BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7164
(2307 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O16140|TOP2_BOMMO DNA topoisomerase 2 OS=Bombyx mori GN=TOP2 PE=2 SV=1
Length = 1547
Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/671 (61%), Positives = 481/671 (71%), Gaps = 115/671 (17%)
Query: 13 QQNGNG-PSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETN 71
+QNG G P+P K K ++EKIYQKKSQLEHILLRPDTYIGSVE TETMW+ ++
Sbjct: 15 KQNGTGEPAPAK---GQKGAIEKIYQKKSQLEHILLRPDTYIGSVERATETMWVYDKVKE 71
Query: 72 HMERREITYVP-----GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGK 126
M ++E+T VP GLYKI+DEILVNA DNKQRDPKM+ IKI +NQETNTISV+NNG
Sbjct: 72 CMMQKELTSVPDCSFPGLYKIYDEILVNAADNKQRDPKMDVIKIDINQETNTISVYNNGS 131
Query: 127 GIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKV 186
GIPVV HKDEKM+VPTMI FGHLLTSSNYNDEE+KV
Sbjct: 132 GIPVVMHKDEKMYVPTMI-------------------------FGHLLTSSNYNDEEEKV 166
Query: 187 TGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIK-SGSKDDFTKI 245
TGGRNGYGAKLCNIFS+KF VET+ +YKK FKQ W NM+K + P+IK SG DDFTKI
Sbjct: 167 TGGRNGYGAKLCNIFSTKFTVETASKQYKKHFKQTWGSNMTKASEPKIKDSGKDDDFTKI 226
Query: 246 TFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD- 304
F+PDL KFKM L+ D+V L++RRAYD AAS++ VKV+LNGE+L + F+DYV LY
Sbjct: 227 VFSPDLAKFKMEKLEDDIVLLMSRRAYDVAASSQGVKVYLNGERLKINKFKDYVDLYIKG 286
Query: 305 RQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQI 364
+ DE+G P+K++YE V+ RWEVA+ SD GFQQVSFVNSIATTKGG+HVD V D++VK +
Sbjct: 287 KDDENGQPLKVVYEKVSDRWEVALTISDMGFQQVSFVNSIATTKGGKHVDTVADSVVKNV 346
Query: 365 IEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWI 424
+EV+KKKNK GG+ +KP+QVK H+W+
Sbjct: 347 LEVLKKKNK-----------------------------------GGVNIKPYQVKTHMWL 371
Query: 425 FINCLIVNPTFDSQTKENMTLQKGSFGSTC------------------------------ 454
F+NCLIVNPTFDSQTKENMTLQ SFGS C
Sbjct: 372 FVNCLIVNPTFDSQTKENMTLQAKSFGSKCNLSEKFITAVTKCGLVESVLTWAKFKAQDQ 431
Query: 455 --------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGV 500
+PKLEDANDAGTKN+ CTLILTEGDSAK+LAVSGL VVGRD YGV
Sbjct: 432 LVKASGKKQSKLKGIPKLEDANDAGTKNAHLCTLILTEGDSAKTLAVSGLSVVGRDHYGV 491
Query: 501 FPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQD 560
FPL GK LNVR+A+HKQ+LEN EINNL+KILGLQY KKY +V+D+KTLRYG++MIM DQD
Sbjct: 492 FPLEGKPLNVRDASHKQVLENVEINNLIKILGLQYKKKYNSVDDLKTLRYGKVMIMADQD 551
Query: 561 QDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETT 620
QDGSHIKGLIINFIHHNWP LL+LPFLEEFITPI+KATK +E+SFYSLPEFEEWK+ET
Sbjct: 552 QDGSHIKGLIINFIHHNWPELLKLPFLEEFITPIVKATKKDKEISFYSLPEFEEWKKETE 611
Query: 621 NWHTYKIKYYK 631
N HTY IKYYK
Sbjct: 612 NHHTYNIKYYK 622
Score = 151 bits (381), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 67/114 (58%), Positives = 89/114 (78%), Gaps = 1/114 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP +Y+PIIPMVLVNG EGIGTGW TKIPN+NPR+I +N++R++ GE P M PWYKN
Sbjct: 843 KIEPVYYLPIIPMVLVNGVEGIGTGWSTKIPNYNPRDIAENLRRLLDGEKPKVMHPWYKN 902
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
FKG ++ GD ++V++GE AIL DK+EITEL VG WT +YK+ + + G +K
Sbjct: 903 FKGNVEGFGD-KYVISGEAAILPGDKIEITELPVGTWTHNYKENVLEPMLGTDK 955
Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 38/52 (73%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
K ++YLLGM+ W LT E+K+ELLK+RD K+TEL LK K LW +DLDA
Sbjct: 1144 KKFNYLLGMSMWMLTKEKKDELLKQRDQKLTELTTLKNKTAPMLWREDLDAF 1195
>sp|O42130|TOP2A_CHICK DNA topoisomerase 2-alpha OS=Gallus gallus GN=TOP2A PE=2 SV=2
Length = 1553
Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/657 (60%), Positives = 471/657 (71%), Gaps = 107/657 (16%)
Query: 21 PKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITY 80
PK ++SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + R++T+
Sbjct: 20 PKADGAQKRLSVERIYQKKTQLEHILLRPDTYIGSVETVTQQMWVFDEDVG-LNCRDVTF 78
Query: 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
VPGLYKIFDEILVNA DNKQRD M+CIK+T++ E NTISVWNNGKGIPVVEHK EK++V
Sbjct: 79 VPGLYKIFDEILVNAADNKQRDKSMSCIKVTIDPENNTISVWNNGKGIPVVEHKVEKVYV 138
Query: 141 PTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNI 200
P +IF G LLTSSNY+D+E KVTGGRNGYGAKLCNI
Sbjct: 139 PALIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNI 173
Query: 201 FSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLD 260
FS+KF VET+C EYKK FKQ W DNM K +K +D+T +TF PDL+KFKMT LD
Sbjct: 174 FSTKFTVETACREYKKLFKQTWTDNMGKAGEMTLKHFDGEDYTCVTFQPDLSKFKMTILD 233
Query: 261 KDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYEN 319
KD+V L++RRAYD A STKDVKVFLNG++LPVK F+ YV LY D+ DE G+ +K+I+E
Sbjct: 234 KDIVALMSRRAYDIAGSTKDVKVFLNGKRLPVKGFRSYVDLYLKDKVDETGNALKVIHEE 293
Query: 320 VNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTI 379
VN RWEV + S++GFQQVSFVNSIATTKGGRHVD V D IV ++I+VVKKKNK+
Sbjct: 294 VNSRWEVCLTLSEKGFQQVSFVNSIATTKGGRHVDYVADQIVTKLIDVVKKKNKN----- 348
Query: 380 IMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQT 439
G+ +KPFQVKNH+WIF+N LI NPTFDSQT
Sbjct: 349 ------------------------------GVGVKPFQVKNHMWIFVNSLIENPTFDSQT 378
Query: 440 KENMTLQKGSFGSTC--------------------------------------------- 454
KENMTLQ SFGSTC
Sbjct: 379 KENMTLQAKSFGSTCKLSEKFIKGAVGCGIVESILNWVKFKAQTQLNKKCSAVKHTKIKG 438
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
VPKL+DANDAG+KNSIDCTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+
Sbjct: 439 VPKLDDANDAGSKNSIDCTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKMLNVREAS 498
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
HKQI+ENAEINN++KI+GLQY K Y E +K+LRYG++MIMTDQDQDGSHIKGL+INFI
Sbjct: 499 HKQIMENAEINNIIKIVGLQYKKNYEDRESLKSLRYGKIMIMTDQDQDGSHIKGLLINFI 558
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
HHNWP+LLR FLEEFITPIIK +K +EE+ FYS+PEFEEWK T N++++KIKYYK
Sbjct: 559 HHNWPSLLRHNFLEEFITPIIKVSKNKEEIPFYSIPEFEEWKSSTQNYNSWKIKYYK 615
Score = 151 bits (381), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWY+PIIPMVL+NGAEGIGTGW KIPN + RE V+NI+ ++ G++PLPM P YKN
Sbjct: 836 RVEPEWYMPIIPMVLINGAEGIGTGWSCKIPNFDIRETVNNIRCLLDGKEPLPMLPSYKN 895
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG ID G +++V++GE++ILD +EITEL V WT YK+ L+ +L+G EK
Sbjct: 896 FKGTIDELGPNQYVISGEVSILDSTTIEITELPVRTWTQTYKEQVLEPMLNGTEK 950
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 38/53 (71%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
D++YLL M W LT E+K+EL K+RD+K EL LK K+P+DLW +DL A E
Sbjct: 1116 DFNYLLNMPLWYLTKEKKDELCKQRDNKDKELEDLKHKSPSDLWKEDLAAFVE 1168
>sp|P15348|TOP2_DROME DNA topoisomerase 2 OS=Drosophila melanogaster GN=Top2 PE=1 SV=1
Length = 1447
Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/647 (61%), Positives = 461/647 (71%), Gaps = 105/647 (16%)
Query: 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFD 89
+S+E++YQKKSQLEHILLRPD+YIGSVE E MW+ + N M ++EI++VPGLYKIFD
Sbjct: 8 LSIEQMYQKKSQLEHILLRPDSYIGSVEFTKELMWVYDNSQNRMVQKEISFVPGLYKIFD 67
Query: 90 EILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
EILVNA DNKQRD MN IKI ++ E N +SVWNNG+GIPV HK++KM+VPTMI
Sbjct: 68 EILVNAADNKQRDKSMNTIKIDIDPERNMVSVWNNGQGIPVTMHKEQKMYVPTMI----- 122
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
FGHLLTSSNYND+E KVTGGRNGYGAKLCNIFS+ F VET
Sbjct: 123 --------------------FGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTSFTVET 162
Query: 210 SCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
+ EYKKSFKQ W +NM K + +IK + D+T+ITF+PDL KFKM LD+D+V L++R
Sbjct: 163 ATREYKKSFKQTWGNNMGKASDVQIKDFNGTDYTRITFSPDLAKFKMDRLDEDIVALMSR 222
Query: 270 RAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDED-GDPVKIIYENVNPRWEVAI 328
RAYD AAS+K V VFLNG KL V+NF+DY+ L+ D+D G P+KI++E N RWEVA
Sbjct: 223 RAYDVAASSKGVSVFLNGNKLGVRNFKDYIDLHIKNTDDDSGPPIKIVHEVANERWEVAC 282
Query: 329 APSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
PSDRGFQQVSFVNSIAT KGGRHVD VVD ++KQ++EV+KKKNK
Sbjct: 283 CPSDRGFQQVSFVNSIATYKGGRHVDHVVDNLIKQLLEVLKKKNK--------------- 327
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
GG+ +KPFQV+NH+W+F+NCLI NPTFDSQTKENMTLQ+
Sbjct: 328 --------------------GGINIKPFQVRNHLWVFVNCLIENPTFDSQTKENMTLQQK 367
Query: 449 SFGSTC--------------------------------------------VPKLEDANDA 464
FGS C +PKLEDAN+A
Sbjct: 368 GFGSKCTLSEKFINNMSKSGIVESVLAWAKFKAQNDIAKTGGRKSSKIKGIPKLEDANEA 427
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
G KNSI CTLILTEGDSAKSLAVSGLGV+GRD YGVFPLRGKLLNVREA KQ+ ENAEI
Sbjct: 428 GGKNSIKCTLILTEGDSAKSLAVSGLGVIGRDLYGVFPLRGKLLNVREANFKQLSENAEI 487
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
NNL KI+GLQY KKY T +D+KTLRYG++MIMTDQDQDGSHIKGL+INFIH NWP LLRL
Sbjct: 488 NNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIMTDQDQDGSHIKGLLINFIHTNWPELLRL 547
Query: 585 PFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
PFLEEFITPI+KATK EELSFYSLPEFEEWK +T N HTY IKYYK
Sbjct: 548 PFLEEFITPIVKATKKNEELSFYSLPEFEEWKNDTANHHTYNIKYYK 594
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 88/115 (76%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP WY+PIIPMVLVNGAEGIGTGW TKI N+NPREI+ N+++MI G++P M PWYKN
Sbjct: 815 KIEPLWYLPIIPMVLVNGAEGIGTGWSTKISNYNPREIMKNLRKMINGQEPSVMHPWYKN 874
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F G ++Y D R++ G I IL ++LEI+EL VG WT +YK+ L+ L +G EK
Sbjct: 875 FLGRMEYVSDGRYIQTGNIQILSGNRLEISELPVGVWTQNYKENVLEPLSNGTEK 929
Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 42/55 (76%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
K +DYLLGM+ W LT E+KNELLK+RD K++EL L+KK P LW DDLDAL K
Sbjct: 1121 KKFDYLLGMSMWMLTEEKKNELLKQRDTKLSELESLRKKTPEMLWLDDLDALESK 1175
>sp|O42131|TOP2B_CHICK DNA topoisomerase 2-beta OS=Gallus gallus GN=TOP2B PE=2 SV=1
Length = 1627
Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/658 (59%), Positives = 469/658 (71%), Gaps = 107/658 (16%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
S K + KMSVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T
Sbjct: 44 SVNKNDTSKKMSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVT 102
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
+VPGLYKIFDEILVNA DNKQRD M CIKI+++ E+N IS+WNNGKGIPVVEHK EK++
Sbjct: 103 FVPGLYKIFDEILVNAADNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEHKVEKVY 162
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCN 199
VP +IF G LLTSSNY+D+E KVTGGRNGYGAKLCN
Sbjct: 163 VPALIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCN 197
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSL 259
IFS+KF VET+C EYK SFKQ W +NM K + P+IK DD+T ITF PDL+KFKM +L
Sbjct: 198 IFSTKFTVETACKEYKHSFKQTWMNNMMKTSEPKIKHFEGDDYTCITFQPDLSKFKMENL 257
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYE 318
DKD+V L+TRRAYD A S K VKV LNG+KLPV F+ YV LY D+ DE G +K+I+E
Sbjct: 258 DKDIVSLMTRRAYDLAGSCKGVKVMLNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHE 317
Query: 319 NVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCT 378
VN RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 318 VVNERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK----- 372
Query: 379 IIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQ 438
G+++KPFQVKNHIW+F+NCLI NP+FDSQ
Sbjct: 373 ------------------------------AGVSVKPFQVKNHIWVFVNCLIENPSFDSQ 402
Query: 439 TKENMTLQKGSFGSTC-------------------------------------------- 454
TKENMTLQ SFGS C
Sbjct: 403 TKENMTLQPKSFGSKCQLSEKFFKAASNCGIIESILNWVKFKAQTQLNKKCSSVKHSKIK 462
Query: 455 -VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREA 513
+PKL+DANDAG K+S+DCTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA
Sbjct: 463 GIPKLDDANDAGGKHSLDCTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREA 522
Query: 514 THKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINF 573
+HKQI+ENAEINN++KI+GLQY K Y E +K+LRYG++MIMTDQDQDGSHIKGL+INF
Sbjct: 523 SHKQIMENAEINNIIKIVGLQYKKSYEDPESLKSLRYGKIMIMTDQDQDGSHIKGLLINF 582
Query: 574 IHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
IHHNWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 583 IHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHMENHKAWKIKYYK 640
Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVLVNGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 861 RVEPEWYIPIIPMVLVNGAEGIGTGWACKLPNYDTREIVNNVRRMLDGLDPHPMLPNYKN 920
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F+G I G +++VV+GEI ++D + +EITEL V WT YK+ L+ +L+G EK
Sbjct: 921 FRGTIQELGQNQYVVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTEK 975
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 38/53 (71%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
D++Y+L M+ WSLT E+ EL+K RD K ELN LK+K+ +DLW +DL A E
Sbjct: 1147 DFNYILNMSLWSLTKEKVEELIKHRDSKERELNDLKRKSASDLWKEDLAAFVE 1199
>sp|Q01320|TOP2A_MOUSE DNA topoisomerase 2-alpha OS=Mus musculus GN=Top2a PE=1 SV=2
Length = 1528
Score = 793 bits (2048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/649 (59%), Positives = 465/649 (71%), Gaps = 107/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 26 RLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIF 84
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EK++VP +IF
Sbjct: 85 DEILVNAADNKQRDPKMSCIRVTIDPENNVISIWNNGKGIPVVEHKVEKIYVPALIF--- 141
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 142 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 179
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ EYKK FKQ W DNM + E+K S +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 180 TASREYKKMFKQTWMDNMGRAGDMELKPFSGEDYTCITFQPDLSKFKMQSLDKDIVALMV 239
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG LPVK F+ YV LY D+ DE G+ +K+I+E VNPRWEV
Sbjct: 240 RRAYDIAGSTKDVKVFLNGNSLPVKGFRSYVDLYLKDKVDETGNSLKVIHEQVNPRWEVC 299
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S+RGFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 300 LTMSERGFQQISFVNSIATSKGGRHVDYVADQIVSKLVDVVKKKNK-------------- 345
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 346 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQA 384
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGSTC +PKL+DAN
Sbjct: 385 KSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQIQLNKKCSAVKHTKIKGIPKLDDAN 444
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG++NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 445 DAGSRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENA 504
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 505 EINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 564
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
R FLEEFITPI+K +K ++E++FYSLPEFEEWK T N +K+KYYK
Sbjct: 565 RHRFLEEFITPIVKVSKNKQEIAFYSLPEFEEWKSSTPNHKKWKVKYYK 613
Score = 157 bits (398), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 834 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEEPLPMLPSYKN 893
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V+NGE+AILD +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 894 FKGTIEELASNQYVINGEVAILDSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 948
Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 38/52 (73%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL K+R++K ELN LK+K+P+DLW +DL E
Sbjct: 1122 FNYLLDMPLWYLTKEKKDELCKQRNEKEQELNTLKQKSPSDLWKEDLAVFIE 1173
>sp|P41515|TOP2A_CRIGR DNA topoisomerase 2-alpha OS=Cricetulus griseus GN=TOP2A PE=1 SV=1
Length = 1526
Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/666 (58%), Positives = 471/666 (70%), Gaps = 107/666 (16%)
Query: 12 VQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETN 71
V +N K + ++S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + +
Sbjct: 9 VNENMQMNKKKNEDAKKRLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG 68
Query: 72 HMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVV 131
+ RE+T+VPGLYKIFDEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVV
Sbjct: 69 -INYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVV 127
Query: 132 EHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRN 191
EHK EKM+VP +IF G LLTSSNY+D+E KVTGGRN
Sbjct: 128 EHKVEKMYVPALIF-------------------------GQLLTSSNYDDDEKKVTGGRN 162
Query: 192 GYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDL 251
GYGAKLCNIFS++F VET+ EYKK FKQ W DNM + E+K + +D+T ITF PDL
Sbjct: 163 GYGAKLCNIFSTRFTVETASKEYKKMFKQTWMDNMGRAGDMELKPFNGEDYTCITFQPDL 222
Query: 252 TKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDG 310
+KFKM SLDKD+V L+ RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE G
Sbjct: 223 SKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETG 282
Query: 311 DPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKK 370
+ +K+++E VNPRWEV + S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKK
Sbjct: 283 NALKVVHEQVNPRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVSKLVDVVKK 342
Query: 371 KNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLI 430
KNK GG+A+K QVKNH+WIF+N LI
Sbjct: 343 KNK-----------------------------------GGVAVKAHQVKNHMWIFVNALI 367
Query: 431 VNPTFDSQTKENMTLQKGSFGSTC------------------------------------ 454
NPTFDSQTKENMTLQ SFGSTC
Sbjct: 368 ENPTFDSQTKENMTLQAKSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQIQLNKKCS 427
Query: 455 ---------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRG 505
+PKL+DANDAG++NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRG
Sbjct: 428 AVKHNRIKGIPKLDDANDAGSRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRG 487
Query: 506 KLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSH 565
K+LNVREA+HKQI+ENAEINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSH
Sbjct: 488 KILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSH 547
Query: 566 IKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTY 625
IKGL+INFIHHNWP+LLR FLEEFITPI+K +K ++EL+FYSLPEFEEWK T N +
Sbjct: 548 IKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQELAFYSLPEFEEWKSSTPNHKKW 607
Query: 626 KIKYYK 631
K+KYYK
Sbjct: 608 KVKYYK 613
Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 834 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRLLDGEEPLPMLPSYKN 893
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V+NGE+AIL+ +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 894 FKGTIEELASNQYVINGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 948
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL K+R++K ELN LK K+P+DLW +DL E
Sbjct: 1120 FNYLLDMPLWYLTKEKKDELCKQRNEKEQELNTLKNKSPSDLWKEDLAVFIE 1171
>sp|O46374|TOP2A_PIG DNA topoisomerase 2-alpha OS=Sus scrofa GN=TOP2A PE=2 SV=1
Length = 1533
Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/649 (60%), Positives = 465/649 (71%), Gaps = 107/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 27 RLSIERIYQKKTQLEHILLRPDTYIGSVESVTQQMWVYDEDIG-INYREVTFVPGLYKIF 85
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 86 DEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIF--- 142
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+DEE KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 143 ----------------------GQLLTSSNYDDEEKKVTGGRNGYGAKLCNIFSTKFTVE 180
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ EYKK FKQ W DNM + E+K + +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFHPDLSKFKMQSLDKDIVALMV 240
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG KLPVK F+ YV LY D+ DE G+P+KII+E VN RWEV
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDLYLKDKVDETGNPLKIIHEQVNHRWEVC 300
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 301 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVAKLVDVVKKKNK-------------- 346
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 347 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQV 385
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGSTC +PKL+DAN
Sbjct: 386 KSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDAN 445
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG +NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 446 DAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENA 505
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 506 EINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 565
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
R FLEEFITPI+K +K ++E++FYSLPEFEEWK T N +K+KYYK
Sbjct: 566 RHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYK 614
Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+ ++ GE+PLPM P YKN
Sbjct: 835 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRLLMDGEEPLPMLPSYKN 894
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V++GE+AIL+ +EI+EL + WT YK+ L+ +L+G EK
Sbjct: 895 FKGTIEELAPNQYVISGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEK 949
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL K R++K EL LK+K+P+DLW +DL A E
Sbjct: 1125 FNYLLDMPLWYLTKEKKDELCKLRNEKEQELETLKRKSPSDLWKEDLAAFIE 1176
>sp|P11388|TOP2A_HUMAN DNA topoisomerase 2-alpha OS=Homo sapiens GN=TOP2A PE=1 SV=3
Length = 1531
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/649 (59%), Positives = 464/649 (71%), Gaps = 107/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 27 RLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIF 85
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 86 DEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIF--- 142
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 143 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ EYKK FKQ W DNM + E+K + +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG KLPVK F+ YV +Y D+ DE G+ +K+I+E VN RWEV
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVC 300
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 301 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNK-------------- 346
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ
Sbjct: 347 ---------------------GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQP 385
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGSTC +PKL+DAN
Sbjct: 386 KSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDAN 445
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG +NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 446 DAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENA 505
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 506 EINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 565
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
R FLEEFITPI+K +K ++E++FYSLPEFEEWK T N +K+KYYK
Sbjct: 566 RHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKWKVKYYK 614
Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + REIV+NI+R++ GE+PLPM P YKN
Sbjct: 835 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEEPLPMLPSYKN 894
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I+ +++V++GE+AIL+ +EI+EL V WT YK+ L+ +L+G EK
Sbjct: 895 FKGTIEELAPNQYVISGEVAILNSTTIEISELPVRTWTQTYKEQVLEPMLNGTEK 949
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL + R++K EL+ LK+K+P+DLW +DL E
Sbjct: 1125 FNYLLDMPLWYLTKEKKDELCRLRNEKEQELDTLKRKSPSDLWKEDLATFIE 1176
>sp|Q64511|TOP2B_MOUSE DNA topoisomerase 2-beta OS=Mus musculus GN=Top2b PE=1 SV=2
Length = 1612
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/649 (59%), Positives = 462/649 (71%), Gaps = 107/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VPGLYKIF
Sbjct: 36 KLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVPGLYKIF 94
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP +IF
Sbjct: 95 DEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIF--- 151
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 152 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 189
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD+V L+T
Sbjct: 190 TACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMT 249
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N RW+V
Sbjct: 250 RRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELANERWDVC 309
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 310 LTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVSKLIEVVKKKNK-------------- 355
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
G+++KPFQVKNHIW+FINCLI NPTFDSQTKENMTLQ
Sbjct: 356 ---------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQP 394
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGS C +PKL+DAN
Sbjct: 395 KSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIPKLDDAN 454
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 455 DAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENA 514
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 515 EINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 574
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 575 KHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 623
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 844 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLEGLDPHPMLPNYKN 903
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 904 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 958
Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 831 AEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAP 890
++ + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E+N LK+K+P
Sbjct: 1112 SQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDTKGREVNDLKRKSP 1169
Query: 891 TDLWSDDLDALREK-DKI 907
+DLW +DL A E+ DK+
Sbjct: 1170 SDLWKEDLAAFVEELDKV 1187
>sp|Q64399|TOP2B_CRILO DNA topoisomerase 2-beta OS=Cricetulus longicaudatus GN=TOP2B PE=2
SV=1
Length = 1612
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/655 (58%), Positives = 463/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 30 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVP 88
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 89 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 148
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 149 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 183
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL KFKM LDKD
Sbjct: 184 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLAKFKMEKLDKD 243
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 244 IVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 303
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 304 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 355
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 356 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 388
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 389 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 448
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 449 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 508
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 509 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 568
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 569 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 623
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 844 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 903
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 904 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 958
Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Query: 832 EGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPT 891
+ + D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K E+N LK+K+P+
Sbjct: 1113 QNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDTKGREVNDLKRKSPS 1170
Query: 892 DLWSDDLDALREK-DKI 907
DLW +DL A E+ DK+
Sbjct: 1171 DLWKEDLAAFVEELDKV 1187
>sp|Q02880|TOP2B_HUMAN DNA topoisomerase 2-beta OS=Homo sapiens GN=TOP2B PE=1 SV=3
Length = 1626
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/655 (58%), Positives = 464/655 (70%), Gaps = 107/655 (16%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 42 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVG-MNCREVTFVP 100
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 101 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 160
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFS 202
+IF G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS
Sbjct: 161 LIF-------------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 195
Query: 203 SKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD 262
+KF VET+C EYK SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD
Sbjct: 196 TKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKD 255
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
+V L+TRRAYD A S + VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N
Sbjct: 256 IVALMTRRAYDLAGSCRGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELAN 315
Query: 322 PRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIM 381
RW+V + S++GFQQ+SFVNSIATTKGGRHVD VVD +V ++IEVVKKKNK
Sbjct: 316 ERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKNK-------- 367
Query: 382 LFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKE 441
G+++KPFQVKNHIW+FINCLI NPTFDSQTKE
Sbjct: 368 ---------------------------AGVSVKPFQVKNHIWVFINCLIENPTFDSQTKE 400
Query: 442 NMTLQKGSFGSTC---------------------------------------------VP 456
NMTLQ SFGS C +P
Sbjct: 401 NMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIP 460
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+HK
Sbjct: 461 KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHK 520
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI+ENAEINN++KI+GLQY K Y E +KTLRYG++MIMTDQDQDGSHIKGL+INFIHH
Sbjct: 521 QIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHH 580
Query: 577 NWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
NWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N +KIKYYK
Sbjct: 581 NWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYK 635
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 856 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 915
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
FKG I G +++ V+GEI ++D + +EITEL V WT YK+ L+ +L+G +K
Sbjct: 916 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 970
Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 7/89 (7%)
Query: 824 ERQERQAAEGE----DDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKM 879
E QE+ A E E D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K
Sbjct: 1113 EAQEKAAEEDETQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKG 1170
Query: 880 TELNILKKKAPTDLWSDDLDALREK-DKI 907
E+N LK+K+P+DLW +DL A E+ DK+
Sbjct: 1171 REVNDLKRKSPSDLWKEDLAAFVEELDKV 1199
>sp|P41516|TOP2A_RAT DNA topoisomerase 2-alpha OS=Rattus norvegicus GN=Top2a PE=2 SV=1
Length = 1526
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/649 (59%), Positives = 462/649 (71%), Gaps = 108/649 (16%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIF 88
++SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+VPGLYKIF
Sbjct: 26 RLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIF 84
Query: 89 DEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
DEILVNA DNKQRDPKM+CI++T+ N IS+WNNGKGIPVVEHK EKM+VP +IF
Sbjct: 85 DEILVNAADNKQRDPKMSCIRVTM-MRNNLISIWNNGKGIPVVEHKVEKMYVPALIF--- 140
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
G LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VE
Sbjct: 141 ----------------------GQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 178
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268
T+ EYKK FKQ W DNM + E+K S +D+T ITF PDL+KFKM SLDKD+V L+
Sbjct: 179 TASREYKKMFKQTWMDNMGRAGDMELKPFSGEDYTCITFQPDLSKFKMQSLDKDIVALMV 238
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRWEVA 327
RRAYD A STKDVKVFLNG +LPVK F+ YV +Y D+ DE G+ +K+++E VNPRWEV
Sbjct: 239 RRAYDIAGSTKDVKVFLNGNRLPVKGFRSYVDMYLKDKVDETGNALKVVHEQVNPRWEVC 298
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
+ S++GFQQ+SFVNSIAT+KGGRHVD V D IV ++++VVKKKNK
Sbjct: 299 LTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVSKLVDVVKKKNK-------------- 344
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GG+A+K QVKNH+WIF N +I NPTFDSQTKENMTLQ
Sbjct: 345 ---------------------GGVAVKADQVKNHMWIFGNAVIENPTFDSQTKENMTLQA 383
Query: 448 GSFGSTC---------------------------------------------VPKLEDAN 462
SFGSTC +PKL+DAN
Sbjct: 384 KSFGSTCQLSEKFIKAAIGCGIVESILNWVKFKAQIQLNKKCSAVKHNRIKGIPKLDDAN 443
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
DAG++NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENA
Sbjct: 444 DAGSRNSAECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENA 503
Query: 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL 582
EINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LL
Sbjct: 504 EINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 563
Query: 583 RLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
R FLEEFITPI+K +K ++E++FYSLPEFEEWK N +K+KYYK
Sbjct: 564 RHRFLEEFITPIVKVSKNKQEIAFYSLPEFEEWKSTNPNHKKWKVKYYK 612
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 833 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEEPLPMLPSYKN 892
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
+KG I+ +++V+NGE+AIL+ +EITEL + WT YK+ L+ +L+G EK
Sbjct: 893 YKGTIEELASNQYVINGEVAILNSTTIEITELPIRTWTQTYKEQVLEPMLNGTEK 947
Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 38/52 (73%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
++YLL M W LT E+K+EL K+RD+K ELN LKKK P+DLW +DL A E
Sbjct: 1122 FNYLLDMPLWYLTKEKKDELCKQRDEKEQELNTLKKKTPSDLWKEDLAAFVE 1173
>sp|Q23670|TOP2_CAEEL Probable DNA topoisomerase 2 OS=Caenorhabditis elegans GN=K12D12.1
PE=3 SV=2
Length = 1520
Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/656 (58%), Positives = 461/656 (70%), Gaps = 105/656 (16%)
Query: 22 KKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITET-MWLMNRETNHMERREITY 80
KK + +M++E IYQKKSQLEHILLRPDTYIGSVE +T MW+ N E + +E+R+I+Y
Sbjct: 53 KKGGGSKQMAIEDIYQKKSQLEHILLRPDTYIGSVEHTEKTPMWVYNMEESKLEQRDISY 112
Query: 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
VPGLYKI+DEILVNA DNKQRDPKMN IKIT+N+E N ISV+NNGKGIPV +HK EK++V
Sbjct: 113 VPGLYKIYDEILVNAADNKQRDPKMNTIKITINKEKNEISVYNNGKGIPVTQHKVEKVYV 172
Query: 141 PTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNI 200
P +IF G LLTSSNYND+E KVTGGRNGYGAKLCNI
Sbjct: 173 PELIF-------------------------GTLLTSSNYNDDEKKVTGGRNGYGAKLCNI 207
Query: 201 FSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLD 260
FS+KF +ETS +YK +FKQ W NM++ P+I + +DFTKITF+PDL KFKM LD
Sbjct: 208 FSTKFTLETSSRDYKSAFKQTWIKNMTRDEEPKIVKSTDEDFTKITFSPDLAKFKMKELD 267
Query: 261 KDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENV 320
D+ L+ RRAYD A S+K V VFLNG+++P+K F+DYV++YT + + +G+P+KI YE V
Sbjct: 268 DDICHLMARRAYDVAGSSKGVAVFLNGKRIPIKGFEDYVQMYTSQFNNEGEPLKIAYEQV 327
Query: 321 NPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTII 380
RW+VA+A S++GFQQVSFVNSIATTKGGRHVD V D +V + I+ +K+K
Sbjct: 328 GDRWQVALALSEKGFQQVSFVNSIATTKGGRHVDYVADQMVAKFIDSIKRK--------- 378
Query: 381 MLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTK 440
+ KT M +KPFQ+KNH+W+F+NCLI NPTFDSQTK
Sbjct: 379 ----------------LTKT---------SMNIKPFQIKNHMWVFVNCLIENPTFDSQTK 413
Query: 441 ENMTLQKGSFGSTCV--------------------------------------------- 455
E MTLQ+ FGSTCV
Sbjct: 414 ETMTLQQKQFGSTCVLSEKFSKAASSVGITDAVMSWVRFKQMDDLNKKCSKTKTSKLKGI 473
Query: 456 PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATH 515
PKLEDANDAGTKNS CTLILTEGDSAK+LAVSGL VVGRDKYGVFPLRGKLLNVRE
Sbjct: 474 PKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDKYGVFPLRGKLLNVREGNM 533
Query: 516 KQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIH 575
KQI +NAE+N ++KILGLQY KKY T +D KTLRYG+LM+M DQDQDGSHIKGL+INFIH
Sbjct: 534 KQIADNAEVNAMIKILGLQYKKKYETEDDFKTLRYGKLMVMADQDQDGSHIKGLVINFIH 593
Query: 576 HNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
H WP+L++ F+EEFITPI+KATK +EE+SFYSLPE+ EW+ T NW +YKIKYYK
Sbjct: 594 HFWPSLIQRNFVEEFITPIVKATKGKEEVSFYSLPEYSEWRMNTDNWKSYKIKYYK 649
Score = 157 bits (398), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 70/115 (60%), Positives = 88/115 (76%), Gaps = 1/115 (0%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPEWY PIIPMVLVNGA+GIGTGW T IPN+NPRE+V NIKR+I GE + PWYKN
Sbjct: 870 RIEPEWYCPIIPMVLVNGAQGIGTGWSTNIPNYNPRELVKNIKRLIAGEPQKALAPWYKN 929
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKD-TLDTLLHGAEK 772
F+G+I SRF GE+A+LDD+ +EITEL + +WT DYK+ L+ L+ ++K
Sbjct: 930 FRGKIIQIDPSRFACYGEVAVLDDNTIEITELPIKQWTQDYKEKVLEGLMESSDK 984
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 9/101 (8%)
Query: 800 EEEEIEEVFHDNELAKPQKTGPQLERQERQAAEGEDDEA-GSQTQEEEDPDKDYDYLLGM 858
EE++++E+ E+ +L+ + A E+DEA S + E DYDYL+GM
Sbjct: 1128 EEQKLKELRESGEI--------ELDEDDLAAVAVEEDEAISSAAKAVETKLSDYDYLVGM 1179
Query: 859 TFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
L+ E KN+L+K+ ++KM E+ +++KK DLW +DLD
Sbjct: 1180 ALIKLSEEEKNKLIKESEEKMAEVRVIEKKTWQDLWHEDLD 1220
>sp|P08096|TOP2_SCHPO DNA topoisomerase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=top2 PE=1 SV=2
Length = 1485
Score = 618 bits (1594), Expect = e-175, Method: Compositional matrix adjust.
Identities = 318/643 (49%), Positives = 406/643 (63%), Gaps = 111/643 (17%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQ+ + EH+L RPDTYIGS+EP T MW+ + E N ++ + +TYVPGLYKIFDEI+VNA
Sbjct: 78 YQRLTPREHVLRRPDTYIGSIEPTTSEMWVFDSEKNKLDYKAVTYVPGLYKIFDEIIVNA 137
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP MN +K+T++ E N IS++NNGKGIP+ H EK+++P +IFG+LLTSSNY
Sbjct: 138 ADNKVRDPNMNTLKVTLDPEANVISIYNNGKGIPIEIHDKEKIYIPELIFGNLLTSSNY- 196
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
+D + KVTGGRNGYGAKLCNIFS++FVVET+ E
Sbjct: 197 ------------------------DDNQKKVTGGRNGYGAKLCNIFSTEFVVETADKERM 232
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
K +KQ W DNMS+ + P I S K D++TKITF PDL KF M +D DMV +I RR YD
Sbjct: 233 KKYKQTWYDNMSRKSEPVITSLKKPDEYTKITFKPDLAKFGMDKIDDDMVSIIKRRIYDM 292
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDE-DGDPVKIIYENVNPRWEVAIAPSDR 333
A + ++ KV+LN E++ + F+ YV++Y + D +P ++IYE+VN RW+VA A SD
Sbjct: 293 AGTVRETKVYLNNERISISGFKKYVEMYLASDTKPDEEPPRVIYEHVNDRWDVAFAVSDG 352
Query: 334 GFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNN 393
F+QVSFVN+I+T +GG HV+ V + IV I EVVKK+NK
Sbjct: 353 QFKQVSFVNNISTIRGGTHVNYVANKIVDAIDEVVKKENKK------------------- 393
Query: 394 KLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGST 453
+K FQ+KN++ +F+NC I NP+FDSQTKE +T + +FGS
Sbjct: 394 -----------------APVKAFQIKNYVQVFVNCQIENPSFDSQTKETLTTKVSAFGSQ 436
Query: 454 C--------------------------------------------VPKLEDANDAGTKNS 469
C + KLEDAN AGTK S
Sbjct: 437 CTLSDKFLKAIKKSSVVEEVLKFATAKADQQLSKGDGGLRSRITGLTKLEDANKAGTKES 496
Query: 470 IDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVK 529
C LILTEGDSAKSLAVSGL VVGRD YGVFPLRGKLLNVREA+H QIL N EI + K
Sbjct: 497 HKCVLILTEGDSAKSLAVSGLSVVGRDYYGVFPLRGKLLNVREASHSQILNNKEIQAIKK 556
Query: 530 ILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLE 588
I+G + K YT D+K LRYG LMIMTDQD DGSHIKGLIIN++ ++P+LL++P FL
Sbjct: 557 IMGFTHKKTYT---DVKGLRYGHLMIMTDQDHDGSHIKGLIINYLESSYPSLLQIPGFLI 613
Query: 589 EFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+FITPIIK T+ + +FY+LPE+E WKE N +KIKYYK
Sbjct: 614 QFITPIIKCTRGNQVQAFYTLPEYEYWKEANNNGRGWKIKYYK 656
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 79/113 (69%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPE+Y+PI+PMVLVNGAEGIGTGW T IPN+NP++I N++ M+ GE M PWY+ F
Sbjct: 866 IEPEYYVPILPMVLVNGAEGIGTGWSTFIPNYNPKDITANLRHMLNGEPLEIMTPWYRGF 925
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
+G I R+ ++G I + ++K+EITEL + WT D K+ L+ L G EK
Sbjct: 926 RGSITKVAPDRYKISGIINQIGENKVEITELPIRFWTQDMKEYLEAGLVGTEK 978
Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 57/89 (64%), Gaps = 4/89 (4%)
Query: 813 LAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELL 872
++KP+K L E + A E++++G +Q+E D D Y+YLL M WSLT ER ELL
Sbjct: 1114 ISKPKKG--HLVDLEVENALAEEEQSGDVSQDE-DSDA-YNYLLSMPLWSLTYERYVELL 1169
Query: 873 KKRDDKMTELNILKKKAPTDLWSDDLDAL 901
KK+D+ M EL+ L KK P +LW DLDA
Sbjct: 1170 KKKDEVMAELDALIKKTPKELWLHDLDAF 1198
>sp|Q9Y8G8|TOP2_PENCH DNA topoisomerase 2 OS=Penicillium chrysogenum GN=TOP2 PE=3 SV=1
Length = 1587
Score = 585 bits (1507), Expect = e-165, Method: Compositional matrix adjust.
Identities = 308/656 (46%), Positives = 399/656 (60%), Gaps = 119/656 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+V + YQK +QLEHI+ RPDTY+GS E T+ MW+ + E+ ME RE++YVPGLYKIFDE
Sbjct: 63 NVSEKYQKLTQLEHIIKRPDTYVGSTERTTQHMWVYSSESEGMEYREVSYVPGLYKIFDE 122
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
I+VNA DNKQ D M+ I++T+++E+ ISVWNNG+GIP+ H EKM+VP +IF
Sbjct: 123 IVVNAADNKQNDKNMDEIRVTIDRESGEISVWNNGRGIPIEMHSKEKMYVPELIF----- 177
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
GHLLTSSNY+D + KVTGGRNG+GAKLCN+FS++F +ET
Sbjct: 178 --------------------GHLLTSSNYDDTQMKVTGGRNGFGAKLCNVFSTEFTIETQ 217
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270
S KK +KQ W +NM+K+ +I D+TK+TF PD KF MT +D D L+ RR
Sbjct: 218 DSRQKKKYKQTWTENMTKMGKAKITDAKGADYTKVTFKPDYAKFGMTGMDDDFEALVKRR 277
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD---RQDEDGDPV---KIIYENVNPRW 324
YD A + K V V LNG ++P++NF+ Y+++YT R+ D P +II + +PRW
Sbjct: 278 VYDLAGTAK-VAVKLNGSRIPIRNFKMYMEMYTKAIRRERGDMGPAGKNEIITCSPDPRW 336
Query: 325 EVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFG 384
EV A SD FQQVSFVNSIA T GG HV+ + D I ++ E VKKKNK+
Sbjct: 337 EVGFAVSDGAFQQVSFVNSIAITSGGTHVNYIADQICSKLAEQVKKKNKN---------- 386
Query: 385 NKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT 444
G LKP Q++NHI+IF+N LIVNP F SQTKE +T
Sbjct: 387 -------------------------GATLKPAQIRNHIFIFVNALIVNPAFTSQTKEQLT 421
Query: 445 LQKGSFGSTCV-------------------------------------------PKLEDA 461
++ FGS CV PKL DA
Sbjct: 422 TKQSQFGSKCVLEEDFYKKILKTEVMTNILHFAQQKADQMLKKTDGGRRSRMNNPKLTDA 481
Query: 462 NDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILEN 521
N AGTK CTLILTEGDSAK LA++G VVG D +GVFPLRGKLLNVR+A+ QI +N
Sbjct: 482 NKAGTKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASFDQIAKN 541
Query: 522 AEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTL 581
EI N+ +GLQ+ K+YT D + LRYG LMI TDQD DGSHIKGL+INF+ +P+L
Sbjct: 542 QEIQNIKNFIGLQHKKEYT---DTRGLRYGHLMITTDQDHDGSHIKGLLINFLQAQFPSL 598
Query: 582 LRLP-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
L++P FL EFITPI+K K ++ SF+++PE+E WKEE + ++ KYYK
Sbjct: 599 LKIPEFLIEFITPIVKVWKGDPKNPTKQRSFFTMPEYEAWKEEHGHERGWEHKYYK 654
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 81/115 (70%), Gaps = 1/115 (0%)
Query: 658 GRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYK 717
+IE E Y+P++PM+L+NGA+GIGTGW + PN+NP +IV+N+KRM+ GE PM+PW++
Sbjct: 862 AKIEQEVYVPVVPMILINGADGIGTGWSSSTPNYNPEDIVENLKRMMDGEPLKPMQPWFR 921
Query: 718 NFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
F GE+ G RF +G I D ++EITEL + WT D+KD L+ ++ AEK
Sbjct: 922 GFTGEVTAVGQDRFKFSGIIKETGDKEVEITELPIRTWTQDFKDKLEDIIK-AEK 975
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
YDYLLGM WSLT ER +L ++ DK E++ L K + D+W DL+
Sbjct: 1144 YDYLLGMPIWSLTQERVEKLRRQIGDKELEIDTLIKLSKEDIWKRDLE 1191
>sp|O24308|TOP2_PEA DNA topoisomerase 2 OS=Pisum sativum GN=TOP2 PE=2 SV=1
Length = 1462
Score = 583 bits (1504), Expect = e-165, Method: Compositional matrix adjust.
Identities = 317/650 (48%), Positives = 406/650 (62%), Gaps = 115/650 (17%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E++YQKK+QLEHILLRPDTY+GS+E T+ +W+ E + M R ++YVPGLYKIFDE
Sbjct: 18 TIEEMYQKKTQLEHILLRPDTYVGSIEKHTQNLWVY--ENDEMVHRAVSYVPGLYKIFDE 75
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNKQRDP M+ +K+T++ E NT+SV+NNG G+PV H++EK++VP +IF
Sbjct: 76 ILVNAADNKQRDPSMDSLKVTIDPEANTVSVYNNGDGVPVEIHQEEKVYVPELIF----- 130
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
GHLLTSSNY+D K TGGRNGYGAKL NIFS++F++ET+
Sbjct: 131 --------------------GHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETA 170
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
K +KQV+ +NM P I K + +++TK+TF PDL KFKM L++D+V L+ +
Sbjct: 171 DGRRLKKYKQVFSNNMGTKCEPVITKCKASENWTKVTFKPDLEKFKMAYLEEDVVALMKK 230
Query: 270 RAYDAAAS-TKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGD-PVKIIYENVNPRWEVA 327
R D A K VKV LNG + K+F+DY L+ ++ P+ I+ V RWE+
Sbjct: 231 RVLDMAGCFGKTVKVELNGTLIRFKSFRDYADLFLKCAEKSKPMPLPRIHAKVGDRWEIC 290
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKF 387
I+ SD FQQVSFVNSIAT KGG HVD + + I I+ V KK KD
Sbjct: 291 ISLSDGQFQQVSFVNSIATIKGGTHVDYITNQITTYIMNKVNKKKKDAN----------- 339
Query: 388 NNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
+K VKNH+W+F+N LI NP FDSQTKE +T ++
Sbjct: 340 -------------------------VKAHTVKNHLWVFVNSLIDNPAFDSQTKETLTTRQ 374
Query: 448 GSFGSTC-VP------------------------------------------KLEDANDA 464
SFGS C VP K EDAN+A
Sbjct: 375 ASFGSKCDVPESMLKDVEKSGIVDTLLSWADFKQSKDLKKTDGTKTQRLRGCKAEDANEA 434
Query: 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEI 524
G +NS CTLILTEGDSAK+LA++GL VVGRD YGVFPLRGKLLNVREA+ KQI++N EI
Sbjct: 435 GGRNSEKCTLILTEGDSAKALAMAGLSVVGRDHYGVFPLRGKLLNVREASSKQIMDNEEI 494
Query: 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL 584
N+ KILGLQ +K+YT V K+LRYG LMIM DQD DGSHIKGL+INFIH WP+LL++
Sbjct: 495 QNIKKILGLQQNKEYTNV---KSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPSLLKV 551
Query: 585 P-FLEEFITPIIKATKAREEL-SFYSLPEFEEWKEETTNWHT-YKIKYYK 631
P FL EF TP+I+A+ + + SFYS+PE+E WKE N T +KIKYYK
Sbjct: 552 PSFLVEFTTPVIRASHPNKTITSFYSMPEYEAWKERLGNSATSWKIKYYK 601
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 83/112 (74%), Gaps = 1/112 (0%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY+PIIP+VLVNG+EGIGTGW + IPN+NPREI+ N++R++ GE+ +PM PWYK F
Sbjct: 792 IEPNWYMPIIPLVLVNGSEGIGTGWSSYIPNYNPREIIANVRRLLNGEELVPMDPWYKGF 851
Query: 720 KGEIDYCG-DSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGA 770
+G I+ + ++VNG + +D+ ITEL + KWT DYK L+++ GA
Sbjct: 852 RGTIEKSAKEGGYIVNGTVTEIDEQTFRITELPIRKWTQDYKQFLESITDGA 903
Score = 36.6 bits (83), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 50/120 (41%), Gaps = 14/120 (11%)
Query: 815 KPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPD-KDYDYLLGMTFWSLTMERKNELLK 873
KPQ G + E Q E + E SQ+ E DYD LL + +LT+E +LL
Sbjct: 1049 KPQVAGANDDDSEEQ--EDAEPETASQSVSVEGATWGDYDDLLSLPIGTLTLESVQKLLD 1106
Query: 874 KRDDKMTELNILKKKAPTDLWSDDLDALREK-----------DKIHPCPGGNRTRGLALK 922
++ +K E IL T LW DLD +K D+ G + G A K
Sbjct: 1107 EKTEKEKEYEILSGTPTTSLWLKDLDEFEKKLDELDLKYAEDDRKRASQGSKKANGFASK 1166
>sp|P30182|TOP2_ARATH DNA topoisomerase 2 OS=Arabidopsis thaliana GN=TOP2 PE=2 SV=2
Length = 1473
Score = 578 bits (1490), Expect = e-163, Method: Compositional matrix adjust.
Identities = 326/674 (48%), Positives = 418/674 (62%), Gaps = 122/674 (18%)
Query: 14 QNGNGPS-----PKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNR 68
QN N + K + A ++E++YQKKSQLEHILLRPDTYIGS+E T+T+W+
Sbjct: 8 QNSNAANVAKAPAKSRAAAGGKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQTLWVY-- 65
Query: 69 ETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGI 128
E + M +R +TYVPGLYKIFDEILVNA DNKQRD KM+ +++ ++ E N ISV N+G G+
Sbjct: 66 EKDEMVQRPVTYVPGLYKIFDEILVNAADNKQRDAKMDSVQVVIDVEQNLISVCNSGAGV 125
Query: 129 PVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTG 188
PV H++E ++VP MIFGHLLTSSN Y+D K TG
Sbjct: 126 PVEIHQEEGIYVPEMIFGHLLTSSN-------------------------YDDNVKKTTG 160
Query: 189 GRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITF 247
GRNGYGAKL NIFS++F++ET+ + K +KQV+++NM K + P I K +++TK+TF
Sbjct: 161 GRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFENNMGKKSEPVITKCNKSENWTKVTF 220
Query: 248 TPDLTKFKMTSLDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQ 306
PDL KF MT L+ D+V L+++R +D A K VKV LNG+++PVK+F DYV LY
Sbjct: 221 KPDLKKFNMTELEDDVVALMSKRVFDIAGCLGKSVKVELNGKQIPVKSFTDYVDLYLSAA 280
Query: 307 DEDG--DPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQI 364
++ DP+ + E VN RWEV ++ S+ FQQVSFVNSIAT KGG HVD V I I
Sbjct: 281 NKSRTEDPLPRLTEKVNDRWEVCVSLSEGQFQQVSFVNSIATIKGGTHVDYVTSQITNHI 340
Query: 365 IEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWI 424
+ V KKNK+ +K VKNH+W+
Sbjct: 341 VAAVNKKNKN------------------------------------ANVKAHNVKNHLWV 364
Query: 425 FINCLIVNPTFDSQTKENMTLQKGSFGSTC------------------------------ 454
F+N LI NP FDSQTKE +TL++ SFGS C
Sbjct: 365 FVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKKVGKSGVVENLLSWADFKQNKD 424
Query: 455 -------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVF 501
V KL+DA +AG KNS CTLILTEGDSAKSLA++G V+G + GVF
Sbjct: 425 LKKSDGAKTGRVLVEKLDDAAEAGGKNSRLCTLILTEGDSAKSLALAGRSVLGNNYCGVF 484
Query: 502 PLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQ 561
PLRGKLLNVREA+ QI N EI NL KILGL+ + KY E++ +LRYG++MIMTDQD
Sbjct: 485 PLRGKLLNVREASTTQITNNKEIENLKKILGLKQNMKY---ENVNSLRYGQMMIMTDQDH 541
Query: 562 DGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATK--AREELSFYSLPEFEEWKEE 618
DGSHIKGL+INFIH WP+LL++P FL EFITPI+KAT+ ++ LSFYS+PE+EEWKE
Sbjct: 542 DGSHIKGLLINFIHSFWPSLLQVPSFLVEFITPIVKATRKGTKKVLSFYSMPEYEEWKES 601
Query: 619 TT-NWHTYKIKYYK 631
N + IKYYK
Sbjct: 602 LKGNATGWDIKYYK 615
Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 77/112 (68%), Gaps = 4/112 (3%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEP WY+PIIP VLVNGAEGIGTGW T IPN+NPREIV N++R++ GE +PM PWY+
Sbjct: 824 RIEPTWYMPIIPTVLVNGAEGIGTGWSTFIPNYNPREIVANVRRLLNGESMVPMDPWYRG 883
Query: 719 FKGEIDYC----GDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL 766
FKG I+ G + + G +D+ + ITEL + +W DYK+ L +L
Sbjct: 884 FKGTIEKTASKEGGCTYTITGLYEEVDETTIRITELPIRRWNDDYKNFLQSL 935
Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 848 PDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
P +YDYLL M SLT+E+ ELL RD + + +KK P LW DL++L
Sbjct: 1113 PGSEYDYLLAMAIASLTIEKVEELLADRDKMIIAVADMKKTTPKSLWLSDLESL 1166
>sp|O93794|TOP2_CANGA DNA topoisomerase 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138
/ JCM 3761 / NBRC 0622 / NRRL Y-65) GN=TOP2 PE=3 SV=2
Length = 1406
Score = 571 bits (1472), Expect = e-161, Method: Compositional matrix adjust.
Identities = 313/657 (47%), Positives = 407/657 (61%), Gaps = 127/657 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEHIL RPDTYIGSVE + W+ + ET+ M + + VPGL+KIFDEILVNA
Sbjct: 11 YQKISQLEHILKRPDTYIGSVEIQEQEQWIYDEETDCMIDKTVNIVPGLFKIFDEILVNA 70
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP M I +T+N E N I V N+GKGIP+ H+ EK+++P +IFGHLLTSSNY+
Sbjct: 71 ADNKVRDPSMKRIDVTINPEENFIEVRNDGKGIPIEIHEKEKIYIPELIFGHLLTSSNYD 130
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
D +E KVTGGRNGYGAKLCNIFS++F +ET+ +
Sbjct: 131 D-------------------------DEKKVTGGRNGYGAKLCNIFSTEFTLETADPKNG 165
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
+ + Q W++NM+ P+I S K +TK+ F PDL++F M SLD D++ ++ RR YD
Sbjct: 166 RKYVQTWENNMNVCHPPKITSYKKGPSYTKVAFKPDLSRFGMESLDSDILGVMRRRVYDI 225
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLY---------TDRQDEDGDPVK---IIYENVNP 322
S +DV V+LNG+ L ++NF++YV+LY D + D P I+YE V+
Sbjct: 226 NGSVRDVNVYLNGKPLKIRNFKNYVELYLKSLEKMRKMDNGESDTTPSNIPTILYERVSD 285
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RWE+A A SD F+QVSFVNSIATT GG HV+ + D IV+++ +++KKK K+
Sbjct: 286 RWEIAFAVSDISFKQVSFVNSIATTTGGTHVNYIADQIVRKVSDILKKKKKN-------- 337
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
+KP+Q+KN+++IFINCLI NP F SQTKE
Sbjct: 338 ------------------------------IKPYQIKNNMFIFINCLIENPAFTSQTKEQ 367
Query: 443 MTLQKGSFGSTC--------------------------------------------VPKL 458
+T + FGS C PKL
Sbjct: 368 LTTRVKDFGSRCDISSDYINKIMKTDLATKIFEIADENANNALKKSDGSRKSRITDYPKL 427
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
EDAN AGTK+ CTLILTEGDSA SLAV+GL VVGRD YG +PLRGK+LNVREAT QI
Sbjct: 428 EDANKAGTKDGYKCTLILTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREATADQI 487
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNW 578
L+NAEI + KI+GLQ+ KKY ED K+LRYG LMIMTDQD DGSHIKGLIINFI ++
Sbjct: 488 LKNAEIQAIKKIMGLQHRKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIINFIETSF 544
Query: 579 PTLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P LL +P FL EFITPI+K T ++ +SF++LP++E+W+EE ++ +++K KYYK
Sbjct: 545 PGLLDIPGFLIEFITPIVKVTITKPIKKVISFFNLPDYEKWREEESHKYSWKQKYYK 601
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 74/113 (65%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+P++PMVL+NGAEGIGTGW T IP NP ++V+NI+ ++ E+ M PW++ +
Sbjct: 811 VEPEWYLPVVPMVLINGAEGIGTGWSTSIPPFNPLDVVNNIRHLLNDEEMDDMHPWFRGW 870
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G ++ R+ + G I + + LEITEL WT+ K+ L L G+EK
Sbjct: 871 TGTMEKIESQRYRMYGRIEQVGPNTLEITELPARTWTSTIKEHLLLGLGGSEK 923
Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
Y+YLLG+ WSLT ER +LLK++ +K TEL L K + DLW++DLD
Sbjct: 1113 YEYLLGLKIWSLTKERYEKLLKQKQEKETELENLLKLSAKDLWNNDLD 1160
>sp|Q01879|TOP2_PICGU DNA topoisomerase 2 OS=Meyerozyma guilliermondii (strain ATCC 6260
/ CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL
Y-324) GN=TOP2 PE=3 SV=3
Length = 1400
Score = 556 bits (1433), Expect = e-157, Method: Compositional matrix adjust.
Identities = 315/705 (44%), Positives = 409/705 (58%), Gaps = 134/705 (19%)
Query: 1 MSSDESDFDPDVQQNGNGPSPKKKT---------PANKMSVEKIYQKKSQLEHILLRPDT 51
S SDF P G P + + PA + ++ YQK SQLEHIL RPDT
Sbjct: 16 FSDASSDFTPSSSVKSKGKVPLRDSTNTTAQPSAPATGDASDQ-YQKLSQLEHILKRPDT 74
Query: 52 YIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKIT 111
YIGSVE MW + T M +E+ VPGLYKIFDEILVNA DNK RDP M IK+
Sbjct: 75 YIGSVEKTGVEMWSFDAATESMIYKEVHIVPGLYKIFDEILVNAADNKIRDPSMRNIKVN 134
Query: 112 VNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFG 171
++ E NTISV N+GKGIP+ HK EK+++P +IF G
Sbjct: 135 IDAENNTISVMNDGKGIPIEIHKKEKIYIPELIF-------------------------G 169
Query: 172 HLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTS 231
+LLTSSNY+D+E KVTGGRNGYGAKLCNIFS++FV+ET+ + +KQ W +NM+ +T
Sbjct: 170 NLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFVLETADLNTSQVYKQTWTNNMANLTK 229
Query: 232 PEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKL 290
P+I K SK ++TK+TF PDL+KF M LD D++ ++ RR YD + KD ++LN +KL
Sbjct: 230 PKITKLKSKKEYTKVTFKPDLSKFHMEMLDDDILSVLRRRVYDLCGTVKDCNIYLNDKKL 289
Query: 291 PVKNFQDYVKLYTDR-QDEDGDPVK----------IIYENVNPRWEVAIAPSDRGFQQVS 339
++NF+ YV++Y + ++ DPV I++E N RWEVA A SD F QVS
Sbjct: 290 SIRNFKSYVEMYVNAIRERSPDPVAPEGETRNYSTIVHEVFNDRWEVAFAVSDGSFNQVS 349
Query: 340 FVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAK 399
FVNSIATT GG HV V D I+ ++I+
Sbjct: 350 FVNSIATTSGGTHVKYVSDQIITKLIDA-------------------------------- 377
Query: 400 TLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS------- 452
L + +KP +V+N++++FINCLI NP F SQTKE +T + FG
Sbjct: 378 -LTKKEKGKKKLNIKPQEVRNNMFVFINCLIENPAFTSQTKEQLTTRVAQFGGKPSEKIV 436
Query: 453 -----------TCVP------------------------------KLEDANDAGTKNSID 471
T + KL DAN AGTK
Sbjct: 437 ISDQFIAKILKTSIADKIRTIVNANEDKEMSKADGSRKSRIKNQVKLVDANKAGTKEGYK 496
Query: 472 CTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKIL 531
CTLILTEGDSA LAV+GL VVGRD YG FPLRGKLLNVREA+ +Q+ +NAEIN++ +I+
Sbjct: 497 CTLILTEGDSAMPLAVAGLTVVGRDYYGCFPLRGKLLNVREASIEQVSKNAEINSIKQIM 556
Query: 532 GLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEF 590
GLQ+ K+YT E++K+LRYG +MIMTDQDQDGSHIKGLIINF+ ++P LL +P FL EF
Sbjct: 557 GLQHKKRYTP-ENIKSLRYGHIMIMTDQDQDGSHIKGLIINFLETSFPGLLEIPGFLLEF 615
Query: 591 ITPIIKATKA----REELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
ITPI+K T + FY++PEFE+W+E +K KY+K
Sbjct: 616 ITPIVKVTITGRGNHRVIPFYNMPEFEKWRETEGTTCKWKHKYFK 660
Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 78/104 (75%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPE Y+PIIPM+LVNGAEGIGTGW T IP+ NP +IV NI+RM+ GE+P+ M PW+K +
Sbjct: 870 VEPEAYLPIIPMLLVNGAEGIGTGWSTNIPSFNPVDIVANIRRMMNGEEPVDMTPWFKGW 929
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTL 763
+G+++ ++ V+G+I +DDD +EITE+ + WT K+ L
Sbjct: 930 EGDLERISPEKYKVSGKIEQVDDDTVEITEIPIKTWTNSVKEFL 973
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 36/48 (75%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
YDYLLGM WSLT ER +LL++RD+K ELN L KK+ DLW+ DLD
Sbjct: 1168 YDYLLGMAIWSLTRERYEKLLRQRDEKQEELNELLKKSAKDLWNSDLD 1215
>sp|P06786|TOP2_YEAST DNA topoisomerase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=TOP2 PE=1 SV=2
Length = 1428
Score = 556 bits (1432), Expect = e-157, Method: Compositional matrix adjust.
Identities = 308/657 (46%), Positives = 398/657 (60%), Gaps = 126/657 (19%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK SQLEHIL RPDTYIGSVE + W+ + ET+ M + +T VPGL+KIFDEILVNA
Sbjct: 12 YQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNA 71
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
DNK RDP M I + ++ E +TI V N+GKGIP+ H E +++P MIF
Sbjct: 72 ADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIF---------- 121
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
GHLLTSSNY+D+E KVTGGRNGYGAKLCNIFS++F++ET+
Sbjct: 122 ---------------GHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVG 166
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
+ + Q W++NMS P+I S K +TK+TF PDLT+F M LD D++ ++ RR YD
Sbjct: 167 QKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDI 226
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYTD-----RQDEDG-------DPVKIIYENVNP 322
S +D+ V+LNG+ L ++NF++YV+LY RQ ++G D I+YE +N
Sbjct: 227 NGSVRDINVYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINN 286
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RWEVA A SD FQQ+SFVNSIATT GG HV+ + D
Sbjct: 287 RWEVAFAVSDISFQQISFVNSIATTMGGTHVNYITD------------------------ 322
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
Q+ K + +I + ++K FQ+KN+++IFINCLI NP F SQTKE
Sbjct: 323 -------------QIVKKISEILKKKKKKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQ 369
Query: 443 MTLQKGSFGSTC--------------------------------------------VPKL 458
+T + FGS C PKL
Sbjct: 370 LTTRVKDFGSRCEIPLEYINKIMKTDLATRMFEIADANEENALKKSDGTRKSRITNYPKL 429
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQI 518
EDAN AGTK CTL+LTEGDSA SLAV+GL VVGRD YG +PLRGK+LNVREA+ QI
Sbjct: 430 EDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQI 489
Query: 519 LENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNW 578
L+NAEI + KI+GLQ+ KKY ED K+LRYG LMIMTDQD DGSHIKGLIINF+ ++
Sbjct: 490 LKNAEIQAIKKIMGLQHRKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSF 546
Query: 579 PTLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P LL + FL EFITPIIK + + ++FY++P++E+W+EE ++ T+K KYYK
Sbjct: 547 PGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYYK 603
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 73/113 (64%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PI+PM+LVNGAEGIGTGW T IP NP EI+ NI+ ++ E+ M PW++ +
Sbjct: 813 VEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGW 872
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK 772
G I+ R+ + G I + D+ LEITEL WT+ K+ L L G +K
Sbjct: 873 TGTIEEIEPLRYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDK 925
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901
Y+YLLGM WSLT ER +LLK++ +K TEL L K + D+W+ DL A
Sbjct: 1113 YEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAF 1162
>sp|Q55BP5|TOP2_DICDI Probable DNA topoisomerase 2 OS=Dictyostelium discoideum GN=top2
PE=3 SV=1
Length = 1521
Score = 546 bits (1406), Expect = e-154, Method: Compositional matrix adjust.
Identities = 303/652 (46%), Positives = 393/652 (60%), Gaps = 122/652 (18%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
S+E+IYQKK L+ ILLRPDTYIGS E E +W+ E M R++++VPG+YKIFDE
Sbjct: 102 SIEEIYQKKELLDQILLRPDTYIGSTERQEEELWVW--EDKRMVHRKVSFVPGIYKIFDE 159
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNKQR+ M IK+ +++E ISV N+G GIP+ H + K+++P +IFG+LLT
Sbjct: 160 ILVNAADNKQREGNMKFIKVVIDREKGFISVTNDGAGIPIQVHSEHKIYIPELIFGNLLT 219
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
SS+Y +D E ++TGGRNG+GAKL NIFS+KF+VE +
Sbjct: 220 SSHY-------------------------DDSEKRLTGGRNGFGAKLANIFSTKFIVECA 254
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269
S+ KK +KQ + +NM P+I S +K D+TKITF P+L +F M D D+V L+++
Sbjct: 255 DSKSKKLYKQTFTNNMRSKEDPKITSYQNKTDYTKITFYPELDRFGMVEFDDDLVALLSK 314
Query: 270 RAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIA 329
R YD A +KV LN E+L +++F+ Y+ LY DE+ P K+ YE V+ RWE+A+
Sbjct: 315 RVYDIAGCNPTLKVSLNDEELGIRSFEKYINLYF--PDEENAP-KVYYEKVSDRWELAVT 371
Query: 330 PS-DRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFN 388
S + F QVSFVNSI T KGG HV + IV I E V KKNK
Sbjct: 372 LSKESQFNQVSFVNSICTVKGGTHVTHALSNIVTAIQEQVNKKNK--------------- 416
Query: 389 NVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG 448
G +KP +KNH+ +F+NCLI NP FDSQTKE +T +
Sbjct: 417 --------------------GSADIKPAFIKNHLSVFVNCLIENPHFDSQTKETLTSKIS 456
Query: 449 SFGSTC-----------------------------------------------VPKLEDA 461
SFGS C +PKL+DA
Sbjct: 457 SFGSRCEPSEKFIKRVLDSKSGIVASILEFAQFKDQSALKRSTSSGGKKGKVSIPKLDDA 516
Query: 462 NDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILEN 521
N AG S DCTLILTEGDSAKSLA +G+ VVG+D YG FPL+GKLLNVR+ + K ++ N
Sbjct: 517 NLAGGTKSEDCTLILTEGDSAKSLATAGISVVGKDHYGAFPLKGKLLNVRDQSTK-VINN 575
Query: 522 AEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTL 581
EINN+V ILGL+Y K Y T+ D LRYG LMIMTDQD DGSHIKGLIIN +HH WPTL
Sbjct: 576 DEINNIVTILGLKYGKVYETLSD---LRYGHLMIMTDQDHDGSHIKGLIINMVHHFWPTL 632
Query: 582 LRLP-FLEEFITPIIKATKAREE-LSFYSLPEFEEWKEETTNWHTYKIKYYK 631
LR+P FL EFITPI+K K ++ +SFY++PEF +W+E TN + +KYYK
Sbjct: 633 LRMPGFLVEFITPIVKVFKNNQKPISFYTMPEFLKWRE--TNDKGWDVKYYK 682
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 96/162 (59%), Gaps = 14/162 (8%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+++P++YIP+IPM+LVNG GIGTGW + IPN+NPR+++ N++ I G+ P+KPWY+
Sbjct: 891 KVQPKFYIPVIPMILVNGCVGIGTGWSSTIPNYNPRDLIQNMRLAIDGKPLKPIKPWYRG 950
Query: 719 FKGEIDYCGDSR-----FVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTL------- 766
F G I+ S+ ++ G L D++ EITEL +G WT DY++ LD L
Sbjct: 951 FLGSIEANQGSKVQGGQYLSKGIWKKLSDNRFEITELPIGFWTQDYRELLDELETPGTRK 1010
Query: 767 -LHGAEKDEVHPGPGRKSHPRPIAPKSYKIDDDSEEEEIEEV 807
++ + G K+ P +S ++DDD + E++ E
Sbjct: 1011 KKKEEKEKKAASRKGTKAKP-TTTKRSKRVDDDDDNEKVTEA 1051
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 7/127 (5%)
Query: 827 ERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILK 886
E AA D+E +E++D K YDYLL + WSLT+ER +L+++RD K E +IL
Sbjct: 1202 EEDAAISSDEEKDGAQEEQDDDTKGYDYLLSLPLWSLTLERVKKLIEERDSKKKEWDILL 1261
Query: 887 KKAPTDLWSDDLDALR---EKDKIHPCPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVV 943
+++ DLDAL + + N+T L + +T+ P + ++++ VV
Sbjct: 1262 STPIQEIYKRDLDALEKALDDQDAYDESLKNQTESLKKRTKTKALPRAKKISAK----VV 1317
Query: 944 SSGEDAP 950
++AP
Sbjct: 1318 KDTKEAP 1324
>sp|P87078|TOP2_CANAX DNA topoisomerase 2 OS=Candida albicans GN=TOP2 PE=3 SV=1
Length = 1461
Score = 543 bits (1398), Expect = e-153, Method: Compositional matrix adjust.
Identities = 315/722 (43%), Positives = 411/722 (56%), Gaps = 150/722 (20%)
Query: 1 MSSDESDFDPDVQQNGNGPSPKKKTPANKMSVEK-------------------------- 34
MS ESD+ D ++ P+ KK T N S K
Sbjct: 1 MSESESDYFTDGSEDDFVPTSKKSTKKNASSKSKQPLGDATNSTVSSSRSSTPKPTNASE 60
Query: 35 IYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVN 94
YQK SQLEHIL RPDTYIGSVE MW + ET M +E+T VPGLYKIFDEILVN
Sbjct: 61 TYQKLSQLEHILKRPDTYIGSVEKTKTEMWCFDAETESMVFKEVTIVPGLYKIFDEILVN 120
Query: 95 ACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
A DNK RDP M I++ ++ E N I V N+GKGIP+ H E M++P +IF
Sbjct: 121 AADNKIRDPSMKNIRVKIDAENNIIEVMNDGKGIPIEMHTKENMYIPELIF--------- 171
Query: 155 NDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEY 214
G+LLTSSNY+D++ KVTGGRNG+GAKLCNIFS++F VET+
Sbjct: 172 ----------------GNLLTSSNYDDDQKKVTGGRNGFGAKLCNIFSTQFEVETADLNM 215
Query: 215 KKSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYD 273
K +KQ W +NMS V+ P+I + +K ++TKITF PDL+KF M LD D++ ++ RR YD
Sbjct: 216 GKLYKQSWTNNMSNVSKPKITTLRTKKEYTKITFRPDLSKFDMDCLDNDLLSVLRRRVYD 275
Query: 274 AAASTKDVKVFLNGEKLPVKNFQDYVKLYT--------DRQDEDG---DPVKIIYENVNP 322
+ K+ ++LN ++L + +F+ YV++Y + + +DG + I++E N
Sbjct: 276 LCGTVKNCNIYLNDKRLNISSFKGYVEMYVKAIKERSPEPEPQDGTIKNFTTIVHEVFND 335
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
RWEVA A SD F QVSFVNSIATT GG HV V D I+ +++E
Sbjct: 336 RWEVAFAVSDGSFNQVSFVNSIATTSGGTHVKYVSDQIINKLVE---------------- 379
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
TL + +KP +V++++++FINCLI NP F SQTKE
Sbjct: 380 -----------------TLSKKEKGKKKLMIKPQEVRDNMFLFINCLIENPAFTSQTKEQ 422
Query: 443 MTLQKGSFG-----------------STCVPK---------------------------- 457
+T + FG ++ V K
Sbjct: 423 LTTKVSQFGGKDKFVANDNLINRILKTSIVDKIRAIANANEDKALQKADGSRKSRIKGQV 482
Query: 458 -LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
L DAN AGTK+ +CTLILTEG SA +LAV+GL VVGRD YG FPLRGKLLNVREA+
Sbjct: 483 NLVDANKAGTKDGHNCTLILTEGLSAMNLAVAGLSVVGRDYYGCFPLRGKLLNVREASAD 542
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI +NAEIN+L +I+GLQ+ K Y T E++K+LRYG +MIMTDQDQDGSHIKGLIINF+
Sbjct: 543 QISKNAEINSLKQIIGLQHKKVY-TAENIKSLRYGHIMIMTDQDQDGSHIKGLIINFLET 601
Query: 577 NWPTLLRLP-FLEEFITPIIKAT-KAR-----EELSFYSLPEFEEWKEETTNWHTYKIKY 629
++P LL +P FL EFITPI+K T KAR + FY++PEFE W++ + KY
Sbjct: 602 SFPGLLDIPGFLLEFITPIVKVTVKARGAGGKRVIPFYTMPEFEHWRDTEGKQCRWTQKY 661
Query: 630 YK 631
YK
Sbjct: 662 YK 663
Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 83/118 (70%), Gaps = 3/118 (2%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+P++PM+LVNGAEGIGTGW T IP++NP+++V NI+R++ GE+ M PWYK +
Sbjct: 873 VEPEWYLPVLPMILVNGAEGIGTGWSTNIPSYNPKDLVTNIRRLMNGEELQEMTPWYKGW 932
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDEVHP 777
G+++ G +F V+G I +D + +EITE+ V WT + K + LL G ++ P
Sbjct: 933 GGDLEPMGPQKFKVSGRIEQIDSNTVEITEIPVKTWTNNVK---EFLLSGFGNEKTQP 987
Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 852 YDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDA-LREKDKI 907
YDYLLGM WSLT ER ++++RD K ELN L K+ DLW+ DLD L E DK
Sbjct: 1180 YDYLLGMAIWSLTYERFMRIMQQRDQKEAELNALLSKSAKDLWNQDLDEFLAEFDKF 1236
>sp|P90520|TOP2M_DICDI DNA topoisomerase 2, mitochondrial OS=Dictyostelium discoideum
GN=top2mt PE=2 SV=2
Length = 1284
Score = 508 bits (1308), Expect = e-142, Method: Compositional matrix adjust.
Identities = 291/698 (41%), Positives = 392/698 (56%), Gaps = 160/698 (22%)
Query: 32 VEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREI------------- 78
+E IYQKK+ EH+LLRPD+YIG++E I + MW+++ + E++ I
Sbjct: 87 IEDIYQKKTPTEHVLLRPDSYIGTIEKIEDDMWVLSNSMFNKEKKTIELNNDNNEKNVES 146
Query: 79 ---------------------TYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN 117
TY+PGL KI+DEILVNA DNK+RD KM+ IK+ +N N
Sbjct: 147 TTTTTTKTNKKPLTYIHPIKATYIPGLLKIYDEILVNAADNKKRDSKMSFIKVEINPNEN 206
Query: 118 TISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSS 177
+IS+ N+GKGIPVV H+ E +V M+ G+L++ SN+
Sbjct: 207 SISIMNDGKGIPVVMHQTENCYVVEMVMGNLMSGSNF----------------------- 243
Query: 178 NYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIK-- 235
ND E KV GGRNG+GAKL NIFS +F VET K + Q W +NM + P I
Sbjct: 244 --NDSELKVVGGRNGFGAKLTNIFSKEFTVETVDKSSGKKYFQRWSNNMGDRSEPIITPI 301
Query: 236 SGSKDDFTKITFTPDLTKFKMTSL-DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKN 294
+ D+TKITF PDL KFK+ SL D +++ L+ RR YD A ++ V LNG++L N
Sbjct: 302 GEGESDYTKITFKPDLEKFKIKSLWDDNILQLMERRLYDIAGCNTELMVTLNGKRLNY-N 360
Query: 295 FQDYVKLY-------TDRQDEDGDPVKIIYE--NVNPRWEVAIAPSDRG-FQQVSFVNSI 344
FQ YVKLY T R+D + + +E ++PRW++ I S+ G F QVSFVNSI
Sbjct: 361 FQSYVKLYEHHLNNSTKREDNEEQYREESFEFGEISPRWKIGIGLSETGQFTQVSFVNSI 420
Query: 345 ATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDI 404
T KGG HV+ + D IV+ + E +KKK+ DL
Sbjct: 421 NTVKGGTHVNFLADQIVRYVGEKLKKKHSDL----------------------------- 451
Query: 405 GVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGST----------- 453
++P +K+H+ +F+NCL+ NP+FDSQ+KE +T + FGST
Sbjct: 452 -------EIRPMNIKHHLALFVNCLVDNPSFDSQSKETLTTKPMLFGSTPEIPESLLAQF 504
Query: 454 -------------------------------------CVPKLEDANDAGTKNSIDCTLIL 476
+ KL+DAN AG S +CTLI+
Sbjct: 505 VKNSKIIERVAGWALMKQKADLIHSTSGRQSKTTLIKSISKLDDANWAGGLKSKECTLII 564
Query: 477 TEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYS 536
TEGDSAKSLA++GL VVGR+ YGVFPLRGKLLNVR+ KQ+L N EINNL ILGL +
Sbjct: 565 TEGDSAKSLALAGLSVVGRNSYGVFPLRGKLLNVRDVASKQLLSNEEINNLTTILGLSHK 624
Query: 537 KKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIK 596
Y T E M+ LRYGR+MIM DQD DGSHIKGL++NFIH+ WP LL+ FL EF+TPIIK
Sbjct: 625 NSYDTDESMEDLRYGRVMIMADQDHDGSHIKGLVMNFIHYFWPNLLKRGFLVEFVTPIIK 684
Query: 597 ATKAR-EELSFYSLPEFEEWKEETTN--WHTYKIKYYK 631
ATK+ ++ SF+++ ++E+W+E ++ Y IKYYK
Sbjct: 685 ATKSSTQKKSFFTIKDYEKWRETISSDQLKQYTIKYYK 722
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 75/111 (67%), Gaps = 7/111 (6%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMK---PWY 716
I+P++YIPIIPM+LVNG+EGIG G T IP +P +I+D + M+R + + +K PWY
Sbjct: 931 IQPDYYIPIIPMLLVNGSEGIGVGMSTSIPLFSPIDIIDQL--MLRLNNQVALKKLIPWY 988
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
+ FKG I + NG I ++ + LEITEL +G+WT+DYK+ L+ L+
Sbjct: 989 RGFKGTIS-PDRHTYRTNGVIKLVGRN-LEITELPIGRWTSDYKEVLNDLI 1037
>sp|P34534|TOP2M_CAEEL Putative DNA topoisomerase 2, mitochondrial OS=Caenorhabditis
elegans GN=R05D3.12 PE=3 SV=5
Length = 1170
Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust.
Identities = 276/657 (42%), Positives = 372/657 (56%), Gaps = 132/657 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPIT-ETMWLMNRETNHMERREITYVPGLYKIFDEILVN 94
Y+KKS EH+LLRPDTYIG V + +WL + E M +E+TY PGL KIFDEILVN
Sbjct: 47 YEKKSPTEHVLLRPDTYIGGVAMREDQIIWLRDSENRKMIAKEVTYPPGLLKIFDEILVN 106
Query: 95 ACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
A DNK RD MN +++ +++ET ISVWNNG G+PV H E ++VPT++
Sbjct: 107 AADNKARDSSMNRLEVWLDRETARISVWNNGSGLPVEIHPTEGIYVPTLV---------- 156
Query: 155 NDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEY 214
FG+L TSSNY+D E K GGRNGYGAKLCNIFS +F+VET +
Sbjct: 157 ---------------FGNLFTSSNYDDSEIKTVGGRNGYGAKLCNIFSKEFIVETVDTRI 201
Query: 215 KKSFKQVWKDNMSKVTSPE---IKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRA 271
K+ F+Q W DNM K E I + D+TK+ F PDL +F++ L D++DLI RR
Sbjct: 202 KRRFRQKWYDNMKKCNEAEVVEILDETVKDYTKVEFVPDLERFQIDKLSDDVIDLIGRRV 261
Query: 272 YDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAP 330
++ AA+ +DV V+LNG+K V F+DYVK++ D +++ + PRW V +A
Sbjct: 262 FEVAATLPRDVDVYLNGQKCDVDGFEDYVKMFNDSSS-------LLFLHPTPRWHVGVAK 314
Query: 331 SDRGFQQ--------VSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIML 382
+ F + VSFVN+I T KGG HVD V+D IV I +V K D
Sbjct: 315 RNNFFGESHVVLPKIVSFVNNINTEKGGSHVDYVMDKIVNIIKPIVDSKLGD-------- 366
Query: 383 FGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKEN 442
++KP +KN++ IFINCLI NP+F+SQTKE
Sbjct: 367 --------------------------PTKSVKPAVIKNNLSIFINCLIENPSFESQTKET 400
Query: 443 MTLQKGSFGST--C------------------------------------------VPKL 458
+T + +FGS C + KL
Sbjct: 401 LTTKAKNFGSIFECDAKKTAEWAEQSGLIEDIVEEVLNMKKKKLPGKRVSVSSVRDIVKL 460
Query: 459 EDANDAGTKNSID-CTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQ 517
EDA AG + + CTLILTEGDSAK+LA++GL V+GR+ YGVFPL+GKLLNV +
Sbjct: 461 EDAEWAGITGTAEKCTLILTEGDSAKALALAGLEVLGRETYGVFPLKGKLLNVSNLDDAR 520
Query: 518 ILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHN 577
+N EI+NL++ILGL++ + + +LRYGRL+I+ DQD+DGSHIKGLI+NFIH
Sbjct: 521 ASKNEEISNLLRILGLKFEDSNSITRE--SLRYGRLLILADQDEDGSHIKGLIVNFIHKF 578
Query: 578 WPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWK--EETTNWHTYKIKYYK 631
WP+L+ F++ F TP++KA K + SF+S+ E+ +W EE W KIKYYK
Sbjct: 579 WPSLVHTDGFIQSFRTPLLKAKKGDKVRSFFSMNEYRKWADVEEGGKW---KIKYYK 632
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 76/118 (64%), Gaps = 12/118 (10%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRG---EDPLPMKPWY 716
+EP W PI+P++L+NG EGIGTGW TKI N NP +I+D I+R I E +P P+Y
Sbjct: 844 VEPTWLCPIVPLILINGTEGIGTGWSTKIANRNPIDIIDMIRRKIDSISTEYEIP--PFY 901
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDK-------LEITELQVGKWTTDYKDTLDTLL 767
+ F+G+++ ++F+ +G+I ++ ++ +EI EL +G WT+ YK+ L ++
Sbjct: 902 EEFRGKLEVVTPTKFISSGKIQLIRPERKNASTFSIEIVELPIGIWTSKYKEKLSKIV 959
>sp|Q5UQE6|TOP2_MIMIV DNA topoisomerase 2 OS=Acanthamoeba polyphaga mimivirus GN=TOP2
PE=3 SV=1
Length = 1263
Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust.
Identities = 265/668 (39%), Positives = 369/668 (55%), Gaps = 125/668 (18%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERR--- 76
S K+ N S+E+ YQKK+ EHIL PDTYIGS+E T MW+ N + +
Sbjct: 2 SKTSKSNKNPKSIEEKYQKKNLHEHILHSPDTYIGSIEEKTCNMWIFNESAGEDDAKIIF 61
Query: 77 -EITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKD 135
EITYVPGLYKI+DE++VNA D+ +R N IK+ ++Q+T ISVWNNG GI V HK+
Sbjct: 62 KEITYVPGLYKIYDEVIVNAADHNKRCQTCNIIKVDIDQKTGQISVWNNGDGIDVAIHKE 121
Query: 136 EKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGA 195
++VP+MI FG LLTS+NY+ E+K GG+NG+GA
Sbjct: 122 HNIWVPSMI-------------------------FGELLTSTNYDKNEEKTVGGKNGFGA 156
Query: 196 KLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFK 255
KL NI+S +F +ET + K F Q + +NM P+I S K +TKITF PD KF
Sbjct: 157 KLANIYSVEFTIETVDANKGKKFFQRFTNNMYDKEEPKISSFKKSSYTKITFIPDFKKFG 216
Query: 256 MTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKI 315
+ LD D + L +R +D A +T + KV+ N +++ NF+ YV LY +G K+
Sbjct: 217 LKCLDDDTLALFKKRVFDLAMTT-NAKVYFNDKQIVQNNFKKYVGLYF----PEGSQHKV 271
Query: 316 IYENV-NPRWEVAIA--PSDR-GFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK 371
+ ++ + RW+V + P+D+ Q +SFVNSI T++GG HV+ VV IV + + KK
Sbjct: 272 VIDDTTHERWKVGVIYDPTDQLEHQNISFVNSICTSRGGTHVEQVVGQIVNGLKTAIVKK 331
Query: 372 NKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIV 431
K++ +KP +K ++ F++ IV
Sbjct: 332 AKNV------------------------------------QIKPAMIKENLIFFVDATIV 355
Query: 432 NPTFDSQTKENMTLQKGSFGS----------------TC--------------------- 454
NP FD+QTKE +T + +FGS C
Sbjct: 356 NPDFDTQTKEYLTKKAANFGSKFEVTEKFIKGVIKTGVCDQIIANAKAREEANLSKTDGK 415
Query: 455 ------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLL 508
KL +A+ AGTK CTLILTEGDSAK+ A+SGL V+GRD YGVFPLRGKLL
Sbjct: 416 GRGPVRYEKLYNAHKAGTKEGYKCTLILTEGDSAKTFAMSGLNVIGRDYYGVFPLRGKLL 475
Query: 509 NVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKG 568
NVR+A+ K+I +N EI + KI+GL+ K Y +D+K LRYG +MI+ DQD DG HIKG
Sbjct: 476 NVRDASPKKIADNEEITAIKKIVGLEQGKVY---DDLKGLRYGSIMILADQDVDGYHIKG 532
Query: 569 LIINFIHHNWPTLLRLP-FLEEFITPII----KATKAREELSFYSLPEFEEWKEETTNWH 623
LI+NFIH WP+L++ F++ F TP++ K ++ ++F S FEEWK+E +
Sbjct: 533 LIMNFIHCFWPSLVKYEGFIQSFATPLLKATKGKGKTKQVVAFTSPQSFEEWKKENNDGK 592
Query: 624 TYKIKYYK 631
+ IKYYK
Sbjct: 593 GWSIKYYK 600
Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 76/109 (69%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEP +Y PIIPM+LVNGAEGIGTG+ TKI NPR+I+ NIKR++ E+P MKPW+++
Sbjct: 858 RIEPVYYAPIIPMILVNGAEGIGTGYSTKIYPCNPRDIIANIKRLLTNENPKTMKPWFRH 917
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLL 767
G I+ ++++ + I+ D + IT+L VG WT +YK LD L+
Sbjct: 918 LTGTIEKIDGAKYISRAKYEIIGKDTIHITDLPVGIWTDNYKAFLDNLI 966
>sp|P41001|TOP2_PLAFK DNA topoisomerase 2 OS=Plasmodium falciparum (isolate K1 /
Thailand) GN=TOP2 PE=3 SV=1
Length = 1398
Score = 310 bits (795), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 168/373 (45%), Positives = 219/373 (58%), Gaps = 89/373 (23%)
Query: 309 DGDPVKIIYENVNPRWEVAIAPSDRG-FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEV 367
D D + I+E RWE+ ++ SD FQQVSFVNSI TTKGG HV+ +V+ ++ + +
Sbjct: 317 DEDEIVKIHEK-QHRWEIVVSKSDGSQFQQVSFVNSICTTKGGSHVNYIVEQLLSSLSKK 375
Query: 368 VKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFIN 427
KNK GGM +K ++NH+W+F+N
Sbjct: 376 ANAKNK-----------------------------------GGMEIKSGHIRNHLWVFVN 400
Query: 428 CLIVNPTFDSQTKENMTLQKGSFGSTCV-------------------------------- 455
CLIVNPTFDSQTKE +T + FGS C+
Sbjct: 401 CLIVNPTFDSQTKETLTTKPVKFGSKCILSDKTINNVLKSPILSNILLWAQAKAQVELKK 460
Query: 456 ----------------PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYG 499
PKLEDANDAG+K S +CTLILTEGDSAK+ ++GL +VGRDKYG
Sbjct: 461 KMKAGSSKARERIIGIPKLEDANDAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDKYG 520
Query: 500 VFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQ 559
VFPL+GKLLNVR+A+ KQ+++N EI N+ +I+GL + K +D+K LRYG LMIMTDQ
Sbjct: 521 VFPLKGKLLNVRDASFKQLMDNKEIQNIFRIMGLDITDK--NKDDIKGLRYGSLMIMTDQ 578
Query: 560 DQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEE 618
D DGSHIKGL+IN IH WP+LL+ FL EF+TPI+K K +E SF+++ E+E+WK E
Sbjct: 579 DYDGSHIKGLLINMIHKFWPSLLKHKGFLSEFVTPIVKVQKGSQEYSFFTIAEYEQWK-E 637
Query: 619 TTNWHTYKIKYYK 631
TN +KIKYYK
Sbjct: 638 NTNLLGWKIKYYK 650
Score = 285 bits (730), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 144/281 (51%), Positives = 187/281 (66%), Gaps = 31/281 (11%)
Query: 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYK 86
A ++E+ YQKKSQ+EHILLRPDTYIGSVE T+ +W+ N+E N M ++ ITYVPGLYK
Sbjct: 2 AKNKTIEERYQKKSQIEHILLRPDTYIGSVEMHTQLLWVWNKEKNRMVQKNITYVPGLYK 61
Query: 87 IFDEILVNACDNKQRDPK-----MNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVP 141
IFDEI+VNA D K R+ + M CIKI +N+E ISV+N+G+GIPV HK+ ++VP
Sbjct: 62 IFDEIIVNAADVKAREKEKSENPMTCIKIEINKENKRISVYNDGEGIPVDIHKEMNIYVP 121
Query: 142 TMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIF 201
MIF G LLTS NY+D ED++TGGRNG+GAKL NIF
Sbjct: 122 HMIF-------------------------GELLTSDNYDDAEDRITGGRNGFGAKLTNIF 156
Query: 202 SSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDK 261
S +F+V+ S KK FK W DNMSK + P IK+ + D+ K+TF PDL KF MT +D
Sbjct: 157 SKEFIVQCGDSSRKKEFKMTWSDNMSKFSEPHIKNYNGKDYVKVTFKPDLNKFGMTEMDD 216
Query: 262 DMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY 302
D+ L+ +R YD A T V+V+LNG++L VK+F+ YV LY
Sbjct: 217 DIESLLFKRVYDLAG-TCSVRVYLNGQRLAVKDFKSYVDLY 256
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 98/154 (63%), Gaps = 6/154 (3%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP++YIP+IP +LVNG EGIGTG+ + IPN+N ++I+DNIKR I E +PM PWYK+
Sbjct: 860 KIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIIDNIKRYINKEPLIPMVPWYKD 919
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDEVHPG 778
FKG I+ G + + G I +D+D LEITEL + KWT DYK+ L+ LL + +
Sbjct: 920 FKGRIESNGKTGYETIGIINKIDNDTLEITELPIKKWTQDYKEFLEELLTDEKHQLILDY 979
Query: 779 PGRKSHPRPIAPKSYKID----DDSEEEEIEEVF 808
SH + K+D +EEE +E+VF
Sbjct: 980 IDNSSHEDICF--TIKMDPAKLQKAEEEGLEKVF 1011
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
KDYDYLL M +SLT+E+ +LL + +K EL IL+ +W D++ + E
Sbjct: 1143 KDYDYLLSMPIFSLTLEKVEDLLTQLKEKERELEILRNITVETMWLKDIEKVEE 1196
>sp|P12531|TOP2_TRYBB DNA topoisomerase 2 OS=Trypanosoma brucei brucei GN=TOP2 PE=3 SV=1
Length = 1221
Score = 303 bits (776), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 213/624 (34%), Positives = 322/624 (51%), Gaps = 68/624 (10%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y+K + +EH+L RP+ YIGS++ M++ + + HM + GL KI DEIL+NA
Sbjct: 7 YKKLTPIEHVLTRPEMYIGSLDTTATPMFIYDEQKGHMVWETVKLNHGLLKIVDEILLNA 66
Query: 96 CDN-KQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
DN R +M I++T+ +T I++ N+G GIP+V ++ K+++P M+F
Sbjct: 67 SDNISNRSARMTYIRVTIT-DTGEITIENDGAGIPIVRSREHKLYIPEMVF--------- 116
Query: 155 NDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEY 214
GHLLTSSNY+D+ GR+GYGAKL NI S F V C
Sbjct: 117 ----------------GHLLTSSNYDDDNQNAVAGRHGYGAKLTNILSLSFSV--CCRTN 158
Query: 215 KKSFKQVWKDNMSKVTSPEIKS-GSKD-DFTKITFTPDLTKFKM--TSLDKDMVDLITRR 270
+ F W+D+M K T+P + + G+K+ + T++ F PD +F M + DM ++ +R
Sbjct: 159 GREFHMSWQDHMRKATAPRVSNVGTKEKNVTRVKFLPDYERFGMKEKKISNDMKRVLYKR 218
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDE-DGDPVKIIYENVNP--RWEVA 327
D +A ++++ LNG K+F+DY LY+ + + P +YE+ + + +
Sbjct: 219 IMDLSAMFPNIQITLNGSSFGFKSFKDYATLYSAMTPKGEKPPPPYVYESKSGCVAFIPS 278
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEV---VKKKNKDLGC------- 377
+ P R + VN + T GG H +A D + + V +KK+NK +
Sbjct: 279 VVPGVR--RMFGVVNGVVTYNGGTHCNAAQDILTGCLDGVERELKKENKVMDTNRVLRHF 336
Query: 378 TIIMLFGN---KFNNVKNNKLQMAKTLIDIGVR--LGGMALKPFQVKNHIWIFINCLIVN 432
TI++ KF++ +L T+ + + + + PF ++ H+ I
Sbjct: 337 TILVFLVQVQPKFDSQNKARLVSTPTMPRVPRQDVMKYLLRMPF-LEAHV-----STITG 390
Query: 433 PTFDSQTKENMTLQKGSFGS--TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGL 490
KE T ++ S + T + KL DA TLI+TEGDSAK+LA + L
Sbjct: 391 QLAQELNKEIGTGRRMSSKTLLTSITKLVDATSTRRDPKHTRTLIVTEGDSAKALAQNSL 450
Query: 491 GVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRY 550
+ GVFPLRGKLLNVR K++ E+ L LGL+ K YT D LRY
Sbjct: 451 SSDQKRYTGVFPLRGKLLNVRNKNLKRLRNCKELQELFCALGLELDKDYT---DADELRY 507
Query: 551 GRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL-RLP-FLEEFITPIIKA-TKAREELSFY 607
R++IMTDQD DGSHIKGL+IN WP+LL R P F+ F TPI+KA + + +SF+
Sbjct: 508 QRILIMTDQDADGSHIKGLVINAFESLWPSLLVRNPGFISIFSTPIVKARLRDKSVVSFF 567
Query: 608 SLPEFEEWKEETTNWHTYKIKYYK 631
S+ EF +W+ N Y KYYK
Sbjct: 568 SMKEFHKWQRSNAN-TPYTCKYYK 590
Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 7/122 (5%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLP----MKP 714
++EP Y+PI+P++L NG+ GIG G+ + IP + ++ ++ MI GE + P
Sbjct: 801 QVEPNHYVPILPLLLCNGSVGIGFGFSSNIPPFHRLDVSAAVRAMISGERAKSVVRRLVP 860
Query: 715 WYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
W F+GEI + F+ G ++ +TEL WT + + + + A KD
Sbjct: 861 WAVGFQGEIRRGPEGEFIAVGTYTYCKGGRVHVTEL---PWTCSVEAFREHISYLATKDI 917
Query: 775 VH 776
V+
Sbjct: 918 VN 919
>sp|P30190|TOP2_TRYCR DNA topoisomerase 2 OS=Trypanosoma cruzi GN=TOP2 PE=3 SV=1
Length = 1232
Score = 301 bits (770), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 212/632 (33%), Positives = 324/632 (51%), Gaps = 80/632 (12%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y+K + ++H+L+RP+ Y+GSV+ + +M++ + E M + GL KI DEIL+NA
Sbjct: 7 YKKLTPIDHVLIRPEMYVGSVDTSSSSMFVFDHEKGRMVWESLKVNHGLLKIVDEILLNA 66
Query: 96 CDN-KQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
DN + +M I++ + E I++ N+G GIP+V K+ K+++P M+F
Sbjct: 67 SDNIANKGGRMTYIRVHIT-EAGEITIENDGAGIPIVRSKEHKLYIPEMVF--------- 116
Query: 155 NDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEY 214
GHLLTSSNY+D GR+GYGAKL NI S +F V C
Sbjct: 117 ----------------GHLLTSSNYDDTSQNAVAGRHGYGAKLTNILSHRFSV--CCRTK 158
Query: 215 KKSFKQVWKDNMSKVTSPEIKSGS--KDDFTKITFTPDLTKFKMTS--LDKDMVDLITRR 270
K F W D+M + T+P + + + + T++ F PD +F + + + DM ++ +R
Sbjct: 159 GKEFHMSWHDHMRRATAPRVSNVDPKEKNLTRVKFLPDYERFGLDANKISHDMKRVLHKR 218
Query: 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD-RQDEDGDPVKIIYENVNPRWEVAIA 329
D AA +++ LNG K+F DY LY+ + P +YE+ N +A
Sbjct: 219 IMDLAAMFPSIEISLNGVPFAFKSFADYAMLYSSPSSSGEMPPAPFVYESRNG--AIAFI 276
Query: 330 PS-DRGFQQV-SFVNSIATTKGGRHVDA---VVDAIVKQIIEVVKKKNKDLGCT------ 378
PS G +++ VN + T GG H +A V+ + ++ + + +KK NK +
Sbjct: 277 PSLTAGTRRIFGVVNGVVTHNGGTHCNAAQEVLQSSLESVEKALKKDNKVIDTNRVLRHF 336
Query: 379 IIMLF----GNKFNNVKNNKLQMAKT--------LIDIGVRLGGMALKPFQVKNHIWIFI 426
+I++F KF++ +L T L+D +R+ PF ++ H+
Sbjct: 337 MILVFLVQVQPKFDSQNKARLVSVPTMPRVPRQELMDFLLRM------PF-LEAHV---- 385
Query: 427 NCLIVNPTFDSQTKENMTLQKGSFGS--TCVPKLEDANDAGTKNSIDCTLILTEGDSAKS 484
+ D KE ++ S S + + KL DA TLI+TEGDSAK+
Sbjct: 386 -NTVTGQLADELNKEMGAGRRMSSKSLISSITKLVDATTTRRDPRFVRTLIVTEGDSAKA 444
Query: 485 LAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVED 544
LA + L + GVFPLRGKLLNVR K++ E+ L LGL+ K Y +D
Sbjct: 445 LAQNSLSSDQKRYTGVFPLRGKLLNVRNKNLKRLKNCKELQELFCALGLELGKIY---KD 501
Query: 545 MKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLL-RLP-FLEEFITPIIKA-TKAR 601
+ LRY RL++MTDQD DGSHIKGL+IN WP+LL R P F+ F TPI+K + +
Sbjct: 502 AEELRYQRLLVMTDQDADGSHIKGLVINAFEALWPSLLNRNPGFISIFSTPIVKVRLRDK 561
Query: 602 EELSFYSLPEFEEWKEETTNWHTYKIKYYKVV 633
SF+SL EF +W++ N +Y KYYK +
Sbjct: 562 STHSFFSLKEFHKWQKTHGNV-SYTAKYYKAL 592
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP----LPMKP 714
++EP Y+PI+P++L NG+ GIG G+ + IP +P ++ ++ MI GE + P
Sbjct: 801 QVEPNHYVPILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRSMINGEAAKVVVRRLVP 860
Query: 715 WYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE 774
W ++GE+ + F+ G D ++ +TE+ WT + D + A KD
Sbjct: 861 WAVGYQGEVRRGPEGEFIAAGSYQYYVDGRVHVTEI---PWTLSIEAFRDHISVLASKDV 917
Query: 775 V 775
V
Sbjct: 918 V 918
Score = 36.2 bits (82), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 30/131 (22%)
Query: 849 DKDYDYLLG--MTFWSLT----MERKNELLKKRDDKMTELNILKKKAPTDLWSDDLD--- 899
D YDY+L +TF++ T + RK +KR DK LKK AP +W D+LD
Sbjct: 1048 DDSYDYVLRKPITFYTKTSLENLNRKISETEKRIDK------LKKTAPVQMWLDELDRFD 1101
Query: 900 -------------ALREKDKIHPCPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSG 946
L+E+ +++P P G+ +R L R + + PM V
Sbjct: 1102 RAFEEHENTAVATILKER-RVNP-PTGDVSRNLQQPRLELEEVKVSSSGGKSVPMRVRVR 1159
Query: 947 EDAPPPTKASP 957
+ PPP P
Sbjct: 1160 KYVPPPPSKRP 1170
>sp|P27570|TOP2_CRIFA DNA topoisomerase 2 OS=Crithidia fasciculata GN=TOP2 PE=3 SV=1
Length = 1239
Score = 283 bits (723), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 204/638 (31%), Positives = 314/638 (49%), Gaps = 92/638 (14%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
YQK + ++H+LLRP+ Y+GS+E + M++ + M + GL KI DEIL+NA
Sbjct: 7 YQKLTPIDHVLLRPEMYVGSIETQSIPMFVFDPAKGKMVWESMQVNQGLLKIVDEILLNA 66
Query: 96 CDN---KQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSS 152
DN R +M I I ++ ++ I V N+G G+P+V+ K+ KM++P M+F
Sbjct: 67 ADNINNSVRGARMTYISIKIS-DSGEIMVENDGAGLPIVKSKEHKMYIPEMVF------- 118
Query: 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCS 212
GHLLTSSNYN++ T GR+GYGAKL NI S+KF V C
Sbjct: 119 ------------------GHLLTSSNYNNDASSTTAGRHGYGAKLTNILSTKFSV--VCR 158
Query: 213 EYKKSFKQVWKDNMSKVTSPEIKS--GSKDDFTKITFTPDLTKFKM--TSLDKDMVDLIT 268
+ F W D+M T+P + + + + T++TF PD F ++ DM ++
Sbjct: 159 TAGREFHMSWTDHMRMATTPRVSNVDPKEKNVTRVTFMPDYAHFGFPTAAISLDMKRVLH 218
Query: 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAI 328
+R D AA ++V LN + F DY +LY+ DG + + P +A
Sbjct: 219 KRIMDLAAMFSKIEVRLNNVPFGFQTFNDYARLYS-LPGADGAMPPEPFVHTGPNGSIAF 277
Query: 329 AP--SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTI------- 379
P + + V VN + T GG H + ++ + + + + KD G I
Sbjct: 278 VPQLTQSPKRIVGVVNGVVTYNGGTHCTSAMEILETGLDSLSRSLKKD-GKVIDTNRVAR 336
Query: 380 ---IMLF----GNKFNNVKNNKL-------QMAKTLIDIGVRLGGMALKPFQVKNHIWIF 425
+++F KF++ +L ++ +T +D +A PF ++ H+
Sbjct: 337 HFTVLVFLIQSQPKFDSQSKARLVSTVTMPRVPRTALD-----QYLAAMPF-LEAHM--- 387
Query: 426 INCLIVNPTFDSQTKENMTLQKGS-------FGSTCVPKLEDANDAGTKNSIDCTLILTE 478
+ D Q + + G+ + + KL DA + + TLI+TE
Sbjct: 388 -------NSMDDQLAAELNKEIGTGKRLSSRSLISSITKLVDATSSRSDGKNIRTLIVTE 440
Query: 479 GDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKK 538
GDSAK+LA++ L + GVFPLRGKLLNVR K++ E+ +L LGL+ K
Sbjct: 441 GDSAKALALNSLSSEQKKFCGVFPLRGKLLNVRNKNLKRLKTCKELQDLFLALGLELGKT 500
Query: 539 YTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL--PFLEEFITPIIK 596
Y + + LRY RL++MTDQD DGSHIKGL+IN WP+LL+ ++ F TPI+K
Sbjct: 501 YKSPAE---LRYQRLLVMTDQDADGSHIKGLVINAFESLWPSLLQHNPGYISLFSTPIVK 557
Query: 597 AT---KAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
KA+E ++F+S +F W+ N Y KYYK
Sbjct: 558 IKVNGKAKEVVAFHSFRDFHRWQRANPNAR-YSAKYYK 594
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLP----MKPW 715
+EP Y+PI+P++L NGA GIG G+ T IP+ +P ++ ++ MI GE + PW
Sbjct: 806 VEPNHYVPILPLLLCNGAVGIGFGFATNIPSFHPLDVSAAVRAMINGESAKQVVRNLVPW 865
Query: 716 YKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTT 757
F+G + + ++ G+ + +L ++EL W T
Sbjct: 866 AVGFQGTVRRGPEKEYIAVGKYTAHRNGRLHVSEL---PWMT 904
>sp|Q196X4|TOP2_IIV3 DNA topoisomerase 2 OS=Invertebrate iridescent virus 3 GN=IIV3-086L
PE=3 SV=1
Length = 1113
Score = 280 bits (715), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 207/622 (33%), Positives = 307/622 (49%), Gaps = 51/622 (8%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
Y K+ ++H+L D YIG P + W+ + N + R T L +IF E+L NA
Sbjct: 9 YTIKNDIQHVLDCSDVYIGDTAPTARSEWMFDDAVNQIVWRPTTTPEALVRIFVEVLTNA 68
Query: 96 CDNKQRDPKMN---C--IKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT--MIFGHL 148
DN +R C IK+ V+ +T SVWN+G+ IPVV++ D + P
Sbjct: 69 VDNIERSINGGHELCKNIKVDVDLKTGKTSVWNDGQVIPVVKNCDNGVVQPPPPTTEQDR 128
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
L N E + T+IFGH TSSNY++E D+V+G +NG G K NIFSS F V
Sbjct: 129 LAYEKLNRE------YIHTIIFGHFRTSSNYDNETDQVSG-KNGVGVKCTNIFSSWFSVV 181
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLI 267
+ K F Q W+ NM+K +P++ K K +T + + PD +FK+ S +D+ +
Sbjct: 182 GVDPDRKLKFSQEWRSNMTKSGAPQVVKCALKTGYTLVEYVPDFARFKLKSYPEDVESIF 241
Query: 268 TRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVA 327
+ DA+A + F NGE+ VKN Y KLY + + D V I Y++ +V
Sbjct: 242 KKLVVDASAFFPNTAFFFNGERTVVKNAVAYAKLYYNLNETAVDSVVIDYKDS----KVV 297
Query: 328 IAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVK-KKNKDLG----CTIIML 382
+ S VSFVN T GG+HV I ++ + KKN L L
Sbjct: 298 VVGSATPLPPVSFVNGQITPAGGQHVTNWSRVIFGALLAALNGKKNVSLTKADIAPYFQL 357
Query: 383 FGN------KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFD 436
F + KF+ N L+ K + + LK W I+ +
Sbjct: 358 FIHSKVSKPKFDGQNKNCLKSPKVEAHLDATILKKMLK--------WKIISTIQDKVV-- 407
Query: 437 SQTKENMTLQKGSFGSTCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGL--GVV- 493
++KE + L+K T + K+ D D + D LI+ EG SAKS AV+G+ G+
Sbjct: 408 -KSKEYLALKKIECRRTPIVKV-DGYDQANRLGPDSVLIVCEGLSAKSYAVAGIQKGLFN 465
Query: 494 --GRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYG 551
GR +G+ PLRGK LNV+ T +I +N +++ +K+L L+++ Y + TL YG
Sbjct: 466 KKGRTYFGILPLRGKFLNVKNTTPLKIGQNKVVSDFIKVLNLKFNLDYRKATNYATLNYG 525
Query: 552 RLMIMTDQDQDGSHIKGLIINFIHHNWPTLL-RLPFLEEFITPIIKATKAREELS-FYSL 609
L+I+TD D+DG HIKGLI+N IH +PTL R F+ TPI+K + + + FY
Sbjct: 526 TLLILTDADKDGIHIKGLILNLIHELFPTLFHRQGFIYSMETPIVKILHKKGQPTLFYDE 585
Query: 610 PEFEEWKEETTNWHTYKIKYYK 631
FE+W+ + + KYYK
Sbjct: 586 NSFEDWRAQHPELKHF--KYYK 605
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Query: 661 EPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP---LPMKPWYK 717
EP ++PIIP+VLVNG+ GIGTGW +P +NP E++ I+ + +D LP KPWY+
Sbjct: 817 EPVHFVPIIPLVLVNGSVGIGTGWSCFVPQYNPLELIRYIEARLTSQDSEALLPAKPWYR 876
Query: 718 NFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAE 771
NF G++ G +F G + +D D + +TEL VG WT +KD +L+ +
Sbjct: 877 NFTGKVAATGPGKFTTFGRMKQVDADTVRVTELPVGMWTDRFKDQCYSLIESGQ 930
>sp|O61078|TOP2_LEICH DNA topoisomerase 2 OS=Leishmania chagasi GN=TOP2 PE=3 SV=2
Length = 1236
Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 206/640 (32%), Positives = 307/640 (47%), Gaps = 84/640 (13%)
Query: 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFD 89
M+ Y+K + ++H+LLRP+ Y+GS+E M++ + E M + GL KI D
Sbjct: 1 MTYASKYKKLTPIDHVLLRPEMYVGSIETQPTPMYIFDPEKGRMVWETMRVNQGLLKIVD 60
Query: 90 EILVNACDN---KQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFG 146
EIL+NA DN + + I I ++ +T I+V N+G G+P+V ++ KM++P M+F
Sbjct: 61 EILLNAADNINNSKGSVRQTYISIHIS-DTGEITVENDGAGLPIVRSREHKMYIPEMVF- 118
Query: 147 HLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFV 206
GHLLTSSNYN++ T GR+GYGAKL NI S+KF
Sbjct: 119 ------------------------GHLLTSSNYNNDSTSTTAGRHGYGAKLTNILSTKFS 154
Query: 207 VETSCSEYKKSFKQVWKDNMSKVTSPEIK--SGSKDDFTKITFTPDLTKFKM--TSLDKD 262
V C + W D+M T+P + + T++ F PD F S+ D
Sbjct: 155 V--VCRTDGRESHMSWTDHMRMATAPRVNRVDPKEKSVTRVKFMPDYAHFGFPNASISLD 212
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVN 321
M ++ +R D AA ++V LN + F DY +LY+ D P +Y +
Sbjct: 213 MKRVLHKRIMDLAAMFSKIEVRLNNVPFGFRTFTDYARLYSLPGLDGSMPPEPFVY--TS 270
Query: 322 PRWEVAIAP--SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTI 379
P VA P + + V VN + T GG H +A +D I+ ++ + K K G
Sbjct: 271 PNGSVAYVPQLTQSPKRIVGVVNGVVTYNGGTHCNAAMD-ILDSCLDSLSKNFKKNGKV- 328
Query: 380 IMLFGNKFNNVKNNKLQMAKTLIDIGV------------RLGGMALKPFQVKNHIWIFIN 427
V N++Q T++ + RL P KN + ++
Sbjct: 329 ----------VDTNRVQRHFTVLVFLIQTQPKFDSQSKARLVSTVTMPRMPKNTLEKYLE 378
Query: 428 CL-----IVNPTFDSQTKE-NMTLQKGSFGS-----TCVPKLEDANDAGTKNSIDCTLIL 476
+ VN D E N + G S + + KL DA + TLI+
Sbjct: 379 RMPFLEAHVNSMDDQLANELNKEIGAGRRLSSKTLISAITKLVDATSSQPDGRNIRTLII 438
Query: 477 TEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYS 536
TEGDSAK+LA++ L + GVFPLRGKLLNVR K++ + +L LGL+
Sbjct: 439 TEGDSAKALALNSLSSEQKKYCGVFPLRGKLLNVRNKNLKRLKTCKGLQDLFLSLGLELG 498
Query: 537 KKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR--LPFLEEFITPI 594
K+Y + + LRY RL++MTDQD DGSHIKGL+IN WP LL+ ++ F TPI
Sbjct: 499 KEYRSPAE---LRYQRLLVMTDQDADGSHIKGLVINAFESLWPKLLQNNPGYISLFSTPI 555
Query: 595 IK---ATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+K + K++E ++F+S +F W+ + Y KYYK
Sbjct: 556 VKIKVSGKSKEVIAFHSFRDFHRWQRAHPSAR-YTAKYYK 594
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLP----MKPW 715
+EP Y+PI+PM+L NGA GIG G+ T IP+ +P ++ ++ MI GE + PW
Sbjct: 806 VEPHHYVPILPMLLCNGAVGIGFGFATTIPSFHPLDVSAAVRAMINGESAKQVVRNLVPW 865
Query: 716 YKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTT 757
F+G + D+ F+ G+ + + I+E+ W T
Sbjct: 866 AVGFQGTVRRGPDNEFIAVGKYTAHPNGRFHISEI---PWMT 904
>sp|Q9QSK1|TOP2_IIV6 DNA topoisomerase 2 OS=Invertebrate iridescent virus 6 GN=TOP2 PE=3
SV=1
Length = 1132
Score = 254 bits (648), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 194/674 (28%), Positives = 314/674 (46%), Gaps = 132/674 (19%)
Query: 33 EKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEIL 92
+K Y S ++H+LLRP+ IGS P+ +T ++++ + + +++ L +IF E+L
Sbjct: 7 KKQYTTLSDIDHVLLRPEVIIGSTVPMEQTEYVVDENFSEILEKQVFVSEALIRIFVEVL 66
Query: 93 VNACDNKQRDPKMNC----IKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
NA DN R + IKI + + T+ + N+G+ I + + +++ + +
Sbjct: 67 ANAVDNIHRSKGSSTPCKSIKIKIEDDGTTM-IHNDGQVIKISKEENDGIEINGK----- 120
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVE 208
S YN E ++FGHL +SSNY+D + T G+NG G K NI S F V
Sbjct: 121 -KCSVYNHE----------LVFGHLRSSSNYDDTVVRQTSGKNGLGVKCTNILSKSFKVI 169
Query: 209 TSCSEYKKSFKQVWKDNMSKVTSPEIK-SGSKDDFTKITFTPDLTKFKMTSLDKDMVDLI 267
E KK F Q W +NM + + P++ S SK +T++ + PD + + + D++ +
Sbjct: 170 GVDPENKKKFVQEWTNNMKETSGPKVTTSSSKTGYTEVIYCPDFER--LGNFSSDIIGIF 227
Query: 268 TRRAYDAA--ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWE 325
+ D A AS++ V V+ N +KLP+K F DY KL+ ++ + I E+ +
Sbjct: 228 RKHVLDVAMLASSEGVSVYFNDKKLPIKKFSDYTKLFKLEKES----ISITEEDGSSEVT 283
Query: 326 VAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGN 385
+A D + +SFVN + T +H VD K
Sbjct: 284 IAFVERDGKKKPISFVNGLFT----KHGGQHVDGWTKPF--------------------- 318
Query: 386 KFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT- 444
F N+ + + +KT D+ + L V + F+ + P FD Q K +
Sbjct: 319 -FANLLSVLNKPSKTYKDLKLSLK-------DVTPYFRFFVKSTVDKPQFDCQNKNMLKS 370
Query: 445 -----------------------LQKGSF-------GSTCVPKLED-------------- 460
L++ SF + + L D
Sbjct: 371 PCLKYTIPDKIITKVCKWTSVQELKQSSFEKLLKGKDNNIIKTLNDKKRRPKVSVKEYDP 430
Query: 461 ANDAGTKNSIDCTLILTEGDSAKSLAVSGLGV----------VGRDKYGVFPLRGKLLNV 510
AN AGT S CTLI+ EG SAK+ AV+G+ GRD +G+ PLRGK LNV
Sbjct: 431 ANKAGTTLSEKCTLIVCEGLSAKTYAVAGISTGISFTGTDTKKGRDWFGILPLRGKFLNV 490
Query: 511 REATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLI 570
R A + ++++N + +LV +GL + Y+T + K+L YG ++I+ D D+DG HI+GL+
Sbjct: 491 RNANNDKMIKNTVVTDLVNAMGLTFGMDYSTQKSRKSLNYGSIIIIPDPDEDGIHIEGLV 550
Query: 571 INFIHHNW--------PTLLRLPFLEEFITPIIKAT----KAREELSFYSLPEFEEWKEE 618
+NF HH++ P L PF+ PIIK K R E+ F++ F ++K E
Sbjct: 551 LNFFHHHFSSLFNPVVPNLKDFPFISSMKIPIIKVIEKPLKGRREIEFFTHEAFHKFKNE 610
Query: 619 TTNWH-TYKIKYYK 631
WH ++IKY+K
Sbjct: 611 -NKWHKNHEIKYFK 623
Score = 81.3 bits (199), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 65/113 (57%), Gaps = 9/113 (7%)
Query: 661 EPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMI----RGED-PLPMKPW 715
EP +Y P+IP++ +NG+ G+GTG+ IP NP EI+D +K+ I +GE KPW
Sbjct: 831 EPVFYAPVIPLICINGSVGVGTGFSCNIPMFNPSEIIDGLKQWINMREQGEKYVFKYKPW 890
Query: 716 YKNFKGEIDYCGDSRFVVNGEIAILDDD----KLEITELQVGKWTTDYKDTLD 764
YK F G+I+ G R++ G ++ + + ++EL + WT +K+ D
Sbjct: 891 YKGFTGKIEKNGSGRYISYGTLSNEASNNGMYQYTVSELPINMWTDKFKEMCD 943
>sp|Q4KWZ7|REV1_CHICK DNA repair protein REV1 OS=Gallus gallus GN=REV1 PE=2 SV=1
Length = 1255
Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 139/333 (41%), Positives = 197/333 (59%), Gaps = 47/333 (14%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E+ V + +S + + AVSCDE VD +++L E LTP + A+ +R+ I
Sbjct: 556 AYKEVAQTVYEIL----ASYTHNIEAVSCDEALVDITEILTETRLTPDELANAIRDEIKA 611
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T CT S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVG S+ KL
Sbjct: 612 QTKCTASVGMGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGRSMESKL 671
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ S+ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 672 ASLGIRTCGDLQCASMSKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 731
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR A AP E +K+ GHG+CD I
Sbjct: 732 RFTQPKEAEAFLLSLSEEIQRRLEAAGMKGKRLTLKIMVRKAGAPVEPAKYGGHGICDNI 791
Query: 2116 TKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQIL 2175
++ +L D+ T S+ + I
Sbjct: 792 ARTVTL----------------------------------DHATDSAKV---------IG 808
Query: 2176 KEVLFIVNKLKVDPVELRGIGIQVSKLEHQSKT 2208
KE L + + +K++ ++RG+GIQV +L SKT
Sbjct: 809 KETLNMFHTMKLNISDMRGVGIQVQQLVPISKT 841
Score = 157 bits (397), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 135/272 (49%), Gaps = 54/272 (19%)
Query: 1501 SEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMG 1560
S P +K T SK ++++S P S+ F+ +FY++SRLHH+ST
Sbjct: 321 STVQGPSSTKSTSVPTPSKAASLSVSKP----------SDCSFISDFYSRSRLHHISTWK 370
Query: 1561 SMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHID 1620
++VN L+ K+ GVF G E ++KWK + + + + S ++P+ IMH+D
Sbjct: 371 CELTEFVNSLQRKNSGVFPGREKLKKWKAGRSALKTDTGNVSVA---SSAKPQSCIMHVD 427
Query: 1621 MDCFFVSVGIRHHPELQDEPVAVAHGKG-NSSKVREGVDRQAEFDIYRQRTMN------- 1672
MDCFFVSV IR+ P+L+ +PVAV +G + +R G + Q E+ Y+ + +N
Sbjct: 428 MDCFFVSVAIRNRPDLKGKPVAVTSNRGAGKAPLRPGANPQLEWQYYQNKLLNGKAEIRI 487
Query: 1673 ---------------------------------RMGLNTREYGLGNGMFVGHALKKCPNL 1699
R+ G+ NGMF G A K CPNL
Sbjct: 488 PDKLDSLVWEHSDSAHMNGVDCDLTVLSMAEIASCSYEARQAGIKNGMFFGQAKKLCPNL 547
Query: 1700 KIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
+ V YDF YKEV+ +Y ++AS T NIEAVS
Sbjct: 548 QAVSYDFNAYKEVAQTVYEILASYTHNIEAVS 579
Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/130 (53%), Positives = 89/130 (68%), Gaps = 24/130 (18%)
Query: 1321 YMEAKKRKLEEQF--------ELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
YM AK +KLE+QF + + NS S IF GVAI+VNG+T PSA
Sbjct: 22 YMSAKVKKLEDQFRSDSAIQHQRDGNSSS---IFSGVAIYVNGFTD-----------PSA 67
Query: 1373 EELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKL 1431
+EL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+++PEWIV+SI AG+L
Sbjct: 68 DELRRLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVVRPEWIVESIKAGRL 126
Query: 1432 LDHKKYLLYT 1441
L H Y LYT
Sbjct: 127 LSHIPYQLYT 136
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+L+EW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1163 LAGAVEFNDVKTLLKEWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVVKYMKRLMQ 1222
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKIV 1899
+VW A+ +L VQ ++ S K++
Sbjct: 1223 SSVESVWNMAFDFILDNVQVVLQQTYGSTLKVI 1255
Score = 38.1 bits (87), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 1180 SAPKPQAS---STKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
S P P + S S+ F+ +FY++SRLHH+ST ++VN L
Sbjct: 333 SVPTPSKAASLSVSKPSDCSFISDFYSRSRLHHISTWKCELTEFVNSL 380
>sp|Q5R4N7|REV1_PONAB DNA repair protein REV1 OS=Pongo abelii GN=REV1 PE=2 SV=1
Length = 1250
Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/246 (49%), Positives = 168/246 (68%), Gaps = 4/246 (1%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E+ + + +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 544 AYKEVARTLYETL----ASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEIKD 599
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T CT S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVGHS+ KL
Sbjct: 600 QTKCTASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGHSMESKL 659
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 660 ASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 719
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR AP E +KF GHG+CD I
Sbjct: 720 RFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKPGAPVETAKFGGHGICDNI 779
Query: 2116 TKSSSL 2121
++ +L
Sbjct: 780 ARTVTL 785
Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 124/229 (54%), Gaps = 41/229 (17%)
Query: 1539 SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT---SLGITE 1595
S+ +F+ FY+ SRLHH+S ++VN L+ + +G+F G E ++K KT +L +T+
Sbjct: 344 SDCNFISNFYSHSRLHHISMWKCELTEFVNTLQRQSNGIFPGREKLKKMKTGRSALVVTD 403
Query: 1596 DEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS-SKVR 1654
D+ + ++P + IMH+DMDCFFVSVGIR+ P+L+ +PVAV +G + +R
Sbjct: 404 TGDM--SLLNSP---RHQSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLR 458
Query: 1655 EGVDRQAEFDIYRQRTMN--------------------------------RMGLNTREYG 1682
G + Q E+ Y+ + + R+ G
Sbjct: 459 PGANPQLEWQYYQNKILKGKADIPDSSLWENPDSAQADGSDSVLSRAEIASCSYEARQLG 518
Query: 1683 LGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
+ NGMF GHA + CPNL+ VPYDF YKEV+ LY +AS T NIEAVS
Sbjct: 519 IKNGMFFGHAKQLCPNLQAVPYDFHAYKEVARTLYETLASYTHNIEAVS 567
Score = 137 bits (346), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 74/127 (58%), Positives = 89/127 (70%), Gaps = 16/127 (12%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSAEEL 1375
GGYM AK +KLEEQF +A G IF GVAI+VNGYT PSAEEL
Sbjct: 19 GGYMAAKVQKLEEQFRSDAAMQKDGTSSTIFSGVAIYVNGYTD-----------PSAEEL 67
Query: 1376 KALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDH 1434
+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+LL +
Sbjct: 68 RKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRLLSY 126
Query: 1435 KKYLLYT 1441
Y LYT
Sbjct: 127 IPYQLYT 133
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+LREW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1158 LAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1217
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1218 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1249
>sp|Q920Q2|REV1_MOUSE DNA repair protein REV1 OS=Mus musculus GN=Rev1 PE=1 SV=1
Length = 1249
Score = 245 bits (626), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 142/364 (39%), Positives = 201/364 (55%), Gaps = 55/364 (15%)
Query: 1863 RHVGKKESTVWAEAYQ----------EMLSC--VQSAMKHKPSSESKIVSAVSCDEMYVD 1910
R VG K + A Q + +C V AM +S + + AVSCDE +D
Sbjct: 514 RQVGIKNGMFFGYAKQLCPNLQAVPYDFHACREVAQAMYETLASYTHSIEAVSCDEALID 573
Query: 1911 CSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQ 1970
+ +L E L+P +FA+ LR I +T C S G GSN L AR+ATKKAKP+GQ+HL P
Sbjct: 574 VTDILAETKLSPEEFAAALRIEIKDKTKCAASVGIGSNILLARMATKKAKPDGQYHLQPD 633
Query: 1971 IISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHC 2030
+ DF+ +++LPGVG S+ KL SLG +TCGDLQ +++ +LQ E G K G LY+ C
Sbjct: 634 EVDDFIRGQLVTNLPGVGRSMESKLASLGIKTCGDLQCLTMAKLQKEFGPKTGQMLYRFC 693
Query: 2031 RGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITL 2090
RG DD+ + E +RKSVSAE+NYGIRF +E E FL L+ E+++RLE MKGK +TL
Sbjct: 694 RGLDDRPVRTEKERKSVSAEINYGIRFTQPKEAEAFLLSLSEEIQRRLEAAGMKGKRLTL 753
Query: 2091 KLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFL 2150
K+MVR AP E +KF GHG+CD I ++ +L
Sbjct: 754 KIMVRKPGAPIETAKFGGHGICDNIARTVTL----------------------------- 784
Query: 2151 GHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSKLEHQSKTLA 2210
D T S+ + I K L + + +K++ ++RG+GIQV++L + L+
Sbjct: 785 -----DQATDSAKI---------IGKATLNMFHTMKLNISDMRGVGIQVNQLVPANSNLS 830
Query: 2211 TIDT 2214
T +
Sbjct: 831 TCSS 834
Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 134/257 (52%), Gaps = 42/257 (16%)
Query: 1512 TVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELR 1571
TV+ S T ++ K S S+ +F+ +FY++SRLHH+ST ++VN L+
Sbjct: 315 TVQGPSSTKSTSVLTLSKVAPSVPSKPSDCNFISDFYSRSRLHHISTWKCELTEFVNTLQ 374
Query: 1572 EKHDGVFRGIEAIRKWKT---SLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSV 1628
+ G+F G E ++K KT SL +T+ T S SP + +MH+DMDCFFVSV
Sbjct: 375 RQSSGIFPGREKLKKVKTGRSSLVVTD----TGTMSVLSSPRH-QSCVMHVDMDCFFVSV 429
Query: 1629 GIRHHPELQDEPVAVAHGKG-NSSKVREGVDRQAEFDIYRQRTMNRMGLN---------- 1677
GIR+ P+L+ +PVAV +G ++ +R G + Q E+ Y+ R + +
Sbjct: 430 GIRNRPDLKGKPVAVTSNRGTGTAPLRPGANPQLEWQYYQNRALRGKAADIPDSSVWENQ 489
Query: 1678 -----------------------TREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSY 1714
R+ G+ NGMF G+A + CPNL+ VPYDF +EV+
Sbjct: 490 DSTQTNGIDSVLSKAEIASCSYEARQVGIKNGMFFGYAKQLCPNLQAVPYDFHACREVAQ 549
Query: 1715 CLYNLIASLTLNIEAVS 1731
+Y +AS T +IEAVS
Sbjct: 550 AMYETLASYTHSIEAVS 566
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/134 (56%), Positives = 92/134 (68%), Gaps = 16/134 (11%)
Query: 1316 KKKGGYMEAKKRKLEEQFELEANSDSRG---GIFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
+K GGYM AK +KLEEQF +A + G IF GVAI+VNGYT PSA
Sbjct: 16 EKWGGYMAAKVQKLEEQFRTDAANQKDGTASAIFSGVAIYVNGYTD-----------PSA 64
Query: 1373 EELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKL 1431
EEL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+L
Sbjct: 65 EELRNLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRL 123
Query: 1432 LDHKKYLLYTGTDA 1445
L Y LYT A
Sbjct: 124 LSSAPYQLYTKPSA 137
Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+L+EW+ S P DI Y ++L+EE+ L + +++++++R +
Sbjct: 1157 LAGAVEFSDVKTLLKEWITTISDPMEEDILQVVRYCTDLIEEKDLEKLDLVIKYMKRLMQ 1216
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1217 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1248
Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 1193 SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
S+ +F+ +FY++SRLHH+ST ++VN L
Sbjct: 342 SDCNFISDFYSRSRLHHISTWKCELTEFVNTL 373
>sp|Q9UBZ9|REV1_HUMAN DNA repair protein REV1 OS=Homo sapiens GN=REV1 PE=1 SV=1
Length = 1251
Score = 244 bits (623), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 120/246 (48%), Positives = 167/246 (67%), Gaps = 4/246 (1%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E+ + + +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 545 AYKEVAQTLYETL----ASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEIKD 600
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVGHS+ KL
Sbjct: 601 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGHSMESKL 660
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 661 ASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 720
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR AP E +KF GHG+CD I
Sbjct: 721 RFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKPGAPVETAKFGGHGICDNI 780
Query: 2116 TKSSSL 2121
++ +L
Sbjct: 781 ARTVTL 786
Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 125/230 (54%), Gaps = 42/230 (18%)
Query: 1539 SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT---SLGITE 1595
S+ +F+ FY+ SRLHH+S ++VN L+ + +G+F G E ++K KT +L +T+
Sbjct: 344 SDCNFISNFYSHSRLHHISMWKCELTEFVNTLQRQSNGIFPGREKLKKMKTGRSALVVTD 403
Query: 1596 DEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS-SKVR 1654
D+ + ++P + IMH+DMDCFFVSVGIR+ P+L+ +PVAV +G + +R
Sbjct: 404 TGDM--SVLNSP---RHQSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLR 458
Query: 1655 EGVDRQAEFDIYRQRTMNRMGLN---------------------------------TREY 1681
G + Q E+ Y+ + + + R+
Sbjct: 459 PGANPQLEWQYYQNKILKGKAADIPDSSLWENPDSAQANGIDSVLSRAEIASCSYEARQL 518
Query: 1682 GLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
G+ NGMF GHA + CPNL+ VPYDF YKEV+ LY +AS T NIEAVS
Sbjct: 519 GIKNGMFFGHAKQLCPNLQAVPYDFHAYKEVAQTLYETLASYTHNIEAVS 568
Score = 137 bits (346), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 74/127 (58%), Positives = 89/127 (70%), Gaps = 16/127 (12%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSAEEL 1375
GGYM AK +KLEEQF +A G IF GVAI+VNGYT PSAEEL
Sbjct: 19 GGYMAAKVQKLEEQFRSDAAMQKDGTSSTIFSGVAIYVNGYTD-----------PSAEEL 67
Query: 1376 KALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDH 1434
+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+LL +
Sbjct: 68 RKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRLLSY 126
Query: 1435 KKYLLYT 1441
Y LYT
Sbjct: 127 IPYQLYT 133
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+LREW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1159 LAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1218
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1219 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1250
>sp|A3EWL3|REV1_ARATH DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 PE=2 SV=1
Length = 1105
Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 160/532 (30%), Positives = 237/532 (44%), Gaps = 118/532 (22%)
Query: 1319 GGYMEAKKRKLEEQFELEANSDSRGG------IFQGVAIFVNGYTKHCMMLDAYYIVPSA 1372
G YME K RKL+ QFE EA++ SRG IFQGV+IFV+G+T +PS
Sbjct: 55 GSYMEVKNRKLQNQFETEASAASRGVSGSEKLIFQGVSIFVDGFT-----------IPSH 103
Query: 1373 EELKALMMLHGGIYHHYESSRT-THIIASNLPHTKIKKLKP---GDKIIKPEWIVDSISA 1428
+ELK MM +GG + +Y S R+ THII SNLP +K+K L+ G ++KP WIVDSISA
Sbjct: 104 QELKGYMMKYGGRFENYFSRRSVTHIICSNLPDSKVKNLRTFSRGLPVVKPTWIVDSISA 163
Query: 1429 GKLLDHKKYLLYTGTD-------------------AKPLTKLLQKSYFENTEAPCCSKS- 1468
+LL Y L D A P+T + + E ++
Sbjct: 164 NRLLGWVPYQLDQLNDTQPKLSAFFAPRSHLTPQMASPVTSFQPDTGYSEAEEGSSIRAD 223
Query: 1469 -LVETSSHTSTVSDSV--DNTEESKSEAVNSEESKSEAANP-------IESKQTVKTKES 1518
E H D V +NT +E + + KS N IE K+ +S
Sbjct: 224 DSEEARDHIDDEIDGVYIENTTPELTEQTGTGDLKSSEMNAEGLGNYDIEEKEVSSELQS 283
Query: 1519 KLETVNIS----------------APKPQASSTKNASNED--FLGEFYNKSRLHHLSTMG 1560
+ S A +S+ ++++ ED F+ ++ SRLH + T
Sbjct: 284 TTNLHSTSDNKSVHANGKNGGKSIATAAGSSTRRHSTLEDPNFVENYFKNSRLHFIGT-- 341
Query: 1561 SMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHID 1620
+ N R++ G G+ KW S N + + I+HID
Sbjct: 342 -----WRNRYRKRFHGSSNGL----KWADS-------------GQNTAEMAKKSTIIHID 379
Query: 1621 MDCFFVSVGIRHHPELQDEPVAVAHG---KGNSSKVREGVDRQAEFDIYRQRTMNRMGLN 1677
+DCFFVSV I++ EL D+PVAV H KG + ++
Sbjct: 380 LDCFFVSVVIKNRLELHDKPVAVCHSDNPKGTAE-------------------ISSANYP 420
Query: 1678 TREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNES 1737
R YG+ GMFV HA CP L IVPY+FE Y+EV+ Y+++ ++A+S +E+
Sbjct: 421 ARAYGVKAGMFVRHAKDLCPQLVIVPYNFEAYEEVADQFYDILHRHCRKVQALS--CDEA 478
Query: 1738 FLNALP-EDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPS 1788
FL+ D+ EVL R + + + + + + ++ A T V P+
Sbjct: 479 FLDVSDLSDVETEVLASTIRNEILETTGCSASAGIGGTMLMARLATRVAKPA 530
Score = 168 bits (425), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 120/383 (31%), Positives = 181/383 (47%), Gaps = 70/383 (18%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
V A+SCDE ++D S L + AS +R I + TGC+ S G G L ARLAT+
Sbjct: 470 VQALSCDEAFLDVSDLSD---VETEVLASTIRNEILETTGCSASAGIGGTMLMARLATRV 526
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
AKP GQ +++ + + +F+ +P+ LPGVG L KL QTCG L+ IS LQ +
Sbjct: 527 AKPAGQLYISAEKVEEFLDQLPVGTLPGVGSVLKEKLVKQNIQTCGQLRLISKDSLQKDF 586
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQE----METFLKQLAGEV 2074
G K G L+ + RG D + +T + KS+ AEVN+G+RF++ Q+ ++ FL+ L EV
Sbjct: 587 GVKTGEMLWSYSRGLDLRSVTAVQESKSIGAEVNWGVRFRDQQDVFILVQHFLQCLCKEV 646
Query: 2075 EKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFL 2134
RL+ +M G+ TLK+ R +A E +K++G G CD +++S ++P +
Sbjct: 647 SLRLQGCEMIGRTFTLKIKKRKKDA-EEPTKYMGCGDCDNLSRSITVPAATDDI------ 699
Query: 2135 LLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRG 2194
E + SK L C +D E+RG
Sbjct: 700 ------EVLQRISKKLFGSFC-------------------------------LDVKEVRG 722
Query: 2195 IGIQVSKLEHQ------SKTLATI-------------DTFFTNKGKPPDQLNNPRPGPSN 2235
+G+QVSKL+ S+TL + D F K + N P G +
Sbjct: 723 VGLQVSKLDSADPSNKGSRTLKSWLSSAPAVVQIEQDDNVFAAKVRENSDCNRPVTGGVS 782
Query: 2236 STITPGPSNSTLPPGPSNSTLPP 2258
S++ G +NS+LPP
Sbjct: 783 RLRESNSEESSIQSGDTNSSLPP 805
>sp|P0C9C1|TOP2_ASFWA DNA topoisomerase 2 OS=African swine fever virus (isolate
Warthog/Namibia/Wart80/1980) GN=War-122 PE=3 SV=1
Length = 1192
Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 152/614 (24%), Positives = 265/614 (43%), Gaps = 110/614 (17%)
Query: 80 YVPGLYKIFDEILVNACDNKQ----RDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKD 135
+ P L KIFDEI+VNA D+++ + K+ IKI+ N+ S N+G GIP+ +H+
Sbjct: 50 HCPALLKIFDEIIVNATDHERACHSKTKKVTYIKISFNK--GVFSCENDGPGIPIAKHEQ 107
Query: 136 EKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGA 195
+ ++ VP + H L +N N +D + GG NG G
Sbjct: 108 ASLIAKRDVY-------------------VPEVASCHFLAGTNINKAKDCIKGGTNGVGL 148
Query: 196 KLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFK 255
KL + S++ + T+ +K + + + + P + S++ FT+I P +
Sbjct: 149 KLAMV-HSQWAILTTADGAQKYVQHI--NQRLDIIEPPTITPSREMFTRIELMPVYQELG 205
Query: 256 MT-----SLDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDED 309
+ D+ I RA AA K ++ N + + K+YT +
Sbjct: 206 YAEPLSETEQADLSAWIYLRACQCAAYVGKGTTIYYNEKPCRTGSVMALAKMYTLLSAPN 265
Query: 310 GD-PVKIIYENVNP------RWEVAIAPSDRGFQQVSFVNSIATTKGGRHV----DAVVD 358
G I + P + ++P + F+ VS +N + KG HV + +
Sbjct: 266 GTIHTATIKADAKPYSLHPLQVAAVVSPKFKKFEHVSIINGVNCVKG-EHVTFLKKTINE 324
Query: 359 AIVKQIIEVVKKKNKDL----GCTIIMLF------GNKFNNVKNNKLQMAKTLIDIGVRL 408
+VK+ + +K KN+ C+ I + G ++ + ++L +A+ +
Sbjct: 325 IVVKKFQQTIKDKNRKTTLRDSCSNIFIVIVGSIPGIEWTGQRKDELSIAENVF------ 378
Query: 409 GGMALKPFQVKNHIWI---FINCL---IVNPTFDSQTKENMTLQKGSFGSTCVPKLEDAN 462
K H I F+ + IV+ S +K K + V K A
Sbjct: 379 ----------KTHYSIPSSFLTSMTKSIVDILLQSISK------KDNHKQVDVDKYTRAR 422
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGR--------DKYGVFPLRGKLLNVREAT 514
+AG K + DC L+ EGDSA SL +GL +G+ D G+ L G ++N +
Sbjct: 423 NAGGKRAQDCMLLAAEGDSALSLLRTGL-TLGKSNPSGPSFDFCGMISLGGVIMNACKKV 481
Query: 515 --------------HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQD 560
++Q+ N + +V++LGL ++ Y T E+ LRYG ++ DQD
Sbjct: 482 TNITTDSGETIMVRNEQLTNNKVLQGIVQVLGLDFNCHYKTQEERAKLRYGCIVACVDQD 541
Query: 561 QDGS-HIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREE--LSFYSLPEFEEWKE 617
DG I GL++ + H WP L+ F++ +TP+I+ + + + FY EF+ W +
Sbjct: 542 LDGCGKILGLLLAYFHLFWPQLIIHGFVKRLLTPLIRVYEKGKTVPVEFYYEQEFDAWAK 601
Query: 618 ETTNWHTYKIKYYK 631
+ T+ + +KYYK
Sbjct: 602 KQTSLANHTVKYYK 615
Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP--------- 709
R EPE+Y+P++P+ ++ GW +I+ ++ + +P
Sbjct: 831 RAEPEYYVPVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKNNPKHELLHYAI 890
Query: 710 ------LPMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTL 763
LP++P NFKG + G + + + + ITEL + T Y +++
Sbjct: 891 KHKITILPLRPSNYNFKGHLKRFGQYYYSYGTYVISEQRNIITITELPLRVPTVAYIESI 950
>sp|O94623|REV1_SCHPO DNA repair protein rev1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rev1 PE=3 SV=3
Length = 935
Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 125/428 (29%), Positives = 202/428 (47%), Gaps = 84/428 (19%)
Query: 1319 GGYMEAKKRKLEEQ---FELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEEL 1375
Y K+RKL+ Q + DS+ +F G+AI +NGYTK PS EL
Sbjct: 34 ADYFSRKQRKLQNQNAALYKSIDEDSKSDLFHGLAIAINGYTK-----------PSYTEL 82
Query: 1376 KALMMLHGGIYHHYESSRTT--HIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLD 1433
+ +++ +GG + Y +T+ +++ S L +K ++ K K++KPEWIVD I K+L
Sbjct: 83 RQMIVSNGGTFIQYVDGKTSISYLVCSFLTPSKARQWK-HQKVVKPEWIVDCIKQKKILP 141
Query: 1434 HKKYLLYTGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSEA 1493
Y + + A+ + P + ++TSS + D T+ESK++
Sbjct: 142 WINYRTFQASSAQATLSFVA----SKPSQPEGNLEDIQTSSQEEEHDNEKDKTKESKAKG 197
Query: 1494 VNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRL 1553
+ S +A+ + + Q +K P + S+T+N +DFL F++ SRL
Sbjct: 198 FLDDLS-GLSASSLHNYQLLKN------------PNVRNSTTQN---QDFLENFFSSSRL 241
Query: 1554 HHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPE 1613
HHLST + FK NE++ + E +R I +D+ + F
Sbjct: 242 HHLSTWKADFK---NEIQ----AMTTASEPVRP------IMKDKSKKSRF---------- 278
Query: 1614 PVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNR 1673
++H+D DCFF SV R EL+ +PVAVAHG NS +
Sbjct: 279 --LLHVDFDCFFASVSTRFSHELRLKPVAVAHGIKNSE-------------------IAS 317
Query: 1674 MGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYN-LIASLTLNIEAVSL 1732
R++G+ NGM+VG A CP+L++V YDF Y+ VS Y L+ +L I+ +S+
Sbjct: 318 CNYEARKFGIKNGMYVGTAKNLCPSLRVVDYDFGAYESVSREFYTILVNTLHDYIKVISI 377
Query: 1733 YTNESFLN 1740
+E+ L+
Sbjct: 378 --DEALLD 383
Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 142/305 (46%), Gaps = 45/305 (14%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ +S DE +D + + + A +R + ++T C S G G N L ARLA +K
Sbjct: 372 IKVISIDEALLDITSSVSSFQ-DCFEIAESIRSQVREKTNCEVSVGIGPNVLLARLALRK 430
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL-NSLGAQTCGDLQNISLKRLQNE 2017
AKP+ + L+ + + D + + + DLPGVG S KL N G +T G LQ I LQ
Sbjct: 431 AKPHNVYSLSIENVFDVLSPLSVQDLPGVGSSQAQKLFNLYGVRTIGQLQRIEKFNLQET 490
Query: 2018 VGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKR 2077
G GL LY RG D + E R+S+S +VN+G+RF ++ FLK+L E+ R
Sbjct: 491 FGVNYGLHLYNISRGIDTDIINNETPRRSISVDVNWGVRFVFQEDGIDFLKRLLHELLSR 550
Query: 2078 LEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLV 2137
+ + ++ I L+++ R+ AP K+LG G TKSS+
Sbjct: 551 MGKCQVLLHQIQLRILKRADGAPFSPPKYLGAGEVTSFTKSST----------------- 593
Query: 2138 RSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGI 2197
+ + ++S + I K+V + + VDP ++RGIG+
Sbjct: 594 -------------------FTSATNSFDL-------IWKKVTSMYKTINVDPGDVRGIGL 627
Query: 2198 QVSKL 2202
Q K+
Sbjct: 628 QALKI 632
Score = 38.5 bits (88), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 1182 PKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQLISLQQDKQLPAIQVISI 1241
P + S+T+N +DFL F++ SRLHHLST + FK + + + + P ++
Sbjct: 219 PNVRNSTTQN---QDFLENFFSSSRLHHLSTWKADFKNEIQAMTTASE----PVRPIMKD 271
Query: 1242 RSPRARPPRR---SSTMGSMFKQYVNELREKHDGVFRGIE 1278
+S ++R S+ ++ +ELR K V GI+
Sbjct: 272 KSKKSRFLLHVDFDCFFASVSTRFSHELRLKPVAVAHGIK 311
Score = 36.2 bits (82), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 1813 SLQEMRTMLREWMCESQPEPS--DIEMFSEYLSNLV-EERHLNPIVILLRFLRRHVGKKE 1869
SL+++R +L +W ++ P+ D+ F+ Y+ ++ EE++L ++L++L + K+
Sbjct: 846 SLEDLRGLLTKWYSKASKGPNIHDVNYFANYVCRVIREEKNLGKAQMMLKWLYQLNRKEC 905
Query: 1870 STVWAEAYQEMLSCVQ 1885
+ W +A +++ VQ
Sbjct: 906 NKPWEKAIDKIIETVQ 921
>sp|P0C9C2|TOP2_ASFK5 DNA topoisomerase 2 OS=African swine fever virus (isolate
Pig/Kenya/KEN-50/1950) GN=Ken-124 PE=3 SV=1
Length = 1192
Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 155/618 (25%), Positives = 269/618 (43%), Gaps = 118/618 (19%)
Query: 80 YVPGLYKIFDEILVNACDNKQ----RDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKD 135
+ P L KIFDE++VNA D+++ + K+ IKI+ ++ S N+G GIP+V+H+
Sbjct: 50 HCPALLKIFDELIVNATDHERACHNKTKKVTYIKISFDK--GVFSCENDGPGIPIVKHEQ 107
Query: 136 EKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGA 195
+ ++ VP + + L +N N +D + GG NG G
Sbjct: 108 ASLIAKRDVY-------------------VPEVASCYFLAGTNINKAKDCIKGGTNGVGL 148
Query: 196 KLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFK 255
KL + S ++ T+ + + + Q + + P I + S++ FT+I P +
Sbjct: 149 KLAMVHSQWAILTTA--DGAQKYVQHINQRLDNIEPPTI-TPSREMFTRIELMPVYQELG 205
Query: 256 MT-----SLDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDED 309
+ D+ I RA AA K ++ N + + K+YT
Sbjct: 206 YAQPLSETEQADLSAWIYLRACQCAAYVGKGTTIYYNDKPCSTSSVMALAKMYTLVTA-- 263
Query: 310 GDPVKIIYE----------NVNPRWEVAI-APSDRGFQQVSFVNSIATTKGGRHV----D 354
P IY +++P A+ +P + F+ VS +N + KG HV
Sbjct: 264 --PNSTIYTTTIKADAKPYSLHPLQVAAVVSPKFKKFEHVSIINGVNCVKG-EHVTFLKK 320
Query: 355 AVVDAIVKQIIEVVKKKNKDL----GCTIIMLF------GNKFNNVKNNKLQMAKTLIDI 404
A+ + +VK+ + VK KN+ C+ I + G ++ + ++L +A+ +
Sbjct: 321 AINEMVVKKFQQTVKDKNRKTTLRDSCSNIFVVIVGSIPGIEWTGQRKDELSIAENVF-- 378
Query: 405 GVRLGGMALKPFQVKNHIWI---FINCL---IVNPTFDSQTKENMTLQKGSFGSTCVPKL 458
K H I F+ + IV+ S +K++ Q V K
Sbjct: 379 --------------KTHYSIPSSFLTSMTRSIVDILLQSISKKDNHKQID------VDKY 418
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGR--------DKYGVFPLRGKLLNV 510
A +AG K + DC L+ EGDSA SL +GL +G+ D G+ L G ++N
Sbjct: 419 TRARNAGGKKAQDCMLLAAEGDSALSLLRAGL-TLGKSNPSGPSFDFCGMISLGGVIMNA 477
Query: 511 REAT--------------HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIM 556
+ ++Q+ N + +V++LGL ++ Y T E+ LRYG ++
Sbjct: 478 CKKVTNITTDSGETIMVRNEQLTNNKVLQGIVQVLGLDFNCHYKTQEERAKLRYGCIVAC 537
Query: 557 TDQDQDGS-HIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREE--LSFYSLPEFE 613
DQD DG I GL++ + H WP L+ F++ +TP+I+ + + FY EF+
Sbjct: 538 VDQDLDGCGKILGLLLAYFHLFWPQLIVHGFVKRLLTPLIRVYEKGNTVPVEFYYEQEFD 597
Query: 614 EWKEETTNWHTYKIKYYK 631
W ++ T+ + +KYYK
Sbjct: 598 AWAKKQTSLANHTVKYYK 615
Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP--------- 709
R EPE+Y+P++P+ ++ GW +I+ ++ I +P
Sbjct: 831 RAEPEYYVPVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYIDKNNPKHELLHYAI 890
Query: 710 ------LPMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTL 763
LP++P NFKG + G + + + + ITEL + T Y +++
Sbjct: 891 DHKITVLPLRPSNYNFKGHLKRFGQYYYSYGTYVVSEQRNMITITELPLRVPTVAYIESI 950
>sp|P0C9C0|TOP2_ASFP4 DNA topoisomerase 2 OS=African swine fever virus (isolate
Tick/South Africa/Pretoriuskop Pr4/1996) GN=Pret-124
PE=3 SV=1
Length = 1192
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 150/614 (24%), Positives = 265/614 (43%), Gaps = 110/614 (17%)
Query: 80 YVPGLYKIFDEILVNACDNKQ----RDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKD 135
+ P L KIFDEI+VNA D+++ + K+ IKI+ ++ S N+G GIP+ +H+
Sbjct: 50 HCPALLKIFDEIIVNATDHERACHSKTKKVTYIKISFDK--GVFSCENDGPGIPIAKHEQ 107
Query: 136 EKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGA 195
+ ++ VP + H L +N N +D + GG NG G
Sbjct: 108 ASLIAKRDVY-------------------VPEVASCHFLAGTNINKAKDCIKGGTNGVGL 148
Query: 196 KLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFK 255
KL + S++ + T+ +K + + + + P + S++ FT+I P +
Sbjct: 149 KLAMV-HSQWAILTTADGAQKYVQHI--NQRLDIIEPPTITPSREMFTRIELMPVYQELG 205
Query: 256 MT-----SLDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDED 309
+ D+ I RA AA K ++ N + + K+YT +
Sbjct: 206 YAEPLSETEQADLSAWIYLRACQCAAYVGKGTTIYYNDKPCRTGSVMALAKMYTLLSAPN 265
Query: 310 GD-PVKIIYENVNP------RWEVAIAPSDRGFQQVSFVNSIATTKGGRHV----DAVVD 358
I + P + ++P + F+ VS +N + KG HV + +
Sbjct: 266 STIHTATIKADAKPYSLHPLQVAAVVSPKFKKFEHVSVINGVNCVKG-EHVTFLKKTINE 324
Query: 359 AIVKQIIEVVKKKNKDL----GCTIIMLF------GNKFNNVKNNKLQMAKTLIDIGVRL 408
+VK+ + +K KN+ C+ I + G ++ + ++L +A+ +
Sbjct: 325 MVVKKFQQTIKDKNRKTTLRDSCSNIFIVIVGSIPGIEWTGQRKDELSIAENVF------ 378
Query: 409 GGMALKPFQVKNHIWI---FINCL---IVNPTFDSQTKENMTLQKGSFGSTCVPKLEDAN 462
K H I F+ + IV+ S +K++ Q V K A
Sbjct: 379 ----------KTHYSIPSSFLTSMTKSIVDILLQSISKKDNHKQVD------VDKYTRAR 422
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGR--------DKYGVFPLRGKLLNVREAT 514
+AG K + DC L+ EGDSA SL +GL +G+ D G+ L G ++N +
Sbjct: 423 NAGGKRAQDCMLLAAEGDSALSLLRTGL-TLGKSNPSGPSFDFCGMISLGGVIMNACKKV 481
Query: 515 --------------HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQD 560
++Q+ N + +V++LGL ++ Y T E+ LRYG ++ DQD
Sbjct: 482 TNITTDSGETIMVRNEQLTNNKVLQGIVQVLGLDFNCHYKTQEERAKLRYGCIVACVDQD 541
Query: 561 QDGS-HIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREE--LSFYSLPEFEEWKE 617
DG I GL++ + H WP L+ F++ +TP+I+ + + + FY EF+ W +
Sbjct: 542 LDGCGKILGLLLAYFHLFWPQLIIHGFVKRLLTPLIRVYEKGKTVPVEFYYEQEFDAWAK 601
Query: 618 ETTNWHTYKIKYYK 631
+ T+ + +KYYK
Sbjct: 602 KQTSLANHTVKYYK 615
Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP--------- 709
R EPE+Y+P++P+ ++ GW +I+ ++ + +P
Sbjct: 831 RAEPEYYVPVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKNNPKHELLHYAI 890
Query: 710 ------LPMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTL 763
LP++P NFKG + G + + + + ITEL + T Y +++
Sbjct: 891 KHKITILPLRPSNYNFKGHLKRFGQYYYSYGTYVISEQRNIITITELPLRVPTVAYIESI 950
>sp|Q00942|TOP2_ASFB7 DNA topoisomerase 2 OS=African swine fever virus (strain Badajoz
1971 Vero-adapted) GN=TOP PE=3 SV=1
Length = 1192
Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 148/614 (24%), Positives = 264/614 (42%), Gaps = 110/614 (17%)
Query: 80 YVPGLYKIFDEILVNACDNKQ----RDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKD 135
+ P L KIFDE++VNA D+++ + K+ IKI+ ++ S N+G GIP+ +H+
Sbjct: 50 HCPALLKIFDELIVNATDHERACHSKTKKVTYIKISFDK--GVFSCENDGPGIPIAKHEQ 107
Query: 136 EKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGA 195
+ ++ VP + L +N N +D + GG NG G
Sbjct: 108 ASLIAKRDVY-------------------VPEVASCFFLAGTNINKAKDCIKGGTNGVGL 148
Query: 196 KLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFK 255
KL + S++ + T+ +K +Q+ + + P + S++ FT+I P +
Sbjct: 149 KLAMV-HSQWAILTTADGAQKYVQQI--NQRLDIIEPPTITPSREMFTRIELMPVYQELG 205
Query: 256 MT-----SLDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDED 309
+ D+ I RA AA K ++ N + + K+YT +
Sbjct: 206 YAEPLSETEQADLSAWIYLRACQCAAYVGKGTTIYYNDKPCRTGSVMALAKMYTLLSAPN 265
Query: 310 GD-PVKIIYENVNP------RWEVAIAPSDRGFQQVSFVNSIATTKGGRHV----DAVVD 358
I + P + ++P + F+ VS +N + KG HV + +
Sbjct: 266 STIHTATIKADAKPYSLHPLQVAAVVSPKFKKFEHVSIINGVNCVKG-EHVTFLKKTINE 324
Query: 359 AIVKQIIEVVKKKNKDL----GCTIIMLF------GNKFNNVKNNKLQMAKTLIDIGVRL 408
++K+ + +K KN+ C+ I + G ++ + ++L +A+ +
Sbjct: 325 MVIKKFQQTIKDKNRKTTLRDSCSNIFVVIVGSIPGIEWTGQRKDELSIAENVF------ 378
Query: 409 GGMALKPFQVKNHIWI---FINCL---IVNPTFDSQTKENMTLQKGSFGSTCVPKLEDAN 462
K H I F+ + IV+ S +K K + V K A
Sbjct: 379 ----------KTHYSIPSSFLTSMTRSIVDILLQSISK------KDNHKQVDVDKYTRAR 422
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGR--------DKYGVFPLRGKLLNVREAT 514
+AG K + DC L+ EGDSA SL +GL +G+ D G+ L G ++N +
Sbjct: 423 NAGGKRAQDCMLLAAEGDSALSLLRTGL-TLGKSNPSGPSFDFCGMISLGGVIMNACKKV 481
Query: 515 --------------HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQD 560
++Q+ N + +V++LGL ++ Y T E+ LRYG ++ DQD
Sbjct: 482 TNITTDSGETIMVRNEQLTNNKVLQGIVQVLGLDFNCHYKTQEERAKLRYGCIVACVDQD 541
Query: 561 QDGS-HIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREEL--SFYSLPEFEEWKE 617
DG I GL++ + H WP L+ F++ +TP+I+ + + + FY EF+ W +
Sbjct: 542 LDGCGKILGLLLAYFHLFWPQLIIHGFVKRLLTPLIRVYEKGKTMPVEFYYEQEFDAWAK 601
Query: 618 ETTNWHTYKIKYYK 631
+ T+ + +KYYK
Sbjct: 602 KQTSLVNHTVKYYK 615
Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP--------- 709
R EPE+Y+P++P+ ++ GW +I+ ++ + ++P
Sbjct: 831 RAEPEYYVPVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKDNPKHELLHYAI 890
Query: 710 ------LPMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTL 763
LP++P NFKG + G + + + ITEL + T Y +++
Sbjct: 891 KHKITILPLRPSNYNFKGHLKRFGQYYYSYGTYDISEQRNIITITELPLRVPTVAYIESI 950
>sp|P34203|TOP2_ASFM2 DNA topoisomerase 2 OS=African swine fever virus (isolate
Tick/Malawi/Lil 20-1/1983) GN=Mal-120 PE=3 SV=1
Length = 1191
Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 147/613 (23%), Positives = 264/613 (43%), Gaps = 109/613 (17%)
Query: 80 YVPGLYKIFDEILVNACDNKQ----RDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKD 135
+ P L KIFDE++VNA D+++ + K+ IKI+ ++ + N+G GIP+ +H+
Sbjct: 50 HCPALLKIFDELIVNATDHERACHSKTKKVTYIKISFDK--GVFACENDGPGIPIAKHEQ 107
Query: 136 EKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGA 195
+ ++ VP + H L +N N +D + GG NG G
Sbjct: 108 ASLIAKRDVY-------------------VPEVASCHFLAGTNINKAKDCIKGGTNGVGL 148
Query: 196 KLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFK 255
KL + S++ + T+ +K + + + + P + S++ FT+I P +
Sbjct: 149 KLAMV-HSQWAILTTADGAQKYVQHI--NQRLDIIEPPTITPSREMFTRIELMPVYQELG 205
Query: 256 MT-----SLDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYT------ 303
+ D+ I RA AA K ++ N + + K+YT
Sbjct: 206 YAQPLSETEQADLSAWIYLRACQCAAYVGKGTTIYYNDKPCNTGSVMALAKMYTLLSAPN 265
Query: 304 -----DRQDEDGDPVKIIYENVNPRWEVAI-APSDRGFQQVSFVNSIATTKGGRHV---- 353
D P +++P A+ +P + F+ VS +N + KG HV
Sbjct: 266 STIHTTAIKADAKPY-----SLHPLQVAAVVSPKFKKFEHVSIINGVNCVKG-EHVTFLK 319
Query: 354 DAVVDAIVKQIIEVVKKKNKDL----GCTIIMLF------GNKFNNVKNNKLQMAKTLID 403
+ + +VK+ + +K KN+ C+ I + G ++ + ++L +A+ +
Sbjct: 320 KTINEMVVKKFQQTIKDKNRKTTLRDSCSNIFVVIVGSIPGIEWTGQRKDELSIAENVFK 379
Query: 404 IGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTCVPKLEDAND 463
+ + + + IV+ S +K K + V K AN
Sbjct: 380 ----------THYSIPSSFLTNMTRSIVDILLQSISK------KDNHKQVDVDKYTRAN- 422
Query: 464 AGTKNSIDCTLILTEGDSAKSLAVSGLGVVGR--------DKYGVFPLRGKLLNVREAT- 514
AG K + DC L+ EGDSA SL +GL +G+ D G+ L G ++N +
Sbjct: 423 AGGKKAQDCMLLAAEGDSALSLVRAGL-TLGKSNPSGPSFDFCGMISLGGVIMNACKKVT 481
Query: 515 -------------HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQ 561
++Q+ N + +V++LGL ++ Y T E+ LRYG ++ DQD
Sbjct: 482 NITTDSGETIMVRNEQLTNNKVLQGIVQVLGLDFNCHYKTQEERAKLRYGCIVACVDQDL 541
Query: 562 DGS-HIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREE--LSFYSLPEFEEWKEE 618
DG I GL++ + H WP L+ F++ +TP+I+ + + + FY EF+ W ++
Sbjct: 542 DGCGKILGLLLAYFHLFWPQLIIHGFVKRLLTPLIRVYEKGKTVPVEFYYEQEFDAWAKK 601
Query: 619 TTNWHTYKIKYYK 631
T+ + +KYYK
Sbjct: 602 QTSLANHTVKYYK 614
Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP--------- 709
R EPE+Y+P++P+ ++ GW +I+ ++ + +P
Sbjct: 830 RAEPEYYVPVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKNNPKHELLHYAI 889
Query: 710 ------LPMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTL 763
LP++P NFKG + G + + + + ITEL + T Y +++
Sbjct: 890 ERKITVLPLRPSNYNFKGHLKRFGQYYYSYGTYVVSEQRNIITITELPLRVPTVAYIESI 949
>sp|P09176|TOPL_BPT4 DNA topoisomerase large subunit OS=Enterobacteria phage T4 GN=39
PE=1 SV=2
Length = 516
Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 149/531 (28%), Positives = 234/531 (44%), Gaps = 100/531 (18%)
Query: 40 SQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNK 99
S +EHI R YIGS T ++ + + YVPGL K+ DEI+ N+ D
Sbjct: 10 SDIEHIKKRSGMYIGSSANETHERFMFGK------WESVQYVPGLVKLIDEIIDNSVDEG 63
Query: 100 QRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEED 159
R KI V + N ++V +NG+GIP K PT +
Sbjct: 64 IRTKFKFANKINVTIKNNQVTVEDNGRGIPQAMVK-----TPT---------------GE 103
Query: 160 KVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFK 219
++ G P + N+ D++++VTGG NG G+ L NIFS FV ET +
Sbjct: 104 EIPG--PVAAWTIPKAGGNFGDDKERVTGGMNGVGSSLTNIFSVMFVGETGDGQ------ 155
Query: 220 QVWKDNMSKVTSPEIKSGSKDDF------TKITFTPDLTKFKMTSLDKDMVDLITRRAYD 273
+N+ S +++ S +D T++TF PD F+ L + +D+ R
Sbjct: 156 ----NNIVVRCSNGMENKSWEDIPGKWKGTRVTFIPDFMSFETNELSQVYLDITLDRLQT 211
Query: 274 AAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDR 333
A D++ NG+K+ NF+ Y + Y D I+ E N +A+ S
Sbjct: 212 LAVVYPDIQFTFNGKKVQ-GNFKKYARQY--------DEHAIVQEQENC--SIAVGRSPD 260
Query: 334 GFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNK-DLG------CTIIMLFGNK 386
GF+Q+++VN+I T GG H+D +D I + +I +K+K K D+ C I++F
Sbjct: 261 GFRQLTYVNNIHTKNGGHHIDCAMDDICEDLIPQIKRKFKIDVTKARVKECLTIVMF--- 317
Query: 387 FNNVKNNKL--QMAKTLIDIGVRLGGMALKPF-QVKNHIW---------IFINCLIVNPT 434
++KN +L Q + L PF ++++HI I N I+ P
Sbjct: 318 VRDMKNMRLIRQTKERLT-----------SPFGEIRSHIQLDAKKISRDILNNEAILMPI 366
Query: 435 FDSQTKENM-------TLQKGSFGSTCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAV 487
++ + T V K AN G D TL LTEGDSA +
Sbjct: 367 IEAALARKLAAEKAAETKAAKKASKAKVHKHIKANLCG--KDADTTLFLTEGDSAIGYLI 424
Query: 488 SGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKK 538
V ++ +G +PLRGK+LN ++ +L+N E+ ++ I GL +K
Sbjct: 425 D---VRDKELHGGYPLRGKVLNSWGMSYADMLKNKELFDICAITGLVLGEK 472
>sp|P47249|GYRB_MYCGE DNA gyrase subunit B OS=Mycoplasma genitalium (strain ATCC 33530 /
G-37 / NCTC 10195) GN=gyrB PE=3 SV=1
Length = 650
Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 166/643 (25%), Positives = 271/643 (42%), Gaps = 149/643 (23%)
Query: 42 LEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQR 101
LE + RP YIGS T GL+ + EI+ N+ D +
Sbjct: 21 LEAVRKRPGMYIGS-----------------------TGEEGLHHMIWEIVDNSID-EAM 56
Query: 102 DPKMNCIKITVNQETNTIS-VWNNGKGIPVVEH-KDEKMFVPTMIFGHLLTSSNYNDEED 159
+ +K+T+ E N ++ V ++G+GIPV H K + V T
Sbjct: 57 GGFASFVKLTL--EDNFVTRVEDDGRGIPVDIHPKTNRSTVET----------------- 97
Query: 160 KVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFK 219
+F L ++++ KV+GG +G GA + N SS F V + KK F
Sbjct: 98 ---------VFTVLHAGGKFDNDSYKVSGGLHGVGASVVNALSSSFKVWV-FRQNKKYFL 147
Query: 220 QVWKDNMSKVTSPEIKSGS--KDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAS 277
+ KV ++ G+ K+ T + F PD + + + + +I R A
Sbjct: 148 SF--SDGGKVIGDLVQEGNSEKEHGTIVEFVPDFSVMEKSDYKQT---VIVSRLQQLAFL 202
Query: 278 TKDVKV-FLNGEKLPVKNFQ--------DYVKLYTDRQ---------DEDGDPVKIIY-- 317
K +++ F++ K ++F +Y+ + + DE + VK +
Sbjct: 203 NKGIRIDFVDNRKQNPQSFSWKYDGGLVEYIHHLNNEKEPLFNEVIADEKTETVKAVNRD 262
Query: 318 ENVNPRWEVAIAPSDRGFQQV-SFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLG 376
EN + EVA + Q + SF N+I TT+GG HV+ +A+VK II +NK L
Sbjct: 263 ENYTVKVEVAFQYNKTYNQSIFSFCNNINTTEGGTHVEGFRNALVK-IINRFAVENKFL- 320
Query: 377 CTIIMLFGNKFNNVKNNKLQMAKTLIDI--------------GVRLGGMALKPFQVKNHI 422
K ++ K N+ + + L I +LG ++P
Sbjct: 321 ---------KDSDEKINRDDVCEGLTAIISIKHPNPQYEGQTKKKLGNTEVRPLVNSVVS 371
Query: 423 WIFINCLIVNPT----------------FDSQTKENMTLQKGSFGSTCVP-KLEDANDAG 465
IF ++ NP SQ +T +K F S +P KL D
Sbjct: 372 EIFERFMLENPQEANAIIRKTLLAQEARRRSQEARELTRRKSPFDSGSLPGKLADCT--- 428
Query: 466 TKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKY--GVFPLRGKLLNVREATHKQILENAE 523
T++ L + EGDSA G GRD+Y + PLRGK+LNV ++ +QI NAE
Sbjct: 429 TRDPSISELYIVEGDSA-----GGTAKTGRDRYFQAILPLRGKILNVEKSNFEQIFNNAE 483
Query: 524 INNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR 583
I+ LV +G + +++ LRY +++IMTD D DG+HI+ L++ F
Sbjct: 484 ISALVMAIGCGIKPDF----ELEKLRYSKIVIMTDADVDGAHIRTLLLTFFFR-----FM 534
Query: 584 LPFLEE---FIT--PIIKATKAREELSFYSLPEFEEWKEETTN 621
P +E+ FI P+ K + + ++L ++ + E+WK + N
Sbjct: 535 YPLVEQGNIFIAQPPLYKVSYSHKDLYMHTDVQLEQWKSQNPN 577
>sp|P47720|GYRB_MYCGA DNA gyrase subunit B OS=Mycoplasma gallisepticum (strain R(low /
passage 15 / clone 2)) GN=gyrB PE=3 SV=2
Length = 648
Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 154/603 (25%), Positives = 261/603 (43%), Gaps = 110/603 (18%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPV-VEHKDEKMFVP 141
GL+ + EI+ N+ D + +K+T+ ++ + V ++G+GIPV + K K V
Sbjct: 38 GLHHMIWEIIDNSVD-EMMAGYGTTVKLTL-KDNYLVEVEDDGRGIPVDIHEKTNKSTVE 95
Query: 142 TMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIF 201
T V+ + G S Y+ ++GG +G GA + N
Sbjct: 96 T---------------------VLTILHAGGKFDSDTYS-----MSGGLHGVGASVVNAL 129
Query: 202 SSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLD 260
SS F V + +YK + + +KD + EI + SK T+I F PD + + D
Sbjct: 130 SSSFKVWVN-RDYKIHYIE-FKDGGVPLKPLEIIGTDSKKQGTRIQFVPDFSIMEQFEYD 187
Query: 261 KDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDY-----VKLYTDRQDEDGDPV-- 313
+ +I R A K +K N E+ K Q++ +K Y + + +P+
Sbjct: 188 ET---IIADRIEQLAFLNKGIKFIFNDERTDKKTKQEWLYEGGIKQYVENLNASKEPIIP 244
Query: 314 KIIYEN-------------VNPRWEVAIAPSDRGFQQV-SFVNSIATTKGGRHVDAVVDA 359
+IIY V EVA ++ + SF N+I T +GG H + +A
Sbjct: 245 QIIYGEKKTKVTLPKRNLEVTMLLEVAFQYTNGYYNSTYSFCNNIHTNQGGTHEEGFKNA 304
Query: 360 IVKQIIEV-------------VKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGV 406
+ K I + K++ G T I+ ++K+++ Q D
Sbjct: 305 LYKIINRYALEKKFIKETDGKISKEDLSEGLTAII-------SIKHSEPQYQGQTKD--- 354
Query: 407 RLGGMALKPFQ---VKNHIWIF----------INCLIVNPTFDSQTKENM--TLQKGSFG 451
RLG ++ F V + F I V+ F + E + +K F
Sbjct: 355 RLGNTEVREFTNSVVSELLERFFLENPEEAAKITAKAVSAMFSRKRSEAALESARKSPFE 414
Query: 452 STCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKY--GVFPLRGKLL 508
S +P KL D TK+ L + EGDSA A SG RD++ + PLRGK+L
Sbjct: 415 SASLPGKLADCT---TKDMEISELYIVEGDSAGGSAKSG-----RDRFYQAILPLRGKVL 466
Query: 509 NVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKG 568
NV +A H++I +N EI L+ +G + +++ + +RY +++IMTD D DG+HI+
Sbjct: 467 NVEKANHEKIFKNEEIRTLITAIGAGVNPEFS----LDKIRYNKIIIMTDADVDGAHIRI 522
Query: 569 LIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIK 628
L++ F + L+ + P+ + + ++ YS + EEWK + N Y+++
Sbjct: 523 LLLTFFFRHMFPLIEKGHVYIAQPPLYRVSYNKQNKYIYSDAQLEEWKNQNPNVR-YELQ 581
Query: 629 YYK 631
YK
Sbjct: 582 RYK 584
>sp|P22447|GYRB_MYCPN DNA gyrase subunit B OS=Mycoplasma pneumoniae (strain ATCC 29342 /
M129) GN=gyrB PE=1 SV=1
Length = 650
Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 171/660 (25%), Positives = 270/660 (40%), Gaps = 164/660 (24%)
Query: 42 LEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQR 101
LE + RP YIGS T GL+ + EI+ N+ D +
Sbjct: 21 LEAVRKRPGMYIGS-----------------------TGEEGLHHMIWEIIDNSID-EAM 56
Query: 102 DPKMNCIKITVNQETNTISVWNNGKGIPVVEH-KDEKMFVPTMIFGHLLTSSNYNDEEDK 160
+ +K+T+ TI V ++G+GIPV H K + V T
Sbjct: 57 GGFASTVKLTLKDNFVTI-VEDDGRGIPVDIHPKTNRSTVET------------------ 97
Query: 161 VTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQ 220
+F L ++++ KV+GG +G GA + N SS F V + E+++ F
Sbjct: 98 --------VFTVLHAGGKFDNDSYKVSGGLHGVGASVVNALSSSFKVWVA-REHQQYFLA 148
Query: 221 VWKDNMSKVTSPEIKSG--SKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAST 278
N +V + G K+ TK+ F PD T + + + +I R A
Sbjct: 149 F--HNGGEVIGDLVNEGKCDKEHGTKVEFVPDFTVMEKSDYKQT---VIASRLQQLAFLN 203
Query: 279 KDVKV--------------------------FLNGEKLPVKNFQDYVKLYTDRQDEDGDP 312
K +++ LN EK P+ F+D + E D
Sbjct: 204 KGIQIDFVDERRQNPQSFSWKYDGGLVQYIHHLNNEKEPL--FEDIIF------GEKTDT 255
Query: 313 VKIIY--ENVNPRWEVAIAPSDRGFQQV-SFVNSIATTKGGRHVDAVVDAIVKQIIEVVK 369
VK + E+ + EVA + Q + SF N+I TT+GG HV+ +A+VK II
Sbjct: 256 VKSVSRDESYTIKVEVAFQYNKTYNQSIFSFCNNINTTEGGTHVEGFRNALVK-IINRFA 314
Query: 370 KKNKDL--------------GCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKP 415
+NK L G T I+ ++K+ Q +LG ++P
Sbjct: 315 VENKFLKETDEKITRDDICEGLTAII-------SIKHPNPQYEG---QTKKKLGNTEVRP 364
Query: 416 FQVKNHIWIFINCLIVNPT----------------FDSQTKENMTLQKGSFGSTCVP-KL 458
IF ++ NP SQ +T +K F S +P KL
Sbjct: 365 LVNSIVSEIFERFMLENPQEANAIIRKTLLAQEARRRSQEARELTRRKSPFDSGSLPGKL 424
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKY--GVFPLRGKLLNVREATHK 516
D T++ L + EGDSA G GRD+Y + PLRGK+LNV ++ +
Sbjct: 425 ADCT---TRDPSISELYIVEGDSA-----GGTAKTGRDRYFQAILPLRGKILNVEKSHFE 476
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QI N EI+ LV +G + +++ LRY +++IMTD D DG+HI+ L++ F
Sbjct: 477 QIFNNVEISALVMAVGCGIKPDF----ELEKLRYNKIIIMTDADVDGAHIRTLLLTFFFR 532
Query: 577 NWPTLLRLPFLEE---FIT--PIIKATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
P +E+ +I P+ K + + ++L + + EEWK++ N Y ++ YK
Sbjct: 533 -----FMYPLVEQGNIYIAQPPLYKVSYSNKDLYMQTDVQLEEWKQQHPNLK-YNLQRYK 586
>sp|P12689|REV1_YEAST DNA repair protein REV1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=REV1 PE=1 SV=2
Length = 985
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 131/485 (27%), Positives = 200/485 (41%), Gaps = 144/485 (29%)
Query: 1329 LEEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHH 1388
L++Q++ + +S S IF+ I++NGYTK P +L +++LHGG + H
Sbjct: 150 LKDQYKDQISSQS-SKIFKNCVIYINGYTK-----------PGRLQLHEMIVLHGGKFLH 197
Query: 1389 YESSR--TTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYLLYTGTDAK 1446
Y SS+ THI+ASNLP K + K++ P+WIVDS+ +LL + Y L + D +
Sbjct: 198 YLSSKKTVTHIVASNLPLKKRIEF-ANYKVVSPDWIVDSVKEARLLPWQNYSLTSKLDEQ 256
Query: 1447 PLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSEAVNSEESKSEAANP 1506
QK +DN + S + SE S + +
Sbjct: 257 ------QK---------------------------KLDNCKTVNSIPLPSETSLHKGSKC 283
Query: 1507 IESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQY 1566
+ S ++S + N+ A + A + DFL ++ SRLHHLS
Sbjct: 284 VGSALLPVEQQSPVNLNNLEAKRIVA-----CDDPDFLTSYFAHSRLHHLSA-------- 330
Query: 1567 VNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEP-VIMHIDMDCFF 1625
WK +L +D+ L E ++ + +I HID DCFF
Sbjct: 331 --------------------WKANL---KDKFLNENIHKYTKITDKDTYIIFHIDFDCFF 367
Query: 1626 VSVGIRHHP------ELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTR 1679
+V + + +P+ V HG NS DI + N + R
Sbjct: 368 ATVAYLCRSSSFSACDFKRDPIVVCHGTKNS-------------DI---ASCNYVA---R 408
Query: 1680 EYGLGNGMFVGHALKKCPN-LKIV--PYDFEGYKEVSYCLY---------NLIASLTLNI 1727
YG+ NGM+V A K PN +K++ PY FE ++ S Y NLI ++++
Sbjct: 409 SYGIKNGMWVSQAEKMLPNGIKLISLPYTFEQFQLKSEAFYSTLKRLNIFNLILPISID- 467
Query: 1728 EAVSLYT------NESFLNA-LPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADS 1780
EAV + N + LNA L E+IRQE+ T I C+DS
Sbjct: 468 EAVCVRIIPDNIHNTNTLNARLCEEIRQEIFQG--------------TNGCTVSIGCSDS 513
Query: 1781 HTLVR 1785
L R
Sbjct: 514 LVLAR 518
Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 131/230 (56%), Gaps = 16/230 (6%)
Query: 1929 LRETIAKET-GCTCSTGFGSNKLQARLATKKAKPNGQFHLT--PQIISDFMLNIPLSDLP 1985
+R+ I + T GCT S G + + ARLA K AKPNG +++T + +F + L DLP
Sbjct: 493 IRQEIFQGTNGCTVSIGCSDSLVLARLALKMAKPNG-YNITFKSNLSEEFWSSFKLDDLP 551
Query: 1986 GVGHSLLFKLNSL--GAQTCGDLQ-NISLKRLQNEVGNKNGLTLYKHCRGEDDKE---LT 2039
GVGHS L +L S + DL+ +L L+ VG+K G+ ++ +G+DD+E +
Sbjct: 552 GVGHSTLSRLESTFDSPHSLNDLRKRYTLDALKASVGSKLGMKIHLALQGQDDEESLKIL 611
Query: 2040 FE----HQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVR 2095
++ QRKS+S ++N+GIRF+N +++ F+++ + ++L E+ ITLKLM R
Sbjct: 612 YDPKEVLQRKSLSIDINWGIRFKNITQVDLFIERGCQYLLEKLNEINKTTSQITLKLMRR 671
Query: 2096 SAEAPREASKFLGHGVCDYITKSSSL--PIYERPLIITYFLLLVRSAEAP 2143
+AP E K++G G CD ++SS L P E +I T L R+ P
Sbjct: 672 CKDAPIEPPKYMGMGRCDSFSRSSRLGIPTNEFGIIATEMKSLYRTLGCP 721
>sp|Q6D1H8|DPO4_ERWCT DNA polymerase IV OS=Erwinia carotovora subsp. atroseptica (strain
SCRI 1043 / ATCC BAA-672) GN=dinB PE=3 SV=1
Length = 352
Score = 115 bits (287), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 103/190 (54%), Gaps = 2/190 (1%)
Query: 1893 SSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQA 1952
S + ++ +S DE Y+D + + + + A +R TIA E T S G K A
Sbjct: 91 SRYTSLIEPLSLDEAYLDVTDS-PHCNGSATRIAEEIRRTIADELNLTASAGIAPIKFLA 149
Query: 1953 RLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLK 2012
++A++ KPNGQ+ +TP+ + DF+L +PL +PGVG +L G TC D++ +L
Sbjct: 150 KVASELNKPNGQYVITPEQVDDFLLALPLEKIPGVGKVTAKRLEERGLHTCADVRVYALA 209
Query: 2013 RLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAG 2072
L G K G L++ C+G DD++++ + QRKSV E N + E ++QL
Sbjct: 210 DLLKAFG-KFGRVLWERCQGIDDRQISPDRQRKSVGVEKTLAQDIHNWDQCENLIEQLYQ 268
Query: 2073 EVEKRLEEVK 2082
E+E RL+ VK
Sbjct: 269 ELEVRLKRVK 278
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 77/152 (50%), Gaps = 32/152 (21%)
Query: 1616 IMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMG 1675
I+H+DMDCF+ ++ +R +P L+D P+A+ G S+ R GV A +
Sbjct: 4 IIHVDMDCFYAAIEMRDNPRLRDIPLAI----GGSAD-RRGVISTANY------------ 46
Query: 1676 LNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTN 1735
R YG+ + M AL+ CP+L ++P E YK S + + + T IE +SL +
Sbjct: 47 -PARRYGVRSAMATATALRLCPHLTLLPGRMEVYKSTSRQIREIFSRYTSLIEPLSL--D 103
Query: 1736 ESFLNA------------LPEDIRQEVLDDLS 1755
E++L+ + E+IR+ + D+L+
Sbjct: 104 EAYLDVTDSPHCNGSATRIAEEIRRTIADELN 135
>sp|Q6MA55|DPO4_PARUW DNA polymerase IV OS=Protochlamydia amoebophila (strain UWE25)
GN=dinB PE=3 SV=1
Length = 350
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 101/185 (54%), Gaps = 6/185 (3%)
Query: 1896 SKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLA 1955
+ ++ +S DE ++D + + L + A +R+ I KE G T S G NK A++A
Sbjct: 96 TDLIEPLSLDEAFLDVTDV-DALRGSATWIAQEIRQLIWKERGLTASAGVAPNKFLAKVA 154
Query: 1956 TKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQ 2015
+ KPNGQF LTP+ + FM+++P+ + G+GH + KL+SLG CGDLQ + + LQ
Sbjct: 155 SDWHKPNGQFVLTPKEVDAFMVHLPVEKIFGIGHVMAKKLHSLGLMNCGDLQTLDITTLQ 214
Query: 2016 NEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQN----NQEMETFLKQLA 2071
G++ LY+ CRG D + + + RKS+S E + N QE+ +++L
Sbjct: 215 KLFGSR-AWNLYELCRGIDHRFVISDRIRKSLSVESTFLEDLNNLELCYQEIPNLIERLM 273
Query: 2072 GEVEK 2076
EK
Sbjct: 274 IRYEK 278
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 20/130 (15%)
Query: 1616 IMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMG 1675
I+HIDMD F+ SV +R P L +P+AV G+ K GV A +
Sbjct: 6 IIHIDMDAFYASVEMRDDPSLVLKPIAVG---GDPDK--RGVIATANY------------ 48
Query: 1676 LNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTN 1735
R++G+ + M A + CP+L I+ DF+ YK S ++ + T IE +SL +
Sbjct: 49 -LARKFGVRSAMPSWKAKQLCPDLIILFPDFDKYKRESKAIHEIFHLFTDLIEPLSL--D 105
Query: 1736 ESFLNALPED 1745
E+FL+ D
Sbjct: 106 EAFLDVTDVD 115
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 889,129,961
Number of Sequences: 539616
Number of extensions: 40894235
Number of successful extensions: 150117
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 997
Number of HSP's that attempted gapping in prelim test: 137309
Number of HSP's gapped (non-prelim): 10643
length of query: 2307
length of database: 191,569,459
effective HSP length: 134
effective length of query: 2173
effective length of database: 119,260,915
effective search space: 259153968295
effective search space used: 259153968295
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 70 (31.6 bits)