSKSHQETSLLPGGQQTIQFPMLPPV 977
Query: 1793 LDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQ---PEPSDIEMFSEYLSNLV-EE 1848
+ S S+ SL E++ M+ W +++ P D+++ YL ++ EE
Sbjct: 978 ISFSGSV------------TSLPEIKDMVDAWHSQTRKAGPHKRDVDVLERYLVKVIKEE 1025
Query: 1849 RHLNPIVILLRFL-----RRHVGKKESTVWAEAYQEMLSCVQSAMKHK 1891
R L+ V L+++L + V + W A + +Q+A++ +
Sbjct: 1026 RDLSKAVALIKWLSVVVDQDGVDSRGRRAWKLAVSGIKVAMQAAVEER 1073
Score = 42.7 bits (99), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 1179 ISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQLIS 1226
+S P+ + SST +N DFL +FY++SRLHHLST + K + +L S
Sbjct: 249 LSDPRIRQSST---ANPDFLKQFYSESRLHHLSTWKASLKSSMQRLAS 293
>gi|238601296|ref|XP_002395374.1| hypothetical protein MPER_04583 [Moniliophthora perniciosa FA553]
gi|215465994|gb|EEB96304.1| hypothetical protein MPER_04583 [Moniliophthora perniciosa FA553]
Length = 290
Score = 180 bits (456), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/241 (41%), Positives = 138/241 (57%), Gaps = 18/241 (7%)
Query: 1899 VSAVSCDEMYVDCSQLLQEL----------------SLTPLQ-FASYLRETIAKETGCTC 1941
+ AVS DE +D + ++ L S P + A +R + K TGC
Sbjct: 7 LQAVSVDEALIDVTSTVERLRTKGNAEIDPFSEKASSFDPAKDLADSIRARVKKATGCEV 66
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFK-LNSLGA 2000
S G N L ARLATK+AKP G FHL PQ + F+ + +SDL G GHS + L+ LGA
Sbjct: 67 SIGVAHNILLARLATKRAKPAGSFHLMPQDVEAFLQPLDISDLHGFGHSAKQRALDKLGA 126
Query: 2001 QTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNN 2060
G+L S L + +G G TLY RG D+++L + +RKSVS ++NYGIRF+ N
Sbjct: 127 TKLGELALKSKSVLCDALGKTTGETLYNAIRGIDERKLESDKKRKSVSCDINYGIRFETN 186
Query: 2061 QEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSS 2120
++E F+ Q+A EV +R+ E+++ G+ ITLK+M R AP E KFLGHG CD K +S
Sbjct: 187 VQVEAFIYQMAAEVSRRMNEIQVLGRSITLKIMKRDPTAPVEPPKFLGHGACDVSNKQTS 246
Query: 2121 L 2121
L
Sbjct: 247 L 247
>gi|312069960|ref|XP_003137925.1| ImpB/MucB/SamB family protein [Loa loa]
gi|307766911|gb|EFO26145.1| ImpB/MucB/SamB family protein [Loa loa]
Length = 748
Score = 179 bits (455), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 120/357 (33%), Positives = 176/357 (49%), Gaps = 62/357 (17%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQ-FASYLRETIAKETGCTCSTGFGSNKLQARLATK 1957
+ AVSCDEMYVD L +E+ + + S +R I +TGC S G G+ L AR+AT+
Sbjct: 321 IRAVSCDEMYVDLETLCKEMHIADVMGIISVIRSEILTKTGCNASVGIGNTMLIARIATR 380
Query: 1958 KAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL-NSLG-AQTCGDLQNISLKRLQ 2015
AKPNGQF + I + + +S LPG+G+++ KL N+ G C DLQ + + RLQ
Sbjct: 381 HAKPNGQFMIKLGDIDELIRKEKISSLPGIGYNICAKLRNAFGEMNLCEDLQKVPIDRLQ 440
Query: 2016 NEVGNKNGLTLYKHCRGEDDKELTFEHQ--RKSVSAEVNYGIRFQNNQEMETFLKQLAGE 2073
N +G K G +Y CRG D KE F + RKS+S ++NYGIRF+ E+ FL ++ E
Sbjct: 441 NLLGEKIGTQIYNMCRGVD-KERNFLEKIIRKSISCDINYGIRFKKEDEVMEFLGKICSE 499
Query: 2074 VEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYF 2133
+EK+L +M ITLKL++R+ +AP K+LG G CD +T+++
Sbjct: 500 LEKKLHIARMTASTITLKLLIRAPDAPVITEKYLGCGRCDVVTRTAH------------- 546
Query: 2134 LLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPV--E 2191
VR A A ++A +++K ++PV +
Sbjct: 547 ---VRDATANNAVLH--------------------AEAKKLMK---------AINPVICD 574
Query: 2192 LRGIGIQVSKLEHQSKTLA---------TIDTFFTNKGKPPDQLNNPRPGPSNSTIT 2239
LRGIGIQ++ L K L T+ FF K + + G S I
Sbjct: 575 LRGIGIQLTHLTEIPKVLINDEQPINRNTLTQFFAVKSRGQQHVIGKNEGKSEEDIA 631
Score = 118 bits (296), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 107/213 (50%), Gaps = 31/213 (14%)
Query: 1519 KLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVF 1578
+L + S+PK + +T A++ +F+ FY +SRLH +ST+ K YVNELRE F
Sbjct: 144 RLAVGSYSSPK-EGCATSAANDPNFVSNFYERSRLHLISTLAQEMKHYVNELRENQTDNF 202
Query: 1579 RGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQD 1638
+ L D+D NP P+ I H+D+DCFFVSV +R PEL
Sbjct: 203 PS-------RVHLQHLIDKDFA-----NP----PKETICHVDLDCFFVSVALRTRPELVG 246
Query: 1639 EPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPN 1698
+PVA+ H +G G+ A R G+ NG F+ A K CP+
Sbjct: 247 KPVAITHSRGTEGA---GMSEIAS-----------CSYEARAQGVRNGCFIKDARKVCPD 292
Query: 1699 LKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
L +PY F Y+++S +Y++++ T NI AVS
Sbjct: 293 LICLPYQFNDYRQISREIYSILSGYTHNIRAVS 325
Score = 93.2 bits (230), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 70/121 (57%), Gaps = 12/121 (9%)
Query: 1321 YMEAKKRKLEEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMM 1380
YM KK KL+ Q + + IF+G++IFVNGYT P A EL+ L+
Sbjct: 23 YMATKKAKLQYQVNVLDKHECISCIFKGISIFVNGYTD-----------PPAAELRKLIH 71
Query: 1381 LHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYLL 1439
+HGG +H +Y+ TT+ +A++L K+KKL+ +KII P W+ DS+ AG L YLL
Sbjct: 72 MHGGEFHIYYKHGTTTYTVATHLAAGKVKKLRKEEKIIHPRWLTDSVRAGIRLHEDDYLL 131
Query: 1440 Y 1440
Y
Sbjct: 132 Y 132
Score = 43.1 bits (100), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 1180 SAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQLISLQQD 1230
S+PK + +T A++ +F+ FY +SRLH +ST+ K YVN+L Q D
Sbjct: 151 SSPK-EGCATSAANDPNFVSNFYERSRLHLISTLAQEMKHYVNELRENQTD 200
>gi|403301385|ref|XP_003941371.1| PREDICTED: DNA repair protein REV1 [Saimiri boliviensis boliviensis]
Length = 1220
Score = 179 bits (455), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/192 (47%), Positives = 124/192 (64%), Gaps = 4/192 (2%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E V M +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 545 AYKE----VARTMYETLASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEIKD 600
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVG S+ KL
Sbjct: 601 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGRSMESKL 660
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 661 ASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 720
Query: 2056 RFQNNQEMETFL 2067
RF E +
Sbjct: 721 RFTQFHTTEVLV 732
Score = 152 bits (383), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 126/230 (54%), Gaps = 42/230 (18%)
Query: 1539 SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT---SLGITE 1595
S+ +F+ FY++SRLHH+S ++VN L+ + +G+F G E ++K KT +L +T+
Sbjct: 344 SDCNFISNFYSRSRLHHISMWKCELTEFVNTLQRQSNGIFPGREKLKKMKTGRSALVVTD 403
Query: 1596 DEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS-SKVR 1654
D+ + ++P + IMH+DMDCFFVSVGIR+ P+L+ +PVAV +G + +R
Sbjct: 404 TGDM--SVLNSP---RHQSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLR 458
Query: 1655 EGVDRQAEFDIYRQRTMNRMGLN---------------------------------TREY 1681
G + Q E+ Y+ + + + R+
Sbjct: 459 PGANPQLEWQYYQNKILKGKAADIPDSSMWENPDSGQINGIDSVLSKAEIASCSYEARQV 518
Query: 1682 GLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
G+ NGMF GHA + CPNL+ VPYDF YKEV+ +Y +AS T NIEAVS
Sbjct: 519 GIKNGMFFGHAKQLCPNLQAVPYDFHAYKEVARTMYETLASYTHNIEAVS 568
Score = 138 bits (348), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 90/129 (69%), Gaps = 16/129 (12%)
Query: 1317 KKGGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSAE 1373
K GGYM AK +KLEEQF +A G IF GVAI+VNGYT PSAE
Sbjct: 17 KWGGYMAAKVQKLEEQFRSDAAMQKDGSSSTIFSGVAIYVNGYTD-----------PSAE 65
Query: 1374 ELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL 1432
EL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+LL
Sbjct: 66 ELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRLL 124
Query: 1433 DHKKYLLYT 1441
+ Y LYT
Sbjct: 125 SYIPYQLYT 133
Score = 49.7 bits (117), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+L+EW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1128 LAGAVEFNDVKTLLKEWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1187
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1188 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1219
>gi|392596271|gb|EIW85594.1| DNA repair protein [Coniophora puteana RWD-64-598 SS2]
Length = 1302
Score = 179 bits (455), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 113/323 (34%), Positives = 161/323 (49%), Gaps = 54/323 (16%)
Query: 1899 VSAVSCDEMYVDCSQLLQEL------SLTP--------LQFASYLRETIAKETGCTCSTG 1944
+ AVS DE VD S + L S P + A +R + + T C S G
Sbjct: 561 LQAVSVDEALVDVSTAVATLRGDLTRSGAPGSATRDYAKELAETIRSKVRRLTDCEVSVG 620
Query: 1945 FGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNS-LGAQTC 2003
G N L ARLAT++AKP G FHL +S+++ + + DL G G+ L K LGA
Sbjct: 621 IGENILLARLATRRAKPAGSFHLHATDVSEYLAPLDIRDLHGFGYHLRQKAQQKLGATDL 680
Query: 2004 GDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEM 2063
G L S +L +G G LYK RG D++ L + RKSVS ++NYGIRFQ+ Q+
Sbjct: 681 GTLMKKSKGQLCAALGPGTGEVLYKALRGVDERPLESDKPRKSVSCDINYGIRFQDVQQA 740
Query: 2064 ETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPI 2123
E F++ +A EV RL+ + M+G+ +TLK+M R AP EA KFLGHG+C+ K + L
Sbjct: 741 EAFIRNMAVEVSHRLDAINMRGRSLTLKIMKRDPSAPVEAPKFLGHGLCETFNKQAPL-- 798
Query: 2124 YERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVN 2183
D +++S P +I++ + L ++
Sbjct: 799 -------------------------------GDAQGRATSSPEHIAE------QALCLLK 821
Query: 2184 KLKVDPVELRGIGIQVSKLEHQS 2206
L DP ELRG+ IQ++KLE S
Sbjct: 822 ALAFDPKELRGVAIQITKLESTS 844
Score = 143 bits (360), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 139/545 (25%), Positives = 229/545 (42%), Gaps = 133/545 (24%)
Query: 1319 GGYMEAKKRKLEEQ-FELEANSDS-RGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELK 1376
G YM K+ KL+ Q ++ D + GIF G+AI+VNGYT PS + L+
Sbjct: 106 GEYMRRKRAKLQIQNAQMIGKKDGVKSGIFTGIAIYVNGYT-----------TPSVQTLR 154
Query: 1377 ALMMLHGGIYHHYESSR--TTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDH 1434
L++ +GG++ Y ++ THII +L K+++ K K+++PEWI DSI AG LL
Sbjct: 155 KLVIEYGGVFQPYLDAKGIVTHIITCSLTPAKVREFK-NMKVVRPEWITDSIKAGTLLPW 213
Query: 1435 KKYLLYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTS----------TVSDSVD 1484
+ Y+ + L K NT+ +SL ETS+ + +V
Sbjct: 214 RDYIFQASGQGRALVTQGAK----NTQQ---QRSLEETSTQAQNQPKASSTGIAGAGAVP 266
Query: 1485 NTEESKSEAVNSEESKSEAANP-IESKQTV-------------KTKESKLETVNISAPKP 1530
T SK+ E+ S A P + S+ + KT L+++ + P
Sbjct: 267 ATAASKAPKPLQREAASTRAGPSLVSRSSTSPIKTSAATAGPSKTAPQDLDSLFTTDPAR 326
Query: 1531 QASSTK--------------------------NASNEDFLGEFYNKSRLHHLSTMGSMFK 1564
+A + + ++ DF+ +Y SRLHHLS+ + +
Sbjct: 327 EADARRVPGYATHESNLNAQRVMADPAWRAAHTSAAPDFIEGYYKNSRLHHLSSWKAELR 386
Query: 1565 QYVNELREK--HDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNP--------------- 1607
V + +E+ DG G+E T ED E+T +
Sbjct: 387 SLVAQAQERAERDGFAIGLEG----------TAAEDTEDTIMADVDGAGGGGDSGGGGVS 436
Query: 1608 ---------SPS--------EPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS 1650
SPS E VIMH D D FFVS G+ P L+ PV V H +G
Sbjct: 437 MMGAELVLRSPSKKSKGKGKEIGRVIMHCDFDAFFVSAGLIERPHLRGTPVVVCHSQGGQ 496
Query: 1651 SKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYK 1710
+ + R++G+ +GM + A K CP+++ +PY+FE YK
Sbjct: 497 GGGSSTSE------------IASASYEARKFGIKSGMSLQQARKLCPDVQTMPYEFEKYK 544
Query: 1711 EVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEP 1770
++S Y ++ +++AVS+ +E+ ++ + DL+R + S ++ +
Sbjct: 545 QISLQFYTILMRYANDLQAVSV--DEALVDV--STAVATLRGDLTRSGAPGSATRDYAKE 600
Query: 1771 LAQDI 1775
LA+ I
Sbjct: 601 LAETI 605
>gi|322696927|gb|EFY88713.1| Y-family of DNA polymerase [Metarhizium acridum CQMa 102]
Length = 1139
Score = 179 bits (455), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/322 (33%), Positives = 165/322 (51%), Gaps = 59/322 (18%)
Query: 1898 IVSAVSCDEMYVDCSQLLQELSLT----------------PLQFASYLRETIAKETGCTC 1941
+V +VS DE VD + ++ S + + A+ LRE+I +TGC
Sbjct: 454 VVQSVSVDEALVDATAVVYSTSDSQGIGIDEGNVWREQEKADEIATRLRESIKAKTGCDV 513
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N LQA++A ++AKP GQF L P+ + D + + + LPGV HS+ KL LG +
Sbjct: 514 SVGIGGNILQAKVALRRAKPAGQFQLKPEDVLDIVGELTVEQLPGVSHSIGGKLEELGIK 573
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++++S +RL +G K L + RG D E+ + RKSVSAEVN+GIRF + Q
Sbjct: 574 FVKDIRDVSKERLAGALGPKTSEKLSDYARGIDRTEVGEQPPRKSVSAEVNWGIRFISQQ 633
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
E E F+ L E+EKRL +++G +T+K+M R +AP + +K LGHG CD KS++
Sbjct: 634 EAEEFVFNLCKELEKRLVNEQVRGTHLTMKIMRRCLDAPLDPAKHLGHGRCDTFNKSATF 693
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
GV + +++ I KE + I
Sbjct: 694 -------------------------------GVATHNSET------------IGKEAVSI 710
Query: 2182 VNKLKVDPVELRGIGIQVSKLE 2203
+ K P +LRG+G+Q++KLE
Sbjct: 711 LRSFKFSPGDLRGLGVQMTKLE 732
Score = 147 bits (370), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 134/491 (27%), Positives = 207/491 (42%), Gaps = 129/491 (26%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G Y KK KL+ +L A SD + IF+G+ + GYT+ P L
Sbjct: 38 GDYFRRKKIKLQNLDADLRAASD-KPQIFKGIVAHITGYTQ-----------PPLHVLHR 85
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHK 1435
++ HGG + Y S+T THIIAS LP K +I+KP WIVDS++AGKL+
Sbjct: 86 EIVEHGGGFLQYLDSKTMATHIIASTLPPKKSVDFG-RYRIVKPAWIVDSVAAGKLMPWG 144
Query: 1436 KYLLYTGTDAKPLTKLL---------------QKSYFENTE-----------APCCSKSL 1469
Y + D P K+L ++ Y E T+ S+SL
Sbjct: 145 DYRVL---DEGPKQKVLKFDDERGMTQASPDARRGYKEQTDNSFYTSQFKSSTTIPSQSL 201
Query: 1470 VETSSHTSTVSDS----VDNTEESKSEAVNS--EESKSEAANPIESKQTVKTK------- 1516
+ + T T S N ++ ++ S +S + IES+ V
Sbjct: 202 SQFAEETQTPSKPSAPLAANEQQKPADRCQSLISSPQSYPSRSIESQGVVTPTRYDTPNH 261
Query: 1517 ------ESKLETVNISAPKPQASSTK--------------------NASNEDFLGEFYNK 1550
E + VN +P P A K + +N +FL +FY++
Sbjct: 262 KAMGPPEQRPAVVNAVSPSPDAEPAKEMTSEEHNAWLLSDPRLRKSSTANPEFLKQFYSE 321
Query: 1551 SRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPS 1610
SRLHHLST + K A+++ G+T+ + F P
Sbjct: 322 SRLHHLSTWKANLKS-----------------AMQRLAAEKGLTQ-----KKFKKRPGAR 359
Query: 1611 EPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRT 1670
IMH+D D FF +V ++ HPE D+P VAH G S++
Sbjct: 360 G---YIMHVDFDSFFCAVSLKKHPEYVDKPTVVAHSSGPGSEIAS--------------- 401
Query: 1671 MNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAV 1730
R++G+ NGM++ A + CP+LK++PYDF Y+E S Y+ I S+ +++V
Sbjct: 402 ---CNYPARKFGVKNGMWMKRATELCPDLKVLPYDFPAYEEASRLFYDSIMSIGGVVQSV 458
Query: 1731 SLYTNESFLNA 1741
S+ +E+ ++A
Sbjct: 459 SV--DEALVDA 467
Score = 63.9 bits (154), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 83/169 (49%), Gaps = 28/169 (16%)
Query: 1738 FLNALPEDIRQEVLDDLSRQQSVL-----SREQNTTEPLAQDIICADSHTLVRTPSPSPI 1792
FL LPED+R+EV+ D R++ L + + P + ++ ++ P +
Sbjct: 977 FLAELPEDVRKEVVADHRRRRMALRSGLDAPPRRHLTPDTESVLPGGQRKIIFPAPPRKV 1036
Query: 1793 LDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQ---PEPSDIEMFSEYLSNLV-EE 1848
S+ + T +E++ ML W ++Q P D+E+F +YL +V EE
Sbjct: 1037 AFASSGVTST------------REVKDMLDAWHTQTQHDGPHSDDVEVFGKYLQKVVKEE 1084
Query: 1849 RHLNPIVILLRFLRRHV------GKKESTVWAEAYQEMLSCVQSAMKHK 1891
R L +VIL+++L V GK + + W EA +++ S VQ+A+K +
Sbjct: 1085 RDLEKVVILIKWLHVLVEQDGSPGKGQES-WREAVKQVESAVQAAVKER 1132
>gi|167526796|ref|XP_001747731.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773835|gb|EDQ87471.1| predicted protein [Monosiga brevicollis MX1]
Length = 1412
Score = 179 bits (454), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 144/472 (30%), Positives = 224/472 (47%), Gaps = 91/472 (19%)
Query: 1321 YMEAKKRKLEEQFE--LEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKAL 1378
YM KK KL++Q+ + A SD IFQG+ +++NG T P AE+L+ L
Sbjct: 57 YMSMKKSKLQDQYHQAVPAKSD----IFQGLFMYINGRTD-----------PPAEDLRTL 101
Query: 1379 MMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY 1437
++ HGG + +Y + TH+IA+NL KIK LK KI+ P+W++DS+ AG L Y
Sbjct: 102 ILEHGGSHTLYYSITHVTHVIATNLCGAKIKDLK-NKKIVTPQWLLDSVQAGARLPIGPY 160
Query: 1438 LLY--TGTDAKPL------------TKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSV 1483
L+Y G + + L L + + TE P LV +T+S
Sbjct: 161 LVYHREGINQQRLDFAAAPTTAKTTLHGLHEDPNQPTE-PSSPPPLVGVVCEPTTISPET 219
Query: 1484 DNTEESKSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDF 1543
+ S S + + + A P+ + E K + P + +N +F
Sbjct: 220 -VPQGSNSPSPPPRLAPTSPAPPVAAATHTDANEPKGGELRRYGP------MVSGNNPNF 272
Query: 1544 LGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETF 1603
+ ++Y +SRLHHLST G+ K YV L+ + + + A F
Sbjct: 273 IEQYYAQSRLHHLSTSGAEAKAYVRRLQREAVAAGQQLTA-------------------F 313
Query: 1604 SDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAH-GKGNSSKVREGVDRQAE 1662
S + +P VI+HID+D FFVS+ +R ELQD+PVA+AH G+ SS++
Sbjct: 314 STDYTPGR---VIVHIDLDAFFVSIALRERQELQDQPVAIAHSGREGSSEI--------- 361
Query: 1663 FDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIAS 1722
+ R++G+ NGM + AL CP+L+ +PY+F+ YK S Y L+ +
Sbjct: 362 ---------SSCNYPARQFGIRNGMSMRRALAACPHLQTLPYEFDKYKLASQAFYRLLTA 412
Query: 1723 LTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQ--QSVLSREQNTTEPLA 1772
TL I+AVS+ +E++L D+ V D S Q+V R+ PL+
Sbjct: 413 RTLRIQAVSM--DEAYL-----DLTGLVRPDYSPHLWQAVQQRQHEGHPPLS 457
Score = 152 bits (385), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 128/257 (49%), Gaps = 34/257 (13%)
Query: 1899 VSAVSCDEMYVDCSQLLQ--------------------ELSLTPLQ-------------F 1925
+ AVS DE Y+D + L++ LS PLQ F
Sbjct: 417 IQAVSMDEAYLDLTGLVRPDYSPHLWQAVQQRQHEGHPPLSPAPLQEASLPVPTQSATEF 476
Query: 1926 ASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLP 1985
+ LR IA+E G S G G N L ARL T+ AKPNG + + F+ L DLP
Sbjct: 477 VAELRTAIAEELGIAASAGIGPNVLLARLCTRLAKPNGLYSYAEANVERFIDQTALKDLP 536
Query: 1986 GVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRK 2045
GVG +L ++G +C DL+ + L RLQ + G+KNG LY CRG D L K
Sbjct: 537 GVGWCTAGRLTTMGIASCADLRALPLDRLQADFGHKNGQALYNACRGIDPSPLKDNAPPK 596
Query: 2046 SVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASK 2105
SVS E+ +G+RF + +++TF+ L EV RLE V +TLK+ R +A + K
Sbjct: 597 SVSVEITWGVRFDKDAQVDTFVSNLCREVCSRLEAVGQLATRVTLKIKQRKPDA-GDPHK 655
Query: 2106 FLGHGVCDYITKSSSLP 2122
LGHG CD +S++LP
Sbjct: 656 RLGHGPCDDRNRSTALP 672
>gi|422934424|ref|YP_007004385.1| DNA gyrase subunit B [Enterobacteria phage ime09]
gi|339791207|gb|AEK12264.1| DNA gyrase subunit B [Enterobacteria phage ime09]
Length = 605
Score = 179 bits (454), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 172/609 (28%), Positives = 270/609 (44%), Gaps = 104/609 (17%)
Query: 40 SQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNK 99
S +EHI R YIGS +L + + YVPGL K+ DEI+ N+ D
Sbjct: 10 SDIEHIKKRSGMYIGSSANEMHERFLFGK------WESVQYVPGLVKLIDEIIDNSVDEG 63
Query: 100 QRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEED 159
R KI V + N ++V +NG+GIP K PT +
Sbjct: 64 IRTKFKFANKINVTIKNNQVTVEDNGRGIPQAMVK-----TPT---------------GE 103
Query: 160 KVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFK 219
++ G P + N+ D++++VTGG NG G+ L NIFS FV ET +
Sbjct: 104 EIPG--PVAAWTIPKAGGNFGDDKERVTGGMNGVGSSLTNIFSVMFVGETGDGQ------ 155
Query: 220 QVWKDNMSKVTSPEIKSGSKDDF------TKITFTPDLTKFKMTSLDKDMVDLITRRAYD 273
+N+ S +++ S +D T++TF PD F+ L + +D+ R
Sbjct: 156 ----NNIVVRCSNGMENKSWEDIPGKWKGTRVTFIPDFMSFETNELSQVYLDITLDRLQT 211
Query: 274 AAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDR 333
A D++ NG+K+ NF+ Y + Y D I+ E N +A+ S
Sbjct: 212 LAVVYPDIQFTFNGKKVQ-GNFKKYARQY--------DEHAIVQEQENC--SIAVGRSPD 260
Query: 334 GFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNK-DLG------CTIIMLFGNK 386
GF+Q+++VN+I T GG H+D V+D I + +I +K+K K D+ C I++F
Sbjct: 261 GFRQLTYVNNIHTKNGGHHIDCVMDDICEDLIPQIKRKFKIDVTKARVKECLTIVMFVRD 320
Query: 387 FNNVKNNKLQMAKTLIDIGVRLGGMALKPF-QVKNHIW---------IFINCLIVNPTFD 436
N++ + Q + L PF ++++HI I N I+ P +
Sbjct: 321 MKNMRFDS-QTKERLT-----------SPFGEIRSHIQLDAKKISRAILNNEAILMPIIE 368
Query: 437 SQTKENM-------TLQKGSFGSTCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSG 489
+ + T V K AN G +D TL LTEGDSA +
Sbjct: 369 AALARKLAAEKAAETKAAKKASKAKVHKHIKANLCG--KDVDTTLFLTEGDSAIGYLID- 425
Query: 490 LGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLR 549
V ++ +G +PLRGK+LN ++ +L+N E+ ++ I GL +K + L
Sbjct: 426 --VRDKELHGGYPLRGKVLNSWGMSYADMLKNKELFDICAITGLVLGEK------AENLN 477
Query: 550 YGRLMIMTDQDQDG-SHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYS 608
Y + IMTD D DG I ++ F NWP L + TP+I A +++ FY+
Sbjct: 478 YHNIAIMTDADHDGLGSIYPSLLGFF-SNWPELFEQGRIRFVKTPVIIAQVGKKQEWFYT 536
Query: 609 LPEFEEWKE 617
+ E+E K+
Sbjct: 537 VAEYESAKD 545
>gi|426200660|gb|EKV50584.1| hypothetical protein AGABI2DRAFT_149048 [Agaricus bisporus var.
bisporus H97]
Length = 1170
Score = 179 bits (454), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/338 (34%), Positives = 172/338 (50%), Gaps = 49/338 (14%)
Query: 1924 QFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSD 1983
+ A +R+ I + T C S G N L ARLAT++AKP H+ P+ +S + + +SD
Sbjct: 520 EVAESIRDAIRETTSCEVSIGIAHNILLARLATRRAKPAKSCHIFPEEVSSLLAPLEISD 579
Query: 1984 LPGVGHSLLFK-LNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEH 2042
L G G++ K L LG G+L + S + L + +G G TLY RG D+++L
Sbjct: 580 LHGFGYNSKQKALEKLGTSKLGELLDKSKRTLCDALGKTTGETLYNAIRGIDERQLESSK 639
Query: 2043 QRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPRE 2102
+RKSVS E+NYGIRF+NN++ E F+ Q++ EV++RL+EVKM G+ IT+K+M R AP E
Sbjct: 640 ERKSVSCEINYGIRFENNEQAEKFIYQMSEEVKRRLDEVKMLGRLITMKIMKRKQNAPIE 699
Query: 2103 ASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSS 2162
KFLGHG CD K LV K +G
Sbjct: 700 PPKFLGHGTCDTFNKQGK---------------LVGPGGNAVNDDKIIGE---------- 734
Query: 2163 SLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSKLE------HQSKTLATIDTFF 2216
A ++LK F DP ELRG+G+ + KLE ++ + ++ F
Sbjct: 735 -------HAWRLLKSFNF-------DPKELRGLGVHIQKLEPARSGSTHAQAVQSVLPFK 780
Query: 2217 TNKGKPPDQLNNPRPGPSNSTITPGPSN--STLPPGPS 2252
+G P ++ ++P+ G ++ TPGP + L P PS
Sbjct: 781 KAEGLPKERFSSPQKGQRDAP-TPGPDDMWQDLQPPPS 817
Score = 167 bits (423), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 129/435 (29%), Positives = 209/435 (48%), Gaps = 61/435 (14%)
Query: 1319 GGYMEAKKRKLEEQFE-LEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G YM K+ KL+ Q + LE ++ GGIF+GVAI+VNG+T+ PS ++L+
Sbjct: 93 GEYMRRKRAKLQIQNQALEDKANISGGIFEGVAIYVNGWTR-----------PSIQDLRK 141
Query: 1378 LMMLHGGIYHHYESSR--TTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHK 1435
L++ HGG++ Y + THII +L KIK+ K K++KPEWI DS++ G LL K
Sbjct: 142 LIVEHGGVFQPYLDRKNIVTHIITCSLTPAKIKEFK-SMKVVKPEWITDSVADGVLLSWK 200
Query: 1436 KYLLYTGTDAKP-LTKLLQKSYFENTEAP----CCSKSLVETSSHTSTVSDSVDNTE-ES 1489
Y+ + K +++ N+ P S S+ S ++D + T+ +
Sbjct: 201 DYIFKPNERIESDQGKSIKQQTITNSTLPRHHISVSPRKKGDSAQDSDITDPLYTTDPAT 260
Query: 1490 KSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYN 1549
+++A + NP +K+ + E + +I AP DF+ +Y
Sbjct: 261 EADARRVPHYAPSSPNP-NAKRVMANPEWRKAHTSI-AP-------------DFIEGYYK 305
Query: 1550 KSRLHHLSTMGSMFKQYVNELREKHDG------------VFRGIEAIRKWKTSLGITEDE 1597
SRLHHLST S + V E +E+ + + G+ ++R L + +
Sbjct: 306 NSRLHHLSTWKSELRSLVMEAQERVEATMSSTPDAMPKSILNGV-SMRGQHFKLATSPRK 364
Query: 1598 DLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGV 1657
+ + S + + VIMH D DCFFVS G+ PEL+ +PV V H +G + G
Sbjct: 365 WKGKGKEKSGSGDQNDRVIMHCDFDCFFVSAGLVSRPELKGKPVVVCHSQG----AQGGE 420
Query: 1658 DRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLY 1717
+E + R++G+ NGM + A K C + +PY+FE YKE S Y
Sbjct: 421 SSTSE--------IASCSYEARDFGIRNGMSLQQARKLCAAVITIPYEFERYKEFSLKFY 472
Query: 1718 NLIASLTLNIEAVSL 1732
++ S +++AVS+
Sbjct: 473 TVLLSFADDLQAVSV 487
>gi|322708675|gb|EFZ00252.1| Y-family of DNA polymerase [Metarhizium anisopliae ARSEF 23]
Length = 1139
Score = 178 bits (452), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/322 (33%), Positives = 164/322 (50%), Gaps = 59/322 (18%)
Query: 1898 IVSAVSCDEMYVDCSQLLQELSLT----------------PLQFASYLRETIAKETGCTC 1941
+V +VS DE +D + ++ S + + A+ LRE+I +TGC
Sbjct: 454 VVQSVSVDEALIDATAVVYSTSDSQGIGIDEGNVWREQEKADEIAARLRESIKTKTGCDV 513
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N LQA++A ++AKP GQF L P+ + D + + + LPGV HS+ KL LG +
Sbjct: 514 SVGIGGNILQAKVALRRAKPAGQFQLKPESVLDIVGELTVEQLPGVSHSIGGKLEELGIK 573
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
D++ +S +RL +G K L + RG D E+ + RKSVSAEVN+GIRF + Q
Sbjct: 574 FVKDVRTVSKERLAGALGPKTSEKLSDYARGIDRTEVGEQPPRKSVSAEVNWGIRFISQQ 633
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
E E F+ L E+EKRL +++G +T+K+M R +AP + +K LGHG CD KS++
Sbjct: 634 EAEEFVFNLCKELEKRLVNEQVRGTHLTMKIMRRCLDAPLDPAKHLGHGRCDTFNKSATF 693
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
GV + +++ I KE + I
Sbjct: 694 -------------------------------GVATHNSET------------IGKEAVAI 710
Query: 2182 VNKLKVDPVELRGIGIQVSKLE 2203
+ K P +LRG+G+Q++KLE
Sbjct: 711 LRSFKFSPGDLRGLGVQMTKLE 732
Score = 148 bits (373), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 130/491 (26%), Positives = 203/491 (41%), Gaps = 129/491 (26%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G Y KK KL+ +L A SD + IF+G+ + GYT+ P L
Sbjct: 38 GDYFRRKKIKLQNLDADLRAASD-KPQIFKGIVAHITGYTQ-----------PPLHVLHR 85
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHK 1435
++ HGG + Y S+T THIIAS LP K +I+KP WIVDS++AGKL+
Sbjct: 86 EIVEHGGGFIQYLDSKTMATHIIASTLPPKKSVDFG-RYRIVKPAWIVDSVAAGKLMPWG 144
Query: 1436 KYLLYTGTDAKPLTKLL---------------QKSYFENT-------------------- 1460
Y + D P K+L ++ Y E T
Sbjct: 145 DYRVL---DEGPRQKVLRFDDERGMTQASPEARRGYKEQTDNSFYTSQFKSSTTDPSQSL 201
Query: 1461 -----EAPCCSKSLVETSSH-----TSTVSDSVDNTEESKSEAVNSEESKSEAANPIESK 1510
E P SK V +++ T V ++E ++ S+ + + ++
Sbjct: 202 SHFAEETPTPSKPPVSLAANEQQKPTDRCQSLVTSSESYLCRSIESQGVVTPTRHDTQNH 261
Query: 1511 QTVKTKESKLETVNISAPKPQASSTK--------------------NASNEDFLGEFYNK 1550
+ + E VN +P P K + +N +FL +FY++
Sbjct: 262 KVMGPPEQSRAVVNARSPSPVVEPAKEMTSEEHNAWLLSDPRLRKSSTANPEFLKQFYSE 321
Query: 1551 SRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPS 1610
SRLHHLST + K A+++ G+T + F P
Sbjct: 322 SRLHHLSTWKASLK-----------------SAMQRLAAEKGLT-----QRMFKKKPGAR 359
Query: 1611 EPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRT 1670
IMH+D D FF +V ++ HPE D+P VAH G S++
Sbjct: 360 G---YIMHVDFDSFFCAVSLKKHPEYADKPTVVAHSSGPGSEIAS--------------- 401
Query: 1671 MNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAV 1730
RE+G+ NGM++ A + CP+LK++PYDF Y+E S Y+ I S+ +++V
Sbjct: 402 ---CNYPAREFGVKNGMWMKRATELCPDLKVLPYDFPAYEEASRLFYDSILSIGGVVQSV 458
Query: 1731 SLYTNESFLNA 1741
S+ +E+ ++A
Sbjct: 459 SV--DEALIDA 467
Score = 60.5 bits (145), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 32/171 (18%)
Query: 1738 FLNALPEDIRQEVLDDLSRQQSVLS-------REQNTTEPLAQDIICADSHTLVRTPSPS 1790
FL LPED+R+EV+ D R++ L R T++ + + + P+P
Sbjct: 977 FLAELPEDVRKEVVADHRRRRMALRSGLDAPPRRHTTSD---TESVLPGGQRKIAFPAPP 1033
Query: 1791 PILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQ---PEPSDIEMFSEYLSNLV- 1846
+ ++S + +T +E++ ML W +++ P +D+E+F +YL +V
Sbjct: 1034 RKVAFASSGVTST-----------REVKDMLDAWHTQTRHDGPHSNDVEVFDKYLQKVVK 1082
Query: 1847 EERHLNPIVILLRFLRRHV------GKKESTVWAEAYQEMLSCVQSAMKHK 1891
EER L +VIL+++L V G+ + + W EA +++ S VQ+A+K +
Sbjct: 1083 EERDLEKVVILIKWLHILVEQDGSPGRGQES-WREAAKQVESAVQAAVKER 1132
>gi|328858138|gb|EGG07252.1| hypothetical protein MELLADRAFT_35660 [Melampsora larici-populina
98AG31]
Length = 784
Score = 178 bits (452), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 130/388 (33%), Positives = 195/388 (50%), Gaps = 72/388 (18%)
Query: 1899 VSAVSCDEMYVD--------CSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKL 1950
+ AVS DE +D CS QE++LT L A+ +R I TGC S G N L
Sbjct: 416 LQAVSVDECLIDISSKKPISCSMETQEIALTKL--ANEIRTKIRSSTGCEASIGISHNIL 473
Query: 1951 QARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL-NSLGAQTCGDLQNI 2009
A+LATKKAKP G +HL I+ + ++ + DLPGVG + + + L I
Sbjct: 474 LAKLATKKAKPAGTYHLHGPQIAQLLGDLKIDDLPGVGWAQKADIETAFQVSNVAQLGQI 533
Query: 2010 SLKRLQNEVGNKNGLTLYKHCRGEDDKEL-TFEHQRKSVSAEVNYGIRFQN-----NQEM 2063
S+ +L + +G G TL+ + +G DD+ L + H RKSVSA VNYGIRF+N NQ+
Sbjct: 534 SVSQLIDVMGPIRGKTLHLYSKGIDDRPLKSSHHDRKSVSAVVNYGIRFKNQESGGNQQS 593
Query: 2064 ETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPI 2123
F+K+L+ EV +RL E+ ++G+ ++LK+M R+A AP E++KF+GHGVCD ++++S +
Sbjct: 594 YEFIKELSLEVSRRLVELGLRGRHLSLKIMKRAANAPIESAKFMGHGVCDELSRTSKI-- 651
Query: 2124 YERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVN 2183
P +++ I S+I +E ++
Sbjct: 652 -----------------SGPGDSA--------------------IDDGSRICEEAWKLLK 674
Query: 2184 KLKVDPVELRGIGIQVSKLEHQSKTLATIDTFFTNKGKP-----PDQLNNPRPGPSNS-- 2236
L + P +LRGIGIQ+ KLE T+ KG+ P +L + +NS
Sbjct: 675 NLNIPPEDLRGIGIQIQKLEK-----TTVGQINNTKGQSTLTFKPGKLQSSVRDLNNSPK 729
Query: 2237 ---TITPGPSNSTLPPGPSNSTLPPGPS 2261
ITP P++S P P + P S
Sbjct: 730 AVQVITPKPNHSN-NPAPCTQLIIPSSS 756
Score = 147 bits (370), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 120/421 (28%), Positives = 192/421 (45%), Gaps = 80/421 (19%)
Query: 1319 GGYMEAKKRKLEEQFELEANSD----SRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEE 1374
G YM K+ KL+ Q ++D SR G+ I VNGYT P E
Sbjct: 74 GQYMANKRLKLKVQESFLRDADGLKGSRPQFMAGLVIHVNGYT-----------TPPLSE 122
Query: 1375 LKALMMLHGGIYHHY--ESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL 1432
++ ++++HGG Y Y S THIIA+ L K ++ + K++ P W+VDS+ AG+LL
Sbjct: 123 IRKMIVVHGGTYMAYLDHKSVITHIIATALTPKKREEFRLY-KVVTPSWLVDSVEAGRLL 181
Query: 1433 DHKKYLLYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSE 1492
Y L + T K ++K + + + T TS+ T++ D
Sbjct: 182 PWSDYTLNSAT--KNISKNIMGAKYTPTPP--------LTSAPTTSSPDQ---------- 221
Query: 1493 AVNSEESKSEAANPIE-SKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKS 1551
+ SE S + P++ + ++K + + E +I NA N F+ E++ +S
Sbjct: 222 -IQSETSTNNPCGPLQDAANSIKLIDHQDEVTSI--------LDSNAPN--FIQEYFRQS 270
Query: 1552 RLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSE 1611
RLHHLST + Q V+ L ++ G G + K + DE T
Sbjct: 271 RLHHLSTWKADLLQKVSTLFDQKVGQ-TGRHVLPK-----KLIGDETDGRT--------- 315
Query: 1612 PEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTM 1671
IMH+D DCFF+S G+ P+L+ +PVAV H + N + A
Sbjct: 316 ----IMHVDFDCFFISAGLIKRPDLRGKPVAVCHAQTNQPTGQRSTSEIAS--------- 362
Query: 1672 NRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
R +G+ NG +G A + CP ++ +PYDF Y+++S YN++ S ++AVS
Sbjct: 363 --CSYEARAFGVKNGQSLGKARELCPQIQTIPYDFTLYEQISLKFYNILLSYADELQAVS 420
Query: 1732 L 1732
+
Sbjct: 421 V 421
>gi|409082792|gb|EKM83150.1| hypothetical protein AGABI1DRAFT_118512 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1175
Score = 178 bits (451), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 179/363 (49%), Gaps = 55/363 (15%)
Query: 1924 QFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSD 1983
+ A +R+ I + T C S G N L ARLAT++AKP H+ P+ +S + + +SD
Sbjct: 525 EVAESIRDAIRETTSCEVSIGIAHNILLARLATRRAKPAKSCHILPEEVSSLLAPLEISD 584
Query: 1984 LPGVGHSLLFK-LNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEH 2042
L G G++ K L LG G+L + S + L + +G G TLY RG D+++L
Sbjct: 585 LHGFGYNSKQKVLEKLGTSKLGELLDKSKRMLCDALGKTTGETLYNAIRGIDERQLESSK 644
Query: 2043 QRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPRE 2102
+RKSVS E+NYGIRF+NN++ E F+ Q++ EV++RL+EVKM G+ IT+K+M R AP E
Sbjct: 645 ERKSVSCEINYGIRFENNEQAEKFIYQMSEEVKRRLDEVKMLGRLITMKIMKRKQNAPIE 704
Query: 2103 ASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSS 2162
KFLGHG CD K K +G G D +
Sbjct: 705 PPKFLGHGTCDTFNKQ----------------------------GKLIGPG-GDAVNDDK 735
Query: 2163 SLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSKLE------HQSKTLATIDTFF 2216
+ A ++LK F DP ELRG+G+ + KLE ++ + ++ F
Sbjct: 736 ---IIGEHAWRLLKSFNF-------DPKELRGLGVHIQKLEPAGSGSTHAQAVQSVLPFK 785
Query: 2217 TNKGKPPDQLNNPRPGPSNSTITPGPSNS----TLPPGP----SNSTLPPGPSNSTLLPG 2268
+G P ++ ++P G + TPGP + PP P S + P+ +
Sbjct: 786 KAEGLPKERFSSPEKGQRGAP-TPGPDDRWQDFQPPPSPVKKSSTKNVAEEPTKPEYVDL 844
Query: 2269 PSF 2271
PSF
Sbjct: 845 PSF 847
Score = 168 bits (425), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 129/447 (28%), Positives = 210/447 (46%), Gaps = 85/447 (19%)
Query: 1319 GGYMEAKKRKLEEQFE-LEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G YM K+ KL+ Q + LE ++ GGIF+GVAI+VNG+T+ PS ++L+
Sbjct: 98 GEYMRRKRAKLQIQNQALEDKANISGGIFEGVAIYVNGWTR-----------PSIQDLRK 146
Query: 1378 LMMLHGGIYHHYESSR--TTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHK 1435
L++ HGG++ Y + THII +L KIK+ K K++KPEWI DS++ G LL K
Sbjct: 147 LIVEHGGVFQPYLDRKNIVTHIITCSLTPAKIKEFK-SMKVVKPEWITDSVADGVLLSWK 205
Query: 1436 KYLLYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSS---HTSTVS-----DSVDNTE 1487
Y+ KP ++ E+ + + + S+ H S++S DS +++
Sbjct: 206 DYIF------KPNERI------ESDQGKSIKQQTITKSTLPWHHSSISPRKKGDSAQDSD 253
Query: 1488 ESKSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEF 1547
+ ++++A + +K N P+ + DF+ +
Sbjct: 254 ITDPLYTTDPATEADARRVPHYAPSSSNPNAKRVMAN-----PEWRKAHTSIAPDFIEGY 308
Query: 1548 YNKSRLHHLSTMGSMFKQYVNELREKHDGV----------------------FRGIEAIR 1585
Y SRLHHLST S + V E +E+ + F+ + R
Sbjct: 309 YKNSRLHHLSTWKSELRSLVMEAQERVEATMSSTPEAMPKSILNGVSMRGQHFKLATSPR 368
Query: 1586 KWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAH 1645
KWK + E++ S++ + E VIMH D DCFFVS G+ PEL+ +PV V H
Sbjct: 369 KWK-------GKGKEKSGSED----QNERVIMHCDFDCFFVSAGLVSRPELKGKPVVVCH 417
Query: 1646 GKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYD 1705
+G + G +E + R++G+ NGM + A K C ++ +PY+
Sbjct: 418 SQG----AQGGESSTSE--------IASCSYEARDFGIRNGMSLQQARKLCASVITIPYE 465
Query: 1706 FEGYKEVSYCLYNLIASLTLNIEAVSL 1732
F+ YKE S Y ++ S +++AVS+
Sbjct: 466 FQRYKEFSLKFYTVLLSFADDLQAVSV 492
>gi|431808945|ref|YP_007235842.1| phage DNA topoisomerase large subunit #T4-like gp60 #T4 GC1464
[Yersinia phage phiR1-RT]
gi|398313234|emb|CCI88583.1| phage DNA topoisomerase large subunit #T4-like gp60 #T4 GC1464
[Yersinia phage phiR1-RT]
Length = 606
Score = 178 bits (451), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 177/610 (29%), Positives = 267/610 (43%), Gaps = 104/610 (17%)
Query: 40 SQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNK 99
S +EHI R YIGS ++ R ++ YVPGL K+ DEI+ N+ D
Sbjct: 10 SDIEHIKKRSGMYIGSSSNEAHERFMFGRFI------QVNYVPGLVKLIDEIIDNSVDES 63
Query: 100 QRDPKMNCIKITVNQETNTISVWNNGKGIP---VVEHKDEKMFVPTMIFGHLLTSSNYND 156
R KI V + NT+ V +NG+GIP V++ E + P +
Sbjct: 64 IRTNFKFANKIDVKIKDNTVIVEDNGRGIPQDLVIDQTGESIPGPVAAW----------- 112
Query: 157 EEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKK 216
+P N+ D+ ++ TGG NG G+ L NIFS FV ET K
Sbjct: 113 -------TIPK-------AGGNFGDDAERKTGGMNGVGSSLTNIFSVNFVGETGNG--KT 156
Query: 217 SFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
+ + M E KS + T++TFTPD F+ L + +D+ R A
Sbjct: 157 AICVNCSNGMDTKEWKETKSNWRG--TRVTFTPDFKTFETDELSQVYLDITLDRLQTLAV 214
Query: 277 STKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQ 336
D++ NG+K+ NF+ Y K + G+ V +I E AI+P GF+
Sbjct: 215 IYPDIEFKFNGKKID-GNFKKYSKQF-------GEEV-VIQETDTVSMAFAISPD--GFR 263
Query: 337 QVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLG--------CTIIMLFGNKFN 388
Q+++VN+I T GG HV+ V+D I + +I +KKK K + C +++F +
Sbjct: 264 QLTYVNNIHTKNGGHHVECVMDDICEHLIPAIKKKYKGIDVTKARIKECLTMLMFIRDMS 323
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPF-QVKNHIWIFINCL---------IVNPTFDSQ 438
N++ + Q + L PF +++NHI I + ++ P ++
Sbjct: 324 NMRFDS-QTKERLT-----------SPFGEIRNHIQIDAKKISAAILKSEELIMPIVEAA 371
Query: 439 TKENM-------TLQKGSFGSTCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLG 491
+ T V K AN G + ++ TL LTEGDSA +
Sbjct: 372 LARKLAAEKAAETKAAKKASKATVVKHIKANSYGN-DKLETTLFLTEGDSAIGYLIE--- 427
Query: 492 VVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYG 551
V R +G +PLRGK +N +ILEN E + I GL T E + L Y
Sbjct: 428 VRDRALHGGYPLRGKFMNTWGMPASKILENREAFEICAITGL------TIGEPAENLGYR 481
Query: 552 RLMIMTDQDQDGS-HIKGLIINFIHHNWPTLL---RLPFLEEFITPIIKATKAREELSFY 607
+ IMTD D DG+ I ++ F WP L R+ F++ TP+I A + + FY
Sbjct: 482 NIAIMTDADVDGTGSIYPSLLAFFTQ-WPELFEQGRIRFVK---TPVIIAQVGKAQKWFY 537
Query: 608 SLPEFEEWKE 617
LPE++ KE
Sbjct: 538 DLPEYDAVKE 547
>gi|400603147|gb|EJP70745.1| impB/mucB/samB family protein [Beauveria bassiana ARSEF 2860]
Length = 1130
Score = 178 bits (451), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 110/332 (33%), Positives = 173/332 (52%), Gaps = 59/332 (17%)
Query: 1898 IVSAVSCDEMYVDCSQLLQELSLTP---------------LQFASY-LRETIAKETGCTC 1941
+V +VS DE +D + ++ + + ++ +Y LR+ I + TGC
Sbjct: 446 VVQSVSIDEALIDATAVVYHATGSQGVGVEGGSVEREQERVEAMAYDLRQKIKELTGCNV 505
Query: 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQ 2001
S G G N LQA++A +KAKP GQ+HL P+ + D++ ++ + LPGV +S+ KL LG +
Sbjct: 506 SVGIGGNILQAKVALRKAKPAGQYHLKPEEVLDYIGDLKVEQLPGVSYSIGGKLEELGIR 565
Query: 2002 TCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
DL+ +S ++L +G K G L ++ RG D E+ + RKSVSAEV++GIRF Q
Sbjct: 566 LVKDLRQLSKEKLTAVLGPKTGEKLAEYARGIDRTEVGGQPPRKSVSAEVSWGIRFVTQQ 625
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
E E F+ L E+EKRL ++KG+ +T+K+M RS +AP + +K LGHG CD K S+
Sbjct: 626 EAEDFVINLCAELEKRLLNEQVKGRHLTVKIMRRSLDAPLDPAKHLGHGRCDTFNK--SV 683
Query: 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFI 2181
P G G+ D + I KE + +
Sbjct: 684 P---------------------------FGVGIHDAVI--------------IGKEAVAV 702
Query: 2182 VNKLKVDPVELRGIGIQVSKLEHQSKTLATID 2213
+ + P +LRG+G+Q++KLE + +A D
Sbjct: 703 LRSYRFSPGDLRGLGVQMTKLEPIKQGIAASD 734
Score = 148 bits (373), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 146/515 (28%), Positives = 220/515 (42%), Gaps = 117/515 (22%)
Query: 1319 GGYMEAKKRKLEEQ-FELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G Y KK KL+ + L A SD + IF+G+ V GYT+ P L
Sbjct: 38 GDYFRRKKIKLQNRDANLRATSD-KPQIFKGIVAHVTGYTQ-----------PPLHVLHR 85
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHK 1435
++ HGG + Y S+T THIIAS LP K +I+KP WI +SI+AGKLL
Sbjct: 86 DIVQHGGGFLQYLDSKTMATHIIASTLPPKKSVDFS-RYRIVKPAWITESITAGKLLPWG 144
Query: 1436 KY-LLYTG--------TDAKPLTK---LLQKSYFENTEAPCCSKSL----------VETS 1473
Y +L G D+K L++ + ++ Y E TE + L +
Sbjct: 145 DYRVLDEGPRQKVLKLDDSKGLSQTSPVARQGYREQTENSFYTSQLRALDPAGGGRSQAV 204
Query: 1474 SHTSTVSDSVDN----TEESKSEAVNS--------EESKSEAAN--PIESKQTVKTKESK 1519
H T S SV + E S A+ S E + S+ A P T T + K
Sbjct: 205 EHFQTPSRSVSSDAKLAERGLSSAIESNNFATPSTEMAMSDPAEFAPEADTPTKTTLQQK 264
Query: 1520 LETVNISAPKPQASST-------------------KNASNEDFLGEFYNKSRLHHLSTMG 1560
+ I P PQ ST + +N +FL +FY +SRLHHLST
Sbjct: 265 ADLAQIK-PAPQEFSTDMTPEEHNAWLLSDPRLRESSCANPNFLTKFYAESRLHHLSTWK 323
Query: 1561 SMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHID 1620
+ K ++++ T G++E + L+ PS IMH+D
Sbjct: 324 AELK-----------------SSMQRLATQKGLSE-QKLK-------MPSGSRRYIMHVD 358
Query: 1621 MDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTRE 1680
D FF +V ++ PE D+P AVAHG GN S++ R
Sbjct: 359 FDSFFCAVSLKKSPEHIDKPAAVAHGTGNGSEIAS------------------CNYPARS 400
Query: 1681 YGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLN 1740
+ + NGM++ A++ CP LK++PYDF Y+ S Y I ++ +++VS+ +E+ ++
Sbjct: 401 FNVKNGMWMKRAMELCPELKVLPYDFPAYEAASRAFYEAIMTVGGVVQSVSI--DEALID 458
Query: 1741 ALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
A + + + REQ E +A D+
Sbjct: 459 ATAVVYHATGSQGVGVEGGSVEREQERVEAMAYDL 493
Score = 47.4 bits (111), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 28/170 (16%)
Query: 1738 FLNALPEDIRQEVLDDLSR----QQSVL---SREQNTTEPLAQDIICADSHTLVRTPSPS 1790
FL LP D+R EVL D R Q+S L SR E L ++ D + P+
Sbjct: 968 FLAELPADVRSEVLADHRRRKLAQRSGLDAPSRRPAHAEALGGALL-PDRQRRIEFPARP 1026
Query: 1791 PILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQ---PEPSDIEMFSEYLSNLV- 1846
P + + S + +T E++ +L W +++ P SD+E+F +YL +V
Sbjct: 1027 PKVSFANSGVSSTG-----------EIKDLLDAWHTDTRSDGPHRSDVEVFDKYLKRVVS 1075
Query: 1847 EERHLNPIVILLRFLRRHV-----GKKESTVWAEAYQEMLSCVQSAMKHK 1891
EER + L+++L V G W + + + + +Q A++ +
Sbjct: 1076 EERDMQKATALVKWLDVLVEQDGDGGAGRDAWRKTMKGVHATLQEALRKR 1125
>gi|397134023|gb|AFO10530.1| DNA gyrase subunit B [Escherichia phage ECML-134]
Length = 605
Score = 177 bits (450), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 172/609 (28%), Positives = 269/609 (44%), Gaps = 104/609 (17%)
Query: 40 SQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNK 99
S +EHI R YIGS +L + + YVPGL K+ DEI+ N+ D
Sbjct: 10 SDIEHIKKRSGMYIGSSANEMHERFLFGK------WESVQYVPGLVKLIDEIIDNSVDEG 63
Query: 100 QRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEED 159
R KI V + N ++V +NG+GIP K PT +
Sbjct: 64 IRTKFKFANKINVTIKNNQVTVEDNGRGIPQAMVK-----TPT---------------GE 103
Query: 160 KVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFK 219
++ G P + N+ D++++VTGG NG G+ L NIFS FV ET +
Sbjct: 104 EIPG--PVAAWTIPKAGGNFGDDKERVTGGMNGVGSSLTNIFSVMFVGETGDGQ------ 155
Query: 220 QVWKDNMSKVTSPEIKSGSKDDF------TKITFTPDLTKFKMTSLDKDMVDLITRRAYD 273
+N+ S +++ S +D T++TF PD F+ L + +D+ R
Sbjct: 156 ----NNIVVRCSNGMENKSWEDIPGKWKGTRVTFIPDFMSFETNELSQVYLDITLDRLQT 211
Query: 274 AAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDR 333
A D++ NG+K+ NF+ Y + Y D I+ E N +A+ S
Sbjct: 212 LAVVNPDIQFTFNGKKVQ-GNFKKYARQY--------DEHAIVQEQENC--SIAVGRSPD 260
Query: 334 GFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNK-DLG------CTIIMLFGNK 386
GF+Q+++VN+I T GG H+D V+D I + +I +K+K K D+ C I++F
Sbjct: 261 GFRQLTYVNNIHTKNGGHHIDCVMDDICEDLIPQIKRKFKIDVTKARVKECLTIVMFVRD 320
Query: 387 FNNVKNNKLQMAKTLIDIGVRLGGMALKPF-QVKNHIW---------IFINCLIVNPTFD 436
N++ + Q + L PF ++++HI I N I+ P +
Sbjct: 321 MKNMRFDS-QTKERLT-----------SPFGEIRSHIQLDAKKISRAILNNEAILMPIIE 368
Query: 437 SQTKENM-------TLQKGSFGSTCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSG 489
+ + T V K AN G D TL LTEGDSA +
Sbjct: 369 AALARKLAAEKAAETKAAKKASKAKVHKHIKANLCG--KDADTTLFLTEGDSAIGYLID- 425
Query: 490 LGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLR 549
V ++ +G +PLRGK+LN ++ +L+N E+ ++ I GL +K + L
Sbjct: 426 --VRDKELHGGYPLRGKVLNSWGMSYADMLKNKELFDICAITGLVLGEK------AENLN 477
Query: 550 YGRLMIMTDQDQDG-SHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYS 608
Y + IMTD D DG I ++ F NWP L + TP+I A +++ FY+
Sbjct: 478 YHNIAIMTDADHDGLGSIYPSLLGFF-SNWPELFEQGRIRFVKTPVIIAQIGKKQEWFYT 536
Query: 609 LPEFEEWKE 617
+ E+E K+
Sbjct: 537 VAEYESAKD 545
>gi|116326225|ref|YP_802945.1| DNA topoisomerase subunit DNA-dependent ATPase [Enterobacteria
phage RB32]
gi|228861318|ref|YP_002854339.1| gp60plus39 DNA topoisomerase subunit [Enterobacteria phage RB14]
gi|414086365|ref|YP_006986554.1| topoisomerase II large subunit [Enterobacteria phage
vB_EcoM_ACG-C40]
gi|422934786|ref|YP_007004745.1| large subunit topoisomerase II [Escherichia phage wV7]
gi|115343818|gb|ABI94827.1| DNA topoisomerase subunit DNA-dependent ATPase [Enterobacteria
phage RB32]
gi|227438334|gb|ACP30647.1| gp60plus39 DNA topoisomerase subunit [Enterobacteria phage RB14]
gi|291290216|dbj|BAI83011.1| topoisomerase II large subunit [Enterobacteria phage AR1]
gi|343177340|gb|AEM00666.1| large subunit topoisomerase II [Escherichia phage wV7]
gi|383396146|gb|AFH19962.1| topoisomerase II large subunit [Enterobacteria phage
vB_EcoM_ACG-C40]
Length = 605
Score = 177 bits (450), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 172/609 (28%), Positives = 269/609 (44%), Gaps = 104/609 (17%)
Query: 40 SQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNK 99
S +EHI R YIGS +L + + YVPGL K+ DEI+ N+ D
Sbjct: 10 SDIEHIKKRSGMYIGSSANEMHERFLFGK------WESVQYVPGLVKLIDEIIDNSVDEG 63
Query: 100 QRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEED 159
R KI V + N ++V +NG+GIP K PT +
Sbjct: 64 IRTKFKFANKINVTIKNNQVTVEDNGRGIPQAMVK-----TPT---------------GE 103
Query: 160 KVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFK 219
++ G P + N+ D++++VTGG NG G+ L NIFS FV ET +
Sbjct: 104 EIPG--PVAAWTIPKAGGNFGDDKERVTGGMNGVGSSLTNIFSVMFVGETGDGQ------ 155
Query: 220 QVWKDNMSKVTSPEIKSGSKDDF------TKITFTPDLTKFKMTSLDKDMVDLITRRAYD 273
+N+ S +++ S +D T++TF PD F+ L + +D+ R
Sbjct: 156 ----NNIVVRCSNGMENKSWEDIPGKWKGTRVTFIPDFMSFETNELSQVYLDITLDRLQT 211
Query: 274 AAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDR 333
A D++ NG+K+ NF+ Y + Y D I+ E N +A+ S
Sbjct: 212 LAVVYPDIQFTFNGKKVQ-GNFKKYARQY--------DEHAIVQEQENC--SIAVGRSPD 260
Query: 334 GFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNK-DLG------CTIIMLFGNK 386
GF+Q+++VN+I T GG H+D V+D I + +I +K+K K D+ C I++F
Sbjct: 261 GFRQLTYVNNIHTKNGGHHIDCVMDDICEDLIPQIKRKFKIDVTKARVKECLTIVMFVRD 320
Query: 387 FNNVKNNKLQMAKTLIDIGVRLGGMALKPF-QVKNHIW---------IFINCLIVNPTFD 436
N++ + Q + L PF ++++HI I N I+ P +
Sbjct: 321 MKNMRFDS-QTKERLT-----------SPFGEIRSHIQLDAKKISRAILNNEAILMPIIE 368
Query: 437 SQTKENM-------TLQKGSFGSTCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSG 489
+ + T V K AN G D TL LTEGDSA +
Sbjct: 369 AALARKLAAEKAAETKAAKKASKAKVHKHIKANLCG--KDADTTLFLTEGDSAIGYLID- 425
Query: 490 LGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLR 549
V ++ +G +PLRGK+LN ++ +L+N E+ ++ I GL +K + L
Sbjct: 426 --VRDKELHGGYPLRGKVLNSWGMSYADMLKNKELFDICAITGLVLGEK------AENLN 477
Query: 550 YGRLMIMTDQDQDG-SHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYS 608
Y + IMTD D DG I ++ F NWP L + TP+I A +++ FY+
Sbjct: 478 YHNIAIMTDADHDGLGSIYPSLLGFF-SNWPELFEQGRIRFVKTPVIIAQVGKKQEWFYT 536
Query: 609 LPEFEEWKE 617
+ E+E K+
Sbjct: 537 VAEYESAKD 545
>gi|330947934|ref|XP_003307007.1| hypothetical protein PTT_20328 [Pyrenophora teres f. teres 0-1]
gi|311315186|gb|EFQ84894.1| hypothetical protein PTT_20328 [Pyrenophora teres f. teres 0-1]
Length = 1203
Score = 177 bits (450), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 117/326 (35%), Positives = 167/326 (51%), Gaps = 59/326 (18%)
Query: 1894 SESKIVSAVSCDEMYVDCSQLL-----------QELSLTPLQ-----FASYLRETIAKET 1937
S +V +VS DE +D S + E S+ Q A LR+ + T
Sbjct: 479 STGGLVQSVSIDEALIDVSNICIAVGGSDGKAHSEGSIYREQAKANEIALNLRDEVRSRT 538
Query: 1938 GCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNS 1997
GC S G G N L A++A ++AKP GQ+ + P+ DF+ + + DLPGV S+ KL
Sbjct: 539 GCNVSVGIGGNVLLAKVALRRAKPAGQYQIKPEEALDFVGQLQVQDLPGVAWSIGGKLEG 598
Query: 1998 LGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRF 2057
LG + D++ ++ +RL +G K G LY + RG D +E+ + RKSVSAEVN+G+RF
Sbjct: 599 LGIKLVKDIRELTKERLIQTLGPKTGEKLYGYSRGIDRQEVGEQVIRKSVSAEVNWGVRF 658
Query: 2058 QNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITK 2117
+N ++ + F+ L GE++KRL + K+KGK T+K+M RS +AP + K LGHG CD K
Sbjct: 659 ENQEQADEFIASLCGELQKRLLKEKVKGKQFTMKVMRRSPDAPLDPPKHLGHGKCDTHNK 718
Query: 2118 SSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKE 2177
S +LL GV T SS + + KE
Sbjct: 719 S---------------ILL----------------GVA---TNSSEV---------LTKE 735
Query: 2178 VLFIVNKLKVDPVELRGIGIQVSKLE 2203
L I+ P ELRGIGIQ++KLE
Sbjct: 736 ALAIMRGFGFTPGELRGIGIQMTKLE 761
Score = 103 bits (256), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 91/195 (46%), Gaps = 50/195 (25%)
Query: 1542 DFLGEFYNKSRLHHLSTMGSMFKQYVNELREK----HDGVFRGIEAIRKWKTSLGITEDE 1597
+FL ++Y +SRLHHLST + K + L + R + R++
Sbjct: 341 NFLEQYYRESRLHHLSTWKAELKSQMQALASEKTLSQKAKHRRLPGSRRY---------- 390
Query: 1598 DLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGV 1657
I+HID D FF +V ++ HPE +D+P VAHG+G+ S++
Sbjct: 391 ------------------ILHIDFDSFFAAVSLKKHPEYKDKPAVVAHGQGSGSEIAS-- 430
Query: 1658 DRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLY 1717
R YG+ NGM++ A + CP+LKI+PYDF Y+E S Y
Sbjct: 431 ----------------CNYPARTYGVKNGMWMKRAQELCPDLKILPYDFPAYEETSRAFY 474
Query: 1718 NLIASLTLNIEAVSL 1732
++I S +++VS+
Sbjct: 475 DVILSTGGLVQSVSI 489
Score = 72.4 bits (176), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 89/185 (48%), Gaps = 36/185 (19%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGG----IFQGVAIFVNGYTKHCMMLDAYYIVPSAEE 1374
GG+ + +RK + L+A+ S+ G IF+G+ VNGYT+ PS +
Sbjct: 35 GGFTDYFRRKKIKLQNLDADIRSQAGDKPQIFKGIVTHVNGYTQ-----------PSLND 83
Query: 1375 LKALMMLHGGIYHHYESSRTT--HIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLL 1432
L L++ HGG + Y + +TT HIIAS+L K + + +I+KP W+VDSI AGKLL
Sbjct: 84 LHTLIVQHGGGFLQYLNGKTTVTHIIASSLTPKKAVEFQ-RYRIVKPAWVVDSIQAGKLL 142
Query: 1433 DHKKY-----------LLYTGTDAKPLTKLLQKSYFENTEAPCCSKSL-------VETSS 1474
Y L + + + + Y E T+A + L V TS+
Sbjct: 143 PWNDYRVVDEGEKQNVLAFDNGNITAQANVKARGYREQTDASWYTSQLRGSQAGPVSTST 202
Query: 1475 HTSTV 1479
TS++
Sbjct: 203 PTSSM 207
>gi|398313547|emb|CCI88894.1| protein of unknown function [Yersinia phage phiD1]
Length = 605
Score = 177 bits (450), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 172/609 (28%), Positives = 269/609 (44%), Gaps = 104/609 (17%)
Query: 40 SQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNK 99
S +EHI R YIGS +L + + YVPGL K+ DEI+ N+ D
Sbjct: 10 SDIEHIKKRSGMYIGSSANEMHERFLFGK------WESVQYVPGLVKLIDEIIDNSVDEG 63
Query: 100 QRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEED 159
R KI V + N ++V +NG+GIP K PT +
Sbjct: 64 IRTKFKFANKINVTIKNNQVTVEDNGRGIPQAMVK-----TPT---------------GE 103
Query: 160 KVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFK 219
++ G P + N+ D++++VTGG NG G+ L NIFS FV ET +
Sbjct: 104 EIPG--PVAAWTIPKAGGNFGDDKERVTGGMNGVGSSLTNIFSVMFVGETGDGQ------ 155
Query: 220 QVWKDNMSKVTSPEIKSGSKDDF------TKITFTPDLTKFKMTSLDKDMVDLITRRAYD 273
+N+ S +++ S +D T++TF PD F+ L + +D+ R
Sbjct: 156 ----NNIVVRCSNGMENKSWEDIPGKWKGTRVTFIPDFMSFETNELSQVYLDITLDRLQT 211
Query: 274 AAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDR 333
A D++ NG+K+ NF+ Y + Y D I+ E N +A+ S
Sbjct: 212 LAVVYPDIQFTFNGKKVQ-GNFKKYARQY--------DEHAIVQEQENC--SIAVGRSPD 260
Query: 334 GFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNK-DLG------CTIIMLFGNK 386
GF+Q+++VN+I T GG H+D V+D I + +I +K+K K D+ C I++F
Sbjct: 261 GFRQLTYVNNIHTKNGGHHIDCVMDDICEDLIPQIKRKFKIDVTKARVKECLTIVMFVRD 320
Query: 387 FNNVKNNKLQMAKTLIDIGVRLGGMALKPF-QVKNHIW---------IFINCLIVNPTFD 436
N++ + Q + L PF ++++HI I N I+ P +
Sbjct: 321 MKNMRFDS-QTKERLT-----------SPFGEIRSHIQLDAKKISRAILNNEAILMPIIE 368
Query: 437 SQTKENM-------TLQKGSFGSTCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSG 489
+ + T V K AN G D TL LTEGDSA +
Sbjct: 369 AALARKLAAEKAAETKAAKKASKAKVHKHIKANLCG--KDADTTLFLTEGDSAIGYLID- 425
Query: 490 LGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLR 549
V ++ +G +PLRGK+LN ++ +L+N E+ ++ I GL +K + L
Sbjct: 426 --VRDKELHGGYPLRGKVLNSWGMSYADMLKNKELFDICAITGLVLGEK------AENLN 477
Query: 550 YGRLMIMTDQDQDG-SHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYS 608
Y + IMTD D DG I ++ F NWP L + TP+I A +++ FY+
Sbjct: 478 YHNIAIMTDADHDGLGSIYPSLLGFF-SNWPELFEQGRIRFVKTPVIIAQVGKKQEWFYT 536
Query: 609 LPEFEEWKE 617
+ E+E K+
Sbjct: 537 VAEYESAKD 545
>gi|425769467|gb|EKV07959.1| DNA damage repair protein Mus42, putative [Penicillium digitatum
PHI26]
Length = 1165
Score = 177 bits (449), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 102/280 (36%), Positives = 153/280 (54%), Gaps = 43/280 (15%)
Query: 1924 QFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSD 1983
+ A LR++I ++TGC S G G+N L A+++ KKAKP GQF L P + DF+ ++ + D
Sbjct: 509 EIAQNLRDSIKEKTGCAVSVGIGNNILLAKVSLKKAKPAGQFQLKPDAVLDFIGDLTVRD 568
Query: 1984 LPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQ 2043
LPGVG S+ KL L + D++++ ++L + +G K G L+++ RG D E+ +
Sbjct: 569 LPGVGSSMAIKLEELSVRFVKDIRDLPREKLISSLGPKTGNKLWEYARGIDRTEVGDQTT 628
Query: 2044 RKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREA 2103
RKSVSAEVN+GIRF N + + F+ L E+ +RL E MKGK +TLK+M RS +AP +
Sbjct: 629 RKSVSAEVNWGIRFVNQDQADDFVHSLCEELNRRLMENLMKGKQLTLKVMRRSIDAPLQP 688
Query: 2104 SKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSS 2163
K LGHG CD KS +L GV +++
Sbjct: 689 VKHLGHGKCDTFNKSVAL-------------------------------GV------ATN 711
Query: 2164 LPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSKLE 2203
P I KE + ++ P +LRG+G+Q++KLE
Sbjct: 712 APEVIG------KEAISMLRSFNFSPGDLRGLGVQMTKLE 745
Score = 149 bits (377), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 133/518 (25%), Positives = 227/518 (43%), Gaps = 102/518 (19%)
Query: 1319 GGYMEAKKRKLEE-QFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKA 1377
G YM KK KL+ E+ A++ IF+G+ VNGYT+ PS ++L
Sbjct: 38 GDYMRRKKMKLQNLDVEIRASAGDCPPIFRGIVAHVNGYTQ-----------PSLQDLHH 86
Query: 1378 LMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHK 1435
L++ HGG + Y +T THIIAS L K ++ + +I+KP W+ DSI AG+LL
Sbjct: 87 LIVSHGGGFLQYLDGKTAATHIIASALTPKKREEFR-RYRIVKPTWVTDSIKAGRLLPWD 145
Query: 1436 KYLLYTGTDAKPLTKLLQKSYFENTEAP--------------------CCSKSLVETSSH 1475
++ + A+ + K + + +P +K+++ +SS+
Sbjct: 146 EFRIVDEGQAQRVLKFDDGRFISHMNSPRPGYKEQSRASWYSSQLRDMSITKAVIGSSSN 205
Query: 1476 TSTVS------DSVDNTEESKSEAVN-------SEESKSEAANPIESKQT---------- 1512
T S V +T S+S + + E + E P ++T
Sbjct: 206 PVTPSTRPKAPQMVSSTMPSQSSQSDYGDFPSFTMEKEDEVHEPQHQQETPASDITQSTM 265
Query: 1513 ---------VKTKESKLETVNISAPKPQASSTKNA-SNEDFLGEFYNKSRLHHLSTMGSM 1562
V T L + ++P + S K+A ++E++ + + R+ S +
Sbjct: 266 PHQAPNSDQVPTLPDPLVDLESTSPLDKKSLPKSALTSEEYNAKLLSDPRMQKSSVVNPE 325
Query: 1563 F-KQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEP----VIM 1617
F +QY E R H + WK L +E S +P P I+
Sbjct: 326 FLQQYYRESRLHH---------LSTWKADLKAQLQVATKENAQSQTSQKKPVPGSRRYIL 376
Query: 1618 HIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLN 1677
H+D D FF +V +R HPELQ +PVA+AHG G+SS++
Sbjct: 377 HVDFDSFFAAVSVRKHPELQGKPVAIAHGSGSSSEIAS------------------CNYP 418
Query: 1678 TREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNES 1737
R G+ NGM++ AL+ C +LK++PYDF Y++ S Y I ++ +++VS+ +E+
Sbjct: 419 ARARGVKNGMWMKAALQLCSDLKVLPYDFPAYEDASRKFYTSILAIDGTVQSVSI--DEA 476
Query: 1738 FLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775
++ + D + + + REQ + +AQ++
Sbjct: 477 LIDVTNSCLEAGGSDGKAISEGSIYREQVKADEIAQNL 514
Score = 42.4 bits (98), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 91/202 (45%), Gaps = 40/202 (19%)
Query: 1722 SLTLNIEAVS----------LYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPL 1771
S +LN EA+S + + FL ALPEDIRQE+L++ +R S + + TEP
Sbjct: 964 SASLNEEAMSRQASPNFEEPVEASAEFLAALPEDIRQELLEEQNR--SRMQQRLRATEPA 1021
Query: 1772 AQDIICADSHTLVRTPSPSPI-LDMSTSILDTTTSHILSSN--VSLQEMRTMLREW---M 1825
+ + + P+PI ++ S+ + +S L ++R + W
Sbjct: 1022 KR------PPSRAQEAPPAPITVEKLLSLPPLPKRPVFTSQRLSQLPDLRDAVGSWHEVF 1075
Query: 1826 CESQPEPSDIEMFSEYLSNL-VEERHLNPIVILLRFL-------RRHVGKKE-------- 1869
P D+ + +YLS++ ++E+ ++ V ++R+L + G KE
Sbjct: 1076 AADGPYGDDVSLLCKYLSSVTLQEKDMDKAVSVVRWLMWLVDDHSQQQGSKEPRGSRPEG 1135
Query: 1870 STVWAEAYQEMLSCVQSAMKHK 1891
+ W EA + + VQ A++ +
Sbjct: 1136 TISWEEAIESIQYSVQIALEQR 1157
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,100,255,969
Number of Sequences: 23463169
Number of extensions: 1685411408
Number of successful extensions: 5790546
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10541
Number of HSP's successfully gapped in prelim test: 19809
Number of HSP's that attempted gapping in prelim test: 5587597
Number of HSP's gapped (non-prelim): 144802
length of query: 2307
length of database: 8,064,228,071
effective HSP length: 159
effective length of query: 2148
effective length of database: 8,628,551,496
effective search space: 18534128613408
effective search space used: 18534128613408
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 86 (37.7 bits)