Query psy7164
Match_columns 2307
No_of_seqs 835 out of 5127
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 19:49:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7164.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7164hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03237 DNA topoisomerase 2; 100.0 2E-203 5E-208 1996.0 77.2 818 26-909 22-1169(1465)
2 PTZ00108 DNA topoisomerase 2-l 100.0 8E-200 2E-204 1976.7 74.8 818 28-909 2-1145(1388)
3 PLN03128 DNA topoisomerase 2; 100.0 5E-198 1E-202 1954.1 67.5 813 30-906 1-1135(1135)
4 COG0187 GyrB Type IIA topoisom 100.0 2E-143 5E-148 1324.3 41.3 500 33-633 8-573 (635)
5 KOG0355|consensus 100.0 2E-139 3E-144 1306.9 35.1 641 30-737 2-842 (842)
6 PTZ00109 DNA gyrase subunit b; 100.0 1E-133 3E-138 1286.3 46.6 512 29-619 99-761 (903)
7 PHA02569 39 DNA topoisomerase 100.0 1E-133 2E-138 1286.6 44.5 497 34-633 2-555 (602)
8 TIGR01058 parE_Gpos DNA topois 100.0 8E-133 2E-137 1285.0 47.9 512 30-645 5-600 (637)
9 PRK14939 gyrB DNA gyrase subun 100.0 6E-129 1E-133 1254.4 47.1 504 29-633 6-580 (756)
10 PRK05559 DNA topoisomerase IV 100.0 4E-126 8E-131 1228.9 50.3 518 27-645 5-598 (631)
11 PRK05644 gyrB DNA gyrase subun 100.0 6E-126 1E-130 1226.5 46.2 502 29-633 7-576 (638)
12 TIGR01055 parE_Gneg DNA topois 100.0 7E-124 1E-128 1203.6 44.1 499 30-633 4-565 (625)
13 TIGR01059 gyrB DNA gyrase, B s 100.0 4E-122 8E-127 1200.2 46.7 499 34-633 4-592 (654)
14 smart00433 TOP2c Topoisomerase 100.0 3E-116 6E-121 1133.4 38.8 473 83-633 1-539 (594)
15 KOG2093|consensus 100.0 3.2E-92 6.9E-97 874.1 27.9 648 1310-2206 10-734 (1016)
16 cd01701 PolY_Rev1 DNA polymera 100.0 2.3E-72 4.9E-77 701.8 42.2 401 1543-2202 1-404 (404)
17 PTZ00205 DNA polymerase kappa; 100.0 3.6E-61 7.9E-66 602.3 40.2 355 1613-2220 132-510 (571)
18 PRK01810 DNA polymerase IV; Va 100.0 4.7E-60 1E-64 592.7 40.9 373 1612-2190 3-384 (407)
19 PRK03609 umuC DNA polymerase V 100.0 5.3E-60 1.1E-64 594.4 39.7 401 1615-2219 1-422 (422)
20 PRK03858 DNA polymerase IV; Va 100.0 7.8E-60 1.7E-64 588.9 39.8 369 1613-2190 3-377 (396)
21 PRK03103 DNA polymerase IV; Re 100.0 7.5E-60 1.6E-64 591.2 39.0 374 1613-2190 2-385 (409)
22 PRK02794 DNA polymerase IV; Pr 100.0 2.8E-59 6E-64 587.4 40.3 371 1613-2190 35-410 (419)
23 PRK01216 DNA polymerase IV; Va 100.0 4.4E-59 9.5E-64 570.8 36.6 340 1615-2205 2-342 (351)
24 cd00424 PolY Y-family of DNA p 100.0 5E-59 1.1E-63 571.4 36.7 336 1617-2154 1-342 (343)
25 PRK14133 DNA polymerase IV; Pr 100.0 1.5E-58 3.3E-63 568.0 39.1 338 1613-2160 2-339 (347)
26 PRK03348 DNA polymerase IV; Pr 100.0 2.4E-58 5.3E-63 582.0 38.8 340 1613-2159 4-346 (454)
27 PRK03352 DNA polymerase IV; Va 100.0 1.9E-57 4.1E-62 558.1 37.8 339 1613-2158 4-343 (346)
28 cd01703 PolY_Pol_iota DNA Poly 100.0 1E-57 2.2E-62 563.5 34.1 346 1617-2201 1-379 (379)
29 cd03586 PolY_Pol_IV_kappa DNA 100.0 2.5E-57 5.5E-62 554.0 36.5 333 1617-2156 1-333 (334)
30 cd01702 PolY_Pol_eta DNA Polym 100.0 2E-57 4.3E-62 558.2 31.4 343 1617-2154 1-357 (359)
31 cd01700 PolY_Pol_V_umuC umuC s 100.0 5.6E-56 1.2E-60 544.8 33.4 332 1617-2155 1-343 (344)
32 PRK02406 DNA polymerase IV; Va 100.0 1.7E-55 3.6E-60 540.4 36.7 331 1621-2159 1-333 (343)
33 KOG2094|consensus 100.0 4.1E-56 9E-61 510.7 24.2 345 1611-2205 100-446 (490)
34 KOG2095|consensus 100.0 4.6E-52 9.9E-57 513.7 23.4 349 1610-2091 12-375 (656)
35 COG0389 DinP Nucleotidyltransf 100.0 2.4E-50 5.3E-55 495.3 35.6 343 1614-2206 1-348 (354)
36 PHA02592 52 DNA topisomerase I 100.0 2.4E-50 5.2E-55 498.6 24.0 241 657-903 142-439 (439)
37 cd00187 TOP4c DNA Topoisomeras 100.0 3.8E-48 8.3E-53 481.8 20.1 239 657-901 122-445 (445)
38 smart00434 TOP4c DNA Topoisome 100.0 6.7E-47 1.5E-51 473.1 22.9 238 657-895 142-444 (445)
39 cd03366 TOPRIM_TopoIIA_GyrB TO 100.0 1.9E-47 4.1E-52 389.4 10.6 112 472-592 1-114 (114)
40 cd03468 PolY_like DNA Polymera 100.0 2.3E-45 5E-50 449.0 30.9 327 1617-2154 1-333 (335)
41 PF00521 DNA_topoisoIV: DNA gy 100.0 8.2E-47 1.8E-51 473.7 11.1 238 657-899 120-426 (426)
42 cd01030 TOPRIM_TopoIIA_like TO 100.0 1.6E-46 3.5E-51 384.8 10.2 113 472-592 1-115 (115)
43 PRK05561 DNA topoisomerase IV 100.0 1.1E-45 2.4E-50 484.9 19.6 245 657-906 153-482 (742)
44 TIGR01061 parC_Gpos DNA topois 100.0 3E-45 6.4E-50 480.7 19.5 248 657-906 144-472 (738)
45 PRK13979 DNA topoisomerase IV 100.0 7.4E-45 1.6E-49 483.0 16.2 236 657-894 156-476 (957)
46 TIGR01062 parC_Gneg DNA topois 100.0 2.3E-44 4.9E-49 467.6 20.0 246 655-906 142-469 (735)
47 COG0188 GyrA Type IIA topoisom 100.0 3.7E-44 8E-49 464.6 17.5 238 655-894 148-464 (804)
48 cd03365 TOPRIM_TopoIIA TOPRIM_ 100.0 7.9E-45 1.7E-49 374.4 8.9 119 472-592 1-120 (120)
49 PRK05560 DNA gyrase subunit A; 100.0 6.6E-44 1.4E-48 474.2 17.9 248 657-906 148-475 (805)
50 TIGR01063 gyrA DNA gyrase, A s 100.0 3.6E-43 7.9E-48 466.2 18.0 260 657-937 144-479 (800)
51 PRK09631 DNA topoisomerase IV 100.0 3.4E-42 7.4E-47 438.7 22.6 244 657-906 133-446 (635)
52 PRK12758 DNA topoisomerase IV 100.0 8.3E-41 1.8E-45 429.4 21.1 227 657-888 152-447 (869)
53 PRK09630 DNA topoisomerase IV 100.0 1E-35 2.2E-40 361.1 20.0 230 657-888 133-433 (479)
54 PF00817 IMS: impB/mucB/samB f 100.0 2.6E-30 5.6E-35 282.5 12.0 149 1619-1957 1-149 (149)
55 cd03481 TopoIIA_Trans_ScTopoII 99.9 3.6E-24 7.7E-29 234.1 13.3 127 293-454 1-128 (153)
56 PF00204 DNA_gyraseB: DNA gyra 99.9 6.8E-22 1.5E-26 221.7 13.1 120 294-446 1-125 (173)
57 cd00822 TopoII_Trans_DNA_gyras 99.9 1.7E-21 3.7E-26 218.0 13.5 120 293-445 1-123 (172)
58 COG1389 DNA topoisomerase VI, 99.6 2E-16 4.3E-21 190.8 8.8 191 34-288 10-213 (538)
59 KOG2093|consensus 99.6 2.4E-16 5.3E-21 199.8 -1.8 237 1342-1646 158-403 (1016)
60 PRK00095 mutL DNA mismatch rep 99.5 6.1E-14 1.3E-18 184.8 16.8 220 81-347 20-259 (617)
61 TIGR01052 top6b DNA topoisomer 99.5 1.3E-13 2.8E-18 174.3 14.3 190 34-289 2-205 (488)
62 PRK04184 DNA topoisomerase VI 99.4 2.7E-12 5.9E-17 164.0 13.7 189 33-287 9-212 (535)
63 KOG0966|consensus 99.2 6.3E-12 1.4E-16 160.0 5.1 157 1273-1443 563-725 (881)
64 PRK14867 DNA topoisomerase VI 99.2 8E-11 1.7E-15 153.1 12.3 190 34-288 10-210 (659)
65 PF00533 BRCT: BRCA1 C Terminu 99.0 4.6E-10 1E-14 108.8 5.3 74 1342-1426 2-78 (78)
66 TIGR00585 mutl DNA mismatch re 98.9 4.7E-09 1E-13 128.9 12.2 165 81-288 20-192 (312)
67 KOG3226|consensus 98.9 4.7E-10 1E-14 132.2 2.6 93 1340-1443 312-405 (508)
68 smart00292 BRCT breast cancer 98.8 5.3E-09 1.1E-13 100.2 6.9 75 1344-1429 1-80 (80)
69 PF11799 IMS_C: impB/mucB/samB 98.8 1.8E-08 3.8E-13 106.7 10.4 112 2035-2158 1-116 (127)
70 PRK14868 DNA topoisomerase VI 98.8 1.7E-08 3.6E-13 131.8 11.8 188 35-288 21-219 (795)
71 cd00027 BRCT Breast Cancer Sup 98.7 3.2E-08 7E-13 92.6 5.9 69 1348-1427 1-72 (72)
72 PF01751 Toprim: Toprim domain 98.6 2.8E-08 6.2E-13 102.4 4.4 96 473-589 1-97 (100)
73 PF12738 PTCB-BRCT: twin BRCT 98.3 3.8E-07 8.2E-12 86.3 2.3 62 1349-1421 1-63 (63)
74 PF02518 HATPase_c: Histidine 98.1 1E-06 2.2E-11 91.6 2.2 88 82-210 4-93 (111)
75 PRK14083 HSP90 family protein; 97.9 5.5E-05 1.2E-09 100.1 13.5 164 85-288 25-197 (601)
76 PF11798 IMS_HHH: IMS family H 97.8 1E-05 2.2E-10 67.0 2.2 32 1969-2000 1-32 (32)
77 PF13589 HATPase_c_3: Histidin 97.8 1.1E-05 2.3E-10 88.2 2.2 98 85-222 4-105 (137)
78 PRK05218 heat shock protein 90 97.7 0.0011 2.4E-08 88.8 20.3 135 86-251 29-180 (613)
79 COG0326 HtpG Molecular chapero 97.5 0.00062 1.3E-08 88.8 13.5 247 87-373 31-362 (623)
80 PLN03122 Poly [ADP-ribose] pol 97.4 0.00016 3.6E-09 97.5 6.7 87 1343-1441 187-279 (815)
81 KOG2481|consensus 97.4 0.00015 3.2E-09 90.8 4.8 82 1343-1440 325-416 (570)
82 cd00329 TopoII_MutL_Trans MutL 97.3 0.00044 9.4E-09 71.2 6.8 75 320-443 25-106 (107)
83 PLN03123 poly [ADP-ribose] pol 97.2 0.0003 6.6E-09 96.9 5.9 87 1342-1440 390-481 (981)
84 COG5163 NOP7 Protein required 97.0 0.00044 9.6E-09 83.6 3.4 82 1343-1440 348-440 (591)
85 PRK04301 radA DNA repair and r 97.0 0.00027 5.9E-09 87.5 1.7 79 1975-2053 2-87 (317)
86 PTZ00272 heat shock protein 83 96.8 0.002 4.3E-08 86.8 7.6 135 87-251 29-177 (701)
87 COG0323 MutL DNA mismatch repa 96.7 0.0041 8.8E-08 83.6 9.0 165 81-287 21-192 (638)
88 KOG1929|consensus 96.6 0.0016 3.4E-08 87.8 4.7 89 1342-1441 100-190 (811)
89 cd00075 HATPase_c Histidine ki 96.2 0.012 2.6E-07 58.0 6.8 48 84-133 1-50 (103)
90 smart00387 HATPase_c Histidine 96.1 0.011 2.3E-07 59.4 6.1 87 82-209 4-92 (111)
91 PTZ00130 heat shock protein 90 96.0 0.012 2.5E-07 79.8 7.5 134 88-250 93-241 (814)
92 TIGR02236 recomb_radA DNA repa 95.6 0.0075 1.6E-07 74.6 3.4 74 1981-2054 1-81 (310)
93 TIGR01925 spIIAB anti-sigma F 95.2 0.057 1.2E-06 58.6 8.1 48 82-129 38-87 (137)
94 TIGR01386 cztS_silS_copS heavy 95.2 0.033 7.2E-07 71.3 7.1 47 84-133 354-402 (457)
95 PRK04069 serine-protein kinase 94.9 0.071 1.5E-06 60.1 7.9 50 82-131 41-92 (161)
96 PF13581 HATPase_c_2: Histidin 94.9 0.093 2E-06 56.0 8.4 92 83-221 31-124 (125)
97 KOG1978|consensus 94.8 0.039 8.5E-07 72.6 6.3 159 80-285 17-188 (672)
98 PRK10604 sensor protein RstB; 94.6 0.071 1.5E-06 68.9 8.1 44 84-132 320-365 (433)
99 PRK15053 dpiB sensor histidine 94.6 0.047 1E-06 72.2 6.6 52 82-133 431-485 (545)
100 COG2205 KdpD Osmosensitive K+ 94.6 0.027 5.9E-07 75.3 4.2 81 86-205 774-857 (890)
101 PF14520 HHH_5: Helix-hairpin- 94.6 0.028 6E-07 53.3 3.0 50 1982-2031 8-59 (60)
102 TIGR02938 nifL_nitrog nitrogen 94.4 0.048 1E-06 70.1 5.8 51 84-134 388-441 (494)
103 cd01701 PolY_Rev1 DNA polymera 94.3 0.018 4E-07 74.0 1.7 36 1197-1232 1-36 (404)
104 PRK03660 anti-sigma F factor; 94.3 0.15 3.2E-06 56.0 8.5 48 83-130 39-88 (146)
105 TIGR01924 rsbW_low_gc serine-p 94.2 0.14 2.9E-06 57.9 8.1 50 83-132 42-93 (159)
106 COG4191 Signal transduction hi 94.2 0.092 2E-06 68.6 7.4 77 44-133 470-548 (603)
107 KOG1979|consensus 94.2 0.15 3.3E-06 65.8 9.1 158 84-287 28-196 (694)
108 PRK11006 phoR phosphate regulo 94.1 0.086 1.9E-06 67.9 7.1 48 83-133 317-366 (430)
109 PRK10549 signal transduction h 94.0 0.065 1.4E-06 69.2 5.7 46 84-132 353-400 (466)
110 PRK11086 sensory histidine kin 93.9 0.077 1.7E-06 69.7 6.3 50 83-133 433-484 (542)
111 COG3920 Signal transduction hi 93.9 0.14 3E-06 60.9 7.7 51 81-131 120-174 (221)
112 PRK10364 sensor protein ZraS; 93.8 0.1 2.2E-06 67.8 6.9 47 83-132 348-396 (457)
113 PF13438 DUF4113: Domain of un 93.7 0.05 1.1E-06 50.4 2.7 47 2172-2218 2-52 (52)
114 COG3290 CitA Signal transducti 93.6 0.12 2.6E-06 67.1 7.0 50 83-132 427-478 (537)
115 KOG3548|consensus 93.6 0.055 1.2E-06 72.3 3.8 88 1344-1443 924-1039(1176)
116 PRK09303 adaptive-response sen 93.4 0.091 2E-06 66.9 5.4 48 83-133 272-322 (380)
117 COG3850 NarQ Signal transducti 93.3 0.13 2.8E-06 66.5 6.4 52 84-140 482-535 (574)
118 PF11731 Cdd1: Pathogenicity l 93.0 0.054 1.2E-06 55.7 2.0 45 1980-2024 13-57 (93)
119 TIGR03785 marine_sort_HK prote 93.0 0.14 3.1E-06 70.4 6.6 48 83-133 597-646 (703)
120 PRK09835 sensor kinase CusS; P 92.9 0.16 3.6E-06 65.7 6.9 47 83-132 375-423 (482)
121 PRK10755 sensor protein BasS/P 92.5 0.18 3.9E-06 63.1 6.2 47 84-133 248-296 (356)
122 KOG1929|consensus 92.4 0.13 2.7E-06 70.3 4.8 88 1342-1440 490-578 (811)
123 PRK10337 sensor protein QseC; 92.3 0.19 4.2E-06 64.7 6.2 44 84-132 353-396 (449)
124 PRK11100 sensory histidine kin 92.3 0.2 4.3E-06 64.6 6.2 46 84-132 369-416 (475)
125 TIGR02966 phoR_proteo phosphat 92.0 0.29 6.4E-06 59.5 7.1 48 83-133 229-278 (333)
126 TIGR02916 PEP_his_kin putative 91.8 0.29 6.4E-06 67.1 7.4 47 83-132 579-627 (679)
127 PRK11073 glnL nitrogen regulat 90.9 0.42 9.1E-06 59.4 6.9 49 83-133 237-297 (348)
128 PRK11360 sensory histidine kin 90.6 0.47 1E-05 62.6 7.4 46 84-132 501-549 (607)
129 PRK09467 envZ osmolarity senso 90.5 0.28 6E-06 62.9 5.0 44 84-132 332-377 (435)
130 PRK10815 sensor protein PhoQ; 90.4 0.32 6.8E-06 64.2 5.5 44 84-132 379-424 (485)
131 PRK15347 two component system 90.2 0.33 7.2E-06 68.5 5.8 45 84-132 514-560 (921)
132 PRK09470 cpxA two-component se 90.2 0.24 5.1E-06 63.8 4.0 44 84-132 354-399 (461)
133 COG4585 Signal transduction hi 90.2 0.41 8.9E-06 60.7 6.0 49 81-133 277-327 (365)
134 PRK06063 DNA polymerase III su 90.1 0.43 9.3E-06 59.7 5.9 72 1344-1426 231-305 (313)
135 PRK14350 ligA NAD-dependent DN 90.1 0.46 1E-05 64.6 6.6 73 1344-1426 592-665 (669)
136 PRK13837 two-component VirA-li 90.0 0.39 8.4E-06 67.5 6.2 47 83-132 560-623 (828)
137 COG0642 BaeS Signal transducti 89.4 0.35 7.6E-06 57.8 4.3 47 82-132 227-275 (336)
138 PRK11466 hybrid sensory histid 89.3 0.44 9.6E-06 67.3 5.8 47 83-133 561-609 (914)
139 PRK10490 sensor protein KdpD; 89.2 0.47 1E-05 67.2 5.9 47 83-132 778-826 (895)
140 KOG3524|consensus 89.1 0.81 1.8E-05 60.4 7.4 78 1340-1429 113-190 (850)
141 PRK12766 50S ribosomal protein 88.7 0.49 1.1E-05 56.1 4.7 56 1980-2035 4-61 (232)
142 PRK07956 ligA NAD-dependent DN 88.2 0.73 1.6E-05 62.9 6.5 75 1344-1428 589-664 (665)
143 KOG1977|consensus 88.2 0.28 6E-06 64.2 2.4 45 83-132 21-65 (1142)
144 PRK14351 ligA NAD-dependent DN 87.6 0.84 1.8E-05 62.5 6.6 76 1343-1428 607-684 (689)
145 KOG0966|consensus 87.1 0.58 1.3E-05 62.7 4.4 68 1371-1438 800-881 (881)
146 KOG2043|consensus 86.8 0.75 1.6E-05 64.1 5.4 80 1349-1442 660-741 (896)
147 PRK10618 phosphotransfer inter 86.0 1.2 2.7E-05 62.9 7.0 47 83-133 565-616 (894)
148 PF08827 DUF1805: Domain of un 85.8 0.48 1E-05 45.0 1.9 28 1668-1695 31-58 (59)
149 COG4192 Signal transduction hi 85.4 1 2.2E-05 57.2 5.0 49 83-133 564-615 (673)
150 COG2172 RsbW Anti-sigma regula 84.9 4.3 9.3E-05 45.6 9.2 47 84-130 41-90 (146)
151 PRK11644 sensory histidine kin 84.8 1.3 2.9E-05 58.7 6.2 45 83-131 410-456 (495)
152 PRK10600 nitrate/nitrite senso 84.6 1.5 3.3E-05 58.8 6.8 46 83-132 469-516 (569)
153 PRK13560 hypothetical protein; 84.5 1.4 3E-05 61.0 6.4 48 84-131 712-762 (807)
154 TIGR02956 TMAO_torS TMAO reduc 84.3 1 2.3E-05 64.0 5.2 47 82-132 578-627 (968)
155 COG0272 Lig NAD-dependent DNA 84.1 2.4 5.2E-05 57.0 7.9 73 1344-1426 593-666 (667)
156 PRK10841 hybrid sensory kinase 84.1 1.2 2.5E-05 63.6 5.5 46 83-132 562-609 (924)
157 TIGR00575 dnlj DNA ligase, NAD 83.1 1.8 3.9E-05 59.2 6.4 67 1344-1420 583-650 (652)
158 PRK13557 histidine kinase; Pro 83.0 1.6 3.6E-05 57.2 5.9 48 83-133 277-341 (540)
159 PRK11091 aerobic respiration c 83.0 1 2.2E-05 62.8 4.1 47 83-133 398-447 (779)
160 PRK06195 DNA polymerase III su 82.9 1.8 3.9E-05 54.1 5.9 74 1344-1427 219-307 (309)
161 PRK09959 hybrid sensory histid 81.6 2.2 4.8E-05 62.4 6.9 47 83-133 828-881 (1197)
162 COG3851 UhpB Signal transducti 80.5 2.5 5.3E-05 52.7 5.5 45 83-131 410-456 (497)
163 PRK11107 hybrid sensory histid 79.9 3.7 8.1E-05 58.1 8.1 45 84-132 409-460 (919)
164 PF10391 DNA_pol_lambd_f: Fing 78.6 1.3 2.8E-05 41.3 1.9 27 1982-2008 5-31 (52)
165 PF04994 TfoX_C: TfoX C-termin 78.5 1.2 2.5E-05 45.2 1.8 32 1980-2011 4-35 (81)
166 PRK02362 ski2-like helicase; P 78.3 1.7 3.8E-05 60.4 3.9 55 1979-2033 652-706 (737)
167 PF03118 RNA_pol_A_CTD: Bacter 77.5 2.7 5.8E-05 41.1 3.8 46 1973-2019 6-51 (66)
168 COG5002 VicK Signal transducti 77.2 1.3 2.8E-05 54.9 2.0 114 83-260 342-457 (459)
169 COG3743 Uncharacterized conser 77.1 2 4.4E-05 46.9 3.1 38 1980-2017 68-105 (133)
170 PRK13559 hypothetical protein; 76.5 6.4 0.00014 49.4 7.9 48 83-130 267-318 (361)
171 COG5275 BRCT domain type II [G 76.2 5.3 0.00011 46.6 6.2 75 1342-1426 153-229 (276)
172 COG3852 NtrB Signal transducti 75.5 3.8 8.1E-05 50.6 5.1 51 83-133 241-304 (363)
173 PF14229 DUF4332: Domain of un 73.7 2.8 6.1E-05 45.6 3.2 53 1967-2019 41-93 (122)
174 cd00188 TOPRIM Topoisomerase-p 71.9 4.3 9.4E-05 38.8 3.8 72 473-576 2-73 (83)
175 PRK10935 nitrate/nitrite senso 70.4 7.8 0.00017 51.7 7.0 45 84-132 472-519 (565)
176 PF14501 HATPase_c_5: GHKL dom 69.0 14 0.0003 38.4 7.0 41 84-124 6-48 (100)
177 COG5000 NtrY Signal transducti 68.3 6.9 0.00015 52.1 5.4 51 82-132 599-655 (712)
178 COG2251 Predicted nuclease (Re 67.8 6.4 0.00014 50.7 4.9 70 1966-2035 212-283 (474)
179 PRK00254 ski2-like helicase; P 65.3 5.1 0.00011 55.8 3.8 54 1978-2031 644-699 (720)
180 KOG0019|consensus 64.7 5.8 0.00013 52.5 3.8 132 87-248 61-203 (656)
181 PF11799 IMS_C: impB/mucB/samB 64.5 7.2 0.00016 41.4 3.9 87 2122-2208 23-122 (127)
182 PRK10547 chemotaxis protein Ch 64.2 10 0.00022 52.3 6.1 44 89-132 391-445 (670)
183 KOG0323|consensus 64.0 3.7 8E-05 55.4 1.9 93 1344-1443 440-534 (635)
184 PRK01172 ski2-like helicase; P 62.2 6.8 0.00015 54.1 4.0 53 1978-2030 611-665 (674)
185 KOG4362|consensus 61.4 8.6 0.00019 52.1 4.5 81 1347-1442 477-565 (684)
186 PF12826 HHH_2: Helix-hairpin- 59.4 6.7 0.00015 38.0 2.3 46 1984-2031 8-56 (64)
187 PRK07758 hypothetical protein; 57.1 12 0.00025 39.2 3.6 47 1983-2029 38-86 (95)
188 COG4564 Signal transduction hi 54.2 22 0.00048 44.3 5.9 46 82-131 358-405 (459)
189 PF14229 DUF4332: Domain of un 53.6 15 0.00032 40.2 4.0 35 1985-2019 1-40 (122)
190 PF02961 BAF: Barrier to autoi 50.5 8.8 0.00019 39.5 1.6 32 1976-2007 16-47 (89)
191 KOG0020|consensus 50.2 19 0.00041 46.5 4.7 136 87-248 99-249 (785)
192 PRK03348 DNA polymerase IV; Pr 50.2 66 0.0014 42.7 9.9 82 2122-2204 257-346 (454)
193 TIGR03491 RecB family nuclease 49.7 13 0.00027 49.3 3.3 60 1972-2031 200-261 (457)
194 PRK03609 umuC DNA polymerase V 49.1 46 0.001 43.6 8.2 89 2122-2210 256-358 (422)
195 KOG0787|consensus 49.1 28 0.00061 44.3 5.8 107 15-132 200-316 (414)
196 PRK03103 DNA polymerase IV; Re 48.2 46 0.001 43.3 8.0 89 2122-2211 259-358 (409)
197 cd00424 PolY Y-family of DNA p 47.2 44 0.00096 42.4 7.5 78 2122-2200 250-343 (343)
198 PRK14133 DNA polymerase IV; Pr 47.1 46 0.001 42.4 7.6 86 2122-2208 249-342 (347)
199 smart00611 SEC63 Domain of unk 45.7 25 0.00055 43.8 4.9 62 1978-2039 150-213 (312)
200 KOG4362|consensus 45.4 20 0.00043 48.8 4.1 82 1341-1432 583-681 (684)
201 PF00986 DNA_gyraseB_C: DNA gy 43.1 11 0.00023 37.0 0.8 11 623-633 4-14 (65)
202 smart00483 POLXc DNA polymeras 42.7 17 0.00037 46.2 2.8 29 1981-2009 91-119 (334)
203 PRK14667 uvrC excinuclease ABC 42.6 24 0.00051 47.9 4.2 53 1978-2032 513-567 (567)
204 PF02889 Sec63: Sec63 Brl doma 42.1 22 0.00047 44.3 3.6 61 1978-2038 147-209 (314)
205 PLN03187 meiotic recombination 41.6 17 0.00036 46.5 2.4 56 1978-2033 28-87 (344)
206 TIGR00596 rad1 DNA repair prot 41.6 21 0.00045 50.3 3.6 51 1982-2033 760-811 (814)
207 PTZ00035 Rad51 protein; Provis 41.3 16 0.00035 46.4 2.3 55 1979-2033 21-79 (337)
208 cd03586 PolY_Pol_IV_kappa DNA 41.2 64 0.0014 40.6 7.6 80 2122-2202 247-334 (334)
209 COG3275 LytS Putative regulato 41.0 40 0.00087 44.2 5.5 46 87-132 460-508 (557)
210 COG3377 Uncharacterized conser 38.6 15 0.00033 37.8 1.1 26 1670-1695 69-94 (95)
211 TIGR02239 recomb_RAD51 DNA rep 36.6 29 0.00064 43.8 3.5 35 1986-2020 8-42 (316)
212 PRK01810 DNA polymerase IV; Va 36.3 81 0.0018 41.1 7.5 83 2122-2205 257-347 (407)
213 COG0643 CheA Chemotaxis protei 36.2 36 0.00079 47.4 4.5 44 91-134 440-494 (716)
214 TIGR02238 recomb_DMC1 meiotic 35.1 33 0.00071 43.4 3.6 50 1982-2031 2-55 (313)
215 PRK05560 DNA gyrase subunit A; 34.9 92 0.002 44.4 8.1 89 790-884 354-455 (805)
216 PRK02794 DNA polymerase IV; Pr 33.7 95 0.0021 40.7 7.6 85 2122-2207 285-377 (419)
217 PRK07956 ligA NAD-dependent DN 31.6 42 0.00091 46.6 4.0 49 1983-2031 449-500 (665)
218 PRK08609 hypothetical protein; 31.2 30 0.00064 47.2 2.5 41 1983-2023 92-136 (570)
219 PLN03186 DNA repair protein RA 31.0 28 0.00061 44.5 2.1 42 1979-2020 26-69 (342)
220 cd00141 NT_POLXc Nucleotidyltr 30.9 30 0.00065 43.5 2.3 28 1982-2009 88-115 (307)
221 PRK03352 DNA polymerase IV; Va 30.0 1.1E+02 0.0024 39.0 7.1 82 2122-2204 255-344 (346)
222 TIGR01061 parC_Gpos DNA topois 29.4 1.2E+02 0.0026 42.8 7.8 70 807-882 379-450 (738)
223 PRK03858 DNA polymerase IV; Va 28.2 1.4E+02 0.003 38.8 7.7 90 2122-2211 250-349 (396)
224 KOG3524|consensus 27.9 34 0.00074 46.3 2.1 88 1343-1442 208-296 (850)
225 PRK14670 uvrC excinuclease ABC 27.8 55 0.0012 44.6 4.0 53 1978-2032 513-568 (574)
226 PRK00116 ruvA Holliday junctio 27.2 44 0.00095 39.3 2.6 55 1981-2035 75-133 (192)
227 PRK13711 conjugal transfer pro 26.4 31 0.00068 34.9 1.1 19 671-689 27-47 (113)
228 PRK12278 50S ribosomal protein 26.3 49 0.0011 39.8 2.8 37 1980-2016 159-195 (221)
229 TIGR00575 dnlj DNA ligase, NAD 26.2 60 0.0013 45.0 4.0 49 1983-2031 436-487 (652)
230 PRK10917 ATP-dependent DNA hel 26.2 38 0.00082 47.2 2.2 30 1979-2008 9-38 (681)
231 PRK04017 hypothetical protein; 26.0 50 0.0011 36.8 2.6 29 549-577 64-92 (132)
232 KOG1924|consensus 24.7 96 0.0021 42.7 5.2 43 1677-1720 239-281 (1102)
233 cd01700 PolY_Pol_V_umuC umuC s 24.7 1.9E+02 0.004 36.9 7.8 80 2122-2201 253-344 (344)
234 PRK14666 uvrC excinuclease ABC 24.6 58 0.0012 45.1 3.3 50 1980-2031 638-690 (694)
235 COG0188 GyrA Type IIA topoisom 24.5 4E+02 0.0086 38.1 11.2 116 783-906 355-479 (804)
236 cd01028 TOPRIM_TopoIA TOPRIM_T 23.3 52 0.0011 36.7 2.2 26 550-575 91-116 (142)
237 COG2972 Predicted signal trans 23.3 98 0.0021 41.1 5.1 48 84-131 351-401 (456)
238 PRK14671 uvrC excinuclease ABC 22.7 79 0.0017 43.6 4.1 50 1979-2030 569-619 (621)
239 PRK14669 uvrC excinuclease ABC 22.4 88 0.0019 43.2 4.4 54 1978-2033 551-605 (624)
240 PF12092 DUF3568: Protein of u 22.1 2E+02 0.0043 32.2 6.3 53 672-725 23-84 (131)
241 COG1200 RecG RecG-like helicas 21.8 49 0.0011 45.3 1.8 33 1979-2011 10-43 (677)
242 TIGR01063 gyrA DNA gyrase, A s 21.0 2.1E+02 0.0046 40.9 7.8 109 790-906 351-472 (800)
243 COG2865 Predicted transcriptio 20.9 1.3E+02 0.0028 40.1 5.3 45 86-133 273-317 (467)
244 PRK14973 DNA topoisomerase I; 20.5 1.3E+02 0.0027 43.6 5.5 52 1981-2032 879-932 (936)
245 PRK12311 rpsB 30S ribosomal pr 20.4 60 0.0013 41.3 2.1 35 1981-2015 265-299 (326)
246 TIGR01954 nusA_Cterm_rpt trans 20.4 97 0.0021 28.0 2.9 33 1987-2019 1-33 (50)
247 TIGR02027 rpoA DNA-directed RN 20.2 72 0.0016 40.1 2.8 55 1976-2031 232-288 (297)
No 1
>PLN03237 DNA topoisomerase 2; Provisional
Probab=100.00 E-value=2.5e-203 Score=1995.97 Aligned_cols=818 Identities=54% Similarity=0.891 Sum_probs=707.4
Q ss_pred CCCCCChhhhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCC
Q psy7164 26 PANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKM 105 (2307)
Q Consensus 26 ~~~~~~~~~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~ 105 (2307)
..+.+++|++||+|+++||||+||||||||++..++.|||| ++++|++++|+|+||||||||||||||+||++|+|+|
T Consensus 22 ~~~~~~~~~~Yqkls~lEhVr~RP~mYIGSt~~~~~~~wv~--~~~~m~~~~v~~vpGL~kifdEIldNAvDe~~r~g~~ 99 (1465)
T PLN03237 22 SSGGKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQTLWVY--ETDKMVQRSVTYVPGLYKIFDEILVNAADNKQRDPKM 99 (1465)
T ss_pred ccCCCcHHHhhhccccchHHhcCCCCEeCCCCcccceeeee--ccccceeeeccccchhhhhHHHHhhhhHhHHhhcCCC
Confidence 45689999999999999999999999999999999999999 4689999999999999999999999999999999999
Q ss_pred CeEEEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCccc
Q psy7164 106 NCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDK 185 (2307)
Q Consensus 106 ~~I~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk 185 (2307)
+.|+|+|+.++|+|+|+||||||||++|+++|+|+||+|||+|||| ||||+++|+
T Consensus 100 ~~I~V~I~~~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAG-------------------------gkFdd~~yK 154 (1465)
T PLN03237 100 DSLRVVIDVEQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTS-------------------------SNYDDNEKK 154 (1465)
T ss_pred CEEEEEEEcCCCEEEEEecCccccCCCCCCCCCccceEEEEeeecc-------------------------ccCCCCcce
Confidence 9999999988899999999999999999999999999999999999 999999999
Q ss_pred cccCCCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCCC-CCCCcEEEEEeCcccccccccCHHHH
Q psy7164 186 VTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGS-KDDFTKITFTPDLTKFKMTSLDKDMV 264 (2307)
Q Consensus 186 ~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~~-~~~GT~VtF~PD~~iF~~~~f~~d~l 264 (2307)
+||||||||+|||||||+||+|+|++.++|+.|+|.|++||.....+.++.+. +++||+|+|+||++||++..|++|+|
T Consensus 155 vSGGlhGVGasvvNaLS~~f~Vev~Dg~~gk~y~Q~f~~nmG~~~~p~i~~~~~~~~GT~VtF~PD~eiF~~~~fd~D~l 234 (1465)
T PLN03237 155 TTGGRNGYGAKLTNIFSTEFVIETADGKRQKKYKQVFSNNMGKKSEPVITKCKKSENWTKVTFKPDLAKFNMTHLEDDVV 234 (1465)
T ss_pred eeccccccCccccccccCeeEEEEEECCCCeEEEEEEeCCCCccCCceeccCCCCCCceEEEEEECHHHhCCceEcHHHH
Confidence 99999999999999999999999998778999999999988877777665543 47999999999999999999999999
Q ss_pred HHHHHHHHHhh-ccCCCcEEEeccccCCccchHHHHHHHhccCCCC-CCCeEEEEEecCCeeEEEEeecCCCceEEEeeC
Q psy7164 265 DLITRRAYDAA-ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDED-GDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVN 342 (2307)
Q Consensus 265 ~~l~~Rl~dlA-~LnpGLkI~lnder~~~~G~~dYV~~~~~~~~~~-~~~~~ii~e~~~~~~EVAl~~s~~~y~~~SFVN 342 (2307)
.+|.+|++|+| |||+||+|+|+|+|...+||++||++|.+..+.. ..++.++++..+.+|||||+|++++++++||||
T Consensus 235 ~~~~rRlrdLAa~LnkGlkI~LndeR~~~~G~kdYV~~yl~~~~k~k~~~~~~i~e~~~~~~EVAl~~sd~~~~~~SFVN 314 (1465)
T PLN03237 235 ALMKKRVVDIAGCLGKTVKVELNGKRIPVKSFSDYVDLYLESANKSRPENLPRIYEKVNDRWEVCVSLSEGQFQQVSFVN 314 (1465)
T ss_pred HHHHHHHHHHHhccCCCcEEEEEecCCCCCCHHHHHHHHhhcccccCCCCCCccEecCCCeEEEEEEEeCCCceEEEEEC
Confidence 99999999999 9999999999999988889999999876321111 111224466678899999999987788999999
Q ss_pred CccCCCCcchhhHHHHHHHHHHHHHHHHhccccccceeeccccccccccchhhhhcccccccccccccccCChHhHhcce
Q psy7164 343 SIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHI 422 (2307)
Q Consensus 343 nI~T~eGGTHvdgfr~aLtr~i~~~~kkk~k~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~dvreg~~~vk~~dIre~L 422 (2307)
||+|++|||||+||+++|+++|++|+++|++ ...|+++|||+||
T Consensus 315 nI~T~~GGTHv~g~~~aIt~~l~~~~~kK~k------------------------------------~~~l~~~DIregL 358 (1465)
T PLN03237 315 SIATIKGGTHVDYVTNQIANHVMEAVNKKNK------------------------------------NANIKAHNVKNHL 358 (1465)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHHHHHhccC------------------------------------CCCCCHHHHHhCc
Confidence 9999999999999999999999999976543 1357899999999
Q ss_pred EEEEEeecCCCcccchhhhhhhccccccccc--------------------------------------------ccccc
Q psy7164 423 WIFINCLIVNPTFDSQTKENMTLQKGSFGST--------------------------------------------CVPKL 458 (2307)
Q Consensus 423 ~~~Vsvki~nP~FegQTKekL~~~~~~~~~k--------------------------------------------~lpKL 458 (2307)
++||||+|+||+|+||||++|++....|+++ .+|||
T Consensus 359 ~a~IsvkI~nP~FesQTKekLtn~~~~f~s~l~l~~~flk~~~~~~Ivekil~~A~ak~arel~k~k~~k~~~~~~ipKL 438 (1465)
T PLN03237 359 WVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKKVMKSGIVENLLSWADFKQSKELKKTDGAKTTRVTGIPKL 438 (1465)
T ss_pred EEEEEEeCCCCccCCcccCcccChHHHHHHHhccCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCccc
Confidence 9999999999999999999998742222110 17899
Q ss_pred ccccccCCCCCCCcEEEEEecCccchhcccCcccccccceeeccCCcccchhhccchHHHhhcHHHHHHHHHhccccCCC
Q psy7164 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKK 538 (2307)
Q Consensus 459 ~Dc~~a~tk~~~~ceLfIvEGDSA~~~a~sGsak~gRD~qaIlPLRGKiLNV~ka~~~ki~~N~EI~~Li~aLGlg~~~~ 538 (2307)
+||+.||++++++|||||||||||||||++|.++.+|++|||||||||||||++++.+||++|+||++||+|||||++++
T Consensus 439 ~Dc~~aG~kd~~~ceLfLvEGDSAgGsAk~GR~vvdR~~qaIlPLRGKILNV~kAs~~kil~N~EI~~ii~aLGlgig~~ 518 (1465)
T PLN03237 439 EDANEAGGKNSEKCTLILTEGDSAKALAVAGLSVVGRNYYGVFPLRGKLLNVREASHKQIMNNAEIENIKQILGLQHGKQ 518 (1465)
T ss_pred ccccccccCCccccEEEEEecCcCCchhhhhhcccCccceeeeccCCceehhccCcHHhhhcchHHHHHHHHhCCCcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCcCCCCCCCCCcEEecccCCCCCCchhHHHHHHHHHhhhhhhc-CCcEEEecCcEEEEEe-CCeEEEEeChHHHHHHH
Q psy7164 539 YTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR-LPFLEEFITPIIKATK-AREELSFYSLPEFEEWK 616 (2307)
Q Consensus 539 y~~~~d~~~LRYgkIiImTDaDvDG~HI~~LLltff~r~~p~Li~-~G~vy~~~tPL~kv~~-gk~~~~fys~~e~~~~~ 616 (2307)
| ||+++||||||||||||||||+|||||||||||||||+||+ .||||+|+||||||++ |++++||||++||++|+
T Consensus 519 y---~d~~~LRYgkIiIMTDADvDGsHIrgLLLtFF~r~~P~Li~~~Gfl~~~~tPL~Kv~~~gk~~~~fys~~E~e~w~ 595 (1465)
T PLN03237 519 Y---ESVKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSLLKVPSFLVEFITPIVKATRRGKKVLSFYSMPEYEEWK 595 (1465)
T ss_pred c---CcccccccCcEEEEeCCCCCccHHHHHHHHHHHHhhHHhcccCCEEEEecCCeEEEEECCCeeEeecCHHHHHHHH
Confidence 7 68999999999999999999999999999999999999999 8999999999999999 99999999999999999
Q ss_pred HHhcC-CCccCcEEeccc----------ccCc------------------------------------------------
Q psy7164 617 EETTN-WHTYKIKYYKVV----------YVTG------------------------------------------------ 637 (2307)
Q Consensus 617 ~~~~~-~~~~~ikryKGL----------yf~~------------------------------------------------ 637 (2307)
+++.+ .++|+||||||| ||+.
T Consensus 596 ~~~~~~~~~~~IkyYKGLGe~~~~e~keyf~~~~~h~~~f~~~~~~~~~~i~laF~k~~~d~RK~Wl~~~~~~~~ld~~~ 675 (1465)
T PLN03237 596 ESLGGNATGWSIKYYKGLGTSTAKEGKEYFKNLGKHKKDFVWEDEQDGDAIELAFSKKKIEARKNWLRQYEPGTHLDQTQ 675 (1465)
T ss_pred HHhcccCCceeeEeeccCCCCCHHHHHHHHHhHHhceEEEEECCCCcHHHHHHHhCCccHHHHHHHHHhCCCCccccCCC
Confidence 98753 468999999999 8870
Q ss_pred ------------eeeeecCC------------------------------------------------c-----------
Q psy7164 638 ------------VLLFKMNL------------------------------------------------H----------- 646 (2307)
Q Consensus 638 ------------l~~f~~~~------------------------------------------------H----------- 646 (2307)
||+|+|.+ |
T Consensus 676 ~~i~~~dfinkeli~ySm~~i~RAIP~v~DGLKPvQRkILya~~k~~~~~~~KvAqlvG~V~e~~~YHHGd~Sly~tiV~ 755 (1465)
T PLN03237 676 KDVKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFVKEAKVAQLSGYVSEHSAYHHGEQSLASTIIG 755 (1465)
T ss_pred CcccHHHHHHHHHHHHHHHHHhccCCchhcCCCchHhHHHHHHHhcCCccccchhhhHHHHhhhccCCCcHHHHHHHHHH
Confidence 55553322 3
Q ss_pred ----ccCC--------------------Cccc---cc-------------------------CCCCCCccccCCCCeeee
Q psy7164 647 ----KVTS--------------------DSIS---MF-------------------------IGRIEPEWYIPIIPMVLV 674 (2307)
Q Consensus 647 ----fVGS--------------------D~As---iF-------------------------g~~iEP~vlppiiP~LLV 674 (2307)
|||| |+|| || |+.+||+||||+||||||
T Consensus 756 MAQdfvGsnnipLl~p~GnFGSR~~gG~daAA~RYietrLs~ia~~lf~~~Dd~~l~~~n~Dg~~iEP~~y~piiP~lLV 835 (1465)
T PLN03237 756 MAQDFVGSNNINLLLPNGQFGTRLQGGKDHASARYIFTRLSPITRFLFPKDDDILLDYLNEDGQSIEPTWYMPIIPTVLV 835 (1465)
T ss_pred HhhccccccccceeecCCCCCCCCCCCCcccccccceechhHHHHHHhccCCccccCccCCCCcccCCceecCCCcceee
Confidence 9888 6777 22 999999999999999999
Q ss_pred cCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCCCCCcccCCCCCcEEEEe----cCcEEEEEEEEEEEcCCeEEEEec
Q psy7164 675 NGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNFKGEIDYC----GDSRFVVNGEIAILDDDKLEITEL 750 (2307)
Q Consensus 675 NGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~~~l~P~ykGf~G~I~~t----g~g~~~vrG~~~~~~~~~IvITEL 750 (2307)
|||+|||||||||||||||+|||+||+++|+|+++.+|.|||+||+|+|+.. |+|+|+++|+++++++++|+||||
T Consensus 836 NGa~GIatG~sT~IPphNp~eVi~~i~~~i~~e~~~~~~P~~~gf~G~I~~~~~t~g~g~~~~rG~~~~~~~~~i~ITEl 915 (1465)
T PLN03237 836 NGAEGIGTGWSTFIPNYNPRDIVANIRRLLNGESMEPMHPWYRGFKGTIEKTASKEGGCTYTITGLYEEVDETTLRITEL 915 (1465)
T ss_pred cCCcceecccccCCCCCCHHHHHHHHHHHhcCCCcCCCCCeecCCCceEeEhhhcCCCceEEEEEEEEEecCCeEEEEeC
Confidence 9999999999999999999999999999999999999999999999988664 999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHhc---CCCc---Cc---cc-----------------------------------------cCCC
Q psy7164 751 QVGKWTTDYKDTLDTLLH---GAEK---DE---VH-----------------------------------------PGPG 780 (2307)
Q Consensus 751 Py~v~t~~~~e~La~Lv~---~~~~---~~---y~-----------------------------------------~t~~ 780 (2307)
||++||++|++.|+.|++ ++++ .+ |+ +++.
T Consensus 916 P~~~~t~~y~~~le~i~~~~~~~k~~~I~d~~d~s~~~~vr~vI~lk~~~~~~~~~~~L~k~~kL~~s~~~~nm~l~d~~ 995 (1465)
T PLN03237 916 PIRRWTDDYKEFLESLKTDNNKNKDPFIKDVKAYNDDTTVHFEVILSEENMLAAKQEGLLKKFKLTTTISTSNMHLFDSK 995 (1465)
T ss_pred CCeecchHHHHHHHHHHHHHhccCcCceeechhccCCceEEEEEEeccchhHHHHHHHHHHhhcCcceeceeEEEEEcCC
Confidence 999999888776666653 3321 11 11 1121
Q ss_pred -C---CCCHHHHHHHHHHHHHHHHHHHHHh-----------hhh-----------------------HHHhhcc-cCCCc
Q psy7164 781 -R---KSHPRPIAPKSYKIDDDSEEEEIEE-----------VFH-----------------------DNELAKP-QKTGP 821 (2307)
Q Consensus 781 -~---~~sl~eIL~eF~~~Rl~~y~rr~e~-----------l~n-----------------------i~~li~~-~~~d~ 821 (2307)
+ ++++.+||++||+||+++|++|.++ +.| +.+|.+. |.+.+
T Consensus 996 G~i~k~~~~~~Il~~F~~~Rl~~Y~kRk~~~~~~~~~el~k~~~k~~fI~~vi~g~i~i~~k~k~~l~~~L~~~gf~~~~ 1075 (1465)
T PLN03237 996 GVIKKYDTPEQILEEFFHLRLEYYEKRKEVLLKNLEFELLKLENKVRFILAVVDGEIIVNNRKKADLVEELRQKGFTPFP 1075 (1465)
T ss_pred CCcceeCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEccCCHHHHHHHHHHcCCCccc
Confidence 1 5999999999999999999988766 222 2333333 44433
Q ss_pred hHHHHHHHhhccccccccccCCC------CCCChhhHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHccCchhhHH
Q psy7164 822 QLERQERQAAEGEDDEAGSQTQE------EEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWS 895 (2307)
Q Consensus 822 ~~a~~~~~~~~~~~~~~~~~~~~------~~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~el~~ei~~L~~~s~~~lw~ 895 (2307)
...+..........+..+...+. ......+|||||+||||+||.|++++|++|++++++|++.|++++|++||+
T Consensus 1076 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydYLL~M~i~slT~E~~~kL~~~~~~k~~el~~l~~~t~~~lW~ 1155 (1465)
T PLN03237 1076 KKAKSVEAAVAGATDDAAEEEEEIDVSSSSGVRGSDYDYLLSMAIGTLTLEKVQELCADRDKLNIEVEDLKKTTPKSLWL 1155 (1465)
T ss_pred hhhcccccccccccccccccccccccccccccccccchHHhcCcHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 32221110000000000000000 001124799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCC
Q psy7164 896 DDLDALREKDKIHP 909 (2307)
Q Consensus 896 ~DL~el~k~l~k~~ 909 (2307)
+||++|+++|++..
T Consensus 1156 ~DLd~f~~~~~~~~ 1169 (1465)
T PLN03237 1156 KDLDALEKELDKLD 1169 (1465)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
No 2
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=100.00 E-value=8.4e-200 Score=1976.70 Aligned_cols=818 Identities=52% Similarity=0.877 Sum_probs=710.5
Q ss_pred CCCChhhhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccC---CC
Q psy7164 28 NKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRD---PK 104 (2307)
Q Consensus 28 ~~~~~~~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~---g~ 104 (2307)
+.+++|++||+|+++||||+||||||||++..++.|||||.++++|++++|+|+||||||||||||||+||++|+ |+
T Consensus 2 ~~~~~~~~yq~L~~lEhVr~RP~mYIGS~~~~~~~~wv~~~~~~~m~~~~v~~vpGL~ki~dEIldNAvDe~~r~~~~g~ 81 (1388)
T PTZ00108 2 KNKTVEERYQKKTQIEHILLRPDTYIGSIETQTEDMWVYDEEKNRMVYKTITYVPGLYKIFDEILVNAADNKARDKGGHR 81 (1388)
T ss_pred CCCChHHhhhcccchhHHhcCCCceeCCCCccccceeeecccccccccccccccchhhhhHHHHhhhhhhhhcccCCCCC
Confidence 568999999999999999999999999999999999999999999999999999999999999999999999986 99
Q ss_pred CCeEEEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCcc
Q psy7164 105 MNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEED 184 (2307)
Q Consensus 105 ~~~I~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~y 184 (2307)
|+.|+|+|+.+.|+|+|+||||||||++|+++|+|+||+|||+|||| ||||+++|
T Consensus 82 ~~~I~V~i~~d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aG-------------------------gkfdd~~y 136 (1388)
T PTZ00108 82 MTYIKVTIDEENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTS-------------------------SNYDDTEK 136 (1388)
T ss_pred ccEEEEEEeccCCeEEEEecCCcccCCCCCCCCCccceEEEEEeecc-------------------------ccCCCCce
Confidence 99999999997799999999999999999999999999999999999 99999999
Q ss_pred ccccCCCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCCCC-CCCcEEEEEeCcccccccccCHHH
Q psy7164 185 KVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDM 263 (2307)
Q Consensus 185 k~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~~~-~~GT~VtF~PD~~iF~~~~f~~d~ 263 (2307)
++||||||||+|||||||++|+|+|++.+.|+.|.|.|++||.....|+++.++. ++||+|+|+||++||++..|++++
T Consensus 137 KvSGGlhGVGasvvNalS~~f~Vev~r~~~gk~y~q~f~~Gm~~~~~p~i~~~~~~~~GT~VtF~PD~~iF~~~~fd~d~ 216 (1388)
T PTZ00108 137 RVTGGRNGFGAKLTNIFSTKFTVECVDSKSGKKFKMTWTDNMSKKSEPRITSYDGKKDYTKVTFYPDYAKFGMTEFDDDM 216 (1388)
T ss_pred eeecccccCCccccccccceEEEEEEECCCCCEEEEEecCCCcCCCCCccCCCCCCCCceEEEEEeCHHHcCCCccChHH
Confidence 9999999999999999999999999986569999999999997777777766544 799999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCcEEEeccccCCccchHHHHHHHhccCCCCCCCeE-EEEEecCCeeEEEEeecCCCceEEEeeC
Q psy7164 264 VDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVK-IIYENVNPRWEVAIAPSDRGFQQVSFVN 342 (2307)
Q Consensus 264 l~~l~~Rl~dlA~LnpGLkI~lnder~~~~G~~dYV~~~~~~~~~~~~~~~-ii~e~~~~~~EVAl~~s~~~y~~~SFVN 342 (2307)
+++|.+|++++|||||||+|+|+|+|+...+|.+|+++|.........++. +.++..+.+|||||+|++.+++++||||
T Consensus 217 ~~ll~~Rl~dlA~ln~GLkI~lnder~gi~~F~~y~~ly~~~~~~~~~~~~~~~~~~~~~~~eVal~~s~~~~~~~SFVN 296 (1388)
T PTZ00108 217 LRLLKKRVYDLAGCFGKLKVYLNGERIAIKSFKDYVDLYLPDGEEGKKPPYPFVYTSVNGRWEVVVSLSDGQFQQVSFVN 296 (1388)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEeCccccHHHHHHHHHhhccCCccCCCCceeeeccccCceEEEEEEEeCCCceEEEEEc
Confidence 999999999999999999999999998666777777776632222223333 4556568899999999987788999999
Q ss_pred CccCCCCcchhhHHHHHHHHHHHHHHHHhccccccceeeccccccccccchhhhhcccccccccccccccCChHhHhcce
Q psy7164 343 SIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHI 422 (2307)
Q Consensus 343 nI~T~eGGTHvdgfr~aLtr~i~~~~kkk~k~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~dvreg~~~vk~~dIre~L 422 (2307)
||+|++|||||+||+++|+++|++|++++++ +...|+++|||+||
T Consensus 297 ~I~T~~GGTHv~g~~~alt~~i~~~~k~kkk-----------------------------------~~~~i~~~dIregl 341 (1388)
T PTZ00108 297 SICTTKGGTHVNYILDQLISKLQEKAKKKKK-----------------------------------KGKEIKPNQIKNHL 341 (1388)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHhcc-----------------------------------cCCCCCHHHHHhCc
Confidence 9999999999999999999999999976432 12458899999999
Q ss_pred EEEEEeecCCCcccchhhhhhhccccccccc---------------------------------------------cccc
Q psy7164 423 WIFINCLIVNPTFDSQTKENMTLQKGSFGST---------------------------------------------CVPK 457 (2307)
Q Consensus 423 ~~~Vsvki~nP~FegQTKekL~~~~~~~~~k---------------------------------------------~lpK 457 (2307)
++||||+|+||+|+||||++|++....++.. .+||
T Consensus 342 ~~~Vs~~i~nP~FdsQTKekL~~~~~~~~~~~~v~e~l~~~l~~~~Ivekil~~a~aR~aa~~ak~~~~~K~~~~~~ipK 421 (1388)
T PTZ00108 342 WVFVNCLIVNPSFDSQTKETLTTKPSKFGSTCELSEKLIKYVLKSPILENIVEWAQAKLAAELNKKMKAGKKSRILGIPK 421 (1388)
T ss_pred EEEEEEecCCCccCCcccccccChhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCchh
Confidence 9999999999999999999998643222110 1789
Q ss_pred cccccccCCCCCCCcEEEEEecCccchhcccCcccccccceeeccCCcccchhhccchHHHhhcHHHHHHHHHhccccCC
Q psy7164 458 LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSK 537 (2307)
Q Consensus 458 L~Dc~~a~tk~~~~ceLfIvEGDSA~~~a~sGsak~gRD~qaIlPLRGKiLNV~ka~~~ki~~N~EI~~Li~aLGlg~~~ 537 (2307)
|+||+.||++++++|||||||||||||+|++|+++.+|++|||||||||||||++|+.+||++|+||++||+||||++++
T Consensus 422 L~Dc~~aG~k~~~~ceL~lvEGDSAggsAk~Gl~vrdR~~qaVfPLRGKiLNV~kas~~ki~~N~EI~~li~aLGlg~g~ 501 (1388)
T PTZ00108 422 LDDANDAGGKNSEECTLILTEGDSAKALALAGLSVVGRDYYGVFPLRGKLLNVRDASLKQLMNNKEIQNLFKILGLDIGK 501 (1388)
T ss_pred hhhcccccCCChhhcEEEEEecCcccchhhhcccccCccceeeeccCCcccccccccHhhhhccHHHHHHHHHhCCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcCCcCCCCCCCCCcEEecccCCCCCCchhHHHHHHHHHhhhhhhc-CCcEEEecCcEEEEEe-CCeEEEEeChHHHHHH
Q psy7164 538 KYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR-LPFLEEFITPIIKATK-AREELSFYSLPEFEEW 615 (2307)
Q Consensus 538 ~y~~~~d~~~LRYgkIiImTDaDvDG~HI~~LLltff~r~~p~Li~-~G~vy~~~tPL~kv~~-gk~~~~fys~~e~~~~ 615 (2307)
+| +|+++|||||||||||||+||+|||||||||||||||+||+ .||||+|+||||||++ |++++||||++||++|
T Consensus 502 ~y---~d~~~LRYgkIiIMTDADvDGsHIr~LLlnff~~~~p~Li~~~Gfl~~~~tPl~kv~k~gk~~~~fys~~E~e~~ 578 (1388)
T PTZ00108 502 KY---EDPKGLRYGSLMIMTDQDHDGSHIKGLLINMIHHFWPSLLKNPGFLKEFITPIVKATKKGNQVISFFTIPDFEKW 578 (1388)
T ss_pred cc---cccccCCCCeEEEEeCCCCCccHHHHHHHHHHHHhhHHhcccCCEEEEecCCEEEEEECCceeEEecCHHHHHHH
Confidence 87 78999999999999999999999999999999999999999 9999999999999999 9999999999999999
Q ss_pred HHHhcCCCccCcEEeccc----------ccC------------------------c------------------------
Q psy7164 616 KEETTNWHTYKIKYYKVV----------YVT------------------------G------------------------ 637 (2307)
Q Consensus 616 ~~~~~~~~~~~ikryKGL----------yf~------------------------~------------------------ 637 (2307)
+++++ .++|+||||||| ||. |
T Consensus 579 ~~~~~-~~~~~IkyyKGLGe~~~~e~~eyf~~~~r~~i~~~~~~~~~~~~idl~fgk~~a~~RK~wi~~~~~~~~~d~~~ 657 (1388)
T PTZ00108 579 KQTVG-LKGWKIKYYKGLGTSTDKEGKEYFSNIDKHRIRFVYVDDSDDDSIDLAFSKKRVEDRKEWITNYKGGTYVDHSK 657 (1388)
T ss_pred HHHcC-CCCCccccccchhhcCHHHHHHHhcccCceEEEEecCCccHHHHHHHHhCCCChHHHHHHHHhhCccccccccC
Confidence 98875 467999999999 875 0
Q ss_pred ------------eeeeecCC------------------------------------------------c-----------
Q psy7164 638 ------------VLLFKMNL------------------------------------------------H----------- 646 (2307)
Q Consensus 638 ------------l~~f~~~~------------------------------------------------H----------- 646 (2307)
||+|+++| |
T Consensus 658 ~~i~~~dFvnkEli~FS~~d~~RaIP~v~DGLKP~QRkILy~~~k~nl~~~~KvAql~G~V~e~~~YHHGe~Sl~~tiV~ 737 (1388)
T PTZ00108 658 KKLTYSDFVNKELILFSIADNERSIPSLVDGLKPGQRKILFACFKRNLKNEIKVAQLSGYVSEHSAYHHGEQSLQQTIVG 737 (1388)
T ss_pred ceecHHHhhhHHHHHHhhhhcccCCCccccCCCchhhHHHHHHHHcCCCccchHHHHHHHHHhhccCCCChhHHHHHHHH
Confidence 88885554 3
Q ss_pred ----ccCC--------------------Cccc---cc-------------------------CCCCCCccccCCCCeeee
Q psy7164 647 ----KVTS--------------------DSIS---MF-------------------------IGRIEPEWYIPIIPMVLV 674 (2307)
Q Consensus 647 ----fVGS--------------------D~As---iF-------------------------g~~iEP~vlppiiP~LLV 674 (2307)
|||| |||| || |+.+||+||||+||||||
T Consensus 738 MAQ~fvGsnni~Ll~p~GnFGsr~~gG~daAA~RYi~trLs~~ar~lf~~~Dd~~l~y~~~Dg~~~EP~~y~piiP~lLv 817 (1388)
T PTZ00108 738 MAQNFVGSNNINLLYPCGQFGSRLQGGKDHAAARYIFTKLSKITRYIFPEEDDPILDYLEDDGQSVEPFYYVPIIPMVLV 817 (1388)
T ss_pred HhcccchhccceeEecCCCcCCCCCCCCcchhhhhhhhhhhHHHHHHhcccccCccCccCCCCCccCCeeecCccchhhc
Confidence 9988 7777 22 999999999999999999
Q ss_pred cCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCCCCCcccCCCCCcEEEEecCcEEEEEEEEEEEcCCeEEEEecCCcc
Q psy7164 675 NGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGK 754 (2307)
Q Consensus 675 NGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~~~l~P~ykGf~G~I~~tg~g~~~vrG~~~~~~~~~IvITELPy~v 754 (2307)
|||+||||||||+||||||+|||+||+++|+|+++.+|.|||+||+|.|+.+|+|+|+++|++++.++++|+||||||++
T Consensus 818 NGa~GIatG~sT~IP~hNp~EVi~~i~~~l~~e~~~~~~P~~~gf~G~i~~~g~G~~~~rG~~~~~~~~~i~ITELP~~~ 897 (1388)
T PTZ00108 818 NGAEGIGTGFSTSIPNYNPLDIIDNLRRRLNGEEVRPLVPWYRGFKGTIERNPKGKFISKGIYEKVPDGTVEITELPIGK 897 (1388)
T ss_pred cCCceeEeeeecCCCCCCHHHHHHHHHHHHcCCchhhhcCcCCCCCcEEEecCCeEEEEEEEEEEecCCeEEEEeCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHH--HhcCCCcCc---cc-----------------------------------------cCCCC----CCC
Q psy7164 755 WTTDYKDTLDT--LLHGAEKDE---VH-----------------------------------------PGPGR----KSH 784 (2307)
Q Consensus 755 ~t~~~~e~La~--Lv~~~~~~~---y~-----------------------------------------~t~~~----~~s 784 (2307)
||++|+++|++ +.....+.+ |+ +++.. +++
T Consensus 898 ~t~~y~e~l~~~~~~~~~~I~d~~d~s~~~~v~~~I~l~~~~~~~~~~~~L~k~~kL~~s~~~~Nm~~~d~~g~i~~~~~ 977 (1388)
T PTZ00108 898 WTEDYKEFLESETLKEKDVIVDYRDYSTANTVHFTVKLNDGVLEQWEEEGIEKVFKLKSTISTTNMVLFDENGKIKKYSD 977 (1388)
T ss_pred cHHHHHHHHHHHHhcCCCcceeeeeccCCCceEEEEEECCCcCHHHHHHHHHHhcCCceeecceeEEEEeCCCCcceeCC
Confidence 99999999998 222222222 11 11211 489
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-----------hhhHHHhhcc------------------------cCCCchHHHHHHH
Q psy7164 785 PRPIAPKSYKIDDDSEEEEIEE-----------VFHDNELAKP------------------------QKTGPQLERQERQ 829 (2307)
Q Consensus 785 l~eIL~eF~~~Rl~~y~rr~e~-----------l~ni~~li~~------------------------~~~d~~~a~~~~~ 829 (2307)
+.+||++||+||+++|++|.++ |.+...||.. |.+.+...+....
T Consensus 978 ~~~Il~~f~~~Rl~~y~kR~~~~l~~l~~~~~~l~~~~rFI~~vi~~~i~i~~~~k~~l~~~L~~~gf~~~~~~~~~~~~ 1057 (1388)
T PTZ00108 978 ALDILKEFYLVRLDLYKKRKEYLLGKLERELARLSNKVRFIKHVINGELVITNAKKKDLVKELKKLGYVRFKDIIKKKSE 1057 (1388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeEEccCCHHHHHHHHHHcCCCccchhhhhccc
Confidence 9999999999999999999887 2333333333 2221111100000
Q ss_pred hhc-cccccccccCC-C-CC---CC--hhhHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHccCchhhHHHHHHHH
Q psy7164 830 AAE-GEDDEAGSQTQ-E-EE---DP--DKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901 (2307)
Q Consensus 830 ~~~-~~~~~~~~~~~-~-~~---~~--~~q~dyIL~M~L~rLT~ee~~kL~~E~~el~~ei~~L~~~s~~~lw~~DL~el 901 (2307)
... +..+..+...+ . .+ .. ..+|||||+||||+||.|++++|++|++++++|+++|++++|++||++||++|
T Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydYLL~M~i~sLT~e~v~kL~~e~~~~~~e~~~L~~~t~~~lw~~DL~~~ 1137 (1388)
T PTZ00108 1058 KITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSLTKEKVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKF 1137 (1388)
T ss_pred ccccccccccccccccccccccccccchhhhHHHhcCCHHhhhHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 000 00000000000 0 00 00 12799999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCC
Q psy7164 902 REKDKIHP 909 (2307)
Q Consensus 902 ~k~l~k~~ 909 (2307)
+++|++..
T Consensus 1138 ~~~~~~~~ 1145 (1388)
T PTZ00108 1138 EEALEEQE 1145 (1388)
T ss_pred HHHHHHHH
Confidence 99998754
No 3
>PLN03128 DNA topoisomerase 2; Provisional
Probab=100.00 E-value=4.5e-198 Score=1954.05 Aligned_cols=813 Identities=57% Similarity=0.923 Sum_probs=706.0
Q ss_pred CChhhhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeEE
Q psy7164 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIK 109 (2307)
Q Consensus 30 ~~~~~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I~ 109 (2307)
+|+|++||+|+++||||+||||||||++..+++|||||. ++|++|+|+|+||||||||||||||+||++|+|+|+.|+
T Consensus 1 ~~~~~~yqk~s~lEhV~~RP~mYIGS~~~~~~~~wv~~~--~~~~~~~v~~vpGL~ki~dEIldNAvDe~~~~g~~~~I~ 78 (1135)
T PLN03128 1 KTIEETYQKKTQLEHILLRPDTYIGSTEKHTQTLWVYEG--GEMVNREVTYVPGLYKIFDEILVNAADNKQRDPSMDSLK 78 (1135)
T ss_pred CCHHHhhhhhcchhHHhcCCCCeeCCCCCccceeeEecc--cceeeeccccchhHHHHHHHHHHHHHHHhhhcCCCcEEE
Confidence 478999999999999999999999999999999999984 489999999999999999999999999999999999999
Q ss_pred EEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCccccccC
Q psy7164 110 ITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGG 189 (2307)
Q Consensus 110 V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgG 189 (2307)
|+|+.++|+|+|+||||||||++|+++|+|+||+|||+|||| ||||+++|++|||
T Consensus 79 V~i~~~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaG-------------------------gkFdd~~ykvSGG 133 (1135)
T PLN03128 79 VDIDVEQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTS-------------------------SNFDDNEKKTTGG 133 (1135)
T ss_pred EEEEcCCCeEEEEecCccccCCCCCCCCCccceEEEEeeccc-------------------------cccCCccceeecc
Confidence 999997899999999999999999999999999999999999 9999999999999
Q ss_pred CCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCCC-CCCCcEEEEEeCcccccccccCHHHHHHHH
Q psy7164 190 RNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGS-KDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268 (2307)
Q Consensus 190 lhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~~-~~~GT~VtF~PD~~iF~~~~f~~d~l~~l~ 268 (2307)
|||||+|||||||+||+|+|++.++|+.|+|.|++||+..+.++++.+. +++||+|+|+||++||++..|+++++++|.
T Consensus 134 lhGvGasvvNaLS~~f~Vev~d~r~gk~y~q~f~~G~~~~~~p~i~~~~~~~~GT~ItF~PD~~iF~~~~fd~d~~~~l~ 213 (1135)
T PLN03128 134 RNGYGAKLANIFSTEFTVETADGNRGKKYKQVFTNNMSVKSEPKITSCKASENWTKITFKPDLAKFNMTRLDEDVVALMS 213 (1135)
T ss_pred ccCCCCeEEEeecCeEEEEEEECCCCeEEEEEeCCCcccCCCceeccCCCCCCceEEEEEECHHHcCCCccChHHHHHHH
Confidence 9999999999999999999998889999999999999988888777654 479999999999999999999999999999
Q ss_pred HHHHHhh-ccCCCcEEEeccccCCccchHHHHHHHhccCCCCCCCeEEEEEecCCeeEEEEeecCCCceEEEeeCCccCC
Q psy7164 269 RRAYDAA-ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATT 347 (2307)
Q Consensus 269 ~Rl~dlA-~LnpGLkI~lnder~~~~G~~dYV~~~~~~~~~~~~~~~ii~e~~~~~~EVAl~~s~~~y~~~SFVNnI~T~ 347 (2307)
+|++|+| ||||||+|+|+|+|...+||++||++|.+.... ..+..++++..+.+|||||+|++++|+++||||||+|+
T Consensus 214 kRl~elAa~Ln~GlkI~Lnder~~~~G~~dyv~~~~~~~~~-~~~~~i~~~~~~~~~eva~~~s~~~~~~~SFVN~I~T~ 292 (1135)
T PLN03128 214 KRVYDIAGCLGKKLKVELNGKKLPVKSFQDYVGLYLGPNSR-EDPLPRIYEKVNDRWEVCVSLSDGSFQQVSFVNSIATI 292 (1135)
T ss_pred HHHHHHHHhCCCCcEEEEecCCCCCCCHHHHHHHHhcCCCC-CCCCCeEEEecCceEEEEEEEcCCCceEEEEECcEecC
Confidence 9999998 999999999999998889999999987632211 11223556666789999999998778999999999999
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHhccccccceeeccccccccccchhhhhcccccccccccccccCChHhHhcceEEEEE
Q psy7164 348 KGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFIN 427 (2307)
Q Consensus 348 eGGTHvdgfr~aLtr~i~~~~kkk~k~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~dvreg~~~vk~~dIre~L~~~Vs 427 (2307)
+|||||+||+++|+++++++++++++ .+..++++|||+||++|||
T Consensus 293 ~GGTHv~g~~~~i~~~i~~~~~kk~K-----------------------------------~~~~l~~~diregL~~vIs 337 (1135)
T PLN03128 293 KGGTHVDYVADQIVKHIQEKVKKKNK-----------------------------------NATHVKPFQIKNHLWVFVN 337 (1135)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHccC-----------------------------------CCCCCCHHHHHhCcEEEEE
Confidence 99999999999999999999887654 0135789999999999999
Q ss_pred eecCCCcccchhhhhhhcccccccc--------------------------------------------ccccccccccc
Q psy7164 428 CLIVNPTFDSQTKENMTLQKGSFGS--------------------------------------------TCVPKLEDAND 463 (2307)
Q Consensus 428 vki~nP~FegQTKekL~~~~~~~~~--------------------------------------------k~lpKL~Dc~~ 463 (2307)
|+|+||+|+||||++|++....++. ..+|||+||+.
T Consensus 338 ~ki~nP~FesQTKekL~s~~~~~~v~~~v~e~~~~~l~~~~Ivekil~~a~aR~aa~~~k~~~~kk~~~~~ipKL~Dc~~ 417 (1135)
T PLN03128 338 CLIENPTFDSQTKETLTTRPSSFGSKCELSEEFLKKVEKCGVVENILSWAQFKQQKELKKKDGAKRQRLTGIPKLDDAND 417 (1135)
T ss_pred EecCCCcccCcccccccChhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccccc
Confidence 9999999999999999763221110 01689999999
Q ss_pred cCCCCCCCcEEEEEecCccchhcccCcccccccceeeccCCcccchhhccchHHHhhcHHHHHHHHHhccccCCCcCCcC
Q psy7164 464 AGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVE 543 (2307)
Q Consensus 464 a~tk~~~~ceLfIvEGDSA~~~a~sGsak~gRD~qaIlPLRGKiLNV~ka~~~ki~~N~EI~~Li~aLGlg~~~~y~~~~ 543 (2307)
||++++++|||||||||||||+|++|+++.+|++|||||||||||||++|+.+||++|+||++||+||||+++++|+ ++
T Consensus 418 ag~k~~~~ceLflvEGDSAggsAk~Gl~~rdR~~qaIlPLRGKiLNV~ka~~~ki~~N~EI~~li~alG~~~g~~~~-~~ 496 (1135)
T PLN03128 418 AGGKKSKDCTLILTEGDSAKALAMSGLSVVGRDHYGVFPLRGKLLNVREASHKQIMKNAEITNIKQILGLQFGKTYD-EE 496 (1135)
T ss_pred cCCCChhHcEEEEEecCCCCcchhhcccccCccceeeeccCCceeccccCCHHHHhcchHHHHHHHHhCCCcCcccc-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998883 56
Q ss_pred CCCCCCCCcEEecccCCCCCCchhHHHHHHHHHhhhhhhcC-CcEEEecCcEEEEEeCCeEEEEeChHHHHHHHHHhcCC
Q psy7164 544 DMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL-PFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNW 622 (2307)
Q Consensus 544 d~~~LRYgkIiImTDaDvDG~HI~~LLltff~r~~p~Li~~-G~vy~~~tPL~kv~~gk~~~~fys~~e~~~~~~~~~~~ 622 (2307)
|+++||||||||||||||||+|||||||||||||||+||+. ||||+|+||||||++|+++.||||++||++|++++++.
T Consensus 497 d~~~LRYgkIiIMTDaDvDGsHIr~LLltff~~~~p~Li~~~G~l~~~~tPl~kv~~gk~~~~~~s~~e~~~~~~~~~~~ 576 (1135)
T PLN03128 497 NTKSLRYGHLMIMTDQDHDGSHIKGLIINFFHSFWPSLLKIPGFLVEFITPIVKATKGGKSLSFYTMPEYEAWKESLEGE 576 (1135)
T ss_pred ChhhcccCeEEEEeCCCCCcchhHHHHHHHHHHhCHHhhccCCeEEEccCCEEEEEcCCeeEecCCHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999997 99999999999999999999999999999999887654
Q ss_pred -CccCcEEeccc----------ccCc------------------------------------------------------
Q psy7164 623 -HTYKIKYYKVV----------YVTG------------------------------------------------------ 637 (2307)
Q Consensus 623 -~~~~ikryKGL----------yf~~------------------------------------------------------ 637 (2307)
++|+||||||| ||+.
T Consensus 577 ~~~~~ikyyKGLGe~~~~e~~e~f~~~~~~~~~f~~~~~~~~~~i~~aF~k~~~~~RK~Wl~~~~~~~~~d~~~~~i~~~ 656 (1135)
T PLN03128 577 TKGWTIKYYKGLGTSTSEEAKEYFSNLDIHKKEFLWQSDEDGDLIDMAFSKKRVEDRKIWLNNYEPGTFLDQTGNGISYS 656 (1135)
T ss_pred CCCccceeecccccCCHHHHHHHHHhHHHhEEEEEeCCCCcHHHHHHhcCCCcHHHHHHHHHhCCCCccccCCCccccHH
Confidence 57999999999 8860
Q ss_pred ------eeeeecCC------------------------------------------------c---------------cc
Q psy7164 638 ------VLLFKMNL------------------------------------------------H---------------KV 648 (2307)
Q Consensus 638 ------l~~f~~~~------------------------------------------------H---------------fV 648 (2307)
||+|+|.+ | ||
T Consensus 657 dfi~~eli~fs~~~~~RaiP~v~DGLKPvQRkILy~~~~~~~~~~~Kva~l~G~V~e~~~YHHGd~Sl~~tiV~mAQ~f~ 736 (1135)
T PLN03128 657 DFINKELILFSQADLARSIPSMVDGLKPSQRKVLFACFKRNLKSEIKVAQLSGYVAEHSAYHHGEASLASTIIGMAQDFV 736 (1135)
T ss_pred HHHHHHHHHHHHHHhcCCCCchhcCCCchhhHHHHHHHhcCCCccchHHHHHHHHhhccCCCCChHHHHHHHHHHhhhcc
Confidence 45552222 3 98
Q ss_pred CC--------------------Cccc---c-----------c--------------CCCCCCccccCCCCeeeecCCCce
Q psy7164 649 TS--------------------DSIS---M-----------F--------------IGRIEPEWYIPIIPMVLVNGAEGI 680 (2307)
Q Consensus 649 GS--------------------D~As---i-----------F--------------g~~iEP~vlppiiP~LLVNGasGI 680 (2307)
|| |||| | | |+.+||+||||+|||||||||+||
T Consensus 737 Gsnn~~Ll~~~GnFGSr~~~G~~aAa~RYi~~rLs~ia~~lf~~~dd~~l~y~~~Dg~~~EP~~~~p~iP~lLvNGs~GI 816 (1135)
T PLN03128 737 GSNNINLLTPSGQFGTRLQGGKDAASARYIFTRLSPITRALFPKDDDVLLNYLNEDGQSIEPEWYCPIIPMVLVNGSEGI 816 (1135)
T ss_pred ccccceeeccCCCCCCCCCCCChhhhhhHHhhhhhHHHHHHhccccccccCCcCCCccccCCceecccchhhhccCCccc
Confidence 87 6676 2 2 999999999999999999999999
Q ss_pred eecccCCCCCCCHHHHHHHHHHHHcCCCCCCCcccCCCCCcEEEE---ecCcEEEEEEEEEEEcCCeEEEEecCCccchH
Q psy7164 681 GTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNFKGEIDY---CGDSRFVVNGEIAILDDDKLEITELQVGKWTT 757 (2307)
Q Consensus 681 AvGmATnIPPHN~~EVIdal~~lL~~~~~~~l~P~ykGf~G~I~~---tg~g~~~vrG~~~~~~~~~IvITELPy~v~t~ 757 (2307)
|||||||||||||+|||+||+++|+|+++.+|.|||+||+|.|.. ||+|+|++||++++.++++|+||||||++||+
T Consensus 817 a~G~aT~IPphN~~evi~~~~~~i~~~~~~~l~p~~~g~~G~i~~~~~tg~g~~~~~g~~~~~~~~~i~ItElP~~~~~~ 896 (1135)
T PLN03128 817 GTGWSTFIPNYNPRDIIANIRRLLRGEELEPMHPWYRGFKGTITEVSTSRSGSYTVTGIIEQIGDTTIRITELPVRKWTQ 896 (1135)
T ss_pred ccccccCCCCCCHHHHHHHHHHHHcCCCHHHHHhhccCCCceEEEccccCCceEEEEEEEEEecCcEEEEEecCCccchH
Confidence 999999999999999999999999999999999999999998855 57999999999999888999999999999999
Q ss_pred HHHHHHHHHhcC--CCc---Cc---cc--------------------------cCCC----------------C---CCC
Q psy7164 758 DYKDTLDTLLHG--AEK---DE---VH--------------------------PGPG----------------R---KSH 784 (2307)
Q Consensus 758 ~~~e~La~Lv~~--~~~---~~---y~--------------------------~t~~----------------~---~~s 784 (2307)
+|++.|+.|++. +++ .+ |+ .+.. + +++
T Consensus 897 ~y~~~l~~l~~~~~k~~~~I~d~~d~s~~~~v~~~i~l~~~~~~~~~~~~l~k~~~L~~~~~~~nm~l~d~~~~i~ky~~ 976 (1135)
T PLN03128 897 DYKEFLEALLTGTKKKEPEIKDFKENHTDTTVHFTVTLSEEKMARALAEGLEKKFKLSTTISTSNMHLFDKDGKIKKYDS 976 (1135)
T ss_pred HHHHHHHHHHhhhccCCcceeeeeeccCCCceEEEEEECcchhHHHHHHHHHhhcceehhcCceEEEEECCCCcccCCCC
Confidence 999999999753 221 11 11 1111 1 369
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-----------hhhHHHhhcc-cCCCchHHHH-------HHHhh-cc---ccccc---
Q psy7164 785 PRPIAPKSYKIDDDSEEEEIEE-----------VFHDNELAKP-QKTGPQLERQ-------ERQAA-EG---EDDEA--- 838 (2307)
Q Consensus 785 l~eIL~eF~~~Rl~~y~rr~e~-----------l~ni~~li~~-~~~d~~~a~~-------~~~~~-~~---~~~~~--- 838 (2307)
+++||++|++||+++|++|.++ ++|..+||+. ...+.+...+ ..... .. ..+.+
T Consensus 977 ~~~il~~f~~~R~~~y~kRk~~~l~~~~~~~~~l~~k~~fi~~v~~~~~~i~~~~k~~~~~~L~~~~f~~~~~~~~~~~~ 1056 (1135)
T PLN03128 977 PEDILEEFFHLRLDLYVKRKEVLLENLEYELKKLDNKARFILAVVKGEIVVNNRKRAELLAELEEKGFDKFPKTAKISET 1056 (1135)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHHhheecceEEEcCCCHHHHHHHHHHcCCCCcchhhhhccc
Confidence 9999999999999999999877 2322355555 3333322111 11111 00 00000
Q ss_pred -------ccc--CC--CCCCChhhHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHhC
Q psy7164 839 -------GSQ--TQ--EEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDK 906 (2307)
Q Consensus 839 -------~~~--~~--~~~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~el~~ei~~L~~~s~~~lw~~DL~el~k~l~ 906 (2307)
+.. ++ .......+|||||+||||+||.|++++|++|+++++++|++|+++||++||++||++|+++|+
T Consensus 1057 ~~~~~~~~~~~~~~~~~~~~~~~~~~yLL~M~l~~LT~e~~~kL~~e~~~~~~ei~~l~~~t~~~~w~~DLd~~~~~~~ 1135 (1135)
T PLN03128 1057 NVVGDRDGEASEEEEASDNELAKSYDYLLGMPISSLTLEKVDELRAERAKKETEVEELKKTTPEDLWRKDLDAFEEALD 1135 (1135)
T ss_pred cccccccccccchhhhcccccccchHHHHhCHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhC
Confidence 000 00 001112359999999999999999999999999999999999999999999999999999874
No 4
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.3e-143 Score=1324.35 Aligned_cols=500 Identities=32% Similarity=0.460 Sum_probs=448.8
Q ss_pred hhhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeEEEEE
Q psy7164 33 EKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITV 112 (2307)
Q Consensus 33 ~~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I~V~i 112 (2307)
+..||+|+|||||||||||||||++. .+||||+||||||||+||++ +|+|+.|.|+|
T Consensus 8 a~~I~vL~GLEaVRkRPGMYIGst~~----------------------~~GLhHlv~EVvDNsiDEal-aG~~~~I~V~l 64 (635)
T COG0187 8 ASSIQVLEGLEAVRKRPGMYIGSTGD----------------------GRGLHHLVWEVVDNSIDEAL-AGYADRIDVTL 64 (635)
T ss_pred HhHceeccCcHHhhcCCCceeccCCC----------------------CCcceeeEeEeeechHhHHh-hCcCcEEEEEE
Confidence 36889999999999999999999985 27999999999999999998 68999999999
Q ss_pred EccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCccccccCCCc
Q psy7164 113 NQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNG 192 (2307)
Q Consensus 113 ~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhG 192 (2307)
+. ||+|+|.||||||||++||++++|++|+|||+|||| ||||++.|++||||||
T Consensus 65 ~~-d~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAG-------------------------GKFd~~~YkvSGGLHG 118 (635)
T COG0187 65 HE-DGSISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAG-------------------------GKFDNDSYKVSGGLHG 118 (635)
T ss_pred cC-CCeEEEEECCCCCccccCCCCCCCceEEEEEeeccC-------------------------cccCCCccEeecCCCc
Confidence 96 699999999999999999999999999999999999 9999999999999999
Q ss_pred ccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCC-CCCCCcEEEEEeCcccccccccCHHHHHHHHHHH
Q psy7164 193 YGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSG-SKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRA 271 (2307)
Q Consensus 193 VGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~-~~~~GT~VtF~PD~~iF~~~~f~~d~l~~l~~Rl 271 (2307)
||+|||||||+||+|+|++ +|+.|+|.|++|++..+.++++.+ ++++||+|+|+||++||+++.|++++|+ +|+
T Consensus 119 VG~SVVNALS~~l~v~v~r--~gk~y~q~f~~G~~~~~l~~ig~~~~~~~GT~V~F~PD~~iF~~~~f~~~~l~---~Rl 193 (635)
T COG0187 119 VGVSVVNALSTWLEVEVKR--DGKIYRQRFERGVPVTPLEVIGSTDTKKTGTKVRFKPDPEIFGETEFDYEILK---RRL 193 (635)
T ss_pred cceEEEecccceEEEEEEE--CCEEEEEEEeCCCcCCCceecccCCCCCCccEEEEEcChHhcCCcccCHHHHH---HHH
Confidence 9999999999999999975 799999999999998777777763 4578999999999999999999999986 999
Q ss_pred HHhhccCCCcEEEeccccCC--------ccchHHHHHHHhcc-CCCCCCCeEEEEEecCCeeEEEEeecCCCc--eEEEe
Q psy7164 272 YDAAASTKDVKVFLNGEKLP--------VKNFQDYVKLYTDR-QDEDGDPVKIIYENVNPRWEVAIAPSDRGF--QQVSF 340 (2307)
Q Consensus 272 ~dlA~LnpGLkI~lnder~~--------~~G~~dYV~~~~~~-~~~~~~~~~ii~e~~~~~~EVAl~~s~~~y--~~~SF 340 (2307)
+++||||+||+|.|+|+|.. .+|+++||.+++.. ...+..++....+..++.|||||||++ +| +++||
T Consensus 194 relA~L~~gl~I~l~d~r~~~~~~~~~y~~Gl~~yv~~l~~~k~~l~~~~~~~~~~~~~~~vEvA~q~~d-~~~e~~~SF 272 (635)
T COG0187 194 RELAFLNKGVKITLTDERTGEEKKEFHYEGGLKDYVEYLNKGKTPLHEEIFYFNGEKDGIAVEVALQWND-GYSENILSF 272 (635)
T ss_pred HHHhccCCCCEEEEEeccCCcccceeecccHHHHHHHHHhcCCCccccCceecccCccceEEEEEEEEec-CCceEEEEe
Confidence 99999999999999999974 25999999998843 223333443333455778999999997 55 46999
Q ss_pred eCCccCCCCcchhhHHHHHHHHHHHHHHHHhccccccceeeccccccccccchhhhhcccccccccccccccCChHhHhc
Q psy7164 341 VNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKN 420 (2307)
Q Consensus 341 VNnI~T~eGGTHvdgfr~aLtr~i~~~~kkk~k~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~dvreg~~~vk~~dIre 420 (2307)
||||+|++||||++||++|||++||+|++++++ +|+ +. ++++||||
T Consensus 273 vNnI~T~eGGTH~~Gfr~altr~in~y~~~~~~----------------~k~-----------------~~-l~g~Dire 318 (635)
T COG0187 273 VNNIPTREGGTHEAGFRSALTRAINEYAKKKNL----------------LKE-----------------GD-LTGDDIRE 318 (635)
T ss_pred ecCccCCCCchHHHHHHHHHHHHHHHHHHHhCc----------------Ccc-----------------cC-CCHHHHhh
Confidence 999999999999999999999999999998875 121 12 77899999
Q ss_pred ceEEEEEeecCCCcccchhhhhhhccccc---------------------------------------------------
Q psy7164 421 HIWIFINCLIVNPTFDSQTKENMTLQKGS--------------------------------------------------- 449 (2307)
Q Consensus 421 ~L~~~Vsvki~nP~FegQTKekL~~~~~~--------------------------------------------------- 449 (2307)
+|++||||+|+||+|+||||+||++....
T Consensus 319 gl~aviSvki~~PqFegQTK~KL~n~e~~~~V~~~v~~~~~~~l~enp~~a~~i~~k~i~aa~aR~aarkare~~R~k~~ 398 (635)
T COG0187 319 GLTAVISVKIPDPQFEGQTKEKLGNSEVRSIVEKLVSEAFSLFLEENPQEAKKIVEKAIAAAKAREAARKARELTRRKSA 398 (635)
T ss_pred ccEEEEEEECCCCCcCcccccccccHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999752100
Q ss_pred ccccccc-ccccccccCCCCCCCcEEEEEecCccchhcccCcccccccc--eeeccCCcccchhhccchHHHhhcHHHHH
Q psy7164 450 FGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPLRGKLLNVREATHKQILENAEINN 526 (2307)
Q Consensus 450 ~~~k~lp-KL~Dc~~a~tk~~~~ceLfIvEGDSA~~~a~sGsak~gRD~--qaIlPLRGKiLNV~ka~~~ki~~N~EI~~ 526 (2307)
+....|| ||+||+ +++|++|||||||||||| ||||||||| ||||||||||||||||+.+||++|+||++
T Consensus 399 ~~~~~LpGKLadC~---skd~~~~ELfiVEGDSAG-----GSAKqgRdR~~QAILPLRGKiLNVeka~~~kil~N~EI~~ 470 (635)
T COG0187 399 LDIPGLPGKLADCT---SKDPEKSELFLVEGDSAG-----GSAKQGRDREFQAILPLRGKILNVEKARLDKILKNEEIQT 470 (635)
T ss_pred cccCCCCCcCcccc---cCCcccceEEEEecCCcc-----hhhhhccCccceEEecccCcchhhhhccHhhhhhhHHHHH
Confidence 0001144 999995 799999999999999999 788899996 99999999999999999999999999999
Q ss_pred HHHHhccccCCCcCCcCCCCCCCCCcEEecccCCCCCCchhHHHHHHHHHhhhhhhcCCcEEEecCcEEEEEeCCeEEEE
Q psy7164 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSF 606 (2307)
Q Consensus 527 Li~aLGlg~~~~y~~~~d~~~LRYgkIiImTDaDvDG~HI~~LLltff~r~~p~Li~~G~vy~~~tPL~kv~~gk~~~~f 606 (2307)
||+|||||++++ ||+++||||||||||||||||+|||+|||||||||||+||++||||+|+||||||+++++..|+
T Consensus 471 ii~AlG~g~~~~----fd~~~LRY~kIiIMTDADvDGaHIrtLLlTfFyr~m~~LIe~G~vyiA~PPLYkv~~~k~~~Y~ 546 (635)
T COG0187 471 IITALGTGIGKD----FDLEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYMPPLIENGHVYIAQPPLYKVKKGKKTFYA 546 (635)
T ss_pred HHHHhCCCCCCC----CChhhCccCcEEEEecCCCChHHHHHHHHHHHHHHhHHHHHcCcEEEEcCceEEEEcCCceeEe
Confidence 999999999976 6999999999999999999999999999999999999999999999999999999999988999
Q ss_pred eChHHHHHHHHHhcCCCccCcEEeccc
Q psy7164 607 YSLPEFEEWKEETTNWHTYKIKYYKVV 633 (2307)
Q Consensus 607 ys~~e~~~~~~~~~~~~~~~ikryKGL 633 (2307)
|++.|+++...++...++|+|||||||
T Consensus 547 ~~d~E~~~~~~~~~~~~~~~IqRyKGL 573 (635)
T COG0187 547 YDDEELEKLLERLGKKKGYEIQRYKGL 573 (635)
T ss_pred CCHHHHHHHHHHhcccCCceeEeeccc
Confidence 999999988877642258999999999
No 5
>KOG0355|consensus
Probab=100.00 E-value=1.5e-139 Score=1306.88 Aligned_cols=641 Identities=68% Similarity=1.120 Sum_probs=604.2
Q ss_pred CChhhhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeEE
Q psy7164 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIK 109 (2307)
Q Consensus 30 ~~~~~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I~ 109 (2307)
+++++.||+.+++|||++||+.||||+++.+..||||++++++|+++ +|+|||||||||||+||+| ++|+..|+.|.
T Consensus 2 l~~~~~yqkks~~ehiL~rPdtyig~ve~~~~~~wv~~~e~~k~~~~--t~~pGl~ki~dEilvNaad-k~rd~~m~~i~ 78 (842)
T KOG0355|consen 2 LSIEDIYQKKSQLEHILLRPDTYIGSVEPTEQLMWVYDMEKRKMVQR--TYVPGLYKIFDEILVNAAD-KQRDPKMNTIK 78 (842)
T ss_pred ccHHHHHhhhhhhhhhhcCCcccccccccceeEEeeeccccCceeEe--ecCCcHHHHHHHHhhcccc-cccCCCcceeE
Confidence 67899999999999999999999999999998999999999999999 9999999999999999999 99999999999
Q ss_pred EEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCccccccC
Q psy7164 110 ITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGG 189 (2307)
Q Consensus 110 V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgG 189 (2307)
|+||++++.|+|+|||+|||++.|+.+++|+||+|||+|||| +|||+++.+++||
T Consensus 79 v~i~~e~~~isv~nnGkGIPv~~H~~ek~yvpelifg~Llts-------------------------sny~d~ekK~tgg 133 (842)
T KOG0355|consen 79 VTIDKEKNEISVYNNGKGIPVTIHKVEKVYVPELIFGNLLTS-------------------------SNYDDDEKKVTGG 133 (842)
T ss_pred EEEccCCCEEEEEeCCCcceeeecccccccchHHHHhhhhhc-------------------------cccCCCccccccC
Confidence 999999999999999999999999999999999999999999 9999999999999
Q ss_pred CCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCCCCCCCcEEEEEeCcccccccccCHHHHHHHHH
Q psy7164 190 RNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269 (2307)
Q Consensus 190 lhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~~~~~GT~VtF~PD~~iF~~~~f~~d~l~~l~~ 269 (2307)
+||+|++|+|+||..|.|+|++.++++.|+|.|.+||+..+.+.+....++.||+|||+||.+.|.+..+|.|++++|.+
T Consensus 134 rngygakLcniFs~~f~~Et~d~~~~~~~kQ~w~~nm~~~~~~~i~~~~~~~yTkitF~PDl~~F~m~eLD~Div~l~~r 213 (842)
T KOG0355|consen 134 RNGYGAKLCNIFSTEFTVETADREYKMAFKQTWINNMTRDEEPKIVPSTDEDYTKITFSPDLEKFKMKELDDDIVALMAR 213 (842)
T ss_pred CCccceeeeeeccccceeeeeehHhHHHHHHhhhcCCcccCCceeecCCCCCcceEEeCcChHhcCchhhcchHHHhHHh
Confidence 99999999999999999999999999999999999999999998888778889999999999999999999999999999
Q ss_pred HHHHhhccCCCcEEEeccccCCccchHHHHHHHhccCCCCCCCeEEEEEecCCeeEEEEeecCCCceEEEeeCCccCCCC
Q psy7164 270 RAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKG 349 (2307)
Q Consensus 270 Rl~dlA~LnpGLkI~lnder~~~~G~~dYV~~~~~~~~~~~~~~~ii~e~~~~~~EVAl~~s~~~y~~~SFVNnI~T~eG 349 (2307)
|++++|....++++.+||++.+++||.+||.+|.. ....+++..++|+..+.+|||+++.++.+|+++||||+|+|.+|
T Consensus 214 r~~d~a~~~~~vkv~ln~~~~~~~~f~~yv~~~~~-~~~~~~~~~~ihe~~~~RwEv~~a~s~~~fqqisfvNsI~T~kG 292 (842)
T KOG0355|consen 214 RAYDLAGSVKSVKVELNGKNIPVKGFYDYVKMYLE-VLWLNDDLKPLHEVLNFRWEVALALSDVGFQQVSFVNSIATTKG 292 (842)
T ss_pred hhhhhcccccceeeeecCCCCccchHHHHHhhccc-cccccCcchhhhcccchHHHHhhhccccccceeeeecceeecCC
Confidence 99999998899999999999999999999999986 32334555688899999999999999989999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHhccccccceeeccccccccccchhhhhcccccccccccccccCChHhHhcceEEEEEee
Q psy7164 350 GRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCL 429 (2307)
Q Consensus 350 GTHvdgfr~aLtr~i~~~~kkk~k~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~dvreg~~~vk~~dIre~L~~~Vsvk 429 (2307)
|||++++++++++.|+..+++++. + +.++|++++|++|||+||||.
T Consensus 293 GThVd~V~D~iv~~l~~vvkKk~~-----------------~-----------------~~~svk~f~vkn~L~vfVN~l 338 (842)
T KOG0355|consen 293 GTHVDYVVDQIVAKLIDVVKKKKV-----------------K-----------------KDISVKPFQVKNHLWVFVNCL 338 (842)
T ss_pred CcccchhhhhHHHHHHHHhccccc-----------------c-----------------cccccchhhhhcceEEEEEEE
Confidence 999999999999999998887654 0 125789999999999999999
Q ss_pred cCCCcccchhhhhhhcccccccccc--------------------------------------------ccccccccccC
Q psy7164 430 IVNPTFDSQTKENMTLQKGSFGSTC--------------------------------------------VPKLEDANDAG 465 (2307)
Q Consensus 430 i~nP~FegQTKekL~~~~~~~~~k~--------------------------------------------lpKL~Dc~~a~ 465 (2307)
|+||+|+||||+.|++....|++.| +|||.|++.++
T Consensus 339 IENPtFesQTke~lt~~~~~fgs~~elsek~~k~~~~~~i~esils~s~~~~~~dL~kk~~~~~s~~e~I~KleDa~~ag 418 (842)
T KOG0355|consen 339 IENPTFESQTKERLTLRPKRFGSDCELSEKFTKAIELKGVVESILSKSLNKYKDDLAKKRGKLTSRSKGIPKLEDANDAG 418 (842)
T ss_pred ecCccccccchhhcccccccccceEeehhHHHHHHHhCchHHHHHHHHHHHHHHhhhhhhhhhhccccchhHhhhccccc
Confidence 9999999999999987665554322 78999999999
Q ss_pred CCCCCCcEEEEEecCccchhcccCcccccccceeeccCCcccchhhccchHHHhhcHHHHHHHHHhccccCCCcCCcCCC
Q psy7164 466 TKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDM 545 (2307)
Q Consensus 466 tk~~~~ceLfIvEGDSA~~~a~sGsak~gRD~qaIlPLRGKiLNV~ka~~~ki~~N~EI~~Li~aLGlg~~~~y~~~~d~ 545 (2307)
++.+..|+|+++|||||+++|++|+.+.|||++||||||||+|||++++.++|++|+||++|+.+||++..++| ||.
T Consensus 419 ~k~s~kctlIltEgdsaksLavsGl~vvgRd~~gVfplrgklLNv~e~s~kqilkn~EI~aIikIlgl~~~~~y---~~~ 495 (842)
T KOG0355|consen 419 TKTSEKCTLILTEGDSAKSLAVSGLSVVGRDYYGVFPLRGKLLNVREASHKQILKNAEINAIIKILGLQYKKKY---FDV 495 (842)
T ss_pred ccccccceeEEeccccchhheecccccccceeEeecccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---ccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888 789
Q ss_pred CCCCCCcEEecccCCCCCCchhHHHHHHHHHhhhhhhcCCcEEEecCcEEEEEeCCeEEEEeChHHHHHHHHHhcCCCcc
Q psy7164 546 KTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHTY 625 (2307)
Q Consensus 546 ~~LRYgkIiImTDaDvDG~HI~~LLltff~r~~p~Li~~G~vy~~~tPL~kv~~gk~~~~fys~~e~~~~~~~~~~~~~~ 625 (2307)
++|||||+|||||||+||+||+||||||||+|||+|++.|||+.|+|||+|+++|++..+|||++||++|+++.++++.|
T Consensus 496 eslryg~~mimtDQd~dgshikgllInf~~~~~psl~~~~fleefitpi~k~~~~~~~~~fys~pey~kw~~~~~~~~~~ 575 (842)
T KOG0355|consen 496 ESLRYGKLMIMTDQDHDGSHIKGLLINFIHHFWPSLLQIPFLEEFITPIVKATKGKQEVSFYSLPEYEKWKKNTDNWKSW 575 (842)
T ss_pred cccchhheEeeeccccccchHHHHHHHHHHHhhHHhhcCCcceecCCcceEeccCCcceeeeccHHHHHHHhcCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred CcEEeccc----------ccCc----------------------------------------------------------
Q psy7164 626 KIKYYKVV----------YVTG---------------------------------------------------------- 637 (2307)
Q Consensus 626 ~ikryKGL----------yf~~---------------------------------------------------------- 637 (2307)
+||||||| ||+.
T Consensus 576 ~ikyykglgts~~~e~keyf~~~~~h~~~F~~~~~~d~~~i~~af~k~k~~~rk~wL~~~~~~~~~~~~~~v~~sdf~~e 655 (842)
T KOG0355|consen 576 KIKYYKGLGTSTSKEAKEYFSDLDRHRILFKYDGGIDDEAIDMAFSKKKIDARKEWLRKYMPEYLYKTTKFVTISDFVKE 655 (842)
T ss_pred ceEEeecCCcccHHHHHHHhcCcchheEEEeccCcchHHHHhhhcccccHHHHHHHHHHHhHHhcccccceeEHHHHHHH
Confidence 99999999 8871
Q ss_pred eeee-------------------------ecCC--------------------c---------------ccCCCccc---
Q psy7164 638 VLLF-------------------------KMNL--------------------H---------------KVTSDSIS--- 654 (2307)
Q Consensus 638 l~~f-------------------------~~~~--------------------H---------------fVGSD~As--- 654 (2307)
||+| +||+ | |||-|+||
T Consensus 656 lilf~~~~sIp~~~dglkpgqRkv~~~~~k~n~~~E~Kv~ql~g~v~~~s~yhhge~sl~~ti~~l~q~~~gkdaa~~ry 735 (842)
T KOG0355|consen 656 LILFSNADSIPSLVDGLKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSAYHHGEQSLMSTIVNLAQDFVGKDAASARY 735 (842)
T ss_pred HHHHHhccccHhHHhccCccchhhhhhhhhhcCCCceeEeeecchHHHHHHhhcccHhHHHHHHHHHHhhcCCcchhhHH
Confidence 3443 5555 3 88889998
Q ss_pred cc-------------------------CCCCCCccccCCCCeeeecCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCC
Q psy7164 655 MF-------------------------IGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP 709 (2307)
Q Consensus 655 iF-------------------------g~~iEP~vlppiiP~LLVNGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~ 709 (2307)
|| |+.+||+ |+||+||+|||||+||||||||+||+|||+|||.+++++|+|+++
T Consensus 736 i~t~l~~~tr~~f~~~dd~ll~~~~~~~~~vep~-y~pi~p~vlvngaegiGtGws~~i~n~n~~~iv~~~r~~~~~~~~ 814 (842)
T KOG0355|consen 736 IFTKLSPLTRLLFPPADDLLLKYLNEDGQRVEPE-YCPIIPMVLVNGAEGIGTGWSTFIPNYNPREIVKNIRRLINGEPP 814 (842)
T ss_pred HHHhcChhhhhcCCCCchhHhhhhccCCcCcCcc-cccceeEEEeeccccccCCccccCCCCCHHHHHHHHHHhhcCCCc
Confidence 43 9999999 999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCcEEEEecCcEEEEEEEE
Q psy7164 710 LPMKPWYKNFKGEIDYCGDSRFVVNGEI 737 (2307)
Q Consensus 710 ~~l~P~ykGf~G~I~~tg~g~~~vrG~~ 737 (2307)
.+|.|||++|+|+|+.++.++|.+.|.+
T Consensus 815 ~~~~p~yr~frg~i~~~~~~~y~~~g~i 842 (842)
T KOG0355|consen 815 KAMAPWYRNFRGTIEVIAPSRYAISGEI 842 (842)
T ss_pred ccCCchhhhcceEEEEeccCceEEEeeC
Confidence 9999999999999999999999999864
No 6
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=100.00 E-value=1.4e-133 Score=1286.35 Aligned_cols=512 Identities=23% Similarity=0.310 Sum_probs=435.4
Q ss_pred CCChhhhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeE
Q psy7164 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCI 108 (2307)
Q Consensus 29 ~~~~~~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I 108 (2307)
.++. +.+++|+|+||||+||||||||++ ++||||||||||||||||++ +|+|+.|
T Consensus 99 ~Y~a-~~I~vLeGLEaVRkRPGMYIGst~-----------------------~~GLhhLv~EIlDNSVDE~l-aG~~~~I 153 (903)
T PTZ00109 99 EYDA-DDIVVLEGLEAVRKRPGMYIGNTD-----------------------EKGLHQLLFEILDNSVDEYL-AGECNKI 153 (903)
T ss_pred CCCh-HhCeehhccHHHhcCCCceeCCCC-----------------------CCcceEEEEEEeeccchhhc-cCCCcEE
Confidence 4777 477999999999999999999997 48999999999999999998 5999999
Q ss_pred EEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccc------cccccccccccccccc------
Q psy7164 109 KITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDK------VTGVVPTMIFGHLLTS------ 176 (2307)
Q Consensus 109 ~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~------~~~~~~~~~~~~~~~g------ 176 (2307)
+|+|+. ||+|+|+|||||||||+|+++|+|+||+|||+|||||||+++... +++++ ..++.
T Consensus 154 ~V~i~~-DgsItV~DnGRGIPvd~h~k~g~s~~E~VlT~LhAGGKF~~~~~~~~~~~~~~~~~------d~~~~~k~~~~ 226 (903)
T PTZ00109 154 TVVLHK-DGSVEISDNGRGIPCDVSEKTGKSGLETVLTVLHSGGKFQDTFPKNSRSDKSEDKN------DTKSSKKGKSS 226 (903)
T ss_pred EEEEcC-CCeEEEEeCCccccccccccCCCcceeEEEEEeccCccccCccccccccccccccc------ccccccccccc
Confidence 999998 599999999999999999999999999999999999999885321 00110 11111
Q ss_pred ---------cCCCCCccccccCCCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCCC-CCCCcEEE
Q psy7164 177 ---------SNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGS-KDDFTKIT 246 (2307)
Q Consensus 177 ---------~nfd~~~yk~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~~-~~~GT~Vt 246 (2307)
.+-.++.|++||||||||+|||||||+||+|+|++ +|+.|.|.|++|++..+..++ +++ +++||+|+
T Consensus 227 ~~~~~~~~~~~~~~~~YkvSGGLHGVG~SVVNALS~~l~VeV~R--dGK~y~q~F~rG~~v~pLkvi-g~~~~~tGT~Vt 303 (903)
T PTZ00109 227 HVKGPKEAKEKESSQMYEYSSGLHGVGLSVVNALSSFLKVDVFK--GGKIYSIELSKGKVTKPLSVF-SCPLKKRGTTIH 303 (903)
T ss_pred cccccccccccccCCcceecCcCCCcceeeeeeccCeEEEEEEE--CCEEEEEEeCCCcccCCcccc-CCcCCCCceEEE
Confidence 11122479999999999999999999999999985 799999999999986654444 444 67999999
Q ss_pred EEeC-cccccc-cc-------------cCHHHHHHHHHHHHHhhccCCCcEEEeccccCC-------------ccchHHH
Q psy7164 247 FTPD-LTKFKM-TS-------------LDKDMVDLITRRAYDAAASTKDVKVFLNGEKLP-------------VKNFQDY 298 (2307)
Q Consensus 247 F~PD-~~iF~~-~~-------------f~~d~l~~l~~Rl~dlA~LnpGLkI~lnder~~-------------~~G~~dY 298 (2307)
|+|| ++||++ .. |++++|. +|++++|||||||+|+|+|+|.. .+|+.+|
T Consensus 304 F~PD~~~IF~~~~~~~~~~~~~~~~~~F~~d~L~---~RLrElAfLNpGL~I~L~DeR~~~~~~~~~~e~f~~egGi~df 380 (903)
T PTZ00109 304 FLPDYKHIFKTHHQHTETEEEEGCKNGFNLDLIK---NRIHELSYLNPGLTFYLVDERIANENNFYPYETIKHEGGTREF 380 (903)
T ss_pred EEeCcchhcCccccccccccccccccccCHHHHH---HHHHHHhccCCCcEEEEEecCccccCCcceEEEEEecCCHHHH
Confidence 9999 999976 32 8888875 99999999999999999999842 1599999
Q ss_pred HHHHhcc-CCCCCC--CeEEEEEecCCeeEEEEeecCCCce--EEEeeCCccCCCCcchhhHHHHHHHHHHHHHHHHhcc
Q psy7164 299 VKLYTDR-QDEDGD--PVKIIYENVNPRWEVAIAPSDRGFQ--QVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNK 373 (2307)
Q Consensus 299 V~~~~~~-~~~~~~--~~~ii~e~~~~~~EVAl~~s~~~y~--~~SFVNnI~T~eGGTHvdgfr~aLtr~i~~~~kkk~k 373 (2307)
|++++.. ...+.+ ++++..+.+++.|||||+|++++|+ ++||||+|+|+ ||||++||++||+++|++|++++++
T Consensus 381 v~~ln~~k~~l~~~~~~I~~~g~~~~i~VEVAlq~s~~~y~e~i~SFVNnI~T~-GGTHv~Gfr~ALTr~In~y~kk~~l 459 (903)
T PTZ00109 381 LEELIKDKTPLYKDINIISIRGVIKNVNVEVSLSWSLESYTALIKSFANNVSTT-AGTHIDGFKYAITRCVNGNIKKNGY 459 (903)
T ss_pred HHHhcCCCCccCCCCceEEEEeeecCeEEEEEEEecCCCCceEEEEEECCccCC-CCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 9998732 222222 3333334457789999999864664 69999999999 9999999999999999999988764
Q ss_pred ccccceeeccccccccccchhhhhcccccccccccccccCChHhHhcceEEEEEeecCCCcccchhhhhhhccc------
Q psy7164 374 DLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK------ 447 (2307)
Q Consensus 374 ~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~dvreg~~~vk~~dIre~L~~~Vsvki~nP~FegQTKekL~~~~------ 447 (2307)
+|++ ...|+++|||+||++||||+|+||+|+||||+||++..
T Consensus 460 ----------------lK~k----------------~~~i~gedIREGLtavISvki~~PqFeGQTK~KLgn~~vk~~ve 507 (903)
T PTZ00109 460 ----------------FKGN----------------FVNIPGEFIREGMTAIISVKLNGAEFDGQTKTKLGNHLLKTILE 507 (903)
T ss_pred ----------------cccc----------------CCCCCHHHHhhccEEEEEEeccCCcccCcccccccCHHHHHHHH
Confidence 2221 14688999999999999999999999999999997410
Q ss_pred --------------------------------------c-------cc-cccccc-ccccccccCCCCCCCcEEEEEecC
Q psy7164 448 --------------------------------------G-------SF-GSTCVP-KLEDANDAGTKNSIDCTLILTEGD 480 (2307)
Q Consensus 448 --------------------------------------~-------~~-~~k~lp-KL~Dc~~a~tk~~~~ceLfIvEGD 480 (2307)
+ .. ....+| ||+||+ ++++++|||||||||
T Consensus 508 ~iv~e~L~~~l~~np~~a~~I~~Ka~~a~~AreaAk~arel~R~K~~~~~~~~lPgKL~DC~---s~d~~~~ELfIVEGD 584 (903)
T PTZ00109 508 SIVFEQLSEILEFEPNLLLAIYNKSLAAKKAFEEAKAAKDLIRQKNNQYYSTILPGKLVDCI---SDDIERNELFIVEGE 584 (903)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhhcccccCCCCCcccccc---cCCCcccEEEEEccc
Confidence 0 00 001144 999996 689999999999999
Q ss_pred ccchhcccCcccccccc--eeeccCCcccchhhccc-hHHHhhcHHHHHHHHHhccccCCCcCCcCCC------------
Q psy7164 481 SAKSLAVSGLGVVGRDK--YGVFPLRGKLLNVREAT-HKQILENAEINNLVKILGLQYSKKYTTVEDM------------ 545 (2307)
Q Consensus 481 SA~~~a~sGsak~gRD~--qaIlPLRGKiLNV~ka~-~~ki~~N~EI~~Li~aLGlg~~~~y~~~~d~------------ 545 (2307)
||| ||||||||| |||||||||||||||++ .+||++|+||++||+||||+++++|...||+
T Consensus 585 SAg-----GSAKqgRdR~~QAILPLRGKILNVeka~~~~kil~N~EI~~Li~alG~gig~~~~~~~dl~~~~~~~~~~~~ 659 (903)
T PTZ00109 585 SAA-----GNAKQARNREFQAVLPLKGKILNIEKIKNNKKVFENSEIKLLITSIGLSVNPVTWRQYDLSHGTKASKDESV 659 (903)
T ss_pred CCC-----cccccccCccceeecccCCceehhcccccHHHHHhcHHHHHHHHHhCCCCCcccccccCccccccccccccc
Confidence 998 788899996 99999999999999995 9999999999999999999999866555777
Q ss_pred ----------------CCCCCCcEEecccCCCCCCchhHHHHHHHHHhhhhhhcCCcEEEecCcEEEEEeC---------
Q psy7164 546 ----------------KTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKA--------- 600 (2307)
Q Consensus 546 ----------------~~LRYgkIiImTDaDvDG~HI~~LLltff~r~~p~Li~~G~vy~~~tPL~kv~~g--------- 600 (2307)
++||||||||||||||||+|||+|||||||||||+||++||||+|+||||||++|
T Consensus 660 ~~~~~~~~~~~~~~~~~~LRYgKIIIMTDADVDGsHIrtLLLTff~r~~p~Lie~G~vyia~pPLyki~~~~~~~~~~~~ 739 (903)
T PTZ00109 660 QNNNSTLTKKKNSLFDTPLRYGKIILLTDADVDGEHLRILLLTLLYRFCPSLYEHGRVYVACPPLYRITNNRMKQFNVST 739 (903)
T ss_pred ccccccccccccccccccCCcCeEEEEeCCCCChhHHHHHHHHHHHHhCHHhhhCCEEEEecCCEEEEEecCcccccccc
Confidence 9999999999999999999999999999999999999999999999999999985
Q ss_pred ---CeEEEEeChHHHHHHHHHh
Q psy7164 601 ---REELSFYSLPEFEEWKEET 619 (2307)
Q Consensus 601 ---k~~~~fys~~e~~~~~~~~ 619 (2307)
|+..|+||+.|++++++++
T Consensus 740 ~~~k~~~y~~sd~el~~~~~~~ 761 (903)
T PTZ00109 740 KNSKKYIYTWSDEELNVLIKLL 761 (903)
T ss_pred cccceeEEeCCHHHHHHHHHHh
Confidence 6788999999999998765
No 7
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=100.00 E-value=9.6e-134 Score=1286.58 Aligned_cols=497 Identities=37% Similarity=0.571 Sum_probs=443.1
Q ss_pred hhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccC--CCCCeEEEE
Q psy7164 34 KIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRD--PKMNCIKIT 111 (2307)
Q Consensus 34 ~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~--g~~~~I~V~ 111 (2307)
+.||+|+++||||+||+|||||+++.++.+|+|+. +++++|+||||||||||||||+||++|+ |+|+.|+|+
T Consensus 2 ~~i~~L~~lE~Vr~RPgmYIGs~~~~~~~~~~~~~------~~~~~~~~GL~hi~~EIldNavDe~~~~~~g~~~~I~V~ 75 (602)
T PHA02569 2 DEFKVLSDREHILKRPGMYIGSVAYEAHERFLFGK------FTQVEYVPGLVKIIDEIIDNSVDEAIRTNFKFANKIDVT 75 (602)
T ss_pred CceeEccchHHHhcCCCceeCCCCcccccceeecc------cccccccccceeeeehhhhhhhhhhhccCCCCCcEEEEE
Confidence 46899999999999999999999999999999973 6899999999999999999999999863 689999999
Q ss_pred EEccCCeEEEEeCCCCcccccccC-CC--ccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCcccccc
Q psy7164 112 VNQETNTISVWNNGKGIPVVEHKD-EK--MFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTG 188 (2307)
Q Consensus 112 i~~d~gsIsV~DnGrGIPvd~~~~-~~--~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sg 188 (2307)
|+ ||+|+|+||||||||++|++ +| +|+||+|||+|||| |||| +.|++||
T Consensus 76 i~--dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaG-------------------------gkFd-~~ykvSG 127 (602)
T PHA02569 76 IK--NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAG-------------------------SNFD-DTNRVTG 127 (602)
T ss_pred Ec--CCEEEEEECCCcccCCcccccccccccceEEEEEeeccc-------------------------cccC-CcceeeC
Confidence 99 69999999999999999986 56 88889999999999 9994 6799999
Q ss_pred CCCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCCCCCCCcEEEEEeCcccccccccCHHHHHHHH
Q psy7164 189 GRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268 (2307)
Q Consensus 189 GlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~~~~~GT~VtF~PD~~iF~~~~f~~d~l~~l~ 268 (2307)
||||||+|||||||+||+|++++ +++.|.|.|++||+..+.+ + +.++++||+|+|+||++||++..|+.+...+|.
T Consensus 128 GlhGVG~svvNaLS~~~~V~v~~--~~~~~~q~f~~G~~~~~~~-~-~~~~~~GT~V~F~PD~~iF~~~~~~~~~~~~l~ 203 (602)
T PHA02569 128 GMNGVGSSLTNFFSVLFIGETCD--GKNEVTVNCSNGAENISWS-T-KPGKGKGTSVTFIPDFSHFEVNGLDQQYLDIIL 203 (602)
T ss_pred CcCCccceeeeccchhhheEEEc--CCEEEEEEecCCcccCCcc-c-CCCCCCccEEEEEECHHHhCCCccCccHHHHHH
Confidence 99999999999999999999964 6888999999999766543 3 334679999999999999998889876666778
Q ss_pred HHHHHhhccCCCcEEEeccccCCccchHHHHHHHhccCCCCCCCeEEEEEecCCeeEEEEeecCCCceEEEeeCCccCCC
Q psy7164 269 RRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTK 348 (2307)
Q Consensus 269 ~Rl~dlA~LnpGLkI~lnder~~~~G~~dYV~~~~~~~~~~~~~~~ii~e~~~~~~EVAl~~s~~~y~~~SFVNnI~T~e 348 (2307)
+|++++|||||||+|+|+|+|.. +||++||+++.. +++ +++ +.+||||++|++++|+++||||||+|++
T Consensus 204 ~Rl~elA~Ln~Gl~I~l~der~~-~g~~~yv~~~~~------~~i--~~~--~~~veva~~~~~~~~~~~SFvN~I~T~~ 272 (602)
T PHA02569 204 DRLQTLAVVFPDIKFTFNGKKVS-GKFKKYAKQFGD------DTI--VQE--NDNVSIALAPSPDGFRQLSFVNGLHTKN 272 (602)
T ss_pred HHHHHHhcCCCCCEEEEEecCCC-CCHHHHHHHhCC------CCe--EEe--cCcEEEEEEecCCCcEEEEEECcccCCC
Confidence 99999999999999999999965 699999999842 233 333 4589999999955788899999999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHhccccccceeeccccccccccchhhhhcccccccccccccccCChHhHhcceEEEEEe
Q psy7164 349 GGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINC 428 (2307)
Q Consensus 349 GGTHvdgfr~aLtr~i~~~~kkk~k~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~dvreg~~~vk~~dIre~L~~~Vsv 428 (2307)
||||++||+++|+++|++|++++++ ..++++|||+||++||+|
T Consensus 273 GGTHv~gf~~altr~in~~~~kk~~-------------------------------------~~l~~~diregL~avVsv 315 (602)
T PHA02569 273 GGHHVDCVMDDICEELIPMIKKKHK-------------------------------------IEVTKARVKECLTIVLFV 315 (602)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhccc-------------------------------------CCCCHHHHHhCCEEEEEE
Confidence 9999999999999999999976432 246789999999999999
Q ss_pred e-cCCCcccchhhhhhhcccccccc----------------------------------------c--------cccccc
Q psy7164 429 L-IVNPTFDSQTKENMTLQKGSFGS----------------------------------------T--------CVPKLE 459 (2307)
Q Consensus 429 k-i~nP~FegQTKekL~~~~~~~~~----------------------------------------k--------~lpKL~ 459 (2307)
+ ++||+|+||||++|++....+++ + -.|||.
T Consensus 316 k~i~~P~FegQTK~kL~~~~~~~~~~v~~~~~~l~~~l~~n~~~~~~i~~~a~~~~~ar~a~~~~k~~k~~~r~k~~~~~ 395 (602)
T PHA02569 316 RNMSNPRFDSQTKERLTSPFGEIRNHIDLDYKKIAKQILKTEAIIMPIIEAALARKLAAEKAAETKAAKKAKKAKVAKHI 395 (602)
T ss_pred eccCCCcccCcccccccCChHHhccceeehHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccc
Confidence 8 99999999999999875211110 0 045666
Q ss_pred cccccCCCCCCCcEEEEEecCccchhcccCcccccccc--eeeccCCcccchhhccchHHHhhcHHHHHHHHHhccccCC
Q psy7164 460 DANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSK 537 (2307)
Q Consensus 460 Dc~~a~tk~~~~ceLfIvEGDSA~~~a~sGsak~gRD~--qaIlPLRGKiLNV~ka~~~ki~~N~EI~~Li~aLGlg~~~ 537 (2307)
+++.+|. +++|||||||||||| |||++|||| |||||||||||||+||+.+||++|+||++||+|||||+|+
T Consensus 396 ~a~lpGk--~~~~eL~ivEGDSAg-----gsAk~~RdR~~qaIlPLRGKiLNV~ka~~~ki~~N~Ei~~li~alG~g~g~ 468 (602)
T PHA02569 396 KANLIGK--DAETTLFLTEGDSAI-----GYLIEVRDEELHGGYPLRGKVLNTWGMSYADILKNKELFDICAITGLVLGE 468 (602)
T ss_pred cCCCCCC--CCCceEEEEecCCCC-----cccccccCccceeecccCCcccchhhCCHHHhhcchhHHHHHHHhCCCcCc
Confidence 7777665 889999999999999 666788885 9999999999999999999999999999999999999997
Q ss_pred CcCCcCCCCCCCCCcEEecccCCCCC-CchhHHHHHHHHHhhhhhhcCCcEEEecCcEEEEEeCCeEEEEeChHHHHHHH
Q psy7164 538 KYTTVEDMKTLRYGRLMIMTDQDQDG-SHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWK 616 (2307)
Q Consensus 538 ~y~~~~d~~~LRYgkIiImTDaDvDG-~HI~~LLltff~r~~p~Li~~G~vy~~~tPL~kv~~gk~~~~fys~~e~~~~~ 616 (2307)
+| ++|||||||||||||||| +|||||||||||| ||+||+.||||+|+||||||++||+++||||++||++|+
T Consensus 469 ~~------~~LRY~kIiImTDADvDG~sHIr~LLltff~~-~p~Li~~G~v~~~~~Pl~kv~~gk~~~~~~~~~e~~~~~ 541 (602)
T PHA02569 469 KA------ENMNYKNIAIMTDADVDGKGSIYPLLLAFFSR-WPELFEQGRIRFVKTPVIIAQVGKETKWFYSLDEFEKAK 541 (602)
T ss_pred cc------cccccCcEEEEecCCCcchHHHHHHHHHHHHh-chhhccCCeEEEecCCEEEEEcCCeeEEecCHHHHHHHH
Confidence 65 389999999999999999 9999999999999 999999999999999999999999999999999999999
Q ss_pred HHhcCCCccCcEEeccc
Q psy7164 617 EETTNWHTYKIKYYKVV 633 (2307)
Q Consensus 617 ~~~~~~~~~~ikryKGL 633 (2307)
+++ ++|+|||||||
T Consensus 542 ~~~---~~~~i~~yKGL 555 (602)
T PHA02569 542 DSL---KKWSIRYIKGL 555 (602)
T ss_pred Hhc---CCcceEEeccC
Confidence 855 47999999999
No 8
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=100.00 E-value=7.5e-133 Score=1284.97 Aligned_cols=512 Identities=27% Similarity=0.393 Sum_probs=449.8
Q ss_pred CChhhhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeEE
Q psy7164 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIK 109 (2307)
Q Consensus 30 ~~~~~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I~ 109 (2307)
++. ..+|+|+++||||+||||||||+++ +||||||+||||||+||++ +|+|+.|+
T Consensus 5 Y~~-~~i~~L~glE~VRkRPgMYIGst~~-----------------------~GL~hlv~EIvdNavDE~~-ag~~~~I~ 59 (637)
T TIGR01058 5 YNA-DAIKILEGLDAVRKRPGMYIGSTDS-----------------------KGLHHLVWEIVDNSVDEVL-AGYADNIT 59 (637)
T ss_pred cCH-HHCeeecccHHHhcCCCCeECCCCc-----------------------chhheehhhhhcchhhhhh-cCCCcEEE
Confidence 555 5789999999999999999999984 8999999999999999997 79999999
Q ss_pred EEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCccccccC
Q psy7164 110 ITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGG 189 (2307)
Q Consensus 110 V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgG 189 (2307)
|+|+. ||+|+|+|||||||+++|+++++|++|+|||+|||| ||||+++|++|||
T Consensus 60 V~i~~-dgsitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaG-------------------------gkfd~~~ykvSGG 113 (637)
T TIGR01058 60 VTLHK-DNSITVQDDGRGIPTGIHQDGNISTVETVFTVLHAG-------------------------GKFDQGGYKTAGG 113 (637)
T ss_pred EEEcC-CCeEEEEECCCcccCcccCcCCCccceeEEEEeccc-------------------------CcCCCCcccccCC
Confidence 99997 689999999999999999999999999999999999 9999999999999
Q ss_pred CCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCCCCCCCcEEEEEeCcccccccccCHHHHHHHHH
Q psy7164 190 RNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR 269 (2307)
Q Consensus 190 lhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~~~~~GT~VtF~PD~~iF~~~~f~~d~l~~l~~ 269 (2307)
+||||+|||||||+||+|+|++ +|+.|.|.|++|+....++.+.+.+.++||+|+|+||++||++..|++++|. +
T Consensus 114 lhGvG~svvNAlS~~~~V~v~r--~gk~~~q~f~~Gg~~~~~l~~~~~~~~~GT~V~F~PD~~iF~~~~f~~d~l~---~ 188 (637)
T TIGR01058 114 LHGVGASVVNALSSWLEVTVKR--DGQIYQQRFENGGKIVQSLKKIGTTKKTGTLVHFHPDPTIFKTTQFNSNIIK---E 188 (637)
T ss_pred cccccccccceeeceEEEEEEE--CCEEEEEEEecCCcCcCCcccccCCCCCceEEEEEeCHHHcCCCccCHHHHH---H
Confidence 9999999999999999999974 8999999999985445554444445689999999999999998999999875 9
Q ss_pred HHHHhhccCCCcEEEeccccCCc-------cchHHHHHHHhccCCCCCCCeEEEEEecCCeeEEEEeecCCCc--eEEEe
Q psy7164 270 RAYDAAASTKDVKVFLNGEKLPV-------KNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF--QQVSF 340 (2307)
Q Consensus 270 Rl~dlA~LnpGLkI~lnder~~~-------~G~~dYV~~~~~~~~~~~~~~~ii~e~~~~~~EVAl~~s~~~y--~~~SF 340 (2307)
|++++|||||||+|+|+|+|... +||++||++++.......+++.+..+.++..|||||+|++ +| +++||
T Consensus 189 RlrelA~Ln~GL~I~l~der~~~~~~f~~~~Gl~~yv~~l~~~k~~l~~~i~~~~~~~~~~vevAl~~~~-~~~e~~~SF 267 (637)
T TIGR01058 189 RLKESAFLLKKLKLTFTDKRTNKTTVFFYENGLVDFVDYINETKETLSQVTYFEGEKNGIEVEVAFQFND-GDSENILSF 267 (637)
T ss_pred HHHHHhccCCCcEEEEEecCCCceEEEEcCcCHHHHHHHhcCCCCcCCccEEEEEEECCcEEEEEEEEcC-CCCeEEEEe
Confidence 99999999999999999998543 7999999998732221123444433445778999999997 55 57999
Q ss_pred eCCccCCCCcchhhHHHHHHHHHHHHHHHHhccccccceeeccccccccccchhhhhcccccccccccccccCChHhHhc
Q psy7164 341 VNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKN 420 (2307)
Q Consensus 341 VNnI~T~eGGTHvdgfr~aLtr~i~~~~kkk~k~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~dvreg~~~vk~~dIre 420 (2307)
||||+|++||||++||++||+++|++|+++++. +|+. ...++++|||+
T Consensus 268 vN~I~T~~GGTHv~g~~~aLtr~in~~~~~~~~----------------lK~~----------------~~~i~~~dire 315 (637)
T TIGR01058 268 ANSVKTKEGGTHENGFKLAITDVINSYARKYNL----------------LKEK----------------DKNLEGSDIRE 315 (637)
T ss_pred ECCccCCCCCcHHHHHHHHHHHHHHHHHHHhch----------------hccc----------------cccCChhhHhh
Confidence 999999999999999999999999999987754 2221 13578899999
Q ss_pred ceEEEEEeecCCC--cccchhhhhhhccccc-------------------------------------------------
Q psy7164 421 HIWIFINCLIVNP--TFDSQTKENMTLQKGS------------------------------------------------- 449 (2307)
Q Consensus 421 ~L~~~Vsvki~nP--~FegQTKekL~~~~~~------------------------------------------------- 449 (2307)
||++||+|++++| +|+||||++|++....
T Consensus 316 gL~~vIsvki~~pnP~FegQTK~kL~n~~v~~~v~~~v~e~l~~~l~~np~~a~~Iiek~~~~a~aR~aa~~ar~~~r~~ 395 (637)
T TIGR01058 316 GLSAIISVRIPEELIQFEGQTKSKLFSPEARNVVDEIVQDHLFFFLEENNNDAKLLIDKAIKARDAKEAAKKAREEKKSG 395 (637)
T ss_pred ccEEEEEEecCCCcccccCcccccccChhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999755 9999999999742000
Q ss_pred ---cccc-c-ccccccccccCCCCCCCcEEEEEecCccchhcccCcccccccc--eeeccCCcccchhhccchHHHhhcH
Q psy7164 450 ---FGST-C-VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPLRGKLLNVREATHKQILENA 522 (2307)
Q Consensus 450 ---~~~k-~-lpKL~Dc~~a~tk~~~~ceLfIvEGDSA~~~a~sGsak~gRD~--qaIlPLRGKiLNV~ka~~~ki~~N~ 522 (2307)
..+. . ++||+|| +++++++|||||||||||| ||||+|||+ |||||||||||||++++.+||++|+
T Consensus 396 ~k~~~~~~~lpgKL~dc---~~~~~~~~eLfivEGDSAg-----gsak~gRdr~~qailPLRGKiLNv~ka~~~ki~~N~ 467 (637)
T TIGR01058 396 KKPKKEKGILSGKLTPA---QSKNPAKNELFLVEGDSAG-----GSAKQGRDRKFQAILPLRGKVLNVEKAKLADILKNE 467 (637)
T ss_pred cccccccCCCCcccccc---cCCCCCccEEEEEecCccc-----cccccccccceEEEeccCCcccccccCCHHHHhcch
Confidence 0001 1 4699998 5789999999999999999 788999997 9999999999999999999999999
Q ss_pred HHHHHHHHhccccCCCcCCcCCCCCCCCCcEEecccCCCCCCchhHHHHHHHHHhhhhhhcCCcEEEecCcEEEEEeC--
Q psy7164 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKA-- 600 (2307)
Q Consensus 523 EI~~Li~aLGlg~~~~y~~~~d~~~LRYgkIiImTDaDvDG~HI~~LLltff~r~~p~Li~~G~vy~~~tPL~kv~~g-- 600 (2307)
||++|++||||+++++ ||+++||||||||||||||||+|||||||||||||||+||++||||+|+||||||++|
T Consensus 468 Ei~~l~~alG~~~g~~----~~~~~LRY~kIiImTDADvDGsHIr~LLltff~r~~p~Li~~G~v~~~~~Pl~kv~~~~~ 543 (637)
T TIGR01058 468 EINTIIFCIGTGIGAD----FSIKDLKYDKIIIMTDADTDGAHIQVLLLTFFYRYMRPLIELGHVYIALPPLYKLSKKDG 543 (637)
T ss_pred HHHHHHHHhCCCcCcc----CCccccccceEEEEeCCCCCcchhHHHHHHHHHHhCHhhccCCeEEEecCCEEEEEeCCC
Confidence 9999999999999975 5899999999999999999999999999999999999999999999999999999985
Q ss_pred CeEEEEeChHHHHHHHHHhcCCCccCcEEeccc----------ccCc-----eeeeecCC
Q psy7164 601 REELSFYSLPEFEEWKEETTNWHTYKIKYYKVV----------YVTG-----VLLFKMNL 645 (2307)
Q Consensus 601 k~~~~fys~~e~~~~~~~~~~~~~~~ikryKGL----------yf~~-----l~~f~~~~ 645 (2307)
++..|+||++||++|+++. ++|+||||||| ||.+ |+.+...|
T Consensus 544 ~~~~y~~~~~e~~~~~~~~---~~~~i~ryKGLGem~~~~l~ettm~p~~r~l~~v~~~d 600 (637)
T TIGR01058 544 KKVKYAWSDLELESVKKKL---KNYTLQRYKGLGEMNADQLWETTMNPETRTLVRVKIDD 600 (637)
T ss_pred ceEEEeCCHHHHHHHHHhc---CCCCceEECchhhhhHHHHHHHhhCcccceeeEEehhh
Confidence 5678999999999999864 47999999999 7753 77776655
No 9
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=100.00 E-value=5.9e-129 Score=1254.41 Aligned_cols=504 Identities=25% Similarity=0.376 Sum_probs=446.3
Q ss_pred CCChhhhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeE
Q psy7164 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCI 108 (2307)
Q Consensus 29 ~~~~~~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I 108 (2307)
.++. ..|++|+|+||||+|||||||||+. .+||||+|+||||||+||++ +|+|+.|
T Consensus 6 ~Y~a-~~i~vL~gle~VRkRPgMYIGst~~----------------------~~GLhhlv~EivdNaiDE~~-AG~a~~I 61 (756)
T PRK14939 6 SYGA-SSIKVLKGLDAVRKRPGMYIGDTDD----------------------GTGLHHMVYEVVDNAIDEAL-AGHCDDI 61 (756)
T ss_pred CCCH-HHCeEecccHHHhcCCCCeeCCCCC----------------------CcchhhhhhHhhcccccccc-cCCCCEE
Confidence 3666 5789999999999999999999984 17999999999999999998 7999999
Q ss_pred EEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCcccccc
Q psy7164 109 KITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTG 188 (2307)
Q Consensus 109 ~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sg 188 (2307)
.|+|+. ||+|+|+|||||||+++|+++|+|++|+|||+|||| ||||++.|++||
T Consensus 62 ~V~i~~-dgsIsV~DnGrGIPvd~h~~~g~~~~Elvlt~lhAg-------------------------gKfd~~~ykvSg 115 (756)
T PRK14939 62 TVTIHA-DGSVSVSDNGRGIPTDIHPEEGVSAAEVIMTVLHAG-------------------------GKFDQNSYKVSG 115 (756)
T ss_pred EEEEcC-CCeEEEEEcCCcccCCcccccCCchhhheeeeeccc-------------------------CCCCCCcccccC
Confidence 999998 589999999999999999999999999999999999 999999999999
Q ss_pred CCCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCCCCCCCcEEEEEeCcccccccccCHHHHHHHH
Q psy7164 189 GRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268 (2307)
Q Consensus 189 GlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~~~~~GT~VtF~PD~~iF~~~~f~~d~l~~l~ 268 (2307)
|+||||+++|||||+||+|++++ +|+.|+|.|++|++..+...++. +.++||+|+|+||+++|++..|++++|.
T Consensus 116 GlhGvG~svvNAlS~~l~v~v~r--~gk~~~q~f~~G~~~~~l~~~g~-~~~~GT~V~F~PD~~iF~~~~~~~~~i~--- 189 (756)
T PRK14939 116 GLHGVGVSVVNALSEWLELTIRR--DGKIHEQEFEHGVPVAPLKVVGE-TDKTGTEVRFWPSPEIFENTEFDYDILA--- 189 (756)
T ss_pred CccCccceEeehccCeEEEEEEe--CCeEEEEEEecCccccCccccCC-cCCCCcEEEEEECHHHcCCcccCHHHHH---
Confidence 99999999999999999999974 78999999999998665555543 4679999999999999988899999875
Q ss_pred HHHHHhhccCCCcEEEeccccCC-------ccchHHHHHHHhcc-CCCCCCCeEEEEEecCCeeEEEEeecCCCce--EE
Q psy7164 269 RRAYDAAASTKDVKVFLNGEKLP-------VKNFQDYVKLYTDR-QDEDGDPVKIIYENVNPRWEVAIAPSDRGFQ--QV 338 (2307)
Q Consensus 269 ~Rl~dlA~LnpGLkI~lnder~~-------~~G~~dYV~~~~~~-~~~~~~~~~ii~e~~~~~~EVAl~~s~~~y~--~~ 338 (2307)
+|++++|||||||+|+|+|+|.+ .+|+.+|+++++.. ...+.+++++..+.++..|||||+|++ +|+ ++
T Consensus 190 ~rl~elA~lnpgl~i~l~der~~~~~~f~~egGi~~fv~~l~~~~~~~~~~~i~~~~~~~~~~veval~~~~-~~~e~~~ 268 (756)
T PRK14939 190 KRLRELAFLNSGVRIRLKDERDGKEEEFHYEGGIKAFVEYLNRNKTPLHPNIFYFSGEKDGIGVEVALQWND-SYQENVL 268 (756)
T ss_pred HHHHHHhhcCCCCEEEEeccCCCceeEEEeCChHHHHHHHHhcCCCcCCCCceEEEeeeCCeEEEEEEEEcC-CCceeEE
Confidence 99999999999999999999854 26999999998732 223334554444445678999999997 664 59
Q ss_pred EeeCCccCCCCcchhhHHHHHHHHHHHHHHHHhccccccceeeccccccccccchhhhhcccccccccccccccCChHhH
Q psy7164 339 SFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQV 418 (2307)
Q Consensus 339 SFVNnI~T~eGGTHvdgfr~aLtr~i~~~~kkk~k~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~dvreg~~~vk~~dI 418 (2307)
||||||+|.+||||++||++||+++|++|+++++. +|+. ...++++||
T Consensus 269 SFvN~I~T~~GGTHv~gf~~altr~in~y~~~~~l----------------~K~~----------------~~~l~~~di 316 (756)
T PRK14939 269 CFTNNIPQRDGGTHLAGFRAALTRTINNYIEKEGL----------------AKKA----------------KVSLTGDDA 316 (756)
T ss_pred EEECcccCCCCCCHHHHHHHHHHHHHHHHHHHhCc----------------cccc----------------CCCCCHhHH
Confidence 99999999999999999999999999999987653 1221 145789999
Q ss_pred hcceEEEEEeecCCCcccchhhhhhhccc-c---------c--------------c------------------------
Q psy7164 419 KNHIWIFINCLIVNPTFDSQTKENMTLQK-G---------S--------------F------------------------ 450 (2307)
Q Consensus 419 re~L~~~Vsvki~nP~FegQTKekL~~~~-~---------~--------------~------------------------ 450 (2307)
|+||++||||+++||+|+||||++|++.. + . +
T Consensus 317 regl~~vvsvki~~P~FegQTK~kL~n~ev~~~v~~~v~e~l~~~l~~np~~a~~ii~k~~~aa~aR~aa~kar~~~rrK 396 (756)
T PRK14939 317 REGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPAVESLVNEKLSEFLEENPNEAKIIVGKIIDAARAREAARKARELTRRK 396 (756)
T ss_pred hhceEEEEEEecCCCcccCchhccccCHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999997520 0 0 0
Q ss_pred ---cccccc-ccccccccCCCCCCCcEEEEEecCccchhcccCcccccccc--eeeccCCcccchhhccchHHHhhcHHH
Q psy7164 451 ---GSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPLRGKLLNVREATHKQILENAEI 524 (2307)
Q Consensus 451 ---~~k~lp-KL~Dc~~a~tk~~~~ceLfIvEGDSA~~~a~sGsak~gRD~--qaIlPLRGKiLNV~ka~~~ki~~N~EI 524 (2307)
....+| ||+|| ++++|++|||||||||||| ||||||||+ |||||||||||||+|++.+||++|+||
T Consensus 397 ~~~~~~~lpgKL~Dc---~~~d~~~~eLfivEGDSAg-----GsAk~gRdr~~qailPLRGKiLNveka~~~kil~N~Ei 468 (756)
T PRK14939 397 GALDIAGLPGKLADC---QEKDPALSELYLVEGDSAG-----GSAKQGRDRKFQAILPLKGKILNVEKARFDKMLSSQEI 468 (756)
T ss_pred cccccCCCCCCcccc---ccCCCCceEEEEEeCCCCc-----cccccccCccceeccccCCccchhccCCHHHHhcCHHH
Confidence 000156 99999 4789999999999999999 788999997 999999999999999999999999999
Q ss_pred HHHHHHhccccCCCcCCcCCCCCCCCCcEEecccCCCCCCchhHHHHHHHHHhhhhhhcCCcEEEecCcEEEEEeCCeEE
Q psy7164 525 NNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREEL 604 (2307)
Q Consensus 525 ~~Li~aLGlg~~~~y~~~~d~~~LRYgkIiImTDaDvDG~HI~~LLltff~r~~p~Li~~G~vy~~~tPL~kv~~gk~~~ 604 (2307)
++||+|||||+|++ .||+++||||||||||||||||+|||||||||||||||+||+.||||+|+||||||++||++.
T Consensus 469 ~~li~alG~gig~~---~fd~~~LRY~kIiIMTDADvDGsHIrtLLltff~r~~p~Lie~G~vyia~pPLykv~~gk~~~ 545 (756)
T PRK14939 469 GTLITALGCGIGRD---EFNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHLYIAQPPLYKVKKGKQEQ 545 (756)
T ss_pred HHHHHHhCCCCCcc---cCChhhCCcCeEEEEcCCCCCchHHHHHHHHHHHHhChhhccCCeEEEecCcEEEEecCCeeE
Confidence 99999999999853 279999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeChHHHHHHHHHhcC-C------CccCcEEeccc
Q psy7164 605 SFYSLPEFEEWKEETTN-W------HTYKIKYYKVV 633 (2307)
Q Consensus 605 ~fys~~e~~~~~~~~~~-~------~~~~ikryKGL 633 (2307)
||||++||++|+.+++. . .++.|+| |||
T Consensus 546 y~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~-~~l 580 (756)
T PRK14939 546 YLKDDEALDDYLIELALEGATLHLADGPAISG-EAL 580 (756)
T ss_pred ecCCHHHHHHHHHHhCcCCceeecCCCCcccH-HHH
Confidence 99999999999988642 1 4578999 999
No 10
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=100.00 E-value=3.7e-126 Score=1228.87 Aligned_cols=518 Identities=25% Similarity=0.408 Sum_probs=453.7
Q ss_pred CCCCChhhhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCC
Q psy7164 27 ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMN 106 (2307)
Q Consensus 27 ~~~~~~~~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~ 106 (2307)
+..++. ..|++|+++||||+||+|||||++. +||+|+|+|||+||+||++ +|+|+
T Consensus 5 ~~~y~~-~~i~~L~~lE~VrkRP~mYiGs~~~-----------------------~gl~~lv~EivdNaiDe~~-ag~a~ 59 (631)
T PRK05559 5 TNNYNA-DSIEVLEGLEPVRKRPGMYIGSTDT-----------------------RGLHHLVQEVIDNSVDEAL-AGHGK 59 (631)
T ss_pred cCCCCH-HHCeeccchHHHhcCCCceeCCCCC-----------------------chhhhhhhhhhccccchhh-cCCCC
Confidence 344776 5789999999999999999999983 7999999999999999997 58999
Q ss_pred eEEEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCcccc
Q psy7164 107 CIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKV 186 (2307)
Q Consensus 107 ~I~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~ 186 (2307)
.|.|+|+. +|+|+|+|||||||+++|+.+|+|+||+|||+|||| |||++..|++
T Consensus 60 ~I~V~i~~-dg~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhag-------------------------sKf~~~~yk~ 113 (631)
T PRK05559 60 RIEVTLHA-DGSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAG-------------------------GKFSNKAYKF 113 (631)
T ss_pred EEEEEEeC-CCcEEEEEcCCCCCcccccccCCcchheeeeecccc-------------------------CccCCccccc
Confidence 99999998 489999999999999999999999999999999999 9999999999
Q ss_pred ccCCCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCCC-CCCCcEEEEEeCcccccccccCHHHHH
Q psy7164 187 TGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGS-KDDFTKITFTPDLTKFKMTSLDKDMVD 265 (2307)
Q Consensus 187 sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~~-~~~GT~VtF~PD~~iF~~~~f~~d~l~ 265 (2307)
|||+||||+++|||||++|+|++++ +|+.|.|.|++|++..+.+.++.+. ..+||+|+|+||+++|++..|+++.+.
T Consensus 114 SgGl~GvGls~vNalS~~l~V~s~r--~g~~~~~~f~~G~~~~~l~~~~~~~~~~~GT~V~f~PD~~iF~~~~~~~~~i~ 191 (631)
T PRK05559 114 SGGLHGVGVSVVNALSSRLEVEVKR--DGKVYRQRFEGGDPVGPLEVVGTAGKRKTGTRVRFWPDPKIFDSPKFSPERLK 191 (631)
T ss_pred cCcccccchhhhhhheeeEEEEEEe--CCeEEEEEEECCcCccCccccccccCCCCCcEEEEEECHHHcCCcccCHHHHH
Confidence 9999999999999999999999974 7889999999998866655555543 679999999999999988889999875
Q ss_pred HHHHHHHHhhccCCCcEEEecccc----CC-ccchHHHHHHHhccC-CCCCC-CeEEEEEecCCeeEEEEeecCC-CceE
Q psy7164 266 LITRRAYDAAASTKDVKVFLNGEK----LP-VKNFQDYVKLYTDRQ-DEDGD-PVKIIYENVNPRWEVAIAPSDR-GFQQ 337 (2307)
Q Consensus 266 ~l~~Rl~dlA~LnpGLkI~lnder----~~-~~G~~dYV~~~~~~~-~~~~~-~~~ii~e~~~~~~EVAl~~s~~-~y~~ 337 (2307)
+|++++|+|||||+|+|+|++ +. .+||.+||.++.... ..+.. ++.+..+..+..|||||+|+++ ..++
T Consensus 192 ---~~l~~~A~lnpgl~i~l~d~~~~~~f~~~~gl~~~v~~~~~~~~~i~~~~~i~~~~~~~~~~veval~~~~~~~~~~ 268 (631)
T PRK05559 192 ---ERLRSKAFLLPGLTITLNDERERQTFHYENGLKDYLAELNEGKETLPEEFVGSFEGEAEGEAVEWALQWTDEGGENI 268 (631)
T ss_pred ---HHHHHHHhhCCCeEEEEEeCCceEEEECCccHHHHHHHHhCCCCccCCCCceEEeeeeccceEEEEEEecCCCCeEE
Confidence 899999999999999999997 32 369999999998432 22222 3433333458899999999873 3457
Q ss_pred EEeeCCccCCCCcchhhHHHHHHHHHHHHHHHHhccccccceeeccccccccccchhhhhcccccccccccccccCChHh
Q psy7164 338 VSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQ 417 (2307)
Q Consensus 338 ~SFVNnI~T~eGGTHvdgfr~aLtr~i~~~~kkk~k~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~dvreg~~~vk~~d 417 (2307)
+||||||+|++|||||+||+++|+++|++|+++++. +|+ ...++++|
T Consensus 269 ~SFvN~I~T~~GGTHv~g~~~al~~~in~~~~~~~l----------------~k~-----------------~~~l~~~d 315 (631)
T PRK05559 269 ESYVNLIPTPQGGTHENGFREGLLKAVREFAEKRNL----------------LPK-----------------GKKLEGED 315 (631)
T ss_pred EEEECcccCCCCCCHHHHHHHHHHHHHHHHHHHhCc----------------ccc-----------------ccCCChhh
Confidence 999999999999999999999999999999998764 221 14578999
Q ss_pred HhcceEEEEEeecCCCcccchhhhhhhcccc-cc-----------------------c----------------------
Q psy7164 418 VKNHIWIFINCLIVNPTFDSQTKENMTLQKG-SF-----------------------G---------------------- 451 (2307)
Q Consensus 418 Ire~L~~~Vsvki~nP~FegQTKekL~~~~~-~~-----------------------~---------------------- 451 (2307)
||+||++||||+|+||+|+||||++|++... .+ .
T Consensus 316 iregl~~vvsvki~~P~FegQTK~kL~n~~v~~~v~~~v~~~l~~~l~~n~~~a~~ii~k~~~~a~ar~~~~~~~~r~k~ 395 (631)
T PRK05559 316 VREGLAAVLSVKIPEPQFEGQTKEKLGSREARRFVSGVVKDAFDLWLNQNPELAEKLAEKAIKAAQARLRAAKKVKRKKK 395 (631)
T ss_pred HhhceEEEEEEEcCCCcccCcccccccCHhHhhhhhhHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999975210 00 0
Q ss_pred --cccc-cccccccccCCCCCCCcEEEEEecCccchhcccCcccccccc--eeeccCCcccchhhccchHHHhhcHHHHH
Q psy7164 452 --STCV-PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPLRGKLLNVREATHKQILENAEINN 526 (2307)
Q Consensus 452 --~k~l-pKL~Dc~~a~tk~~~~ceLfIvEGDSA~~~a~sGsak~gRD~--qaIlPLRGKiLNV~ka~~~ki~~N~EI~~ 526 (2307)
...+ +||+||+ ++++++|||||||||||| |||++|||| |||||||||||||++++.+||++|+||++
T Consensus 396 ~~~~~lpgKL~dc~---~~~~~~~eL~lvEGDSAg-----gsak~grdr~~qailPLRGKiLNv~~a~~~ki~~N~Ei~~ 467 (631)
T PRK05559 396 TSGPALPGKLADCT---SQDPERTELFLVEGDSAG-----GSAKQARDREFQAILPLRGKILNTWEASLDDVLANEEIHD 467 (631)
T ss_pred ccCCCCCCcCcccc---cCCCCCCEEEEEeCCCCc-----cccccccCccceeecccCCeecccccCCHHHHhcChhHHH
Confidence 0013 5999997 578999999999999999 777889885 99999999999999999999999999999
Q ss_pred HHHHhccccCCCcCCcCCCCCCCCCcEEecccCCCCCCchhHHHHHHHHHhhhhhhcCCcEEEecCcEEEEEeCCeEEEE
Q psy7164 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSF 606 (2307)
Q Consensus 527 Li~aLGlg~~~~y~~~~d~~~LRYgkIiImTDaDvDG~HI~~LLltff~r~~p~Li~~G~vy~~~tPL~kv~~gk~~~~f 606 (2307)
||+|||||++++ ||+++||||||||||||||||+|||||||||||||||+||++||||+|+||||||++||++.||
T Consensus 468 l~~alG~~~~~~----~~~~~LRY~kIiImTDaDvDGsHI~~Llltff~~~~p~Li~~G~v~~~~~Pl~kv~~gk~~~y~ 543 (631)
T PRK05559 468 IIVAIGIGPGDS----FDLEDLRYGKIIIMTDADVDGAHIATLLLTFFYRHFPPLVEAGHVYIALPPLYRVDKGKKKIYA 543 (631)
T ss_pred HHHHhCCCCCCc----cCccccccCeEEEEeCCCCCcchhHHHHHHHHHHhCHhhccCCeEEEecCCEEEEEcCCceEEe
Confidence 999999999865 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eChHHHHHHHHHhc-CCCccCcEEeccc----------ccCc-----eeeeecCC
Q psy7164 607 YSLPEFEEWKEETT-NWHTYKIKYYKVV----------YVTG-----VLLFKMNL 645 (2307)
Q Consensus 607 ys~~e~~~~~~~~~-~~~~~~ikryKGL----------yf~~-----l~~f~~~~ 645 (2307)
|++.||++|++++. ..++|+||||||| ||.+ |+.|...|
T Consensus 544 ~~~~e~~~~~~~~~~~~~~~~i~ryKGLGe~~~~~~~e~~~~p~~r~l~~v~~~d 598 (631)
T PRK05559 544 LDEEEKEELLKKLGKKGGKPEIQRFKGLGEMNPDQLWETTMDPETRRLVRVTIDD 598 (631)
T ss_pred cCHHHHHHHHHHhcccCCCCCceEeCchhhcCHHHHHHHhhCccceeEEEEEccc
Confidence 99999999998863 2368999999999 7753 66666543
No 11
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=100.00 E-value=6e-126 Score=1226.53 Aligned_cols=502 Identities=29% Similarity=0.423 Sum_probs=442.9
Q ss_pred CCChhhhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeE
Q psy7164 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCI 108 (2307)
Q Consensus 29 ~~~~~~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I 108 (2307)
.++. ..||+|+++||||+||+|||||+++ +||||+|+|||+||+||++ +|+|+.|
T Consensus 7 ~Y~~-~~i~~L~~lE~Vr~RPgMYiGs~~~-----------------------~gl~~~v~ElvdNaiDe~~-ag~a~~I 61 (638)
T PRK05644 7 EYDA-SQIQVLEGLEAVRKRPGMYIGSTGE-----------------------RGLHHLVYEIVDNSIDEAL-AGYCDHI 61 (638)
T ss_pred CCCH-HHCeEecchHHHhcCCCceECCCCh-----------------------hhHHhhhHHhhhccccccc-CCCCCEE
Confidence 4666 4799999999999999999999984 7999999999999999987 7999999
Q ss_pred EEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCcccccc
Q psy7164 109 KITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTG 188 (2307)
Q Consensus 109 ~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sg 188 (2307)
+|+|+. +|+|+|+|||||||++.|+.+++|++|+||++|||| ||||++.|++|+
T Consensus 62 ~V~i~~-~g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag-------------------------~kfd~~~yk~s~ 115 (638)
T PRK05644 62 EVTINE-DGSITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAG-------------------------GKFGGGGYKVSG 115 (638)
T ss_pred EEEEeC-CCcEEEEEeCccccCCccCCCCCCchHHheeeeccc-------------------------CccCCCcccccC
Confidence 999998 589999999999999999999999999999999999 999999999999
Q ss_pred CCCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCCCCCCCcEEEEEeCcccccccccCHHHHHHHH
Q psy7164 189 GRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268 (2307)
Q Consensus 189 GlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~~~~~GT~VtF~PD~~iF~~~~f~~d~l~~l~ 268 (2307)
|+||+|+++|||||++|+|++++ +|+.|+|.|++|++..+...++ .+..+||+|+|+||+++|++..|+++++.
T Consensus 116 G~~G~Gls~vnalS~~~~v~t~r--~g~~~~~~~~~G~~~~~~~~~~-~~~~~GT~I~F~Pd~~~F~~~~~e~~~i~--- 189 (638)
T PRK05644 116 GLHGVGVSVVNALSTWLEVEVKR--DGKIYYQEYERGVPVTPLEVIG-ETDETGTTVTFKPDPEIFETTEFDYDTLA--- 189 (638)
T ss_pred CccccchhhhhheeceEEEEEEe--CCcEEEEEEECCeEccCccccC-CcCCCCcEEEEEECHHHcCCcccCHHHHH---
Confidence 99999999999999999999974 6889999999998765444443 24579999999999999988899999864
Q ss_pred HHHHHhhccCCCcEEEeccccCCc---------cchHHHHHHHhcc-CCCCCCCeEEEEEecCCeeEEEEeecCCCce--
Q psy7164 269 RRAYDAAASTKDVKVFLNGEKLPV---------KNFQDYVKLYTDR-QDEDGDPVKIIYENVNPRWEVAIAPSDRGFQ-- 336 (2307)
Q Consensus 269 ~Rl~dlA~LnpGLkI~lnder~~~---------~G~~dYV~~~~~~-~~~~~~~~~ii~e~~~~~~EVAl~~s~~~y~-- 336 (2307)
+|++++|+|||||+|.|+|++.+. +||++||+++... ...+.+++.+..+.++.+|||||+|++ +|+
T Consensus 190 ~rl~~~A~l~pgl~i~l~~er~~~~~~~~f~~~~Gl~dyv~~l~~~~~~~~~~~i~~~~~~~~~~veval~~~~-~~~~~ 268 (638)
T PRK05644 190 TRLRELAFLNKGLKITLTDEREGEEKEETFHYEGGIKEYVEYLNRNKEPLHEEPIYFEGEKDGIEVEVAMQYND-GYSEN 268 (638)
T ss_pred HHHHHHHhhCCCcEEEEEeccCCCcceeEEEcCCCHHHHHHHHhcCCCcCCCCCeEEEeeccCeEEEEEEEecC-CCceE
Confidence 999999999999999999998432 6999999998732 222233443333334578999999997 575
Q ss_pred EEEeeCCccCCCCcchhhHHHHHHHHHHHHHHHHhccccccceeeccccccccccchhhhhcccccccccccccccCChH
Q psy7164 337 QVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPF 416 (2307)
Q Consensus 337 ~~SFVNnI~T~eGGTHvdgfr~aLtr~i~~~~kkk~k~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~dvreg~~~vk~~ 416 (2307)
++||||+|+|++||||++||+++|+++|++|+++++. +|+ +...++++
T Consensus 269 ~~SFvN~I~T~~GGTHv~g~~~al~~~l~~~~~k~~~----------------~Kk----------------~~~~i~~~ 316 (638)
T PRK05644 269 ILSFANNINTHEGGTHEEGFKTALTRVINDYARKNKL----------------LKE----------------KDDNLTGE 316 (638)
T ss_pred EEEEECcccCCCCCCHHHHHHHHHHHHHHHHHHHhCc----------------ccc----------------cCCCCChh
Confidence 5999999999999999999999999999999988764 222 12468899
Q ss_pred hHhcceEEEEEeecCCCcccchhhhhhhcc-ccccc--------------------------------------------
Q psy7164 417 QVKNHIWIFINCLIVNPTFDSQTKENMTLQ-KGSFG-------------------------------------------- 451 (2307)
Q Consensus 417 dIre~L~~~Vsvki~nP~FegQTKekL~~~-~~~~~-------------------------------------------- 451 (2307)
|||+||++||||+|+||+|+||||++|++. .+.++
T Consensus 317 dIregl~~vVsv~i~nP~F~gQTKekL~~~~v~~~v~~~v~~~l~~~l~~n~~~~~~I~~~~~~~a~~r~~a~~~k~~~r 396 (638)
T PRK05644 317 DVREGLTAVISVKHPEPQFEGQTKTKLGNSEVRGIVDSVVSEALSEFLEENPNVAKKIVEKAILAARAREAARKARELTR 396 (638)
T ss_pred HHhhceEEEEEEecCCCcccCcccccccCHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Confidence 999999999999999999999999999742 10000
Q ss_pred cc------ccc-ccccccccCCCCCCCcEEEEEecCccchhcccCcccccccc--eeeccCCcccchhhccchHHHhhcH
Q psy7164 452 ST------CVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPLRGKLLNVREATHKQILENA 522 (2307)
Q Consensus 452 ~k------~lp-KL~Dc~~a~tk~~~~ceLfIvEGDSA~~~a~sGsak~gRD~--qaIlPLRGKiLNV~ka~~~ki~~N~ 522 (2307)
.+ .+| ||+|| +++++++|||||||||||| |+|++|||| |||||||||||||++++.+||++|+
T Consensus 397 ~k~~~~~~~lpgKL~dc---~~~~~~~~eLflvEGDSA~-----gsak~grdr~~qailPLrGKiLNv~~a~~~ki~~N~ 468 (638)
T PRK05644 397 RKSALESSSLPGKLADC---SSKDPEESELYIVEGDSAG-----GSAKQGRDRRFQAILPLRGKILNVEKARLDKILKNE 468 (638)
T ss_pred cccccccCCCCchhccc---ccCCCCccEEEEEecCCCc-----cccccccCccceeecccCCceeccccCCHHHHHhCH
Confidence 00 144 99999 5789999999999999999 677788885 9999999999999999999999999
Q ss_pred HHHHHHHHhccccCCCcCCcCCCCCCCCCcEEecccCCCCCCchhHHHHHHHHHhhhhhhcCCcEEEecCcEEEEEeCCe
Q psy7164 523 EINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKARE 602 (2307)
Q Consensus 523 EI~~Li~aLGlg~~~~y~~~~d~~~LRYgkIiImTDaDvDG~HI~~LLltff~r~~p~Li~~G~vy~~~tPL~kv~~gk~ 602 (2307)
||++|++||||+++++ +|+++|||||||||||||+||+|||+|||||||||||+||+.||||+|+||||||++|++
T Consensus 469 Ei~~l~~alG~~~~~~----~~~~~LRY~kiiImtDaD~DG~HI~~Llltff~~~~p~Li~~G~l~~~~~Pl~kv~~gk~ 544 (638)
T PRK05644 469 EIRALITALGTGIGDD----FDISKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYMRPLIEAGYVYIAQPPLYKIKKGGK 544 (638)
T ss_pred HHHHHHHHhCCCCCCc----CChhhCccCeEEEEeCCCCCchHHHHHHHHHHHHhCHHhccCCeEEEecCCEEEEEeCCe
Confidence 9999999999999876 589999999999999999999999999999999999999999999999999999999998
Q ss_pred EEEEeChHHHHHHHHHhcC--CCccCcEEeccc
Q psy7164 603 ELSFYSLPEFEEWKEETTN--WHTYKIKYYKVV 633 (2307)
Q Consensus 603 ~~~fys~~e~~~~~~~~~~--~~~~~ikryKGL 633 (2307)
+ ||||++||++|++++.+ .++|+|||||||
T Consensus 545 ~-~~~~~~e~~~~~~~~~~~~~~~~~i~ryKGL 576 (638)
T PRK05644 545 E-YAYSDEELDEILAELKLKGNPKYGIQRYKGL 576 (638)
T ss_pred E-eecCHHHHHHHHHHhccccCCCCceeEecCc
Confidence 8 99999999999987754 367999999999
No 12
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=100.00 E-value=6.6e-124 Score=1203.58 Aligned_cols=499 Identities=23% Similarity=0.358 Sum_probs=434.1
Q ss_pred CChhhhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeEE
Q psy7164 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIK 109 (2307)
Q Consensus 30 ~~~~~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I~ 109 (2307)
++. ..+++|+|+|||||||||||||+++ +|+++|||+||+||++ +|+|+.|.
T Consensus 4 y~~-~~i~~L~gle~VRkRPgMYigs~~~--------------------------~~lv~ElvdNsiDE~~-ag~a~~I~ 55 (625)
T TIGR01055 4 YSA-KDIEVLDGLEPVRKRPGMYTDTTRP--------------------------NHLVQEVIDNSVDEAL-AGFASIIM 55 (625)
T ss_pred cCh-hhceeecccHHhhcCCCCeeCCCCc--------------------------ceeehhhhhcccchhh-cCCCCEEE
Confidence 555 5789999999999999999999863 6899999999999998 78999999
Q ss_pred EEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCccccccC
Q psy7164 110 ITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGG 189 (2307)
Q Consensus 110 V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgG 189 (2307)
|+|+.+ ++|+|+|||||||+++|+++|+|++|++||++||| |||++..|++|||
T Consensus 56 V~i~~d-~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhag-------------------------sK~~~~~~~~SgG 109 (625)
T TIGR01055 56 VILHQD-QSIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAG-------------------------GKFSNKNYHFSGG 109 (625)
T ss_pred EEEeCC-CeEEEEecCCccCcccccccCCcHHHHhhhccccc-------------------------CCCCCCcceecCC
Confidence 999985 99999999999999999999999999999999999 9999889999999
Q ss_pred CCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCC-CCCCCcEEEEEeCcccccccccCHHHHHHHH
Q psy7164 190 RNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSG-SKDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268 (2307)
Q Consensus 190 lhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~-~~~~GT~VtF~PD~~iF~~~~f~~d~l~~l~ 268 (2307)
+||+|+++|||||+||+|++++ +|+.|+|.|++|++..+.+.++.+ ...+||+|+|+||+++|++..|+++.+.
T Consensus 110 ~~GvGls~vnalS~~l~v~~~r--~g~~~~~~~~~G~~~~~~~~i~~~~~~~~GT~V~F~PD~~~F~~~~~e~~~i~--- 184 (625)
T TIGR01055 110 LHGVGISVVNALSKRVKIKVYR--QGKLYSIAFENGAKVTDLISAGTCGKRLTGTSVHFTPDPEIFDSLHFSVSRLY--- 184 (625)
T ss_pred CcchhHHHHHHhcCeEEEEEEE--CCeEEEEEEECCeEccccccccccCCCCCCeEEEEEECHHHCCCCccCHHHHH---
Confidence 9999999999999999999974 788899999999986666666554 3459999999999999998899998875
Q ss_pred HHHHHhhccCCCcEEEeccccCC-------ccchHHHHHHHhccC-CCCCCCeEEEEEecCCeeEEEEeecCCCce--EE
Q psy7164 269 RRAYDAAASTKDVKVFLNGEKLP-------VKNFQDYVKLYTDRQ-DEDGDPVKIIYENVNPRWEVAIAPSDRGFQ--QV 338 (2307)
Q Consensus 269 ~Rl~dlA~LnpGLkI~lnder~~-------~~G~~dYV~~~~~~~-~~~~~~~~ii~e~~~~~~EVAl~~s~~~y~--~~ 338 (2307)
.|++++|+|||||+|+|+|+|.. .+||++||++++... ..+.+++...+..+++.+||||+|++++|+ ++
T Consensus 185 ~~l~~lA~lnpgi~~~l~der~~~~~~f~~~~Gi~~yv~~l~~~~~~~~~~~~~~~~~~~~~~ve~al~~~~~~~~~~~~ 264 (625)
T TIGR01055 185 HILRAKAVLCRGVEIEFEDEVNNTKALWNYPDGLKDYLSEAVNGDNTLPPKPFSGNFEGDDEAVEWALLWLPEGGELFME 264 (625)
T ss_pred HHHHHHHhhCCCcEEEEeecCCCceeEEecCchHHHHHHHHhcCCCCCCCCceEEEEeeCCceEEEEEEEecCCCCEEEE
Confidence 89999999999999999999853 269999999987322 222222222222356789999999864453 68
Q ss_pred EeeCCccCCCCcchhhHHHHHHHHHHHHHHHHhccccccceeeccccccccccchhhhhcccccccccccccccCChHhH
Q psy7164 339 SFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQV 418 (2307)
Q Consensus 339 SFVNnI~T~eGGTHvdgfr~aLtr~i~~~~kkk~k~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~dvreg~~~vk~~dI 418 (2307)
||||||+|++||||++||++||+++|++|++++++ .|+ ...++++||
T Consensus 265 SFvN~I~T~~GGTHv~gf~~alt~~in~~~~~~~~----------------~kk-----------------~~~i~~~di 311 (625)
T TIGR01055 265 SYVNLIPTPQGGTHVNGLRQGLLDALREFCEMRNN----------------LPR-----------------GVKLTAEDI 311 (625)
T ss_pred EeeccccCCCCCCHHHHHHHHHHHHHHHHHHHhCc----------------ccc-----------------cCCCCHHHH
Confidence 99999999999999999999999999999988764 111 145889999
Q ss_pred hcceEEEEEeecCCCcccchhhhhhhccc-ccc-----------------------------------------------
Q psy7164 419 KNHIWIFINCLIVNPTFDSQTKENMTLQK-GSF----------------------------------------------- 450 (2307)
Q Consensus 419 re~L~~~Vsvki~nP~FegQTKekL~~~~-~~~----------------------------------------------- 450 (2307)
|+||++||||+++||+|+||||++|++.. +.+
T Consensus 312 regl~~vVsvki~~P~FegQTK~kL~n~~v~~~v~~~v~~~l~~~l~~n~~~a~~i~~k~~~~a~ar~~~a~~~~rk~~~ 391 (625)
T TIGR01055 312 WDRCSYVLSIKMQDPQFAGQTKERLSSRQVAKFVSGVIKDAFDLWLNQNVQLAEHLAEHAISSAQRRKRAAKKVVRKKLT 391 (625)
T ss_pred hhccEEEEEEeccCCcccCcccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999998521 000
Q ss_pred cccccc-ccccccccCCCCCCCcEEEEEecCccchhcccCcccccccc--eeeccCCcccchhhccchHHHhhcHHHHHH
Q psy7164 451 GSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPLRGKLLNVREATHKQILENAEINNL 527 (2307)
Q Consensus 451 ~~k~lp-KL~Dc~~a~tk~~~~ceLfIvEGDSA~~~a~sGsak~gRD~--qaIlPLRGKiLNV~ka~~~ki~~N~EI~~L 527 (2307)
....+| ||+|| +++++++|||||||||||| |||++|||| |||||||||||||++++.+||++|+||++|
T Consensus 392 ~~~~lpgKL~dc---~~~~~~~~eLfivEGDSA~-----gsak~grdr~~qailPLRGKiLNv~ka~~~ki~~N~Ei~~l 463 (625)
T TIGR01055 392 SGPALPGKLADC---TRQDLEGTELFLVEGDSAG-----GSAKQARDREYQAILPLWGKILNTWEVSLDKVLNSQEIHDI 463 (625)
T ss_pred cCCCCCcccccc---ccCCCCceEEEEEecCCCC-----ccccccCCcceeEEeccCCceeecccCCHHHhhcCHHHHHH
Confidence 000144 99999 5789999999999999999 666778875 999999999999999999999999999999
Q ss_pred HHHhccccCCCcCCcCCCCCCCCCcEEecccCCCCCCchhHHHHHHHHHhhhhhhcCCcEEEecCcEEEEEeCCeEEEEe
Q psy7164 528 VKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFY 607 (2307)
Q Consensus 528 i~aLGlg~~~~y~~~~d~~~LRYgkIiImTDaDvDG~HI~~LLltff~r~~p~Li~~G~vy~~~tPL~kv~~gk~~~~fy 607 (2307)
|+|||||++++ |+++||||||||||||||||+|||||||||||||||+||+.||||+|+||||||++||+..|+|
T Consensus 464 i~alG~g~~~~-----~~~~LRY~kiiImTDADvDG~HI~~LLltff~r~~p~Li~~G~vy~~~~Pl~kv~~gk~~~y~~ 538 (625)
T TIGR01055 464 EVALGIDPDSN-----DLSQLRYGKICILADADSDGLHIATLLCALFFLHFPKLVEEGHVYVAKPPLYRIDLSKEVYYAL 538 (625)
T ss_pred HHHhCCCcccc-----cccccccceEEEEeCCCCCcchhHHHHHHHHHHhCHhhccCCeEEEEeCCEEEEecCCceEEcC
Confidence 99999999864 5899999999999999999999999999999999999999999999999999999999877888
Q ss_pred ChHHHHHHHHHhcC-CCccCcEEeccc
Q psy7164 608 SLPEFEEWKEETTN-WHTYKIKYYKVV 633 (2307)
Q Consensus 608 s~~e~~~~~~~~~~-~~~~~ikryKGL 633 (2307)
++.|++++.+++.+ .++|+|||||||
T Consensus 539 ~e~e~~~~~~~~~~~~~~~~i~ryKGL 565 (625)
T TIGR01055 539 DEEEKEKLLYKLKKKKGKPNVQRFKGL 565 (625)
T ss_pred CHHHHHHHHHhhcccCCCcceeEeccc
Confidence 88777777665543 257999999999
No 13
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=100.00 E-value=3.6e-122 Score=1200.17 Aligned_cols=499 Identities=29% Similarity=0.443 Sum_probs=442.5
Q ss_pred hhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeEEEEEE
Q psy7164 34 KIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVN 113 (2307)
Q Consensus 34 ~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~ 113 (2307)
+.|++|+++||||+||+|||||+++ +||+|+|+|||+||+||+. +|+|+.|.|+|+
T Consensus 4 ~~i~~L~~lE~vr~RP~mYiGs~~~-----------------------~gl~~vv~Elv~NaiDe~~-ag~a~~I~V~i~ 59 (654)
T TIGR01059 4 SSIKVLEGLEAVRKRPGMYIGSTGE-----------------------TGLHHLVYEVVDNSIDEAM-AGYCDTINVTIN 59 (654)
T ss_pred HHCeEecchHHHhcCCCceeCCCCc-----------------------chHHhhhHHhhhccccccc-cCCCCEEEEEEe
Confidence 5789999999999999999999984 8999999999999999996 799999999999
Q ss_pred ccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCccccccCCCcc
Q psy7164 114 QETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGY 193 (2307)
Q Consensus 114 ~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGV 193 (2307)
. +|+|+|+|||+|||++.|+..+++.+|+||++||+| ||||++.|++|+|+||+
T Consensus 60 ~-~g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ag-------------------------~kf~~~~~k~s~G~~G~ 113 (654)
T TIGR01059 60 D-DGSVTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAG-------------------------GKFDKDSYKVSGGLHGV 113 (654)
T ss_pred C-CCcEEEEEeCCCcCccccCcCCCCchHHheeeeccc-------------------------CccCCCcceecCCccch
Confidence 7 689999999999999999999999999999999999 99999999999999999
Q ss_pred cccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCCCCCCCcEEEEEeCcccccccccCHHHHHHHHHHHHH
Q psy7164 194 GAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYD 273 (2307)
Q Consensus 194 GasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~~~~~GT~VtF~PD~~iF~~~~f~~d~l~~l~~Rl~d 273 (2307)
|+++|||||+||+|++++ +|+.|+|.|++|++..+ +.+.+....+||+|+|+||+++|.+..++++.+. +|+++
T Consensus 114 gl~~inalS~~l~v~~~~--~g~~~~~~~~~G~~~~~-l~~~~~~~~~GT~V~F~pdp~~F~~~~~e~~~i~---~rl~~ 187 (654)
T TIGR01059 114 GVSVVNALSEWLEVTVFR--DGKIYRQEFERGIPLGP-LEVVGETKKTGTTVRFWPDPEIFETTEFDFDILA---KRLRE 187 (654)
T ss_pred hHHHHHHhcCeEEEEEEE--CCeEEEEEEeCCCcccC-ceeccCCCCCCcEEEEEEChHHhCCcccCHHHHH---HHHHH
Confidence 999999999999999974 78899999999988553 3344456789999999999999998889999874 99999
Q ss_pred hhccCCCcEEEeccccCC---------ccchHHHHHHHhc-cCCCCCCCeEEEEEecCCeeEEEEeecCCCceE--EEee
Q psy7164 274 AAASTKDVKVFLNGEKLP---------VKNFQDYVKLYTD-RQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQ--VSFV 341 (2307)
Q Consensus 274 lA~LnpGLkI~lnder~~---------~~G~~dYV~~~~~-~~~~~~~~~~ii~e~~~~~~EVAl~~s~~~y~~--~SFV 341 (2307)
+|+|||||+|.|+|++.. .+||++|+++++. +...+.+++.+..+.++.+|||||+|++ +|++ +|||
T Consensus 188 ~A~l~pgl~i~l~~er~~~~~~~~f~~~~Gl~~yv~~l~~~~~~l~~~~i~~~~~~~~~~veva~~~~~-~~~~~~~SFv 266 (654)
T TIGR01059 188 LAFLNSGVKISLEDERDGKGKSVTFHYEGGIKSFVKYLNRNKEPLHEEIIYIKGEKEGIEVEVALQWND-GYSENILSFV 266 (654)
T ss_pred hhccCCCeEEEEEeecCCCCceeEEEcCCcHHHHHHHHhcCCCcCCCCCeEEEecccCeEEEEEEEecC-CCceeEEEEE
Confidence 999999999999999853 2699999999873 2222234444333334679999999997 5754 9999
Q ss_pred CCccCCCCcchhhHHHHHHHHHHHHHHHHhccccccceeeccccccccccchhhhhcccccccccccccccCChHhHhcc
Q psy7164 342 NSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNH 421 (2307)
Q Consensus 342 NnI~T~eGGTHvdgfr~aLtr~i~~~~kkk~k~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~dvreg~~~vk~~dIre~ 421 (2307)
|+|+|++||||++||+++|+++|++|+++++. +|+ ....++++|||+|
T Consensus 267 N~I~T~~GGTHv~g~~~al~~~i~~~~~~~~l----------------~K~----------------~~~~i~~~direg 314 (654)
T TIGR01059 267 NNINTREGGTHLEGFRSALTRVINSYAKNNKL----------------LKE----------------SKPNLTGEDIREG 314 (654)
T ss_pred CcccCCCCCcHHHHHHHHHHHHHHHHHHHhCc----------------ccc----------------cCCCCCHHHHhhc
Confidence 99999999999999999999999999988764 122 1246889999999
Q ss_pred eEEEEEeecCCCcccchhhhhhhccc-ccc-----------------------c--------------------------
Q psy7164 422 IWIFINCLIVNPTFDSQTKENMTLQK-GSF-----------------------G-------------------------- 451 (2307)
Q Consensus 422 L~~~Vsvki~nP~FegQTKekL~~~~-~~~-----------------------~-------------------------- 451 (2307)
|++||||+|+||+|+||||++|++.. ..+ .
T Consensus 315 l~~vvsv~i~~P~F~gQTK~kL~~~~v~~~v~~~v~~~l~~~l~~n~~~a~~iv~k~~~~a~~r~~a~~~k~~~r~k~~~ 394 (654)
T TIGR01059 315 LTAVISVKVPDPQFEGQTKTKLGNSEVRSIVESLVYEKLTEFFEENPQEAKAIVEKAILAAQAREAARKARELTRRKSAL 394 (654)
T ss_pred cEEEEEEecCCCcccCcccccccChhHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhHHHhhccccc
Confidence 99999999999999999999997420 000 0
Q ss_pred -ccccc-ccccccccCCCCCCCcEEEEEecCccchhcccCcccccccc--eeeccCCcccchhhccchHHHhhcHHHHHH
Q psy7164 452 -STCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPLRGKLLNVREATHKQILENAEINNL 527 (2307)
Q Consensus 452 -~k~lp-KL~Dc~~a~tk~~~~ceLfIvEGDSA~~~a~sGsak~gRD~--qaIlPLRGKiLNV~ka~~~ki~~N~EI~~L 527 (2307)
...+| ||+|| +++++++|||||||||||| |+|++|||+ |||||||||||||++++.+||++|+||++|
T Consensus 395 ~~~~lpgKL~dc---~~~~~~~~eL~lvEGDSA~-----gsak~gRd~~~qai~PLrGKiLNv~~~~~~ki~~n~Ei~~l 466 (654)
T TIGR01059 395 DSGGLPGKLADC---SSKDPSKSELYIVEGDSAG-----GSAKQGRDRKFQAILPLRGKILNVEKARLDKILSNQEIGAI 466 (654)
T ss_pred ccCCCCcCccCc---ccCCCCCCEEEEEecCCCC-----cccccccccccccccccCCccchhccCCHHHHhhChHHHHH
Confidence 00144 99999 5789999999999999999 788999996 899999999999999999999999999999
Q ss_pred HHHhccccCCCcCCcCCCCCCCCCcEEecccCCCCCCchhHHHHHHHHHhhhhhhcCCcEEEecCcEEEEEeCCeE----
Q psy7164 528 VKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREE---- 603 (2307)
Q Consensus 528 i~aLGlg~~~~y~~~~d~~~LRYgkIiImTDaDvDG~HI~~LLltff~r~~p~Li~~G~vy~~~tPL~kv~~gk~~---- 603 (2307)
++||||+++++ ||+++|||||||||||||+||+||++|||||||||||+||+.||||+|+||||||++||++
T Consensus 467 ~~~lG~~~~~~----~~~~~LrY~kiiImtDaD~DG~HI~~Lll~ff~~~~p~Li~~g~~~~~~~Pl~kv~~g~~~~~~~ 542 (654)
T TIGR01059 467 ITALGCGIGKD----FDLEKLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIENGYVYIAQPPLYKVKKGKKERYIK 542 (654)
T ss_pred HHHhCCCcccc----ccccccccceEEEEeCCCCCcchhHHHHHHHHHHhcHhhccCCeEEEecCCEEEEEeCCeeeecc
Confidence 99999999875 5899999999999999999999999999999999999999999999999999999999877
Q ss_pred -----------------EEEeChHHHHHHHHHhc---CCCccCcEEeccc
Q psy7164 604 -----------------LSFYSLPEFEEWKEETT---NWHTYKIKYYKVV 633 (2307)
Q Consensus 604 -----------------~~fys~~e~~~~~~~~~---~~~~~~ikryKGL 633 (2307)
.||||++|+++|+++++ ..++|+|||||||
T Consensus 543 ~~~~~~~~~~~~~~~~e~Y~~dd~e~e~~l~~l~~~~~~~~~~IqryKGL 592 (654)
T TIGR01059 543 DDKEKELVGEALEDLRALYIYSDKEKEEAKTQIPVHEGRKGIEIQRYKGL 592 (654)
T ss_pred cchhhhccccccccccceecCCHHHHHHHHHhccccccCCCcceeeeCch
Confidence 89999999999998653 1357999999999
No 14
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=100.00 E-value=2.7e-116 Score=1133.36 Aligned_cols=473 Identities=41% Similarity=0.614 Sum_probs=415.8
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVT 162 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~ 162 (2307)
||||+|+|||+||+||++ +|+|+.|.|+|+.+ |+|+|+|||||||++.|+..++|++|+||+++|||
T Consensus 1 GL~~~v~ElvdNAiD~~~-~g~at~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag----------- 67 (594)
T smart00433 1 GLHHLVDEIVDNAADEAL-AGYMDTIKVTIDKD-NSISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAG----------- 67 (594)
T ss_pred CceEEEeeehhcccchhc-cCCCCEEEEEEeCC-CeEEEEEeCCceeCCccCcCCCCcHHHhhhhhccc-----------
Confidence 799999999999999997 57899999999984 79999999999999999999999999999999999
Q ss_pred cccccccccccccccCCCCCccccccCCCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCCCCCCC
Q psy7164 163 GVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDF 242 (2307)
Q Consensus 163 ~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~~~~~G 242 (2307)
||||++.|++|+|+||+|+++|||||++|+|+|++ +|+.|.|.|.+|+....++.+.+.+.++|
T Consensus 68 --------------~kfd~~~~k~s~G~~G~Gls~vnalS~~l~v~~~~--~g~~~~~~~~~~G~~~~~~~~~~~~~~~G 131 (594)
T smart00433 68 --------------GKFDDDAYKVSGGLHGVGASVVNALSTEFEVEVAR--DGKEYKQSFSNNGKPLSEPKIIGDTKKDG 131 (594)
T ss_pred --------------CCCCCCCccccCCcccchHHHHHHhcCceEEEEEe--CCcEEEEEEeCCCeECccceecCCCCCCC
Confidence 99999999999999999999999999999999975 58889999988544455454445556899
Q ss_pred cEEEEEeCccccccc-ccCHHHHHHHHHHHHHhhccCCCcEEEecccc-------CCccchHHHHHHHhcc-CCCCCCCe
Q psy7164 243 TKITFTPDLTKFKMT-SLDKDMVDLITRRAYDAAASTKDVKVFLNGEK-------LPVKNFQDYVKLYTDR-QDEDGDPV 313 (2307)
Q Consensus 243 T~VtF~PD~~iF~~~-~f~~d~l~~l~~Rl~dlA~LnpGLkI~lnder-------~~~~G~~dYV~~~~~~-~~~~~~~~ 313 (2307)
|+|+|+||+++|... .++++.+ .+|++++|+|||||+|.|+|++ ...+||++||++++.. ...+..++
T Consensus 132 T~V~F~Pd~~~F~~~~~~~~~~i---~~rl~~~A~l~pgl~i~l~der~~~~~~f~~~~Gl~~yv~~~~~~~~~~~~~~i 208 (594)
T smart00433 132 TKVTFKPDLEIFGMTTDDDFELL---KRRLRELAFLNKGVKITLNDERSDEEETFLFEGGIKDYVELLNKNKELLSPEPT 208 (594)
T ss_pred cEEEEEECHHHhCCcccchHHHH---HHHHHHHHhcCCCcEEEEeccCCCcceEEECCCCHHHHHHHHhCCCCcccCCCe
Confidence 999999999999765 6777766 4999999999999999999998 3458999999999843 23344566
Q ss_pred EEEEEecCCeeEEEEeecCC-CceEEEeeCCccCCCCcchhhHHHHHHHHHHHHHHHHhccccccceeeccccccccccc
Q psy7164 314 KIIYENVNPRWEVAIAPSDR-GFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKN 392 (2307)
Q Consensus 314 ~ii~e~~~~~~EVAl~~s~~-~y~~~SFVNnI~T~eGGTHvdgfr~aLtr~i~~~~kkk~k~~~~~~~~~~~~~~~~~k~ 392 (2307)
.+.++..+..|||||+|+++ .++++||||+|+|.+|||||+||+++|+++|++|++++++ +|+
T Consensus 209 ~~~~~~~~~~veval~~~~~~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~i~~~~~~~~~----------------~k~ 272 (594)
T smart00433 209 YIEGEKDNIRVEVAFQYTDGYSENIVSFVNNIATTEGGTHENGFKDALTRVINEYAKKKKK----------------LKE 272 (594)
T ss_pred EEEEEeCCcEEEEEEEccCCCCcEEEEEECCccCCCCCcHHHHHHHHHHHHHHHHHHHhCc----------------ccc
Confidence 66666678899999999973 2568999999999999999999999999999999988765 111
Q ss_pred hhhhhcccccccccccccccCChHhHhcceEEEEEeecCCCcccchhhhhhhccccc-----------------------
Q psy7164 393 NKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS----------------------- 449 (2307)
Q Consensus 393 ~k~~~~~~~~~~dvreg~~~vk~~dIre~L~~~Vsvki~nP~FegQTKekL~~~~~~----------------------- 449 (2307)
..++++|||+||++||||+++||+|+||||++|++....
T Consensus 273 ------------------~~i~~~diregl~~vIsvki~~P~FegQTK~kL~n~~~~~~v~~~v~~~l~~~l~~n~~~a~ 334 (594)
T smart00433 273 ------------------KNIKGEDVREGLTAFISVKIPEPQFEGQTKEKLGTSEVRFGVEKIVSECLLSFLEENPVEAS 334 (594)
T ss_pred ------------------CCCChhhHhhCeEEEEEEEEchheecccccccccChhHHHHHHHHHHHHHHHHHHHCHHHHH
Confidence 347889999999999999999999999999999752100
Q ss_pred ---------------------------cccc-cccccccccccCCCCCCCcEEEEEecCccchhcccCcccccccc--ee
Q psy7164 450 ---------------------------FGST-CVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YG 499 (2307)
Q Consensus 450 ---------------------------~~~k-~lpKL~Dc~~a~tk~~~~ceLfIvEGDSA~~~a~sGsak~gRD~--qa 499 (2307)
.... .++||+||+ ++++++|||||||||||| |||++|||| ||
T Consensus 335 ~ii~k~~~~a~ar~~a~~~~~~~r~k~~~~~~l~~KL~dc~---~~~~~~~eL~ivEGDSA~-----gsak~grdr~~qa 406 (594)
T smart00433 335 KIVEKVLLAAKARAAAKKARELTRKKKLSKISLPGKLADAS---SAGPKKCELFLVEGDSAG-----GSAKSGRDRDFQA 406 (594)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhcccccccccccccccccc---cCCCCCcEEEEEecCCCc-----cccccccCcccee
Confidence 0000 156999997 457889999999999999 677888886 99
Q ss_pred eccCCcccchhhccchHHHhhcHHHHHHHHHhccccCCCcCCcCCCCCCCCCcEEecccCCCCCCchhHHHHHHHHHhhh
Q psy7164 500 VFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWP 579 (2307)
Q Consensus 500 IlPLRGKiLNV~ka~~~ki~~N~EI~~Li~aLGlg~~~~y~~~~d~~~LRYgkIiImTDaDvDG~HI~~LLltff~r~~p 579 (2307)
|||||||||||++++.+||++|+||++||+|||||++++ ||+++||||||||||||||||+|||||||||||||||
T Consensus 407 ilPLrGKiLNv~~~~~~ki~~N~Ei~~li~alG~~~~~~----~~~~~LRY~kIiImtDaDvDG~HI~~Llltff~r~~p 482 (594)
T smart00433 407 ILPLRGKLLNVEKASLDKILKNEEIQALITALGLGIGKD----FDIEKLRYGKIIIMTDADVDGSHIKGLLLTFFYRYMP 482 (594)
T ss_pred ecccCCeecchhhccHHHHhhCHHHHHHHHHhCCCcCcc----cCccccccceEEEEeCCCCCcchhHHHHHHHHHHhCh
Confidence 999999999999999999999999999999999999875 5899999999999999999999999999999999999
Q ss_pred hhhcCCcEEEecCcEEEEEeCCe--EEEEeChHHHHHHHHHhc-CCCccCcEEeccc
Q psy7164 580 TLLRLPFLEEFITPIIKATKARE--ELSFYSLPEFEEWKEETT-NWHTYKIKYYKVV 633 (2307)
Q Consensus 580 ~Li~~G~vy~~~tPL~kv~~gk~--~~~fys~~e~~~~~~~~~-~~~~~~ikryKGL 633 (2307)
+||++||||+|+||||||++|++ ..+||+++|+.+|+.... +.++|+|||||||
T Consensus 483 ~Li~~G~vy~~~~Pl~ki~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ryKGL 539 (594)
T smart00433 483 PLIEAGFVYIAIPPLYKVTKGKKKYVYSFYSLDEYEKWLETKGGNKSKYEIQRYKGL 539 (594)
T ss_pred hhhhCCeEEEecCCEEEEEeCCcceEEeehhhHHHHHHHHhhhccCCCccceecccc
Confidence 99999999999999999999886 578999999999987543 2467999999999
No 15
>KOG2093|consensus
Probab=100.00 E-value=3.2e-92 Score=874.15 Aligned_cols=648 Identities=39% Similarity=0.563 Sum_probs=483.9
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHhhh--cCCCCCCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEE
Q psy7164 1310 TTAPKKKKKGGYMEAKKRKLEEQFELEA--NSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYH 1387 (2307)
Q Consensus 1310 ~~~~~~~~~g~y~~~K~~kL~~q~~~~~--~~~~~~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~ 1387 (2307)
+...+++.||+||.+++.++++|+...+ .....+++|+|+.||+||+++ |+.++|+..++-|||.++
T Consensus 10 dsd~g~~~~~~t~~~n~~k~qe~~~Daa~~~~~t~~s~fs~is~~~ngs~~-----------e~~nelk~~~~~~t~~~~ 78 (1016)
T KOG2093|consen 10 DSDDGFSSNGGTPKANNPKSQEQFGDAAAWDAATGSSSFSGISISVNGSTD-----------ESANELKLQNMFHTGASA 78 (1016)
T ss_pred cccCchhhcCCCcccccchHHHHHhhhhhccCcCCcceeeeeeeccCCccc-----------cchHHHhhhhhhcccccc
Confidence 3477889999999999999999996332 334567899999999999998 999999999999999999
Q ss_pred -EeccCCccEEEeCCCChhhHhhcCCCCceeccChHHHHHHhCCCCCCcCceeeecCCCchhhHHhhhcccccCCCCccc
Q psy7164 1388 -HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYLLYTGTDAKPLTKLLQKSYFENTEAPCCS 1466 (2307)
Q Consensus 1388 -~~l~~~vTHIIas~l~~~K~~~~k~~~kIVkpeWI~DSI~~gklLp~~~Y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1466 (2307)
+|..+.+|||||..++..+.+.++ .-+..+++||++|+++|+.+...+|+++.++..-+ +.++ |..+..|- .
T Consensus 79 ~~~~rs~T~~ii~~~l~a~~vk~~~-~~~~~~~e~iie~~~~~~~~~~~~~~~~t~~~h~q--~~~~---~~~~~~~~-D 151 (1016)
T KOG2093|consen 79 ASYERSGTENIIAQGLPADLVKGFT-IPKHISIEWIIECCENGMDVGYYPYQLYTGQSHEQ--AQLA---FPVTSFPK-D 151 (1016)
T ss_pred cccccccceeeecccchHHHhcccc-chhhhcHHHHHHHHhccCccccccceeeccchhcc--cccC---CCcccCCc-c
Confidence 777889999999999999999998 68999999999999999999999999998752111 1011 00000000 0
Q ss_pred ccccccCCC--Cc--------ccCCCCCCcccc---------hhh----hccccccccccCCCcccccccc-cc------
Q psy7164 1467 KSLVETSSH--TS--------TVSDSVDNTEES---------KSE----AVNSEESKSEAANPIESKQTVK-TK------ 1516 (2307)
Q Consensus 1467 ~~~~~~~~~--~~--------~~~~~~~~~~~~---------~~~----~~~~~~~~~~~~~~~~~~~~~~-~~------ 1516 (2307)
++...-++. +. ..+...+-..+. .+. .++..-......++.- .+... .+
T Consensus 152 ~q~~~~~~ki~~~n~ikinG~~E~~~~dlepp~gv~~d~~~~~~~~~rd~v~~~l~~~~l~n~~f-~n~~~~sP~~~~~k 230 (1016)
T KOG2093|consen 152 QQISSQSSKIFKNNVIKINGYNEPESLDLEPPSGVLHDKAEDDSTSARDHVDHELAGNLLLNKRF-VNIENTSPDWIVDK 230 (1016)
T ss_pred ccccccchhccccceeeecCCCCccccccCCCcccccchhhhhhhhHHHHHHHHhcccccccccc-ceeeecCchhhhhh
Confidence 000000000 00 000000000000 000 0000000000001000 00000 00
Q ss_pred c---ccccccccCC----CCCCCCCCCCCCCC--ChHHHHhhcChhHHHHhhchHHHHHHHHHHHhcCC--CchhHHHHH
Q psy7164 1517 E---SKLETVNISA----PKPQASSTKNASNE--DFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDG--VFRGIEAIR 1585 (2307)
Q Consensus 1517 ~---~~~~~~~~~~----~~~~~~~~~~~~~p--~Fl~~fy~~SRLHhlstwk~~~k~~~~~l~~~~~~--~~~~~~~~~ 1585 (2307)
+ ......+.|. ......+...++.| +||++||++|||||+|+||+.+++||+.++....+ .|++++.+.
T Consensus 231 ~~~a~~~~~~~~Ss~~~TS~~~~~s~a~~~~~~~nfis~~~~ts~LH~~S~~k~~~~~~v~~~~r~~~gnn~~~kR~~~~ 310 (1016)
T KOG2093|consen 231 ELTAHTGTGQNYSSEMNTSGLSTYSIAADNKPTVNFISEFYSTSRLHKGSDNKGVHAQFVNGLKRQANGNNSFTKRESLK 310 (1016)
T ss_pred hhhhccCCcccccccccccccchhhhhcccCcccccccchhhhhhhhhcchhhhhHHhhhhccccccCCCCcccchhhhh
Confidence 0 0000011110 00111111222456 99999999999999999999999999999665554 556655443
Q ss_pred HhhhccCcCCcccccccccCCCCCCCCCCE----EEEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCC-ccccccccc
Q psy7164 1586 KWKTSLGITEDEDLEETFSDNPSPSEPEPV----IMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSS-KVREGVDRQ 1660 (2307)
Q Consensus 1586 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~r~----I~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s-~~~~~~~~~ 1660 (2307)
+.... +...|. .+|. ++|+||||||++|.++.+|++++.|+|+.+..+... ..+.+.+..
T Consensus 311 d~~nf--------~~ny~a-------~sRlh~is~~~~dmk~fF~nv~l~~k~~~kg~~~a~~~d~~ti~~i~~~~~~~~ 375 (1016)
T KOG2093|consen 311 DDPNF--------VENYFA-------NSRLHFISTWHNDMKDFFVNVGLRLKPALKGQPTAETADKGTIIHIDRPFASVK 375 (1016)
T ss_pred cCccH--------HHHHhc-------chhhhHHHHHHHhhhhhhhcccccCCccccCCceeeecccccccccccccchhH
Confidence 21110 011111 1233 566666666666666666666666555555443321 111222222
Q ss_pred chhhHH---------------------------hhhhcccCCHHHHHcCCCCCCcHHHHHHhCCCcEEecCChhHHHHHH
Q psy7164 1661 AEFDIY---------------------------RQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVS 1713 (2307)
Q Consensus 1661 ~~~~~~---------------------------~~~~i~scNY~AR~~GVk~GM~l~~A~kLCPdL~ivpydfe~Yr~~S 1713 (2307)
.+++.| +...|+||||+||+||||||||+++|++|||+|++|||||++|+++|
T Consensus 376 v~~dcf~~sv~~~n~~D~k~kpvav~hg~d~~~s~sEIASCsY~AR~~GIKNGMfV~~A~klCPqL~~lPY~FE~Ykevs 455 (1016)
T KOG2093|consen 376 VELDCFFVSVVIKNRLDLKDKPVAVCHGSDNPKSTSEIASCSYEARAYGIKNGMFVRHAKKLCPQLVILPYDFEAYKEVS 455 (1016)
T ss_pred HHHHHhhhhheeccccccccCcceeeccCCCCcchhhhhccccHHHHhCcccceeHHHHHHhCcccEeecccHHHHHHHH
Confidence 222222 12357899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCcccchhhhcccccccccCCCCCCcc
Q psy7164 1714 YCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPSPSPIL 1793 (2307)
Q Consensus 1714 ~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1793 (2307)
+.||++|++|+.+|++||| ||||+|+
T Consensus 456 ~tlYetlasytl~I~aVSC--DEa~vd~---------------------------------------------------- 481 (1016)
T KOG2093|consen 456 ETLYETLASYTLNIEAVSC--DEAFVDV---------------------------------------------------- 481 (1016)
T ss_pred HHHHHHHHhhccceeeecc--hhhhhhh----------------------------------------------------
Confidence 9999999999999999999 8988865
Q ss_pred cccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhcccchHHHHHHHhhcccccccchhh
Q psy7164 1794 DMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVGKKESTVW 1873 (2307)
Q Consensus 1794 d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ss~~ 1873 (2307)
T Consensus 482 -------------------------------------------------------------------------------- 481 (1016)
T KOG2093|consen 482 -------------------------------------------------------------------------------- 481 (1016)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchhccCCCHHHHHHHHHHHHHHHhCCeEEEEecCCHHHHH
Q psy7164 1874 AEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQAR 1953 (2307)
Q Consensus 1874 ~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~~~~~~~~~lA~~IR~~I~~~TG~tvSVGIA~NklLAK 1953 (2307)
+..+.....++..+|..||++|++.|||+||||||.|++|||
T Consensus 482 --------------------------------------s~~~~~~~~tp~~la~~IRqEI~e~TgC~aS~Gig~t~LLAR 523 (1016)
T KOG2093|consen 482 --------------------------------------SDLSDEENETPAVLAEHIRQEILEKTGCPASAGIGGTMLLAR 523 (1016)
T ss_pred --------------------------------------hhhhhhhccCHHHHHHHHHHHHHhccCCceeeccchHHHHHH
Confidence 000000112466899999999999999999999999999999
Q ss_pred HHhhccCCCCEEEeChhhHHHHhhcCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhCcchHHHHHHHhcCC
Q psy7164 1954 LATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGE 2033 (2307)
Q Consensus 1954 LASr~AKPnGq~~L~pe~v~~fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG~k~G~~L~~~arGi 2033 (2307)
||+|.|||||||++.++.+.+||.+++|.+|||||+++..||...||+|||||+.++...|++.||++.|.++|..|||+
T Consensus 524 lATr~AKP~Gq~~l~a~~veeFis~~~v~~LPGVG~sm~~kL~s~~i~tCgdLq~~T~~kl~k~~G~Klgq~i~~~CrG~ 603 (1016)
T KOG2093|consen 524 LATRVAKPNGQFYLSAEKVEEFISQLKVDDLPGVGSSMKSKLVSQFIQTCGDLQLITLIKLRKVFGPKLGQKIYRGCRGI 603 (1016)
T ss_pred HHHhhcCCCceeeecHHHHHHHhhhcccccCCCccHHHHHHHHHhccchhHHHHHHHHHHHHhhhcccHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCcccEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhccccceEEEEEEEEecCCCcccccccccCceee
Q psy7164 2034 DDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCD 2113 (2307)
Q Consensus 2034 D~~~V~~~~~rKSIs~e~nfg~r~~~~eel~~~L~~La~eL~~RLr~~~~~~r~LTLkL~~R~~~Ap~ep~K~lGhG~cD 2113 (2307)
|++|+.....|||+++++|||+||++..+++.||..+++||.+||.+.++.++++|||+|.|+++||++++||||||+||
T Consensus 604 Dd~P~~~~~~RKSvS~dIN~GIRFtn~~ev~~fl~~~~eEl~rkL~ei~k~~~sitLKlMvR~~~APietaK~mGhGiCD 683 (1016)
T KOG2093|consen 604 DDDPRSIEQVRKSVSADINYGIRFTNIKEVEQFLCLLSEELRRKLLEISKTASSITLKLMVRTAKAPIETAKYMGHGICD 683 (1016)
T ss_pred cCChHHHhhhhcceeeeeecceeeccHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhcCCCCCccccccceeecc
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecceeccCcCChhHHHHHHHHHHhhhcCCCCCceEEeeeeccccccccCCccCcchHHHHHHHHHHHHHhcCCCCccEE
Q psy7164 2114 YITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELR 2193 (2307)
Q Consensus 2114 ~~skS~~Lpt~~~~~L~~aA~~lL~~i~~~~~~yr~~Gv~l~dl~skq~~L~l~t~~~~~I~~e~~~L~r~~g~~~~~lR 2193 (2307)
.++|++.|..+ |+....|..++.+||+..+.++.++|
T Consensus 684 ~~~rs~~l~~~-------------------------------------------Td~~~iItt~~~~L~~t~~~~~~elR 720 (1016)
T KOG2093|consen 684 DFVRSSKLREP-------------------------------------------TDCNRIITTEVLRLYETNSEPPSELR 720 (1016)
T ss_pred chhhhhhccCc-------------------------------------------cccccchHHHHHHHHHhcCCChHHhc
Confidence 99999888544 34456788999999999999999999
Q ss_pred Eeeeecc-Cccccc
Q psy7164 2194 GIGIQVS-KLEHQS 2206 (2307)
Q Consensus 2194 gIGIq~s-kL~~~S 2206 (2307)
|+|++.+ +|.+.-
T Consensus 721 G~gi~~ntkL~~~~ 734 (1016)
T KOG2093|consen 721 GLGIHSNTKLMDVL 734 (1016)
T ss_pred cchhhccccccccc
Confidence 9999995 877643
No 16
>cd01701 PolY_Rev1 DNA polymerase Rev1. Rev1 is a translesion synthesis (TLS) polymerase found in eukaryotes. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Rev1 has both structural and enzymatic roles. Structurally, it is believed to interact with other nonclassical polymerases and replication machinery to act as a scaffold. Enzymatically, it catalyzes the specific insertion of dCMP opposite abasic sites. Rev1 interacts with the Rev7 subunit of the B-family TLS polymerase Pol zeta (Rev3/Rev7). Rev1 is known to actively promote the introduction of mutations, potentially making it a significant target for cancer treatment.
Probab=100.00 E-value=2.3e-72 Score=701.75 Aligned_cols=401 Identities=47% Similarity=0.803 Sum_probs=351.1
Q ss_pred hHHHHhhcChhHHHHhhchHHHHHHHHHHHhcCCCchhHHHHHHhhhccCcCCcccccccccCCCCCCCCCCEEEEEeCC
Q psy7164 1543 FLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMD 1622 (2307)
Q Consensus 1543 Fl~~fy~~SRLHhlstwk~~~k~~~~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~r~I~HvDmD 1622 (2307)
||++||++||||||||||+++++|+.+...... .|- ..+.......|+|+|||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~---------------~~~~~~~~~~r~i~hiD~d 55 (404)
T cd01701 1 FLENFFKHSRLHHISTWKARLKDFFRELSNGSK----------EAD---------------PSNSIHPDLQRIIMHVDFD 55 (404)
T ss_pred ChhHHhhhhhHHHHHHHHHHHHHHHHHHHhhcc----------cCC---------------CCCCCCCCCCcEEEEEeCc
Confidence 899999999999999999999999877643211 010 0112223567999999999
Q ss_pred cchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHHHHHHhCCCcEEe
Q psy7164 1623 CFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIV 1702 (2307)
Q Consensus 1623 ~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~~A~kLCPdL~iv 1702 (2307)
|||||||++.+|+|+++||||+++.+. + +.|++|||+||++||+.||++.+|+++||+|+++
T Consensus 56 ~FyasvE~~~~p~L~~kPv~V~~~~~~-----~-------------~~V~a~sy~AR~~GV~~gM~~~~A~~lcP~l~vv 117 (404)
T cd01701 56 CFFVSVSIRNRPDLKGKPVAVCHGKGP-----N-------------SEIASCNYEARSYGIKNGMWVGQAKKLCPQLVTL 117 (404)
T ss_pred hHHHHHHhhhCccccCCCEEEecCCCC-----C-------------eEEEecCHHHHhcCCCCCCcHHHHHHHCCCcEEE
Confidence 999999999999999999999985321 1 3467899999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCcccchhhhcccccc
Q psy7164 1703 PYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHT 1782 (2307)
Q Consensus 1703 pydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 1782 (2307)
|+|++.|+++|++|+++|.+|++.
T Consensus 118 ~~~~~~Y~~~s~~i~~il~~~s~~-------------------------------------------------------- 141 (404)
T cd01701 118 PYDFEAYEEVSLTFYEILASYTDN-------------------------------------------------------- 141 (404)
T ss_pred CCChHHHHHHHHHHHHHHHHhCCc--------------------------------------------------------
Confidence 999999999999999888776543
Q ss_pred cccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhcccchHHHHHHHhh
Q psy7164 1783 LVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLR 1862 (2307)
Q Consensus 1783 ~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1862 (2307)
T Consensus 142 -------------------------------------------------------------------------------- 141 (404)
T cd01701 142 -------------------------------------------------------------------------------- 141 (404)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchh-ccCCCHHHHHHHHHHHHHHHhCCeE
Q psy7164 1863 RHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQ-ELSLTPLQFASYLRETIAKETGCTC 1941 (2307)
Q Consensus 1863 ~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~-~~~~~~~~lA~~IR~~I~~~TG~tv 1941 (2307)
||++|+||+|+|++++.+ .++ ++..+|+.||++|++++|++|
T Consensus 142 ------------------------------------ve~~SiDE~~lDvt~~~~~~~~-~~~~la~~ir~~I~~~~gl~~ 184 (404)
T cd01701 142 ------------------------------------IEAVSCDEALIDITSLLEETYE-LPEELAEAIRNEIRETTGCSA 184 (404)
T ss_pred ------------------------------------eEEcccceEEEEcccccccccC-CHHHHHHHHHHHHHHHHCCCE
Confidence 345667777777777664 444 788999999999999999999
Q ss_pred EEEecCCHHHHHHHhhccCCCCEEEeChhhHHHHhhcCCCCCCCCCChhHHHHHHhcCCccchhhhcCC--HHHHHhhhC
Q psy7164 1942 STGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNIS--LKRLQNEVG 2019 (2307)
Q Consensus 1942 SVGIA~NklLAKLASr~AKPnGq~~L~pe~v~~fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp--~~~L~~~fG 2019 (2307)
|||||+|+++||||++.+||+|++++.++++.+||+++||++|||||+++.++|..+||+|++||++++ +..|+++||
T Consensus 185 siGia~nk~lAKlAs~~aKP~g~~~i~~~~~~~~L~~lPv~~l~GIG~~~~~~L~~~Gi~t~~dl~~~~~~~~~L~~~fG 264 (404)
T cd01701 185 SVGIGPNILLARLATRKAKPDGQYHLSAEKVEEFLSQLKVGDLPGVGSSLAEKLVKLFGDTCGGLELRSKTKEKLQKVLG 264 (404)
T ss_pred EEEEcCCHHHHHHHhcccCCCcEEEECHHHHHHHhhcCCHhHhCCCCHHHHHHHHHcCCcchHHHHhCcccHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred cchHHHHHHHhcCCCCCccccccCCcccEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhccccceEEEEEEEEecCCC
Q psy7164 2020 NKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEA 2099 (2307)
Q Consensus 2020 ~k~G~~L~~~arGiD~~~V~~~~~rKSIs~e~nfg~r~~~~eel~~~L~~La~eL~~RLr~~~~~~r~LTLkL~~R~~~A 2099 (2307)
.+.|.+||+.|+|+|++++.+..++|||+.+.+|+.++.+.+++..+|.+|+.+|+.||+++++.+++|+|+|++|..++
T Consensus 265 ~~~g~~L~~~a~G~d~~~v~~~~~~ksi~~~~tf~~~~~~~~~l~~~l~~L~~~l~~rLr~~~~~~~~l~l~l~~~~~~~ 344 (404)
T cd01701 265 PKTGEKLYDYCRGIDDRPVTGEKERKSVSAEINYGIRFTNVDDVEQFLQRLSEELSKRLEESNVTGRQITLKLMKRAPGA 344 (404)
T ss_pred HHHHHHHHHHhCCcCCCCCCCCCCCccccceeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCceeeEEEEEEeccccC
Confidence 77899999999999999999888899999999999999999999999999999999999999999999999999988888
Q ss_pred cccccccccCceeeeecceeccCcCChhHHHHHHHHHHhhhcCCCCCceEEeeeeccccccccCCccCcchHHHHHHHHH
Q psy7164 2100 PREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVL 2179 (2307)
Q Consensus 2100 p~ep~K~lGhG~cD~~skS~~Lpt~~~~~L~~aA~~lL~~i~~~~~~yr~~Gv~l~dl~skq~~L~l~t~~~~~I~~e~~ 2179 (2307)
+.++++|+|||.|+..+++.+|+.+ |++...|.+++.
T Consensus 345 ~~~~~~y~g~~~~~~~~~~~~l~~p-------------------------------------------T~d~~~i~~~a~ 381 (404)
T cd01701 345 PIEPPKYMGHGICDSFSKSSTLGVA-------------------------------------------TDDSGVIGTEAK 381 (404)
T ss_pred ccccccccccCCCcEEeeeeECCCC-------------------------------------------CCCHHHHHHHHH
Confidence 8889999999999998888777533 445566777777
Q ss_pred HHHHhcCCCCccEEEeeeeccCc
Q psy7164 2180 FIVNKLKVDPVELRGIGIQVSKL 2202 (2307)
Q Consensus 2180 ~L~r~~g~~~~~lRgIGIq~skL 2202 (2307)
.||+++..+...+|+|||++++|
T Consensus 382 ~ll~~~~~~~~~vR~lgv~~~~l 404 (404)
T cd01701 382 KLFRDLSIPPEELRGVGIQVTKL 404 (404)
T ss_pred HHHHhccCCCCCeeEEEEEEecC
Confidence 77777654446788888888765
No 17
>PTZ00205 DNA polymerase kappa; Provisional
Probab=100.00 E-value=3.6e-61 Score=602.31 Aligned_cols=355 Identities=25% Similarity=0.356 Sum_probs=301.2
Q ss_pred CCEEEEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHHHH
Q psy7164 1613 EPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHA 1692 (2307)
Q Consensus 1613 ~r~I~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~~A 1692 (2307)
.++|+||||||||||||++++|+|+++||||++. ++|+||||+||+|||+.||++++|
T Consensus 132 l~~I~HVDmDaFYASVE~~~~PeLrgkPvaVg~~----------------------gvV~TaSYeARk~GVrsgMp~~~A 189 (571)
T PTZ00205 132 LGTYIHLDMDMFYAAVEIKKHPEYAAIPLAIGTM----------------------TMLQTANYVARGRGIRQGMPGFLA 189 (571)
T ss_pred CCeEEEEecCcHhhhhheccCccccCCcEEEccC----------------------CEEEEcCHHHHhhCCCcCCcHHHH
Confidence 3699999999999999999999999999999751 246799999999999999999999
Q ss_pred HHhCCCcEEecCChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCcccc
Q psy7164 1693 LKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLA 1772 (2307)
Q Consensus 1693 ~kLCPdL~ivpydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~~ 1772 (2307)
++|||+|++||+||+.|+++|.+|+++|.+|+|.||++|| ||+|+|+
T Consensus 190 kkLCP~Liivp~d~~~Y~~~S~~I~~il~~ysp~ve~~SI--DEafLDl------------------------------- 236 (571)
T PTZ00205 190 LKICPNLLILPPDFDAYNEESNTVRRIVAEYDPNYISFGL--DELTLEV------------------------------- 236 (571)
T ss_pred HHhCCCCcEecCCHHHHHHHHHHHHHHHHhcCCcEEEeec--hhceecc-------------------------------
Confidence 9999999999999999999999999999998887777777 6777654
Q ss_pred hhhhcccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhcccc
Q psy7164 1773 QDIICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLN 1852 (2307)
Q Consensus 1773 ~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~ 1852 (2307)
T Consensus 237 -------------------------------------------------------------------------------- 236 (571)
T PTZ00205 237 -------------------------------------------------------------------------------- 236 (571)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchhccC--CCHHHHHHHHH
Q psy7164 1853 PIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELS--LTPLQFASYLR 1930 (2307)
Q Consensus 1853 ~~~~~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~~~~--~~~~~lA~~IR 1930 (2307)
+++...+. .++.++|+.||
T Consensus 237 -----------------------------------------------------------T~~~~~~~~~~~~~~iA~~IR 257 (571)
T PTZ00205 237 -----------------------------------------------------------SAYIERFEGTKTAEDVASELR 257 (571)
T ss_pred -----------------------------------------------------------CCchhhccCCCCHHHHHHHHH
Confidence 22221111 14678999999
Q ss_pred HHHHHHhCCeEEEEecCCHHHHHHHhhccCCCCEEEe---ChhhHHHHhhcCCCCCCCCCChhHHHHHHhcCCccchhhh
Q psy7164 1931 ETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHL---TPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQ 2007 (2307)
Q Consensus 1931 ~~I~~~TG~tvSVGIA~NklLAKLASr~AKPnGq~~L---~pe~v~~fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~ 2007 (2307)
++|+++||||||||||+|++|||||++.+||||++++ .++++.+||++|||++|||||+++.++|+.+||+||+||+
T Consensus 258 ~~I~~~tgLt~SiGIA~NklLAKiASd~~KPnG~~vl~l~~~~~v~~fL~~LpV~ki~GIG~~t~~~L~~~GI~TigDLa 337 (571)
T PTZ00205 258 VRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDLNLHTRGDVMTYVRDLGLRSVPGVGKVTEALLKGLGITTLSDIY 337 (571)
T ss_pred HHHHHHHCCcEEEEEcCCHHHHHHhhhccCCCCCeEEecCCHHHHHHHHhCCCcceeCCcCHHHHHHHHHcCCCcHHHHh
Confidence 9999999999999999999999999999999999987 6789999999999999999999999999999999999999
Q ss_pred cCCHH--------HHHhhhCcchHHHHHHHhcCCCCCcccc---ccCCcccEEEEecCcCCCCHHHHHHHHHHHHHHHHH
Q psy7164 2008 NISLK--------RLQNEVGNKNGLTLYKHCRGEDDKELTF---EHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEK 2076 (2307)
Q Consensus 2008 ~lp~~--------~L~~~fG~k~G~~L~~~arGiD~~~V~~---~~~rKSIs~e~nfg~r~~~~eel~~~L~~La~eL~~ 2076 (2307)
+.+.. .+...||...|..+|..++|+|.++... ...+|||+.+++|+. ..+.+++...|..||.+|+.
T Consensus 338 ~~~~~l~~~f~~k~l~~llG~~~G~~l~~~a~G~d~~~~v~~~~~~~rKSIg~ErTF~~-~~d~~el~~~L~~L~~~v~~ 416 (571)
T PTZ00205 338 NRRVELCYILHNNLFRFLLGASIGIMQWPDAATAANTENCEGATGGQRKAISSERSFTT-PRTKEGLQEMVDTVFNGAYE 416 (571)
T ss_pred cCCHHHHHHhHHHHHHHHhCchhhHHHHHHhcCCCCCCccCCCCCCCCceeEEeEeCCC-CCCHHHHHHHHHHHHHHHHH
Confidence 98866 4778899778999999999999884332 457899999999986 68999999999999999999
Q ss_pred HHHhccccceEEEEEEEEecCCCcccccccccCceeeeecceeccCcCChhHHHHHHHHHHhhhcCCCCCceEEeeeecc
Q psy7164 2077 RLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCD 2156 (2307)
Q Consensus 2077 RLr~~~~~~r~LTLkL~~R~~~Ap~ep~K~lGhG~cD~~skS~~Lpt~~~~~L~~aA~~lL~~i~~~~~~yr~~Gv~l~d 2156 (2307)
||++.++.+++|+|+|++..+. ..+++.
T Consensus 417 rLrk~~l~artVtlKlK~~dF~---------------~~trs~------------------------------------- 444 (571)
T PTZ00205 417 EMRKSELMCRQISLTIRWASYR---------------YQQYTK------------------------------------- 444 (571)
T ss_pred HHHhcCCCccEEEEEEEECCCC---------------ceEEEE-------------------------------------
Confidence 9999999999999999994431 112233
Q ss_pred ccccccCCccCcchHHHHHHHHHHHHHhcCCCCccEEEeeeeccCcccc--------cccccchhhhhhccC
Q psy7164 2157 YITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSKLEHQ--------SKTLATIDTFFTNKG 2220 (2307)
Q Consensus 2157 l~skq~~L~l~t~~~~~I~~e~~~L~r~~g~~~~~lRgIGIq~skL~~~--------S~~~tTid~f~~~ka 2220 (2307)
+++.++++...|..++..||+....+...+|+|||++++|... ...+.+|.+|...+.
T Consensus 445 ------tL~~pT~d~~~I~~aa~~Ll~~~~~~~~~vRLlGV~ls~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (571)
T PTZ00205 445 ------SLIQYSDDSATLRRAVDGLLLPHAAKYSEMCLLGVRFLDLISAKDFHMKRKGGNQLSISQFIRPKK 510 (571)
T ss_pred ------ECCCCcCCHHHHHHHHHHHHHhccccCCCEEEEEEEEcccCcHHHHHHHhcCCceeeHHHHcCCCC
Confidence 3344566677788888888876522346899999999998773 345667888875443
No 18
>PRK01810 DNA polymerase IV; Validated
Probab=100.00 E-value=4.7e-60 Score=592.73 Aligned_cols=373 Identities=26% Similarity=0.405 Sum_probs=326.6
Q ss_pred CCCEEEEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHHH
Q psy7164 1612 PEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGH 1691 (2307)
Q Consensus 1612 ~~r~I~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~~ 1691 (2307)
..|+|+||||||||||||++.+|+|+++||||+++..+ +.+.|++|||+||++||++||++.+
T Consensus 3 ~~r~i~hiD~d~Fyasve~~~~p~l~~~Pv~V~~~~~~-----------------~~~~v~a~ny~Ar~~GV~~Gm~~~~ 65 (407)
T PRK01810 3 KGRVIFHVDMNSFFASVEIAYDPSLQGKPLAVAGNEKE-----------------RKGIIVTCSYEARAYGIRTTMPLWE 65 (407)
T ss_pred CCCEEEEEecCcHHHhHHhhhCccccCCcEEEeCCCCC-----------------CCeEEEEcCHHHHHhCCCCCChHHH
Confidence 35899999999999999999999999999999974211 0235779999999999999999999
Q ss_pred HHHhCCCcEEecCChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCccc
Q psy7164 1692 ALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPL 1771 (2307)
Q Consensus 1692 A~kLCPdL~ivpydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~ 1771 (2307)
|+++||+|+++|+|++.|+++|.+|++++.+|++.|
T Consensus 66 A~~lcP~l~~~~~d~~~y~~~s~~i~~~l~~~sp~v-------------------------------------------- 101 (407)
T PRK01810 66 AKRLCPQLIVRRPNFDRYREASRQMFQILSEFTPLV-------------------------------------------- 101 (407)
T ss_pred HHHHCCCeEEECCChHHHHHHHHHHHHHHHHhCCce--------------------------------------------
Confidence 999999999999999999999999998887765443
Q ss_pred chhhhcccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhccc
Q psy7164 1772 AQDIICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHL 1851 (2307)
Q Consensus 1772 ~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~ 1851 (2307)
T Consensus 102 -------------------------------------------------------------------------------- 101 (407)
T PRK01810 102 -------------------------------------------------------------------------------- 101 (407)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chHHHHHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchhccCCCHHHHHHHHHH
Q psy7164 1852 NPIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRE 1931 (2307)
Q Consensus 1852 ~~~~~~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~~~~~~~~~lA~~IR~ 1931 (2307)
+.+|+||+|+|++++.+++ ++.++|+.||+
T Consensus 102 ------------------------------------------------e~~siDe~~ldvt~~~~~~--~~~~~a~~i~~ 131 (407)
T PRK01810 102 ------------------------------------------------QPVSIDEGYLDITDCYALG--SPLEIAKMIQQ 131 (407)
T ss_pred ------------------------------------------------EEecCCeEEEeccCccccC--CHHHHHHHHHH
Confidence 4556677777777665543 57789999999
Q ss_pred HHHHHhCCeEEEEecCCHHHHHHHhhccCCCCEEEeChhhHHHHhhcCCCCCCCCCChhHHHHHHhcCCccchhhhcCCH
Q psy7164 1932 TIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISL 2011 (2307)
Q Consensus 1932 ~I~~~TG~tvSVGIA~NklLAKLASr~AKPnGq~~L~pe~v~~fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~ 2011 (2307)
.|++++||+||||||+|+++||||++.+||+|++++.++++.+||+++||++|||||+++.++|+.+||+|++||+++|+
T Consensus 132 ~i~~~~gl~~svGia~n~~lAklas~~~Kp~g~~vi~~~~~~~~L~~lpv~~l~giG~~~~~~L~~~Gi~tigdL~~~~~ 211 (407)
T PRK01810 132 RLLTELQLPCSIGIAPNKFLAKMASDMKKPLGITVLRKRDVPEMLWPLPVGEMHGIGEKTAEKLKDIGIQTIGDLAKADE 211 (407)
T ss_pred HHHHHHCCceEEEEcCCHHHHHHHhcCCCCCCEEEECHHHHHHHHHhCCHhhcCCcCHHHHHHHHHcCCCcHHHHHhCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCcchHHHHHHHhcCCCCCccccccC--CcccEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhccccceEEE
Q psy7164 2012 KRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQ--RKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCIT 2089 (2307)
Q Consensus 2012 ~~L~~~fG~k~G~~L~~~arGiD~~~V~~~~~--rKSIs~e~nfg~r~~~~eel~~~L~~La~eL~~RLr~~~~~~r~LT 2089 (2307)
..|.++|| ..|.++|+.|+|+|++++.+..+ +|||+.+.+|+.++.+.+++..+|.+|+.+|+.||+++++.+++|+
T Consensus 212 ~~L~~rfG-~~g~~l~~~a~G~d~~~v~~~~~~~~ksi~~~~~~~~~~~~~~~l~~~l~~L~~~l~~rLr~~~~~~~~l~ 290 (407)
T PRK01810 212 HILRAKLG-INGVRLQRRANGIDDRPVDPEAIYQFKSVGNSTTLSHDMDEEKELLDVLRRLSKSVSKRLQKKTVVSYNVQ 290 (407)
T ss_pred HHHHHHHh-HHHHHHHHHhcCCCCCCCCCCCCCCCceecceEECCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccceeE
Confidence 99999999 68999999999999999987653 6999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCcccccccccCceeeeecceeccCcCChhHHHHHHHHHHhhhcCCCCCceEEeeeecccccc---ccCCcc
Q psy7164 2090 LKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITK---SSSLPM 2166 (2307)
Q Consensus 2090 LkL~~R~~~Ap~ep~K~lGhG~cD~~skS~~Lpt~~~~~L~~aA~~lL~~i~~~~~~yr~~Gv~l~dl~sk---q~~L~l 2166 (2307)
|+|++.... ....+++...|+++...|..+++.++++++ .+..++.+|+.+.++.+. ..++++
T Consensus 291 l~lr~~~~~-------------~~~~~~~l~~pt~~~~~l~~~~~~ll~~~~-~~~~vr~lgv~~~~l~~~~~~~~q~~L 356 (407)
T PRK01810 291 IMIRYHDRR-------------TITRSKTLKNPIWEKRDIFQAASRLFKQHW-NGDPVRLLGVTATDLEWKTEAVKQLDL 356 (407)
T ss_pred EEEEECCCC-------------ceEEEEECCCCCCCHHHHHHHHHHHHHhcc-CCCCEEEEEEEEecCcccccccccccc
Confidence 999985331 122344445588888999999999999986 456899999999999865 345677
Q ss_pred Ccc----hHHHHHHHHHHHHHhcCCCCc
Q psy7164 2167 YIS----QASQILKEVLFIVNKLKVDPV 2190 (2307)
Q Consensus 2167 ~t~----~~~~I~~e~~~L~r~~g~~~~ 2190 (2307)
|.. ....+.+.++.|..+||.+..
T Consensus 357 f~~~~~~~~~~l~~~id~l~~r~G~~ai 384 (407)
T PRK01810 357 FSFEEDAKEEPLLAVIDQINDKYGMPLL 384 (407)
T ss_pred ccchhhhhHHHHHHHHHHHHHhcCcchh
Confidence 752 344789999999999997544
No 19
>PRK03609 umuC DNA polymerase V subunit UmuC; Reviewed
Probab=100.00 E-value=5.3e-60 Score=594.39 Aligned_cols=401 Identities=18% Similarity=0.212 Sum_probs=346.7
Q ss_pred EEEEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHHHHHH
Q psy7164 1615 VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALK 1694 (2307)
Q Consensus 1615 ~I~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~~A~k 1694 (2307)
.|+||||||||||||++.||+|+|+||||++++ + +.|++|||+||++||+.||++.+|++
T Consensus 1 ~~~hvD~d~FfaS~E~~~~p~l~g~Pv~V~~~~-------~-------------g~V~aasyeAr~~GV~~gmp~~~a~~ 60 (422)
T PRK03609 1 MFALCDVNSFYASCETVFRPDLRGKPVVVLSNN-------D-------------GCVIARSAEAKALGIKMGDPWFKQKD 60 (422)
T ss_pred CEEEEecCcceeeeeeccCccccCCcEEEEECC-------C-------------cEEEEcCHHHHHhCCCCCCcHHHHHH
Confidence 389999999999999999999999999999742 1 24678999999999999999999999
Q ss_pred hCC--CcEEecCChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCcccc
Q psy7164 1695 KCP--NLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLA 1772 (2307)
Q Consensus 1695 LCP--dL~ivpydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~~ 1772 (2307)
+|| +|+++++|++.|.++|++|+++|.+|+|.
T Consensus 61 l~~~~~l~~~~~d~~~y~~~s~~i~~~l~~~tp~---------------------------------------------- 94 (422)
T PRK03609 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPR---------------------------------------------- 94 (422)
T ss_pred HhccCCeEEeCCCHHHHHHHHHHHHHHHHHhCCC----------------------------------------------
Confidence 994 39999999999999999999888766543
Q ss_pred hhhhcccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhcccc
Q psy7164 1773 QDIICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLN 1852 (2307)
Q Consensus 1773 ~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~ 1852 (2307)
T Consensus 95 -------------------------------------------------------------------------------- 94 (422)
T PRK03609 95 -------------------------------------------------------------------------------- 94 (422)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchhccCCCHHHHHHHHHHH
Q psy7164 1853 PIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRET 1932 (2307)
Q Consensus 1853 ~~~~~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~~~~~~~~~lA~~IR~~ 1932 (2307)
||++||||+|+|++++.++ + ++..+|++||+.
T Consensus 95 ----------------------------------------------ve~~siDE~~lDvt~~~~l-~-~~~~~a~~i~~~ 126 (422)
T PRK03609 95 ----------------------------------------------VEIYSIDEAFCDLTGVRNC-R-DLTDFGREIRAT 126 (422)
T ss_pred ----------------------------------------------ceEeccccceecCCCCcCC-C-CHHHHHHHHHHH
Confidence 4456777778888777654 2 578899999999
Q ss_pred HHHHhCCeEEEEecCCHHHHHHHhhccCC-----CCEEEe-ChhhHHHHhhcCCCCCCCCCChhHHHHHHhcCCccchhh
Q psy7164 1933 IAKETGCTCSTGFGSNKLQARLATKKAKP-----NGQFHL-TPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDL 2006 (2307)
Q Consensus 1933 I~~~TG~tvSVGIA~NklLAKLASr~AKP-----nGq~~L-~pe~v~~fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL 2006 (2307)
|++++|++||||||+|+++||||++.+|| +|++++ .++...+||+++||++|||||+++.++|+.+||+||+||
T Consensus 127 I~~~~gl~~siGia~n~~lAK~As~~~k~~~k~~~g~~~i~~~~~~~~~L~~lPv~~l~GiG~~~~~~L~~lGi~TigdL 206 (422)
T PRK03609 127 VLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLLSLQPVEEVWGVGRRISKKLNAMGIKTALDL 206 (422)
T ss_pred HHHHHCCceEEEecCCHHHHHHHHHHhCCCCCCCCcEEEcCCHHHHHHHhhcCChhhcCCccHHHHHHHHHcCCCcHHHH
Confidence 99999999999999999999999998886 688877 588999999999999999999999999999999999999
Q ss_pred hcCCHHHHHhhhCcchHHHHHHHhcCCCCCccccccC-CcccEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhccccc
Q psy7164 2007 QNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQ-RKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKG 2085 (2307)
Q Consensus 2007 ~~lp~~~L~~~fG~k~G~~L~~~arGiD~~~V~~~~~-rKSIs~e~nfg~r~~~~eel~~~L~~La~eL~~RLr~~~~~~ 2085 (2307)
+++|+..|+++|| ..|..+|+.++|+|+.++....+ +|||+.+.+|+.++.+.+++...+.+|+.+|+.||+++++.+
T Consensus 207 ~~~~~~~L~~~fG-~~~~~l~~~a~G~~~~~~~~~~~~~ksi~~~~tf~~~~~~~~~l~~~l~~l~~~l~~rLr~~~~~~ 285 (422)
T PRK03609 207 ADTNIRFIRKHFN-VVLERTVRELRGEPCLSLEEFAPTKQEIVCSRSFGERITDYESMRQAICSYAARAAEKLRGEHQYC 285 (422)
T ss_pred hcCCHHHHHHHHC-HHHHHHHHHhCCCCCCCccccCCCCceEEEeeECCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 9999999999999 79999999999999999987665 479999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEecCCCcccccccccCceeeeecce--eccCcCChhHHHHHHHHHHhhhcCCCCCceEEeeeecccccc-cc
Q psy7164 2086 KCITLKLMVRSAEAPREASKFLGHGVCDYITKS--SSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITK-SS 2162 (2307)
Q Consensus 2086 r~LTLkL~~R~~~Ap~ep~K~lGhG~cD~~skS--~~Lpt~~~~~L~~aA~~lL~~i~~~~~~yr~~Gv~l~dl~sk-q~ 2162 (2307)
++|+|+|++..+.- .++ .+..+++ ...|+.+...|+++++.+|++++.++..++.+||.+.++.+. ..
T Consensus 286 ~~l~l~ir~~~~~~-~~~--------~~~~~~~~~l~~pt~d~~~l~~~a~~ll~~~~~~~~~~r~~GV~~~~l~~~~~~ 356 (422)
T PRK03609 286 RFISTFVKTSPFAL-NEP--------YYGNSASVKLLTPTQDSRDIIAAATRALDAIWRDGHRYQKAGVMLGDFFSQGVA 356 (422)
T ss_pred cEEEEEEEcCCccc-cCC--------CcCceeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCceEEeeEEEEeeccCCCc
Confidence 99999999844320 000 1122333 344788889999999999999998888899999999988763 34
Q ss_pred CCccCcc-----hHHHHHHHHHHHHHhcCCCCccEEEeeeecc---Ccccccccccc-hhhhhhcc
Q psy7164 2163 SLPMYIS-----QASQILKEVLFIVNKLKVDPVELRGIGIQVS---KLEHQSKTLAT-IDTFFTNK 2219 (2307)
Q Consensus 2163 ~L~l~t~-----~~~~I~~e~~~L~r~~g~~~~~lRgIGIq~s---kL~~~S~~~tT-id~f~~~k 2219 (2307)
++++|.. ..+.+++.++.|..+||.+.......|+... +.+..|++||| |+++++++
T Consensus 357 q~~LF~~~~~~~~~~~l~~~iD~i~~r~G~~~i~~a~~~~~~~w~~~~~~~s~~ytt~~~~l~~~~ 422 (422)
T PRK03609 357 QLNLFDDNAPRPGSEQLMKVLDTLNAKSGKGTLYFAGQGIAQQWQMKREMLSPRYTTRWSDLLRVK 422 (422)
T ss_pred CccCccccccccchHHHHHHHHHHHHhhCCCeEEECCCCCCCCccCchhhcCCCCCCCHHHcceeC
Confidence 6677753 3568999999999999988888777777532 67789999999 99998754
No 20
>PRK03858 DNA polymerase IV; Validated
Probab=100.00 E-value=7.8e-60 Score=588.93 Aligned_cols=369 Identities=23% Similarity=0.378 Sum_probs=326.5
Q ss_pred CCEEEEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHHHH
Q psy7164 1613 EPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHA 1692 (2307)
Q Consensus 1613 ~r~I~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~~A 1692 (2307)
.|+|+||||||||||||++.||+|+++||||+++ .|++|||+||++||++||++.+|
T Consensus 3 ~~~i~hiD~d~Fyas~e~~~~p~l~~~Pv~V~~~-----------------------~V~a~sy~Ar~~GV~~gm~~~~A 59 (396)
T PRK03858 3 DASILHADLDSFYASVEQRDDPALRGRPVIVGGG-----------------------VVLAASYEAKAYGVRTAMGGRQA 59 (396)
T ss_pred CCEEEEEccChHHHHHHhhhCccccCCcEEEeCC-----------------------EEEEeCHHHHHhCCCCCChHHHH
Confidence 5899999999999999999999999999999842 36799999999999999999999
Q ss_pred HHhCCCcEEecCChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCcccc
Q psy7164 1693 LKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLA 1772 (2307)
Q Consensus 1693 ~kLCPdL~ivpydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~~ 1772 (2307)
+++||+|+++|+|++.|+++|+++++++.+|++
T Consensus 60 ~~lcP~l~~~~~d~~~y~~~s~~i~~~l~~~s~----------------------------------------------- 92 (396)
T PRK03858 60 RRLCPQAVVVPPRMSAYSRASKAVFEVFRDTTP----------------------------------------------- 92 (396)
T ss_pred HHHCCCeEEECCCHHHHHHHHHHHHHHHHHhCC-----------------------------------------------
Confidence 999999999999999999999999987776543
Q ss_pred hhhhcccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhcccc
Q psy7164 1773 QDIICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLN 1852 (2307)
Q Consensus 1773 ~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~ 1852 (2307)
T Consensus 93 -------------------------------------------------------------------------------- 92 (396)
T PRK03858 93 -------------------------------------------------------------------------------- 92 (396)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchhccCCCHHHHHHHHHHH
Q psy7164 1853 PIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRET 1932 (2307)
Q Consensus 1853 ~~~~~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~~~~~~~~~lA~~IR~~ 1932 (2307)
.||.+|+||+|+|++++.++++ ++.++|+.||++
T Consensus 93 ---------------------------------------------~ve~~siDe~~ldvt~~~~~~~-~~~~la~~ir~~ 126 (396)
T PRK03858 93 ---------------------------------------------LVEGLSIDEAFLDVGGLRRISG-TPVQIAARLRRR 126 (396)
T ss_pred ---------------------------------------------ceEEecCCeEEEEccccccccC-CHHHHHHHHHHH
Confidence 3456677888888888877776 788999999999
Q ss_pred HHHHhCCeEEEEecCCHHHHHHHhhccCCCCEEEeChhhHHHHhhcCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHH
Q psy7164 1933 IAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLK 2012 (2307)
Q Consensus 1933 I~~~TG~tvSVGIA~NklLAKLASr~AKPnGq~~L~pe~v~~fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~ 2012 (2307)
|++++|++||||||+|+++||||++.+||+|++++.++++..||+++||++|||||+++.++|+++||+||+||+++|+.
T Consensus 127 i~~~~gl~~svGia~n~~lAklas~~~Kp~g~~~i~~~~~~~~L~~lpl~~l~Gig~~~~~~L~~~Gi~t~~dl~~l~~~ 206 (396)
T PRK03858 127 VREEVGLPITVGVARTKFLAKVASQVAKPDGLLVVPPDRELAFLHPLPVRRLWGVGPVTAAKLRAHGITTVGDVAELPES 206 (396)
T ss_pred HHHHHCCCeEEEEcCChHHHHHhhcccCCCceEEECcHHHHHHHhcCChhhcCCCCHHHHHHHHHhCCCcHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCcchHHHHHHHhcCCCCCccccccCCcccEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhccccceEEEEEE
Q psy7164 2013 RLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKL 2092 (2307)
Q Consensus 2013 ~L~~~fG~k~G~~L~~~arGiD~~~V~~~~~rKSIs~e~nfg~r~~~~eel~~~L~~La~eL~~RLr~~~~~~r~LTLkL 2092 (2307)
.|.++||...|.+||+.++|+|++++.+..++|||+.+.+|+.++.+.+++..+|.+||.+|+.||+++++.+++++|++
T Consensus 207 ~L~~~fG~~~~~~l~~~a~G~d~~~v~~~~~~ksi~~~~t~~~~~~~~~~l~~~l~~L~~~l~~rLr~~~~~~~~l~l~l 286 (396)
T PRK03858 207 ALVSLLGPAAGRHLHALAHNRDPRRVETGRRRRSVGAQRALGRGPNSPAEVDAVVVALVDRVARRMRAAGRTGRTVVLRL 286 (396)
T ss_pred HHHHHhCcHHHHHHHHHhCCCCCCCCCCCCCCccccceeEcCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEEE
Confidence 99999997789999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCcccccccccCceeeeecceeccCcCChhHHHHHHHHHHhhhcC--CCCCceEEeeeeccccccc-cCCcc-Cc
Q psy7164 2093 MVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEA--PREASKFLGHGVCDYITKS-SSLPM-YI 2168 (2307)
Q Consensus 2093 ~~R~~~Ap~ep~K~lGhG~cD~~skS~~Lpt~~~~~L~~aA~~lL~~i~~--~~~~yr~~Gv~l~dl~skq-~~L~l-~t 2168 (2307)
++..++ ....+++...|+++...|..+++.+++.++. ...+++.+|+.+.++.... .++++ |.
T Consensus 287 ~~~~~~-------------~~~~~~~l~~~t~~~~~l~~l~~~ll~~~~~~~~~~~irligv~~~~l~~~~~~q~~L~f~ 353 (396)
T PRK03858 287 RFDDFT-------------RATRSHTLPRPTASTATLLAAARDLVAAAAPLIAERGLTLVGFAVSNLDDDGAQQLELPFG 353 (396)
T ss_pred EeCCCC-------------EEEEEEECCCCcCCHHHHHHHHHHHHHhhhhccCCCCeEEEEEEeecCCcccccccCCCcc
Confidence 984321 1122334444777889999999999998753 2467999999998887532 34555 43
Q ss_pred --chHHHHHHHHHHHHHhcCCCCc
Q psy7164 2169 --SQASQILKEVLFIVNKLKVDPV 2190 (2307)
Q Consensus 2169 --~~~~~I~~e~~~L~r~~g~~~~ 2190 (2307)
.....+.+.++.|..++|.+..
T Consensus 354 ~~~~~~~l~~~id~l~~r~G~~~i 377 (396)
T PRK03858 354 LRRPGSALDAALDAVRDRFGNAAV 377 (396)
T ss_pred chhhHHHHHHHHHHHHHhhCchhh
Confidence 2445789999999999996543
No 21
>PRK03103 DNA polymerase IV; Reviewed
Probab=100.00 E-value=7.5e-60 Score=591.23 Aligned_cols=374 Identities=23% Similarity=0.352 Sum_probs=329.5
Q ss_pred CCEEEEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHHHH
Q psy7164 1613 EPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHA 1692 (2307)
Q Consensus 1613 ~r~I~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~~A 1692 (2307)
.|+|+||||||||||||++.+|+|+++||||++..+.. .+.|++|||+||++||++||++.+|
T Consensus 2 ~r~i~hiD~d~Ffasve~~~~P~l~~~Pv~V~~~~~~~-----------------~~~v~a~sy~Ar~~GV~~gm~~~~A 64 (409)
T PRK03103 2 ERVILLVDMQSFYASVEKAANPELKGRPVIVSGDPERR-----------------SGVVLAACPLAKAYGVKTAERLWEA 64 (409)
T ss_pred CCEEEEEecchHHHhHhcccChhhcCCcEEEeccCCCC-----------------CEEEEEcCHHHHHhCCCCCChHHHH
Confidence 48999999999999999999999999999999742111 1247799999999999999999999
Q ss_pred HHhCCCcEEecCChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCcccc
Q psy7164 1693 LKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLA 1772 (2307)
Q Consensus 1693 ~kLCPdL~ivpydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~~ 1772 (2307)
+++||+|+++|+|++.|+++|++|++++.+|++
T Consensus 65 ~~lcP~l~~~~~d~~~y~~~s~~i~~~l~~~sp----------------------------------------------- 97 (409)
T PRK03103 65 QQKCPDLVVVKPRMQRYIDVSLQITRILEDFTD----------------------------------------------- 97 (409)
T ss_pred HHHCCCeEEECCCHHHHHHHHHHHHHHHHHhCc-----------------------------------------------
Confidence 999999999999999999999999988776543
Q ss_pred hhhhcccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhcccc
Q psy7164 1773 QDIICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLN 1852 (2307)
Q Consensus 1773 ~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~ 1852 (2307)
T Consensus 98 -------------------------------------------------------------------------------- 97 (409)
T PRK03103 98 -------------------------------------------------------------------------------- 97 (409)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchhccCCCHHHHHHHHHHH
Q psy7164 1853 PIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRET 1932 (2307)
Q Consensus 1853 ~~~~~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~~~~~~~~~lA~~IR~~ 1932 (2307)
.|+++|+||+|+|++++.++++ ++.++|++||++
T Consensus 98 ---------------------------------------------~ve~~siDe~~lDvt~~~~~~~-~~~~la~~ir~~ 131 (409)
T PRK03103 98 ---------------------------------------------LVEPFSIDEQFLDVTGSQKLFG-SPLEIAQKIQQR 131 (409)
T ss_pred ---------------------------------------------cceecCCCeeEeeccchhhcCC-CHHHHHHHHHHH
Confidence 3455677888888888877776 788999999999
Q ss_pred HHHHhCCeEEEEecCCHHHHHHHhhc---cCCCCEEEeChhhHHHHhhcCCCCCCCCCChhHHHHHHhcCCccchhhhcC
Q psy7164 1933 IAKETGCTCSTGFGSNKLQARLATKK---AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNI 2009 (2307)
Q Consensus 1933 I~~~TG~tvSVGIA~NklLAKLASr~---AKPnGq~~L~pe~v~~fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~l 2009 (2307)
|++++||+||||||+|+++||||++. +||+|++++.++++.+||+++||++|||||+++.++|+.+||+||+||+++
T Consensus 132 i~~~~gl~~svGia~n~~lAklas~~~~k~kp~g~~v~~~~~~~~~L~~lpi~~l~gig~~~~~~L~~~Gi~tigdl~~~ 211 (409)
T PRK03103 132 IMRETGVYARVGIGPNKLLAKMACDNFAKKNPDGLFTLDKEDVPADLWPLPVRKLFGVGSRMEKHLRRMGIRTIGQLANT 211 (409)
T ss_pred HHHHHCceEEEeecCCHHHHHHHhcchhhcCCCcEEEECHHHHHHHHHcCCHhhcCCccHHHHHHHHHcCCCCHHHHhcC
Confidence 99999999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHhhhCcchHHHHHHHhcCCCCCccccccC--CcccEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhccccceE
Q psy7164 2010 SLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQ--RKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKC 2087 (2307)
Q Consensus 2010 p~~~L~~~fG~k~G~~L~~~arGiD~~~V~~~~~--rKSIs~e~nfg~r~~~~eel~~~L~~La~eL~~RLr~~~~~~r~ 2087 (2307)
|+..|.++|| ..|..+|+.++|+|++++.+..+ +|||+.+.+|+.++.+.+++...|.+||.+|+.||++.++.+++
T Consensus 212 ~~~~L~~~fG-~~~~~l~~~a~G~d~~~v~~~~~~~~ksi~~~~t~~~~~~~~~~l~~~l~~L~~~l~~rLr~~~~~~~~ 290 (409)
T PRK03103 212 PLERLKKRWG-INGEVLWRTANGIDYSPVTPHSLDRQKAIGHQMTLPRDYRGFEEIKVVLLELCEEVCRRARAKGYMGRT 290 (409)
T ss_pred CHHHHHHHHC-HHHHHHHHHhcCCCCCcCCcccCCCCCccCCCeECCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCceeE
Confidence 9999999999 68999999999999999988754 68999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCCCcccccccccCceeeeecceec--cCcCChhHHHHHHHHHHhhhcCCCCCceEEeeeecccccc-ccCC
Q psy7164 2088 ITLKLMVRSAEAPREASKFLGHGVCDYITKSSS--LPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITK-SSSL 2164 (2307)
Q Consensus 2088 LTLkL~~R~~~Ap~ep~K~lGhG~cD~~skS~~--Lpt~~~~~L~~aA~~lL~~i~~~~~~yr~~Gv~l~dl~sk-q~~L 2164 (2307)
|+|++++...+. | ...+++.. .|+.+...|..+++.++++++ .+.+++.+|+.+.++.+. ..++
T Consensus 291 l~l~lr~~~~~~----------~--~~~~~~~~l~~pt~~~~~l~~~~~~ll~~~~-~~~~vr~lgv~~~~l~~~~~~q~ 357 (409)
T PRK03103 291 VSVSLRGADFDW----------P--TGFSRQMTLPEPTNLAMEVYEAACKLFHRHW-DGKPVRRVGVTLSNLVSDDVWQL 357 (409)
T ss_pred EEEEEEeCCCcC----------C--CCcceeeecCCCCCCHHHHHHHHHHHHHhcc-cCCCceEEEEEEeCCCCCcccCC
Confidence 999998743321 1 11344444 478888999999999999997 678899999999988763 3566
Q ss_pred ccCcc--hHHHHHHHHHHHHHhcCCCCc
Q psy7164 2165 PMYIS--QASQILKEVLFIVNKLKVDPV 2190 (2307)
Q Consensus 2165 ~l~t~--~~~~I~~e~~~L~r~~g~~~~ 2190 (2307)
++|.+ ....+.+.++.|..++|.+..
T Consensus 358 ~LF~~~~~~~~l~~~ld~l~~r~G~~av 385 (409)
T PRK03103 358 SLFGDRERKRSLGYVMDDIKNRFGPTAI 385 (409)
T ss_pred CcccchhhHHHHHHHHHHHHHhhChhHH
Confidence 77754 445788999999999996544
No 22
>PRK02794 DNA polymerase IV; Provisional
Probab=100.00 E-value=2.8e-59 Score=587.37 Aligned_cols=371 Identities=26% Similarity=0.370 Sum_probs=328.9
Q ss_pred CCEEEEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHHHH
Q psy7164 1613 EPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHA 1692 (2307)
Q Consensus 1613 ~r~I~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~~A 1692 (2307)
.|+|+||||||||||||++.+|+|+++||||+++. .++|++|||+||++||++||++.+|
T Consensus 35 ~~~i~hiD~d~Fyasve~~~~p~l~~~Pv~v~~~~--------------------~~~V~a~ny~Ar~~GV~~GM~~~~A 94 (419)
T PRK02794 35 TLSIAHIDCDAFYASVEKRDNPELRDKPVIIGGGK--------------------RGVVSTACYIARIHGVRSAMPMFKA 94 (419)
T ss_pred CCEEEEEcCCcHHHHHHhhhCccccCCcEEEecCC--------------------CeEEEecCHHHHHhCCCcCCHHHHH
Confidence 57999999999999999999999999999998631 1347899999999999999999999
Q ss_pred HHhCCCcEEecCChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCcccc
Q psy7164 1693 LKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLA 1772 (2307)
Q Consensus 1693 ~kLCPdL~ivpydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~~ 1772 (2307)
+++||+|+++|+|++.|+++|++|++++.+|+|.
T Consensus 95 ~~lcP~l~~v~~d~~~y~~~s~~i~~~l~~~sp~---------------------------------------------- 128 (419)
T PRK02794 95 LKLCPDAVVIKPDMEKYVRVGREVRAMMQALTPL---------------------------------------------- 128 (419)
T ss_pred HHHCCCcEEECCCHHHHHHHHHHHHHHHHHhCcc----------------------------------------------
Confidence 9999999999999999999999999888766543
Q ss_pred hhhhcccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhcccc
Q psy7164 1773 QDIICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLN 1852 (2307)
Q Consensus 1773 ~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~ 1852 (2307)
T Consensus 129 -------------------------------------------------------------------------------- 128 (419)
T PRK02794 129 -------------------------------------------------------------------------------- 128 (419)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchhccCCCHHHHHHHHHHH
Q psy7164 1853 PIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRET 1932 (2307)
Q Consensus 1853 ~~~~~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~~~~~~~~~lA~~IR~~ 1932 (2307)
|+.+|+||+|+|++++.++++..+..++++||+.
T Consensus 129 ----------------------------------------------ve~~siDe~~ldvt~~~~l~g~~~~~~~~~i~~~ 162 (419)
T PRK02794 129 ----------------------------------------------VEPLSIDEAFLDLSGTERLHGAPPAVVLARFARR 162 (419)
T ss_pred ----------------------------------------------eeeccCCeEEEeccchhhhcCCCHHHHHHHHHHH
Confidence 4456678888888888777776666688999999
Q ss_pred HHHHhCCeEEEEecCCHHHHHHHhhccCCCCEEEeChhhHHHHhhcCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHH
Q psy7164 1933 IAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLK 2012 (2307)
Q Consensus 1933 I~~~TG~tvSVGIA~NklLAKLASr~AKPnGq~~L~pe~v~~fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~ 2012 (2307)
|++++|++||||||+|+++||||++.+||+|++++.++++.+||+++||++|||||+++.++|+.+||+||+||+++|+.
T Consensus 163 i~~~~gl~~svGIa~n~~lAKlas~~~KP~g~~ii~~~~~~~~L~~lPl~~L~GiG~~~~~~L~~~GI~tigdL~~l~~~ 242 (419)
T PRK02794 163 VEREIGITVSVGLSYNKFLAKIASDLDKPRGFSVIGRAEALAFLAPKPVGIIWGVGPATAARLARDGIRTIGDLQRADEA 242 (419)
T ss_pred HHHHHCCceEEEEcCCHHHHHHHHhhhCCCCeEecCHHHHHHHHhcCChhhhCCCCHHHHHHHHHhccchHHHHhhCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCcchHHHHHHHhcCCCCCccccccCCcccEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhccccceEEEEEE
Q psy7164 2013 RLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKL 2092 (2307)
Q Consensus 2013 ~L~~~fG~k~G~~L~~~arGiD~~~V~~~~~rKSIs~e~nfg~r~~~~eel~~~L~~La~eL~~RLr~~~~~~r~LTLkL 2092 (2307)
.|.++|| ..|..+|+.++|+|++++.+..++|||+.+.+|+.++.+.+++..+|.+|+.+|+.||+++++.+++|+|+|
T Consensus 243 ~L~~rfG-~~g~~l~~~a~G~d~~~v~~~~~~ksi~~~~tl~~~~~~~~~l~~~l~~L~~~l~~rL~~~~~~~~~l~l~l 321 (419)
T PRK02794 243 DLMRRFG-SMGLRLWRLARGIDDRKVSPDREAKSVSAETTFETDLSDFEDLEPILWRLSEKVSRRLKAAGLAGRTVTLKL 321 (419)
T ss_pred HHHHHHh-HHHHHHHHHhCCCCCCCCccCCCCceeeeeEECCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEEE
Confidence 9999999 589999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCcccccccccCceeeeecceeccCcCChhHHHHHHHHHHhhhcCCCCCceEEeeeeccccccc--cCCccCcc-
Q psy7164 2093 MVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKS--SSLPMYIS- 2169 (2307)
Q Consensus 2093 ~~R~~~Ap~ep~K~lGhG~cD~~skS~~Lpt~~~~~L~~aA~~lL~~i~~~~~~yr~~Gv~l~dl~skq--~~L~l~t~- 2169 (2307)
++..+. ....+.+...|+.+...|+++++.+++++. .+.+++.+|+.+.++.+.. .+.++|.+
T Consensus 322 ~~~~~~-------------~~~~~~~l~~pt~~~~~l~~~~~~ll~~~~-~~~~vr~igv~~~~l~~~~~~~q~~LF~~~ 387 (419)
T PRK02794 322 KTADFR-------------LRTRRRTLEDPTQLADRIFRTARELLEKET-DGTAFRLIGIGVSDLSPADEADPPDLLDPQ 387 (419)
T ss_pred EECCCC-------------ceEEEEECCCCcCCHHHHHHHHHHHHHhcc-cCCCEEEEEEEEecCCCccccccccccCcc
Confidence 974321 122333444478888999999999999984 4568999999999988744 35667754
Q ss_pred --hHHHHHHHHHHHHHhcCCCCc
Q psy7164 2170 --QASQILKEVLFIVNKLKVDPV 2190 (2307)
Q Consensus 2170 --~~~~I~~e~~~L~r~~g~~~~ 2190 (2307)
....+.+.++.|..+||.+..
T Consensus 388 ~~~~~~l~~~id~l~~r~G~~ai 410 (419)
T PRK02794 388 ATRRAAAERAIDALRAKFGAAAV 410 (419)
T ss_pred hhhHHHHHHHHHHHHHhhCcchh
Confidence 345788999999999997543
No 23
>PRK01216 DNA polymerase IV; Validated
Probab=100.00 E-value=4.4e-59 Score=570.85 Aligned_cols=340 Identities=24% Similarity=0.387 Sum_probs=295.8
Q ss_pred EEEEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHHHHHH
Q psy7164 1615 VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALK 1694 (2307)
Q Consensus 1615 ~I~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~~A~k 1694 (2307)
+|+||||||||||||++.+|+|+++||||++..|..+ .+ +.|++|||+||++||+.||++.+|++
T Consensus 2 ~i~hiD~daFfasve~~~~P~L~~kPv~V~~~~~~~~--~~-------------gvV~aasy~Ar~~GV~sgM~~~~A~~ 66 (351)
T PRK01216 2 IILFVDFDYFFAQVEEVLNPSLKGKPVVVCVYSGRFE--DS-------------GAVATANYEARKLGIKAGMPIVEAKK 66 (351)
T ss_pred EEEEEecchHHHHHHhHhChhhcCCcEEEEecCCCCC--CC-------------eEEEECCHHHHHhCCCCCCcHHHHHH
Confidence 7999999999999999999999999999997432211 11 34678999999999999999999999
Q ss_pred hCCCcEEecCChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCcccchh
Q psy7164 1695 KCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQD 1774 (2307)
Q Consensus 1695 LCPdL~ivpydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~~~~ 1774 (2307)
|||+|+++|+|++.|+++|+++++++.+|+|
T Consensus 67 lcP~li~v~~d~~~y~~~s~~i~~~l~~~tp------------------------------------------------- 97 (351)
T PRK01216 67 ILPNAVYLPMRKEVYQQVSNRIMKLLREYSE------------------------------------------------- 97 (351)
T ss_pred HCCCeEEECCCHHHHHHHHHHHHHHHHHhCC-------------------------------------------------
Confidence 9999999999999999999999988876654
Q ss_pred hhcccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhcccchH
Q psy7164 1775 IICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLNPI 1854 (2307)
Q Consensus 1775 ~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~ 1854 (2307)
T Consensus 98 -------------------------------------------------------------------------------- 97 (351)
T PRK01216 98 -------------------------------------------------------------------------------- 97 (351)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchhccCCCHHHHHHHHHHHHH
Q psy7164 1855 VILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIA 1934 (2307)
Q Consensus 1855 ~~~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~~~~~~~~~lA~~IR~~I~ 1934 (2307)
.|+.+|+||+|+|++++.++++ ++..+|++||++|+
T Consensus 98 -------------------------------------------~ve~~siDE~~LDvt~~~~l~g-~~~~la~~ir~~I~ 133 (351)
T PRK01216 98 -------------------------------------------KIEIASIDEAYLDISDKVKNYQ-DAYNLGLEIKNKIL 133 (351)
T ss_pred -------------------------------------------ceEEccCCeEEEEcccchhccC-CHHHHHHHHHHHHH
Confidence 3445677888888888888776 78899999999999
Q ss_pred HHhCCeEEEEecCCHHHHHHHhhccCCCCEEEeChhhHHHHhhcCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHH
Q psy7164 1935 KETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRL 2014 (2307)
Q Consensus 1935 ~~TG~tvSVGIA~NklLAKLASr~AKPnGq~~L~pe~v~~fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L 2014 (2307)
+++|++||||||+|+++||||++.+||+|++++.++++.+||++|||++|||||+++.++|+++||+||+||+++|++.|
T Consensus 134 ~~~glt~siGia~nk~lAKlas~~~KP~g~~vi~~~~~~~~L~~LPi~~l~giG~~~~~~L~~~Gi~TigdL~~~~~~~L 213 (351)
T PRK01216 134 EKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRFINELDIADIPGIGDITAEKLKKLGVNKLVDTLRIEFDEL 213 (351)
T ss_pred HHHCCcEEEEecCCHHHHHHHHhccCCCCEEEeCHHHHHHHHhcCCcccccCCCHHHHHHHHHcCCCcHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCcchHHHHHHHhcCCCCCccccccCCcccEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhccccceEEEEEEEE
Q psy7164 2015 QNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMV 2094 (2307)
Q Consensus 2015 ~~~fG~k~G~~L~~~arGiD~~~V~~~~~rKSIs~e~nfg~r~~~~eel~~~L~~La~eL~~RLr~~~~~~r~LTLkL~~ 2094 (2307)
.++||...|..||+.++|+|++++.+ .++|||+.+.+|+.++.+.+++...|.+|+.+++.||+. .++++++++++
T Consensus 214 ~~rfG~~~~~~L~~~a~G~d~~pv~~-~~~ksi~~~~tl~~di~~~~~l~~~l~~L~~~~~~rl~~---~~~~~~~~~~~ 289 (351)
T PRK01216 214 KGIIGEAKAKYLFSLARNEYNEPVRA-RVRKSIGRYVTLPRNTRDLEEIKPYLKRAIEEAYYKLDG---IPKAIHVVAIM 289 (351)
T ss_pred HHHHCHHHHHHHHHHhCCCCCCCCCC-CCCCCCcCeEECCCccCCHHHHHHHHHHHHHHHHHHHHh---CCCEEEEEEEc
Confidence 99999767999999999999999988 456999999999999999999999999999999999996 56788888876
Q ss_pred ecCCCcccccccccCceeeeecceeccCcCChhHHHHHHHHHHhhhcCCCCCceEEeeeeccccccccCCccCcchHHHH
Q psy7164 2095 RSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQI 2174 (2307)
Q Consensus 2095 R~~~Ap~ep~K~lGhG~cD~~skS~~Lpt~~~~~L~~aA~~lL~~i~~~~~~yr~~Gv~l~dl~skq~~L~l~t~~~~~I 2174 (2307)
..+ ...+++.+++ .+++ .+.|
T Consensus 290 ~df---------------~~~t~~~tl~-------------------------------------------~~~~-~~~~ 310 (351)
T PRK01216 290 EDL---------------DIVSRGRTFT-------------------------------------------HGIS-KETA 310 (351)
T ss_pred CCC---------------CEEEEEEECC-------------------------------------------CCCC-HHHH
Confidence 222 2344555443 3344 3567
Q ss_pred HHHHHHHHHhcCC-CCccEEEeeeeccCcccc
Q psy7164 2175 LKEVLFIVNKLKV-DPVELRGIGIQVSKLEHQ 2205 (2307)
Q Consensus 2175 ~~e~~~L~r~~g~-~~~~lRgIGIq~skL~~~ 2205 (2307)
.+.+..||+++.. +...+|+|||++++|.+.
T Consensus 311 ~~~a~~Ll~~~~~~~~~~vRllGv~~~~l~~~ 342 (351)
T PRK01216 311 YREAVRLLQKILEEDERKIRRIGVRFSKIIEA 342 (351)
T ss_pred HHHHHHHHHhhhhcCCCCeeEEEEEEeccccc
Confidence 8888888887632 234799999999999763
No 24
>cd00424 PolY Y-family of DNA polymerases. Y-family DNA polymerases are a specialized subset of polymerases that facilitate translesion synthesis (TLS), a process that allows the bypass of a variety of DNA lesions. Unlike replicative polymerases, TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. The active sites of TLS polymerases are large and flexible to allow the accomodation of distorted bases. Most TLS polymerases are members of the Y-family, including Pol eta, Pol kappa/IV, Pol iota, Rev1, and Pol V, which is found exclusively in bacteria. In eukaryotes, the B-family polymerase Pol zeta also functions as a TLS polymerase. Expression of Y-family polymerases is often induced by DNA damage and is believed to be highly regulated. TLS is likely induced by the monoubiquitination of the replication clamp PCNA, which provides a scaffold for TLS polymerases to bind in ord
Probab=100.00 E-value=5e-59 Score=571.43 Aligned_cols=336 Identities=30% Similarity=0.408 Sum_probs=304.4
Q ss_pred EEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHHHHHHhC
Q psy7164 1617 MHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKC 1696 (2307)
Q Consensus 1617 ~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~~A~kLC 1696 (2307)
+||||||||||||++.+|+|+++||||++++++. +.|++|||+||++||++||++.+|+++|
T Consensus 1 ~hiD~d~F~as~e~~~~p~l~~~Pv~V~~~~~~~------------------~~V~a~sy~Ar~~GV~~gm~~~~A~~lc 62 (343)
T cd00424 1 LHIDFDNFFASVEQLARPELKGRPVVVVPFNSDS------------------TCVIACSYEARKYGVKRGMPVREARKMC 62 (343)
T ss_pred CeEecchHHHHHHhhhCccccCCCEEEecCCCCC------------------eEEEEeCHHHHHhCCCCCCcHHHHHHhC
Confidence 6999999999999999999999999999854321 2477999999999999999999999999
Q ss_pred CCcEEecCChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCcccchhhh
Q psy7164 1697 PNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDII 1776 (2307)
Q Consensus 1697 PdL~ivpydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~~~~~~ 1776 (2307)
|+|+++|+|++.|+++|+++++++.+|+|
T Consensus 63 P~l~~~~~~~~~y~~~s~~i~~~l~~~sp--------------------------------------------------- 91 (343)
T cd00424 63 PNLILVPARLDLYRRLSERLLSELEEVAP--------------------------------------------------- 91 (343)
T ss_pred CCeEEECCCcHHHHHHHHHHHHHHHHhCC---------------------------------------------------
Confidence 99999999999999999999988876644
Q ss_pred cccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhcccchHHH
Q psy7164 1777 CADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLNPIVI 1856 (2307)
Q Consensus 1777 ~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~ 1856 (2307)
T Consensus 92 -------------------------------------------------------------------------------- 91 (343)
T cd00424 92 -------------------------------------------------------------------------------- 91 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchhccCCCHHHHHHHHHHHHHHH
Q psy7164 1857 LLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKE 1936 (2307)
Q Consensus 1857 ~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~~~~~~~~~lA~~IR~~I~~~ 1936 (2307)
.|+.+|+||+|+|++++.++++ ++.++|+.||++|+++
T Consensus 92 -----------------------------------------~ve~~siDE~~ldvt~~~~~~~-~~~~la~~i~~~i~~~ 129 (343)
T cd00424 92 -----------------------------------------LVEVASIDELFLDLTGSARLLG-LGSEVALRIKRHIAEQ 129 (343)
T ss_pred -----------------------------------------cEEEccCCEEEEECCCchhccC-CHHHHHHHHHHHHHHH
Confidence 3455677888888888777665 6889999999999999
Q ss_pred hC-CeEEEEecCCHHHHHHHhhccCCCCEEEeChhhHHHHhhcCCCCCCCCCChhHHHHHHhcCCccchhhhcCC-HHHH
Q psy7164 1937 TG-CTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNIS-LKRL 2014 (2307)
Q Consensus 1937 TG-~tvSVGIA~NklLAKLASr~AKPnGq~~L~pe~v~~fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp-~~~L 2014 (2307)
|| |+||||||+|+++||||++.+||+|++++.++++.+||+++||++|||||+++.++|+.+||+|++||+++| ...|
T Consensus 130 ~ggl~~siGia~n~~lAKlAs~~~KP~g~~v~~~~~~~~~L~~lpi~~l~giG~~~~~~L~~~Gi~ti~dl~~~~~~~~l 209 (343)
T cd00424 130 LGGITASIGIASNKLLAKLAAKYAKPDGLTILDPEDLPGFLSKLPLTDLPGIGAVTAKRLEAVGINPIGDLLAASPDALL 209 (343)
T ss_pred hCCceEEEeecccHHHHHHHhccCCCCCEEEEcHHHHHHHHhcCChhhcCCCCHHHHHHHHHcCCCcHHHHhcCCHHHHH
Confidence 98 999999999999999999999999999999999999999999999999999999999999999999999999 8889
Q ss_pred HhhhCcchHHHHHHHhcCCCCCccccccCCcccEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhccccceEEEEEEEE
Q psy7164 2015 QNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMV 2094 (2307)
Q Consensus 2015 ~~~fG~k~G~~L~~~arGiD~~~V~~~~~rKSIs~e~nfg~r~~~~eel~~~L~~La~eL~~RLr~~~~~~r~LTLkL~~ 2094 (2307)
.++|| +.|.++|+.|+|+|++++.+..++|||+.+++|+.++.+.+++..+|.+||.+|+.||+++++.+++|+|++++
T Consensus 210 ~~~fg-~~~~~l~~~a~G~d~~~v~~~~~~ksi~~~~tf~~~~~~~~~l~~~l~~l~~~l~~rL~~~~~~~~~l~l~lr~ 288 (343)
T cd00424 210 ALWGG-VSGERLWYALRGIDDEPLSPPRPRKSFSHERVLPRDSRNAEDARPLLRLLLEKLARRLRRDGRGATRLRLWLRT 288 (343)
T ss_pred HHHhh-HHHHHHHHHhCCcCCCCCCCCCCCCceeeeEECCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCceeEEEEEEEe
Confidence 99999 79999999999999999998889999999999999999999999999999999999999999999999999987
Q ss_pred ecCCCcccccccccCceeeeecceecc--CcCChhHHHHHHHHHHhhhcC--CCCCceEEeeee
Q psy7164 2095 RSAEAPREASKFLGHGVCDYITKSSSL--PIYERPLIITYFLLLVRSAEA--PREASKFLGHGV 2154 (2307)
Q Consensus 2095 R~~~Ap~ep~K~lGhG~cD~~skS~~L--pt~~~~~L~~aA~~lL~~i~~--~~~~yr~~Gv~l 2154 (2307)
.... . ++.++..+++.++ |+ +...|..++..++++++. ++..+|.+||.+
T Consensus 289 ~~~~--~-------~~~~~~~~~~~~l~~~t-~~~~l~~~~~~l~~~~~~~~~~~~ir~~gv~~ 342 (343)
T cd00424 289 VDGR--W-------SGHADIPSRSAPRPIST-EDGELLHALDKLWRALLDDKGPRRLRRLGVRL 342 (343)
T ss_pred CCCc--c-------cccceeeeeeeeCCCCC-CHHHHHHHHHHHHHhhhhccCCCCeeEEEEEe
Confidence 4321 1 3457788888888 55 678899999999999986 567899999875
No 25
>PRK14133 DNA polymerase IV; Provisional
Probab=100.00 E-value=1.5e-58 Score=568.02 Aligned_cols=338 Identities=29% Similarity=0.477 Sum_probs=303.8
Q ss_pred CCEEEEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHHHH
Q psy7164 1613 EPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHA 1692 (2307)
Q Consensus 1613 ~r~I~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~~A 1692 (2307)
.|+|+||||||||||||+..+|+|+++||||++..+. +.|++|||+||++||++||++.+|
T Consensus 2 ~r~i~hiD~d~F~as~e~~~~p~l~~~Pvvv~~~~~~-------------------~~V~a~n~~Ar~~GV~~Gm~~~~A 62 (347)
T PRK14133 2 DRVIIHVDMDAFFASVEQMDNPKLKGKPVIVGGISER-------------------GVVSTCSYEARKYGVHSAMPVFMA 62 (347)
T ss_pred CCEEEEEecChHHHHHHhhhCccccCCCEEEecCCCC-------------------cEEEECCHHHHhcCCCCCChHHHH
Confidence 3899999999999999999999999999999863211 247799999999999999999999
Q ss_pred HHhCCCcEEecCChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCcccc
Q psy7164 1693 LKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLA 1772 (2307)
Q Consensus 1693 ~kLCPdL~ivpydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~~ 1772 (2307)
+++||+|+++|+|++.|+++|+++++++.+|++.
T Consensus 63 ~~lcP~l~~~~~d~~~y~~~s~~i~~~l~~~s~~---------------------------------------------- 96 (347)
T PRK14133 63 KKRCPHGIFLPVRHERYKEVSKNIFKILYEVTPI---------------------------------------------- 96 (347)
T ss_pred HHHCCCcEEECCCHHHHHHHHHHHHHHHHHhCCc----------------------------------------------
Confidence 9999999999999999999999999888766443
Q ss_pred hhhhcccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhcccc
Q psy7164 1773 QDIICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLN 1852 (2307)
Q Consensus 1773 ~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~ 1852 (2307)
T Consensus 97 -------------------------------------------------------------------------------- 96 (347)
T PRK14133 97 -------------------------------------------------------------------------------- 96 (347)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchhccCCCHHHHHHHHHHH
Q psy7164 1853 PIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRET 1932 (2307)
Q Consensus 1853 ~~~~~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~~~~~~~~~lA~~IR~~ 1932 (2307)
|+.+|+||+|+|++++. .++..+|++||++
T Consensus 97 ----------------------------------------------ve~~siDe~~ldv~~~~----~~~~~la~~i~~~ 126 (347)
T PRK14133 97 ----------------------------------------------VEPVSIDEAYLDITNIK----EEPIKIAKYIKKK 126 (347)
T ss_pred ----------------------------------------------eEEccCCeEEEEccCCC----CCHHHHHHHHHHH
Confidence 44566777777877765 2678999999999
Q ss_pred HHHHhCCeEEEEecCCHHHHHHHhhccCCCCEEEeChhhHHHHhhcCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHH
Q psy7164 1933 IAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLK 2012 (2307)
Q Consensus 1933 I~~~TG~tvSVGIA~NklLAKLASr~AKPnGq~~L~pe~v~~fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~ 2012 (2307)
|++++||+||||||+|+++||||++.+||+|++++.++++.+||+++||++|||||+++.++|+++||+||+||+++|+.
T Consensus 127 i~~~~gl~~siGia~n~~~Aklas~~~kp~g~~~~~~~~~~~~L~~lpv~~l~gig~~~~~~L~~~Gi~ti~dl~~l~~~ 206 (347)
T PRK14133 127 VKKETGLTLSVGISYNKFLAKLASDWNKPDGIKIITEDMIPDILKPLPISKVHGIGKKSVEKLNNIGIYTIEDLLKLSRE 206 (347)
T ss_pred HHHHHCCcEEEEEcCcHHHHHHHhccCCCCceEEECHHHHHHHHHhCCccccCCCCHHHHHHHHHcCCccHHHHhhCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCcchHHHHHHHhcCCCCCccccccCCcccEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhccccceEEEEEE
Q psy7164 2013 RLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKL 2092 (2307)
Q Consensus 2013 ~L~~~fG~k~G~~L~~~arGiD~~~V~~~~~rKSIs~e~nfg~r~~~~eel~~~L~~La~eL~~RLr~~~~~~r~LTLkL 2092 (2307)
.|.++|| +.|.++|+.++|+|+.++.+..++|||+.+.+|+.++.+.+++.++|.+|+.+|+.||+++++.+++++|+|
T Consensus 207 ~L~~rfG-~~g~~l~~~a~G~d~~~v~~~~~~ksi~~~~~~~~~~~~~~~l~~~l~~L~~~l~~rL~~~~~~~~~l~l~l 285 (347)
T PRK14133 207 FLIEYFG-KFGVEIYERIRGIDYREVEVSRERKSIGKETTLKKDTKDKEELKKYLKDFSNIISEELKKRNLYGKTVTVKI 285 (347)
T ss_pred HHHHHHh-HHHHHHHHHhCCCCCCCCCCCCCCcceEeeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEEE
Confidence 9999999 699999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCcccccccccCceeeeecceeccCcCChhHHHHHHHHHHhhhcCCCCCceEEeeeecccccc
Q psy7164 2093 MVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITK 2160 (2307)
Q Consensus 2093 ~~R~~~Ap~ep~K~lGhG~cD~~skS~~Lpt~~~~~L~~aA~~lL~~i~~~~~~yr~~Gv~l~dl~sk 2160 (2307)
+++... ....+++...|+++...|.++++.+|++++.. .+++.+|+.+.++.+.
T Consensus 286 ~~~~~~-------------~~~~~~~l~~~t~~~~~l~~l~~~lle~~~~~-~~vr~lgl~~~~l~~~ 339 (347)
T PRK14133 286 KTSDFQ-------------THTKSKTLNDYIRDKEEIYNVACEILEHINIK-EPIRLIGLSVSNLSEN 339 (347)
T ss_pred EECCCC-------------eeEEEEECCCCcCCHHHHHHHHHHHHHhccCC-CCEEEEEEEEecCCCC
Confidence 984321 11223334447778899999999999998654 6899999999887653
No 26
>PRK03348 DNA polymerase IV; Provisional
Probab=100.00 E-value=2.4e-58 Score=581.99 Aligned_cols=340 Identities=25% Similarity=0.384 Sum_probs=302.7
Q ss_pred CCEEEEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHHHH
Q psy7164 1613 EPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHA 1692 (2307)
Q Consensus 1613 ~r~I~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~~A 1692 (2307)
.|+|+||||||||||||++.+|+|+++||||++..+ + +.|++|||+||++||++||++.+|
T Consensus 4 ~r~I~hiDmDaFfasvE~~~~P~L~g~PvvV~~~~~------~-------------gvV~aasyeAR~~GVrsgMp~~~A 64 (454)
T PRK03348 4 QRWVLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGG------R-------------GVVAGASYEARVFGARSAMPMHQA 64 (454)
T ss_pred CCEEEEEecChHHHhhhhhhCccccCCcEEEEcCCC------C-------------eEEEeCCHHHHhcCCCCCCcHHHH
Confidence 589999999999999999999999999999985321 1 346789999999999999999999
Q ss_pred HHhCCC-cEEecCChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCccc
Q psy7164 1693 LKKCPN-LKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPL 1771 (2307)
Q Consensus 1693 ~kLCPd-L~ivpydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~ 1771 (2307)
++|||+ |+++++|++.|+++|++|++++.+|++.||.+|+ ||+|+|
T Consensus 65 ~~lcP~~lv~v~~d~~~Y~~~s~~i~~~l~~~sp~VE~~Si--DE~flD------------------------------- 111 (454)
T PRK03348 65 RRLVGNGAVVLPPRFVVYRAASRRVFDTLRELSPVVEQLSF--DEAFVE------------------------------- 111 (454)
T ss_pred HHhCCCCEEEECCChHHHHHHHHHHHHHHHHhCCceEEecC--CeEEEE-------------------------------
Confidence 999999 9999999999999999999999888777776666 666654
Q ss_pred chhhhcccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhccc
Q psy7164 1772 AQDIICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHL 1851 (2307)
Q Consensus 1772 ~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~ 1851 (2307)
T Consensus 112 -------------------------------------------------------------------------------- 111 (454)
T PRK03348 112 -------------------------------------------------------------------------------- 111 (454)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chHHHHHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchhccCCCHHHHHHHHHH
Q psy7164 1852 NPIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRE 1931 (2307)
Q Consensus 1852 ~~~~~~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~~~~~~~~~lA~~IR~ 1931 (2307)
+++.......++..+|++||+
T Consensus 112 -----------------------------------------------------------~~~l~~~~~~~~~~~a~~lr~ 132 (454)
T PRK03348 112 -----------------------------------------------------------PAELAGASAEEVEAFAERLRA 132 (454)
T ss_pred -----------------------------------------------------------ccccccccCCCHHHHHHHHHH
Confidence 222211111145689999999
Q ss_pred HHHHHhCCeEEEEecCCHHHHHHHhhccCCCCEEEeChhhHHHHhhcCCCCCCCCCChhHHHHHHhcCCccchhhhcCCH
Q psy7164 1932 TIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISL 2011 (2307)
Q Consensus 1932 ~I~~~TG~tvSVGIA~NklLAKLASr~AKPnGq~~L~pe~v~~fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~ 2011 (2307)
+|+++|||+||||||+||+|||||++.+||+|++++.++.+.+||++|||++|||||+++.++|+++||+||+||+++|+
T Consensus 133 ~I~~~~Gl~~SvGIa~nk~lAKlAs~~aKP~G~~vi~~~~~~~~L~~LPv~~L~GIG~~t~~~L~~lGI~TigDLa~l~~ 212 (454)
T PRK03348 133 RVREETGLPASVGAGSGKQIAKIASGLAKPDGIRVVPPGEERELLAPLPVRRLWGIGPVTEEKLHRLGIETIGDLAALSE 212 (454)
T ss_pred HHHHHHCCCeEEEEcCCHHHHHHhhccCCCCcEEEEEchHHHHHHHhCCccccCCCCHHHHHHHHHcCCccHHHHhcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCcchHHHHHHHhcCCCCCccccccCCcccEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhccccceEEEEE
Q psy7164 2012 KRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLK 2091 (2307)
Q Consensus 2012 ~~L~~~fG~k~G~~L~~~arGiD~~~V~~~~~rKSIs~e~nfg~r~~~~eel~~~L~~La~eL~~RLr~~~~~~r~LTLk 2091 (2307)
..|.++||...|.+||+.|+|+|++++.+..++|||+.+.+|+.++.+.+++..+|++|+.+|+.||+++++.+++|+|+
T Consensus 213 ~~L~~~fG~~~g~~L~~~a~G~d~~pv~~~~~~ksis~e~tf~~~i~~~~~l~~~L~~L~~~l~~rL~~~g~~~r~v~l~ 292 (454)
T PRK03348 213 AEVANLLGATVGPALHRLARGIDDRPVAERAEAKQISAESTFAVDLTTRAQLREAIERIAEHAHRRLLKDGRGARTVTVK 292 (454)
T ss_pred HHHHHHHCHHHHHHHHHHHcCCCCCCcccCCCCceEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEE
Confidence 99999999779999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCcccccccccCceeeeecceecc--CcCChhHHHHHHHHHHhhhcCCCCCceEEeeeeccccc
Q psy7164 2092 LMVRSAEAPREASKFLGHGVCDYITKSSSL--PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYIT 2159 (2307)
Q Consensus 2092 L~~R~~~Ap~ep~K~lGhG~cD~~skS~~L--pt~~~~~L~~aA~~lL~~i~~~~~~yr~~Gv~l~dl~s 2159 (2307)
|++... +..+++..+ |+.+...|.++++.+|++++..+ .++.+|+.+.++..
T Consensus 293 l~~~d~---------------~~~srs~~l~~pt~d~~~L~~la~~ll~~~~~~~-~vRllgV~~s~l~~ 346 (454)
T PRK03348 293 LRKSDF---------------STLTRSATLPYATDDAAVLAATARRLLLDPDEIG-PIRLVGVGFSGLSD 346 (454)
T ss_pred EEeCCC---------------CccEEEEECCCCCCCHHHHHHHHHHHHHhhccCC-CeEEEEEEECCCCc
Confidence 987432 123455555 67788999999999999987654 79999999988754
No 27
>PRK03352 DNA polymerase IV; Validated
Probab=100.00 E-value=1.9e-57 Score=558.14 Aligned_cols=339 Identities=25% Similarity=0.355 Sum_probs=300.3
Q ss_pred CCEEEEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHHHH
Q psy7164 1613 EPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHA 1692 (2307)
Q Consensus 1613 ~r~I~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~~A 1692 (2307)
.|+|+||||||||||||++.+|+|+++||||++....+. . .+.|++|||+||++||++||++.+|
T Consensus 4 ~r~i~hiD~d~F~as~e~~~~p~l~~~Pvvv~~~~~~~~--~-------------~~~V~~~sy~Ar~~GV~~gM~~~~A 68 (346)
T PRK03352 4 PRWVLHVDLDQFIAAVELLRRPELAGLPVIVGGNGDPTE--P-------------RKVVTCASYEARAFGVRAGMPLRTA 68 (346)
T ss_pred CcEEEEEccchHHHHHHhhhCccccCCCEEEecCCCCCC--C-------------ceEEEECCHHHHHhCCCcCChHHHH
Confidence 589999999999999999999999999999986321100 0 1357799999999999999999999
Q ss_pred HHhCCCcEEecCChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCcccc
Q psy7164 1693 LKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLA 1772 (2307)
Q Consensus 1693 ~kLCPdL~ivpydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~~ 1772 (2307)
+++||+|+++|+|++.|+++|+++++++.+|++
T Consensus 69 ~~lcP~l~~v~~~~~~y~~~s~~i~~~l~~~s~----------------------------------------------- 101 (346)
T PRK03352 69 ARRCPDAVFLPSDPAAYDAASEEVMATLRDLGV----------------------------------------------- 101 (346)
T ss_pred HHHCCCeEEECCCcHHHHHHHHHHHHHHHHhCC-----------------------------------------------
Confidence 999999999999999999999999887766543
Q ss_pred hhhhcccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhcccc
Q psy7164 1773 QDIICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLN 1852 (2307)
Q Consensus 1773 ~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~ 1852 (2307)
T Consensus 102 -------------------------------------------------------------------------------- 101 (346)
T PRK03352 102 -------------------------------------------------------------------------------- 101 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchhccCCCHHHHHHHHHHH
Q psy7164 1853 PIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRET 1932 (2307)
Q Consensus 1853 ~~~~~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~~~~~~~~~lA~~IR~~ 1932 (2307)
.||.+|+||+|+|+++. ++..+|+.||++
T Consensus 102 ---------------------------------------------~ve~~siDe~~ld~t~~------~~~~la~~ir~~ 130 (346)
T PRK03352 102 ---------------------------------------------PVEVWGWDEAFLGVDTD------DPEALAEEIRAA 130 (346)
T ss_pred ---------------------------------------------ceEEecCccEEEeCCCC------CHHHHHHHHHHH
Confidence 34566778888888874 577899999999
Q ss_pred HHHHhCCeEEEEecCCHHHHHHHhhccCCCCEEEeChhhHHHHhhcCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHH
Q psy7164 1933 IAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLK 2012 (2307)
Q Consensus 1933 I~~~TG~tvSVGIA~NklLAKLASr~AKPnGq~~L~pe~v~~fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~ 2012 (2307)
|++++||+||||||+|+++||||++.+||+|++++.++++.+||+++||++|||||+++.++|+++||+|++||+++|+.
T Consensus 131 i~~~~gl~~siGia~nk~lAklaa~~~Kp~g~~~~~~~~~~~~L~~lpl~~l~gig~~~~~~L~~~Gi~ti~dl~~l~~~ 210 (346)
T PRK03352 131 VLERTGLSCSVGIGDNKLRAKIATGFAKPAGVFRLTDANWMAVMGDRPTDALWGVGPKTAKRLAALGITTVADLAAADPA 210 (346)
T ss_pred HHHHHCCCEEEeecCCHHHHHHHHhhcCCCcEEEECHHHHHHHHhcCCHHHcCCCCHHHHHHHHHcCCccHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCcchHHHHHHHhcCCCCCcccccc-CCcccEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhccccceEEEEE
Q psy7164 2013 RLQNEVGNKNGLTLYKHCRGEDDKELTFEH-QRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLK 2091 (2307)
Q Consensus 2013 ~L~~~fG~k~G~~L~~~arGiD~~~V~~~~-~rKSIs~e~nfg~r~~~~eel~~~L~~La~eL~~RLr~~~~~~r~LTLk 2091 (2307)
.|.++||...|.+||+.++|+|++++.... .+||++.+.+|+.++.+.+++..+|++|+.+|+.||+++++.+++++|+
T Consensus 211 ~L~~~fG~~~~~~l~~~a~G~d~~~~~~~~~~~ksi~~~~tf~~~~~~~~~l~~~l~~L~~~l~~rLr~~~~~~~~l~l~ 290 (346)
T PRK03352 211 ELAATFGPTTGPWLLLLARGGGDTEVSAEPWVPRSRSREVTFPQDLTDRAEVESAVRELARRVLDEVVAEGRPVTRVAVK 290 (346)
T ss_pred HHHHHhChHHHHHHHHHhCCCCCCCCCCCCCCCceEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccceEEEE
Confidence 999999977899999999999999998654 5799999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCcccccccccCceeeeecceeccCcCChhHHHHHHHHHHhhhcCCCCCceEEeeeecccc
Q psy7164 2092 LMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYI 2158 (2307)
Q Consensus 2092 L~~R~~~Ap~ep~K~lGhG~cD~~skS~~Lpt~~~~~L~~aA~~lL~~i~~~~~~yr~~Gv~l~dl~ 2158 (2307)
++++.+. ....+++...|+.+...|.++++.+++++.. +.+.+.+|+.+.++.
T Consensus 291 l~~~~~~-------------~~~~~~~l~~pt~d~~~l~~~~~~ll~~~~~-~~~vr~igl~~~~~~ 343 (346)
T PRK03352 291 VRTATFY-------------TRTKIRKLPEPTTDPDVIEAAALDVLDRFEL-DRPVRLLGVRLELAM 343 (346)
T ss_pred EEeCCCc-------------eeEEEEECCCCcCCHHHHHHHHHHHHHhccC-CCCEEEEEEEEeccC
Confidence 9985431 1223444555888889999999999999844 457899999886653
No 28
>cd01703 PolY_Pol_iota DNA Polymerase iota. Pol iota, also called Rad30B, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Pol iota is thought to be one of the least efficient polymerases, particularly when opposite pyrimidines; it can incorporate the correct nucleotide opposite a purine much more efficiently than opposite a pyrimidine, and prefers to insert guanosine instead of adenosine opposite thymidine. Pol iota is believed to use Hoogsteen rather than Watson-Crick base pairing, which may explain the varying efficiency for different template nucleotides.
Probab=100.00 E-value=1e-57 Score=563.49 Aligned_cols=346 Identities=25% Similarity=0.373 Sum_probs=293.1
Q ss_pred EEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHHHHHHhC
Q psy7164 1617 MHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKC 1696 (2307)
Q Consensus 1617 ~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~~A~kLC 1696 (2307)
+||||||||||||++.+|+|+++||||++. +.|++|||+||++||++||++.+|+++|
T Consensus 1 ~HiD~DaFyasve~~~~P~L~~kPv~V~~~----------------------~~V~aasy~AR~~GV~~gm~~~~A~~lc 58 (379)
T cd01703 1 IHLDLDCFYAQVEEIRDPSLKSKPLGIQQK----------------------YIVVTCNYEARRLGVKKLMSIKDAKEIC 58 (379)
T ss_pred CeeecccHHHHHHhhhccccCCCcEEECCC----------------------CEEEEcCHHHHHhCCCCCCcHHHHHHhC
Confidence 699999999999999999999999999751 3477999999999999999999999999
Q ss_pred CCcEEec-CChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCcccchhh
Q psy7164 1697 PNLKIVP-YDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDI 1775 (2307)
Q Consensus 1697 PdL~ivp-ydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~~~~~ 1775 (2307)
|+|++++ +||+.|+++|++|++++.+|+|.
T Consensus 59 P~li~v~~~~~~~Y~~~S~~i~~~l~~~sp~------------------------------------------------- 89 (379)
T cd01703 59 PDLVLVNGEDLTPFRDMSKKVYRLLRSYSWN------------------------------------------------- 89 (379)
T ss_pred CCeEEEcCCChHHHHHHHHHHHHHHHHcCCH-------------------------------------------------
Confidence 9999999 59999999999999988877540
Q ss_pred hcccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhcccchHH
Q psy7164 1776 ICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLNPIV 1855 (2307)
Q Consensus 1776 ~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~ 1855 (2307)
T Consensus 90 -------------------------------------------------------------------------------- 89 (379)
T cd01703 90 -------------------------------------------------------------------------------- 89 (379)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchhccCCCHHHHHHHHHHHHHH
Q psy7164 1856 ILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935 (2307)
Q Consensus 1856 ~~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~~~~~~~~~lA~~IR~~I~~ 1935 (2307)
..||.+|+||+|+|+++...++ +.++|++||++|++
T Consensus 90 -----------------------------------------~~ve~~SiDE~~lDvt~~~~~~---g~~la~~ir~~I~~ 125 (379)
T cd01703 90 -----------------------------------------DRVERLGFDENFMDVTEMRLLV---ASHIAYEMRERIEN 125 (379)
T ss_pred -----------------------------------------hhEEecCCCcEEEEccCccchh---HHHHHHHHHHHHHH
Confidence 0245567777788887765443 36899999999999
Q ss_pred HhCCeEEEEecCCHHHHHHHhhccCCCCEEEeCh---hhHHHHhhcCCCCCCCCCChhHHHHHHhcCCccchhhhcCC--
Q psy7164 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTP---QIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNIS-- 2010 (2307)
Q Consensus 1936 ~TG~tvSVGIA~NklLAKLASr~AKPnGq~~L~p---e~v~~fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp-- 2010 (2307)
+|||+||||||+|++|||||+..+||+|++++.+ +++.+||+++||++|||||+++.++|+.+||.||+||++++
T Consensus 126 ~~Glt~siGIa~nk~lAKlas~~~KP~g~~~i~~~~~~~~~~fl~~lpv~~l~GiG~~~~~kL~~~GI~tigdl~~~~~~ 205 (379)
T cd01703 126 ELGLTCCAGIASNKLLAKLVGSVNKPNQQTTLLPPSCADLMDFMDLHDLRKIPGIGYKTAAKLEAHGISSVRDLQEFSNR 205 (379)
T ss_pred HhCCeEEEEEcCCHHHHHHHhhhcCCCCeEEEcCCchHHHHHHhccCCccccCCcCHHHHHHHHHcCCCcHHHHHhCCcc
Confidence 9999999999999999999999999999999977 56788999999999999999999999999999999999999
Q ss_pred -------------HHHHHhhhCcchHHHHHHHhcCCCCCcc-ccccCCcccEEEEecCc-CCCCHHHHHHHHHHHHHHHH
Q psy7164 2011 -------------LKRLQNEVGNKNGLTLYKHCRGEDDKEL-TFEHQRKSVSAEVNYGI-RFQNNQEMETFLKQLAGEVE 2075 (2307)
Q Consensus 2011 -------------~~~L~~~fG~k~G~~L~~~arGiD~~~V-~~~~~rKSIs~e~nfg~-r~~~~eel~~~L~~La~eL~ 2075 (2307)
...|+++||...|.+||+.|+|+|+++| .+...+|||+.+.+|+. ++.+..++..+|..|+.+|+
T Consensus 206 ~~~~~~~~~~~~s~~~L~~~fG~~~g~~l~~~a~G~d~~~V~~~~~~~ksis~e~tf~~~~~~~~~~~~~~l~~l~~~l~ 285 (379)
T cd01703 206 NRQTVGAAPSLLELLLMVKEFGEGIGQRIWKLLFGRDTSPVKPASDFPQQISIEDSYKKCSLEEIREARNKIEELLASLL 285 (379)
T ss_pred cccccccccccccHHHHHHHHCHHHHHHHHHHHCCCCCCccCCCCCCCceeEEeeccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999996679999999999999999 55567899999999987 78899999999999999999
Q ss_pred HHHHh--------ccccceEEEEEEEEecCCCcccccccccCceeeeecceeccCcCChhHHHHHHHHHHhhhcCCCCCc
Q psy7164 2076 KRLEE--------VKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREAS 2147 (2307)
Q Consensus 2076 ~RLr~--------~~~~~r~LTLkL~~R~~~Ap~ep~K~lGhG~cD~~skS~~Lpt~~~~~L~~aA~~lL~~i~~~~~~y 2147 (2307)
.||++ .+..+++|+|++++... .+ +.....+|+.+++.++.+.+.
T Consensus 286 ~rl~~~l~~~~~~~~~~~~tv~l~vr~~~~------~~----~~~~~~sr~~~l~~~~~~~~~----------------- 338 (379)
T cd01703 286 ERMKQDLQEVKAGDGRRPHTLRLTLRRYTS------TK----KHYNRESKQAPIPSHVFQKLT----------------- 338 (379)
T ss_pred HHHHhhhhccchhcCeeeeEEEEEEEECCC------CC----CccceeeeccccCchhhcccc-----------------
Confidence 99999 89999999999998441 11 112455666666543221100
Q ss_pred eEEeeeeccccccccCCccCcchHHHHHHHHHHHHHhcCCC----CccEEEeeeeccC
Q psy7164 2148 KFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVD----PVELRGIGIQVSK 2201 (2307)
Q Consensus 2148 r~~Gv~l~dl~skq~~L~l~t~~~~~I~~e~~~L~r~~g~~----~~~lRgIGIq~sk 2201 (2307)
..-....+.|.+.+..||+++... ...+|++||.+++
T Consensus 339 -----------------~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~~irl~gv~~~~ 379 (379)
T cd01703 339 -----------------GGNEIAARPIEKILMRLFRELVPPKNVKGFNLTLLNVCFTN 379 (379)
T ss_pred -----------------ccchhhHHHHHHHHHHHHHHhcccccCCCCceEEEEEEeeC
Confidence 000124568899999999987531 2379999999864
No 29
>cd03586 PolY_Pol_IV_kappa DNA Polymerase IV/Kappa. Pol IV, also known as Pol kappa, DinB, and Dpo4, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Known primarily as Pol IV in prokaryotes and Pol kappa in eukaryotes, this polymerase has a propensity for generating frameshift mutations. The eukaryotic Pol kappa differs from Pol IV and Dpo4 by an N-terminal extension of ~75 residues known as the "N-clasp" region. The structure of Pol kappa shows DNA that is almost totally encircled by Pol kappa, with the N-clasp region augmenting the interactions between DNA and the polymerase. Pol kappa is more resistant than Pol eta and Pol iota to bulky guanine adducts and is efficient at catalyzing the incorporation of dCTP. Bacterial pol IV has a
Probab=100.00 E-value=2.5e-57 Score=554.02 Aligned_cols=333 Identities=31% Similarity=0.516 Sum_probs=302.8
Q ss_pred EEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHHHHHHhC
Q psy7164 1617 MHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKC 1696 (2307)
Q Consensus 1617 ~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~~A~kLC 1696 (2307)
+||||||||||||++.+|+|+++||||+++++ .++|++|||+||++||++||++.+|+++|
T Consensus 1 ~hiD~d~Ffas~e~~~~p~l~~~Pv~V~~~~~-------------------~~~v~a~n~~Ar~~GV~~Gm~~~~A~~lc 61 (334)
T cd03586 1 IHIDMDAFYASVEQRDNPELKGKPVAVGGSSD-------------------RGVVSTASYEARKFGVRSAMPIFQAKKLC 61 (334)
T ss_pred CeeccchHHHHHHhhhCccccCCCEEEEeCCC-------------------CeEEEEcCHHHHhcCCCcCCcHHHHHHHC
Confidence 69999999999999999999999999998532 13578999999999999999999999999
Q ss_pred CCcEEecCChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCcccchhhh
Q psy7164 1697 PNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDII 1776 (2307)
Q Consensus 1697 PdL~ivpydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~~~~~~ 1776 (2307)
|+|+++++|++.|+++|++|++++.+|++
T Consensus 62 p~l~~~~~~~~~y~~~s~~i~~~l~~~~~--------------------------------------------------- 90 (334)
T cd03586 62 PNLIFVPPRFDKYREVSRQIMEILREYTP--------------------------------------------------- 90 (334)
T ss_pred CCeEEECCCcHHHHHHHHHHHHHHHHcCC---------------------------------------------------
Confidence 99999999999999999999988876643
Q ss_pred cccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhcccchHHH
Q psy7164 1777 CADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLNPIVI 1856 (2307)
Q Consensus 1777 ~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~ 1856 (2307)
T Consensus 91 -------------------------------------------------------------------------------- 90 (334)
T cd03586 91 -------------------------------------------------------------------------------- 90 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchhccCCCHHHHHHHHHHHHHHH
Q psy7164 1857 LLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKE 1936 (2307)
Q Consensus 1857 ~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~~~~~~~~~lA~~IR~~I~~~ 1936 (2307)
.|+.+|+||+|+|++++.++++ ++..+|++||++|+++
T Consensus 91 -----------------------------------------~ve~~s~De~~ldv~~~~~~~~-~~~~la~~ir~~i~~~ 128 (334)
T cd03586 91 -----------------------------------------LVEPLSIDEAYLDVTDYVRLFG-SATEIAKEIRARIREE 128 (334)
T ss_pred -----------------------------------------ceEEecccceeEccccccccCC-CHHHHHHHHHHHHHHH
Confidence 3455677888888888777766 7889999999999999
Q ss_pred hCCeEEEEecCCHHHHHHHhhccCCCCEEEeChhhHHHHhhcCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHh
Q psy7164 1937 TGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQN 2016 (2307)
Q Consensus 1937 TG~tvSVGIA~NklLAKLASr~AKPnGq~~L~pe~v~~fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~ 2016 (2307)
+||+||+|||+|+++||||++.+||+|++++.++++.+||+++||++|||||+++.++|..+||+||+||+++|...|.+
T Consensus 129 ~g~~~siGia~n~~lAklaa~~~kp~g~~i~~~~~~~~~L~~lpl~~l~gig~~~~~~L~~~Gi~ti~dl~~~~~~~L~~ 208 (334)
T cd03586 129 TGLTASAGIAPNKFLAKIASDLNKPNGLTVIPPEDVEEFLAPLPVRKIPGVGKVTAEKLKELGIKTIGDLAKLDVELLKK 208 (334)
T ss_pred HCCceEEEEhhcHHHHHHHhcCCCCCcEEEECHHHHHHHHhcCCchhhCCcCHHHHHHHHHcCCcCHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCcchHHHHHHHhcCCCCCccccccCCcccEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhccccceEEEEEEEEec
Q psy7164 2017 EVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRS 2096 (2307)
Q Consensus 2017 ~fG~k~G~~L~~~arGiD~~~V~~~~~rKSIs~e~nfg~r~~~~eel~~~L~~La~eL~~RLr~~~~~~r~LTLkL~~R~ 2096 (2307)
+|| ..|.++|+.++|+|++++.+..++|||+++.+|+.++.+.+++.++|..|+.+|+.||+++++.+++++|+++++.
T Consensus 209 ~~g-~~~~~l~~~~~G~~~~~v~~~~~~ks~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~rL~~~~~~~~~l~l~l~~~~ 287 (334)
T cd03586 209 LFG-KSGRRLYELARGIDNRPVEPDRERKSIGVERTFSEDLTDPEELLEELLELAEELAERLRKRGLKGRTVTVKLKYAD 287 (334)
T ss_pred HHh-HHHHHHHHHhCCCCCCCCCCCCCCCeeeeeEECCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECC
Confidence 999 7999999999999999999888999999999999999999999999999999999999999999999999999853
Q ss_pred CCCcccccccccCceeeeecceeccCcCChhHHHHHHHHHHhhhcCCCCCceEEeeeecc
Q psy7164 2097 AEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCD 2156 (2307)
Q Consensus 2097 ~~Ap~ep~K~lGhG~cD~~skS~~Lpt~~~~~L~~aA~~lL~~i~~~~~~yr~~Gv~l~d 2156 (2307)
.. ....+.+...|+++...|.++++.++++++.+ ..++.+||.+.+
T Consensus 288 ~~-------------~~~~~~~l~~~t~~~~~l~~~~~~~l~~~~~~-~~vr~igv~~~~ 333 (334)
T cd03586 288 FS-------------TRTRSRTLPEPTDDAEDIYELALELLEELLDG-RPIRLLGVRLSG 333 (334)
T ss_pred CC-------------eEEEEEECCCCCCCHHHHHHHHHHHHHhccCC-CCEEEEEEEeec
Confidence 21 22233334447889999999999999999877 789999998754
No 30
>cd01702 PolY_Pol_eta DNA Polymerase eta. Pol eta, also called Rad30A, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Unlike other Y-family members, Pol eta can efficiently and accurately replicate DNA past UV-induced lesions. Its activity is initiated by two simultaneous interactions: the PIP box in pol eta interacting with PCNA, and the UBZ (ubiquitin-binding zinc finger) in pol eta interacting with monoubiquitin attached to PCNA. Pol eta is more efficient in copying damaged DNA than undamaged DNA and seems to recognize when a lesion has been passed, facilitating a lesion-dependent dissociation from the DNA.
Probab=100.00 E-value=2e-57 Score=558.20 Aligned_cols=343 Identities=27% Similarity=0.409 Sum_probs=292.0
Q ss_pred EEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHHHHHHhC
Q psy7164 1617 MHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKC 1696 (2307)
Q Consensus 1617 ~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~~A~kLC 1696 (2307)
+||||||||||||++.+|+|+++||||++++ .|++|||+||++||++||++.+|+++|
T Consensus 1 ~hiD~D~FfasvE~~~~p~l~~~PvvV~~~~----------------------~V~a~syeAR~~GV~~gm~~~~A~~lc 58 (359)
T cd01702 1 AHIDMDAFFAQVEQVRLGLLRNDPVAVVQWN----------------------SIIAVSYAARAFGVTRFMTIDEAKKKC 58 (359)
T ss_pred CccccchHHHHHHhHhcccccCCcEEEecCC----------------------cEEEECHHHHhcCCCCCCcHHHHHHHC
Confidence 5999999999999999999999999999731 267899999999999999999999999
Q ss_pred CCcEEecCChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCcccchhhh
Q psy7164 1697 PNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDII 1776 (2307)
Q Consensus 1697 PdL~ivpydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~~~~~~ 1776 (2307)
|+|++||++.=.- -|.|-|.+|
T Consensus 59 P~l~~v~~~~~~~-------------------------~~~~~~~~~--------------------------------- 80 (359)
T cd01702 59 PDLILAHVATYKK-------------------------GEDEADYHE--------------------------------- 80 (359)
T ss_pred CCcEEECCccccc-------------------------ccccccccc---------------------------------
Confidence 9999999751000 000000000
Q ss_pred cccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhcccchHHH
Q psy7164 1777 CADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLNPIVI 1856 (2307)
Q Consensus 1777 ~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~ 1856 (2307)
| +.|
T Consensus 81 ----------------------------------~------------------~~~------------------------ 84 (359)
T cd01702 81 ----------------------------------N------------------PSP------------------------ 84 (359)
T ss_pred ----------------------------------c------------------ccc------------------------
Confidence 0 000
Q ss_pred HHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchhccCCCHHHHHHHHHHHHHHH
Q psy7164 1857 LLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKE 1936 (2307)
Q Consensus 1857 ~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~~~~~~~~~lA~~IR~~I~~~ 1936 (2307)
..++.++ +.|.++|.+++.++.. ++|.||.+||||+|+|+ +.++|++||++|+++
T Consensus 85 ----------~~~~~~~-~~Y~~~S~~i~~~l~~----~sp~vE~~SiDE~flDv----------~~~la~~ir~~I~~~ 139 (359)
T cd01702 85 ----------ARHKVSL-DPYRRASRKILNILKR----FGDVVEKASIDEAYLDL----------GSRIVEEIRQQVYDE 139 (359)
T ss_pred ----------ccccccH-HHHHHHHHHHHHHHHH----cCCceEECcCCeeHHHH----------HHHHHHHHHHHHHHH
Confidence 0001112 4567777777777765 47888888999999988 347999999999999
Q ss_pred hCCeEEEEecCCHHHHHHHhhccCCCCEEEeChhhHHHHhhcCCCCCCCCCChhHHHHH-HhcCCccchhhhcC--CHHH
Q psy7164 1937 TGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL-NSLGAQTCGDLQNI--SLKR 2013 (2307)
Q Consensus 1937 TG~tvSVGIA~NklLAKLASr~AKPnGq~~L~pe~v~~fL~~LPV~dLpGIG~~~~~kL-~~lGI~TigDL~~l--p~~~ 2013 (2307)
+|+|||||||+|+++||||++.+||+|++++.++++.+||+++||++|||||+++.++| +.+||+|++||+++ +...
T Consensus 140 ~glt~SiGIa~nk~lAKlAs~~~KP~g~~v~~~~~~~~~L~~lpv~~l~GiG~~~~~~ll~~~Gi~ti~dl~~~~~~~~~ 219 (359)
T cd01702 140 LGYTCSAGIAHNKMLAKLASGMNKPNAQTILRNDAVASFLSSLPITSIRGLGGKLGEEIIDLLGLPTEGDVAGFRSSESD 219 (359)
T ss_pred hCccEEeeecCCHHHHHHHhcccCCCCeEEECHHHHHHHhhcCcHHHhCCcCHHHHHHHHHHcCCcCHHHHHhccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999998775 89999999999999 9999
Q ss_pred HHhhhCcchHHHHHHHhcCCCCCccccccCCcccEEEEecCcCCCCH-HHHHHHHHHHHHHHHHHHHhc----cccceEE
Q psy7164 2014 LQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNN-QEMETFLKQLAGEVEKRLEEV----KMKGKCI 2088 (2307)
Q Consensus 2014 L~~~fG~k~G~~L~~~arGiD~~~V~~~~~rKSIs~e~nfg~r~~~~-eel~~~L~~La~eL~~RLr~~----~~~~r~L 2088 (2307)
|.++||.+.|.+||+.|+|+|++++.+..++|||+.+.+|+.++.+. +++..+|..||.+|+.||++. ++.+++|
T Consensus 220 L~~~fG~~~g~~l~~~a~G~d~~~v~~~~~~ksi~~~~tf~~~~~~~~~~l~~~l~~L~~~l~~rL~~~~~~~~~~~~~v 299 (359)
T cd01702 220 LQEHFGEKLGEWLYNLLRGIDHEPVKPRPLPKSMGSSKNFPGKTALSTEDVQHWLLVLASELNSRLEDDRYENNRRPKTL 299 (359)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCceeeeeeecCCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcCceeeEE
Confidence 99999978999999999999999999888899999999999999988 999999999999999999997 9999999
Q ss_pred EEEEEEecCCCcccccccccCceeeeecceeccCcCChhHHHHHHHHHHhhhcCCC------CCceEEeeee
Q psy7164 2089 TLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPR------EASKFLGHGV 2154 (2307)
Q Consensus 2089 TLkL~~R~~~Ap~ep~K~lGhG~cD~~skS~~Lpt~~~~~L~~aA~~lL~~i~~~~------~~yr~~Gv~l 2154 (2307)
+|++++..+ +...+++.++|.++...|.++++.+++.++..+ .+++.+|+.+
T Consensus 300 ~v~lr~~~~--------------~~~~sr~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~rl~g~~~ 357 (359)
T cd01702 300 VLSLRQRGD--------------GVRRSRSCALPRYDAQKIVKDAFKLIKAINEEGLGLAWNYPLTLLSLSF 357 (359)
T ss_pred EEEEEECCC--------------cEEEEEEecCCCCCHHHHHHHHHHHHHHhhhhccccccCCCeEEEEEEe
Confidence 999998431 235678889999899999999999999998643 5678888875
No 31
>cd01700 PolY_Pol_V_umuC umuC subunit of DNA Polymerase V. umuC subunit of Pol V. Pol V is a bacterial translesion synthesis (TLS) polymerase that consists of the heterotrimer of one umuC and two umuD subunits. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Pol V, RecA, single stranded DNA-binding protein, beta sliding clamp, and gamma clamp loading complex are responsible for inducing the SOS response in bacteria to repair UV-induced DNA damage.
Probab=100.00 E-value=5.6e-56 Score=544.78 Aligned_cols=332 Identities=21% Similarity=0.291 Sum_probs=292.3
Q ss_pred EEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHHHHHHhC
Q psy7164 1617 MHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKC 1696 (2307)
Q Consensus 1617 ~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~~A~kLC 1696 (2307)
|||||||||||||++.+|+|+++||||+++.+ +.|++|||+||++||++||++.+|+++|
T Consensus 1 ~hiD~d~Ffasve~~~~p~l~~~Pv~V~~~~~--------------------~~i~~~ny~Ar~~GV~~gm~~~~A~~lc 60 (344)
T cd01700 1 ALVDCNSFYASCERVFRPLLLGRPLVVLSNND--------------------GCVIARSPEAKALGIKMGSPYFKVPDLL 60 (344)
T ss_pred CccccccceeeehhhhCCCcCCCeEEEEECCC--------------------CEEEECCHHHHHhCCCCCCcHHHhHhhc
Confidence 69999999999999999999999999997421 1267899999999999999999999999
Q ss_pred CCc--EEecCChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCcccchh
Q psy7164 1697 PNL--KIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQD 1774 (2307)
Q Consensus 1697 PdL--~ivpydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~~~~ 1774 (2307)
|+| +++++|++.|+++|++|++++.+|++.||
T Consensus 61 P~l~~~~v~~~~~~y~~~s~~i~~~l~~~~~~ve---------------------------------------------- 94 (344)
T cd01700 61 ERHGVAVFSSNYALYGDMSRRIMSILERFSPDVE---------------------------------------------- 94 (344)
T ss_pred cccCeEEEcCchHHHHHHHHHHHHHHHhcCCcce----------------------------------------------
Confidence 999 99999999999999999998887755444
Q ss_pred hhcccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhcccchH
Q psy7164 1775 IICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLNPI 1854 (2307)
Q Consensus 1775 ~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~ 1854 (2307)
T Consensus 95 -------------------------------------------------------------------------------- 94 (344)
T cd01700 95 -------------------------------------------------------------------------------- 94 (344)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchhccCCCHHHHHHHHHHHHH
Q psy7164 1855 VILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIA 1934 (2307)
Q Consensus 1855 ~~~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~~~~~~~~~lA~~IR~~I~ 1934 (2307)
.+|+||+|+|++++.+ ++ ++..+|+.||++|+
T Consensus 95 ----------------------------------------------~~s~De~~ldvt~~~~-~~-~~~~la~~i~~~i~ 126 (344)
T cd01700 95 ----------------------------------------------VYSIDESFLDLTGSLR-FG-DLEELARKIRRRIL 126 (344)
T ss_pred ----------------------------------------------EeecchhhccCcCCCC-CC-CHHHHHHHHHHHHH
Confidence 4456666666666665 44 67899999999999
Q ss_pred HHhCCeEEEEecCCHHHHHHHhhccCCC----CEEEeChhhHH-HHhhcCCCCCCCCCChhHHHHHHhcCCccchhhhcC
Q psy7164 1935 KETGCTCSTGFGSNKLQARLATKKAKPN----GQFHLTPQIIS-DFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNI 2009 (2307)
Q Consensus 1935 ~~TG~tvSVGIA~NklLAKLASr~AKPn----Gq~~L~pe~v~-~fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~l 2009 (2307)
+++|++||+|||+|+++||||++.+||+ |++.+.+++.. +||+++||++|||||+++.++|+++||+|++||+++
T Consensus 127 ~~~gl~~s~Gia~~~~lAklas~~~kp~~~~~g~~~~~~~~~~~~~l~~lpl~~l~gig~~~~~~L~~~Gi~ti~dL~~~ 206 (344)
T cd01700 127 QETGIPVTVGIGPTKTLAKLANDLAKKKNPYGGVVDLTDEEVRDKLLKILPVGDVWGIGRRTAKKLNAMGIHTAGDLAQA 206 (344)
T ss_pred HHhCCceEEEecCCHHHHHHHHHHhcCCCCCCeEEEecChhHHHHHhccCChhhcCccCHHHHHHHHHcCCCcHHHHhcC
Confidence 9999999999999999999999999984 78888766654 999999999999999999999999999999999999
Q ss_pred CHHHHHhhhCcchHHHHHHHhcCCCCCccccccC-CcccEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhccccceEE
Q psy7164 2010 SLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQ-RKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCI 2088 (2307)
Q Consensus 2010 p~~~L~~~fG~k~G~~L~~~arGiD~~~V~~~~~-rKSIs~e~nfg~r~~~~eel~~~L~~La~eL~~RLr~~~~~~r~L 2088 (2307)
|.+.|.++|| ..|.++|+.++|+|++++.+..+ +|||+.+.+|+.++.+.+++.++|++|+.+|+.||+++++.+++|
T Consensus 207 ~~~~L~~rfG-~~~~~l~~~a~G~d~~~v~~~~~~~ks~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~L~~~~~~~~~l 285 (344)
T cd01700 207 DPDLLRKKFG-VVGERLVRELNGIDCLPLEEYPPPKKSIGSSRSFGRDVTDLDELKQALAEYAERAAEKLRRQKSVARTI 285 (344)
T ss_pred CHHHHHHHHH-HHHHHHHHHhCCCCCCcCCCCCCCCcEEEEeeEcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcccEE
Confidence 9999999999 58999999999999999975554 699999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCcccccccccCceeee---ecceeccCcCChhHHHHHHHHHHhhhcCCCCCceEEeeeec
Q psy7164 2089 TLKLMVRSAEAPREASKFLGHGVCDY---ITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVC 2155 (2307)
Q Consensus 2089 TLkL~~R~~~Ap~ep~K~lGhG~cD~---~skS~~Lpt~~~~~L~~aA~~lL~~i~~~~~~yr~~Gv~l~ 2155 (2307)
+|++++..+. .++. .+.+...|+++...|.++++.+++.++..+..+|.+||.+.
T Consensus 286 ~l~l~~~~~~------------~~~~~~~~~~~~~~~t~~~~~l~~~~~~ll~~~~~~~~~iR~iGV~~~ 343 (344)
T cd01700 286 SVFIGTSGFS------------RQPKYYSATNTLPYPTNDTREIVKAALRLLYAIYRPGYAYRKAGVMLS 343 (344)
T ss_pred EEEEEcCCCC------------CCCCccccccccCCcchhHHHHHHHHHHHHHHHhCCCCcEEEEEEEee
Confidence 9999985321 1221 11233457888899999999999999887888999999874
No 32
>PRK02406 DNA polymerase IV; Validated
Probab=100.00 E-value=1.7e-55 Score=540.39 Aligned_cols=331 Identities=32% Similarity=0.515 Sum_probs=295.4
Q ss_pred CCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHHHHHHhCCCcE
Q psy7164 1621 MDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLK 1700 (2307)
Q Consensus 1621 mD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~~A~kLCPdL~ 1700 (2307)
|||||||||++.+|+|+++||||+++.+. .+.|++|||+||++|||+||++.+|+++||+|+
T Consensus 1 ~d~Ffasve~~~~p~l~~~Pv~v~~~~~~------------------~~~v~a~n~~Ar~~GV~~gm~~~~A~~lcP~l~ 62 (343)
T PRK02406 1 MDCFYAAVEMRDNPELRGKPVAVGGSPGR------------------RGVISTCNYEARKFGVRSAMPTAQALKLCPDLI 62 (343)
T ss_pred CCchHHHHHhhhCccccCCCEEEecCCCC------------------CeEEEecCHHHHHhCCCCCCcHHHHHHHCCCeE
Confidence 89999999999999999999999975322 135789999999999999999999999999999
Q ss_pred EecCChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCcccchhhhcccc
Q psy7164 1701 IVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADS 1780 (2307)
Q Consensus 1701 ivpydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~~~~~~~~~~ 1780 (2307)
++++|++.|+++|++|++++.+|++
T Consensus 63 ~~~~d~~~y~~~s~~i~~~l~~~sp------------------------------------------------------- 87 (343)
T PRK02406 63 FVPGRFDVYKEVSRQIREIFRRYTD------------------------------------------------------- 87 (343)
T ss_pred EECCChHHHHHHHHHHHHHHHHhCC-------------------------------------------------------
Confidence 9999999999999999887766543
Q ss_pred cccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhcccchHHHHHHH
Q psy7164 1781 HTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLNPIVILLRF 1860 (2307)
Q Consensus 1781 ~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1860 (2307)
T Consensus 88 -------------------------------------------------------------------------------- 87 (343)
T PRK02406 88 -------------------------------------------------------------------------------- 87 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchhccCCCHHHHHHHHHHHHHHHhCCe
Q psy7164 1861 LRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCT 1940 (2307)
Q Consensus 1861 ~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~~~~~~~~~lA~~IR~~I~~~TG~t 1940 (2307)
.|+.+|+||+|+|++++.++++ ++.++|+.||++|++++||+
T Consensus 88 -------------------------------------~ve~~siDe~~ldvt~~~~~~~-~~~~la~~i~~~i~~~~gl~ 129 (343)
T PRK02406 88 -------------------------------------LIEPLSLDEAYLDVTDNKLCIG-SATLIAQEIRQDIFEELGLT 129 (343)
T ss_pred -------------------------------------ceEEccCCeEEEeccCccccCC-CHHHHHHHHHHHHHHHHCCC
Confidence 3455677888888888888776 78899999999999999999
Q ss_pred EEEEecCCHHHHHHHhhccCCCCEEEeChhhHHHHhhcCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhCc
Q psy7164 1941 CSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGN 2020 (2307)
Q Consensus 1941 vSVGIA~NklLAKLASr~AKPnGq~~L~pe~v~~fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG~ 2020 (2307)
||||||+|+++||||++.+||+|++++.++++.+||+++||++|||||+++.++|+.+||+||+||+++|++.|.++||
T Consensus 130 ~siGia~n~~lAklas~~~Kp~g~~~~~~~~~~~~L~~lpi~~l~giG~~~~~~L~~~Gi~ti~dl~~l~~~~L~~~fG- 208 (343)
T PRK02406 130 ASAGVAPNKFLAKIASDWNKPNGLFVITPEEVDAFLATLPVEKIPGVGKVTAEKLHALGIYTCADLQKYDLAELIRHFG- 208 (343)
T ss_pred eEEEeccCHHHHHHHhcCCCCCCEEEECHHHHHHHHHcCCcchhcCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhcCCCCCccccccCCcccEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhcc--ccceEEEEEEEEecCC
Q psy7164 2021 KNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVK--MKGKCITLKLMVRSAE 2098 (2307)
Q Consensus 2021 k~G~~L~~~arGiD~~~V~~~~~rKSIs~e~nfg~r~~~~eel~~~L~~La~eL~~RLr~~~--~~~r~LTLkL~~R~~~ 2098 (2307)
..|.++|+.++|+|+.++.+..++|||+.+.+|+.++.+.+++..+|++|+.+|+.||++++ +.+++|+|+++++...
T Consensus 209 ~~~~~l~~~a~G~d~~~v~~~~~~ksi~~~~~~~~~~~~~~~l~~~l~~l~~~l~~rL~~~~~~~~~~~l~l~l~~~~~~ 288 (343)
T PRK02406 209 KFGRRLYERARGIDERPVKPDRERKSVGVERTFAEDLYDLEACLAELPRLAEKLERRLERAKPDKRIKTVGVKLKFADFQ 288 (343)
T ss_pred HHHHHHHHHhCCCCCCccccCCCCcceeeeeeCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccceeEEEEEEeCCCC
Confidence 69999999999999999998888999999999999999999999999999999999999999 9999999999984321
Q ss_pred CcccccccccCceeeeecceeccCcCChhHHHHHHHHHHhhhcCCCCCceEEeeeeccccc
Q psy7164 2099 APREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYIT 2159 (2307)
Q Consensus 2099 Ap~ep~K~lGhG~cD~~skS~~Lpt~~~~~L~~aA~~lL~~i~~~~~~yr~~Gv~l~dl~s 2159 (2307)
.-..+.+ .-++++...+..++..+++..+ +.+++.+|+.+.++.+
T Consensus 289 -------------~~~~~~~-~~~~~~~~~l~~~~~~L~~~~~--~~~vr~lgv~~~~l~~ 333 (343)
T PRK02406 289 -------------QTTKEHT-ADPLDKADLIELLAQALLRRLG--GRGVRLLGVGVTLLEP 333 (343)
T ss_pred -------------eEEEecC-CCCCCcHHHHHHHHHHHHhhCc--CCCEEEEEEEEecCCc
Confidence 1122223 3355566777777778877775 6789999999977654
No 33
>KOG2094|consensus
Probab=100.00 E-value=4.1e-56 Score=510.69 Aligned_cols=345 Identities=30% Similarity=0.493 Sum_probs=300.1
Q ss_pred CCCCEEEEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHH
Q psy7164 1611 EPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVG 1690 (2307)
Q Consensus 1611 ~~~r~I~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~ 1690 (2307)
+.+|+|+|||||+|||+||++++|.|+++|+||+.. .++.++||+||+||||.+||.+
T Consensus 100 dLsr~~vhvDmDAfyAaVE~~dnP~lk~~PmAVGs~----------------------smlsTaNY~ARkFGVRaaMPgF 157 (490)
T KOG2094|consen 100 DLSRIIVHVDMDAFYAAVEMLDNPKLKSKPMAVGSK----------------------SMLSTANYVARKFGVRAAMPGF 157 (490)
T ss_pred cccceEEEechHHHHHHHHhccCcccccCCccccch----------------------hhhhhhhHHHHHhhhhhcCchH
Confidence 457999999999999999999999999999999852 2466889999999999999999
Q ss_pred HHHHhCCCcEEecCChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCcc
Q psy7164 1691 HALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEP 1770 (2307)
Q Consensus 1691 ~A~kLCPdL~ivpydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~ 1770 (2307)
.|++|||+|++||.||+.|..+|+++.++|++|++++-++|+ ||||+|| +++++
T Consensus 158 IarklCPdLiiVP~n~~kYt~~Ske~~~v~~~YDsn~~~~Sl--DEaylnl------T~~l~------------------ 211 (490)
T KOG2094|consen 158 IARKLCPDLIIVPLNFSKYTIVSKEIQNVLAQYDSNFCAMSL--DEAYLNL------TSHLR------------------ 211 (490)
T ss_pred HHhccCCceEEeCCCcHHHHHHHHHHHHHHHHcCCccccchH--HHHHHhH------HHHHH------------------
Confidence 999999999999999999999999999999999999999999 9999976 11110
Q ss_pred cchhhhcccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhcc
Q psy7164 1771 LAQDIICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERH 1850 (2307)
Q Consensus 1771 ~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~ 1850 (2307)
++.
T Consensus 212 -----------------------------------------------------------------------------~~~ 214 (490)
T KOG2094|consen 212 -----------------------------------------------------------------------------ERE 214 (490)
T ss_pred -----------------------------------------------------------------------------Hhh
Confidence 000
Q ss_pred cchHHHHHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchhccCCCHHHHHHHHH
Q psy7164 1851 LNPIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLR 1930 (2307)
Q Consensus 1851 ~~~~~~~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~~~~~~~~~lA~~IR 1930 (2307)
+ | |+ . ..+..+++++||
T Consensus 215 ~--------------g-----------------------------------------~l-----~---~nG~~evveeiR 231 (490)
T KOG2094|consen 215 L--------------G-----------------------------------------FL-----V---ENGITEVVEEIR 231 (490)
T ss_pred c--------------c-----------------------------------------hh-----h---hccHHHHHHHHH
Confidence 0 0 00 0 002568899999
Q ss_pred HHHHHHhCCeEEEEecCCHHHHHHHhhccCCCCEEEeChh--hHHHHhhcCCCCCCCCCChhHHHHHHhcCCccchhhhc
Q psy7164 1931 ETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQ--IISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQN 2008 (2307)
Q Consensus 1931 ~~I~~~TG~tvSVGIA~NklLAKLASr~AKPnGq~~L~pe--~v~~fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~ 2008 (2307)
.+|+++||+|||+|||+|++|||+|++++||||||+|.++ .+.+||.+|||+++-|||+.+.+.|.++||.||+|+..
T Consensus 232 ~rV~qeTglT~SaGIAaN~lLAKicSd~nKPNgQf~i~~dr~aim~F~kdLPvRkV~GIGrV~E~qLkal~IkTcgdm~~ 311 (490)
T KOG2094|consen 232 FRVEQETGLTCSAGIAANKLLAKICSDKNKPNGQFVIPNDRIAIMKFMKDLPVRKVSGIGRVTEQQLKALGIKTCGDMQQ 311 (490)
T ss_pred HHHHHhcCceeeccccHhHHHHHHhccccCCCCceEecccHHHHHHHHhcCCcccccchhHHHHHHHHhcCceeHHHHHH
Confidence 9999999999999999999999999999999999999864 58899999999999999999999999999999999985
Q ss_pred CCHHHHHhhhCcchHHHHHHHhcCCCCCccccccCCcccEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhccccceEE
Q psy7164 2009 ISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCI 2088 (2307)
Q Consensus 2009 lp~~~L~~~fG~k~G~~L~~~arGiD~~~V~~~~~rKSIs~e~nfg~r~~~~eel~~~L~~La~eL~~RLr~~~~~~r~L 2088 (2307)
....|--.|.++..+.+.+.+.|...+++.....||||++|++|.. ..+...+...++.||..|++.|++.|+.+++|
T Consensus 312 -k~~ll~~lFsp~S~~~fLr~slG~g~t~~~~~~eRKsis~ErTFs~-~sd~~il~~k~qel~~~lsedlqK~glv~rtv 389 (490)
T KOG2094|consen 312 -KLVLLSLLFSPKSFQNFLRCSLGLGTTILDEDGERKSISSERTFSS-TSDPSILYSKLQELCQMLSEDLQKEGLVGRTV 389 (490)
T ss_pred -hhhHHHHHhCchhHHHHHHHhhcCCCCcCccccccccccceeeecc-cCCHHHHHHHHHHHHHHHHHHHHhcCcccceE
Confidence 4667888899988888889999999999999999999999999995 89999999999999999999999999999999
Q ss_pred EEEEEEecCCCcccccccccCceeeeecceeccCcCChhHHHHHHHHHHhhhcCCCCCceEEeeeeccccccccCCccCc
Q psy7164 2089 TLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYI 2168 (2307)
Q Consensus 2089 TLkL~~R~~~Ap~ep~K~lGhG~cD~~skS~~Lpt~~~~~L~~aA~~lL~~i~~~~~~yr~~Gv~l~dl~skq~~L~l~t 2168 (2307)
|+|++...++ ..+++.+...+.
T Consensus 390 tiKlK~ssFe----------------------------------------------------------v~Tr~~t~s~vv 411 (490)
T KOG2094|consen 390 TIKLKTSSFE----------------------------------------------------------VHTRQKTISQVV 411 (490)
T ss_pred EEEEecccee----------------------------------------------------------eeeccCchhhhh
Confidence 9999984332 123334444456
Q ss_pred chHHHHHHHHHHHHHhcCCCCccEEEeeeeccCcccc
Q psy7164 2169 SQASQILKEVLFIVNKLKVDPVELRGIGIQVSKLEHQ 2205 (2307)
Q Consensus 2169 ~~~~~I~~e~~~L~r~~g~~~~~lRgIGIq~skL~~~ 2205 (2307)
...+.|.+.+..|+++-. +..+|++||.+++|...
T Consensus 412 ~S~edi~k~aleLLk~e~--~~~iRLlGvR~sqlv~e 446 (490)
T KOG2094|consen 412 HSEEDILKPALELLKQEY--PMTIRLLGVRASQLVSE 446 (490)
T ss_pred ccHHHHHHHHHHHHHhhc--CceEeeeeeeHhhccch
Confidence 677889999999998754 68999999999988654
No 34
>KOG2095|consensus
Probab=100.00 E-value=4.6e-52 Score=513.72 Aligned_cols=349 Identities=30% Similarity=0.452 Sum_probs=274.6
Q ss_pred CCCCCEEEEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcH
Q psy7164 1610 SEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFV 1689 (2307)
Q Consensus 1610 ~~~~r~I~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l 1689 (2307)
+...|||+||||||||||||++++|+|+++|+||+|. ..||+|||+||++||+++|++
T Consensus 12 ~s~~RVIahVDMDcFyaQVEq~r~P~lr~~PlaVvQ~----------------------ngIIAVsYeARa~GV~R~M~v 69 (656)
T KOG2095|consen 12 NSSLRVIAHVDMDCFYAQVEQRRNPELRSKPLAVVQY----------------------NGIIAVSYEARAFGVKRLMTV 69 (656)
T ss_pred ccccceEEEecchhhHHHHHhhcCchhccCceEEEEe----------------------eeEEEEehhhhhhCCchhhhH
Confidence 4568999999999999999999999999999999994 348899999999999999999
Q ss_pred HHHHHhCCCcEEec-------CChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhh-hhc
Q psy7164 1690 GHALKKCPNLKIVP-------YDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQ-SVL 1761 (2307)
Q Consensus 1690 ~~A~kLCPdL~ivp-------ydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~-~~~ 1761 (2307)
.+|+++||+|++++ .|...||++|.++.++|..|.+.||++++ ||||+|+ ..-.+|++.+|.... ..+
T Consensus 70 ~EAK~kCPqLvlv~v~~~~~ka~~~~YR~as~ev~~~L~~y~~viek~~~--dea~ld~--tasvder~q~L~s~~~~~~ 145 (656)
T KOG2095|consen 70 DEAKKKCPQLVLVHVPVAREKADLPKYREASEEVKESLEPYRPVIEKASK--DEAFLDL--TASVDERLQDLQSDEFNML 145 (656)
T ss_pred HHHHhhCCceEEeecccccccchhhhhhhhHHHHHHHHhhhHHHHHHHhh--hhhhhhH--HHHHHHHHHHHhhhhhhhh
Confidence 99999999999887 36677999999999999999999999998 9999988 223345554443211 001
Q ss_pred ccccCCCcccchhhhcccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhh
Q psy7164 1762 SREQNTTEPLAQDIICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEY 1841 (2307)
Q Consensus 1762 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~ 1841 (2307)
...++...+.+..+ .++ ..++.+-. ++
T Consensus 146 ----------------------~~~~p~~~~~~~~s-~~~--------------~~~~~~~~---e~------------- 172 (656)
T KOG2095|consen 146 ----------------------LEEPPYGLIYGLPS-ALP--------------NTREATNS---EN------------- 172 (656)
T ss_pred ----------------------hhccchhcccCCcc-ccc--------------hhhhhhhh---cc-------------
Confidence 01111111111111 000 00011000 00
Q ss_pred hhhhhhhcccchHHHHHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchhccCCC
Q psy7164 1842 LSNLVEERHLNPIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLT 1921 (2307)
Q Consensus 1842 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~~~~~~ 1921 (2307)
+.+.| +.| ...++...++..+..-+ -
T Consensus 173 --~~~~e--------------------------e~~-----------------------~~~~~~~d~~~~d~~L~---i 198 (656)
T KOG2095|consen 173 --PLMRE--------------------------EIV-----------------------SLWIENDDFDWDDVRLL---I 198 (656)
T ss_pred --ccchh--------------------------hHh-----------------------hhhhhccccCchhhhhH---H
Confidence 00000 000 00122222222232222 3
Q ss_pred HHHHHHHHHHHHHHHhCCeEEEEecCCHHHHHHHhhccCCCCEEEeChhhHHHHhhcCCCCCCCCCChhHHHHH-HhcCC
Q psy7164 1922 PLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL-NSLGA 2000 (2307)
Q Consensus 1922 ~~~lA~~IR~~I~~~TG~tvSVGIA~NklLAKLASr~AKPnGq~~L~pe~v~~fL~~LPV~dLpGIG~~~~~kL-~~lGI 2000 (2307)
+..+|++||++|+.+||++||+|||+||+|||||+..+|||.|++|+...+.+||..|||.+++++|.++.+.| ..|||
T Consensus 199 Ga~Iv~EiR~~i~~elg~tCSAGIa~NKmLAKLvsg~nKPnqQTil~~~~v~~ll~slpi~k~~~lGGk~G~~lie~LGi 278 (656)
T KOG2095|consen 199 GAQIVKEIRDAIKLELGYTCSAGIAHNKMLAKLVSGRNKPNQQTILPNTYVQDLLDSLPITKIRTLGGKLGEELIEVLGI 278 (656)
T ss_pred HHHHHHHHHHHHHHHhCceeeccccccHHHHHHHhccCCCCcceecchHHHHHHHHhCCCceeeeccchHHHHHHHHhCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999888 67999
Q ss_pred ccchhhhcCCHHHHHhhhCcchHHHHHHHhcCCCCCccccccCCcccEEEEecCc--CCCCHHHHHHHHHHHHHHHHHHH
Q psy7164 2001 QTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI--RFQNNQEMETFLKQLAGEVEKRL 2078 (2307)
Q Consensus 2001 ~TigDL~~lp~~~L~~~fG~k~G~~L~~~arGiD~~~V~~~~~rKSIs~e~nfg~--r~~~~eel~~~L~~La~eL~~RL 2078 (2307)
.+++||+.++...|++.||.++|.+||+.|+|+|.++|.+...+|||+++.+|.. ...+.+++..||.+||+++..||
T Consensus 279 ~~vgdl~~fse~~L~~~fg~~~g~~l~~la~Gid~s~V~pr~~pkSig~~K~Fpg~~~~~~~~~l~~wl~~la~el~~Rl 358 (656)
T KOG2095|consen 279 DSVGDLQQFSETQLQKKFGEKNGTWLRNLARGIDNSPVRPRGLPKSIGSEKNFPGKRSRKSLEELQRWLNQLAEELAERL 358 (656)
T ss_pred chHHHHHhcCHHHHHHhhCcchhHHHHHHhcccCCCccccCCCCcchhhhhcCCCccccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999963 36789999999999999999999
Q ss_pred Hhc----cccceEEEEE
Q psy7164 2079 EEV----KMKGKCITLK 2091 (2307)
Q Consensus 2079 r~~----~~~~r~LTLk 2091 (2307)
... ...+.++.++
T Consensus 359 ~~d~~en~r~as~l~~~ 375 (656)
T KOG2095|consen 359 GKDRNENKRRASTLVVS 375 (656)
T ss_pred HhhhhhhccccceEEee
Confidence 766 4566777776
No 35
>COG0389 DinP Nucleotidyltransferase/DNA polymerase involved in DNA repair [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.4e-50 Score=495.33 Aligned_cols=343 Identities=30% Similarity=0.459 Sum_probs=296.9
Q ss_pred CEEEEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHHHHH
Q psy7164 1614 PVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHAL 1693 (2307)
Q Consensus 1614 r~I~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~~A~ 1693 (2307)
|.|+||||||||||||++.+|+|+++||||+++. .+| .|++|||+||+|||+.||++.+|+
T Consensus 1 ~~i~hvD~Daf~Asve~~~~p~l~~~Pvvv~~~~------~~g-------------vV~~~sy~Ar~~Gv~sam~~~~A~ 61 (354)
T COG0389 1 RKILHVDMDAFYASVEERDNPELKGKPVVVGGGA------PRG-------------VVLAASYEARAFGVRSAMPLFEAL 61 (354)
T ss_pred CeEEEEeccchhhhhhhhcCccccCCCeEEEecC------CCC-------------EEEecCHHHHHhCCcccChHHHHH
Confidence 5899999999999999999999999999999841 122 356889999999999999999999
Q ss_pred HhCCCcEEecCChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCcccch
Q psy7164 1694 KKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQ 1773 (2307)
Q Consensus 1694 kLCPdL~ivpydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~~~ 1773 (2307)
++||+++++|++|+.|+.+|.+++.++.+|++.||++|| ||+|+
T Consensus 62 ~~cp~~~~~~~~~~~y~~~s~~i~~i~~~~~~~ve~lSI--DE~~l---------------------------------- 105 (354)
T COG0389 62 KLCPRAIVAPPNFAAYRLASAEIRAILERYTPLVEPLSI--DEAFL---------------------------------- 105 (354)
T ss_pred HHCCCCEEeCCcHHHHHHHHHHHHHHHHhccccceeeec--cceee----------------------------------
Confidence 999999999999999999999999988888766655555 55555
Q ss_pred hhhcccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhcccch
Q psy7164 1774 DIICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLNP 1853 (2307)
Q Consensus 1774 ~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~ 1853 (2307)
T Consensus 106 -------------------------------------------------------------------------------- 105 (354)
T COG0389 106 -------------------------------------------------------------------------------- 105 (354)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchhccCC-CHHHHHHHHHHH
Q psy7164 1854 IVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSL-TPLQFASYLRET 1932 (2307)
Q Consensus 1854 ~~~~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~~~~~-~~~~lA~~IR~~ 1932 (2307)
|+++..+.++. .+..+|..||..
T Consensus 106 --------------------------------------------------------dvt~~~~~~g~~~~~~~a~~ir~~ 129 (354)
T COG0389 106 --------------------------------------------------------DLTDALRLLGLADAPRIALEIRFG 129 (354)
T ss_pred --------------------------------------------------------ecccccccCCcccHHHHHHHHHHH
Confidence 44443333332 567899999999
Q ss_pred HHHHhCCeEEEEecCCHHHHHHHhhccCCCCEEEeChhhHHHHhhcCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHH
Q psy7164 1933 IAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLK 2012 (2307)
Q Consensus 1933 I~~~TG~tvSVGIA~NklLAKLASr~AKPnGq~~L~pe~v~~fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~ 2012 (2307)
|++++|++||+|||+||++||+|+.++||+|++++.++.+.+||++|||.++||||+.+.++|+.+||.||+||+..+..
T Consensus 130 i~~~~~l~~s~Gi~~nk~laKiAs~~~kp~gi~~~~~~~~~~~l~~Lpv~~~~GvG~~~~~~l~~~Gi~ti~dl~~~~~~ 209 (354)
T COG0389 130 ILLELGLTASVGISDNKFLAKIASDLNKPDGITVIEPEEVPALLWQLPVLEFWGVGKVTAEKLRRLGISTIGDLAETDLD 209 (354)
T ss_pred HHHhhCCEEEEEecCcHHHHHHHhcccCCCCEEEECHHHHHHHHhcCChhhhCCCCHHHHHHHHHcCChhHHHHHhcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCcchHHHHHHHhcCCCCCccccccCC-cccEEEEecCcCCCCHHHHHHHHHH-HHHHHHHHHHhccccceEEEE
Q psy7164 2013 RLQNEVGNKNGLTLYKHCRGEDDKELTFEHQR-KSVSAEVNYGIRFQNNQEMETFLKQ-LAGEVEKRLEEVKMKGKCITL 2090 (2307)
Q Consensus 2013 ~L~~~fG~k~G~~L~~~arGiD~~~V~~~~~r-KSIs~e~nfg~r~~~~eel~~~L~~-La~eL~~RLr~~~~~~r~LTL 2090 (2307)
.|.++|| +.|.+||+.++|+|.++|.....+ ||++.+.+|+.+..+.+++.+.|.. |+++++.||+..+..++++++
T Consensus 210 ~L~~~~g-~~~~~l~~~a~Gid~~~v~~~~~~~ksi~~~~t~~~d~~~~~~~~~~l~~~l~e~~~~rl~~~~~~~r~v~~ 288 (354)
T COG0389 210 ALKKRFG-KLGERLYRLARGIDNRPVREQALRAKSIGAESTFEEDLTDAEELIERLRARLGEEVVSRLRKSGRHGRTVSV 288 (354)
T ss_pred HHHHHHh-HhHHHHHHHhcCCCccccccccccCccccceeeccccccCHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEE
Confidence 9999999 678999999999999999998888 9999999999999999988888888 999999999999999999999
Q ss_pred EEEEecCCCcccccccccCceeeeecceeccCcCChhHHHHHHHHHHhhhcCCCCCceEEeeeeccccccccCCccCcch
Q psy7164 2091 KLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQ 2170 (2307)
Q Consensus 2091 kL~~R~~~Ap~ep~K~lGhG~cD~~skS~~Lpt~~~~~L~~aA~~lL~~i~~~~~~yr~~Gv~l~dl~skq~~L~l~t~~ 2170 (2307)
++++-.+ ...++ +.++..++++
T Consensus 289 ~~~~~df---------------~~~t~-------------------------------------------~~~l~~p~~~ 310 (354)
T COG0389 289 KLKTADF---------------PTNTR-------------------------------------------SRKLAQPTSD 310 (354)
T ss_pred EEEecCC---------------Cccee-------------------------------------------ecccCCcCCC
Confidence 9998322 11222 2333444555
Q ss_pred HHHHHHHHHHHHHhcCC-C-CccEEEeeeeccCccccc
Q psy7164 2171 ASQILKEVLFIVNKLKV-D-PVELRGIGIQVSKLEHQS 2206 (2307)
Q Consensus 2171 ~~~I~~e~~~L~r~~g~-~-~~~lRgIGIq~skL~~~S 2206 (2307)
...|...+..++.++.. . +..+|.+|++++.|....
T Consensus 311 ~~~i~~~~~~l~~~~~~~~~~~~~rl~gv~~~~~~~~~ 348 (354)
T COG0389 311 PIEIYAAALPLLPPLLFRGRGRRIRLLGVSGPELIDSE 348 (354)
T ss_pred HHHHHHHHHHHHHHhhccCCCceEEEEEEEecCccccc
Confidence 67777777778876652 2 578899999999887654
No 36
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=100.00 E-value=2.4e-50 Score=498.60 Aligned_cols=241 Identities=24% Similarity=0.378 Sum_probs=202.4
Q ss_pred CCCCCCccccCCCCeeeecCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCCCCCcccCCCCCcEEEEecCcEEEEEEE
Q psy7164 657 IGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNFKGEIDYCGDSRFVVNGE 736 (2307)
Q Consensus 657 g~~iEP~vlppiiP~LLVNGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~~~l~P~ykGf~G~I~~tg~g~~~vrG~ 736 (2307)
|..+||+||+|+|||||||||+||||||||+||||||.|||+|++++|+++++..+.|||+||+|.|+.+|+|+|++||+
T Consensus 142 ~~~~eP~~y~P~iP~lLvNG~~GIavG~sT~IPphN~~evi~~~~~~l~~~~~~~~~Pdfpg~~G~i~~tg~g~~~~rg~ 221 (439)
T PHA02592 142 PEHIPPAFYLPIIPMVLLNGVSGIATGYATNILPHSPKSVIKAVLAALNGKDITEPKVQFPEFKGEVVEIEPGSYEIRGT 221 (439)
T ss_pred CcccCCcccccCCchhhccCCcceeeeeecCCCCCCHHHHHHHHHHHhcCCCCCCCCCcCCCCCCeEEEcCCceEEEEEE
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCeEEEEecCCccchHHHHHHHHHHhcCCCcCccc----------------------------cCC---------
Q psy7164 737 IAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDEVH----------------------------PGP--------- 779 (2307)
Q Consensus 737 ~~~~~~~~IvITELPy~v~t~~~~e~La~Lv~~~~~~~y~----------------------------~t~--------- 779 (2307)
+++.++++|+||||||++||++|+++|++|++.+++.+|. .+.
T Consensus 222 ~~~~~~~~i~ItElP~~~~~~~~~~~i~~l~~~~~i~~i~ds~~~~v~i~I~lk~~~~~~~~~~~L~k~~~L~~~~~~Nm 301 (439)
T PHA02592 222 YELNGKTKLHITEIPVKYDRETYVAVLDPLEEKGKIVSYDDCTEDGFRFKVTLKREENEEATHEKIMKDFGLIERVSQNI 301 (439)
T ss_pred EEEeCCCEEEEEeCCCcccHHHHHHHHHHHHhcCCcCCcccCCCCceEEEEEECCCCCHHHHHHHHHHhcCchheeeeeE
Confidence 9999999999999999999999999999999888765421 111
Q ss_pred ------CC---CCCHHHHHHHHHHHHHHHHHHHHHh-hhh----------HHHhhcccCCCchHHHHHHHhhcccccccc
Q psy7164 780 ------GR---KSHPRPIAPKSYKIDDDSEEEEIEE-VFH----------DNELAKPQKTGPQLERQERQAAEGEDDEAG 839 (2307)
Q Consensus 780 ------~~---~~sl~eIL~eF~~~Rl~~y~rr~e~-l~n----------i~~li~~~~~d~~~a~~~~~~~~~~~~~~~ 839 (2307)
++ ++++++||++|++||+++|++|.++ |.. ...+|+. +........... ..+..
T Consensus 302 ~~~d~~g~~~~~~~~~~Il~~f~~~R~~~~~kR~~~~l~k~~~r~~~l~~~~~fI~~-----vi~~~~~~~~~~-~~~~~ 375 (439)
T PHA02592 302 TVINENGKLKVYENAEDLIRDFVEIRKTYVQKRIQYEIKETEEAFDLALAKAEFIKR-----VIAGEIVLQGKT-RSELT 375 (439)
T ss_pred EEEecCCeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhccCCC-HHHHH
Confidence 11 3699999999999999999999988 222 2222222 111111100000 11112
Q ss_pred ccCCCCCCChhhHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHccCchhhHHHHHHHHHH
Q psy7164 840 SQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903 (2307)
Q Consensus 840 ~~~~~~~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~el~~ei~~L~~~s~~~lw~~DL~el~k 903 (2307)
.+++.+.+++.||+|||+||||+||++|+++|++|++++++++++|+++++.+||++||++|++
T Consensus 376 ~~l~~~~~~~~q~~~lL~m~L~~LT~~e~~kL~~e~~~l~~ei~~l~~~t~~~~w~~DL~~~~~ 439 (439)
T PHA02592 376 EELSDNKDFGEYADKLVAMNIYSMTSDEREKLQKEAEELEKEHEYWKKTTAKKEYIKDLEELKK 439 (439)
T ss_pred HHHHHcCCCHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 2345677889999999999999999999999999999999999999999999999999999874
No 37
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=100.00 E-value=3.8e-48 Score=481.85 Aligned_cols=239 Identities=26% Similarity=0.368 Sum_probs=196.7
Q ss_pred CCCCCCccccCCCCeeeecCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCC-------CCCcccCCCCCcEEE-----
Q psy7164 657 IGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP-------LPMKPWYKNFKGEID----- 724 (2307)
Q Consensus 657 g~~iEP~vlppiiP~LLVNGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~-------~~l~P~ykGf~G~I~----- 724 (2307)
|+.+||+||||+|||||||||+|||||||||||||||+|||+|++++|+|+++ ..+.|||+||. .|.
T Consensus 122 g~~~EP~~lp~~iP~lLvNGs~GIavG~aT~IPphN~~evi~a~~~~l~~~~~~~~~l~~~~~~Pdfptgg-~I~~~~~~ 200 (445)
T cd00187 122 GQEVEPEVLPPIFPNLLVNGSSGIAVGMATNIPPHNLREVIDALRALIDNPEASIDELMEIIKGPDFPTGG-IIEGRAGI 200 (445)
T ss_pred CCccCCccccccCCeeeeecCcceeeeeccCCCCCCHHHHHHHHHHHhcCCCCCHHHHhcCCCCCCCCCCC-EEecChhH
Confidence 99999999999999999999999999999999999999999999999999998 57889999998 774
Q ss_pred ----EecCcEEEEEEEEEEEcC---CeEEEEecCCccchHHHHHHHHHHhcCCCcCc-----------------------
Q psy7164 725 ----YCGDSRFVVNGEIAILDD---DKLEITELQVGKWTTDYKDTLDTLLHGAEKDE----------------------- 774 (2307)
Q Consensus 725 ----~tg~g~~~vrG~~~~~~~---~~IvITELPy~v~t~~~~e~La~Lv~~~~~~~----------------------- 774 (2307)
.||+|+|++||++++++. ++|+||||||++||++|+++|++|++++++.+
T Consensus 201 ~~~y~tG~g~~~~rg~~~~~~~~~~~~i~ItElP~~~~~~~~~e~i~~l~~~~k~~~I~~~~D~s~~~~vrivI~lk~~~ 280 (445)
T cd00187 201 REAYETGRGRYIIRGKYEIEDDEGRNTIEITELPYQVNKAKLKEKIAELVKDKKIEGISDVRDESDREGIRFVIELKRGA 280 (445)
T ss_pred HHHhhcCCceEEEEEEEEEEccCCCceEEEEeCCCcccHHHHHHHHHHHHhcCCCcccceeeeccCCCceEEEEEECCCc
Confidence 378999999999999875 89999999999999999999999998775321
Q ss_pred ---------cccCCCC-----------------CCCHHHHHHHHHHHHHHHHHHHHHh-hhh-------HHHhhcc-cCC
Q psy7164 775 ---------VHPGPGR-----------------KSHPRPIAPKSYKIDDDSEEEEIEE-VFH-------DNELAKP-QKT 819 (2307)
Q Consensus 775 ---------y~~t~~~-----------------~~sl~eIL~eF~~~Rl~~y~rr~e~-l~n-------i~~li~~-~~~ 819 (2307)
|+.+..+ .+++++||++|++||+++|++|+++ |.+ ++.++.. ..-
T Consensus 281 ~~~~~~~~L~k~t~L~~s~~~Nm~~~~~~g~p~~~~l~~iL~~f~~~R~~~~~rR~~~~l~k~~~rl~il~g~~~~i~~i 360 (445)
T cd00187 281 MAEVVLNGLYKVTKLQTTFGINMVAFDPNGRPKKLNLKEILQEFLDHRLEVYTRRKEYELGKAEARLHILEGLLKAILNI 360 (445)
T ss_pred cHHHHHHHHHHhcCCceeeeeeEEEEecCCeeEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 1112211 2799999999999999999999988 222 2222222 111
Q ss_pred CchHHHHHHHhhccccccccccCCCC---CCChhhHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHccC-----ch
Q psy7164 820 GPQLERQERQAAEGEDDEAGSQTQEE---EDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKA-----PT 891 (2307)
Q Consensus 820 d~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~el~~ei~~L~~~s-----~~ 891 (2307)
+.+....+.+ +++...+++.| .+++.||+|||+||||+||++|++||++|+++++++|++|++++ +.
T Consensus 361 d~vi~~ir~s-----~~ak~~L~~~l~~~~~~~~qa~~IL~m~L~~LT~~e~~kL~~E~~~l~~ei~~l~~~l~~~~~~~ 435 (445)
T cd00187 361 DEVINLIRSS-----DEAKKALIEELEKLGFSEIQADAILDMRLRRLTKLEREKLLKELKELEAEIEDLEKILASEERPK 435 (445)
T ss_pred HHHHHHHhcc-----HHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 1121222111 23333444445 78999999999999999999999999999999999999999998 99
Q ss_pred hhHHHHHHHH
Q psy7164 892 DLWSDDLDAL 901 (2307)
Q Consensus 892 ~lw~~DL~el 901 (2307)
++|++||++|
T Consensus 436 ~~i~~eL~~~ 445 (445)
T cd00187 436 DLWKEELDEF 445 (445)
T ss_pred HHHHHHHHhC
Confidence 9999999875
No 38
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=100.00 E-value=6.7e-47 Score=473.12 Aligned_cols=238 Identities=24% Similarity=0.303 Sum_probs=199.5
Q ss_pred CCCCCCccccCCCCeeeecCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCCCC----CcccCCCCCcEEEEecCcEEE
Q psy7164 657 IGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLP----MKPWYKNFKGEIDYCGDSRFV 732 (2307)
Q Consensus 657 g~~iEP~vlppiiP~LLVNGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~~~----l~P~ykGf~G~I~~tg~g~~~ 732 (2307)
|+.+||+||||+|||||||||+||||||||+||||||.|||+|++++|+|+++.. +.||||||.|.+...+.++|+
T Consensus 142 g~~~EP~~lp~~iP~lLvNGs~GIavG~aT~IpphN~~evi~~~~~~l~~~~~~~~~l~~~~~~pdF~~g~~~~~~~~~~ 221 (445)
T smart00434 142 GQEIEPTVLPPIIPNLLVNGSSGIAVGMATNIPPHNLREVIDAVRRLIDNPEASIDELMMIPWGPDFPTGGEIIGPGSYV 221 (445)
T ss_pred ccccCCccccccCCeeeeecCcceeeeeecCCCCCCHHHHHHHHHHHhCCCCCCHHHHhcCCcCCCCCCeeEEecCCeEE
Confidence 9999999999999999999999999999999999999999999999999999977 889999999999988999999
Q ss_pred EEEEEEEEcC-CeEEEEecCCccchHHHHHHHHHHhcCCCcCc-------c--------------------------ccC
Q psy7164 733 VNGEIAILDD-DKLEITELQVGKWTTDYKDTLDTLLHGAEKDE-------V--------------------------HPG 778 (2307)
Q Consensus 733 vrG~~~~~~~-~~IvITELPy~v~t~~~~e~La~Lv~~~~~~~-------y--------------------------~~t 778 (2307)
+||+++++++ ++|+||||||++||++|+++|+++++++++.+ + +.+
T Consensus 222 ~rg~~~~~~~~~~ivItElP~~~~~~~~~e~I~~lv~~~ki~~i~~~~des~~~~~vrivI~lk~~~~~~~~~~~L~k~t 301 (445)
T smart00434 222 VRGKIEIEDGRNTIVITELPYQVNKAKLIEKIAELVKDKKIEGIIDVRDESHDRTGVRIVIELKRGAMAEVVLNGLYKLT 301 (445)
T ss_pred EEEEEEEEcCCceEEEEeCCCcccHHHHHHHHHHHHhcCCCCcceehhhccCCCCceEEEEEECCCcCHHHHHHHHHHhc
Confidence 9999999765 89999999999999999999999998876432 1 112
Q ss_pred CCC-----------------CCCHHHHHHHHHHHHHHHHHHHHHh-hhh--------HHHhhcc-cCCCchHHHHHHHhh
Q psy7164 779 PGR-----------------KSHPRPIAPKSYKIDDDSEEEEIEE-VFH--------DNELAKP-QKTGPQLERQERQAA 831 (2307)
Q Consensus 779 ~~~-----------------~~sl~eIL~eF~~~Rl~~y~rr~e~-l~n--------i~~li~~-~~~d~~~a~~~~~~~ 831 (2307)
..+ .+++.+||++|++||+++|+||+++ |.+ ++.++.. ...|.+....+.++.
T Consensus 302 ~Lq~s~~~n~~~l~~~g~p~~~~l~~iL~~f~~~R~~~~~rR~~~~l~k~~~~r~~~~~~~fi~~~~~d~ii~~ir~~~~ 381 (445)
T smart00434 302 KLQSTFSINMLALFDNGKPKKYNLKEILKEFLDHRLEVYTRRKEYLLGKLEAERLHILEGLFIALSIIDEIIVLIRSSKD 381 (445)
T ss_pred CCeeeeceeEEEEecCCeeEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHhhccch
Confidence 211 2788999999999999999999998 333 2222222 333333332222111
Q ss_pred ccccccccccCCCCCCChhhHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHccCchhhHH
Q psy7164 832 EGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWS 895 (2307)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~el~~ei~~L~~~s~~~lw~ 895 (2307)
. .+++...++..|.+++.||+|||+||||+||++|++||++|++++++++++|+++++.++|+
T Consensus 382 ~-~~~~~~~l~~~f~~~~~q~~~IL~m~L~~LT~~e~~kL~~e~~~l~~ei~~l~~~l~~~~~~ 444 (445)
T smart00434 382 L-AKEAKELLMERFELSEEQADAILDMRLRRLTKLEVEKLEKELKELEKEIEDLEKILASELWL 444 (445)
T ss_pred h-HHHHHHhCCccCCCCHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhccchhhc
Confidence 1 12444556677889999999999999999999999999999999999999999999999996
No 39
>cd03366 TOPRIM_TopoIIA_GyrB TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit. TopoIIA enzymes cut both strands of the duplex DNA to remove (relax) both positive and negative supercoils in DNA. These enzymes covalently attach to the 5' ends of the cut DNA, separate the free ends of the cleaved strands, pass another region of the duplex through this gap, then rejoin the ends. These proteins also catenate/ decatenate duplex rings. DNA gyrase is more effective at relaxing supercoils than decatentating DNA. DNA gyrase in addition inserts negative supercoils in the presence of ATP. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in strand joining and as a general acid in strand cleava
Probab=100.00 E-value=1.9e-47 Score=389.35 Aligned_cols=112 Identities=38% Similarity=0.626 Sum_probs=108.2
Q ss_pred cEEEEEecCccchhcccCcccccccc--eeeccCCcccchhhccchHHHhhcHHHHHHHHHhccccCCCcCCcCCCCCCC
Q psy7164 472 CTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLR 549 (2307)
Q Consensus 472 ceLfIvEGDSA~~~a~sGsak~gRD~--qaIlPLRGKiLNV~ka~~~ki~~N~EI~~Li~aLGlg~~~~y~~~~d~~~LR 549 (2307)
|||||||||||| |+|++|||+ |||||||||||||+|++.+||++|+||++|++||||+++++ +|+++||
T Consensus 1 ~eL~lvEGDSAg-----gsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~n~Ei~~li~alG~g~~~~----~~~~~lr 71 (114)
T cd03366 1 SELYIVEGDSAG-----GSAKQGRDRRFQAILPLRGKILNVEKARLDKILKNEEIRALITALGTGIGED----FDLEKLR 71 (114)
T ss_pred CEEEEEeCCCCc-----cccccccCcCceEEeccCCccchHhhccHHHHhcChHHHHHHHHhCCCCCCC----CChhhCC
Confidence 899999999998 788999997 99999999999999999999999999999999999999865 5899999
Q ss_pred CCcEEecccCCCCCCchhHHHHHHHHHhhhhhhcCCcEEEecC
Q psy7164 550 YGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFIT 592 (2307)
Q Consensus 550 YgkIiImTDaDvDG~HI~~LLltff~r~~p~Li~~G~vy~~~t 592 (2307)
|||||||||||+||+||++|||||||||||+||++||||+++|
T Consensus 72 Y~kiiimtDaD~DG~hI~~Llltff~~~~p~Li~~G~vyia~p 114 (114)
T cd03366 72 YHKIIIMTDADVDGAHIRTLLLTFFFRYMRPLIENGHVYIAQP 114 (114)
T ss_pred cCeEEEEeCCCCCchHHHHHHHHHHHHHhHHHHhCCeEEEecC
Confidence 9999999999999999999999999999999999999999987
No 40
>cd03468 PolY_like DNA Polymerase Y-family. Y-family DNA polymerases are a specialized subset of polymerases that facilitate translesion synthesis (TLS), a process that allows the bypass of a variety of DNA lesions. Unlike replicative polymerases, TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. The active sites of TLS polymerases are large and flexible to allow the accomodation of distorted bases. Expression of Y-family polymerases is often induced by DNA damage and is believed to be highly regulated. TLS is likely induced by the monoubiquitination of the replication clamp PCNA, which provides a scaffold for TLS polymerases to bind in order to access the lesion. Because of their high error rates, TLS polymerases are potential targets for cancer treatment and prevention.
Probab=100.00 E-value=2.3e-45 Score=448.95 Aligned_cols=327 Identities=17% Similarity=0.195 Sum_probs=281.5
Q ss_pred EEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHHHHHHhC
Q psy7164 1617 MHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKC 1696 (2307)
Q Consensus 1617 ~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~~A~kLC 1696 (2307)
+.|+|++||++|+.+.+|+|+++||||+++.+ . +.|++|||+||++||+.||++.+|+++|
T Consensus 1 l~~~~p~~~l~~~~~~~p~l~~~Pv~V~~~~~-~------------------~~V~~~s~~Ar~~GV~~Gm~~~~A~~lc 61 (335)
T cd03468 1 LALWFPRLPLDALLRNRPADDEAPLAVVERKK-A------------------GRILACNAAARAAGVRPGMPLAEALALC 61 (335)
T ss_pred CeeeCCcCHHHHHhhcCCcccCCCeEEEEeCC-C------------------CEEEecCHHHHHcCCCCCCcHHHHHHhC
Confidence 35899999999999999999999999998532 1 2477999999999999999999999999
Q ss_pred CCcEEecCChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCcccchhhh
Q psy7164 1697 PNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDII 1776 (2307)
Q Consensus 1697 PdL~ivpydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~~~~~~ 1776 (2307)
|+|+++|+|++.|.++|+++++++.+|++.
T Consensus 62 P~l~~~~~~~~~y~~~s~~i~~~l~~~s~~-------------------------------------------------- 91 (335)
T cd03468 62 PNLQVVEYDPEADARALQELALWLLRFTPL-------------------------------------------------- 91 (335)
T ss_pred CCCeeecCChHHHHHHHHHHHHHHHhcCCc--------------------------------------------------
Confidence 999999999999999999998887766443
Q ss_pred cccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhcccchHHH
Q psy7164 1777 CADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLNPIVI 1856 (2307)
Q Consensus 1777 ~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~ 1856 (2307)
T Consensus 92 -------------------------------------------------------------------------------- 91 (335)
T cd03468 92 -------------------------------------------------------------------------------- 91 (335)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchhccCCCHHHHHHHHHHHHHHH
Q psy7164 1857 LLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKE 1936 (2307)
Q Consensus 1857 ~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~~~~~~~~~lA~~IR~~I~~~ 1936 (2307)
|+.+|+||+|+|+++..++++ ++..+|+.|++.+. +
T Consensus 92 ------------------------------------------ve~~s~de~~ldvs~~~~~~~-~~~~~a~~i~~~~~-~ 127 (335)
T cd03468 92 ------------------------------------------VALDGPDGLLLDVTGCLHLFG-GEDALAASLRAALA-T 127 (335)
T ss_pred ------------------------------------------cccCCCCeEEEEcccchhhcC-CHHHHHHHHHHHHH-H
Confidence 345567888888888877776 67899999999995 6
Q ss_pred hCCeEEEEecCCHHHHHHHhhccCCCCEEEeChhhHHH-HhhcCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHH
Q psy7164 1937 TGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISD-FMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQ 2015 (2307)
Q Consensus 1937 TG~tvSVGIA~NklLAKLASr~AKPnGq~~L~pe~v~~-fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~ 2015 (2307)
+|++||||||+|+++||||++.+||+|++.+.+..... ||.++|+. +||||+++.++|+++||+|++||+++|...|.
T Consensus 128 ~gl~~siGia~n~~~Aklas~~~kp~~~~~~~~~~~~~~~l~~lp~~-~~gig~~~~~~L~~~Gi~t~~dl~~~~~~~l~ 206 (335)
T cd03468 128 LGLSARAGIADTPGAAWLLARAGGGRGVLRREALAAALVLLAPLPVA-ALRLPPETVELLARLGLRTLGDLAALPRAELA 206 (335)
T ss_pred cCCeEEEEecCCHHHHHHHhccCCCCccCCchHHHHHhhccCCCChh-HhCCCHHHHHHHHHhCcccHHHHHhCChHHHH
Confidence 89999999999999999999999999988777666554 89999995 99999999999999999999999999999999
Q ss_pred hhhCcchHHHHHHHhcCCCCCcc--ccccCCcccEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhccccceEEEEEEE
Q psy7164 2016 NEVGNKNGLTLYKHCRGEDDKEL--TFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLM 2093 (2307)
Q Consensus 2016 ~~fG~k~G~~L~~~arGiD~~~V--~~~~~rKSIs~e~nfg~r~~~~eel~~~L~~La~eL~~RLr~~~~~~r~LTLkL~ 2093 (2307)
++|| ..|.++|+.++|+|+.++ .....+++++.+.+|+.+..+.+ .+.+.+|+.+|+.||+.+++.+++++|+++
T Consensus 207 ~rfG-~~~~~l~~~~~G~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~l~~~l~~~L~~~~~~~~~l~l~l~ 283 (335)
T cd03468 207 RRFG-LALLLRLDQAYGRDPEPLLFSPPPPAFDFRLELQLEEPIARGL--LFPLRRLLEQLCAFLALRGLGARRLSLTLF 283 (335)
T ss_pred hhcC-HHHHHHHHHHCCCCCCCCCCCCCCCChhhhhhcCCCCCcchhH--HHHHHHHHHHHHHHHHHcCCeeeEEEEEEE
Confidence 9999 579999999999999999 45567899999999998876655 999999999999999999999999999998
Q ss_pred EecCCCcccccccccCceeeeecceeccCcCChhHHHHHHHHHHhhhcCCC---CCceEEeeee
Q psy7164 2094 VRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPR---EASKFLGHGV 2154 (2307)
Q Consensus 2094 ~R~~~Ap~ep~K~lGhG~cD~~skS~~Lpt~~~~~L~~aA~~lL~~i~~~~---~~yr~~Gv~l 2154 (2307)
+.... ....+.+...|+.+...|.+.++.+++++. .+ ..++.+++.+
T Consensus 284 ~~~~~-------------~~~~~~~~~~~~~~~~~l~~l~~~~l~~~~-~~~~~~~v~~~~v~~ 333 (335)
T cd03468 284 REDGR-------------VTRVLVGLARPSRDDLPLLRLLRERLERLA-LPRGIAPVRLLALTA 333 (335)
T ss_pred EECCc-------------eEEEEEeccCCccCHHHHHHHHHhhhhccC-CCCCeeeEEEEEeec
Confidence 85432 223344445577788889999999998873 34 4566666543
No 41
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=100.00 E-value=8.2e-47 Score=473.67 Aligned_cols=238 Identities=33% Similarity=0.497 Sum_probs=181.2
Q ss_pred CCCCCCccccCCCCeeeecCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCC---C-CCcccCCCCCcEEEE-------
Q psy7164 657 IGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP---L-PMKPWYKNFKGEIDY------- 725 (2307)
Q Consensus 657 g~~iEP~vlppiiP~LLVNGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~---~-~l~P~ykGf~G~I~~------- 725 (2307)
|+.+||+||||+|||||||||+|||||||||||||||.|||+|++++|+|+++ + .+.|||+||+|+|..
T Consensus 120 g~~~EP~~~~p~iP~vLvNG~~GIa~G~sT~Ip~hN~~evi~~~~~~l~~~~~~l~~~~~~P~f~~~~g~i~~~~~~~~y 199 (426)
T PF00521_consen 120 GSEIEPEVYPPIIPMVLVNGASGIAVGMSTNIPPHNPREVIDAIIRLLDGEEIELMKYIMGPDFPTFGGIIEKNGIKNIY 199 (426)
T ss_dssp SSSEEESS---SS-HHHHHTEEEESSSEEEEE--B-HHHHHHHHHHHHHTTT-HHCTTSSSB--TTSCEEEECHHHHHHH
T ss_pred ccccchHHhhhcCcHHhccCCcchhhhhccCCCCCCHHHHHHHHHHHhCCCcccccccCCCCCCCCCCceeeccchhhhh
Confidence 99999999999999999999999999999999999999999999999999998 4 899999999999954
Q ss_pred -ecCcEEEEEEEEEEEcCCeEEEEecCCccchHHHHHHHHHHhcCCCcC--ccc--------------------------
Q psy7164 726 -CGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKD--EVH-------------------------- 776 (2307)
Q Consensus 726 -tg~g~~~vrG~~~~~~~~~IvITELPy~v~t~~~~e~La~Lv~~~~~~--~y~-------------------------- 776 (2307)
+|+|+|+++|++++++ ++|+||||||++||++|+++|++|++++++. +|.
T Consensus 200 ~tg~G~~~~~~~~~~~~-~~i~ITELP~~~~t~~~~e~i~~l~~~~~i~I~d~~D~Sd~~v~ivI~lk~~~~~~~~~~~L 278 (426)
T PF00521_consen 200 ETGRGSIEVRGKYEIEG-NTIVITELPYGVWTEKYKEKIEELVEDKKIKISDYRDESDRGVRIVIELKRGADPEKILEGL 278 (426)
T ss_dssp HHSEEEEEEEEEEEEET-EEEEEEE--TT--HHHHHHHHHHHHHTTSSTEEEEEE-BBTBS-EEEEESTTSHHHHHHHHH
T ss_pred ccCcceEEEeeEEEEec-cEEEEEeCCccccHHHHHHHHHHHhccCcchhhHHHhcCCCceeEEEEecCCccHHHHHHHH
Confidence 4669999999999988 9999999999999999999999999888766 421
Q ss_pred --cCCCC----------------CCCHHHHHHHHHHHHHHHHHHHHHh-hhh-------HHHhhcc-cCCCchHHHHHHH
Q psy7164 777 --PGPGR----------------KSHPRPIAPKSYKIDDDSEEEEIEE-VFH-------DNELAKP-QKTGPQLERQERQ 829 (2307)
Q Consensus 777 --~t~~~----------------~~sl~eIL~eF~~~Rl~~y~rr~e~-l~n-------i~~li~~-~~~d~~~a~~~~~ 829 (2307)
.+..+ ++++++||++|++||+++|++|.++ +.. +++|+.. ...+-+....+..
T Consensus 279 ~k~t~Lq~s~~~n~~~l~~~~p~~~~~~eIL~~f~~~R~~~~~kR~~~~l~kl~~~l~il~gl~~~~~~idfIi~vI~~s 358 (426)
T PF00521_consen 279 YKKTKLQSSISTNNMVLFDNGPKYDSLKEILKEFYEFRLEYYQKRKQYLLEKLEERLHILEGLIKALNKIDFIIEVIRGS 358 (426)
T ss_dssp HHHSTTEEEEEEETEEEETTEEEESSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHS
T ss_pred HHHhhhhccccchheEEecCcceeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc
Confidence 11111 3999999999999999999999988 221 3433333 2222222222211
Q ss_pred hhccccccccccCCCCCCChhhHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHccCch--hhHHHHHH
Q psy7164 830 AAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPT--DLWSDDLD 899 (2307)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~el~~ei~~L~~~s~~--~lw~~DL~ 899 (2307)
.. ...+...+++. +++.||+|||+||||+||++++++|++|++++++++++|++++++ ++|++||+
T Consensus 359 ~~--~~~~k~~L~~~--L~~~q~~yLL~m~L~~LT~~e~~kL~~e~~~l~~ei~~l~~~~~~~~~l~~~dLd 426 (426)
T PF00521_consen 359 ID--KNKAKKDLIEE--LSEEQADYLLSMPLRRLTKEEIEKLQKEIKELEKEIEELEKILPKIKDLWKKDLD 426 (426)
T ss_dssp SS--HHHHHHHHHHH--HCHHHHHHHHTSBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred cc--chHHHHHHHhh--chHHHHHHHHhchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 10 01111112222 667999999999999999999999999999999999999999999 99999996
No 42
>cd01030 TOPRIM_TopoIIA_like TOPRIM_TopoIIA_like: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II. TopoIIA enzymes cut both strands of the duplex DNA to remove (relax) both positive and negative supercoils in DNA. These enzymes covalently attach to the 5' ends of the cut DNA, separate the free ends of the cleaved strands, pass another region of the duplex through this gap, then rejoin the ends. These proteins also catenate/ decatenate duplex rings. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in strand joining and as a general acid in strand cleavage by topisomerases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=100.00 E-value=1.6e-46 Score=384.85 Aligned_cols=113 Identities=53% Similarity=0.857 Sum_probs=108.6
Q ss_pred cEEEEEecCccchhcccCcccccccc--eeeccCCcccchhhccchHHHhhcHHHHHHHHHhccccCCCcCCcCCCCCCC
Q psy7164 472 CTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLR 549 (2307)
Q Consensus 472 ceLfIvEGDSA~~~a~sGsak~gRD~--qaIlPLRGKiLNV~ka~~~ki~~N~EI~~Li~aLGlg~~~~y~~~~d~~~LR 549 (2307)
|||||||||||| |+|++|||+ |||||||||||||+|++.+||++|+||.+|++||||++++++ +|+++||
T Consensus 1 ~eL~lvEGDSA~-----gsak~gR~~~~qailPLrGKiLNv~ka~~~k~~~n~Ei~~l~~alG~~~~~~~---~~~~~lr 72 (115)
T cd01030 1 CELILVEGDSAG-----GSAKQGRDRVFQAVFPLRGKILNVEKASLKKILKNEEIQNIIKALGLGIGKDD---FDLDKLR 72 (115)
T ss_pred CEEEEEecCCcc-----hhhhhhcCcccEEEeccCCeeccHhcCCHHHHhcChHHHHHHHHhCCCCCccc---CChhhcC
Confidence 899999999998 777899996 999999999999999999999999999999999999998653 7899999
Q ss_pred CCcEEecccCCCCCCchhHHHHHHHHHhhhhhhcCCcEEEecC
Q psy7164 550 YGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFIT 592 (2307)
Q Consensus 550 YgkIiImTDaDvDG~HI~~LLltff~r~~p~Li~~G~vy~~~t 592 (2307)
|||||||||||+||+||++|||||||||||+|+++||||+|+|
T Consensus 73 Y~kiiimtDaD~DG~hI~~Llltff~~~~p~Li~~G~v~~~~~ 115 (115)
T cd01030 73 YGKIIIMTDADVDGSHIRTLLLTFFYRFWPSLLENGFLYIAQT 115 (115)
T ss_pred cCeEEEEeCCCCCccHhHHHHHHHHHHHhhHhhhCCEEEEeeC
Confidence 9999999999999999999999999999999999999999987
No 43
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=100.00 E-value=1.1e-45 Score=484.85 Aligned_cols=245 Identities=18% Similarity=0.183 Sum_probs=206.7
Q ss_pred CCCCCCccccCCCCeeeecCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCC--CCCcccCCC--C-CcE-E-------
Q psy7164 657 IGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP--LPMKPWYKN--F-KGE-I------- 723 (2307)
Q Consensus 657 g~~iEP~vlppiiP~LLVNGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~--~~l~P~ykG--f-~G~-I------- 723 (2307)
|+.+||+||||+|||||||||+|||||||||||||||.|||||++++|+|+++ ++|+||++| | +|. |
T Consensus 153 ~~~~EP~~lp~~~P~lLvNG~~GIavG~aT~ipphn~~evi~~~~~~i~~~~~~~~~l~~~~~gpdFptGg~ii~~~~~i 232 (742)
T PRK05561 153 GTLKEPTVLPARFPNLLLNGATGIAVGMATDIPPHNLREVIDAAIHLIDNPDATLEELMEFVPGPDFPTGGEIITGRDGI 232 (742)
T ss_pred CcccCccccccccchhhccCCcchhhhhhcCCCCCCHHHHHHHHHHHHhCCCCChHHHhhcccCCCCCCCcEEEeCchhH
Confidence 99999999999999999999999999999999999999999999999999976 689999999 5 554 5
Q ss_pred ---EEecCcEEEEEEEEEEEc----CCeEEEEecCCccchHHHHHHHHHHhcCCCcCc----------------------
Q psy7164 724 ---DYCGDSRFVVNGEIAILD----DDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE---------------------- 774 (2307)
Q Consensus 724 ---~~tg~g~~~vrG~~~~~~----~~~IvITELPy~v~t~~~~e~La~Lv~~~~~~~---------------------- 774 (2307)
|.+|+|+|++||++++++ +++|+||||||++|+++|+++|++|++++++.+
T Consensus 233 ~~~y~tg~G~~~~r~~~~~~~~~~~~~~i~itEiP~~~~~~~~~~~i~~l~~~~~~~~i~~~~d~s~~~~~~r~~i~~k~ 312 (742)
T PRK05561 233 RKAYETGRGSIRVRARWEIEDLAGGRWQIVITELPYQVSKAKLIEQIAELMNAKKLPGIADVRDESDRENPVRIVIEPKS 312 (742)
T ss_pred HHHhhcCCceEEEEEEEEEEecCCCCceEEEEeCCCcccHHHHHHHHHHHHhcCCccccccceeccCCCCCEEEEEEECC
Confidence 468999999999999886 678999999999999999999999998775321
Q ss_pred ------------cccCCCC-----------------CCCHHHHHHHHHHHHHHHHHHHHHh-hhh-------HHHhhcc-
Q psy7164 775 ------------VHPGPGR-----------------KSHPRPIAPKSYKIDDDSEEEEIEE-VFH-------DNELAKP- 816 (2307)
Q Consensus 775 ------------y~~t~~~-----------------~~sl~eIL~eF~~~Rl~~y~rr~e~-l~n-------i~~li~~- 816 (2307)
|++++.+ ++++++||++|++||+++|+||+++ |.+ +++|+..
T Consensus 313 ~~~~~~~~~~~l~k~t~l~~~~~~n~~~~d~~~~p~~~~l~~il~~f~~~R~~~~~rr~~~~l~k~~~r~~~l~g~~~~~ 392 (742)
T PRK05561 313 NRVDPEALMNHLFATTDLESSYRVNMNAIGLDGRPRVKGLKEILSEWLDHRREVVTRRSQFRLDKVEKRLHILEGLLIAF 392 (742)
T ss_pred CcCCHHHHHHHHHHhcCcceeeeeeEEEEccCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222 3999999999999999999999999 322 6666666
Q ss_pred cCCCchHHHHHHHhhccccccccccCCCCCCChhhHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHcc--CchhhH
Q psy7164 817 QKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKK--APTDLW 894 (2307)
Q Consensus 817 ~~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~el~~ei~~L~~~--s~~~lw 894 (2307)
...|.+....+.+. ++...+++.|.+++.||+|||+|+|++||++|++||++|+++|+++|++|+++ ++..+|
T Consensus 393 ~~id~vI~iir~s~-----~ak~~l~~~f~~~~~qa~~Il~m~L~~Lt~le~~kl~~E~~~l~~ei~~l~~iL~s~~~l~ 467 (742)
T PRK05561 393 LNIDEVIRIIRESD-----EPKANLMARFDLSEIQAEAILELRLRRLAKLEEIEIRKEQDELRKEIAELEAILASERKLR 467 (742)
T ss_pred hhHHHHHHHHhcCc-----cHHHHHHHHhCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 33444444333221 13445566788999999999999999999999999999999999999999999 999999
Q ss_pred ---HHHHHHHHHHhC
Q psy7164 895 ---SDDLDALREKDK 906 (2307)
Q Consensus 895 ---~~DL~el~k~l~ 906 (2307)
++||++++++|.
T Consensus 468 ~~i~~eL~~ik~kfg 482 (742)
T PRK05561 468 KLIKKELKADAKKFG 482 (742)
T ss_pred HHHHHHHHHHHHHhC
Confidence 778888777665
No 44
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=100.00 E-value=3e-45 Score=480.68 Aligned_cols=248 Identities=15% Similarity=0.198 Sum_probs=201.9
Q ss_pred CCCCCCccccCCCCeeeecCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCC-----CCCcccCCCCCcEE--------
Q psy7164 657 IGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP-----LPMKPWYKNFKGEI-------- 723 (2307)
Q Consensus 657 g~~iEP~vlppiiP~LLVNGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~-----~~l~P~ykGf~G~I-------- 723 (2307)
|+.+||+||||+|||||||||+|||||||||||||||.||||||+++|+++++ .++.||+.+|+|.|
T Consensus 144 ~~~~EP~~lp~~~P~lLvNGs~GIavG~aT~Ipphn~~evi~~~~~~i~~~~~~~~~l~~~~~~pdfptGg~i~~~~~i~ 223 (738)
T TIGR01061 144 DSEKEPTVLPALFPNLLINGATGIAAGYATNIPPHNLNEVIDALIYRIDHPNCSVDKLMEIVKGPDFPTGGIIQGEDGIS 223 (738)
T ss_pred CCccccccccccCCceeecCCcceeeeeecCCCCCCHHHHHHHHHHHhcCCCCChHHhcccccCCCCCCCcEEECchhhH
Confidence 89999999999999999999999999999999999999999999999999865 34567777788866
Q ss_pred --EEecCcEEEEEEEEEEE----cCCeEEEEecCCccchHHHHHHHHHHhcCCCcCc-----------------------
Q psy7164 724 --DYCGDSRFVVNGEIAIL----DDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE----------------------- 774 (2307)
Q Consensus 724 --~~tg~g~~~vrG~~~~~----~~~~IvITELPy~v~t~~~~e~La~Lv~~~~~~~----------------------- 774 (2307)
|.+|+|+|++||+++++ ++++|+||||||++|+++|+++|++|++++++.+
T Consensus 224 ~~y~tg~G~~~~rg~~~~e~~~~~~~~i~ItEiP~~~~~~~~~~~i~~l~~~~~~~~i~~~~Des~~~~vrivi~lk~~~ 303 (738)
T TIGR01061 224 KAYETGKGKFIIRAKIEIEVNKNGLNQIVITEIPYETNKANIVKKIEEIIFDNKVAGIEEVRDESDRNGIRIIIELKKDA 303 (738)
T ss_pred HheecCCceEEEEEEEEEEEcCCCCcEEEEEecCCccCHHHHHHHHHHHHhcCCccccceeeeccCCCceEEEEEECCCC
Confidence 78999999999998876 4678999999999999999999999998776422
Q ss_pred ---------cccCCCC----------------CCCHHHHHHHHHHHHHHHHHHHHHh-hhh-------HHHhhcc-cCCC
Q psy7164 775 ---------VHPGPGR----------------KSHPRPIAPKSYKIDDDSEEEEIEE-VFH-------DNELAKP-QKTG 820 (2307)
Q Consensus 775 ---------y~~t~~~----------------~~sl~eIL~eF~~~Rl~~y~rr~e~-l~n-------i~~li~~-~~~d 820 (2307)
|+.++.+ ++++++||++|++||+++|+||+++ |.+ ++++++. ..-|
T Consensus 304 ~~~~~~~~l~k~t~l~~~~~~n~~~~~~~~p~~~~l~~il~~~~~~R~~~~~rr~~~~l~k~~~r~~il~g~~~~~~~id 383 (738)
T TIGR01061 304 NAEKILNFLFKHTDLQINYNFNMVAIANRTPIQVGLLSYLDAYIKHCHEVIINRSKYELEKASKRLEIVEGLIKAISIID 383 (738)
T ss_pred CHHHHHHHHHHhccCcceeeeeEEEEECCcceECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2223333 3999999999999999999999999 332 5555554 2233
Q ss_pred chHHHHHHHhhccccccccccCCCCCCChhhHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHcc--Cc---hhhHH
Q psy7164 821 PQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKK--AP---TDLWS 895 (2307)
Q Consensus 821 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~el~~ei~~L~~~--s~---~~lw~ 895 (2307)
.+....+... ...++...+++.|.+++.||+|||+|+|++||++|++||++|+++|+++|++|+++ ++ ..+|+
T Consensus 384 ~~i~iir~~~--~~~~~~~~l~~~f~~~~~q~~~il~m~l~~lt~~e~~kl~~e~~~l~~~i~~l~~iL~~~~~~~~~i~ 461 (738)
T TIGR01061 384 EIIKLIRSSE--DKSDAKENLIDNFKFTENQAEAIVSLRLYRLTNTDIFELKEEQNELEKKIISLEQIIASEKARNKLLK 461 (738)
T ss_pred hHhHHHHcCC--CHHHHHHHHHHhcCCCHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3333332211 22345556777889999999999999999999999999999999999999999996 33 34457
Q ss_pred HHHHHHHHHhC
Q psy7164 896 DDLDALREKDK 906 (2307)
Q Consensus 896 ~DL~el~k~l~ 906 (2307)
+||.+++++|.
T Consensus 462 ~el~~ik~kfg 472 (738)
T TIGR01061 462 KQLEEYKKQFA 472 (738)
T ss_pred HHHHHHHHHhC
Confidence 77777777664
No 45
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=100.00 E-value=7.4e-45 Score=483.05 Aligned_cols=236 Identities=17% Similarity=0.186 Sum_probs=197.1
Q ss_pred CCCCCCccccCCCCeeeecCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCC--CCCcccCCCC---CcEE--------
Q psy7164 657 IGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP--LPMKPWYKNF---KGEI-------- 723 (2307)
Q Consensus 657 g~~iEP~vlppiiP~LLVNGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~--~~l~P~ykGf---~G~I-------- 723 (2307)
|+.+||+||||+|||||||||+|||||||||||||||+|||||++++|+++++ ++|+||++|| +|.|
T Consensus 156 ~~~~EP~vlp~~~P~lLvNG~~GIavG~aT~Ipphnl~evi~a~~~~i~~~~~~~~~l~~~~~gpDfptGg~i~~~~~i~ 235 (957)
T PRK13979 156 DSEKEPEVLPARYPNLLVNGAFGIAVGLATNIPPHNLKEVIDGTLAYIDNNEITTKELMNYIKGPDLPTGGILIGKKSLL 235 (957)
T ss_pred CCeeccccccccCCceeecCCcceeeeeecCCCCCCHHHHHHHHHHHhcCCCCCHHHHhhhccCCCCCCCeEEECchhHH
Confidence 99999999999999999999999999999999999999999999999999998 7899999998 6665
Q ss_pred --EEecCcEEEEEEEEEEE----cCCeEEEEecCCccchHHHHHHHHHHhcCCC----cCc-------------------
Q psy7164 724 --DYCGDSRFVVNGEIAIL----DDDKLEITELQVGKWTTDYKDTLDTLLHGAE----KDE------------------- 774 (2307)
Q Consensus 724 --~~tg~g~~~vrG~~~~~----~~~~IvITELPy~v~t~~~~e~La~Lv~~~~----~~~------------------- 774 (2307)
|.+|+|+|.+||+++++ ++++|+||||||++|+++|+++|++|+++++ +.+
T Consensus 236 ~~y~tg~G~~~~r~k~~~e~~~~~~~~ivitEiPy~~~~~~~~~~i~~l~~~~~~~~~~~~i~~~~desd~~g~rivi~l 315 (957)
T PRK13979 236 SAYETGEGKVTLRAKTKIEKLENGRLGIVITEFPYRRNKAKLLQTISEMTADKKHSKALENISDIRDESDRNGIRAVIEF 315 (957)
T ss_pred HHhhcCCCCEEEEEEEEEEEcCCCceEEEEEccCCcccHHHHHHHHHHHHhcccccccCccccchhhccCCCceEEEEEE
Confidence 67899999999999876 3567999999999999999999999997654 211
Q ss_pred ----------------cccCCCC----------------CCCHHHHHHHHHHHHHHHHHHHHHh-hhh-------HHHhh
Q psy7164 775 ----------------VHPGPGR----------------KSHPRPIAPKSYKIDDDSEEEEIEE-VFH-------DNELA 814 (2307)
Q Consensus 775 ----------------y~~t~~~----------------~~sl~eIL~eF~~~Rl~~y~rr~e~-l~n-------i~~li 814 (2307)
|+.++.+ .+++++||++|++||+++|+||+++ |.+ +++|+
T Consensus 316 k~~~~~~~~~~v~~~L~~~t~l~~~~~~n~~~~~~~~p~~~~l~~il~~~~~~r~~~~~rr~~~~l~k~~~r~~i~eGl~ 395 (957)
T PRK13979 316 KKSADEDVAEKVLKYLYKKTDLQCNISFNMVALADGKPETMGLKTMLKHYVEHQKEVVTRRTKKELEIAEKRFHIVEGFI 395 (957)
T ss_pred CCCCCcccHHHHHHHHHHhCCCeeEeeeeEEEEECCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222 1899999999999999999999999 332 56666
Q ss_pred cc-cCCCchHHHHHHHhhccccccccccCCCCCCChhhHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHcc--Cch
Q psy7164 815 KP-QKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKK--APT 891 (2307)
Q Consensus 815 ~~-~~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~el~~ei~~L~~~--s~~ 891 (2307)
.. ..-|.+....+.+. ...++...+++.|.+++.|++|||+|+|+|||++|+++|++|+++|+++|++|+.+ ++.
T Consensus 396 ~a~~~id~vi~~ir~s~--~~~~a~~~l~~~f~~s~~qa~aIl~mrL~~Lt~le~~kl~~E~~eL~~~I~~l~~iL~~~~ 473 (957)
T PRK13979 396 KAIGIMDEIIKTIRSSK--SKKDASENLIEKFGFTDEQAEAILELMLYRLTGLEIVAFEKEYKELEKLIKKLTKILSSEK 473 (957)
T ss_pred HHHHhHHHHHHHHHcCC--CHHHHHHHHHHHhCCCHHHHHHHHhCcHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 66 33344444443322 22455566778899999999999999999999999999999999999999999998 444
Q ss_pred hhH
Q psy7164 892 DLW 894 (2307)
Q Consensus 892 ~lw 894 (2307)
.+|
T Consensus 474 ~l~ 476 (957)
T PRK13979 474 ELL 476 (957)
T ss_pred HHH
Confidence 444
No 46
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=100.00 E-value=2.3e-44 Score=467.65 Aligned_cols=246 Identities=15% Similarity=0.153 Sum_probs=204.3
Q ss_pred cc-CCCCCCccccCCCCeeeecCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCC--CCCcccCCCC----CcEE----
Q psy7164 655 MF-IGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP--LPMKPWYKNF----KGEI---- 723 (2307)
Q Consensus 655 iF-g~~iEP~vlppiiP~LLVNGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~--~~l~P~ykGf----~G~I---- 723 (2307)
+| |+.+||+||||+|||||||||+|||||||||||||||+|||+||+++|++|++ .+|+|||+|| .|.|
T Consensus 142 n~Dg~~~EP~~lp~~~P~lLvNG~~GIavGmaT~IpphN~~ev~~a~~~~i~~~~~~~~~l~~~~~gPDfptgG~ii~~~ 221 (735)
T TIGR01062 142 NFDGTLLEPVILPARLPNILLNGTTGIAVGMATDIPPHNLHELADAALYLIDNPKAGLDDILNIVQGPDFPTEAEIIDKA 221 (735)
T ss_pred CCCCCccCCcccccccchhhhcCCcceEeeeecCCCCCCHHHHHHHHHHHHhCCCCCHHHHhhhccCCCCCCCcEEecCc
Confidence 45 99999999999999999999999999999999999999999999999999985 6899999995 3655
Q ss_pred ------EEecCcEEEEEEEEEEEcCCeEEEEecCCccchHHHHHHHHHHhcCCCcCc-----------------------
Q psy7164 724 ------DYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE----------------------- 774 (2307)
Q Consensus 724 ------~~tg~g~~~vrG~~~~~~~~~IvITELPy~v~t~~~~e~La~Lv~~~~~~~----------------------- 774 (2307)
|.||+|+|++||+|++++. +|+|||||||+|+++|+|+|+++++.+++..
T Consensus 222 ~~i~~~y~tg~G~~~~r~~~~~e~~-~ivItelP~~v~~~~~~e~i~~~~~~kk~~~i~d~~Des~~~~~vr~vi~~k~~ 300 (735)
T TIGR01062 222 EEIRKIYETGRGSFRMRARWKKEDG-QIVISALPHQISKSKVIEQIAIQMKDKKLPMISDIRDESDHENPIRVVIVPRSN 300 (735)
T ss_pred hhHHHHhccCCceEEEEEEEEEECC-eEEEEeCCCcccHHHHHHHHHHHHhcCCCcceeehhhcCCCcCcEEEEEEECCC
Confidence 6799999999999999875 8999999999999999999999998776321
Q ss_pred -----------cccCCCC-----------------CCCHHHHHHHHHHHHHHHHHHHHHh-hhh-------HHHhhcc-c
Q psy7164 775 -----------VHPGPGR-----------------KSHPRPIAPKSYKIDDDSEEEEIEE-VFH-------DNELAKP-Q 817 (2307)
Q Consensus 775 -----------y~~t~~~-----------------~~sl~eIL~eF~~~Rl~~y~rr~e~-l~n-------i~~li~~-~ 817 (2307)
|+.|+.+ .+++++||++|++||+++|+||+++ |.+ +++|+.. .
T Consensus 301 ~~~~~~~~~~L~~~t~L~~~~~~n~~~i~~~~~p~~~~l~~il~~~~~~R~~~~~rR~~~~l~k~~~rl~il~Gl~ia~~ 380 (735)
T TIGR01062 301 RVDPDIVMEHLFATTDLEKSYRLNMNMIGLDNVPAVKNLLEILQEWLVFRRNTVIRRLTYRLNKVLQRLHILEGLRIAFL 380 (735)
T ss_pred CCCHHHHHHHHHHhcCCeeeecccEEEEEeCCeeeECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222 2899999999999999999999988 222 5555555 3
Q ss_pred CCCchHHHHHHHhhccccccccccCCCCCCChhhHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHcc--CchhhH-
Q psy7164 818 KTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKK--APTDLW- 894 (2307)
Q Consensus 818 ~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~el~~ei~~L~~~--s~~~lw- 894 (2307)
.-|.+...++.+ +++...++..|.+++.|++|||+|+|++||++|..+|++|+++|++++++|+++ ++..+|
T Consensus 381 ~iDevI~iIR~s-----~~~k~~L~~~f~ls~~QaeaIL~mrL~~L~~le~~~i~~E~~~l~~e~~~l~~~L~~~~~~~~ 455 (735)
T TIGR01062 381 NIDEVIEIIREE-----DEPKTILMERFKLSAIQAEAILNLRLRHLAKLEEHAIIDEQSELEKERAILEKILKSERELNQ 455 (735)
T ss_pred hHHHHHHHHHcC-----hhhHHHHHHhcCCCHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 334444444322 234455677899999999999999999999999999999999999999999998 777777
Q ss_pred --HHHHHHHHHHhC
Q psy7164 895 --SDDLDALREKDK 906 (2307)
Q Consensus 895 --~~DL~el~k~l~ 906 (2307)
+++|.+++++|.
T Consensus 456 ~i~~el~~~~~~~g 469 (735)
T TIGR01062 456 LVKKEIQADATKYG 469 (735)
T ss_pred HHHHHHHHHHHHhC
Confidence 466776666664
No 47
>COG0188 GyrA Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.7e-44 Score=464.64 Aligned_cols=238 Identities=18% Similarity=0.190 Sum_probs=195.8
Q ss_pred cc-CCCCCCccccCCCCeeeecCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCC--CCCcccCCCCC----cEE----
Q psy7164 655 MF-IGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP--LPMKPWYKNFK----GEI---- 723 (2307)
Q Consensus 655 iF-g~~iEP~vlppiiP~LLVNGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~--~~l~P~ykGf~----G~I---- 723 (2307)
+| |+.+||+|||++|||||||||+|||||||||||||||.|||||++++|+||++ .+++.++||+. |.|
T Consensus 148 NyDg~~~EP~VLPa~~PnLLvNGssGIAVGmATnIPPHNl~Evida~~~li~np~~~~~~lm~~i~GPDFPTgg~I~g~~ 227 (804)
T COG0188 148 NYDGSEKEPEVLPARFPNLLVNGSSGIAVGMATNIPPHNLGEVIDALIALIDNPDATIDELMEIIKGPDFPTGGIIIGRS 227 (804)
T ss_pred CCCCCccCCccccccCCeeEeccCCceecceecCCCCCCHHHHHHHHHHHHcCCCCchhhhhhccCCCCCCCcceEecch
Confidence 45 99999999999999999999999999999999999999999999999999987 34455555532 333
Q ss_pred -----EEecCcEEEEEEEEEEEc----CCeEEEEecCCccchHHHHHHHHHHhcCCCcCc--------------------
Q psy7164 724 -----DYCGDSRFVVNGEIAILD----DDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE-------------------- 774 (2307)
Q Consensus 724 -----~~tg~g~~~vrG~~~~~~----~~~IvITELPy~v~t~~~~e~La~Lv~~~~~~~-------------------- 774 (2307)
|.||+|++++||+++++. +++|+|||||||+||++++|+|++|++++++.+
T Consensus 228 ~I~~aY~tGrG~i~vRa~~~iE~~~~gr~~IvItEiPyqvnka~lie~Iaelv~~kki~gis~vrDEsdr~giRivIelk 307 (804)
T COG0188 228 GIREAYETGRGSIRVRAKAEIEDTKNGREQIVITEIPYQVNKAKLIEKIAELVKEKKIEGISDIRDESDREGIRIVIELK 307 (804)
T ss_pred hhHHHHccCCceEEEEEEEEEEecCCCceEEEEEecCccccHHHHHHHHHHHHhcCCccCcccccccccCCCeEEEEEEC
Confidence 679999999999999874 678999999999999999999999999987433
Q ss_pred ------------cccCCCC----------------CCCHHHHHHHHHHHHHHHHHHHHHh-hhh-------HHHhhcc-c
Q psy7164 775 ------------VHPGPGR----------------KSHPRPIAPKSYKIDDDSEEEEIEE-VFH-------DNELAKP-Q 817 (2307)
Q Consensus 775 ------------y~~t~~~----------------~~sl~eIL~eF~~~Rl~~y~rr~e~-l~n-------i~~li~~-~ 817 (2307)
|++|+.| +++|++||++|++||+++++||.+| |++ +++++.. .
T Consensus 308 ~~~~~~~vln~Lfk~T~LQ~~f~~nm~ai~~~~P~~~~L~~iL~~~~~hr~~vi~rR~~~~L~Ka~~R~hileGl~~a~~ 387 (804)
T COG0188 308 RDAVAEVVLNNLFKLTDLQTSFNVNMLALVNGRPKVLNLKEILSEFLEHRLEVVTRRTEYELNKAEERLHILEGLLIALL 387 (804)
T ss_pred CccchHHHHHHHHHhchHHhhhCceeEEecCCcceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554 2999999999999999999999888 332 5555555 3
Q ss_pred CCCchHHHHHHHhhccccccccccCCCCCCChhhHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHcc--CchhhH
Q psy7164 818 KTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKK--APTDLW 894 (2307)
Q Consensus 818 ~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~el~~ei~~L~~~--s~~~lw 894 (2307)
..|.+...++.+.. -.++.+.+++.|.+++.|+++||+|+|++||.+|++++++|+++|.++|++|+.. ++..+|
T Consensus 388 ~iDevI~iIr~s~~--~~~a~~~L~~~f~lse~Qa~aIl~mrL~rLt~le~~~i~~E~~~L~~~i~~l~~iL~s~~~~~ 464 (804)
T COG0188 388 NIDEVIEIIRESKD--KPEAKEELMARFGLSEKQAEAILDLRLRRLTGLEEEKIEKELKELEKEIADLEKILASEERLL 464 (804)
T ss_pred hhHHHHHHHHcCCC--chHHHHHHHHHcCCcHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34444444443332 1344456777899999999999999999999999999999999999999999998 444444
No 48
>cd03365 TOPRIM_TopoIIA TOPRIM_TopoIIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II. TopoIIA enzymes cut both strands of the duplex DNA to remove (relax) both positive and negative supercoils in DNA. These enzymes covalently attach to the 5' ends of the cut DNA, separate the free ends of the cleaved strands, pass another region of the duplex through this gap, then rejoin the ends. These proteins also catenate/ decatenate duplex rings. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in strand joining and as a general acid in strand cleavage by topisomerases. The DXD motif may co-ordinate Mg2+, a cofact
Probab=100.00 E-value=7.9e-45 Score=374.38 Aligned_cols=119 Identities=78% Similarity=1.206 Sum_probs=108.6
Q ss_pred cEEEEEecCccchhcccCcccccccceeeccCCcccchhhccchHHHhhcHHHHHHHHHhccccCCCcCCcCCCCCCCCC
Q psy7164 472 CTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYG 551 (2307)
Q Consensus 472 ceLfIvEGDSA~~~a~sGsak~gRD~qaIlPLRGKiLNV~ka~~~ki~~N~EI~~Li~aLGlg~~~~y~~~~d~~~LRYg 551 (2307)
|||||||||||||+|+.|..+.+|++|||||||||||||+|++.+||++|+||.+|++||||++++. +.+|+++|||+
T Consensus 1 ~eLflvEGDSA~gsak~gr~~~dr~~qailPLrGKiLNv~ka~~~ki~~n~Ei~~li~alG~g~~~~--~~~~~~~lrY~ 78 (120)
T cd03365 1 CTLILTEGDSAKALAVAGLSVVGRDYYGVFPLRGKLLNVREASHKQIMENAEIQNIKKILGLQHGKS--DYESTKSLRYG 78 (120)
T ss_pred CEEEEEeCCCchhhHHhhhccCCCceEEEeccCCccchhhcCCHHHHhcCHHHHHHHHHhCCCCCcc--cccccccCCcC
Confidence 8999999999997666665555566799999999999999999999999999999999999999851 12789999999
Q ss_pred cEEecccCCCCCCchhHHHHHHHHHhhhhhhcC-CcEEEecC
Q psy7164 552 RLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRL-PFLEEFIT 592 (2307)
Q Consensus 552 kIiImTDaDvDG~HI~~LLltff~r~~p~Li~~-G~vy~~~t 592 (2307)
|||||||||+||+||++|||||||||||+||++ |||+.|.|
T Consensus 79 kiiimtDaD~DG~hI~~Llltff~r~~p~Li~~~~fi~~~~t 120 (120)
T cd03365 79 RLMIMTDQDHDGSHIKGLLINFIHSFWPSLLKIPGFLVEFIT 120 (120)
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHhHHHhcCCCHHHHhcC
Confidence 999999999999999999999999999999998 99988765
No 49
>PRK05560 DNA gyrase subunit A; Validated
Probab=100.00 E-value=6.6e-44 Score=474.16 Aligned_cols=248 Identities=16% Similarity=0.160 Sum_probs=199.5
Q ss_pred CCCCCCccccCCCCeeeecCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCCC--CCcccCC-----------CCCcEE
Q psy7164 657 IGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPL--PMKPWYK-----------NFKGEI 723 (2307)
Q Consensus 657 g~~iEP~vlppiiP~LLVNGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~~--~l~P~yk-----------Gf~G~I 723 (2307)
|+.+||+||||+|||||||||+||||||||+||||||.|||+|++++|+++++. +|+||++ |++|.+
T Consensus 148 ~~~~EP~~~p~~~P~~LvNG~~GIa~G~at~ip~hn~~evi~~~~~~l~~~~~~~~~l~~~~~gpdfptgg~i~~~~~~~ 227 (805)
T PRK05560 148 GSEQEPTVLPARFPNLLVNGSSGIAVGMATNIPPHNLGEVIDACLALIDNPDITIEELMEIIPGPDFPTGGIILGRSGIR 227 (805)
T ss_pred CcccCcccccccCCeeeecCCcceeeeeecCCCCCCHHHHHHHHHHHhcCCCCCHHHHhhcCCCCCCCCccEEECccchh
Confidence 999999999999999999999999999999999999999999999999999874 6777666 455655
Q ss_pred --EEecCcEEEEEEEEEEE---cCCeEEEEecCCccchHHHHHHHHHHhcCCCcCc------------------------
Q psy7164 724 --DYCGDSRFVVNGEIAIL---DDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE------------------------ 774 (2307)
Q Consensus 724 --~~tg~g~~~vrG~~~~~---~~~~IvITELPy~v~t~~~~e~La~Lv~~~~~~~------------------------ 774 (2307)
|.+|+|+|++||+++++ ++++|+||||||++|+++|+++|++|++.+++.+
T Consensus 228 ~~~~~g~g~~~~~~~~~~~~~~~~~~i~iteiP~~~~~~~~~~~i~~~~~~~~~~~i~~~~d~s~~~~~~~~i~~~~~~~ 307 (805)
T PRK05560 228 EAYRTGRGSIVMRAKAEIEEIKGREAIIVTEIPYQVNKARLIEKIAELVKEKKIEGISDLRDESDRDGMRIVIELKRDAV 307 (805)
T ss_pred hheecCCceEEEEEEEEEEecCCCcEEEEEeCCCccCHHHHHHHHHHHHhcCCCCccccchhcCCCCceEEEEEECCCCC
Confidence 67999999999999987 4788999999999999999999999998775432
Q ss_pred --------cccCCCC----------------CCCHHHHHHHHHHHHHHHHHHHHHh-hhh-------HHHhhcc-cCCCc
Q psy7164 775 --------VHPGPGR----------------KSHPRPIAPKSYKIDDDSEEEEIEE-VFH-------DNELAKP-QKTGP 821 (2307)
Q Consensus 775 --------y~~t~~~----------------~~sl~eIL~eF~~~Rl~~y~rr~e~-l~n-------i~~li~~-~~~d~ 821 (2307)
|+.++.+ ++++.+||++|++||+++|++|+++ |.+ +++++.. ...|.
T Consensus 308 ~~~~~~~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~il~~~~~~r~~~~~~r~~~~l~~~~~~~~~l~g~~~~~~~~d~ 387 (805)
T PRK05560 308 PEVVLNNLYKHTQLQTSFGINMLALVDGQPKLLNLKEILEAFLEHRKEVITRRTRFELRKAEERAHILEGLLIALDNIDE 387 (805)
T ss_pred HHHHHHHHHHhcCCeeeeeeeEEEEECCEeEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 1122222 3999999999999999999999998 222 5555555 22233
Q ss_pred hHHHHHHHhhccccccccccCCCCCCChhhHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHcc--CchhhH---HH
Q psy7164 822 QLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKK--APTDLW---SD 896 (2307)
Q Consensus 822 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~el~~ei~~L~~~--s~~~lw---~~ 896 (2307)
+....+.+. ...++...+++.|.+++.||+|||+|+|++||++|++||++|+++|+++|++|+.+ ++..+| ++
T Consensus 388 vI~iir~s~--~~~~~~~~L~~~f~~~~~qa~~IL~m~L~~LT~~e~~kL~~E~~~l~~ei~~l~~iL~~~~~l~~~i~~ 465 (805)
T PRK05560 388 VIALIRASP--TPAEAKEGLMERFGLSEIQAQAILDMRLQRLTGLERDKIEDEYKELLALIADLKDILASPERLLEIIKE 465 (805)
T ss_pred HHHHHHcCC--CHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 333222211 12334455666789999999999999999999999999999999999999999998 555554 56
Q ss_pred HHHHHHHHhC
Q psy7164 897 DLDALREKDK 906 (2307)
Q Consensus 897 DL~el~k~l~ 906 (2307)
+|++++++|.
T Consensus 466 EL~~ikkkfg 475 (805)
T PRK05560 466 ELLEIKEKFG 475 (805)
T ss_pred HHHHHHHHhC
Confidence 6666666543
No 50
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=100.00 E-value=3.6e-43 Score=466.23 Aligned_cols=260 Identities=15% Similarity=0.139 Sum_probs=203.9
Q ss_pred CCCCCCccccCCCCeeeecCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCCC-----CCc-----cc---CCCCCcEE
Q psy7164 657 IGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPL-----PMK-----PW---YKNFKGEI 723 (2307)
Q Consensus 657 g~~iEP~vlppiiP~LLVNGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~~-----~l~-----P~---ykGf~G~I 723 (2307)
|+.+||+||||+|||||||||+||||||||+||||||.|||||++++|+++++. ++. || +.|++|.+
T Consensus 144 ~~~~EP~~lp~~~P~lLvNG~~GIa~G~at~ip~hn~~evi~~~~~~~~~~~~~~~~l~~~~~gpdfp~gg~i~~~~g~~ 223 (800)
T TIGR01063 144 GSEQEPTVLPSRFPNLLVNGSSGIAVGMATNIPPHNLGEIIDALLAYIDNPDISIQELLEVIKGPDFPTGGIILGRSGIR 223 (800)
T ss_pred CcccCccccccccchheecCCcceeeeeecCCCCCCHHHHHHHHHHHhcCCCCChHHHHhcCCCCCCCCccEEECccchh
Confidence 999999999999999999999999999999999999999999999999999762 222 44 34566655
Q ss_pred --EEecCcEEEEEEEEEEE----cCCeEEEEecCCccchHHHHHHHHHHhcCCCcCc-----------------------
Q psy7164 724 --DYCGDSRFVVNGEIAIL----DDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE----------------------- 774 (2307)
Q Consensus 724 --~~tg~g~~~vrG~~~~~----~~~~IvITELPy~v~t~~~~e~La~Lv~~~~~~~----------------------- 774 (2307)
|.+|+|+|++||+++++ ++++|+||||||++|+++|+++|+++++.+++.+
T Consensus 224 ~~y~~g~g~~~~~~~~~~~~~~~~~~~i~IteiP~~~~~~~~~~~i~~~~~~~~~~~i~~~~d~s~~~~~~~~i~~k~~~ 303 (800)
T TIGR01063 224 SAYETGRGSIVIRARAEIEEDSKGREAIIVTEIPYQVNKARLIEKIAELVREKKIEGISDIRDESDREGIRIVIELKRDA 303 (800)
T ss_pred hhhccCCceEEEEEEEEEEeccCCCcEEEEEecCCcccHHHHHHHHHHHHhcCCCCccccceecCCCCceEEEEEeCCCC
Confidence 57999999999999876 3578999999999999999999999998876432
Q ss_pred ---------cccCCCC----------------CCCHHHHHHHHHHHHHHHHHHHHHh-hhh-------HHHhhcc-cCCC
Q psy7164 775 ---------VHPGPGR----------------KSHPRPIAPKSYKIDDDSEEEEIEE-VFH-------DNELAKP-QKTG 820 (2307)
Q Consensus 775 ---------y~~t~~~----------------~~sl~eIL~eF~~~Rl~~y~rr~e~-l~n-------i~~li~~-~~~d 820 (2307)
|+.+..+ ++++++||++|++||+++|++|+++ |.+ ++++++. ...|
T Consensus 304 ~~~~~~~~l~k~t~l~~~~~~n~~~~~~~~~~~~~~~~il~~~~~~r~~~~~~r~~~~l~~~~~~~~~~~g~~~~~~~~d 383 (800)
T TIGR01063 304 VAEVVLNNLYKQTQLQVSFGINMLALVKGLPKVLNLKELLEAFVEHRKDVITRRTIFELRKAEERAHILEGLLIALDNID 383 (800)
T ss_pred CHHHHHHHHHHhcccceeeeeeEEEEECCEeeECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1122222 3999999999999999999999998 322 5666665 3334
Q ss_pred chHHHHHHHhhccccccccccCCCCCCChhhHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHccCchhhHHHHHHH
Q psy7164 821 PQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDA 900 (2307)
Q Consensus 821 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~el~~ei~~L~~~s~~~lw~~DL~e 900 (2307)
.+....+... ...++...+++.|.+++.||+|||+|+|++||++|+++|++|+++|+++|++|+.+ +++.++
T Consensus 384 ~vi~~ir~~~--~~~~~~~~L~~~~~~~~~qa~~il~m~L~~Lt~~e~~kl~~e~~~l~~ei~~l~~i------L~~~~~ 455 (800)
T TIGR01063 384 EVIALIRASQ--NTEEAKTRLVERFSLSEIQAQAILDMRLQRLTGLEREKLQEEYKELLELIADLEDI------LASEER 455 (800)
T ss_pred HHHHHHHhCC--CHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------HcCHHH
Confidence 4444333222 22344556677789999999999999999999999999999999999999999998 444444
Q ss_pred HHHHhCCCCCCCCCcccccccccccCCCCCCcccccc
Q psy7164 901 LREKDKIHPCPGGNRTRGLALKRQTRYQPSNRVLTSR 937 (2307)
Q Consensus 901 l~k~l~k~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 937 (2307)
+.+.+++++ ..+|+ +|+++|| |.+
T Consensus 456 l~~vi~~EL---------~eikk--kfg~~RR--T~I 479 (800)
T TIGR01063 456 VLEIIREEL---------EEIKE--QFGDPRR--TEI 479 (800)
T ss_pred HHHHHHHHH---------HHHHH--HhCCCCC--cee
Confidence 444444333 22333 6777778 665
No 51
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=100.00 E-value=3.4e-42 Score=438.67 Aligned_cols=244 Identities=20% Similarity=0.186 Sum_probs=187.3
Q ss_pred CCCCCCccccCCCCeeeecCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCCCCCcccCCCCCcEE-----EEecCcEE
Q psy7164 657 IGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNFKGEI-----DYCGDSRF 731 (2307)
Q Consensus 657 g~~iEP~vlppiiP~LLVNGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~~~l~P~ykGf~G~I-----~~tg~g~~ 731 (2307)
|+.+||+||||+|||||||||+|||||||||||||||+|||+|++++|+|+++ .+.|||+ +|.| |.+|+|+|
T Consensus 133 g~~~EP~~lp~~~P~lLvNGa~GIavG~aT~IpphN~~evi~a~~~~l~~~~~-~~~PdFp--tGgii~~~~Y~tG~G~~ 209 (635)
T PRK09631 133 GRNNEPLCLPAKIPVILIQGAEGIAVGMATKILPHNFNEILQAVKSELLGESF-ALYPDFP--TGGIVDVSEYADGNGKV 209 (635)
T ss_pred CCccCCccccccCceeeecCCcceeeeeecCCCCCCHHHHHHHHHHHhcCCCc-cccCCCC--CCcEEEeeeeecCCceE
Confidence 99999999999999999999999999999999999999999999999999988 4589995 5554 34799999
Q ss_pred EEEEEEEEEcCCeEEEEecCCccchHHHHHHHHHHhcCCCcC-----c-------------------------cccCCCC
Q psy7164 732 VVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKD-----E-------------------------VHPGPGR 781 (2307)
Q Consensus 732 ~vrG~~~~~~~~~IvITELPy~v~t~~~~e~La~Lv~~~~~~-----~-------------------------y~~t~~~ 781 (2307)
++||+++.++.++|+||||||++||++|++.|+++++.+++. + |++++.|
T Consensus 210 ~~r~~~~~~~~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~I~~i~D~s~~~v~i~i~l~~~~~~~~~~~~Lyk~t~lq 289 (635)
T PRK09631 210 LVRAKIETKDEKTIVIREIPFGTTTESLIASIEKAARKGKIKISSINDYTAENVEIEIKLPRGVYASEVIEALYAYTDCE 289 (635)
T ss_pred EEEEEEEEecCCEEEEEeCCCcccHHHHHHHHHHHHHcCCCccceeEeCCCCcEEEEEEECCCCCHHHHHHHHHHhcCce
Confidence 999999999888999999999999999999999999877631 1 3334433
Q ss_pred ----------------CCCHHHHHHHHHHHHHHHHHHHHHh-hhh---------HHHhhcccCCCchHHHHHHH-hhccc
Q psy7164 782 ----------------KSHPRPIAPKSYKIDDDSEEEEIEE-VFH---------DNELAKPQKTGPQLERQERQ-AAEGE 834 (2307)
Q Consensus 782 ----------------~~sl~eIL~eF~~~Rl~~y~rr~e~-l~n---------i~~li~~~~~d~~~a~~~~~-~~~~~ 834 (2307)
.+++++||++|++||.+++++|+++ |.+ +++++.. +.+-...... ...+.
T Consensus 290 ~s~~~n~~~i~~~~p~~~~l~~il~~~~~~r~~vl~rr~~~~l~k~~~r~h~~~legl~i~---~~i~~~i~~~~~~~~v 366 (635)
T PRK09631 290 VSISVNLLVIKDRYPVIYTVTDIIKFHAEHLQKVLKMELELERAKLLEKIFAKTLEQIFIE---ERIYKRIETISSEEDV 366 (635)
T ss_pred eEeeeeEEEEECCcCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHhh---hhHHHHHHhhcCHHHH
Confidence 3999999999999999999999998 333 2222221 0000000000 00000
Q ss_pred cccccccCCCC------CCChhhHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHcc--CchhhHHHHHHHHHHHhC
Q psy7164 835 DDEAGSQTQEE------EDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKK--APTDLWSDDLDALREKDK 906 (2307)
Q Consensus 835 ~~~~~~~~~~~------~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~el~~ei~~L~~~--s~~~lw~~DL~el~k~l~ 906 (2307)
.+.....+..+ .+++.|+++||+|||+|||++|++||++|+++|+++|++|++. +-.+.-+++|++++++|.
T Consensus 367 ~~~i~~~~~~~~~~l~~~~t~~qa~ail~mrl~rlt~~e~~k~~~e~~~l~~~i~~~~~~L~~~~~~~~~el~~l~~kyg 446 (635)
T PRK09631 367 ISIVLSELKPFKEELSRDVTEEDIENLLKIPIRRISLFDIDKNQKEIRILNKELKSVEKNLKSIKGYAINFIDKLLAKYS 446 (635)
T ss_pred HHHHHhccchhhHhhhcCCCHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 01111111112 6899999999999999999999999999999999999999987 222223555555555554
No 52
>PRK12758 DNA topoisomerase IV subunit A; Provisional
Probab=100.00 E-value=8.3e-41 Score=429.40 Aligned_cols=227 Identities=20% Similarity=0.162 Sum_probs=184.0
Q ss_pred CCCCCCccccCCCCeeeecCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCCCCCcccCCCCCcEEE-----EecC--c
Q psy7164 657 IGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNFKGEID-----YCGD--S 729 (2307)
Q Consensus 657 g~~iEP~vlppiiP~LLVNGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~~~l~P~ykGf~G~I~-----~tg~--g 729 (2307)
|+.+||+|||++|||||||||+|||||||||||||||.|||+|++++|+|+++. +.|||+ +|.|. .+|. |
T Consensus 152 g~~~EP~~LP~k~P~lLvNGs~GIAvG~aT~IpPHN~~Evida~~~~l~~~~~~-~~PDFp--TGgii~~~~y~~G~~~G 228 (869)
T PRK12758 152 GRKKEPVTLPVKFPLLLAQGAEGIAVGLSTKILPHNFNELIDASIAYLKGKEFK-LYPDFP--TGGIIDVSNYNDGERGG 228 (869)
T ss_pred CcccccccccCcCceeeeccCcceeeccccCCCCCCHHHHHHHHHHHhcCCCCC-CCCCCC--CCcEEEeeecccCccce
Confidence 999999999999999999999999999999999999999999999999999884 789995 65553 3676 9
Q ss_pred EEEEEEEEEEEcCCeEEEEecCCccchHHHHHHHHHHhcCCCcC--c----------------------------cccCC
Q psy7164 730 RFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKD--E----------------------------VHPGP 779 (2307)
Q Consensus 730 ~~~vrG~~~~~~~~~IvITELPy~v~t~~~~e~La~Lv~~~~~~--~----------------------------y~~t~ 779 (2307)
+|++||+++..++++|+||||||++||++|++.|+++++.+++. + |++++
T Consensus 229 ~i~vrgkie~~~~~~ivItEiPy~~~t~~lie~I~~~~~~~ki~I~di~D~s~~~vrivI~lk~~~~~~~~~~~Ly~~T~ 308 (869)
T PRK12758 229 RVRVRAKIEKLDKKTLVITEIPYGTTTSSLIDSILKANDKGKIKIKKVEDNTAADVEILVHLAPGVSPDKTIDALYAFTD 308 (869)
T ss_pred EEEEEEEEEEcCCCEEEEEecCCcccHHHHHHHHHHHHhcCCCceeeeEecCCCceEEEEEeCCCCCHHHHHHHHHhhcC
Confidence 99999999988899999999999999999999999999887642 1 33444
Q ss_pred CC----------------CCCHHHHHHHHHHHHHHHHHHHHHh-hhh------HHHhhcccCCCchHHHHHHHhhccccc
Q psy7164 780 GR----------------KSHPRPIAPKSYKIDDDSEEEEIEE-VFH------DNELAKPQKTGPQLERQERQAAEGEDD 836 (2307)
Q Consensus 780 ~~----------------~~sl~eIL~eF~~~Rl~~y~rr~e~-l~n------i~~li~~~~~d~~~a~~~~~~~~~~~~ 836 (2307)
.+ ++++.|||++|++||++++++|+++ |.+ +..|-.++..|.+....+.+. ..++
T Consensus 309 lq~s~s~n~~vi~d~~P~~~~l~eiL~~~~~~r~~vl~rr~~~~l~k~~er~hi~~le~i~i~d~Ii~~Ir~s~--~~~~ 386 (869)
T PRK12758 309 CEVSISPNACVIIDNKPHFLGVSDILRRSTDHTVSLLKQELEIRLSELEEQWHFASLEKIFIEERIYKEIEEAE--TWEA 386 (869)
T ss_pred ceeEeeeeEEEEECCeeeECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHHHHcCC--CHHH
Confidence 44 3999999999999999999999998 333 211111122233333333211 1222
Q ss_pred cccccCCCC---------CCChhhHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHcc
Q psy7164 837 EAGSQTQEE---------EDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKK 888 (2307)
Q Consensus 837 ~~~~~~~~~---------~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~el~~ei~~L~~~ 888 (2307)
+...+++.| .+++.|+++||+|+|+|||+++++|+++|+++|+++|++|+..
T Consensus 387 a~~~l~~~~~p~~~~l~r~lte~qa~aIlemrL~rlt~le~~k~~~e~~~l~~~i~~~~~~ 447 (869)
T PRK12758 387 VIEAIDKGLEPFKKQFIREVTEDDIVRLTEIKIKRISKFDSDKADELIARLEAEIAEVKHH 447 (869)
T ss_pred HHHHHHHhcccchhhhcCCCCHHHHHHHHHhHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334 5899999999999999999999999999999999999999987
No 53
>PRK09630 DNA topoisomerase IV subunit A; Provisional
Probab=100.00 E-value=1e-35 Score=361.11 Aligned_cols=230 Identities=15% Similarity=0.125 Sum_probs=175.8
Q ss_pred CCCCCCccccCCCCeeeecCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCCCCCcccCCCCCcEE----EEecCcEEE
Q psy7164 657 IGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNFKGEI----DYCGDSRFV 732 (2307)
Q Consensus 657 g~~iEP~vlppiiP~LLVNGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~~~l~P~ykGf~G~I----~~tg~g~~~ 732 (2307)
|+.+||+||||+|||||||||+|||||||||||||||.|||+|++++|+|+++..+.||+.| |.| |.+|+|+|+
T Consensus 133 g~~~EP~~lP~~iP~LLvNGa~GIAvG~AT~IpPHNl~Evida~i~~L~~~~~~~~PDFptG--G~I~~~~Y~tG~G~~~ 210 (479)
T PRK09630 133 GREKEPDILPAKLPLLLLHGVDGIAVGMTTKIFPHNFCELLEAQIAILNDQPFTLLPDFPSG--GTMDASEYQDGLGSIT 210 (479)
T ss_pred CcccCCcccCCcCCeecccCCceeeeccccCCCCCCHHHHHHHHHHHhCCCCCcCCcCCCCC--cEEEEeecccCCceEE
Confidence 99999999999999999999999999999999999999999999999999999776667777 777 448999999
Q ss_pred EEEEEEEEcCCeEEEEecCCccchHHHHHHHHHHhcCCCc--Cc----------------------------cccCCCC-
Q psy7164 733 VNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEK--DE----------------------------VHPGPGR- 781 (2307)
Q Consensus 733 vrG~~~~~~~~~IvITELPy~v~t~~~~e~La~Lv~~~~~--~~----------------------------y~~t~~~- 781 (2307)
+||+++.+++++|+||||||++||++|+++|+++++.+++ .+ |++|+.|
T Consensus 211 vrgk~~~~~~~~ivItEIPy~~~t~~lie~I~~l~~~gki~I~~i~D~s~~~v~i~I~Lk~~~~~~~vl~~Ly~~T~lq~ 290 (479)
T PRK09630 211 LRASIDIINDKTLLIKEICPSTTTETLIRSIENAAKRGIIKIDSIQDFSTDLPHIEIKLPKGIYAKDLLRPLFTHTECQV 290 (479)
T ss_pred EEEEEEEecCCEEEEEeCCCcccHHHHHHHHHHHHhcCCCccceeeccCCCCceEEEEECCCCCHHHHHHHHHhhCchhh
Confidence 9999999988899999999999999999999999988765 21 3344444
Q ss_pred ---------------CCCHHHHHHHHHHHHHHHHHHHHHh----hhh------H-HHhhcc--cCCC-chHHHHHHHhhc
Q psy7164 782 ---------------KSHPRPIAPKSYKIDDDSEEEEIEE----VFH------D-NELAKP--QKTG-PQLERQERQAAE 832 (2307)
Q Consensus 782 ---------------~~sl~eIL~eF~~~Rl~~y~rr~e~----l~n------i-~~li~~--~~~d-~~~a~~~~~~~~ 832 (2307)
.+++.+||+...++...+++.+++. |.. + .-||+. |... ............
T Consensus 291 s~~~n~~~i~~~~P~~~~l~~il~~~~~~~~~~l~~eLe~~~~~l~~~~~~~sle~ifie~riy~~~~~~~~~~e~~~~~ 370 (479)
T PRK09630 291 ILTSRPTAIYQNKPVETSISEILRLHTETLQGYLKKELLILEDSLSREHYHKTLEYIFIKHKLYDTVREMLSKRKTSPSS 370 (479)
T ss_pred hccceEEEEECCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCH
Confidence 2999999999888888888876665 111 1 112222 1110 000000000000
Q ss_pred -cccccccccCC----CC--CCChhhHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHcc
Q psy7164 833 -GEDDEAGSQTQ----EE--EDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKK 888 (2307)
Q Consensus 833 -~~~~~~~~~~~----~~--~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~el~~ei~~L~~~ 888 (2307)
....+...... .+ +.++.|...|+++|+.|+++.+++|-++++..+++++++.++.
T Consensus 371 ~~~~~~i~~~l~p~~~~~~r~v~~~d~~~l~~i~i~ri~~fd~~k~~~~~~~~~~~~~~~~~~ 433 (479)
T PRK09630 371 SDLHNAVLEALTPFLDTLPTPVDKQATAQLASLTIKKILCFNENSYTKELACIEKKQAAVQKD 433 (479)
T ss_pred HHHHHHHHHhcCcchhhccCCCCHHHHHHHhhhhHHHhhhcCHHhHHHHHHHHHHHHHHHHHH
Confidence 00000000111 11 5789999999999999999999999999999999999998875
No 54
>PF00817 IMS: impB/mucB/samB family; InterPro: IPR001126 In Escherichia coli, UV and many chemicals appear to cause mutagenesis by a process of translesion synthesis that requires DNA polymerase III and the SOS-regulated proteins UmuD, UmuC and RecA. This machinery allows the replication to continue through DNA lesion, and therefore avoid lethal interruption of DNA replication after DNA damage []. UmuC is a well conserved protein in prokaryotes, with a homologue in yeast species. Proteins currently known to belong to this family are listed below: E. coli MucB protein. Plasmid-born analogue of the UmuC protein. Saccharomyces cerevisiae (Baker's yeast) Rev1 protein. Homologue of UmuC also required for normal induction of mutations by physical and chemical agents. Salmonella typhimurium ImpB protein. Plasmid-born analogue of the UmuC protein. Bacterial UmuC protein. E. coli DNA-damage-inducible protein P (DinP). S. typhimurium SamB homologue of UmuC plasmid associated. ; GO: 0003684 damaged DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006281 DNA repair; PDB: 3BJY_A 2AQ4_A 3OSP_A 4DL7_A 4DL6_A 3TQ1_A 3MR2_A 4EEY_A 3MR3_A 4DL4_A ....
Probab=99.96 E-value=2.6e-30 Score=282.49 Aligned_cols=149 Identities=40% Similarity=0.579 Sum_probs=130.0
Q ss_pred EeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHHHHHHhCCC
Q psy7164 1619 IDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPN 1698 (2307)
Q Consensus 1619 vDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~~A~kLCPd 1698 (2307)
|||||||||||++.+|+|+++||||+++.++. ++|++|||+||++||++||++.+|+++||+
T Consensus 1 iD~~~F~as~e~~~~p~L~~~PvaV~~~~~~~------------------~~V~a~n~~Ar~~GV~~Gm~~~~A~~lcp~ 62 (149)
T PF00817_consen 1 IDMDAFFASVERRRDPELRGRPVAVVSGQGNR------------------GRVIAANYEARAAGVRPGMPLAEALALCPD 62 (149)
T ss_dssp EEETTHHHHHHHHHSGGGTTSSEEEEECTSST------------------CEEEEE-HHHHTTTSTTTSBHHHHHHHSTT
T ss_pred CccccHHHHHHhhhCccccCCCEEEEeccccc------------------chhhhhHHHHHhhccccchhhhhHhhhccc
Confidence 79999999999999999999999999975431 357899999999999999999999999999
Q ss_pred cEEecCChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCcccchhhhcc
Q psy7164 1699 LKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICA 1778 (2307)
Q Consensus 1699 L~ivpydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~~~~~~~~ 1778 (2307)
|+++++|++.|+++|++|++++.+|+
T Consensus 63 l~~~~~d~~~~~~~~~~l~~~l~~~~------------------------------------------------------ 88 (149)
T PF00817_consen 63 LVVVPPDPERYREASERLAEILYRFS------------------------------------------------------ 88 (149)
T ss_dssp SEEEEEEHHHHHHHHHHHHHHHHTTT------------------------------------------------------
T ss_pred eeeccccHHHHHHHHHHHHHHHHhcc------------------------------------------------------
Confidence 99999999999999999998887762
Q ss_pred cccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhcccchHHHHH
Q psy7164 1779 DSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLNPIVILL 1858 (2307)
Q Consensus 1779 ~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 1858 (2307)
T Consensus 89 -------------------------------------------------------------------------------- 88 (149)
T PF00817_consen 89 -------------------------------------------------------------------------------- 88 (149)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchhccCCCHHHHHHHHHHHHHHHhC
Q psy7164 1859 RFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETG 1938 (2307)
Q Consensus 1859 ~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~~~~~~~~~lA~~IR~~I~~~TG 1938 (2307)
+|.++.+|+||+|+|++++.++++ +...++++||++|.+++|
T Consensus 89 -------------------------------------sp~ve~~s~de~~ldv~~~~~l~~-~~~~~~~~l~~~i~~~~g 130 (149)
T PF00817_consen 89 -------------------------------------SPRVEVYSPDELFLDVTGSLRLFG-GEEALARRLRQAIAEETG 130 (149)
T ss_dssp -------------------------------------CSEEEEEETTEEEEEEHHHHHHHH-HHHHHHHHHHHHHHHHHS
T ss_pred -------------------------------------cccceecccccccccCCcchhhcc-hHHHHHHHHHHHHHHHhC
Confidence 234556778888888888877776 668999999999999999
Q ss_pred CeEEEEecCCHHHHHHHhh
Q psy7164 1939 CTCSTGFGSNKLQARLATK 1957 (2307)
Q Consensus 1939 ~tvSVGIA~NklLAKLASr 1957 (2307)
++||+|||+|+++||||++
T Consensus 131 l~~s~Gia~~~~~Aklaa~ 149 (149)
T PF00817_consen 131 LTASIGIAPNPLLAKLAAD 149 (149)
T ss_dssp --EEEEEESSHHHHHHHHH
T ss_pred CEEEEEEeCCHHHHHHhcC
Confidence 9999999999999999984
No 55
>cd03481 TopoIIA_Trans_ScTopoIIA TopoIIA_Trans_ScTopoIIA: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topo IIA. S. cerevisiae Topo IIA is a homodimer encoded by a single gene. The type IIA enzymes are the predominant form of topoisomerase and are found in some bacteriophages, viruses and archaea, and in all bacteria and eukaryotes. All type IIA topoisomerases are related to each other at amino acid sequence level, though their oligomeric organization sometimes differs. TopoIIA enzymes cut both strands of the duplex DNA to remove (relax) both positive and negative supercoils in DNA. These enzymes covalently attach to the 5' ends of the cut DNA, separate the free ends of the cleaved strands, pass another region of the duplex through this gap, then rejoin the ends. TopoIIA enzymes also catenate/ decatenate duplex rings. This transducer domain is homologous to t
Probab=99.91 E-value=3.6e-24 Score=234.14 Aligned_cols=127 Identities=69% Similarity=1.104 Sum_probs=107.2
Q ss_pred cchHHHHHHHhccC-CCCCCCeEEEEEecCCeeEEEEeecCCCceEEEeeCCccCCCCcchhhHHHHHHHHHHHHHHHHh
Q psy7164 293 KNFQDYVKLYTDRQ-DEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK 371 (2307)
Q Consensus 293 ~G~~dYV~~~~~~~-~~~~~~~~ii~e~~~~~~EVAl~~s~~~y~~~SFVNnI~T~eGGTHvdgfr~aLtr~i~~~~kkk 371 (2307)
++|++|+++|.... +..+.+..++++..+++|||||+|++..++++||||+|+|.+||||++||+++|+++|++|++++
T Consensus 1 ~~f~~Y~~ly~~~~~~~~~~~~~~~~~~~~~~veva~~~s~~~~~~~SFvN~I~T~~GGTHv~g~~~~lt~~i~~~~~kk 80 (153)
T cd03481 1 KSFKDYVKLYLKDANKEDGPPPPVVYEPVNDRWEVAVALSDGQFQQVSFVNSIATTKGGTHVDYVADQIVKKLDEVVKKK 80 (153)
T ss_pred CCHHHHHHHHhcccccccCCCCCeEeccCCCcEEEEEEEcCCCcEEEEEECCcCCCCCCchHHHHHHHHHHHHHHHHHHc
Confidence 37999999997321 11122334677877889999999998667889999999999999999999999999999999876
Q ss_pred ccccccceeeccccccccccchhhhhcccccccccccccccCChHhHhcceEEEEEeecCCCcccchhhhhhhccccccc
Q psy7164 372 NKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFG 451 (2307)
Q Consensus 372 ~k~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~dvreg~~~vk~~dIre~L~~~Vsvki~nP~FegQTKekL~~~~~~~~ 451 (2307)
++ +...++++|||++|++||+|+++||+|+||||++|++....|+
T Consensus 81 ~k-----------------------------------~~~~i~~~dire~l~~vvs~~i~~P~FegQTK~kL~s~~~~~~ 125 (153)
T cd03481 81 NK-----------------------------------GGINVKPFQVKNHLWIFVNCLIENPSFDSQTKETLTTKPKSFG 125 (153)
T ss_pred CC-----------------------------------CCCCcCHHHHhcCeEEEEEEecCCCccCCcccccccCcccccc
Confidence 54 0135788999999999999999999999999999999888888
Q ss_pred ccc
Q psy7164 452 STC 454 (2307)
Q Consensus 452 ~k~ 454 (2307)
+++
T Consensus 126 ~~~ 128 (153)
T cd03481 126 SKC 128 (153)
T ss_pred ccc
Confidence 875
No 56
>PF00204 DNA_gyraseB: DNA gyrase B; InterPro: IPR013506 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions, domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents the second domain found in subunit B (gyrB and parE) of bacterial gyrase and topoisomerase IV, and the equivalent N-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 3LPS_A 3LNU_A 1KIJ_B 1EI1_B 1S16_B 1QZR_B 1PVG_A 3CWV_B 1ZXN_A 1ZXM_B ....
Probab=99.86 E-value=6.8e-22 Score=221.69 Aligned_cols=120 Identities=37% Similarity=0.492 Sum_probs=94.6
Q ss_pred chHHHHHHHhcc-CCCCCCCeEEEEEe--cC-CeeEEEEeecC-CCceEEEeeCCccCCCCcchhhHHHHHHHHHHHHHH
Q psy7164 294 NFQDYVKLYTDR-QDEDGDPVKIIYEN--VN-PRWEVAIAPSD-RGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVV 368 (2307)
Q Consensus 294 G~~dYV~~~~~~-~~~~~~~~~ii~e~--~~-~~~EVAl~~s~-~~y~~~SFVNnI~T~eGGTHvdgfr~aLtr~i~~~~ 368 (2307)
||+|||+++... ...+.+++++..+. .+ ..+|||++|++ .+..++||||+|+|++||||++||+++|+++|++|+
T Consensus 1 G~~dyv~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~va~~~~~~~~~~~~SfvN~i~T~~GGtHv~g~~~~i~~~i~~~~ 80 (173)
T PF00204_consen 1 GFKDYVKLLNKDKEPLHPEPIYFEGEDKENDRWEVEVAFQWTSGYDEKIVSFVNNIPTPEGGTHVDGFKDAITKAINDYA 80 (173)
T ss_dssp SHHHHHHHHCTTS-BSSSSEEEEEEEEE-TTTEEEEEEEEEBSSSSCEEEEEETTEE-TTEBHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCcCCCCCeEEEEEeccCCcEEEEEEEEecCCCceeeeeeeccccccccccHHHHHHHHHHHHHHHhH
Confidence 899999999843 34445555555444 33 67899999985 233679999999999999999999999999999999
Q ss_pred HHhccccccceeeccccccccccchhhhhcccccccccccccccCChHhHhcceEEEEEeecCCCcccchhhhhhhcc
Q psy7164 369 KKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQ 446 (2307)
Q Consensus 369 kkk~k~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~dvreg~~~vk~~dIre~L~~~Vsvki~nP~FegQTKekL~~~ 446 (2307)
+++++ +++ +..++++||++||++||+|+|+||+|+||||++|++.
T Consensus 81 ~k~~~----------------~k~-----------------~~~i~~~di~~~l~~vv~~~i~nP~F~gQTK~~L~~~ 125 (173)
T PF00204_consen 81 KKKNK----------------LKK-----------------KDKITPEDIREGLTAVVSVKIPNPQFEGQTKEKLTNP 125 (173)
T ss_dssp HHTTC----------------CCT-----------------TTGSSHHHHHTTEEEEEEEEESSG-BSSTTTTSB--H
T ss_pred hhhCc----------------ccc-----------------ccccchhhcccccEEEEEEEEecccccccccceeeHH
Confidence 98875 111 2368899999999999999999999999999999864
No 57
>cd00822 TopoII_Trans_DNA_gyrase TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E. coli DNA gyrase and E. coli Topoisomerase IV which are heterodimers composed of two subunits. The type IIA enzymes are the predominant form of topoisomerase and are found in some bacteriophages, viruses and archaea, and in all bacteria and eukaryotes. All type IIA topoisomerases are related to each other at amino acid sequence level, though their oligomeric organization sometimes differs. TopoIIA enzymes cut both strands of the duplex DNA to remove (relax) both positive and negative supercoils in DNA. These enzymes covalently attach to the 5' ends of the cut DNA, separate the free ends of the cleaved strands, pass another region of the duplex through this gap, then rejoin the ends. TopoIIA enzymes also catenate/ decatenate duplex rings. E.coli DNA gyrase is a
Probab=99.86 E-value=1.7e-21 Score=217.98 Aligned_cols=120 Identities=26% Similarity=0.407 Sum_probs=99.4
Q ss_pred cchHHHHHHHhc-cCCCCCCCeEEEEEecCCeeEEEEeecCCCc--eEEEeeCCccCCCCcchhhHHHHHHHHHHHHHHH
Q psy7164 293 KNFQDYVKLYTD-RQDEDGDPVKIIYENVNPRWEVAIAPSDRGF--QQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVK 369 (2307)
Q Consensus 293 ~G~~dYV~~~~~-~~~~~~~~~~ii~e~~~~~~EVAl~~s~~~y--~~~SFVNnI~T~eGGTHvdgfr~aLtr~i~~~~k 369 (2307)
+|+.+||++++. +...+.+++++..+.++..|||||+|++ +| +.+||||+|+|.+||||++||+++|+++|+.|++
T Consensus 1 gGl~~fl~~l~~~~~~l~~~~i~~~~~~~~~~veva~~~~~-~~~~~~~sfvN~i~T~~GGTH~~g~~~~l~~~i~~~~~ 79 (172)
T cd00822 1 GGLKDFVEELNKDKEPLHEEPIYIEGEKDGVEVEVALQWTD-SYSENILSFVNNIPTPEGGTHETGFRAALTRAINDYAK 79 (172)
T ss_pred CCHHHHHHHHhCCCCcCCCCCeEEEEEecceEEEEEEEEeC-CCCeEEEEeECcccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 489999999883 3334445665545556789999999997 55 4699999999999999999999999999999998
Q ss_pred HhccccccceeeccccccccccchhhhhcccccccccccccccCChHhHhcceEEEEEeecCCCcccchhhhhhhc
Q psy7164 370 KKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTL 445 (2307)
Q Consensus 370 kk~k~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~dvreg~~~vk~~dIre~L~~~Vsvki~nP~FegQTKekL~~ 445 (2307)
+++. +|+. ...++++||+++|++||+|+++||+|+||||++|++
T Consensus 80 ~~~~----------------~k~~----------------~~~~~~~di~~~l~~vvsv~~~~P~F~gQTK~kL~~ 123 (172)
T cd00822 80 KNNL----------------LKKK----------------DVKLTGDDIREGLTAVISVKVPEPQFEGQTKDKLGN 123 (172)
T ss_pred HhCc----------------cccc----------------CCCCCHHHHHhCcEEEEEEEcCCCccCCcccccccC
Confidence 8764 1211 145788999999999999999999999999999986
No 58
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.64 E-value=2e-16 Score=190.77 Aligned_cols=191 Identities=17% Similarity=0.242 Sum_probs=149.2
Q ss_pred hhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeEEEEEE
Q psy7164 34 KIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVN 113 (2307)
Q Consensus 34 ~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~ 113 (2307)
+.|+.++..|..+|++.| +|-.++ +++|+++|.|+++||+|.+..+|..+.|+|.|.
T Consensus 10 e~~re~SvAEFF~kNk~m-lGf~~p----------------------~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~ 66 (538)
T COG1389 10 EKFRELSVAEFFRKNKEM-LGFDGP----------------------IRSLTTTVHELVTNSLDACEEAGILPDIKVEIE 66 (538)
T ss_pred hhhhhcCHHHHHHhCHHh-cCCCCc----------------------hhHHHHHHHHHHhcchhhHHhcCCCCceEEEEE
Confidence 458999999999999999 888876 689999999999999999999999999999998
Q ss_pred ccC-C--eEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCccccccCC
Q psy7164 114 QET-N--TISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGR 190 (2307)
Q Consensus 114 ~d~-g--sIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGl 190 (2307)
..+ + .|.|+|||.|||....|+ |||.+++| +||+ ..++|.|+
T Consensus 67 ~~~~d~y~v~veDNGpGIP~e~IPk--------vFGk~Lyg-------------------------SKfh--~~~QsRGq 111 (538)
T COG1389 67 RIGKDHYKVIVEDNGPGIPEEQIPK--------VFGKMLYG-------------------------SKFH--RNIQSRGQ 111 (538)
T ss_pred ecCCceEEEEEecCCCCCChhHhHH--------HHHHHhcc-------------------------chhh--hhhhcccc
Confidence 752 2 788999999999886665 88888888 8887 55899999
Q ss_pred Cccccccccccccee-----EEEEEeecccEEEEEEeecCCCcCCCccccC-----CCCCCCcEEEEEeCcccccccccC
Q psy7164 191 NGYGAKLCNIFSSKF-----VVETSCSEYKKSFKQVWKDNMSKVTSPEIKS-----GSKDDFTKITFTPDLTKFKMTSLD 260 (2307)
Q Consensus 191 hGVGasvvNAlS~~f-----~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~-----~~~~~GT~VtF~PD~~iF~~~~f~ 260 (2307)
.|+|+|.|.+||+.. +|.+....++..|.....-+...+++.++.. ..+.+||+|... |+...+.
T Consensus 112 qGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT~Vel~-----~~~~~~~ 186 (538)
T COG1389 112 QGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHGTRVELE-----LKGVWYR 186 (538)
T ss_pred ccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCceEEEEE-----ecccchh
Confidence 999999999999996 4555444446777777766665555443332 134699999987 3322221
Q ss_pred HHHHHHHHHHHHHhhccCCCcEEEeccc
Q psy7164 261 KDMVDLITRRAYDAAASTKDVKVFLNGE 288 (2307)
Q Consensus 261 ~d~l~~l~~Rl~dlA~LnpGLkI~lnde 288 (2307)
... .-++.+++.+|..||..+|.|+|=
T Consensus 187 ~~~-qgi~eYlkrtaiinPhA~I~l~dP 213 (538)
T COG1389 187 AKR-QGIYEYLKRTAIINPHARIVLKDP 213 (538)
T ss_pred hcc-cCHHHHHHHHhhcCCceEEEEECC
Confidence 111 013467778999999999999753
No 59
>KOG2093|consensus
Probab=99.56 E-value=2.4e-16 Score=199.76 Aligned_cols=237 Identities=25% Similarity=0.392 Sum_probs=136.9
Q ss_pred CCCCccceEEEEeeeeccccccccccCCCCHHHHH-HHHHHcCCEEEEeccC--CccEEEeCCCChhhHhhcCCCCceec
Q psy7164 1342 RGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELK-ALMMLHGGIYHHYESS--RTTHIIASNLPHTKIKKLKPGDKIIK 1418 (2307)
Q Consensus 1342 ~~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~-~li~~hGG~~~~~l~~--~vTHIIas~l~~~K~~~~k~~~kIVk 1418 (2307)
.+.||..++||||||+. |-..+|+ -.++.|++...++.+. .|+|.++.++...|. +. ++..++
T Consensus 158 ~~ki~~~n~ikinG~~E-----------~~~~dlepp~gv~~d~~~~~~~~~rd~v~~~l~~~~l~n~~--f~-n~~~~s 223 (1016)
T KOG2093|consen 158 SSKIFKNNVIKINGYNE-----------PESLDLEPPSGVLHDKAEDDSTSARDHVDHELAGNLLLNKR--FV-NIENTS 223 (1016)
T ss_pred chhccccceeeecCCCC-----------ccccccCCCcccccchhhhhhhhHHHHHHHHhccccccccc--cc-eeeecC
Confidence 45799999999999996 5444555 5555688888888874 489999998666655 43 799999
Q ss_pred cChHHHHHHhCCCCCCcCce---eeecCCCchhhHHhhhcccccCCCCcc--cccccccC-CCCcccCCCCCCcccchhh
Q psy7164 1419 PEWIVDSISAGKLLDHKKYL---LYTGTDAKPLTKLLQKSYFENTEAPCC--SKSLVETS-SHTSTVSDSVDNTEESKSE 1492 (2307)
Q Consensus 1419 peWI~DSI~~gklLp~~~Y~---l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 1492 (2307)
|.||+|.+.--...+|+.|. ..++.+..... .. + -+.| .+.+-.++ -|... +
T Consensus 224 P~~~~~k~~~a~~~~~~~~Ss~~~TS~~~~~s~a--~~-----~--~~~~nfis~~~~ts~LH~~S--~----------- 281 (1016)
T KOG2093|consen 224 PDWIVDKELTAHTGTGQNYSSEMNTSGLSTYSIA--AD-----N--KPTVNFISEFYSTSRLHKGS--D----------- 281 (1016)
T ss_pred chhhhhhhhhhccCCcccccccccccccchhhhh--cc-----c--Ccccccccchhhhhhhhhcc--h-----------
Confidence 99999999999999999996 32222111100 00 0 0000 00000000 00000 0
Q ss_pred hccccccccccCCCcccccccccccccccccccCCCCCCCCCCCCCCCCChHHHHhhcChhHHHHhhchHHHHHHHHHHH
Q psy7164 1493 AVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELRE 1572 (2307)
Q Consensus 1493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Fl~~fy~~SRLHhlstwk~~~k~~~~~l~~ 1572 (2307)
-+.....+....+. . ....+.-..+...+.+|||+.+||++|||||||||++++|.|+-.+--
T Consensus 282 ------~k~~~~~~v~~~~r------~-----~~gnn~~~kR~~~~d~~nf~~ny~a~sRlh~is~~~~dmk~fF~nv~l 344 (1016)
T KOG2093|consen 282 ------NKGVHAQFVNGLKR------Q-----ANGNNSFTKRESLKDDPNFVENYFANSRLHFISTWHNDMKDFFVNVGL 344 (1016)
T ss_pred ------hhhhHHhhhhcccc------c-----cCCCCcccchhhhhcCccHHHHHhcchhhhHHHHHHHhhhhhhhcccc
Confidence 00000011100000 0 000001112233467899999999999999999999999877644211
Q ss_pred hcCCCchhHHHHHHhhhccCcCCcccccccccCCCCCCCCCCEEEEEeCCcchhhhhhhcCCCCCCCcEEEEeC
Q psy7164 1573 KHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHG 1646 (2307)
Q Consensus 1573 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~r~I~HvDmD~FFasVe~~~~PeL~~kPVaV~~~ 1646 (2307)
+...+++. +..-...|- ....+ .......+|+++||||++|+.+.+++++++|+|||||
T Consensus 345 ------~~k~~~kg----~~~a~~~d~-~ti~~----i~~~~~~~~v~~dcf~~sv~~~n~~D~k~kpvav~hg 403 (1016)
T KOG2093|consen 345 ------RLKPALKG----QPTAETADK-GTIIH----IDRPFASVKVELDCFFVSVVIKNRLDLKDKPVAVCHG 403 (1016)
T ss_pred ------cCCccccC----Cceeeeccc-ccccc----cccccchhHHHHHHhhhhheeccccccccCcceeecc
Confidence 11111110 000000000 00000 1223566788899999999999999999999999993
No 60
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.53 E-value=6.1e-14 Score=184.83 Aligned_cols=220 Identities=19% Similarity=0.173 Sum_probs=148.4
Q ss_pred cchhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcc
Q psy7164 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEE 158 (2307)
Q Consensus 81 ~pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~ 158 (2307)
+..+..+++|+|+||+| +| ++.|.|.|+. +| +|+|.|||+|||.+..+ ++|+ .|+++|+..-+
T Consensus 20 I~~~~svvkElveNsiD----Ag-at~I~v~i~~-~g~~~i~V~DnG~Gi~~~~~~--------~~~~-~~~tsKi~~~~ 84 (617)
T PRK00095 20 VERPASVVKELVENALD----AG-ATRIDIEIEE-GGLKLIRVRDNGCGISKEDLA--------LALA-RHATSKIASLD 84 (617)
T ss_pred ccCHHHHHHHHHHHHHh----CC-CCEEEEEEEe-CCeEEEEEEEcCCCCCHHHHH--------HHhh-ccCCCCCCChh
Confidence 56788999999999999 45 7899999975 56 89999999999997532 3343 45553333222
Q ss_pred cccccccccccccccccccCCCCCccc-cccCCCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCC
Q psy7164 159 DKVTGVVPTMIFGHLLTSSNYNDEEDK-VTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSG 237 (2307)
Q Consensus 159 ~~~~~~~~~~~~~~~~~g~nfd~~~yk-~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~ 237 (2307)
| -+. .|.|.+|.|++.++++| +++|++.....+..|++.|.+|.... +...
T Consensus 85 d-----------------------l~~~~t~GfrGeAL~sI~~vs-~l~i~s~~~~~~~~~~~~~~~G~~~~----~~~~ 136 (617)
T PRK00095 85 D-----------------------LEAIRTLGFRGEALPSIASVS-RLTLTSRTADAAEGWQIVYEGGEIVE----VKPA 136 (617)
T ss_pred H-----------------------hhccccCCcchhHHHhhhhce-EEEEEEecCCCCceEEEEecCCcCcc----eecc
Confidence 1 223 67899999999999998 68998876445778999999884321 2222
Q ss_pred CCCCCcEEEEE------eCcccccc-cccCHHHHHHHHHHHHHhhccCCCcEEEeccccC---C---ccchHHHHHHHhc
Q psy7164 238 SKDDFTKITFT------PDLTKFKM-TSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKL---P---VKNFQDYVKLYTD 304 (2307)
Q Consensus 238 ~~~~GT~VtF~------PD~~iF~~-~~f~~d~l~~l~~Rl~dlA~LnpGLkI~lnder~---~---~~G~~dYV~~~~~ 304 (2307)
...+||+|+|+ |+..+|-. .... +..|..+++.+|++|||+.+.|.++.. . ..++.+++..+.+
T Consensus 137 ~~~~GT~V~v~~LF~n~P~Rrkflk~~~~e---~~~i~~~v~~~Al~~p~i~f~l~~~~~~~~~~~~~~~~~~~i~~i~g 213 (617)
T PRK00095 137 AHPVGTTIEVRDLFFNTPARRKFLKSEKTE---LGHIDDVVNRLALAHPDVAFTLTHNGKLVLQTRGAGQLLQRLAAILG 213 (617)
T ss_pred cCCCCCEEEechhhccCcHHHHhccCcHHH---HHHHHHHHHHHhhcCCCcEEEEEECCEEEEEeCCCCCHHHHHHHHhC
Confidence 34799999996 99998842 2222 334668999999999999999976642 1 1468888877653
Q ss_pred cCCCCCCCeEEEEEecCCeeE--EEE-eecC-CCceEEEeeCCccCC
Q psy7164 305 RQDEDGDPVKIIYENVNPRWE--VAI-APSD-RGFQQVSFVNSIATT 347 (2307)
Q Consensus 305 ~~~~~~~~~~ii~e~~~~~~E--VAl-~~s~-~~y~~~SFVNnI~T~ 347 (2307)
.... ...+.+..+..+..++ |+. .++. ....++.|||+.++.
T Consensus 214 ~~~~-~~l~~~~~~~~~~~i~g~is~p~~~~~~~~~~~~fvN~R~v~ 259 (617)
T PRK00095 214 REFA-ENALPIDAEHGDLRLSGYVGLPTLSRANRDYQYLFVNGRYVR 259 (617)
T ss_pred HHhH-hheEEEeccCCCEEEEEEEeCcccccCCCcceEEEECCcEec
Confidence 2211 1222232232333444 222 2222 112368999999876
No 61
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.49 E-value=1.3e-13 Score=174.33 Aligned_cols=190 Identities=18% Similarity=0.233 Sum_probs=138.0
Q ss_pred hhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeEEEEEE
Q psy7164 34 KIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVN 113 (2307)
Q Consensus 34 ~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~ 113 (2307)
++++.++..|..++++.| .|-.++ ..+|++++.|+|+||+|.....+..+.|.|.+.
T Consensus 2 ~~~~~~s~aEFF~kN~~~-~Gf~~~----------------------~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~ 58 (488)
T TIGR01052 2 EKFREMSVAEFFRKNKHM-LGYSGK----------------------IRSLTTVIHELVTNSLDACEEAGILPDIKVEIE 58 (488)
T ss_pred CcccccCHHHHHHhCCcc-ccccCC----------------------HHHHHHHHHHHHHHHHHHhhccCCCceEEEEEE
Confidence 456788999999999999 787764 478999999999999998755566678999887
Q ss_pred ccC-C--eEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCccccccCC
Q psy7164 114 QET-N--TISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGR 190 (2307)
Q Consensus 114 ~d~-g--sIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGl 190 (2307)
..+ + .|+|.|||.|||.+..+. +|+.+|++ +||... ..+.|.
T Consensus 59 ~~g~~~~~I~V~DNG~GIp~edl~~--------iF~rf~~t-------------------------sK~~~~--~~s~G~ 103 (488)
T TIGR01052 59 KIGKDHYKVTVEDNGPGIPEEYIPK--------VFGKMLAG-------------------------SKFHRI--IQSRGQ 103 (488)
T ss_pred ECCCceEEEEEEECCCCCCHHHHHh--------hhhhcccc-------------------------Cccccc--cccCCC
Confidence 532 2 799999999999886543 77777777 676532 567899
Q ss_pred Ccccccccccccce-----eEEEEEeecccEEEEEEee------cCCCcCCCccccCCCCCCCcEEEEEeCccccccccc
Q psy7164 191 NGYGAKLCNIFSSK-----FVVETSCSEYKKSFKQVWK------DNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSL 259 (2307)
Q Consensus 191 hGVGasvvNAlS~~-----f~Vev~~~~~gk~y~q~f~------~g~~~~~~~~i~~~~~~~GT~VtF~PD~~iF~~~~f 259 (2307)
+|+|+++++++|+. ++|++........|++.+. .|.. .....+. ...++||+|++.+|..... +
T Consensus 104 ~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n~G~i-~~~~~~~-~~~~~GT~V~v~f~~~~~r---~ 178 (488)
T TIGR01052 104 QGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKNEGEI-VEKGEWN-KPGWRGTRIELEFKGVSYR---R 178 (488)
T ss_pred ccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEecccccCCee-cceeecC-CCCCCceEEEEEECCceee---c
Confidence 99999999999997 7787764222223467764 2321 1111111 2235899999996654321 1
Q ss_pred CHHHHHHHHHHHHHhhccCCCcEEEecccc
Q psy7164 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEK 289 (2307)
Q Consensus 260 ~~d~l~~l~~Rl~dlA~LnpGLkI~lnder 289 (2307)
... .+..+++.+|++||+++|.|.+..
T Consensus 179 ~k~---~i~e~l~~~Al~nP~~~i~l~~~~ 205 (488)
T TIGR01052 179 SKQ---GVYEYLRRTAVANPHAKIVLVDPD 205 (488)
T ss_pred cHH---HHHHHHHHHHhhCCCeEEEEEeCC
Confidence 223 345899999999999999998753
No 62
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.36 E-value=2.7e-12 Score=164.04 Aligned_cols=189 Identities=19% Similarity=0.248 Sum_probs=134.3
Q ss_pred hhhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeEEEEE
Q psy7164 33 EKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITV 112 (2307)
Q Consensus 33 ~~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I~V~i 112 (2307)
.++++.++..|..++++.| .|-.++ .++|++++.|+|+||+|.....|....|.|.+
T Consensus 9 ~~~~~~~s~aEfF~kn~~~-~gf~~p----------------------~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I 65 (535)
T PRK04184 9 KEKFREISVAEFFEKNKEL-LGFDNP----------------------ARALYTTVKELVDNSLDACEEAGILPDIKIEI 65 (535)
T ss_pred HhhhhhCCHHHHHHhCccc-eeecCC----------------------HHHHHHHHHHHHHHHHHHhhhcCCCceEEEEE
Confidence 3458999999999999999 554443 36899999999999999875556666788888
Q ss_pred Ecc---C--CeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCccccc
Q psy7164 113 NQE---T--NTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVT 187 (2307)
Q Consensus 113 ~~d---~--gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~s 187 (2307)
... + ..|+|.|||.|||.+..+ .+|+.++++ ++|... ..+
T Consensus 66 ~~~~~~~~~~~I~V~DNG~GIp~e~l~--------~iF~~f~~~-------------------------SK~~~~--~~s 110 (535)
T PRK04184 66 KRVDEGKDHYRVTVEDNGPGIPPEEIP--------KVFGKLLYG-------------------------SKFHNL--RQS 110 (535)
T ss_pred EEccCCCcEEEEEEEcCCCCCCHHHHH--------HHhhhhhcc-------------------------cccccc--ccC
Confidence 742 2 268999999999987654 266666555 666432 356
Q ss_pred cCCCcccccccccccce-----eEEEEEeecccE-EEEEEeecCCCcCCCccc----cCCCCCCCcEEEEEeCccccccc
Q psy7164 188 GGRNGYGAKLCNIFSSK-----FVVETSCSEYKK-SFKQVWKDNMSKVTSPEI----KSGSKDDFTKITFTPDLTKFKMT 257 (2307)
Q Consensus 188 gGlhGVGasvvNAlS~~-----f~Vev~~~~~gk-~y~q~f~~g~~~~~~~~i----~~~~~~~GT~VtF~PD~~iF~~~ 257 (2307)
.|.+|+|+++|+.+|+. +.|++... .+. .|...+.-......+..+ ......+||+|++.++..++..
T Consensus 111 ~G~~GLGLsiv~~isq~~~G~~I~V~S~~~-~g~~~~~~~l~id~~kn~g~i~~~~~~~~~~~~GT~V~V~l~~~~~~~- 188 (535)
T PRK04184 111 RGQQGIGISAAVLYAQMTTGKPVRVISSTG-GSKKAYYFELKIDTKKNEPIILEREEVDWDRWHGTRVELEIEGDWYRA- 188 (535)
T ss_pred CCCCCcchHHHHHHHHHhcCCcEEEEEecC-CCceEEEEEEEecccccCCeeccccccCCCCCCCEEEEEEECCcChhh-
Confidence 78899999999999986 45666432 233 677777422211111111 1123578999999977766521
Q ss_pred ccCHHHHHHHHHHHHHhhccCCCcEEEecc
Q psy7164 258 SLDKDMVDLITRRAYDAAASTKDVKVFLNG 287 (2307)
Q Consensus 258 ~f~~d~l~~l~~Rl~dlA~LnpGLkI~lnd 287 (2307)
...+..+++.+|.+||+++|.|.+
T Consensus 189 ------~~~I~e~i~r~Al~nP~~~~~l~~ 212 (535)
T PRK04184 189 ------KQRIYEYLKRTAIVNPHARITFKD 212 (535)
T ss_pred ------HHHHHHHHHHHHHhCCCeEEEEEe
Confidence 334568899999999999999873
No 63
>KOG0966|consensus
Probab=99.22 E-value=6.3e-12 Score=159.97 Aligned_cols=157 Identities=20% Similarity=0.277 Sum_probs=128.3
Q ss_pred cccchHHHHhhhccCCCccchhhhhhccC-CCCCCCCCCCCCCCCCcchhHHHHHHHHHHH-HHhhhcCCCCCCCccceE
Q psy7164 1273 VFRGIEAIRKWKTSLGITEDEDLEETFSD-NPSPSEPKTTAPKKKKKGGYMEAKKRKLEEQ-FELEANSDSRGGIFQGVA 1350 (2307)
Q Consensus 1273 ~~~g~e~lrk~k~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~y~~~K~~kL~~q-~~~~~~~~~~~~IF~G~~ 1350 (2307)
.||=-+++|.+|.|++|+|+.|+.+.... ...++ .+.++...+.-++++.+++.-+ +-......+.+++|.|+.
T Consensus 563 rfPr~ekvR~DK~W~ec~tl~~l~~l~~~~~~d~~----~~~kk~~~t~~~~k~~~~~i~~~~~~~~~~~~~s~if~gl~ 638 (881)
T KOG0966|consen 563 RFPRIEKVRLDKPWHECLTLNELGDLVNVSKSDVE----DKEKKKRDTLKVRKRTRKAIHDSAPNRSKVAKISNIFDGLE 638 (881)
T ss_pred ecceeeeeecCCcHHHHhhHHHHHHHhccccCCcc----hhhhhcccchhhhhhhhhhhcccccchhcccchhhhhcCee
Confidence 48999999999999999999999999974 33343 5566666667777777776543 333334556789999999
Q ss_pred EEE-eeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEe---CCCChhhHhhcCCCCceeccChHHHHH
Q psy7164 1351 IFV-NGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIA---SNLPHTKIKKLKPGDKIIKPEWIVDSI 1426 (2307)
Q Consensus 1351 iyV-nGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIa---s~l~~~K~~~~k~~~kIVkpeWI~DSI 1426 (2307)
||| .|+.. .++..+|.++|+.|||.+++++....||-|+ +.-+..|...+++.+.||+|+|++||+
T Consensus 639 f~Vlsgt~~----------~~tk~~le~~ivenGG~iv~nv~p~~~~ci~~a~~et~~vk~~~~~~~cdVl~p~Wlldcc 708 (881)
T KOG0966|consen 639 FCVLSGTSE----------THTKAKLEEIIVENGGKIVQNVGPSDTLCIATAGKETTRVKAQAIKRSCDVLKPAWLLDCC 708 (881)
T ss_pred EEEecCCcc----------cccHHHHHHHHHHcCCEEEEcCCCCCcceEEeccccchHHHHHHHhccCceeeHHHHHHHH
Confidence 999 88864 2778999999999999999999987888874 345678888888899999999999999
Q ss_pred HhCCCCCCcCceeeecC
Q psy7164 1427 SAGKLLDHKKYLLYTGT 1443 (2307)
Q Consensus 1427 ~~gklLp~~~Y~l~~~~ 1443 (2307)
+..+++||.|+.++.-.
T Consensus 709 ~~~~l~p~~P~~~fh~~ 725 (881)
T KOG0966|consen 709 KKQRLLPWLPRDLFHAT 725 (881)
T ss_pred hhhhccccccHHHHhhC
Confidence 99999999999988754
No 64
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.18 E-value=8e-11 Score=153.12 Aligned_cols=190 Identities=19% Similarity=0.199 Sum_probs=132.6
Q ss_pred hhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeEEEEEE
Q psy7164 34 KIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVN 113 (2307)
Q Consensus 34 ~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~ 113 (2307)
+.++..+-.|..+|+..| .|-.++ ..+|++++.|+|+||+|.....+..+.|.|.+.
T Consensus 10 ~~~~~~S~aEFF~kNk~~-lGf~~~----------------------~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~ 66 (659)
T PRK14867 10 DEFKEHSISEFFRKNKHM-LGYSGK----------------------LRSMTTIIHELVTNSLDACEEAEILPDIKVEIE 66 (659)
T ss_pred HHHHHhHHHHHHhhCCee-eechhH----------------------HHHHHHHHHHHHHHHHHHhhccCCCceEEEEEE
Confidence 457888999999999999 444332 468999999999999998754555668999997
Q ss_pred ccC-C--eEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCccccccCC
Q psy7164 114 QET-N--TISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGR 190 (2307)
Q Consensus 114 ~d~-g--sIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGl 190 (2307)
..+ + .|+|.|||+|||.+..+ .+|..+|++ +||.. +..+.|.
T Consensus 67 ~~g~~~~~I~V~DNG~GIp~e~l~--------~iFerF~at-------------------------SK~~~--~~qS~G~ 111 (659)
T PRK14867 67 KLGSDHYKVAVEDNGPGIPPEFVP--------KVFGKMLAG-------------------------SKMHR--LIQSRGQ 111 (659)
T ss_pred ECCCcEEEEEEEeeCeeCCHHHHh--------hhhcccccc-------------------------Ccccc--eeccCCC
Confidence 643 2 49999999999987543 377777777 77753 3578899
Q ss_pred Cccccccccccccee-----EEEEEeecccEEEEEEeecCCCcCCCccc---cCCCCCCCcEEEEEeCcccccccccCHH
Q psy7164 191 NGYGAKLCNIFSSKF-----VVETSCSEYKKSFKQVWKDNMSKVTSPEI---KSGSKDDFTKITFTPDLTKFKMTSLDKD 262 (2307)
Q Consensus 191 hGVGasvvNAlS~~f-----~Vev~~~~~gk~y~q~f~~g~~~~~~~~i---~~~~~~~GT~VtF~PD~~iF~~~~f~~d 262 (2307)
+|+|++++.++|+.+ .+++.. ..|..|...+.-.+.......+ ......+||+|+|. |..--|+..
T Consensus 112 rG~GLa~a~~vsql~~G~pI~I~S~~-g~G~~f~i~L~i~i~~n~G~I~~~~~~~~~~~GT~Ie~~-----V~dLFynR~ 185 (659)
T PRK14867 112 QGIGAAGVLLFSQITTGKPLKITTST-GDGKIHEMEIKMSVEKNEGDIVSHKVREGFWRGTRVEGE-----FKEVTYNRR 185 (659)
T ss_pred CcccHHHHHHHHHHhcCCcEEEEEEc-CCCEEEEEEEEEEecccCCeecccccCCCCCCCcEEEEE-----Eeeceechh
Confidence 999999999999885 565543 3566666665443211111111 11234689999952 111112221
Q ss_pred HHHHHHHHHHHhhccCCCcEEEeccc
Q psy7164 263 MVDLITRRAYDAAASTKDVKVFLNGE 288 (2307)
Q Consensus 263 ~l~~l~~Rl~dlA~LnpGLkI~lnde 288 (2307)
... +..+++.+|..||+++|.|.+.
T Consensus 186 E~~-i~e~l~r~ALanP~i~f~l~~~ 210 (659)
T PRK14867 186 EQG-PFEYLRRISLSTPHAKITLKDP 210 (659)
T ss_pred hHH-HHHHHHHHHHhCCCcEEEEEeC
Confidence 222 4688999999999999999754
No 65
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=98.98 E-value=4.6e-10 Score=108.83 Aligned_cols=74 Identities=35% Similarity=0.598 Sum_probs=61.7
Q ss_pred CCCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCC--ChhhHhhcC-CCCceec
Q psy7164 1342 RGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNL--PHTKIKKLK-PGDKIIK 1418 (2307)
Q Consensus 1342 ~~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l--~~~K~~~~k-~~~kIVk 1418 (2307)
++.+|+||.|||+++.. ..+++|.++|..|||++...++..+||||+... ...|..... .+.+||+
T Consensus 2 ~~~~F~g~~f~i~~~~~-----------~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~ 70 (78)
T PF00533_consen 2 KPKIFEGCTFCISGFDS-----------DEREELEQLIKKHGGTVSNSFSKKTTHVIVGNPNKRTKKYKAAIANGIPIVS 70 (78)
T ss_dssp STTTTTTEEEEESSTSS-----------SHHHHHHHHHHHTTEEEESSSSTTSSEEEESSSHCCCHHHHHHHHTTSEEEE
T ss_pred CCCCCCCEEEEEccCCC-----------CCHHHHHHHHHHcCCEEEeecccCcEEEEeCCCCCccHHHHHHHHCCCeEec
Confidence 46899999999977664 788999999999999999999999999999875 333333322 3899999
Q ss_pred cChHHHHH
Q psy7164 1419 PEWIVDSI 1426 (2307)
Q Consensus 1419 peWI~DSI 1426 (2307)
|+||.|||
T Consensus 71 ~~Wi~~ci 78 (78)
T PF00533_consen 71 PDWIEDCI 78 (78)
T ss_dssp THHHHHHH
T ss_pred HHHHHHhC
Confidence 99999997
No 66
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.92 E-value=4.7e-09 Score=128.89 Aligned_cols=165 Identities=19% Similarity=0.154 Sum_probs=113.7
Q ss_pred cchhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC-eEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCccc
Q psy7164 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN-TISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEED 159 (2307)
Q Consensus 81 ~pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g-sIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~ 159 (2307)
+..+..++.|+|+||+|.. ++.|.|.+..++. .|+|.|||.||+.+..+ .+|... +.+|+.+.
T Consensus 20 i~~~~~~l~eLi~Na~dA~-----a~~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~--------~~~~~~-~tsk~~~~-- 83 (312)
T TIGR00585 20 IERPASVVKELVENSLDAG-----ATRIDVEIEEGGLKLIEVSDNGSGIDKEDLP--------LACERH-ATSKIQSF-- 83 (312)
T ss_pred hhhHHHHHHHHHHHHHHCC-----CCEEEEEEEeCCEEEEEEEecCCCCCHHHHH--------HHhhCC-CcCCCCCh--
Confidence 4678899999999999942 3689999876432 59999999999986432 233322 22233221
Q ss_pred ccccccccccccccccccCCCCCccccccCCCcccccccccccceeEEEEEe-ecccEEEEEEeecCCCcCCCccccCCC
Q psy7164 160 KVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSC-SEYKKSFKQVWKDNMSKVTSPEIKSGS 238 (2307)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGVGasvvNAlS~~f~Vev~~-~~~gk~y~q~f~~g~~~~~~~~i~~~~ 238 (2307)
++.....+-|.+|.|++...++| .++|++.. ..++..|+.. .+|..... .....
T Consensus 84 --------------------~~~~~~~~~G~rG~al~si~~~s-~~~i~S~~~~~~~~~~~~~-~~g~~~~~---~~~~~ 138 (312)
T TIGR00585 84 --------------------EDLERIETLGFRGEALASISSVS-RLTITTKTSAADGLAWQAL-LEGGMIEE---IKPAP 138 (312)
T ss_pred --------------------hHhhcccccCccchHHHHHHhhC-cEEEEEeecCCCcceEEEE-ECCCcCcc---ccccc
Confidence 12233467899999999999999 78998875 4566677766 34432111 12234
Q ss_pred CCCCcEEEEE------eCcccccccccCHHHHHHHHHHHHHhhccCCCcEEEeccc
Q psy7164 239 KDDFTKITFT------PDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGE 288 (2307)
Q Consensus 239 ~~~GT~VtF~------PD~~iF~~~~f~~d~l~~l~~Rl~dlA~LnpGLkI~lnde 288 (2307)
.++||+|++. |+...|- ..... ....+...+...|.++|++++.+...
T Consensus 139 ~~~GTtV~v~~lf~n~p~r~~~~-~~~~~-~~~~i~~~l~~~al~~p~i~f~l~~~ 192 (312)
T TIGR00585 139 RPVGTTVEVRDLFYNLPVRRKFL-KSPKK-EFRKILDLLNRYALIHPDVSFSLTHD 192 (312)
T ss_pred CCCccEEEEchhhccCchhhhhc-cCcHH-HHHHHHHHHHHHhhcCCCeEEEEEEC
Confidence 5799999998 9988765 23332 23456688999999999999988754
No 67
>KOG3226|consensus
Probab=98.90 E-value=4.7e-10 Score=132.23 Aligned_cols=93 Identities=24% Similarity=0.500 Sum_probs=85.2
Q ss_pred CCCCCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCChhhHhhcCC-CCceec
Q psy7164 1340 DSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKP-GDKIIK 1418 (2307)
Q Consensus 1340 ~~~~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~K~~~~k~-~~kIVk 1418 (2307)
..-++|.+||+|.++|+.+ |.+.+|+...+..|++|...+.+.+||+||..-..-|..+.+. |.+||+
T Consensus 312 ~el~klL~GVV~VlSGfqN-----------P~Rs~LRskAl~LGAkY~pDW~~gsThLICAF~NTPKy~QV~g~Gg~IV~ 380 (508)
T KOG3226|consen 312 TELSKLLEGVVFVLSGFQN-----------PERSTLRSKALTLGAKYQPDWNAGSTHLICAFPNTPKYRQVEGNGGTIVS 380 (508)
T ss_pred hhHHHhhhceEEEEecccC-----------chHHHHHHHHHhhcccccCCcCCCceeEEEecCCCcchhhcccCCceEee
Confidence 3456899999999999997 9999999999999999999999999999999877778888775 679999
Q ss_pred cChHHHHHHhCCCCCCcCceeeecC
Q psy7164 1419 PEWIVDSISAGKLLDHKKYLLYTGT 1443 (2307)
Q Consensus 1419 peWI~DSI~~gklLp~~~Y~l~~~~ 1443 (2307)
-+||+||.+..|+|||++|+|..+.
T Consensus 381 keWI~~Cy~~kk~lp~rrYlm~~~~ 405 (508)
T KOG3226|consen 381 KEWITECYAQKKLLPIRRYLMHAGK 405 (508)
T ss_pred HHHHHHHHHHHhhccHHHHHhcCCC
Confidence 9999999999999999999998763
No 68
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=98.84 E-value=5.3e-09 Score=100.18 Aligned_cols=75 Identities=31% Similarity=0.544 Sum_probs=62.1
Q ss_pred CCccceEEEEee-eeccccccccccCCCCHHHHHHHHHHcCCEEEEeccC-CccEEEeCCCChhhH---hhcCCCCceec
Q psy7164 1344 GIFQGVAIFVNG-YTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESS-RTTHIIASNLPHTKI---KKLKPGDKIIK 1418 (2307)
Q Consensus 1344 ~IF~G~~iyVnG-yt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~-~vTHIIas~l~~~K~---~~~k~~~kIVk 1418 (2307)
.+|+|+.||+.| ... +.+.+|.+++..|||++...++. .+||+|+......+. .....+.+||+
T Consensus 1 ~~f~g~~~~~~g~~~~-----------~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~~~~~~~~~~~~~~~~iV~ 69 (80)
T smart00292 1 KLFKGKVFVITGKFDK-----------NERDELKELIEALGGKVTSSLSSKTTTHVIVGSPEGGKLELLLAIALGIPIVT 69 (80)
T ss_pred CccCCeEEEEeCCCCC-----------ccHHHHHHHHHHcCCEEecccCccceeEEEEcCCCCccHHHHHHHHcCCCCcc
Confidence 489999999999 333 78899999999999999999987 899999987554432 22224789999
Q ss_pred cChHHHHHHhC
Q psy7164 1419 PEWIVDSISAG 1429 (2307)
Q Consensus 1419 peWI~DSI~~g 1429 (2307)
|+||.||++++
T Consensus 70 ~~Wi~~~~~~~ 80 (80)
T smart00292 70 EDWLLDCLKAG 80 (80)
T ss_pred HHHHHHHHHCc
Confidence 99999999874
No 69
>PF11799 IMS_C: impB/mucB/samB family C-terminal domain; InterPro: IPR017961 This entry represents the little finger domain found in Y-family (lesion bypass) DNA polymerases. Y-family polymerases were originally known as UmuC/DinB/Rev1/Rad30 after each branch of the family. These enzymes are characterised by their low-fidelity synthesis on undamaged DNA templates and by their ability to traverse replication-blocking lesions. By contrast, high-fidelity polymerases (such as DNA polymerase III) are sensitive to distortions in the DNA template. As a result, Y-family polymerases can extend primer strands across DNA strand lesions that would otherwise stall replicative polymerases. To minimize mutations through their low fidelity synthesis, these enzymes are regulated, and are thought to interact with processivity factors, beta-clamp or proliferating cell nuclear antigen (PCNA), which are also essential for the function of replicative DNA polymerases []. Organisms can contain more than one Y-family polymerase, each with a unique DNA damage bypass and fidelity profile. For example, humans posses four Y-family polymerases: DNA polymerases kappa, iota, eta and Rev1. Y-family polymerases show no homology to DNA polymerases from the A-, B-, C-, D- or X-families []. The Y-family of DNA polymerases includes the following enzymes: Prokaryotic DNA polymerase IV (DinB) []. Archaeal DinB homologue DNA polymerase IV []. Eukaryotic DinB homologue DNA polymerase kappa []. Prokarytoic DNA repair proteins UmuC and UmuD []. Eukaryotic Rad30 homologues DNA polymerase eta and iota [, ]. Eukaryotic DNA repair protein Rev1 []. Human DNA polymerase kappa is a right-handed shaped molecule with palm, fingers, thumb, little finger and wrist subdomains []. This entry represents the little finger domain.; GO: 0003684 damaged DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006281 DNA repair; PDB: 3PZP_B 2OH2_B 2W7O_B 3IN5_B 1T94_A 2W7P_B 3GV8_B 3G6V_A 4EBC_A 3GV5_B ....
Probab=98.81 E-value=1.8e-08 Score=106.73 Aligned_cols=112 Identities=25% Similarity=0.384 Sum_probs=91.5
Q ss_pred CCccc-cccCCcccEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhccccceEEEEEEEEecCCCcccccccccCceee
Q psy7164 2035 DKELT-FEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCD 2113 (2307)
Q Consensus 2035 ~~~V~-~~~~rKSIs~e~nfg~r~~~~eel~~~L~~La~eL~~RLr~~~~~~r~LTLkL~~R~~~Ap~ep~K~lGhG~cD 2113 (2307)
++||. +..++|||+++.+|+.++.+.+++..+|..||.+|+.||++.++.+++|+|++++. +.+.|.
T Consensus 1 ~~pV~~~~~~~ksi~~~~t~~~~~~~~~~i~~~l~~l~~~l~~rL~~~~~~~~~i~l~l~~~------------~~~~~~ 68 (127)
T PF11799_consen 1 DEPVQQPRPPPKSIGSERTFPEPISDREEIEEWLRELAEELAERLRERGLAARTITLKLRYS------------DFGRCS 68 (127)
T ss_dssp ------SCSS-SEEEEEEEECEEESSHHHHHHHHHHHHHHHHHHHHHCTEEEEEEEEEEEET------------TSCSCE
T ss_pred CCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHhhCcCCceEEEEEEec------------CCcccc
Confidence 46777 77899999999999999999999999999999999999999999999999999974 233345
Q ss_pred eecceecc--CcCChhHHHHHHHHHHhhh-cCCCCCceEEeeeecccc
Q psy7164 2114 YITKSSSL--PIYERPLIITYFLLLVRSA-EAPREASKFLGHGVCDYI 2158 (2307)
Q Consensus 2114 ~~skS~~L--pt~~~~~L~~aA~~lL~~i-~~~~~~yr~~Gv~l~dl~ 2158 (2307)
..+++..+ |+.+...|..+++.+++++ +..+.+++.+||.+.++.
T Consensus 69 ~~~~~~~l~~p~~~~~~l~~~~~~l~~~~~~~~~~~vr~igv~~~~l~ 116 (127)
T PF11799_consen 69 SRSRSIRLPFPTNDADELLKAARELLERLLYDPGFPVRLIGVSASDLI 116 (127)
T ss_dssp EEEEEEEECCCEHCHHHHHHHHHHHHHHHHHHTTCGEEEEEEEEEEEE
T ss_pred eeeEEEeccCCcCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEEECCCc
Confidence 55556666 7778899999999999554 666888999999998887
No 70
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.80 E-value=1.7e-08 Score=131.79 Aligned_cols=188 Identities=15% Similarity=0.190 Sum_probs=126.1
Q ss_pred hhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeEEEEEEc
Q psy7164 35 IYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQ 114 (2307)
Q Consensus 35 ~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~ 114 (2307)
.++.++-.|.+.++..|.--+.+ ...|.+++.|+|+||+|.....+....|.|.+..
T Consensus 21 ~~~~iS~aEfF~kN~~~lgfD~d-----------------------~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~ 77 (795)
T PRK14868 21 SQREISIAEFFEKNKHMLGFDSG-----------------------ARGLVTAVKEAVDNALDATEEAGILPDIYVEIEE 77 (795)
T ss_pred hccccceeeecccCcceeeccCC-----------------------HHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEE
Confidence 56677778888888877443332 2579999999999999986544444578888876
Q ss_pred cCC--eEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCccccccCCCc
Q psy7164 115 ETN--TISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNG 192 (2307)
Q Consensus 115 d~g--sIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhG 192 (2307)
.++ .|+|.|||.|||-+..+ .+|..++++ ++|... ..+.|..|
T Consensus 78 ~g~~v~I~VeDNG~GIp~EdLp--------~IFerf~~t-------------------------SKf~~~--~~srG~rG 122 (795)
T PRK14868 78 VGDYYRLVVEDNGPGITKEQIP--------KVFGKLLYG-------------------------SRFHAR--EQSRGQQG 122 (795)
T ss_pred CCCEEEEEEEEcCCCCCHHHHH--------HHhhhhccc-------------------------cccccc--ccCCCCCc
Confidence 544 58999999999987543 366666555 566432 25678899
Q ss_pred ccccccccccce-----eEEEEEeecccEE--EEEEeecCC--CcCCCccccCCCCCCCcEEEEEeCcccccccccCHHH
Q psy7164 193 YGAKLCNIFSSK-----FVVETSCSEYKKS--FKQVWKDNM--SKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDM 263 (2307)
Q Consensus 193 VGasvvNAlS~~-----f~Vev~~~~~gk~--y~q~f~~g~--~~~~~~~i~~~~~~~GT~VtF~PD~~iF~~~~f~~d~ 263 (2307)
.|++++-++|+. +.|++.....+.. |+.....|. |.............+||+|+.. +|.+ +.. .
T Consensus 123 ~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~~~~~~~~GT~IeV~----Lf~N--~pA-R 195 (795)
T PRK14868 123 IGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEETTTWDRPHGTRIELE----MEAN--MRA-R 195 (795)
T ss_pred eehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceecceecccCCCCceEEEEE----EEcc--Cch-h
Confidence 999999999986 6777753222233 344433331 1110011122245789999987 5653 222 2
Q ss_pred HHHHHHHHHHhhccCCCcEEEeccc
Q psy7164 264 VDLITRRAYDAAASTKDVKVFLNGE 288 (2307)
Q Consensus 264 l~~l~~Rl~dlA~LnpGLkI~lnde 288 (2307)
. .+..+++.+|..||.++|.|.+.
T Consensus 196 ~-kI~eyl~r~Al~nP~a~f~l~~~ 219 (795)
T PRK14868 196 Q-QLHDYIKHTAVVNPHARIELREP 219 (795)
T ss_pred h-hHHHHHHHHHhhCCCeEEEEEEC
Confidence 1 25688999999999999999765
No 71
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=98.66 E-value=3.2e-08 Score=92.60 Aligned_cols=69 Identities=32% Similarity=0.552 Sum_probs=58.2
Q ss_pred ceEEEEeeee-ccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCChhh-H-hhcCCCCceeccChHHH
Q psy7164 1348 GVAIFVNGYT-KHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTK-I-KKLKPGDKIIKPEWIVD 1424 (2307)
Q Consensus 1348 G~~iyVnGyt-~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~K-~-~~~k~~~kIVkpeWI~D 1424 (2307)
|+.||++|+. . +.+.+|.+++..+||++...++..+||+|+......+ . .....+.+||+++||.|
T Consensus 1 ~~~~~i~g~~~~-----------~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~~~~~~~~~~~~iV~~~Wi~~ 69 (72)
T cd00027 1 GLTFVITGDLPS-----------EERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPKKLLKAIKLGIPIVTPEWLLD 69 (72)
T ss_pred CCEEEEEecCCC-----------cCHHHHHHHHHHcCCEEeccccCCceEEEECCCCCchHHHHHHHcCCeEecHHHHHH
Confidence 6899999997 4 7899999999999999999999899999999866543 2 22223799999999999
Q ss_pred HHH
Q psy7164 1425 SIS 1427 (2307)
Q Consensus 1425 SI~ 1427 (2307)
|++
T Consensus 70 ~~~ 72 (72)
T cd00027 70 CLK 72 (72)
T ss_pred HhC
Confidence 984
No 72
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=98.61 E-value=2.8e-08 Score=102.41 Aligned_cols=96 Identities=27% Similarity=0.379 Sum_probs=79.3
Q ss_pred EEEEEecCccchhcccCcccccccceeeccCCcccchhhccchHH-HhhcHHHHHHHHHhccccCCCcCCcCCCCCCCCC
Q psy7164 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQ-ILENAEINNLVKILGLQYSKKYTTVEDMKTLRYG 551 (2307)
Q Consensus 473 eLfIvEGDSA~~~a~sGsak~gRD~qaIlPLRGKiLNV~ka~~~k-i~~N~EI~~Li~aLGlg~~~~y~~~~d~~~LRYg 551 (2307)
|||||||+|+...+.. ..+.+.+.|+|+.|+++|........ ..+++.|+.|.+.+ .+|+
T Consensus 1 ~liIvE~ps~a~~i~~---~l~~~~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~----------------~~~~ 61 (100)
T PF01751_consen 1 ELIIVEKPSDAKAIAK---ALGGEEYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLL----------------KKAD 61 (100)
T ss_dssp EEEEESSHHHHHHHHH---HSSTTTEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHH----------------HSCS
T ss_pred CEEEEeCHHHHHHHHH---HcCCCCEEEEEeCCcccccccccccccccccccchhhHHHh----------------hhcc
Confidence 7999999999743311 11234589999999999999877655 88889999999887 2588
Q ss_pred cEEecccCCCCCCchhHHHHHHHHHhhhhhhcCCcEEE
Q psy7164 552 RLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEE 589 (2307)
Q Consensus 552 kIiImTDaDvDG~HI~~LLltff~r~~p~Li~~G~vy~ 589 (2307)
.|||+||+|.+|.||...++.++...+|.+ ..++++
T Consensus 62 ~iiiatD~D~EGe~Ia~~i~~~~~~~~~~~--~~R~~~ 97 (100)
T PF01751_consen 62 EIIIATDPDREGELIAWEIIELLGKNNPKL--IKRVWF 97 (100)
T ss_dssp EEEEEC-SSHHHHHHHHHHHHHHHHHSHHH--TTEEEE
T ss_pred EeeecCCCChHHHHHHHHHHHHHhHhCCCc--CCEEEE
Confidence 999999999999999999999999999999 777765
No 73
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=98.26 E-value=3.8e-07 Score=86.25 Aligned_cols=62 Identities=31% Similarity=0.574 Sum_probs=50.5
Q ss_pred eEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCChhhHhhcCC-CCceeccCh
Q psy7164 1349 VAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKP-GDKIIKPEW 1421 (2307)
Q Consensus 1349 ~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~K~~~~k~-~~kIVkpeW 1421 (2307)
|+|+++||.. +.+..|++++..+||.|..+++.++||+||.....+|....++ +.+||+|+|
T Consensus 1 ~~i~~sg~~~-----------~~~~~l~~~i~~~Gg~~~~~lt~~~THLI~~~~~~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICFSGFSG-----------KERSQLRKLIEALGGKYSKDLTKKTTHLICSSPEGKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp -EEEEEEB-T-----------TTCCHHHHHHHCTT-EEESSSSTT-SEEEEES--HHHHHHHHHCTSEEEEHHH
T ss_pred CEEEECCCCH-----------HHHHHHHHHHHHCCCEEeccccCCceEEEEeCCCcHHHHHHHHCCCcEECCCC
Confidence 6899999986 6688999999999999999999999999998888888777654 799999999
No 74
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.13 E-value=1e-06 Score=91.59 Aligned_cols=88 Identities=25% Similarity=0.409 Sum_probs=63.7
Q ss_pred chhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCccc
Q psy7164 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEED 159 (2307)
Q Consensus 82 pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~ 159 (2307)
..|++++.|+|+||+|.+... ..|.|.+..+++ .|+|+|||.|||.+..+. +|..+.++
T Consensus 4 ~~l~~il~~ll~Na~~~~~~~---~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~--------~~~~~~~~-------- 64 (111)
T PF02518_consen 4 DRLRQILSELLDNAIKHSPEG---GKIDITIEEDDDHLSIEISDNGVGIPPEELEK--------LFEPFFTS-------- 64 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---SEEEEEEEEETTEEEEEEEESSSSTTHHHHHH--------HCSTTSHS--------
T ss_pred HHHHHHHHHHHHHHHHHhcCC---CEEEEEEEEecCeEEEEEEecccccccccccc--------chhhcccc--------
Confidence 578999999999999998643 588888887544 899999999999864321 22222222
Q ss_pred ccccccccccccccccccCCCCCccccccCCCcccccccccccceeEEEEE
Q psy7164 160 KVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210 (2307)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGVGasvvNAlS~~f~Vev~ 210 (2307)
.+ .....+.+|+|+.+++.+++.+..+++
T Consensus 65 -----------------~~-----~~~~~~g~GlGL~~~~~~~~~~~g~l~ 93 (111)
T PF02518_consen 65 -----------------DK-----SETSISGHGLGLYIVKQIAERHGGELT 93 (111)
T ss_dssp -----------------SS-----SSGGSSSSSHHHHHHHHHHHHTTEEEE
T ss_pred -----------------cc-----cccccCCCChHHHHHHHHHHHCCCEEE
Confidence 11 123334499999999999999877653
No 75
>PRK14083 HSP90 family protein; Provisional
Probab=97.94 E-value=5.5e-05 Score=100.09 Aligned_cols=164 Identities=19% Similarity=0.283 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhhhhcccC-----CCCCeEEEEE-EccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcc
Q psy7164 85 YKIFDEILVNACDNKQRD-----PKMNCIKITV-NQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEE 158 (2307)
Q Consensus 85 ~~i~~EILdNavDe~~r~-----g~~~~I~V~i-~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~ 158 (2307)
...+.|+|.||.|..... +....|.|++ +.+..+++|.|||.||+.+.... .|+++-.|+|...
T Consensus 25 ~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~d~~~~~l~I~DnGiGmt~eel~~--------~l~~ig~S~k~~~-- 94 (601)
T PRK14083 25 RVYVRELLQNAVDAITARRALDPTAPGRIRIELTDAGGGTLIVEDNGIGLTEEEVHE--------FLATIGRSSKRDE-- 94 (601)
T ss_pred HHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEccCCCcEEEEEeCCCCCCHHHHHH--------HHhhhccchhhhh--
Confidence 457899999999985421 1234788888 66668999999999999764322 3344434411110
Q ss_pred cccccccccccccccccccCCCCCccccccCCCcccccccccccceeEEEEEeecccEEEEEEeec-CCCcCCCccccCC
Q psy7164 159 DKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKD-NMSKVTSPEIKSG 237 (2307)
Q Consensus 159 ~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~-g~~~~~~~~i~~~ 237 (2307)
.+. .....-.|.+|||...|=++++.++|++....++..|. |.. |-..-....+...
T Consensus 95 -------------------~~~-~~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~--W~~~~~g~y~i~~~~~~ 152 (601)
T PRK14083 95 -------------------NLG-FARNDFLGQFGIGLLSCFLVADEIVVVSRSAKDGPAVE--WRGKADGTYSVRKLETE 152 (601)
T ss_pred -------------------hhc-ccccccccccccceEEEEEecCEEEEEeccCCCCceEE--EEECCCCceEEEeCCCC
Confidence 000 01123469999999999999999999986422344443 432 1111111111122
Q ss_pred CCCCCcEEEEEe--CcccccccccCHHHHHHHHHHHHHhhccCCCcEEEeccc
Q psy7164 238 SKDDFTKITFTP--DLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGE 288 (2307)
Q Consensus 238 ~~~~GT~VtF~P--D~~iF~~~~f~~d~l~~l~~Rl~dlA~LnpGLkI~lnde 288 (2307)
...+||+|+... |..- -++.+.+..+.++.- .| -..-|+++++
T Consensus 153 ~~~~GT~I~L~l~~d~~~----~~~~~~i~~li~~ys--~~--i~~pI~l~~~ 197 (601)
T PRK14083 153 RAEPGTTVYLRPRPDAEE----WLERETVEELAKKYG--SL--LPVPIRVEGE 197 (601)
T ss_pred CCCCCCEEEEEecCchhh----hccHHHHHHHHHHHh--cc--CCCCcccCCc
Confidence 456999999875 4332 244555543333221 12 2345666664
No 76
>PF11798 IMS_HHH: IMS family HHH motif; InterPro: IPR024728 This helix-hairpin-helix motif is found in proteins belonging to the type-Y family of DNA polymerases []. This type of polymerases are thought to be involved in UV protection and mutation [, ]. ; PDB: 3PZP_B 2OH2_B 2W7O_B 3IN5_B 1T94_A 2W7P_B 2W8K_A 2AGQ_A 1RYR_A 3RAX_A ....
Probab=97.81 E-value=1e-05 Score=66.98 Aligned_cols=32 Identities=31% Similarity=0.651 Sum_probs=28.7
Q ss_pred hhhHHHHhhcCCCCCCCCCChhHHHHHHhcCC
Q psy7164 1969 PQIISDFMLNIPLSDLPGVGHSLLFKLNSLGA 2000 (2307)
Q Consensus 1969 pe~v~~fL~~LPV~dLpGIG~~~~~kL~~lGI 2000 (2307)
|+++.+||+++||+++||||++++++|+++||
T Consensus 1 pe~v~~~l~~lpi~~~~GIG~kt~~kL~~~GI 32 (32)
T PF11798_consen 1 PEDVPEFLWPLPIRKFWGIGKKTAKKLNKLGI 32 (32)
T ss_dssp CHHHHHHHHCSBGGGSTTS-HHHHHHHHCTT-
T ss_pred ChHHHHHHhcCCHHhhCCccHHHHHHHHHccC
Confidence 57899999999999999999999999999997
No 77
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=97.77 E-value=1.1e-05 Score=88.17 Aligned_cols=98 Identities=20% Similarity=0.301 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhhhhcccCCCCCeEEEEEEccC---CeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCccccc
Q psy7164 85 YKIFDEILVNACDNKQRDPKMNCIKITVNQET---NTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKV 161 (2307)
Q Consensus 85 ~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~---gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~ 161 (2307)
..++.|+|+||+|... +.|.|.|+.++ ..|.|.|||.|||.+.... +..+..+
T Consensus 4 ~~al~ElI~Ns~DA~a-----~~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~---------~~~~g~s---------- 59 (137)
T PF13589_consen 4 EDALRELIDNSIDAGA-----TNIKISIDEDKKGERYIVIEDNGEGMSREDLES---------FFRIGRS---------- 59 (137)
T ss_dssp THHHHHHHHHHHHHHH-----HHEEEEEEEETTTTTEEEEEESSS---HHHHHH---------HTTCHHT----------
T ss_pred HHHHHHHHHHHHHccC-----CEEEEEEEcCCCCCcEEEEEECCcCCCHHHHHH---------hccccCC----------
Confidence 5799999999999754 36999998753 6999999999999874321 1122222
Q ss_pred ccccccccccccccccCCCCCccccccCCCccccc-ccccccceeEEEEEeecccEEEEEEe
Q psy7164 162 TGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAK-LCNIFSSKFVVETSCSEYKKSFKQVW 222 (2307)
Q Consensus 162 ~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGVGas-vvNAlS~~f~Vev~~~~~gk~y~q~f 222 (2307)
++.+. .-+.+.|.+|+|++ .+..++..++|++........|...+
T Consensus 60 ---------------~k~~~-~~~~~~G~~G~G~k~A~~~~~~~~~v~S~~~~~~~~~~~~~ 105 (137)
T PF13589_consen 60 ---------------SKKSE-KDRQSIGRFGIGLKLAIFSLGDRVEVISKTNGESFTYTIDY 105 (137)
T ss_dssp ---------------HHHHH-HHGGGGGGGTSGCGGGGGGTEEEEEEEEESTTSSSEEEEEE
T ss_pred ---------------CCCch-hhhhcCCCcceEHHHHHHHhcCEEEEEEEECCCCcEEEEEE
Confidence 22211 12457899999944 56788999999987533333444444
No 78
>PRK05218 heat shock protein 90; Provisional
Probab=97.72 E-value=0.0011 Score=88.76 Aligned_cols=135 Identities=19% Similarity=0.211 Sum_probs=79.1
Q ss_pred HHHHHHHHHhhhhccc-------------CCCCCeEEEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccc
Q psy7164 86 KIFDEILVNACDNKQR-------------DPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSS 152 (2307)
Q Consensus 86 ~i~~EILdNavDe~~r-------------~g~~~~I~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~ 152 (2307)
..+.|+|.||.|.... +.....|.|.++.++..|+|.|||.||..+.... .|++.-+|+
T Consensus 29 v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG~GMt~eel~~--------~l~~ia~Sg 100 (613)
T PRK05218 29 IFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEARTLTISDNGIGMTREEVIE--------NLGTIAKSG 100 (613)
T ss_pred HHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCCeEEEEECCCCCCHHHHHH--------HHHhhcccc
Confidence 4789999999998421 2233578888887777999999999999764321 122211110
Q ss_pred cCCCcccccccccccccccccccccCCCC--CccccccCCCcccccccccccceeEEEEEeec-ccEEEEEEeecCCCcC
Q psy7164 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYND--EEDKVTGGRNGYGAKLCNIFSSKFVVETSCSE-YKKSFKQVWKDNMSKV 229 (2307)
Q Consensus 153 k~~~~~~~~~~~~~~~~~~~~~~g~nfd~--~~yk~sgGlhGVGasvvNAlS~~f~Vev~~~~-~gk~y~q~f~~g~~~~ 229 (2307)
. .. |.. ++.. ..-.-..|++|+|.-.+=+++.+++|++.... ....|......|-.
T Consensus 101 ------~--~~------f~~-----k~~~~~~~~~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g~~~-- 159 (613)
T PRK05218 101 ------T--KE------FLE-----KLKGDQKKDSQLIGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDGEGE-- 159 (613)
T ss_pred ------c--hh------HHH-----HhhcccccccccccccCcCchhhhhccCEEEEEEcCCCCCCceEEEEEeCCce--
Confidence 0 00 000 1100 11134679999999888888889999885321 12344444433211
Q ss_pred CCccccCCC-CCCCcEEEEEeCc
Q psy7164 230 TSPEIKSGS-KDDFTKITFTPDL 251 (2307)
Q Consensus 230 ~~~~i~~~~-~~~GT~VtF~PD~ 251 (2307)
-.+.... ..+||+|+.....
T Consensus 160 --~~i~~~~~~~~GT~I~l~Lk~ 180 (613)
T PRK05218 160 --YTIEEIEKEERGTEITLHLKE 180 (613)
T ss_pred --eEEeECCCCCCCcEEEEEECc
Confidence 1222222 3689999986544
No 79
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00062 Score=88.82 Aligned_cols=247 Identities=21% Similarity=0.336 Sum_probs=134.3
Q ss_pred HHHHHHHHhhhhcc--c-----CC------CCCeEEEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEee-cccc
Q psy7164 87 IFDEILVNACDNKQ--R-----DP------KMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL-LTSS 152 (2307)
Q Consensus 87 i~~EILdNavDe~~--r-----~g------~~~~I~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L-~ag~ 152 (2307)
-+.|+|.||.|.+. | ++ .-..|.|.++.++++++|.|||.||--+.... . +|++ .+|
T Consensus 31 FLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~kTLtI~DNGIGMT~~Ev~~-------~-LgTIAkSg- 101 (623)
T COG0326 31 FLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDNKTLTISDNGIGMTKDEVIE-------N-LGTIAKSG- 101 (623)
T ss_pred HHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccCCEEEEEeCCCCCCHHHHHH-------H-HHHhhhcc-
Confidence 47899999999852 1 11 13578888888889999999999998653211 1 1111 112
Q ss_pred cCCCcccccccccccccccccccccCCCCCccccccCCCcccccccccccceeEEEEEeecccEEEEEEee-cCCCcCCC
Q psy7164 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWK-DNMSKVTS 231 (2307)
Q Consensus 153 k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~-~g~~~~~~ 231 (2307)
+ .+|. +...+.. .-..-.|+.|||.--+=+.+.+.+|.+.....+..| .|+ .|-..-+.
T Consensus 102 ---T-----~~F~------~~l~~~~----~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~--~W~S~g~g~ytv 161 (623)
T COG0326 102 ---T-----KEFL------ESLSEDQ----KDSDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAY--HWESDGEGEYTV 161 (623)
T ss_pred ---H-----HHHH------HHhcccc----ccccccccccchhhheeeeeeeEEEEeccCCCCcce--EEEEcCCCceEE
Confidence 0 0011 0000111 113458999999988888889888888643334555 453 34332222
Q ss_pred ccccCCCCC-CCcEEEEE--eCcccccccccCHHHHH-HHHHHHHHhhccCCCcEEEecccc-----------CCc----
Q psy7164 232 PEIKSGSKD-DFTKITFT--PDLTKFKMTSLDKDMVD-LITRRAYDAAASTKDVKVFLNGEK-----------LPV---- 292 (2307)
Q Consensus 232 ~~i~~~~~~-~GT~VtF~--PD~~iF~~~~f~~d~l~-~l~~Rl~dlA~LnpGLkI~lnder-----------~~~---- 292 (2307)
..+. ... .||+|+.. ||.+-|-. ...|. +++++..-++ +-|.+.+++ ++.
T Consensus 162 ~~~~--~~~~~GT~I~L~Lk~~e~efl~----~~rl~~ivkkYSd~i~-----~PI~~~~~~~~~~~~~~~e~iN~~~al 230 (623)
T COG0326 162 EDID--KEPRRGTEITLHLKEEEDEFLE----EWRLREIVKKYSDHIA-----YPIYIEGEKEKDEEVIEWETINKAKAL 230 (623)
T ss_pred eecc--CCCCCCcEEEEEECCchHHHhh----hhHHHHHHHHHhcccc-----cceEEeeeccccccchhHHHhccccCc
Confidence 2222 234 59999975 44433332 22232 2334433232 345555432 110
Q ss_pred -----c--chHHHHHHHhccCCCCCCCeEEEEEecCCeeEEE-EeecC-----CCce------EEEeeCCccCCC-----
Q psy7164 293 -----K--NFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVA-IAPSD-----RGFQ------QVSFVNSIATTK----- 348 (2307)
Q Consensus 293 -----~--G~~dYV~~~~~~~~~~~~~~~ii~e~~~~~~EVA-l~~s~-----~~y~------~~SFVNnI~T~e----- 348 (2307)
. --.+|-++|-.......+|+..++.+...++|+- +.|-. +-|. .-=|||++.-++
T Consensus 231 W~r~ksei~~eeY~eFYk~~~~d~~~Pl~~~h~~~EG~~ey~~ll~iP~~aPfdl~~~~~k~glkLYv~rVfI~Dd~~~l 310 (623)
T COG0326 231 WTRNKSEITDEEYKEFYKHLAHDFDDPLLWIHNKVEGRLEYTALLFIPSKAPFDLFRRDRKRGLKLYVNRVFIMDDAEDL 310 (623)
T ss_pred ccCChhhCChHHHHHHHHHhhcccCCCeEEEecccccceEEEEEEEccCCCCcccccccccCCcEEEEeeeEEeCChhhh
Confidence 0 2367887776433333466655554333333332 22211 1121 345666655433
Q ss_pred ---------------------------CcchhhHHHHHHHHHHHHHHHHhcc
Q psy7164 349 ---------------------------GGRHVDAVVDAIVKQIIEVVKKKNK 373 (2307)
Q Consensus 349 ---------------------------GGTHvdgfr~aLtr~i~~~~kkk~k 373 (2307)
.-.++..++.+|++.|...+++-.+
T Consensus 311 lP~yl~Fv~GvIDS~DLpLNvSRE~LQ~n~~l~~Irk~l~kkvl~~L~~La~ 362 (623)
T COG0326 311 LPNYLRFVRGVIDSEDLPLNVSREILQQNRILAAIRKALTKKVLSMLEKLAK 362 (623)
T ss_pred hhHHHhhheeeeecCCCCcccCHHHHccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999998887766543
No 80
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=97.43 E-value=0.00016 Score=97.52 Aligned_cols=87 Identities=22% Similarity=0.339 Sum_probs=74.0
Q ss_pred CCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCC-----hhhHhhcCC-CCce
Q psy7164 1343 GGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLP-----HTKIKKLKP-GDKI 1416 (2307)
Q Consensus 1343 ~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~-----~~K~~~~k~-~~kI 1416 (2307)
+..|.|++|.|.|... .++.+++++|..|||++..-+ +++||+|++.-. .+|+.+.+. |++|
T Consensus 187 ~kpL~G~~fviTGtl~-----------~sr~elK~~Ie~~GGkvsssV-s~~T~lIvt~~ev~k~gsSKlkkAk~lgIpI 254 (815)
T PLN03122 187 GKPFSGMMISLSGRLS-----------RTHQYWKKDIEKHGGKVANSV-EGVTCLVVSPAERERGGSSKIAEAMERGIPV 254 (815)
T ss_pred CCCcCCcEEEEeCCCC-----------CCHHHHHHHHHHcCCEEcccc-ccceEEEEcCccccccCccHHHHHHHcCCcC
Confidence 3579999999999875 588999999999999999988 667888887633 256555543 8999
Q ss_pred eccChHHHHHHhCCCCCCcCceeee
Q psy7164 1417 IKPEWIVDSISAGKLLDHKKYLLYT 1441 (2307)
Q Consensus 1417 VkpeWI~DSI~~gklLp~~~Y~l~~ 1441 (2307)
|+.+|++||++.++.+++..|++..
T Consensus 255 VsEd~L~d~i~~~k~~~~~~y~l~~ 279 (815)
T PLN03122 255 VREAWLIDSIEKQEAQPLEAYDVVS 279 (815)
T ss_pred ccHHHHHHHHhcCCcccchhhhhcc
Confidence 9999999999999999999999864
No 81
>KOG2481|consensus
Probab=97.38 E-value=0.00015 Score=90.84 Aligned_cols=82 Identities=28% Similarity=0.510 Sum_probs=64.0
Q ss_pred CCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEe-c---------cCCccEEEeCCCChhhHhhcCC
Q psy7164 1343 GGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHY-E---------SSRTTHIIASNLPHTKIKKLKP 1412 (2307)
Q Consensus 1343 ~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~-l---------~~~vTHIIas~l~~~K~~~~k~ 1412 (2307)
..+|+||.||+|--. +++-|.=+|..+||.+.-. + +.++||=|+.. |..+..-+
T Consensus 325 kslF~glkFfl~reV-------------PresL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDr-P~~~~~v~-- 388 (570)
T KOG2481|consen 325 KSLFSGLKFFLNREV-------------PRESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDR-PGQQTSVI-- 388 (570)
T ss_pred HHHhhcceeeeeccC-------------chHHHHHHHHHcCCceecCccCCCCcccccccceeeeeecc-cCccceee--
Confidence 379999999998663 5778888888899998644 1 24569999876 43333332
Q ss_pred CCceeccChHHHHHHhCCCCCCcCceee
Q psy7164 1413 GDKIIKPEWIVDSISAGKLLDHKKYLLY 1440 (2307)
Q Consensus 1413 ~~kIVkpeWI~DSI~~gklLp~~~Y~l~ 1440 (2307)
|...|.|+||+|||.+|.+||-..|..-
T Consensus 389 gR~YvQPQWvfDsvNar~llpt~~Y~~G 416 (570)
T KOG2481|consen 389 GRTYVQPQWVFDSVNARLLLPTEKYFPG 416 (570)
T ss_pred eeeeecchhhhhhccchhhccHhhhCCC
Confidence 5689999999999999999999999753
No 82
>cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. The GyrB dimerizes in response to ATP binding, and is homologous to the N-terminal half of eukaryotic Topo II and the ATPase fragment of MutL. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. Included in this group are proteins similar to human MLH1 and PMS2. MLH1 forms a heterodimer with PMS2 which functions in meiosis and in DNA mismatch
Probab=97.32 E-value=0.00044 Score=71.20 Aligned_cols=75 Identities=29% Similarity=0.270 Sum_probs=58.4
Q ss_pred cCCeeEEEEeecCC----CceEEEeeCCccCCCCcchhhHHHHHHHHHHHHHHHHhccccccceeeccccccccccchhh
Q psy7164 320 VNPRWEVAIAPSDR----GFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKL 395 (2307)
Q Consensus 320 ~~~~~EVAl~~s~~----~y~~~SFVNnI~T~eGGTHvdgfr~aLtr~i~~~~kkk~k~~~~~~~~~~~~~~~~~k~~k~ 395 (2307)
.+..++.++.+.+. .-.+++|||+.++..||+|..++.+++.+.++ .
T Consensus 25 ~~~~v~g~l~~~~~~~~~~~~~~~fvN~r~v~~~~~~~~~i~~~~~~~~~-------~---------------------- 75 (107)
T cd00329 25 DGFRVEGAISYPDSGRSSKDRQFSFVNGRPVREGGTHVKAVREAYTRALN-------G---------------------- 75 (107)
T ss_pred CCEEEEEEEeCCccCcccCCcEEEEEcCeEEcCCHHHHHHHHHHHHHHhc-------c----------------------
Confidence 44678888888753 23479999999998899999999998877664 1
Q ss_pred hhcccccccccccccccCChHhHhcceEEEEEeecCC--Cccc-chhhhhh
Q psy7164 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVN--PTFD-SQTKENM 443 (2307)
Q Consensus 396 ~~~~~~~~~dvreg~~~vk~~dIre~L~~~Vsvki~n--P~Fe-gQTKekL 443 (2307)
+++.....++|++.++. |.|. +|||+.+
T Consensus 76 --------------------~~~~~~p~~vl~i~~~~~~~d~nv~p~K~~v 106 (107)
T cd00329 76 --------------------DDVRRYPVAVLSLKIPPSLVDVNVHPTKEEV 106 (107)
T ss_pred --------------------cCCCCCCEEEEEEEeChHHeeeCCCCCcccc
Confidence 01234567999999999 9999 9999875
No 83
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=97.23 E-value=0.0003 Score=96.87 Aligned_cols=87 Identities=21% Similarity=0.363 Sum_probs=72.8
Q ss_pred CCCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCC----hhhHhhcCC-CCce
Q psy7164 1342 RGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLP----HTKIKKLKP-GDKI 1416 (2307)
Q Consensus 1342 ~~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~----~~K~~~~k~-~~kI 1416 (2307)
....|.|+.|.+.|-+. .+..+++++|..|||+|+.-++..|||||++. . .+|+.+.+. +++|
T Consensus 390 ~~~~l~~~~i~i~G~~~-----------~~~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~-e~~k~~~kv~qAk~~~ipI 457 (981)
T PLN03123 390 ESEFLGDLKVSIVGASK-----------EKVTEWKAKIEEAGGVFHATVKKDTNCLVVCG-ELDDEDAEMRKARRMKIPI 457 (981)
T ss_pred cCCCcCCeEEEEecCCC-----------CcHHHHHHHHHhcCCEEeeeccCCceEEEccH-HhhhcchHHHHHHhcCCCc
Confidence 44689999999999874 56789999999999999999998999999985 3 223333332 7999
Q ss_pred eccChHHHHHHhCCCCCCcCceee
Q psy7164 1417 IKPEWIVDSISAGKLLDHKKYLLY 1440 (2307)
Q Consensus 1417 VkpeWI~DSI~~gklLp~~~Y~l~ 1440 (2307)
|+.+||.||++.++++|+..|.+.
T Consensus 458 VsedwL~ds~~~~~~~p~~~y~~~ 481 (981)
T PLN03123 458 VREDYLVDCFKKKKKLPFDKYKLE 481 (981)
T ss_pred ccHHHHHHHHhccccCcchhhhhc
Confidence 999999999999999999999664
No 84
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.00044 Score=83.61 Aligned_cols=82 Identities=27% Similarity=0.510 Sum_probs=62.2
Q ss_pred CCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEE-----------eccCCccEEEeCCCChhhHhhcC
Q psy7164 1343 GGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHH-----------YESSRTTHIIASNLPHTKIKKLK 1411 (2307)
Q Consensus 1343 ~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~-----------~l~~~vTHIIas~l~~~K~~~~k 1411 (2307)
.+||.|++|||+--. +..-|.=+|..+||.+.- -.+.+|||-||.. |.-|.+ +.
T Consensus 348 ~slFS~f~FyisreV-------------p~dsLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~dr-p~~~~k-ve 412 (591)
T COG5163 348 KSLFSGFKFYISREV-------------PGDSLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDR-PVMKNK-VE 412 (591)
T ss_pred hhhhhceEEEEeccc-------------cchHHHHHHHHcCCcccCchhhccCCchhhccchhhhhhccc-hhhhhh-hc
Confidence 479999999997664 344677788899998742 1234679999976 322222 22
Q ss_pred CCCceeccChHHHHHHhCCCCCCcCceee
Q psy7164 1412 PGDKIIKPEWIVDSISAGKLLDHKKYLLY 1440 (2307)
Q Consensus 1412 ~~~kIVkpeWI~DSI~~gklLp~~~Y~l~ 1440 (2307)
|...|.|+||+|||..|+|.+-..|.+-
T Consensus 413 -grtYiQPQw~fDsiNkG~l~~~~~Y~~G 440 (591)
T COG5163 413 -GRTYIQPQWLFDSINKGKLACVENYCVG 440 (591)
T ss_pred -ceeeechHHHHhhhccccchhhhhcccc
Confidence 6789999999999999999999999764
No 85
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.98 E-value=0.00027 Score=87.55 Aligned_cols=79 Identities=27% Similarity=0.294 Sum_probs=65.5
Q ss_pred HhhcCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhCc--chHHHHHHHhcC---CC--CCccccccCCccc
Q psy7164 1975 FMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGN--KNGLTLYKHCRG---ED--DKELTFEHQRKSV 2047 (2307)
Q Consensus 1975 fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG~--k~G~~L~~~arG---iD--~~~V~~~~~rKSI 2047 (2307)
-|.++||.++||||++++++|.+.||.|++||+.++...|.+.+|. +.+..+|+.++| .+ .+.+.....++++
T Consensus 2 ~~~~~~l~~l~gIg~~~a~~L~~~Gi~t~~dl~~~~~~~L~~~~g~~~~~a~~l~~~a~~~~~~~~~~t~~~l~~~~ks~ 81 (317)
T PRK04301 2 KMKEKDLEDLPGVGPATAEKLREAGYDTVEAIAVASPKELSEAAGIGESTAAKIIEAAREAADIGGFETALEVLERRKNV 81 (317)
T ss_pred CcccccHhhcCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHhcCCCHHHHHHHHHHHHHhhccccCccHHHHHHhhccC
Confidence 3788999999999999999999999999999999999999999994 589999999998 53 4444444456776
Q ss_pred EEEEec
Q psy7164 2048 SAEVNY 2053 (2307)
Q Consensus 2048 s~e~nf 2053 (2307)
+...++
T Consensus 82 ~~~~Tg 87 (317)
T PRK04301 82 GKITTG 87 (317)
T ss_pred CccCCC
Confidence 655444
No 86
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=96.81 E-value=0.002 Score=86.77 Aligned_cols=135 Identities=18% Similarity=0.261 Sum_probs=75.3
Q ss_pred HHHHHHHHhhhhccc-------C----CCCC--eEEEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecc-cc
Q psy7164 87 IFDEILVNACDNKQR-------D----PKMN--CIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT-SS 152 (2307)
Q Consensus 87 i~~EILdNavDe~~r-------~----g~~~--~I~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~a-g~ 152 (2307)
-+.|+|.||.|.... + +... .|.|..+.+...++|.|||.||+-+.... .|+++.. |+
T Consensus 29 flRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~DnGiGMt~edl~~--------~LgtIa~SGt 100 (701)
T PTZ00272 29 FLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLVN--------NLGTIARSGT 100 (701)
T ss_pred hHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEECCCCCCHHHHHH--------Hhhhhhhcch
Confidence 478999999998421 1 1122 45555555567999999999999754322 1233322 20
Q ss_pred cCCCcccccccccccccccccccccCCCCCccccccCCCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCc
Q psy7164 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSP 232 (2307)
Q Consensus 153 k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~ 232 (2307)
+ .|+ . ......-....|++|||.-.+=++++..+|++... ....|.... +|-..-+..
T Consensus 101 ~---------~f~------~-----~~~~~~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~-~~~~~~W~s-~~~g~y~i~ 158 (701)
T PTZ00272 101 K---------AFM------E-----ALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNN-SDESYVWES-SAGGTFTIT 158 (701)
T ss_pred H---------HHH------H-----HhhccCCccccCCCCcceEEEEEeccEEEEEEecC-CCceEEEEE-CCCCcEEEE
Confidence 0 000 0 00011113578999999999999999999988532 233444332 221111111
Q ss_pred cccCCCCCCCcEEEEEeCc
Q psy7164 233 EIKSGSKDDFTKITFTPDL 251 (2307)
Q Consensus 233 ~i~~~~~~~GT~VtF~PD~ 251 (2307)
........+||+|+.....
T Consensus 159 ~~~~~~~~~GT~I~L~Lk~ 177 (701)
T PTZ00272 159 STPESDMKRGTRITLHLKE 177 (701)
T ss_pred eCCCCCCCCCCEEEEEECC
Confidence 1111123689999876543
No 87
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=96.67 E-value=0.0041 Score=83.63 Aligned_cols=165 Identities=20% Similarity=0.160 Sum_probs=94.1
Q ss_pred cchhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC-eEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCccc
Q psy7164 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN-TISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEED 159 (2307)
Q Consensus 81 ~pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g-sIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~ 159 (2307)
+....-+++|+|+||+|. | ++.|.|.+...+- .|.|.|||.||+.+.-+ +++ .=||-||-.+.+|
T Consensus 21 IerPaSVVKELVENSlDA----G-At~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~--------la~-~rHaTSKI~~~~D 86 (638)
T COG0323 21 IERPASVVKELVENSLDA----G-ATRIDIEVEGGGLKLIRVRDNGSGIDKEDLP--------LAL-LRHATSKIASLED 86 (638)
T ss_pred eecHHHHHHHHHhccccc----C-CCEEEEEEccCCccEEEEEECCCCCCHHHHH--------HHH-hhhccccCCchhH
Confidence 345678999999999994 3 5789999986322 69999999999986432 122 2233333333222
Q ss_pred ccccccccccccccccccCCCCCccccccCCCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCCCC
Q psy7164 160 KVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK 239 (2307)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~~~ 239 (2307)
-.--.|-|--|=-++..-..| ++++++........|+.....|...+ .+.....
T Consensus 87 ----------------------L~~I~TlGFRGEAL~SIasVs-rlti~Srt~~~~~~~~~~~~g~~~~~---~~~p~a~ 140 (638)
T COG0323 87 ----------------------LFRIRTLGFRGEALASIASVS-RLTITSRTAEASEGTQIYAEGGGMEV---TVKPAAH 140 (638)
T ss_pred ----------------------HHHhhccCccHHHHHHHHhhh-eeEEEeecCCcCceEEEEecCCcccc---cccCCCC
Confidence 112345566666655555554 45666653222334444444443211 2223344
Q ss_pred CCCcEEEEE------eCcccccccccCHHHHHHHHHHHHHhhccCCCcEEEecc
Q psy7164 240 DDFTKITFT------PDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNG 287 (2307)
Q Consensus 240 ~~GT~VtF~------PD~~iF~~~~f~~d~l~~l~~Rl~dlA~LnpGLkI~lnd 287 (2307)
.-||+|.-. |=...|-. . ....+..|..-+..+|..+|.+.++|.-
T Consensus 141 ~~GTtVeV~dLF~NtPaRrKflk-s-~~~E~~~i~~vv~r~ALahp~I~F~l~~ 192 (638)
T COG0323 141 PVGTTVEVRDLFYNTPARRKFLK-S-EKTEFGHITELINRYALAHPDISFSLSH 192 (638)
T ss_pred CCCCEEEehHhhccChHHHHhhc-c-cHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 569999854 22222211 1 1122233456667789899999998843
No 88
>KOG1929|consensus
Probab=96.63 E-value=0.0016 Score=87.80 Aligned_cols=89 Identities=22% Similarity=0.326 Sum_probs=78.9
Q ss_pred CCCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCCh-hhHhhcCC-CCceecc
Q psy7164 1342 RGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPH-TKIKKLKP-GDKIIKP 1419 (2307)
Q Consensus 1342 ~~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~-~K~~~~k~-~~kIVkp 1419 (2307)
...+|.||.|++.|+-. +...++..++.+|||+++..+++.|+||+.-.-.. +|.+...+ +..||.+
T Consensus 100 ~~p~~~~~~Vc~tgl~~-----------~eK~ei~~~v~k~gg~~~~~L~s~v~~~~~~~~~~~~kYe~al~wn~~v~~~ 168 (811)
T KOG1929|consen 100 KCPGFFGLKVCLTGLSG-----------DEKSEIKILVPKHGGTLHRSLSSDVNSLKILPEVKTEKYEQALKWNIPVVSD 168 (811)
T ss_pred cCCcccceEEEecccch-----------HHHHHHHHHhhhcccEEehhhhhhhheeeeccccchHHHHHHHhhCCccccH
Confidence 35799999999999987 78999999999999999999999988887766444 77777665 7899999
Q ss_pred ChHHHHHHhCCCCCCcCceeee
Q psy7164 1420 EWIVDSISAGKLLDHKKYLLYT 1441 (2307)
Q Consensus 1420 eWI~DSI~~gklLp~~~Y~l~~ 1441 (2307)
+|+.||+..+..++..+|.+..
T Consensus 169 ~w~~~s~~~~~~~~~~~~e~~~ 190 (811)
T KOG1929|consen 169 DWLFDSIEKTAVLETKPYEGAP 190 (811)
T ss_pred HHHhhhhccccccccccccccc
Confidence 9999999999999999999877
No 89
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=96.16 E-value=0.012 Score=58.04 Aligned_cols=48 Identities=29% Similarity=0.428 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcccccc
Q psy7164 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVEH 133 (2307)
Q Consensus 84 L~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~ 133 (2307)
|..++.|+|+||++.... ....|.|.+..+++ .|.|.|+|.|+|....
T Consensus 1 l~~~~~~ll~Na~~~~~~--~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~ 50 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPE--GGGRITISVERDGDHLEIRVEDNGPGIPEEDL 50 (103)
T ss_pred CHHHHHHHHHHHHHhCcC--CCCeEEEEEEecCCEEEEEEEeCCCCCCHHHH
Confidence 467899999999997542 14568888776543 6888999999986543
No 90
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=96.07 E-value=0.011 Score=59.36 Aligned_cols=87 Identities=22% Similarity=0.329 Sum_probs=58.7
Q ss_pred chhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCccc
Q psy7164 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEED 159 (2307)
Q Consensus 82 pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~ 159 (2307)
.-|..++.|+++|+++.... ...|.|.+..+++ .|.|.|+|+|++....+. +|..++.+
T Consensus 4 ~~l~~~~~~l~~n~~~~~~~---~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~--------~~~~~~~~-------- 64 (111)
T smart00387 4 DRLRQVLSNLLDNAIKYTPE---GGRITVTLERDGDHLEITVEDNGPGIPPEDLEK--------IFEPFFRT-------- 64 (111)
T ss_pred HHHHHHHHHHHHHHHhcCCC---CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHH--------HhcCeEEC--------
Confidence 35788999999999997542 3567777776544 688999999998653321 12121111
Q ss_pred ccccccccccccccccccCCCCCccccccCCCcccccccccccceeEEEE
Q psy7164 160 KVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209 (2307)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGVGasvvNAlS~~f~Vev 209 (2307)
. ......+.+|+|+++|+.+++.+...+
T Consensus 65 -----------------~-----~~~~~~~~~g~gl~~~~~~~~~~~g~~ 92 (111)
T smart00387 65 -----------------D-----GRSRKIGGTGLGLSIVKKLVELHGGEI 92 (111)
T ss_pred -----------------C-----CCCCCCCcccccHHHHHHHHHHcCCEE
Confidence 0 022445668999999999999985543
No 91
>PTZ00130 heat shock protein 90; Provisional
Probab=95.98 E-value=0.012 Score=79.82 Aligned_cols=134 Identities=22% Similarity=0.308 Sum_probs=75.3
Q ss_pred HHHHHHHhhhhcc--c-----C------CCCCeEEEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccC
Q psy7164 88 FDEILVNACDNKQ--R-----D------PKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154 (2307)
Q Consensus 88 ~~EILdNavDe~~--r-----~------g~~~~I~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~ 154 (2307)
+.|+|.||.|... | + +..-.|.|..+.+.++++|.|||.||--+.... -++++-.|
T Consensus 93 LRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI~DnGIGMT~eEl~~--------nLgTIA~S--- 161 (814)
T PTZ00130 93 LRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKEDLIN--------NLGTIAKS--- 161 (814)
T ss_pred eehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEEEECCCCCCHHHHHH--------Hhhhhccc---
Confidence 5699999999852 1 1 123367777776678999999999998764321 12222222
Q ss_pred CCcccccccccccccccccccccCCCCCccccccCCCcccccccccccceeEEEEEeecccEEEEEEeec-CCCcCCCcc
Q psy7164 155 NDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKD-NMSKVTSPE 233 (2307)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~-g~~~~~~~~ 233 (2307)
+. ..|+ ....+. ..-.--.|++|||.-.+=+++...+|++... ....|. |+- |-..-+...
T Consensus 162 ---gt--~~F~------~~l~~~----~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~-~~~~~~--W~s~g~g~y~I~e 223 (814)
T PTZ00130 162 ---GT--SNFL------EAISKS----GGDMSLIGQFGVGFYSAFLVADKVIVYTKNN-NDEQYI--WESTADAKFTIYK 223 (814)
T ss_pred ---cc--HHHH------HHhhcc----CCCcccccccccchhheeeecCEEEEEEcCC-CCceEE--EEECCCCcEEEEE
Confidence 00 0011 000000 1113468999999988888999999988632 233344 432 211111111
Q ss_pred cc-CCCCCCCcEEEEEeC
Q psy7164 234 IK-SGSKDDFTKITFTPD 250 (2307)
Q Consensus 234 i~-~~~~~~GT~VtF~PD 250 (2307)
.. ..+..+||+|+..+.
T Consensus 224 ~~~~~~~~rGT~I~LhLk 241 (814)
T PTZ00130 224 DPRGSTLKRGTRISLHLK 241 (814)
T ss_pred CCCCCCCCCCcEEEEEEC
Confidence 11 112368999998654
No 92
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.64 E-value=0.0075 Score=74.65 Aligned_cols=74 Identities=24% Similarity=0.278 Sum_probs=62.2
Q ss_pred CCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhCc--chHHHHHHHhc---CCC--CCccccccCCcccEEEEec
Q psy7164 1981 LSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGN--KNGLTLYKHCR---GED--DKELTFEHQRKSVSAEVNY 2053 (2307)
Q Consensus 1981 V~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG~--k~G~~L~~~ar---GiD--~~~V~~~~~rKSIs~e~nf 2053 (2307)
|.++||||++++++|.+.||.|+.||+.++.+.|.+.+|. +.+..++..++ |.+ ++.+.....+++++...++
T Consensus 1 l~~i~gig~~~~~~L~~~Gi~ti~dl~~~~~~~L~~~~g~~~~~a~~l~~~~~~~~~~~~~~t~~~~~~~~~s~~~~~Tg 80 (310)
T TIGR02236 1 LEDLPGVGPATAEKLREAGYDTFEAIAVASPKELSEIAGISEGTAAKIIQAARKAADLGGFETADDVLERRKTIGKITTG 80 (310)
T ss_pred CcccCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHhccCCCHHHHHHHHHHHHHHhhccCCCCHHHHHHhhccCCeecCC
Confidence 4689999999999999999999999999999999999994 36999999998 887 6666555567777776655
Q ss_pred C
Q psy7164 2054 G 2054 (2307)
Q Consensus 2054 g 2054 (2307)
.
T Consensus 81 ~ 81 (310)
T TIGR02236 81 S 81 (310)
T ss_pred C
Confidence 4
No 93
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=95.21 E-value=0.057 Score=58.60 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=35.6
Q ss_pred chhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcc
Q psy7164 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIP 129 (2307)
Q Consensus 82 pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIP 129 (2307)
..+..++.|++.||+.+.........|.|.+...++ .++|.|+|.|||
T Consensus 38 ~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~~~~~i~I~D~G~gi~ 87 (137)
T TIGR01925 38 TDIKTAVSEAVTNAIIHGYEENCEGVVYISATIEDHEVYITVRDEGIGIE 87 (137)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeCCEEEEEEEEcCCCcC
Confidence 357788999999999754322234578888776544 588999999998
No 94
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=95.18 E-value=0.033 Score=71.30 Aligned_cols=47 Identities=23% Similarity=0.401 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcccccc
Q psy7164 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVEH 133 (2307)
Q Consensus 84 L~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~ 133 (2307)
|..++.++|+||++... ....|.|.+..+++ .|+|.|||.|||-+..
T Consensus 354 l~~~~~nll~Nai~~~~---~~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~ 402 (457)
T TIGR01386 354 FRRAISNLLSNALRHTP---DGGTITVRIERRSDEVRVSVSNPGPGIPPEHL 402 (457)
T ss_pred HHHHHHHHHHHHHHcCC---CCceEEEEEEecCCEEEEEEEeCCCCCCHHHH
Confidence 55667777777776532 23579998887655 6899999999997643
No 95
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=94.90 E-value=0.071 Score=60.10 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=38.2
Q ss_pred chhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcccc
Q psy7164 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVV 131 (2307)
Q Consensus 82 pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd 131 (2307)
..+.-++.|++.||+.+...+.....|.|.+...++ .|.|+|+|.||+.+
T Consensus 41 ~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~ 92 (161)
T PRK04069 41 EDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYEDRLEIVVADNGVSFDYE 92 (161)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEECCEEEEEEEECCcCCChH
Confidence 457779999999999987644334567777765443 88899999999864
No 96
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=94.87 E-value=0.093 Score=55.97 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDK 160 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~ 160 (2307)
-+.-++.|++.||+.+.........|.|.+..+.+ .|+|+|+|.|+|....+.....
T Consensus 31 ~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~~~~--------------------- 89 (125)
T PF13581_consen 31 DLELAVSEALTNAVEHGYPGDPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQPDPW--------------------- 89 (125)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCcccc---------------------
Confidence 36678999999999987543333567777655433 8889999999887533221000
Q ss_pred cccccccccccccccccCCCCCccccccCCCcccccccccccceeEEEEEeecccEEEEEE
Q psy7164 161 VTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQV 221 (2307)
Q Consensus 161 ~~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~ 221 (2307)
. .......|.|+.++..|+..+.+ . ...|...+..
T Consensus 90 ----------------~-------~~~~~~~G~Gl~li~~l~D~~~~-~--~~~gn~v~l~ 124 (125)
T PF13581_consen 90 ----------------E-------PDSLREGGRGLFLIRSLMDEVDY-R--EDGGNTVTLR 124 (125)
T ss_pred ----------------c-------CCCCCCCCcCHHHHHHHHcEEEE-E--CCCeEEEEEE
Confidence 0 02345579999999999999988 3 2345555443
No 97
>KOG1978|consensus
Probab=94.85 E-value=0.039 Score=72.58 Aligned_cols=159 Identities=17% Similarity=0.205 Sum_probs=94.9
Q ss_pred ccchhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcccccccCCCccccEEEEEee-cccccCCC
Q psy7164 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVEHKDEKMFVPTMIFGHL-LTSSNYND 156 (2307)
Q Consensus 80 ~~pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L-~ag~k~~~ 156 (2307)
.+.+|...+.|+|+||+|. | ++.|.|.+.. -| +|+|.|||-||...--+ + ++.- ||+ |-
T Consensus 17 vI~sl~sAVKELvENSiDA----G-AT~I~I~~kd-yG~d~IEV~DNG~GI~~~n~~--~-------l~lkh~TS-Ki-- 78 (672)
T KOG1978|consen 17 VITSLVSAVKELVENSIDA----G-ATAIDIKVKD-YGSDSIEVSDNGSGISATDFE--G-------LALKHTTS-KI-- 78 (672)
T ss_pred eeccHHHHHHHHHhcCccc----C-CceeeEecCC-CCcceEEEecCCCCCCccchh--h-------hhhhhhhh-cc--
Confidence 4578999999999999995 2 5678887753 23 99999999999753221 1 2222 222 11
Q ss_pred cccccccccccccccccccccCCCCCccccccCCCcccccccccccceeEEEEEe-ecccEEEEEEeecCCCcCCCcccc
Q psy7164 157 EEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSC-SEYKKSFKQVWKDNMSKVTSPEIK 235 (2307)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGVGasvvNAlS~~f~Vev~~-~~~gk~y~q~f~~g~~~~~~~~i~ 235 (2307)
..|-|-...+|-|--|--++...|+|..+..+... ..-|-.|... +.|-- . ...
T Consensus 79 --------------------~~f~Dl~~l~T~GFRGEALSsLCa~~dv~I~Trt~~~~vgt~l~~D-h~G~I-~---~k~ 133 (672)
T KOG1978|consen 79 --------------------VSFADLAVLFTLGFRGEALSSLCALGDVMISTRSHSAKVGTRLVYD-HDGHI-I---QKK 133 (672)
T ss_pred --------------------cchhhhhhhhhhhhHHHHHHhhhhccceEEEEeeccCccceeEEEc-cCCce-e---eec
Confidence 33555556678888888888888898888777652 1224444432 12211 1 222
Q ss_pred CCCCCCCcEEEEEeCcccccccc---------cCHHHHHHHHHHHHHhhccCCCcEEEe
Q psy7164 236 SGSKDDFTKITFTPDLTKFKMTS---------LDKDMVDLITRRAYDAAASTKDVKVFL 285 (2307)
Q Consensus 236 ~~~~~~GT~VtF~PD~~iF~~~~---------f~~d~l~~l~~Rl~dlA~LnpGLkI~l 285 (2307)
.+....||+|.-. ..|.+-. +..+.-. |..-+.-.|-+++|+++..
T Consensus 134 ~~ar~~GTTV~v~---~LF~tLPVR~kef~r~~Kref~k-~i~li~~y~li~~~ir~~~ 188 (672)
T KOG1978|consen 134 PVARGRGTTVMVR---QLFSTLPVRRKEFQRNIKRKFVK-LISLIQAYALISTAIKFLV 188 (672)
T ss_pred cccCCCCCEEEHh---hhcccCCCchHHhhcchhhhhhh-HHhhHHHHHhhcccceeee
Confidence 3456789999854 3344321 2222111 2223344566788888865
No 98
>PRK10604 sensor protein RstB; Provisional
Probab=94.63 E-value=0.071 Score=68.92 Aligned_cols=44 Identities=25% Similarity=0.450 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCccccc
Q psy7164 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVE 132 (2307)
Q Consensus 84 L~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~ 132 (2307)
+..++..+|.||+... ...|.|.+..+++ .|+|+|||.|||.+.
T Consensus 320 l~~vl~NLl~NAik~~-----~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~ 365 (433)
T PRK10604 320 MERVLDNLLNNALRYA-----HSRVRVSLLLDGNQACLIVEDDGPGIPPEE 365 (433)
T ss_pred HHHHHHHHHHHHHHhC-----CCeEEEEEEEECCEEEEEEEEcCCCCCHHH
Confidence 5667777777777643 2467777765444 688999999999764
No 99
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=94.62 E-value=0.047 Score=72.22 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=39.5
Q ss_pred chhHHHHHHHHHHhhhhcccCC-CCCeEEEEEEccCC--eEEEEeCCCCcccccc
Q psy7164 82 PGLYKIFDEILVNACDNKQRDP-KMNCIKITVNQETN--TISVWNNGKGIPVVEH 133 (2307)
Q Consensus 82 pGL~~i~~EILdNavDe~~r~g-~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~ 133 (2307)
..|+.++.++|+||++...+.+ ....|.|.+..+++ .|+|.|||.|||.+..
T Consensus 431 ~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 485 (545)
T PRK15053 431 TEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGDDVVIEVADQGCGVPESLR 485 (545)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEECCCEEEEEEEeCCCCcCHHHH
Confidence 3588899999999999864322 23578888876554 5899999999997643
No 100
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=94.62 E-value=0.027 Score=75.30 Aligned_cols=81 Identities=23% Similarity=0.405 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhhhccc-CCCCCeEEEEEEccCC--eEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccc
Q psy7164 86 KIFDEILVNACDNKQR-DPKMNCIKITVNQETN--TISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVT 162 (2307)
Q Consensus 86 ~i~~EILdNavDe~~r-~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~ 162 (2307)
.+|..+|-|-+||+.+ ++.++.|.|....+.. .++|+|||+|||-+.- |.||..++++
T Consensus 774 ~LieQVLiNLleNA~Kyap~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~--------~~IFD~F~r~----------- 834 (890)
T COG2205 774 PLIEQVLINLLENALKYAPPGSEIRINAGVERENVVFSVIDEGPGIPEGEL--------ERIFDKFYRG----------- 834 (890)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEEEEEecceEEEEEEeCCCCCChhHH--------HHhhhhhhcC-----------
Confidence 4667777777777654 4677888888766544 6789999999998753 3477666666
Q ss_pred cccccccccccccccCCCCCccccccCCCccccccccccccee
Q psy7164 163 GVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF 205 (2307)
Q Consensus 163 ~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGVGasvvNAlS~~f 205 (2307)
+|+++ ...-|+|+++|-.+=+-.
T Consensus 835 --------------~~~~~------~~G~GLGLsIc~~iv~ah 857 (890)
T COG2205 835 --------------NKESA------TRGVGLGLAICRGIVEAH 857 (890)
T ss_pred --------------CCCCC------CCCccccHHHHHHHHHHc
Confidence 66654 233488999987765543
No 101
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=94.57 E-value=0.028 Score=53.25 Aligned_cols=50 Identities=28% Similarity=0.416 Sum_probs=43.8
Q ss_pred CCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhh--hCcchHHHHHHHhc
Q psy7164 1982 SDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNE--VGNKNGLTLYKHCR 2031 (2307)
Q Consensus 1982 ~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~--fG~k~G~~L~~~ar 2031 (2307)
.++||||++++.+|.+.|+.|+.||+..+.+.|... +|++.+.++...++
T Consensus 8 ~~I~Gig~~~a~~L~~~G~~t~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~ 59 (60)
T PF14520_consen 8 LSIPGIGPKRAEKLYEAGIKTLEDLANADPEELAEIPGIGEKTAEKIIEAAR 59 (60)
T ss_dssp HTSTTCHHHHHHHHHHTTCSSHHHHHTSHHHHHHTSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHhcCCCcHHHHHcCCHHHHhcCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999999999999999887 77778888776654
No 102
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=94.43 E-value=0.048 Score=70.08 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHhhhhcccCC-CCCeEEEEEEccCC--eEEEEeCCCCccccccc
Q psy7164 84 LYKIFDEILVNACDNKQRDP-KMNCIKITVNQETN--TISVWNNGKGIPVVEHK 134 (2307)
Q Consensus 84 L~~i~~EILdNavDe~~r~g-~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~~ 134 (2307)
|.+++.++|.||++.....+ ....|.|.+..+++ .++|.|||.|||.+..+
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~ 441 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTALNGDLIVVSILDSGPGIPQDLRY 441 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHH
Confidence 78899999999999753222 23457777665444 78999999999987553
No 103
>cd01701 PolY_Rev1 DNA polymerase Rev1. Rev1 is a translesion synthesis (TLS) polymerase found in eukaryotes. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Rev1 has both structural and enzymatic roles. Structurally, it is believed to interact with other nonclassical polymerases and replication machinery to act as a scaffold. Enzymatically, it catalyzes the specific insertion of dCMP opposite abasic sites. Rev1 interacts with the Rev7 subunit of the B-family TLS polymerase Pol zeta (Rev3/Rev7). Rev1 is known to actively promote the introduction of mutations, potentially making it a significant target for cancer treatment.
Probab=94.34 E-value=0.018 Score=73.98 Aligned_cols=36 Identities=33% Similarity=0.641 Sum_probs=33.1
Q ss_pred hHHHhhhcccchhhhcccchhhhhhhHHHhhhccCC
Q psy7164 1197 FLGEFYNKSRLHHLSTMGSMFKQYVNQLISLQQDKQ 1232 (2307)
Q Consensus 1197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1232 (2307)
|+..||.|||||||+||+..+++|+.++-++++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (404)
T cd01701 1 FLENFFKHSRLHHISTWKARLKDFFRELSNGSKEAD 36 (404)
T ss_pred ChhHHhhhhhHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 789999999999999999999999999888887763
No 104
>PRK03660 anti-sigma F factor; Provisional
Probab=94.30 E-value=0.15 Score=55.96 Aligned_cols=48 Identities=25% Similarity=0.291 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPV 130 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPv 130 (2307)
-+..++.|++.||+.+.........|.|.+...++ .|+|.|+|.|||.
T Consensus 39 ~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 39 EIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIEEEELEITVRDEGKGIED 88 (146)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEECCCEEEEEEEEccCCCCh
Confidence 46678999999999775432222567777765444 6889999999984
No 105
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=94.21 E-value=0.14 Score=57.87 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVE 132 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~ 132 (2307)
.+.-++.|++.||+.++...+....|.|.+..+++ .|+|+|+|.|++...
T Consensus 42 ~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~ 93 (159)
T TIGR01924 42 DLKIAVSEACTNAVKHAYKEGENGEIGISFHIYEDRLEIIVSDQGDSFDMDT 93 (159)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeCCEEEEEEEEcccccCchh
Confidence 46679999999999987654444578777765555 677999999998653
No 106
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=94.17 E-value=0.092 Score=68.58 Aligned_cols=77 Identities=22% Similarity=0.298 Sum_probs=52.9
Q ss_pred hhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEE
Q psy7164 44 HILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISV 121 (2307)
Q Consensus 44 hVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV 121 (2307)
+=|+++.|--=..+......||+-... -|.+++--+|.||+|... +..-..|.|.+-.+++ .|+|
T Consensus 470 ~~R~~~~~~~l~~~~~~~~~~V~~~~i------------RLeQVLvNLl~NALDA~~-~~~~~~i~i~~~~~~~~v~l~V 536 (603)
T COG4191 470 RGRLRAAGVELELDLPDAPLWVMANEI------------RLEQVLVNLLQNALDAMA-GQEDRRLSIRAQREGGQVVLTV 536 (603)
T ss_pred HHhhhccCceeeccCCCCCceeecchh------------hHHHHHHHHHHHHHHHhc-CCCCCeeEEEEEecCCeEEEEE
Confidence 345555553322222223567775332 388899999999999753 3455689999987766 8899
Q ss_pred EeCCCCcccccc
Q psy7164 122 WNNGKGIPVVEH 133 (2307)
Q Consensus 122 ~DnGrGIPvd~~ 133 (2307)
.|||.|||.+.-
T Consensus 537 rDnGpGi~~e~~ 548 (603)
T COG4191 537 RDNGPGIAPEAL 548 (603)
T ss_pred ccCCCCCCHHHH
Confidence 999999998853
No 107
>KOG1979|consensus
Probab=94.15 E-value=0.15 Score=65.76 Aligned_cols=158 Identities=22% Similarity=0.229 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCccccc
Q psy7164 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKV 161 (2307)
Q Consensus 84 L~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~ 161 (2307)
-+.++.|+|.||+|.- .+.|.|.+.. +| -+.|.|||.||--+.-+ ++|.-++-+|.
T Consensus 28 P~NAlKEliENSLDA~-----ST~I~V~vk~-GGLKLlQisDnG~GI~reDl~---------ilCeRftTSKL------- 85 (694)
T KOG1979|consen 28 PVNALKELIENSLDAN-----STSIDVLVKD-GGLKLLQISDNGSGIRREDLP---------ILCERFTTSKL------- 85 (694)
T ss_pred hHHHHHHHHhccccCC-----CceEEEEEec-CCeEEEEEecCCCccchhhhH---------HHHHHhhhhhc-------
Confidence 4579999999999953 4689999865 45 67788999999754221 23333333222
Q ss_pred ccccccccccccccccCCCCCccccccCCCcccccccccccc--eeEEEEEeecccEEEEEEeecCCCcCCCccccCCCC
Q psy7164 162 TGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSS--KFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSK 239 (2307)
Q Consensus 162 ~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGVGasvvNAlS~--~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~~~ 239 (2307)
.||.|-.--.|=|--|--++ -+|- +.+|++....+.-.|+..|.+|.-...+ ..|.+
T Consensus 86 ---------------~kFEDL~~lsTyGFRGEALA---SiShVA~VtV~TK~~~~~cayrasY~DGkm~~~p---KpcAg 144 (694)
T KOG1979|consen 86 ---------------TKFEDLFSLSTYGFRGEALA---SISHVAHVTVTTKTAEGKCAYRASYRDGKMIATP---KPCAG 144 (694)
T ss_pred ---------------chhHHHHhhhhcCccHHHHh---hhhheeEEEEEEeecCceeeeEEEeeccccccCC---CCccC
Confidence 23333222233344443322 1222 2445555445566799999999643222 34567
Q ss_pred CCCcEEEEEeCcccc-ccc----cc--CHHHHHHHHHHHHHhhccCCCcEEEecc
Q psy7164 240 DDFTKITFTPDLTKF-KMT----SL--DKDMVDLITRRAYDAAASTKDVKVFLNG 287 (2307)
Q Consensus 240 ~~GT~VtF~PD~~iF-~~~----~f--~~d~l~~l~~Rl~dlA~LnpGLkI~lnd 287 (2307)
+.||.|+-. ..| ++. .+ ..|-...|..-+-..|.-||++.+.+.-
T Consensus 145 k~GT~I~ve---dLFYN~~~Rrkal~~~~EE~~ki~dlv~ryAIHn~~VsFs~rk 196 (694)
T KOG1979|consen 145 KQGTIITVE---DLFYNMPTRRKALRNHAEEYRKIMDLVGRYAIHNPRVSFSLRK 196 (694)
T ss_pred CCceEEEeh---HhhccCHHHHHHhcCcHHHHHHHHHHHHHHheeCCCcceEEee
Confidence 899999965 223 221 11 1122222334445568889999888753
No 108
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=94.08 E-value=0.086 Score=67.89 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVEH 133 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~ 133 (2307)
-|.+++..+|+||++... ....|.|.+..+++ .|+|.|||.|||-+..
T Consensus 317 ~l~~vl~NLl~NAik~~~---~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 366 (430)
T PRK11006 317 QLRSAISNLVYNAVNHTP---EGTHITVRWQRVPQGAEFSVEDNGPGIAPEHI 366 (430)
T ss_pred HHHHHHHHHHHHHHhcCC---CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHH
Confidence 477888899999988642 23467777765444 6999999999997654
No 109
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=93.96 E-value=0.065 Score=69.18 Aligned_cols=46 Identities=15% Similarity=0.344 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCccccc
Q psy7164 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVE 132 (2307)
Q Consensus 84 L~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~ 132 (2307)
+.+++..+|+||+.... ....|.|.+..+++ .|+|.|||.|||-+.
T Consensus 353 l~qvl~nll~NAi~~~~---~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~ 400 (466)
T PRK10549 353 LMQLFNNLLENSLRYTD---SGGSLHISAEQRDKTLRLTFADSAPGVSDEQ 400 (466)
T ss_pred HHHHHHHHHHHHHHhCC---CCCEEEEEEEEcCCEEEEEEEecCCCcCHHH
Confidence 66778888888887643 23478888877655 578899999999653
No 110
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=93.93 E-value=0.077 Score=69.71 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVEH 133 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~ 133 (2307)
-|.+++.++|+||++... .+....|.|.+..+++ .|+|.|||.|||.+..
T Consensus 433 ~l~~vl~nLl~NAi~~~~-~~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~ 484 (542)
T PRK11086 433 ELITILGNLIENALEAVG-GEEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEI 484 (542)
T ss_pred HHHHHHHHHHHHHHHHhh-cCCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHH
Confidence 478899999999998743 2334578888877655 6889999999997643
No 111
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=93.89 E-value=0.14 Score=60.94 Aligned_cols=51 Identities=29% Similarity=0.431 Sum_probs=41.0
Q ss_pred cchhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC----eEEEEeCCCCcccc
Q psy7164 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN----TISVWNNGKGIPVV 131 (2307)
Q Consensus 81 ~pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g----sIsV~DnGrGIPvd 131 (2307)
.-.|-=+|.|++.||+-.+.-.+....|.|++..+++ ..+|||||.|+|++
T Consensus 120 A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 120 AVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 3568889999999999987544456788888776544 68999999999986
No 112
>PRK10364 sensor protein ZraS; Provisional
Probab=93.78 E-value=0.1 Score=67.78 Aligned_cols=47 Identities=26% Similarity=0.374 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVE 132 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~ 132 (2307)
-|.+++..+|+||++... ....|.|.+..+++ .|+|.|||.|||.+.
T Consensus 348 ~l~~il~NLl~NA~k~~~---~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~ 396 (457)
T PRK10364 348 RLTQVLLNLYLNAIQAIG---QHGVISVTASESGAGVKISVTDSGKGIAADQ 396 (457)
T ss_pred HHHHHHHHHHHHHHHhcC---CCCeEEEEEEEeCCeEEEEEEECCCCCCHHH
Confidence 377788888888888642 24578888876544 789999999999764
No 113
>PF13438 DUF4113: Domain of unknown function (DUF4113)
Probab=93.68 E-value=0.05 Score=50.39 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhcCCCCccEEEeeeecc---Ccccccccccc-hhhhhhc
Q psy7164 2172 SQILKEVLFIVNKLKVDPVELRGIGIQVS---KLEHQSKTLAT-IDTFFTN 2218 (2307)
Q Consensus 2172 ~~I~~e~~~L~r~~g~~~~~lRgIGIq~s---kL~~~S~~~tT-id~f~~~ 2218 (2307)
+.||+++|.|+++||.+...+...|+... +.+..|++||| |++++.+
T Consensus 2 ~~LM~~iD~iN~r~G~~~i~~a~~g~~~~W~mr~~~~Sp~yTT~w~el~~v 52 (52)
T PF13438_consen 2 QRLMQAIDAINRRFGRGTIRLASQGFRRSWKMRREMLSPRYTTRWDELPVV 52 (52)
T ss_pred hHHHHHHHHHHHhcCCCEEEEeECCCCcchHHHHHhcCCCCcCCHHHcccC
Confidence 57999999999999999999999998654 77889999999 9999764
No 114
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=93.62 E-value=0.12 Score=67.12 Aligned_cols=50 Identities=22% Similarity=0.342 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVE 132 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~ 132 (2307)
=+..|+--+||||.|...+......|.+.|..+++ .|.|.|||.|||.+.
T Consensus 427 ~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~ 478 (537)
T COG3290 427 DLVTILGNLIDNALEALLAPEENKEIELSLSDRGDELVIEVADTGPGIPPEV 478 (537)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecCCEEEEEEeCCCCCCChHH
Confidence 47789999999999998753345689999987655 789999999999764
No 115
>KOG3548|consensus
Probab=93.55 E-value=0.055 Score=72.30 Aligned_cols=88 Identities=20% Similarity=0.271 Sum_probs=62.2
Q ss_pred CCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEE-eccCCc-------------------------cEE
Q psy7164 1344 GIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHH-YESSRT-------------------------THI 1397 (2307)
Q Consensus 1344 ~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~-~l~~~v-------------------------THI 1397 (2307)
.||.||+|.+.+-+. ++..++.-|..|||.+.. .|..-- -.+
T Consensus 924 niFd~cvF~lTsa~~------------sd~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalL 991 (1176)
T KOG3548|consen 924 NIFDGCVFMLTSANR------------SDSASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQALL 991 (1176)
T ss_pred chhcceeEEEecccc------------chhhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccceeE
Confidence 699999999988874 677888888899998643 222101 122
Q ss_pred EeCCCC-hhhHhh-cCCCCceeccChHHHHHHhCCCCCCcCceeeecC
Q psy7164 1398 IASNLP-HTKIKK-LKPGDKIIKPEWIVDSISAGKLLDHKKYLLYTGT 1443 (2307)
Q Consensus 1398 Ias~l~-~~K~~~-~k~~~kIVkpeWI~DSI~~gklLp~~~Y~l~~~~ 1443 (2307)
|+.... .-|+-+ +-.|+.-|++.||-+|+++++++++.+|||-.|+
T Consensus 992 Isdth~Rt~KYLeaLA~giPcVh~~fI~aC~e~nr~Vdy~~YLLpsGy 1039 (1176)
T KOG3548|consen 992 ISDTHYRTHKYLEALARGIPCVHNTFIQACGEQNRCVDYTDYLLPSGY 1039 (1176)
T ss_pred eehhhhHHHHHHHHHHcCCCcccHHHHHHHHhccccccchhhcccCcc
Confidence 222111 112111 1128999999999999999999999999998886
No 116
>PRK09303 adaptive-response sensory kinase; Validated
Probab=93.39 E-value=0.091 Score=66.92 Aligned_cols=48 Identities=23% Similarity=0.388 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEc-cCC--eEEEEeCCCCcccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQ-ETN--TISVWNNGKGIPVVEH 133 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~-d~g--sIsV~DnGrGIPvd~~ 133 (2307)
-|.+++..+|+||+.... ....|.|.+.. +++ .|+|.|||.|||-+..
T Consensus 272 ~l~qvl~NLl~NAik~~~---~~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~ 322 (380)
T PRK09303 272 RIRQVLLNLLDNAIKYTP---EGGTITLSMLHRTTQKVQVSICDTGPGIPEEEQ 322 (380)
T ss_pred HHHHHHHHHHHHHHhcCC---CCceEEEEEEecCCCEEEEEEEEcCCCCCHHHH
Confidence 366788888888887542 23467777633 233 5899999999997643
No 117
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=93.33 E-value=0.13 Score=66.49 Aligned_cols=52 Identities=35% Similarity=0.429 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcccccccCCCccc
Q psy7164 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVEHKDEKMFV 140 (2307)
Q Consensus 84 L~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~~~~~~~~ 140 (2307)
+..|+.|.+.||+-++. .+.|+|++...+| .++|+|||.|||-..+ .+|.|.
T Consensus 482 lLqIvREAlsNa~KHa~----As~i~V~~~~~~g~~~~~VeDnG~Gi~~~~e-~~gHyG 535 (574)
T COG3850 482 LLQIVREALSNAIKHAQ----ASEIKVTVSQNDGQVTLTVEDNGVGIDEAAE-PSGHYG 535 (574)
T ss_pred HHHHHHHHHHHHHHhcc----cCeEEEEEEecCCeEEEEEeeCCcCCCCccC-CCCCcc
Confidence 56799999999999874 4689999987545 8889999999998733 344543
No 118
>PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria []. Many members of the family are annotated as being putative mitomycin resistance proteins but this could not be confirmed.
Probab=92.99 E-value=0.054 Score=55.73 Aligned_cols=45 Identities=24% Similarity=0.392 Sum_probs=38.6
Q ss_pred CCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhCcchHH
Q psy7164 1980 PLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGL 2024 (2307)
Q Consensus 1980 PV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG~k~G~ 2024 (2307)
.+.+|||||+++++-|..+||+++.||+..++..|-.++-..+|.
T Consensus 13 ~L~~iP~IG~a~a~DL~~LGi~s~~~L~g~dP~~Ly~~lc~~~G~ 57 (93)
T PF11731_consen 13 DLTDIPNIGKATAEDLRLLGIRSPADLKGRDPEELYERLCALTGQ 57 (93)
T ss_pred HHhcCCCccHHHHHHHHHcCCCCHHHHhCCCHHHHHHHHHHHcCC
Confidence 357899999999999999999999999999998887777644443
No 119
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=92.95 E-value=0.14 Score=70.41 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVEH 133 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~ 133 (2307)
-|.+++..+|+||++... ....|.|.+..+++ .|+|.|||.|||.+..
T Consensus 597 ~L~~il~NLI~NAik~s~---~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~ 646 (703)
T TIGR03785 597 LIAQMLDKLVDNAREFSP---EDGLIEVGLSQNKSHALLTVSNEGPPLPEDMG 646 (703)
T ss_pred HHHHHHHHHHHHHHHHCC---CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHH
Confidence 467788888888887643 23458888876555 5899999999997654
No 120
>PRK09835 sensor kinase CusS; Provisional
Probab=92.92 E-value=0.16 Score=65.73 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVE 132 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~ 132 (2307)
-|.+++.++|+||+.... ....|.|.+..+++ .|+|.|||.|||.+.
T Consensus 375 ~l~~vl~nll~Na~~~~~---~~~~I~i~~~~~~~~~~i~v~d~G~gi~~~~ 423 (482)
T PRK09835 375 MLRRAISNLLSNALRYTP---AGEAITVRCQEVDHQVQLVVENPGTPIAPEH 423 (482)
T ss_pred HHHHHHHHHHHHHHhcCC---CCCeEEEEEEEeCCEEEEEEEECCCCcCHHH
Confidence 477788888888887542 23468777765444 689999999999764
No 121
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=92.54 E-value=0.18 Score=63.12 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcccccc
Q psy7164 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVEH 133 (2307)
Q Consensus 84 L~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~ 133 (2307)
+..++..+|+||+.... ....|.|.+..+++ .|+|+|||.|||.+..
T Consensus 248 l~~il~nLi~NA~k~~~---~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~ 296 (356)
T PRK10755 248 LRLLLRNLVENAHRYSP---EGSTITIKLSQEDGGAVLAVEDEGPGIDESKC 296 (356)
T ss_pred HHHHHHHHHHHHHhhCC---CCCcEEEEEEEcCCEEEEEEEECCCCCCHHHH
Confidence 55677788888876532 23568888866554 6899999999997643
No 122
>KOG1929|consensus
Probab=92.38 E-value=0.13 Score=70.30 Aligned_cols=88 Identities=15% Similarity=0.205 Sum_probs=74.4
Q ss_pred CCCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCChhhHhhcCC-CCceeccC
Q psy7164 1342 RGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKP-GDKIIKPE 1420 (2307)
Q Consensus 1342 ~~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~K~~~~k~-~~kIVkpe 1420 (2307)
..++|.||+|++.++.. +.++-|..++..-|.....++..+.||||+.+...+|.....+ ++.||.|.
T Consensus 490 l~~~~e~~~~~~s~~~~-----------~~~e~ln~~~~~~gas~~~~f~r~~~~l~~~~~k~s~~~~~~kw~ip~vT~~ 558 (811)
T KOG1929|consen 490 LSQPFENLTISNSQSAE-----------AEREKLNNLANDLGASNVKTFTRKSTTLLTTSAKGSKYEIAGKWSIPIVTPD 558 (811)
T ss_pred ccccccCceEEeeechH-----------HHHHHHhHhhhhccccccceeeecccEEeccccccchhhhccccCCCccChh
Confidence 45789999999999986 6777899999999999999998777999998855555554443 79999999
Q ss_pred hHHHHHHhCCCCCCcCceee
Q psy7164 1421 WIVDSISAGKLLDHKKYLLY 1440 (2307)
Q Consensus 1421 WI~DSI~~gklLp~~~Y~l~ 1440 (2307)
||+.|+++++..+..-|+.-
T Consensus 559 wL~e~~rq~~~~~~e~~l~~ 578 (811)
T KOG1929|consen 559 WLYECVRQNKGERNEGFLNG 578 (811)
T ss_pred HHHhhccccCcccceeeccc
Confidence 99999999999998888654
No 123
>PRK10337 sensor protein QseC; Provisional
Probab=92.29 E-value=0.19 Score=64.72 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCCeEEEEeCCCCccccc
Q psy7164 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVE 132 (2307)
Q Consensus 84 L~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~gsIsV~DnGrGIPvd~ 132 (2307)
|..++..+|+||+.... ....|.|.+.. ..|+|.|||.|||.+.
T Consensus 353 l~~vl~Nli~NA~k~~~---~~~~i~i~~~~--~~i~i~D~G~Gi~~~~ 396 (449)
T PRK10337 353 LSLLVRNLLDNAIRYSP---QGSVVDVTLNA--RNFTVRDNGPGVTPEA 396 (449)
T ss_pred HHHHHHHHHHHHHhhCC---CCCeEEEEEEe--eEEEEEECCCCCCHHH
Confidence 45567777777776542 23468887765 3899999999999763
No 124
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=92.25 E-value=0.2 Score=64.55 Aligned_cols=46 Identities=26% Similarity=0.380 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCccccc
Q psy7164 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVE 132 (2307)
Q Consensus 84 L~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~ 132 (2307)
|..++.++|.||+.... ..+.|.|++..+++ .|+|+|||.|||.+.
T Consensus 369 l~~vl~nli~Na~~~~~---~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~ 416 (475)
T PRK11100 369 LRQALGNLLDNAIDFSP---EGGTITLSAEVDGEQVALSVEDQGPGIPDYA 416 (475)
T ss_pred HHHHHHHHHHHHHHhCC---CCCEEEEEEEEcCCEEEEEEEECCCCCCHHH
Confidence 66788888888887542 33578888876555 599999999999653
No 125
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=92.02 E-value=0.29 Score=59.45 Aligned_cols=48 Identities=21% Similarity=0.269 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVEH 133 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~ 133 (2307)
-|..++.++|.||++... ....|.|.+..+++ .++|.|||.|||.+..
T Consensus 229 ~l~~vl~nll~Nai~~~~---~~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~ 278 (333)
T TIGR02966 229 ELRSAFSNLVSNAIKYTP---EGGTITVRWRRDGGGAEFSVTDTGIGIAPEHL 278 (333)
T ss_pred HHHHHHHHHHHHhheeCC---CCCeEEEEEEEcCCEEEEEEEecCCCCCHHHH
Confidence 367788899999987532 34578887765544 5899999999998744
No 126
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=91.76 E-value=0.29 Score=67.08 Aligned_cols=47 Identities=19% Similarity=0.308 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVE 132 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~ 132 (2307)
-+.+++.++|.||++... ....|.|.+..+++ .|+|.|||.|||.+.
T Consensus 579 ~l~~vl~nLl~NAik~~~---~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~ 627 (679)
T TIGR02916 579 RLERVLGHLVQNALEATP---GEGRVAIRVERECGAARIEIEDSGCGMSPAF 627 (679)
T ss_pred HHHHHHHHHHHHHHHhCC---CCCcEEEEEEEcCCEEEEEEEEcCCCcChHH
Confidence 477899999999998753 23468888876544 688999999999764
No 127
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=90.87 E-value=0.42 Score=59.42 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccC------------CeEEEEeCCCCcccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQET------------NTISVWNNGKGIPVVEH 133 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~------------gsIsV~DnGrGIPvd~~ 133 (2307)
-|.+++..+|+||++... .....|.|.+.... -.|+|.|||.|||.+..
T Consensus 237 ~l~~vl~nLl~NA~~~~~--~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~ 297 (348)
T PRK11073 237 QIEQVLLNIVRNALQALG--PEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQ 297 (348)
T ss_pred HHHHHHHHHHHHHHHHhc--cCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHH
Confidence 478888999999998642 23456777653210 15899999999997643
No 128
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=90.63 E-value=0.47 Score=62.61 Aligned_cols=46 Identities=28% Similarity=0.297 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHhhhhcccCCCCCeEEEEEEccC---CeEEEEeCCCCccccc
Q psy7164 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQET---NTISVWNNGKGIPVVE 132 (2307)
Q Consensus 84 L~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~---gsIsV~DnGrGIPvd~ 132 (2307)
|..++.+++.||+..... ...|.|.+..++ -.|+|.|||.|||.+.
T Consensus 501 l~~~~~nli~na~~~~~~---~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~ 549 (607)
T PRK11360 501 LKQVLLNILINAVQAISA---RGKIRIRTWQYSDGQVAVSIEDNGCGIDPEL 549 (607)
T ss_pred HHHHHHHHHHHHHHHhcC---CCeEEEEEEEcCCCEEEEEEEeCCCCCCHHH
Confidence 777888888888886432 346777775432 3699999999999864
No 129
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=90.53 E-value=0.28 Score=62.94 Aligned_cols=44 Identities=25% Similarity=0.397 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCccccc
Q psy7164 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVE 132 (2307)
Q Consensus 84 L~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~ 132 (2307)
|..++..+|+||+... ...|.|.+..+++ .|+|.|||.|||.+.
T Consensus 332 l~~il~NLl~NA~k~~-----~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~ 377 (435)
T PRK09467 332 IKRALANLVVNAARYG-----NGWIKVSSGTEGKRAWFQVEDDGPGIPPEQ 377 (435)
T ss_pred HHHHHHHHHHHHHHhC-----CCeEEEEEEecCCEEEEEEEecCCCcCHHH
Confidence 5566777777776542 3468888876554 589999999999754
No 130
>PRK10815 sensor protein PhoQ; Provisional
Probab=90.44 E-value=0.32 Score=64.23 Aligned_cols=44 Identities=27% Similarity=0.515 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCccccc
Q psy7164 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVE 132 (2307)
Q Consensus 84 L~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~ 132 (2307)
|..++..+|+||+.... ..|.|.+..+++ .|+|.|||.|||.+.
T Consensus 379 l~~vl~NLi~NAik~~~-----~~i~I~~~~~~~~v~I~V~D~G~GI~~e~ 424 (485)
T PRK10815 379 FMEVMGNVLDNACKYCL-----EFVEISARQTDEHLHIVVEDDGPGIPESK 424 (485)
T ss_pred HHHHHHHHHHHHHHhcC-----CcEEEEEEEeCCEEEEEEEECCCCcCHHH
Confidence 45566666666665432 246666655444 688999999999764
No 131
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=90.24 E-value=0.33 Score=68.47 Aligned_cols=45 Identities=24% Similarity=0.381 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCccccc
Q psy7164 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVE 132 (2307)
Q Consensus 84 L~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~ 132 (2307)
|.+++..+|.||++... ...|.|.+..+++ .|+|.|||.|||-+.
T Consensus 514 l~~il~NLl~NAik~~~----~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~ 560 (921)
T PRK15347 514 LRQILVNLLGNAVKFTE----TGGIRLRVKRHEQQLCFTVEDTGCGIDIQQ 560 (921)
T ss_pred HHHHHHHHHHHHhhcCC----CCCEEEEEEEcCCEEEEEEEEcCCCCCHHH
Confidence 66778888888887532 2358888776544 688999999999764
No 132
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=90.20 E-value=0.24 Score=63.83 Aligned_cols=44 Identities=27% Similarity=0.434 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCccccc
Q psy7164 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVE 132 (2307)
Q Consensus 84 L~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~ 132 (2307)
|.+++.++|+||+... .+.|.|.+..+++ .|+|+|||.|||.+.
T Consensus 354 l~~~l~nli~NA~~~~-----~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~ 399 (461)
T PRK09470 354 LASALENIVRNALRYS-----HTKIEVAFSVDKDGLTITVDDDGPGVPEEE 399 (461)
T ss_pred HHHHHHHHHHHHHHhC-----CCcEEEEEEEECCEEEEEEEECCCCCCHHH
Confidence 6677888888888653 1357776665544 589999999999764
No 133
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=90.17 E-value=0.41 Score=60.68 Aligned_cols=49 Identities=22% Similarity=0.424 Sum_probs=40.6
Q ss_pred cchhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcccccc
Q psy7164 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVEH 133 (2307)
Q Consensus 81 ~pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~ 133 (2307)
...|+.++.|.|.|++=++ ..+.+.|.+..+++ .++|.|||+|.+++..
T Consensus 277 e~~l~rivQEaltN~~rHa----~A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~~ 327 (365)
T COG4585 277 EDALFRIVQEALTNAIRHA----QATEVRVTLERTDDELRLEVIDNGVGFDPDKE 327 (365)
T ss_pred HHHHHHHHHHHHHHHHhcc----CCceEEEEEEEcCCEEEEEEEECCcCCCcccc
Confidence 3679999999999999754 46789999887666 7889999999998854
No 134
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=90.05 E-value=0.43 Score=59.66 Aligned_cols=72 Identities=14% Similarity=0.215 Sum_probs=59.8
Q ss_pred CCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCCh--hhHhhcCC-CCceeccC
Q psy7164 1344 GIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPH--TKIKKLKP-GDKIIKPE 1420 (2307)
Q Consensus 1344 ~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~--~K~~~~k~-~~kIVkpe 1420 (2307)
.+|.|..|.|.|-.. -++.++.+++..+||++...++.+|+++|+..-+. +|.++-++ |++|+..+
T Consensus 231 ~l~~g~~~v~TG~l~-----------~~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~~~gi~ii~e~ 299 (313)
T PRK06063 231 PLVQGMRVALSAEVS-----------RTHEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHARQLGVPVLDEA 299 (313)
T ss_pred cccCCCEEEEecCCC-----------CCHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHHHcCCccccHH
Confidence 579999999999875 58999999999999999999999999999987554 56666544 78888877
Q ss_pred hHHHHH
Q psy7164 1421 WIVDSI 1426 (2307)
Q Consensus 1421 WI~DSI 1426 (2307)
=.++-+
T Consensus 300 ~f~~ll 305 (313)
T PRK06063 300 AFLELL 305 (313)
T ss_pred HHHHHH
Confidence 665544
No 135
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=90.05 E-value=0.46 Score=64.62 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=63.3
Q ss_pred CCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCChhhHhhcCC-CCceeccChH
Q psy7164 1344 GIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKP-GDKIIKPEWI 1422 (2307)
Q Consensus 1344 ~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~K~~~~k~-~~kIVkpeWI 1422 (2307)
..|.|.+|.|.|-.. ..++.+++++|.++||++..-++.+|+++|++.-+.+|..+.+. |++|+..+..
T Consensus 592 ~~l~gktfV~TG~l~----------~~~R~e~~~lie~~Ggkv~ssVSkktd~LV~G~~aGsKl~KA~~LGI~Ii~e~~f 661 (669)
T PRK14350 592 SFLFGKKFCITGSFN----------GYSRSVLIDKLTKKGAIFNTCVTKYLDFLLVGEKAGLKLKKANNLGIKIMSLFDI 661 (669)
T ss_pred CccCCcEEEEecccC----------CCCHHHHHHHHHHcCCEEeccccCCCcEEEECCCCCchHHHHHHcCCEEecHHHH
Confidence 579999999999763 16899999999999999999999999999999878888777665 8999998887
Q ss_pred HHHH
Q psy7164 1423 VDSI 1426 (2307)
Q Consensus 1423 ~DSI 1426 (2307)
.+-+
T Consensus 662 ~~~l 665 (669)
T PRK14350 662 KSYV 665 (669)
T ss_pred HHHh
Confidence 7643
No 136
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=90.05 E-value=0.39 Score=67.46 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEcc---------------CC--eEEEEeCCCCccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQE---------------TN--TISVWNNGKGIPVVE 132 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d---------------~g--sIsV~DnGrGIPvd~ 132 (2307)
-|.+++..+|.||+.... ....|.|.+..+ ++ .|+|.|||.|||.+.
T Consensus 560 ~L~qvl~NLl~NAik~~~---~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~ 623 (828)
T PRK13837 560 ELQQVLMNLCSNAAQAMD---GAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAV 623 (828)
T ss_pred HHHHHHHHHHHHHHHHcc---cCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHH
Confidence 477888888888888643 234677776543 23 689999999999764
No 137
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=89.39 E-value=0.35 Score=57.82 Aligned_cols=47 Identities=36% Similarity=0.427 Sum_probs=37.3
Q ss_pred chhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccC--CeEEEEeCCCCccccc
Q psy7164 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQET--NTISVWNNGKGIPVVE 132 (2307)
Q Consensus 82 pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~--gsIsV~DnGrGIPvd~ 132 (2307)
.-|-+++..+|.||++... .+.|.|.+..++ -.++|.|||.|||.+.
T Consensus 227 ~~l~~vl~nLi~NAi~~~~----~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~ 275 (336)
T COG0642 227 ERLRQVLVNLLSNAIKYTP----GGEITISVRQDDEQVTISVEDTGPGIPEEE 275 (336)
T ss_pred HHHHHHHHHHHHHHhccCC----CCeEEEEEEecCCeEEEEEEcCCCCCCHHH
Confidence 3467788899999998652 468999988754 3799999999999864
No 138
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=89.26 E-value=0.44 Score=67.32 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVEH 133 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~ 133 (2307)
-|.+++..+|.||+... ..+.|.|.+..+++ .|+|.|||.|||.+..
T Consensus 561 ~l~qil~NLl~NAik~~----~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 609 (914)
T PRK11466 561 RIRQVITNLLSNALRFT----DEGSIVLRSRTDGEQWLVEVEDSGCGIDPAKL 609 (914)
T ss_pred HHHHHHHHHHHHHHHhC----CCCeEEEEEEEcCCEEEEEEEECCCCCCHHHH
Confidence 35667777788887753 23468888876544 5889999999997643
No 139
>PRK10490 sensor protein KdpD; Provisional
Probab=89.18 E-value=0.47 Score=67.19 Aligned_cols=47 Identities=28% Similarity=0.434 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVE 132 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~ 132 (2307)
-|.+++..+|+||+... +....|.|.+..+++ .|+|.|||.|||-+.
T Consensus 778 ~L~qVL~NLL~NAik~s---~~g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~ 826 (895)
T PRK10490 778 LFERVLINLLENAVKYA---GAQAEIGIDAHVEGERLQLDVWDNGPGIPPGQ 826 (895)
T ss_pred HHHHHHHHHHHHHHHhC---CCCCeEEEEEEEeCCEEEEEEEECCCCCCHHH
Confidence 46778888888888754 234568888776554 588999999999764
No 140
>KOG3524|consensus
Probab=89.13 E-value=0.81 Score=60.40 Aligned_cols=78 Identities=24% Similarity=0.384 Sum_probs=65.1
Q ss_pred CCCCCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCChhhHhhcCCCCceecc
Q psy7164 1340 DSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKPGDKIIKP 1419 (2307)
Q Consensus 1340 ~~~~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~K~~~~k~~~kIVkp 1419 (2307)
.-..-.|++++.|+.|... -.++|-.|+...||-+.....+++||.||.+--.+|..--..+.++++|
T Consensus 113 ply~~~m~~vvlcfTg~rk------------k~e~lv~lvh~mgg~irkd~nsktthli~n~s~gek~~~a~t~~~~~rp 180 (850)
T KOG3524|consen 113 PLYCELMKDVVMCFTGERK------------KKEELVDLVHYMGGSIRKDTNSKTTHLIANKVEGEKQSIALVGVPTMRP 180 (850)
T ss_pred cccchhhcCceeeeeccch------------hhHHHHHHHHHhcceeEeeeccCceEEEeecccceEEEEEeeccceech
Confidence 3445689999999999973 4559999999999999999999999999988666665554457899999
Q ss_pred ChHHHHHHhC
Q psy7164 1420 EWIVDSISAG 1429 (2307)
Q Consensus 1420 eWI~DSI~~g 1429 (2307)
+||+.|++..
T Consensus 181 ~wv~~aw~~r 190 (850)
T KOG3524|consen 181 DWVTEAWKHR 190 (850)
T ss_pred HhhhhhhcCc
Confidence 9999999853
No 141
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=88.70 E-value=0.49 Score=56.06 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=51.3
Q ss_pred CCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhh--hCcchHHHHHHHhcCCCC
Q psy7164 1980 PLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNE--VGNKNGLTLYKHCRGEDD 2035 (2307)
Q Consensus 1980 PV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~--fG~k~G~~L~~~arGiD~ 2035 (2307)
++.+|||||.+.+++|...|+.|+.+|...+.+.|... +|.+.+..++.++.+.+.
T Consensus 4 ~L~~IpGIG~krakkLl~~GF~Sve~Ik~AS~eEL~~V~GIg~k~AekI~e~l~~~~~ 61 (232)
T PRK12766 4 ELEDISGVGPSKAEALREAGFESVEDVRAADQSELAEVDGIGNALAARIKADVGGLEV 61 (232)
T ss_pred ccccCCCcCHHHHHHHHHcCCCCHHHHHhCCHHHHHHccCCCHHHHHHHHHHhccccc
Confidence 57789999999999999999999999999999999999 888999999999886543
No 142
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=88.18 E-value=0.73 Score=62.91 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=64.7
Q ss_pred CCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCChhhHhhcCC-CCceeccChH
Q psy7164 1344 GIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKP-GDKIIKPEWI 1422 (2307)
Q Consensus 1344 ~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~K~~~~k~-~~kIVkpeWI 1422 (2307)
..|.|.+|.|.|... .-++.+++.++..+||++...++.+|+++|+..-+.+|..+.+. |++|++.+-.
T Consensus 589 ~~~~g~~~v~TG~l~----------~~~R~e~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsK~~kA~~lgI~ii~E~~f 658 (665)
T PRK07956 589 VDLAGKTVVLTGTLE----------QLSRDEAKEKLEALGAKVSGSVSKKTDLVVAGEAAGSKLAKAQELGIEVLDEEEF 658 (665)
T ss_pred CCccccEEEEeCCCC----------CCCHHHHHHHHHHcCCEEeCcccCCCCEEEECCCCChHHHHHHHcCCeEEcHHHH
Confidence 359999999999974 13899999999999999999999999999999877777776654 8999999988
Q ss_pred HHHHHh
Q psy7164 1423 VDSISA 1428 (2307)
Q Consensus 1423 ~DSI~~ 1428 (2307)
.+.+..
T Consensus 659 ~~~l~~ 664 (665)
T PRK07956 659 LRLLGE 664 (665)
T ss_pred HHHHhc
Confidence 887764
No 143
>KOG1977|consensus
Probab=88.17 E-value=0.28 Score=64.22 Aligned_cols=45 Identities=27% Similarity=0.522 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCCeEEEEeCCCCccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVE 132 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~gsIsV~DnGrGIPvd~ 132 (2307)
.|-+++.|++-|++|.. ++.|.|.++...-+|.|.|||.|+--|.
T Consensus 21 sla~~VeElv~NSiDA~-----At~V~v~V~~~t~sv~ViDdG~G~~rdD 65 (1142)
T KOG1977|consen 21 SLAQCVEELVLNSIDAE-----ATCVAVRVNMETFSVQVIDDGFGMGRDD 65 (1142)
T ss_pred HHHHHHHHHHhhccccC-----ceEEEEEecCceeEEEEEecCCCccHHH
Confidence 36679999999999963 4578888877777999999999998654
No 144
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=87.65 E-value=0.84 Score=62.45 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=65.2
Q ss_pred CCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCCh-hhHhhcCC-CCceeccC
Q psy7164 1343 GGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPH-TKIKKLKP-GDKIIKPE 1420 (2307)
Q Consensus 1343 ~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~-~K~~~~k~-~~kIVkpe 1420 (2307)
...|.|.+|.|.|... .-++.+++++|..+||++...++.+|+++|++.-+. +|.++.+. |++|+..+
T Consensus 607 ~~~l~g~~~v~TG~l~----------~~~R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G~~~g~sKl~kA~~lgi~ii~E~ 676 (689)
T PRK14351 607 GDALDGLTFVFTGSLS----------GYTRSEAQELVEAHGGNATGSVSGNTDYLVVGENPGQSKRDDAEANDVPTLDEE 676 (689)
T ss_pred CCCCCCcEEEEccCCC----------CCCHHHHHHHHHHcCCEEcCCcCCCccEEEEcCCCChhHHHHHHHCCCeEecHH
Confidence 4579999999999874 148999999999999999999999999999998776 67776654 89999999
Q ss_pred hHHHHHHh
Q psy7164 1421 WIVDSISA 1428 (2307)
Q Consensus 1421 WI~DSI~~ 1428 (2307)
...+-++.
T Consensus 677 ~f~~ll~~ 684 (689)
T PRK14351 677 EFEELLAE 684 (689)
T ss_pred HHHHHHHh
Confidence 88887764
No 145
>KOG0966|consensus
Probab=87.08 E-value=0.58 Score=62.72 Aligned_cols=68 Identities=28% Similarity=0.472 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHc-CCEEEEec------cCCccEEEeCCC--ChhhHhhcCC-----CCceeccChHHHHHHhCCCCCCcC
Q psy7164 1371 SAEELKALMMLH-GGIYHHYE------SSRTTHIIASNL--PHTKIKKLKP-----GDKIIKPEWIVDSISAGKLLDHKK 1436 (2307)
Q Consensus 1371 s~~eL~~li~~h-GG~~~~~l------~~~vTHIIas~l--~~~K~~~~k~-----~~kIVkpeWI~DSI~~gklLp~~~ 1436 (2307)
|.+.+..+..++ ||.+...- ..+.||.|+.-+ +..+..+.++ .-+||.|+||.+||..+.++|+..
T Consensus 800 se~~~~~l~~k~~g~~i~~~~~~~~~~~~~~t~~v~~~i~~~h~~~~~~~~~~lt~~rkv~~~~wv~~s~~~~~~~~e~~ 879 (881)
T KOG0966|consen 800 SEEVIIELKLKNFGGRITDAQSECNNIGAKYTHCVLRCIDEDHEKIKEQKKASLTIKRKVVAPSWVDHSINENCLLPEED 879 (881)
T ss_pred HHHHHHHHHHHHhcceeeeccchhhhcccceeeeeeeecchHHHHHHHHHHHHhcccccccCHHHHHHhhcccccCcccc
Confidence 566788888885 99875432 346799998732 3444444332 349999999999999999999998
Q ss_pred ce
Q psy7164 1437 YL 1438 (2307)
Q Consensus 1437 Y~ 1438 (2307)
|.
T Consensus 880 ~~ 881 (881)
T KOG0966|consen 880 FP 881 (881)
T ss_pred CC
Confidence 83
No 146
>KOG2043|consensus
Probab=86.77 E-value=0.75 Score=64.09 Aligned_cols=80 Identities=26% Similarity=0.549 Sum_probs=57.5
Q ss_pred eEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCChh-h-HhhcCCCCceeccChHHHHH
Q psy7164 1349 VAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPHT-K-IKKLKPGDKIIKPEWIVDSI 1426 (2307)
Q Consensus 1349 ~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~-K-~~~~k~~~kIVkpeWI~DSI 1426 (2307)
+.+-+.++.+ ..-++..+...||.+...... .||+|+..+... | ...+-.|..||.|+|+.+|+
T Consensus 660 ~~~lfs~~~~-------------~~~~k~~~k~lg~s~~ss~~e-~Th~i~~rirRT~k~Leai~~G~~ivT~~wL~s~~ 725 (896)
T KOG2043|consen 660 IEVLFSDKND-------------GKNYKLAKKFLGGSVASSDSE-ATHFIADRIRRTLKFLEAISSGKPLVTPQWLVSSL 725 (896)
T ss_pred eeeeeeeccC-------------chhhhhHHhhccceeeccccc-ceeeeehhhhccHHHHhhhccCCcccchHHHHHHh
Confidence 4455577775 123566777778777665543 799999864311 1 22222388999999999999
Q ss_pred HhCCCCCCcCceeeec
Q psy7164 1427 SAGKLLDHKKYLLYTG 1442 (2307)
Q Consensus 1427 ~~gklLp~~~Y~l~~~ 1442 (2307)
+.|..+++.+|.|.+.
T Consensus 726 k~g~~~dek~yil~D~ 741 (896)
T KOG2043|consen 726 KSGEKLDEKPYILHDE 741 (896)
T ss_pred hccccccCccccccCH
Confidence 9999999999999874
No 147
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=85.97 E-value=1.2 Score=62.93 Aligned_cols=47 Identities=28% Similarity=0.413 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccC---C--eEEEEeCCCCcccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQET---N--TISVWNNGKGIPVVEH 133 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~---g--sIsV~DnGrGIPvd~~ 133 (2307)
-|.+++.-+|.||+.... ...|.|.+.... + .|+|.|+|.|||-+..
T Consensus 565 ~L~QVL~NLL~NAik~t~----~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l 616 (894)
T PRK10618 565 ALRKILLLLLNYAITTTA----YGKITLEVDQDESSPDRLTIRILDTGAGVSIKEL 616 (894)
T ss_pred HHHHHHHHHHHHHHHhCC----CCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHH
Confidence 477888888999887532 235777765321 2 6899999999997643
No 148
>PF08827 DUF1805: Domain of unknown function (DUF1805); InterPro: IPR014931 This protein is found in bacteria and archaea and has an N-terminal tetramerisation region that is composed of beta sheets. ; PDB: 1QW2_A.
Probab=85.77 E-value=0.48 Score=44.99 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=20.2
Q ss_pred hhhcccCCHHHHHcCCCCCCcHHHHHHh
Q psy7164 1668 QRTMNRMGLNTREYGLGNGMFVGHALKK 1695 (2307)
Q Consensus 1668 ~~~i~scNY~AR~~GVk~GM~l~~A~kL 1695 (2307)
...|.++|+.|++.||+.||+..+|+.+
T Consensus 31 ~a~v~~vt~~A~~lGI~~Gm~g~eAL~~ 58 (59)
T PF08827_consen 31 EAPVESVTSAAEELGIKPGMTGREALEK 58 (59)
T ss_dssp HSB-SEE-HHHHHTT--TT-BHHHHGGG
T ss_pred hChHHHHHHHHHHhCCCCCCCHHHHHHh
Confidence 3567899999999999999999999865
No 149
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=85.43 E-value=1 Score=57.24 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC---eEEEEeCCCCcccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN---TISVWNNGKGIPVVEH 133 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g---sIsV~DnGrGIPvd~~ 133 (2307)
-+.+++--++.||+|.+. .+.+.|+|+...+.+ .|.|.|||.|-|++..
T Consensus 564 ~ieQVlvNl~~NaldA~~--h~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~ 615 (673)
T COG4192 564 SIEQVLVNLIVNALDAST--HFAPWIKLIALGTEQEMLRIAIIDNGQGWPHELV 615 (673)
T ss_pred hHHHHHHHHHHHHHhhhc--cCCceEEEEeecCcccceEEEEecCCCCCchhHH
Confidence 366788899999999874 455889999876433 8999999999997644
No 150
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=84.92 E-value=4.3 Score=45.61 Aligned_cols=47 Identities=28% Similarity=0.415 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHhhhhcccCCC-CCeEEEEEEccCC--eEEEEeCCCCccc
Q psy7164 84 LYKIFDEILVNACDNKQRDPK-MNCIKITVNQETN--TISVWNNGKGIPV 130 (2307)
Q Consensus 84 L~~i~~EILdNavDe~~r~g~-~~~I~V~i~~d~g--sIsV~DnGrGIPv 130 (2307)
+-..+.|++.|++.++.+... ...|.|....+++ .|.|+|.|.||+.
T Consensus 41 l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~~~~i~i~D~G~~~~~ 90 (146)
T COG2172 41 LAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDGKLEIRIWDQGPGIED 90 (146)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCCeEEEEEEeCCCCCCC
Confidence 557899999999999765222 2455555544434 8899999988763
No 151
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=84.83 E-value=1.3 Score=58.70 Aligned_cols=45 Identities=18% Similarity=0.358 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVV 131 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd 131 (2307)
.+++++.|+|+||+.... .+.|.|++..+++ .++|.|||.|||.+
T Consensus 410 ~L~ril~nlL~NAiKha~----~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 410 TLFRVCQEGLNNIVKHAD----ASAVTLQGWQQDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHHHHHhCC----CCEEEEEEEEcCCEEEEEEEECCCCCCcC
Confidence 477888899999888642 3478888876555 58999999999954
No 152
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=84.64 E-value=1.5 Score=58.83 Aligned_cols=46 Identities=37% Similarity=0.461 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVE 132 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~ 132 (2307)
-|++++.|+|.||+.+.. .+.|.|.+..+++ .|+|.|||.|||.+.
T Consensus 469 ~l~~il~ell~NA~kha~----a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~~ 516 (569)
T PRK10600 469 HLLQIAREALSNALKHAQ----ASEVVVTVAQNQNQVKLSVQDNGCGVPENA 516 (569)
T ss_pred HHHHHHHHHHHHHHHhCC----CCeEEEEEEEcCCEEEEEEEECCCCCCccc
Confidence 377889999999887642 3468888876555 688999999999753
No 153
>PRK13560 hypothetical protein; Provisional
Probab=84.48 E-value=1.4 Score=60.99 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHhhhhcccCCCCCeEEEEEEcc-CC--eEEEEeCCCCcccc
Q psy7164 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQE-TN--TISVWNNGKGIPVV 131 (2307)
Q Consensus 84 L~~i~~EILdNavDe~~r~g~~~~I~V~i~~d-~g--sIsV~DnGrGIPvd 131 (2307)
+..++.++|.||++....++....|.|.+... ++ .|+|.|||.|||.+
T Consensus 712 ~~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 712 CGLIISELLSNALKHAFPDGAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred hHHHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 45588999999999764444456788888765 33 68999999999965
No 154
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=84.27 E-value=1 Score=63.98 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=34.7
Q ss_pred chhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC---eEEEEeCCCCccccc
Q psy7164 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN---TISVWNNGKGIPVVE 132 (2307)
Q Consensus 82 pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g---sIsV~DnGrGIPvd~ 132 (2307)
.-|.+++..+|.||+.... .+.|.|.+...++ .|+|.|+|.|||.+.
T Consensus 578 ~~l~~il~nLi~NAik~~~----~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~ 627 (968)
T TIGR02956 578 PRIRQVLINLVGNAIKFTD----RGSVVLRVSLNDDSSLLFEVEDTGCGIAEEE 627 (968)
T ss_pred HHHHHHHHHHHHHHHhhCC----CCeEEEEEEEcCCCeEEEEEEeCCCCCCHHH
Confidence 3577888999999998542 2357777654444 499999999999764
No 155
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=84.11 E-value=2.4 Score=57.03 Aligned_cols=73 Identities=25% Similarity=0.269 Sum_probs=64.5
Q ss_pred CCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCChhhHhhcCC-CCceeccChH
Q psy7164 1344 GIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKP-GDKIIKPEWI 1422 (2307)
Q Consensus 1344 ~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~K~~~~k~-~~kIVkpeWI 1422 (2307)
..|.|.+|.+.|... .-|+++.+.++.+.||++..-++.++..||++.-+.+|..+.+. |++|+..++.
T Consensus 593 ~~l~gkt~V~TGtL~----------~~sR~eak~~le~lGakv~~SVSkktD~vvaG~~aGSKl~kA~eLgv~i~~E~~~ 662 (667)
T COG0272 593 SPLAGKTFVLTGTLE----------GMSRDEAKALLEALGAKVSGSVSKKTDYVVAGENAGSKLAKAQELGVKIIDEEEF 662 (667)
T ss_pred cccCCCEEEEeccCC----------CCCHHHHHHHHHHcCCEEeceecccccEEEEcCCCChHHHHHHHcCCeEecHHHH
Confidence 789999999999875 15899999999999999999999999999999989888877665 8999999887
Q ss_pred HHHH
Q psy7164 1423 VDSI 1426 (2307)
Q Consensus 1423 ~DSI 1426 (2307)
+.-+
T Consensus 663 ~~ll 666 (667)
T COG0272 663 LALL 666 (667)
T ss_pred HHhh
Confidence 7543
No 156
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=84.10 E-value=1.2 Score=63.57 Aligned_cols=46 Identities=28% Similarity=0.520 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVE 132 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~ 132 (2307)
-|.+++..+|+||+.... ...|.|.+..+++ .|+|.|||.|||.+.
T Consensus 562 ~L~qvl~NLl~NAik~t~----~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~ 609 (924)
T PRK10841 562 RLQQVISNLLSNAIKFTD----TGCIVLHVRVDGDYLSFRVRDTGVGIPAKE 609 (924)
T ss_pred HHHHHHHHHHHHHHhhCC----CCcEEEEEEEeCCEEEEEEEEcCcCCCHHH
Confidence 366788888888887542 2357676655444 688999999999764
No 157
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=83.14 E-value=1.8 Score=59.23 Aligned_cols=67 Identities=27% Similarity=0.301 Sum_probs=57.2
Q ss_pred CCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCChhhHhhcCC-CCceeccC
Q psy7164 1344 GIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKP-GDKIIKPE 1420 (2307)
Q Consensus 1344 ~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~K~~~~k~-~~kIVkpe 1420 (2307)
..|.|.+|.|.|... ..++.+++.+|..+||++...++.+|+++|+..-+.+|..+.+. |++|++.+
T Consensus 583 ~~l~gk~~v~TG~l~----------~~~R~~~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsKl~kA~~lgi~ii~E~ 650 (652)
T TIGR00575 583 SPLAGKTFVLTGTLS----------QMSRDEAKELLENLGGKVASSVSKKTDYVIAGEKAGSKLAKAQELGIPIINEE 650 (652)
T ss_pred CCccCcEEEEeccCC----------CCCHHHHHHHHHHcCCEEeCCcCCCccEEEECCCCChHHHHHHHcCCcEechh
Confidence 469999999999874 15899999999999999999999999999999877777766554 78888764
No 158
>PRK13557 histidine kinase; Provisional
Probab=82.99 E-value=1.6 Score=57.18 Aligned_cols=48 Identities=21% Similarity=0.242 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEc---------------cCC--eEEEEeCCCCcccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQ---------------ETN--TISVWNNGKGIPVVEH 133 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~---------------d~g--sIsV~DnGrGIPvd~~ 133 (2307)
-|.+++..+|.||++.... ...|.|.... +++ .|+|.|||.|||.+..
T Consensus 277 ~l~~vl~nll~NA~~~~~~---~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~ 341 (540)
T PRK13557 277 QAEVALLNVLINARDAMPE---GGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEIL 341 (540)
T ss_pred HHHHHHHHHHHHHHHhccc---CCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHH
Confidence 4778899999999986532 2346555431 222 5899999999997643
No 159
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=82.98 E-value=1 Score=62.78 Aligned_cols=47 Identities=30% Similarity=0.364 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEcc-CC--eEEEEeCCCCcccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQE-TN--TISVWNNGKGIPVVEH 133 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d-~g--sIsV~DnGrGIPvd~~ 133 (2307)
-|.+++..+|.||++... ...|.|.+..+ ++ .|+|.|||.|||-+..
T Consensus 398 ~l~qvl~NLl~NAik~~~----~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~ 447 (779)
T PRK11091 398 RLRQILWNLISNAVKFTQ----QGGVTVRVRYEEGDMLTFEVEDSGIGIPEDEL 447 (779)
T ss_pred HHHHHHHHHHHHHHHhCC----CCcEEEEEEEccCCEEEEEEEecCCCCCHHHH
Confidence 477888899999988542 23566666543 22 7899999999997643
No 160
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=82.87 E-value=1.8 Score=54.10 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=57.3
Q ss_pred CCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCC---------ChhhHhhcCC--
Q psy7164 1344 GIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNL---------PHTKIKKLKP-- 1412 (2307)
Q Consensus 1344 ~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l---------~~~K~~~~k~-- 1412 (2307)
..|.|.+|.+.|-.. .-++.++.+++..+||++...++.+|+++|++.. ..+|.++.+.
T Consensus 219 ~~l~g~~~vfTG~l~----------~~~R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~ 288 (309)
T PRK06195 219 TAFKEEVVVFTGGLA----------SMTRDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLK 288 (309)
T ss_pred ccccCCEEEEccccC----------CCCHHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHHHHHH
Confidence 579999999999884 1579999999999999999999999999999842 2345554321
Q ss_pred ----CCceeccChHHHHHH
Q psy7164 1413 ----GDKIIKPEWIVDSIS 1427 (2307)
Q Consensus 1413 ----~~kIVkpeWI~DSI~ 1427 (2307)
+++|++.+=.++-|+
T Consensus 289 ~~g~~i~ii~E~~f~~l~~ 307 (309)
T PRK06195 289 KKGQNIKFLNEEEFLQKCK 307 (309)
T ss_pred hCCCCcEEecHHHHHHHHh
Confidence 678887765554443
No 161
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=81.64 E-value=2.2 Score=62.38 Aligned_cols=47 Identities=21% Similarity=0.451 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEE---ccCC----eEEEEeCCCCcccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVN---QETN----TISVWNNGKGIPVVEH 133 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~---~d~g----sIsV~DnGrGIPvd~~ 133 (2307)
-|.+++..+|+||++... .| .|.|.+. .+++ .|+|.|||.|||.+..
T Consensus 828 ~l~qvl~NLl~NAik~~~-~g---~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~ 881 (1197)
T PRK09959 828 AFKQVLSNLLSNALKFTT-EG---AVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQ 881 (1197)
T ss_pred HHHHHHHHHHHHHHHhCC-CC---CEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHH
Confidence 477889999999998643 22 3444332 1122 4789999999997643
No 162
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=80.49 E-value=2.5 Score=52.71 Aligned_cols=45 Identities=24% Similarity=0.570 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVV 131 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd 131 (2307)
-||+++.|.+.|-+-++. .+.|.|.+..++. ..+|.|||.|+|.+
T Consensus 410 TLyRl~QE~LNNI~KHA~----AS~V~i~l~~~~e~l~Lei~DdG~Gl~~~ 456 (497)
T COG3851 410 TLYRLCQELLNNICKHAD----ASAVTIQLWQQDERLMLEIEDDGSGLPPG 456 (497)
T ss_pred eHHHHHHHHHHHHHhccc----cceEEEEEeeCCcEEEEEEecCCcCCCCC
Confidence 499999999999999875 4689999888654 57899999999987
No 163
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=79.94 E-value=3.7 Score=58.07 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHhhhhcccCCCCCeEEEEE--Ecc-CC----eEEEEeCCCCccccc
Q psy7164 84 LYKIFDEILVNACDNKQRDPKMNCIKITV--NQE-TN----TISVWNNGKGIPVVE 132 (2307)
Q Consensus 84 L~~i~~EILdNavDe~~r~g~~~~I~V~i--~~d-~g----sIsV~DnGrGIPvd~ 132 (2307)
|.+++..+|.||+.... ...|.|.+ ... ++ .|+|.|||.|||.+.
T Consensus 409 l~~vl~NLl~NAik~~~----~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~ 460 (919)
T PRK11107 409 LQQIITNLVGNAIKFTE----SGNIDILVELRALSNTKVQLEVQIRDTGIGISERQ 460 (919)
T ss_pred HHHHHHHHHHHHhhcCC----CCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHH
Confidence 56777788888876532 22444444 221 11 489999999999764
No 164
>PF10391 DNA_pol_lambd_f: Fingers domain of DNA polymerase lambda; InterPro: IPR018944 DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains. There is a general polymerase fold consisting of three subdomains that have been likened to the fingers, palm, and thumb of a right hand. This entry represents the central three-helical region of DNA polymerase lambda referred to as the F and G helices of the fingers domain. Contacts with DNA involve this conserved helix-hairpin-helix motif in the fingers region which interacts with the primer strand. This motif is common to several DNA binding proteins and confers a sequence-independent interaction with the DNA backbone []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1KDH_A 1KEJ_A 1JMS_A 2IHM_A 3OGU_A 1MQ2_A 2P66_A 7ICI_A 1ZQN_A 1ZQK_A ....
Probab=78.57 E-value=1.3 Score=41.33 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=20.8
Q ss_pred CCCCCCChhHHHHHHhcCCccchhhhc
Q psy7164 1982 SDLPGVGHSLLFKLNSLGAQTCGDLQN 2008 (2307)
Q Consensus 1982 ~dLpGIG~~~~~kL~~lGI~TigDL~~ 2008 (2307)
..+||||+++++++-+.|++|+.||+.
T Consensus 5 ~~I~GVG~~tA~~w~~~G~rtl~Dl~~ 31 (52)
T PF10391_consen 5 TGIWGVGPKTARKWYAKGIRTLEDLRK 31 (52)
T ss_dssp HTSTT--HHHHHHHHHTT--SHHHHHH
T ss_pred hhcccccHHHHHHHHHhCCCCHHHHhh
Confidence 358999999999999999999999974
No 165
>PF04994 TfoX_C: TfoX C-terminal domain; InterPro: IPR007077 This domain is found in a number of bacterial proteins including the TfoX gene product of Haemophilus influenzae. TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes []. This family corresponds to the C-terminal presumed domain of TfoX. The domain is found in association with the N-terminal domain in some, but not all members of this group, suggesting this is an autonomous and functionally unrelated domain. For example it is found associated with Q9JZR1 from SWISSPROT in IPR002125 from INTERPRO.; PDB: 3BQT_A 3MAB_A.
Probab=78.46 E-value=1.2 Score=45.21 Aligned_cols=32 Identities=31% Similarity=0.485 Sum_probs=25.0
Q ss_pred CCCCCCCCChhHHHHHHhcCCccchhhhcCCH
Q psy7164 1980 PLSDLPGVGHSLLFKLNSLGAQTCGDLQNISL 2011 (2307)
Q Consensus 1980 PV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~ 2011 (2307)
.|++||+||.++.+.|.+.||+|+.||+.+..
T Consensus 4 ~l~~LpNig~~~e~~L~~vGI~t~~~L~~~Ga 35 (81)
T PF04994_consen 4 RLKDLPNIGPKSERMLAKVGIHTVEDLRELGA 35 (81)
T ss_dssp -GCGSTT--HHHHHHHHHTT--SHHHHHHHHH
T ss_pred chhhCCCCCHHHHHHHHHcCCCCHHHHHHhCH
Confidence 58899999999999999999999999998654
No 166
>PRK02362 ski2-like helicase; Provisional
Probab=78.28 E-value=1.7 Score=60.40 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=50.5
Q ss_pred CCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhCcchHHHHHHHhcCC
Q psy7164 1979 IPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGE 2033 (2307)
Q Consensus 1979 LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG~k~G~~L~~~arGi 2033 (2307)
+|+-.|||||+..+++|..+||+|+.||.++....|.+.||.+.+..+...++..
T Consensus 652 ~~L~~ip~i~~~~a~~l~~~gi~s~~dl~~~~~~~l~~~~g~~~~~~i~~~~~~~ 706 (737)
T PRK02362 652 LDLVGLRGVGRVRARRLYNAGIESRADLRAADKSVVLAILGEKIAENILEQAGRR 706 (737)
T ss_pred HHHhCCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHCHHHHHHHHHHhCcc
Confidence 4566799999999999999999999999999999999999999999999988854
No 167
>PF03118 RNA_pol_A_CTD: Bacterial RNA polymerase, alpha chain C terminal domain; InterPro: IPR011260 The core of the bacterial RNA polymerase (RNAP) consists of four subunits, two alpha, a beta and a beta', which are conserved from bacteria to mammals. The alpha subunit (RpoA) initiates RNAP assembly by dimerising to form a platform on which the beta subunits can interact. The alpha subunit consists of a N-terminal domain (NTD) and a C-terminal domain (CTD), connected by a short linker. The NTD is essential for RNAP assembly, while the CTD is necessary for transcription regulation, interacting with transcription factors and promoter upstream elements. In Escherichia coli, the catabolite activator protein (CAP or CRP) was shown to exert its effect through its interactions with the CTD, where CAP binding to CTD promotes RNAP binding to promoter DNA, thereby stimulating transcription initiation at class I CAP-dependent promoters. At class II CAP-dependent promoters, the interaction of CAP with CTD is one of multiple interactions involved in activation []. The CTD has a compact structure of four helices and two long arms enclosing its hydrophobic core, making its folding topology distinct from most other binding proteins. The upstream promoter element-binding site is formed from helices 1 and 4 [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3N97_B 1XS9_D 3K4G_A 3N4M_B 1COO_A 1LB2_E 3IYD_A 1Z3E_B 3GFK_B 3IHQ_B ....
Probab=77.50 E-value=2.7 Score=41.10 Aligned_cols=46 Identities=28% Similarity=0.382 Sum_probs=37.1
Q ss_pred HHHhhcCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhC
Q psy7164 1973 SDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVG 2019 (2307)
Q Consensus 1973 ~~fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG 2019 (2307)
...+...||.+| |+..++...|.+.||+|++||..++...|.+.=|
T Consensus 6 ~~~~~~~~I~~L-~LS~Ra~n~L~~~~I~tv~dL~~~s~~~L~~i~n 51 (66)
T PF03118_consen 6 EEELLDTPIEDL-GLSVRAYNCLKRAGIHTVGDLVKYSEEDLLKIKN 51 (66)
T ss_dssp -HHHHCSBGGGS-TSBHHHHHHHHCTT--BHHHHHCS-HHHHHTSTT
T ss_pred hHHHhcCcHHHh-CCCHHHHHHHHHhCCcCHHHHHhCCHHHHHhCCC
Confidence 345678899999 7999999999999999999999999999977644
No 168
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=77.22 E-value=1.3 Score=54.91 Aligned_cols=114 Identities=22% Similarity=0.325 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccC--CeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQET--NTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDK 160 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~--gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~ 160 (2307)
-+.++++-||.||+-= .+....|.|.+...+ -.|+|.|+|-|||-...+ -||...+-.
T Consensus 342 K~tQVldNii~NA~KY---sP~Gg~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~--------~iFdrfyRv--------- 401 (459)
T COG5002 342 KMTQVLDNIISNALKY---SPDGGRITVSVKQRETWVEISISDQGLGIPKEDLE--------KIFDRFYRV--------- 401 (459)
T ss_pred HHHHHHHHHHHHHhhc---CCCCCeEEEEEeeeCcEEEEEEccCCCCCCchhHH--------HHHHHHhhh---------
Confidence 3667899999999863 344568888887643 378999999999964322 244332222
Q ss_pred cccccccccccccccccCCCCCccccccCCCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCCCCC
Q psy7164 161 VTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKD 240 (2307)
Q Consensus 161 ~~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~~~~ 240 (2307)
|++-.-++|.-|+|++.+--. |+-+ .|.+|--. ...
T Consensus 402 --------------------dkARsR~~gGTGLGLaIakei-----V~~h---gG~iWA~s----------------~~g 437 (459)
T COG5002 402 --------------------DKARSRKMGGTGLGLAIAKEI-----VQAH---GGRIWAES----------------EEG 437 (459)
T ss_pred --------------------hhhhhhcCCCCchhHHHHHHH-----HHHh---CCeEEEec----------------ccC
Confidence 223345677789999866422 2222 35555311 123
Q ss_pred CCcEEEEEeCcccccccccC
Q psy7164 241 DFTKITFTPDLTKFKMTSLD 260 (2307)
Q Consensus 241 ~GT~VtF~PD~~iF~~~~f~ 260 (2307)
.||+++|.--.+.+....|+
T Consensus 438 kgtt~~ftLPy~~~~~ddWd 457 (459)
T COG5002 438 KGTTFSFTLPYSGEAGDDWD 457 (459)
T ss_pred CceEEEEEecccCccccccc
Confidence 59999997666655444443
No 169
>COG3743 Uncharacterized conserved protein [Function unknown]
Probab=77.09 E-value=2 Score=46.85 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=33.6
Q ss_pred CCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhh
Q psy7164 1980 PLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNE 2017 (2307)
Q Consensus 1980 PV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~ 2017 (2307)
.|+.|-|||+++...|+.+||.|..||+.++...+...
T Consensus 68 DLt~I~GIGPk~e~~Ln~~GI~tfaQIAAwt~~di~~i 105 (133)
T COG3743 68 DLTRISGIGPKLEKVLNELGIFTFAQIAAWTRADIAWI 105 (133)
T ss_pred cchhhcccCHHHHHHHHHcCCccHHHHHhcCHHHHHHH
Confidence 36778899999999999999999999999998877553
No 170
>PRK13559 hypothetical protein; Provisional
Probab=76.52 E-value=6.4 Score=49.42 Aligned_cols=48 Identities=23% Similarity=0.223 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEE--EccCC--eEEEEeCCCCccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITV--NQETN--TISVWNNGKGIPV 130 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i--~~d~g--sIsV~DnGrGIPv 130 (2307)
.|..+|.|++.||+...........|.|.+ ..+++ .|+|.|||.|+|.
T Consensus 267 ~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~ 318 (361)
T PRK13559 267 PLGLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPP 318 (361)
T ss_pred HHHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCC
Confidence 478899999999998622112345788888 44344 7778999987664
No 171
>COG5275 BRCT domain type II [General function prediction only]
Probab=76.24 E-value=5.3 Score=46.61 Aligned_cols=75 Identities=25% Similarity=0.295 Sum_probs=59.5
Q ss_pred CCCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCC-hhhHhhcCC-CCceecc
Q psy7164 1342 RGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLP-HTKIKKLKP-GDKIIKP 1419 (2307)
Q Consensus 1342 ~~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~-~~K~~~~k~-~~kIVkp 1419 (2307)
.+.-+.|++|.+.|... -.++.+-+.|+.++||++....++++|.|++..-+ ++|++.+++ +++++..
T Consensus 153 ~~~cL~G~~fVfTG~l~----------TlsR~~a~~lvk~yGgrvT~~pSskTtflvlGdnaGP~K~ekiKqlkIkaidE 222 (276)
T COG5275 153 ERECLKGKVFVFTGDLK----------TLSRDDAKTLVKVYGGRVTAVPSSKTTFLVLGDNAGPSKMEKIKQLKIKAIDE 222 (276)
T ss_pred CcccccccEEEEecccc----------cccchhHHHHHHHhCCeeecccccceeEEEecCCCChHHHHHHHHhCCccccH
Confidence 35789999999998863 14788999999999999999999999999998544 778888876 6777776
Q ss_pred ChHHHHH
Q psy7164 1420 EWIVDSI 1426 (2307)
Q Consensus 1420 eWI~DSI 1426 (2307)
+=...-|
T Consensus 223 egf~~LI 229 (276)
T COG5275 223 EGFDSLI 229 (276)
T ss_pred HHHHHHH
Confidence 6544433
No 172
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=75.48 E-value=3.8 Score=50.57 Aligned_cols=51 Identities=24% Similarity=0.350 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHhhhhcc-cCCCCCe--------EEEEEEccC----CeEEEEeCCCCcccccc
Q psy7164 83 GLYKIFDEILVNACDNKQ-RDPKMNC--------IKITVNQET----NTISVWNNGKGIPVVEH 133 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~-r~g~~~~--------I~V~i~~d~----gsIsV~DnGrGIPvd~~ 133 (2307)
-|.++|.-|+-||+...- ++..... +.++|.... -.+.|.|||.|||-+.-
T Consensus 241 qliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~ 304 (363)
T COG3852 241 QLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQ 304 (363)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHh
Confidence 477899999999997642 1121223 344443211 16789999999998753
No 173
>PF14229 DUF4332: Domain of unknown function (DUF4332)
Probab=73.66 E-value=2.8 Score=45.65 Aligned_cols=53 Identities=19% Similarity=0.375 Sum_probs=45.2
Q ss_pred eChhhHHHHhhcCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhC
Q psy7164 1967 LTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVG 2019 (2307)
Q Consensus 1967 L~pe~v~~fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG 2019 (2307)
++...+.++...-.+-.++|||...+.-|...||.|+.+|+..++..|...++
T Consensus 41 i~~~~l~~w~~~AdL~ri~gi~~~~a~LL~~AGv~Tv~~LA~~~p~~L~~~l~ 93 (122)
T PF14229_consen 41 ISERNLLKWVNQADLMRIPGIGPQYAELLEHAGVDTVEELAQRNPQNLHQKLG 93 (122)
T ss_pred CCHHHHHHHHhHHHhhhcCCCCHHHHHHHHHhCcCcHHHHHhCCHHHHHHHHH
Confidence 44555666655556667999999999999999999999999999999999888
No 174
>cd00188 TOPRIM Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA, type IIA and type IIB topoisomerases, bacterial DnaG-type primases, small primase-like proteins from bacteria and archaea, OLD family nucleases from bacterial and archaea, and bacterial DNA repair proteins of the RecR/M family. This domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases and in strand joining in topoisomerases and, as a general acid in strand cleavage by topisomerases and nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=71.88 E-value=4.3 Score=38.85 Aligned_cols=72 Identities=28% Similarity=0.375 Sum_probs=44.6
Q ss_pred EEEEEecCccchhcccCcccccccceeeccCCcccchhhccchHHHhhcHHHHHHHHHhccccCCCcCCcCCCCCCCCCc
Q psy7164 473 TLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGR 552 (2307)
Q Consensus 473 eLfIvEGDSA~~~a~sGsak~gRD~qaIlPLRGKiLNV~ka~~~ki~~N~EI~~Li~aLGlg~~~~y~~~~d~~~LRYgk 552 (2307)
.++||||++-.-++. ..+.....++++.|+..+ .-...+...++. +.+
T Consensus 2 ~viivEg~~d~~~l~----~~~~~~~~~~~~~G~~~~------------~~~~~~~~~~~~----------------~~~ 49 (83)
T cd00188 2 KLIIVEGPSDALALA----QAGGYGGAVVALGGHALN------------KTRELLKRLLGE----------------AKE 49 (83)
T ss_pred EEEEEecHHHHHHHH----HHcCCCEEEEEEccEEcH------------HHHHHHHHHhcC----------------CCE
Confidence 689999999652221 111123678899998776 111122222111 578
Q ss_pred EEecccCCCCCCchhHHHHHHHHH
Q psy7164 553 LMIMTDQDQDGSHIKGLIINFIHH 576 (2307)
Q Consensus 553 IiImTDaDvDG~HI~~LLltff~r 576 (2307)
|+|++|.|..|..+...+......
T Consensus 50 v~i~~D~D~~g~~~~~~~~~~~~~ 73 (83)
T cd00188 50 VIIATDADREGEAIALRLLELLKS 73 (83)
T ss_pred EEEEcCCChhHHHHHHHHHHHHHh
Confidence 999999999999766666555543
No 175
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=70.41 E-value=7.8 Score=51.71 Aligned_cols=45 Identities=24% Similarity=0.398 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHhhhhcccCCCCCeEEEEEEcc-CC--eEEEEeCCCCccccc
Q psy7164 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQE-TN--TISVWNNGKGIPVVE 132 (2307)
Q Consensus 84 L~~i~~EILdNavDe~~r~g~~~~I~V~i~~d-~g--sIsV~DnGrGIPvd~ 132 (2307)
+.+++.++|.||+... ....|.|.+..+ ++ .|+|.|||.|||...
T Consensus 472 l~qv~~nll~NA~k~~----~~~~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~ 519 (565)
T PRK10935 472 LLQIIREATLNAIKHA----NASEIAVSCVTNPDGEHTVSIRDDGIGIGELK 519 (565)
T ss_pred HHHHHHHHHHHHHhcC----CCCeEEEEEEEcCCCEEEEEEEECCcCcCCCC
Confidence 6678888888888753 335688888654 34 688999999999653
No 176
>PF14501 HATPase_c_5: GHKL domain
Probab=69.01 E-value=14 Score=38.36 Aligned_cols=41 Identities=24% Similarity=0.377 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeC
Q psy7164 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNN 124 (2307)
Q Consensus 84 L~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~Dn 124 (2307)
|+.||--+||||++++........|.|.+...++ .|+|.|.
T Consensus 6 l~~il~nlldNAiea~~~~~~~~~I~i~~~~~~~~~~i~i~N~ 48 (100)
T PF14501_consen 6 LCRILGNLLDNAIEACKKYEDKRFISISIREENGFLVIIIENS 48 (100)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCEEEEEEEEC
Confidence 7789999999999997654336688888887666 4556664
No 177
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=68.26 E-value=6.9 Score=52.08 Aligned_cols=51 Identities=24% Similarity=0.481 Sum_probs=38.1
Q ss_pred chhHHHHHHHHHHhhhhccc----CCCCCeEEEEEEccCC--eEEEEeCCCCccccc
Q psy7164 82 PGLYKIFDEILVNACDNKQR----DPKMNCIKITVNQETN--TISVWNNGKGIPVVE 132 (2307)
Q Consensus 82 pGL~~i~~EILdNavDe~~r----~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~ 132 (2307)
.-|-+.|.-+|-||.+.... .+....|.++++..+| .+.|.|||+|.|.+.
T Consensus 599 ~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~ 655 (712)
T COG5000 599 TLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVIDNGKGFPREN 655 (712)
T ss_pred HHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCCeEEEEEecCCCCCChHH
Confidence 45667888899999887431 1233368888887777 677999999999874
No 178
>COG2251 Predicted nuclease (RecB family) [General function prediction only]
Probab=67.77 E-value=6.4 Score=50.69 Aligned_cols=70 Identities=27% Similarity=0.286 Sum_probs=57.8
Q ss_pred EeChhhHHHHhhcCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhC--cchHHHHHHHhcCCCC
Q psy7164 1966 HLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVG--NKNGLTLYKHCRGEDD 2035 (2307)
Q Consensus 1966 ~L~pe~v~~fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG--~k~G~~L~~~arGiD~ 2035 (2307)
...|....+++..-.+.-+|||++.....|..+||+|+.||+..+...+...+| ...+.++...++-...
T Consensus 212 ~f~p~C~~~a~e~~~L~Lv~Gi~~~r~~~l~~~GI~Ti~~LA~~~~~~~~~~~ga~~~~~~~l~~qa~~~~e 283 (474)
T COG2251 212 QFEPQCESEALEEDDLSLVPGITPSRYDVLEEVGITTIEDLADASLPILELVAGALTALAAQLVLQARARVE 283 (474)
T ss_pred hcchhhhHHHhhccceeccCCCCHHHHHHHHHcCcchHHHHHhccccchhhhhhhHHHHHHHHHHHHHhhcc
Confidence 345667778889999999999999999999999999999999998888888887 4566666666665443
No 179
>PRK00254 ski2-like helicase; Provisional
Probab=65.27 E-value=5.1 Score=55.76 Aligned_cols=54 Identities=24% Similarity=0.289 Sum_probs=49.7
Q ss_pred cCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhh--hCcchHHHHHHHhc
Q psy7164 1978 NIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNE--VGNKNGLTLYKHCR 2031 (2307)
Q Consensus 1978 ~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~--fG~k~G~~L~~~ar 2031 (2307)
.+|+..|||||+..+++|.+.|+.|+.||..++.++|.+. +|.+.+..++..++
T Consensus 644 ~~~L~~ipgig~~~~~~l~~~g~~s~~~i~~a~~~el~~~~gi~~~~a~~i~~~~~ 699 (720)
T PRK00254 644 LLELMRLPMIGRKRARALYNAGFRSIEDIVNAKPSELLKVEGIGAKIVEGIFKHLG 699 (720)
T ss_pred HhhhhcCCCCCHHHHHHHHHccCCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHhc
Confidence 4567789999999999999999999999999999999998 88899999998877
No 180
>KOG0019|consensus
Probab=64.66 E-value=5.8 Score=52.55 Aligned_cols=132 Identities=19% Similarity=0.216 Sum_probs=75.2
Q ss_pred HHHHHHHHhhhhc--cc-----C----CCCCeEEEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccCC
Q psy7164 87 IFDEILVNACDNK--QR-----D----PKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155 (2307)
Q Consensus 87 i~~EILdNavDe~--~r-----~----g~~~~I~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~ 155 (2307)
-++|+|.||-|.. +| + +.--.|.|+-+.+++.++|.|.|.||--+.-.. -+|++--|
T Consensus 61 FlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~nk~~~tlti~DtGIGMTk~dLvn--------nLGTIAkS---- 128 (656)
T KOG0019|consen 61 FLRELISNASDALEKLRYLELKGDEKALPELEIRIITNKDKRTITIQDTGIGMTKEDLVN--------NLGTIAKS---- 128 (656)
T ss_pred HHHhhhccccchHHHHHHHhhcCccccccceeEEeccCCCcceEEEEecCCCcCHHHHHh--------hhhhhhhc----
Confidence 5789999999873 22 1 122356666677788999999999887532111 11222111
Q ss_pred CcccccccccccccccccccccCCCCCccccccCCCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCcccc
Q psy7164 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIK 235 (2307)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~ 235 (2307)
+. +.|+..+ .+ ..+..--.|+.|||.--+.+..++..|++....+. .|..++..|-. -.+..
T Consensus 129 --Gt--K~Fmeal------ke----a~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~~~e-~y~Wes~~~gs---~~v~~ 190 (656)
T KOG0019|consen 129 --GS--KAFLEAL------KE----AEAESNLIGQFGVGFYSAFMVADRVVVTTRHPADE-GLQWTSNGRGS---YEIAE 190 (656)
T ss_pred --cc--HHHHHHH------Hh----cccchhhhhhcccchhhhhhhhheeEEeeccCCCc-ceeeecCCCCc---eEEee
Confidence 00 0111111 00 12223467999999999999999999988643333 55545444321 11111
Q ss_pred CCCCCCCcEEEEE
Q psy7164 236 SGSKDDFTKITFT 248 (2307)
Q Consensus 236 ~~~~~~GT~VtF~ 248 (2307)
...-.+||+|...
T Consensus 191 ~~~~~rGTki~l~ 203 (656)
T KOG0019|consen 191 ASGLRTGTKIVIH 203 (656)
T ss_pred ccCccccceEEee
Confidence 1225689998864
No 181
>PF11799 IMS_C: impB/mucB/samB family C-terminal domain; InterPro: IPR017961 This entry represents the little finger domain found in Y-family (lesion bypass) DNA polymerases. Y-family polymerases were originally known as UmuC/DinB/Rev1/Rad30 after each branch of the family. These enzymes are characterised by their low-fidelity synthesis on undamaged DNA templates and by their ability to traverse replication-blocking lesions. By contrast, high-fidelity polymerases (such as DNA polymerase III) are sensitive to distortions in the DNA template. As a result, Y-family polymerases can extend primer strands across DNA strand lesions that would otherwise stall replicative polymerases. To minimize mutations through their low fidelity synthesis, these enzymes are regulated, and are thought to interact with processivity factors, beta-clamp or proliferating cell nuclear antigen (PCNA), which are also essential for the function of replicative DNA polymerases []. Organisms can contain more than one Y-family polymerase, each with a unique DNA damage bypass and fidelity profile. For example, humans posses four Y-family polymerases: DNA polymerases kappa, iota, eta and Rev1. Y-family polymerases show no homology to DNA polymerases from the A-, B-, C-, D- or X-families []. The Y-family of DNA polymerases includes the following enzymes: Prokaryotic DNA polymerase IV (DinB) []. Archaeal DinB homologue DNA polymerase IV []. Eukaryotic DinB homologue DNA polymerase kappa []. Prokarytoic DNA repair proteins UmuC and UmuD []. Eukaryotic Rad30 homologues DNA polymerase eta and iota [, ]. Eukaryotic DNA repair protein Rev1 []. Human DNA polymerase kappa is a right-handed shaped molecule with palm, fingers, thumb, little finger and wrist subdomains []. This entry represents the little finger domain.; GO: 0003684 damaged DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006281 DNA repair; PDB: 3PZP_B 2OH2_B 2W7O_B 3IN5_B 1T94_A 2W7P_B 3GV8_B 3G6V_A 4EBC_A 3GV5_B ....
Probab=64.52 E-value=7.2 Score=41.43 Aligned_cols=87 Identities=22% Similarity=0.258 Sum_probs=55.7
Q ss_pred CcCChhHHHHHHHHHHh----hhcCCCCCceEEeeeec--c-----ccccccCCccCcchHHHHHHHHHHHHHhcC-CCC
Q psy7164 2122 PIYERPLIITYFLLLVR----SAEAPREASKFLGHGVC--D-----YITKSSSLPMYISQASQILKEVLFIVNKLK-VDP 2189 (2307)
Q Consensus 2122 pt~~~~~L~~aA~~lL~----~i~~~~~~yr~~Gv~l~--d-----l~skq~~L~l~t~~~~~I~~e~~~L~r~~g-~~~ 2189 (2307)
++.+...+...++.++. ++-..+..-+.+.+.+. + ..+++..++.++++...|...+..||+++. ...
T Consensus 23 ~~~~~~~i~~~l~~l~~~l~~rL~~~~~~~~~i~l~l~~~~~~~~~~~~~~~~l~~p~~~~~~l~~~~~~l~~~~~~~~~ 102 (127)
T PF11799_consen 23 PISDREEIEEWLRELAEELAERLRERGLAARTITLKLRYSDFGRCSSRSRSIRLPFPTNDADELLKAARELLERLLYDPG 102 (127)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHCTEEEEEEEEEEEETTSCSCEEEEEEEEECCCEHCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhCcCCceEEEEEEecCCcccceeeEEEeccCCcCCHHHHHHHHHHHHHHHhcCCC
Confidence 34455555544444444 44444544555555553 3 334667788888899999999999996553 235
Q ss_pred ccEEEeeeeccCcc-ccccc
Q psy7164 2190 VELRGIGIQVSKLE-HQSKT 2208 (2307)
Q Consensus 2190 ~~lRgIGIq~skL~-~~S~~ 2208 (2307)
..+|+|||.+++|. .....
T Consensus 103 ~~vr~igv~~~~l~~~~~~~ 122 (127)
T PF11799_consen 103 FPVRLIGVSASDLIEPAGQR 122 (127)
T ss_dssp CGEEEEEEEEEEEEEC----
T ss_pred CCEEEEEEEECCCcCCCCCc
Confidence 67999999999998 44333
No 182
>PRK10547 chemotaxis protein CheA; Provisional
Probab=64.20 E-value=10 Score=52.34 Aligned_cols=44 Identities=14% Similarity=0.248 Sum_probs=32.2
Q ss_pred HHHHHHhhhhcccC---------CCCCeEEEEEEccCC--eEEEEeCCCCccccc
Q psy7164 89 DEILVNACDNKQRD---------PKMNCIKITVNQETN--TISVWNNGKGIPVVE 132 (2307)
Q Consensus 89 ~EILdNavDe~~r~---------g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~ 132 (2307)
-.+|.||+|+-... .....|.|....+++ .|+|.|||+|||.+.
T Consensus 391 ~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~ 445 (670)
T PRK10547 391 THLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRER 445 (670)
T ss_pred HHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEEcCCEEEEEEEeCCCCCCHHH
Confidence 47899999974321 234578888876555 588999999999764
No 183
>KOG0323|consensus
Probab=64.03 E-value=3.7 Score=55.38 Aligned_cols=93 Identities=19% Similarity=0.263 Sum_probs=68.3
Q ss_pred CCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCChhhHhhcCC--CCceeccCh
Q psy7164 1344 GIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKP--GDKIIKPEW 1421 (2307)
Q Consensus 1344 ~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~K~~~~k~--~~kIVkpeW 1421 (2307)
..++||.+.++|.+- . .......++-..-...|....++.+.++||+|+.+--..|..+-.. ..+||.+.|
T Consensus 440 ~v~~~~~~vfSg~~P--~-----~~~~~~s~~~~~~~~~g~vs~~~~~~~~th~i~~~~gt~k~~~a~~~~~~~Vv~~~w 512 (635)
T KOG0323|consen 440 KVLKGSQIVFSGLHP--T-----GSTDESADILGVAQQLGAVSAPDVSDKTTHLIAANAGTKKVYKAVVSGSAKVVNAAW 512 (635)
T ss_pred HHhhccceeeccccc--C-----cCCcchhhhhhhhhcccceecccccchhhhHHhhccCcceeeccccccceeEechhH
Confidence 578899999999762 1 1112223343444557888888999999999998865555544332 479999999
Q ss_pred HHHHHHhCCCCCCcCceeeecC
Q psy7164 1422 IVDSISAGKLLDHKKYLLYTGT 1443 (2307)
Q Consensus 1422 I~DSI~~gklLp~~~Y~l~~~~ 1443 (2307)
++.|+..=..+.+..|.+....
T Consensus 513 l~~~~e~w~~v~ek~~~l~~~~ 534 (635)
T KOG0323|consen 513 LWRSLEKWGKVEEKLEPLDDDQ 534 (635)
T ss_pred HHHHHHHhcchhcccccccccc
Confidence 9999999999999999888754
No 184
>PRK01172 ski2-like helicase; Provisional
Probab=62.22 E-value=6.8 Score=54.13 Aligned_cols=53 Identities=21% Similarity=0.254 Sum_probs=43.9
Q ss_pred cCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhh--hCcchHHHHHHHh
Q psy7164 1978 NIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNE--VGNKNGLTLYKHC 2030 (2307)
Q Consensus 1978 ~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~--fG~k~G~~L~~~a 2030 (2307)
.+|+-.|||||+..+++|.+.|++|+.||..++.+.+.+. +|.+.+..++..+
T Consensus 611 ~~~L~~ip~~~~~~a~~l~~~g~~~~~di~~~~~~~~~~i~~~~~~~~~~i~~~~ 665 (674)
T PRK01172 611 LIDLVLIPKVGRVRARRLYDAGFKTVDDIARSSPERIKKIYGFSDTLANAIVNRA 665 (674)
T ss_pred HHhhcCCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHhccCHHHHHHHHHHH
Confidence 3467789999999999999999999999999999999888 5555555555443
No 185
>KOG4362|consensus
Probab=61.43 E-value=8.6 Score=52.13 Aligned_cols=81 Identities=21% Similarity=0.412 Sum_probs=58.3
Q ss_pred cceEEEEeeeeccccccccccCCCCHHH-HHHHHHHcCCEEEEeccCCccEEEeCC-CChhhHhh------cCCCCceec
Q psy7164 1347 QGVAIFVNGYTKHCMMLDAYYIVPSAEE-LKALMMLHGGIYHHYESSRTTHIIASN-LPHTKIKK------LKPGDKIIK 1418 (2307)
Q Consensus 1347 ~G~~iyVnGyt~~~~~~~~~~~~ps~~e-L~~li~~hGG~~~~~l~~~vTHIIas~-l~~~K~~~------~k~~~kIVk 1418 (2307)
+-.+..++|-+ |+.-+ +....+. +...++...|||+|++. +...+..- +.+|.=|++
T Consensus 477 kk~~~~~s~l~------------p~ek~~v~~~a~~---t~~k~~~~~~thvi~~~~~~g~c~rTlk~~~gil~gkwi~~ 541 (684)
T KOG4362|consen 477 KKLVLLVSGLT------------PSEKQLVEKFAVD---TISKFWIEPVTHVIASTDLEGACLRTLKVLMGILRGKWILS 541 (684)
T ss_pred cceeeeeccCC------------cchHHHHHHHHHH---HHhhccCCCceeeeeecccccchhhhHHHHHHhhcCceeee
Confidence 34556679998 55544 4555555 77788889999999984 22222111 123677999
Q ss_pred cChHHHHHHhCCCCCCcCceeeec
Q psy7164 1419 PEWIVDSISAGKLLDHKKYLLYTG 1442 (2307)
Q Consensus 1419 peWI~DSI~~gklLp~~~Y~l~~~ 1442 (2307)
-.||+.|++.++++++.+|-|.-.
T Consensus 542 ~~w~~~s~k~~~~~~eepfEl~~d 565 (684)
T KOG4362|consen 542 YDWVLASLKLRKWVSEEPFELQID 565 (684)
T ss_pred HHHHHHHHHhcCCCCCCCeeEeec
Confidence 999999999999999999988653
No 186
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B.
Probab=59.43 E-value=6.7 Score=37.97 Aligned_cols=46 Identities=28% Similarity=0.477 Sum_probs=33.2
Q ss_pred CCCCChhHHHHHHh-cCCccchhhhcCCHHHHHhh--hCcchHHHHHHHhc
Q psy7164 1984 LPGVGHSLLFKLNS-LGAQTCGDLQNISLKRLQNE--VGNKNGLTLYKHCR 2031 (2307)
Q Consensus 1984 LpGIG~~~~~kL~~-lGI~TigDL~~lp~~~L~~~--fG~k~G~~L~~~ar 2031 (2307)
+||||..+++.|.+ +| ++..|.+.+.++|... +|++.+..++++.+
T Consensus 8 I~~VG~~~ak~L~~~f~--sl~~l~~a~~e~L~~i~gIG~~~A~si~~ff~ 56 (64)
T PF12826_consen 8 IPGVGEKTAKLLAKHFG--SLEALMNASVEELSAIPGIGPKIAQSIYEFFQ 56 (64)
T ss_dssp STT--HHHHHHHHHCCS--CHHHHCC--HHHHCTSTT--HHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHcC--CHHHHHHcCHHHHhccCCcCHHHHHHHHHHHC
Confidence 67999999999954 45 8899999999999887 88888888887764
No 187
>PRK07758 hypothetical protein; Provisional
Probab=57.07 E-value=12 Score=39.20 Aligned_cols=47 Identities=21% Similarity=0.121 Sum_probs=37.9
Q ss_pred CCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhh--hCcchHHHHHHH
Q psy7164 1983 DLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNE--VGNKNGLTLYKH 2029 (2307)
Q Consensus 1983 dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~--fG~k~G~~L~~~ 2029 (2307)
-+|+++-+...-|.+.||.|++||..++.++|.+. ||++....|-+.
T Consensus 38 ~~~~LSvRA~N~Lk~AGI~TL~dLv~~te~ELl~iknlGkKSL~EIkek 86 (95)
T PRK07758 38 FLSLLSAPARRALEHHGIHTVEELSKYSEKEILKLHGMGPASLPKLRKA 86 (95)
T ss_pred CCccccHHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHH
Confidence 36788999999999999999999999999998654 676655555433
No 188
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=54.16 E-value=22 Score=44.29 Aligned_cols=46 Identities=28% Similarity=0.450 Sum_probs=33.3
Q ss_pred chhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcccc
Q psy7164 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVV 131 (2307)
Q Consensus 82 pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd 131 (2307)
-+||+++.|.|.|-= |.-..+.|.|-+..+++ ..+|.|||+|.|+.
T Consensus 358 talyRv~QEaltNIE----rHa~Atrv~ill~~~~d~vql~vrDnG~GF~~~ 405 (459)
T COG4564 358 TALYRVVQEALTNIE----RHAGATRVTILLQQMGDMVQLMVRDNGVGFSVK 405 (459)
T ss_pred HHHHHHHHHHHHHHH----hhcCCeEEEEEeccCCcceEEEEecCCCCccch
Confidence 467777777776643 33346678888876555 77899999999986
No 189
>PF14229 DUF4332: Domain of unknown function (DUF4332)
Probab=53.56 E-value=15 Score=40.20 Aligned_cols=35 Identities=34% Similarity=0.550 Sum_probs=28.7
Q ss_pred CCCChhHHHHHHhcCCccchhhhcCCHH-----HHHhhhC
Q psy7164 1985 PGVGHSLLFKLNSLGAQTCGDLQNISLK-----RLQNEVG 2019 (2307)
Q Consensus 1985 pGIG~~~~~kL~~lGI~TigDL~~lp~~-----~L~~~fG 2019 (2307)
||||+..+++|+..||+|.+||...... .|....|
T Consensus 1 pgi~~~~~~~L~~~GI~t~~~Ll~~~~~~~~r~~La~~~~ 40 (122)
T PF14229_consen 1 PGIGPKEAAKLKAAGIKTTGDLLEAGDTPLGRKALAKKLG 40 (122)
T ss_pred CCCCHHHHHHHHHcCCCcHHHHHHcCCCHHHHHHHHHhcC
Confidence 7999999999999999999999976433 3555555
No 190
>PF02961 BAF: Barrier to autointegration factor; InterPro: IPR004122 Barrier-to-autointegration factor (BAF) is an essential protein that is highly conserved in metazoan evolution, and which may act as a DNA-bridging protein []. BAF binds directly to double-stranded DNA, to transcription activators, and to inner nuclear membrane proteins, including lamin A filament proteins that anchor nuclear-pore complexes in place, and nuclear LEM-domain proteins that bind to laminins filaments and chromatin. New findings suggest that BAF has structural roles in nuclear assembly and chromatin organisation, represses gene expression and might interlink chromatin structure, nuclear architecture and gene regulation in metazoans []. BAF can be exploited by retroviruses to act as a host component of pre-integration complexes, which promote the integration of the retroviral DNA into the host chromosome by preventing autointegration of retroviral DNA []. BAF might contribute to the assembly or activity of retroviral pre-integration complexes through direct binding to the retroviral proteins p55 Gag and matrix, as well as to DNA.; GO: 0003677 DNA binding; PDB: 2ODG_A 2BZF_A 2EZX_B 2EZY_B 1QCK_B 1CI4_B 2EZZ_B.
Probab=50.54 E-value=8.8 Score=39.54 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=22.8
Q ss_pred hhcCCCCCCCCCChhHHHHHHhcCCccchhhh
Q psy7164 1976 MLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQ 2007 (2307)
Q Consensus 1976 L~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~ 2007 (2307)
|.+=||.+|||||+.++.+|.+.|+..+..|.
T Consensus 16 MGeK~V~~laGIG~~lg~~L~~~GfdKAy~vL 47 (89)
T PF02961_consen 16 MGEKPVTELAGIGPVLGKRLEEKGFDKAYVVL 47 (89)
T ss_dssp -TT-BGGGSTT--HHHHHHHHHTT--BHHHHH
T ss_pred cCCCCccccCCcCHHHHHHHHHCCCcHHHHHh
Confidence 44568999999999999999999999876664
No 191
>KOG0020|consensus
Probab=50.25 E-value=19 Score=46.51 Aligned_cols=136 Identities=20% Similarity=0.246 Sum_probs=73.4
Q ss_pred HHHHHHHHhhhhc--cc-----C----C--CCCeEEEEEEccCCeEEEEeCCCCccccc-ccCCCccccEEEEEeecccc
Q psy7164 87 IFDEILVNACDNK--QR-----D----P--KMNCIKITVNQETNTISVWNNGKGIPVVE-HKDEKMFVPTMIFGHLLTSS 152 (2307)
Q Consensus 87 i~~EILdNavDe~--~r-----~----g--~~~~I~V~i~~d~gsIsV~DnGrGIPvd~-~~~~~~~~~E~vf~~L~ag~ 152 (2307)
.+.|+|.||-|.. +| + + ..=.|+|..+.+..-..|.|.|.|+.-.. ... +|++--+
T Consensus 99 FLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~DtGiGMT~edLi~N---------LGTIAkS- 168 (785)
T KOG0020|consen 99 FLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDTGIGMTREDLIKN---------LGTIAKS- 168 (785)
T ss_pred HHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEecccCCccHHHHHHh---------hhhhhcc-
Confidence 5789999999972 22 1 1 12256777777778999999999987431 111 1111111
Q ss_pred cCCCcccccccccccccccccccccCCCCCccccccCCCcccccccccccceeEEEEEeecccEEEEEEeecC-CCcCCC
Q psy7164 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDN-MSKVTS 231 (2307)
Q Consensus 153 k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g-~~~~~~ 231 (2307)
.+ .+|+.-|.=+ +. +.+.-.--.|+.|||.-.+=+.+.+..|++... +...|..+-.-| ..+...
T Consensus 169 --GT-----s~Fl~Km~~~-----~~-~~~~~~dlIGQFGVGFYsAfLVAD~vvVtsKhN-dD~QyiWESdan~FsvseD 234 (785)
T KOG0020|consen 169 --GT-----SEFLEKMQDS-----GD-SEGLMNDLIGQFGVGFYSAFLVADRVVVTSKHN-DDSQYIWESDANSFSVSED 234 (785)
T ss_pred --cH-----HHHHHHhhcc-----cc-chhhHHHHHHhcchhhhhhhhhcceEEEEeccC-CccceeeeccCcceeeecC
Confidence 01 1222111100 00 000112347999999998888999999988643 344444321111 111111
Q ss_pred ccccCCCCCCCcEEEEE
Q psy7164 232 PEIKSGSKDDFTKITFT 248 (2307)
Q Consensus 232 ~~i~~~~~~~GT~VtF~ 248 (2307)
| .+.+-.+||.|+..
T Consensus 235 p--rg~tL~RGt~ItL~ 249 (785)
T KOG0020|consen 235 P--RGNTLGRGTEITLY 249 (785)
T ss_pred C--CCCcccCccEEEEE
Confidence 1 12234689999987
No 192
>PRK03348 DNA polymerase IV; Provisional
Probab=50.16 E-value=66 Score=42.70 Aligned_cols=82 Identities=13% Similarity=0.154 Sum_probs=57.9
Q ss_pred CcCChhHHHHHHHHHHh----hhcCCCCCceEEeeee--cc--ccccccCCccCcchHHHHHHHHHHHHHhcCCCCccEE
Q psy7164 2122 PIYERPLIITYFLLLVR----SAEAPREASKFLGHGV--CD--YITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELR 2193 (2307)
Q Consensus 2122 pt~~~~~L~~aA~~lL~----~i~~~~~~yr~~Gv~l--~d--l~skq~~L~l~t~~~~~I~~e~~~L~r~~g~~~~~lR 2193 (2307)
+..+...+...+..++. ++...+...+.+.+.+ .+ ..+++.+++.++++...|+..+..++.+.. ....+|
T Consensus 257 ~i~~~~~l~~~L~~L~~~l~~rL~~~g~~~r~v~l~l~~~d~~~~srs~~l~~pt~d~~~L~~la~~ll~~~~-~~~~vR 335 (454)
T PRK03348 257 DLTTRAQLREAIERIAEHAHRRLLKDGRGARTVTVKLRKSDFSTLTRSATLPYATDDAAVLAATARRLLLDPD-EIGPIR 335 (454)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEEEEeCCCCccEEEEECCCCCCCHHHHHHHHHHHHHhhc-cCCCeE
Confidence 44455555544444444 4555566666555555 33 344777888899999999999999999875 346899
Q ss_pred EeeeeccCccc
Q psy7164 2194 GIGIQVSKLEH 2204 (2307)
Q Consensus 2194 gIGIq~skL~~ 2204 (2307)
++||.+++|.+
T Consensus 336 llgV~~s~l~~ 346 (454)
T PRK03348 336 LVGVGFSGLSD 346 (454)
T ss_pred EEEEEECCCCc
Confidence 99999999975
No 193
>TIGR03491 RecB family nuclease, putative, TM0106 family. Members of this uncharacterized protein family are found broadly but sporadically among bacteria. The N-terminal region is homologous to the Cas4 protein of CRISPR systems, although this protein family shows no signs of association with CRISPR repeats.
Probab=49.73 E-value=13 Score=49.29 Aligned_cols=60 Identities=28% Similarity=0.262 Sum_probs=44.4
Q ss_pred HHHHhhcCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHh--hhCcchHHHHHHHhc
Q psy7164 1972 ISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQN--EVGNKNGLTLYKHCR 2031 (2307)
Q Consensus 1972 v~~fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~--~fG~k~G~~L~~~ar 2031 (2307)
.......-+|+.|+||+.+...+|++.||.|+.||+..+...|.. .++..++.+|...++
T Consensus 200 ~~~~~~~~~lslv~gi~~~~~~~L~~~GI~ti~~La~~~~~~l~~~~~~~~~~~~~l~~qA~ 261 (457)
T TIGR03491 200 EAVAKEEGHLSLVPGIGPSRYRLLQELGIHTLEDLAAADPNDLEDFGEQGLGVAEQLVQQAR 261 (457)
T ss_pred HHHHHhcCCeeecCCCCHHHHHHHHHcCCCcHHHHhcCCccccccccccCHHHHHHHHHHHH
Confidence 334455678999999999999999999999999999987544544 345455555544443
No 194
>PRK03609 umuC DNA polymerase V subunit UmuC; Reviewed
Probab=49.11 E-value=46 Score=43.62 Aligned_cols=89 Identities=10% Similarity=0.079 Sum_probs=60.6
Q ss_pred CcCChhHHHHHHHHHHhh----hcCCCCCceEEeeee--ccc--------cccccCCccCcchHHHHHHHHHHHHHhcCC
Q psy7164 2122 PIYERPLIITYFLLLVRS----AEAPREASKFLGHGV--CDY--------ITKSSSLPMYISQASQILKEVLFIVNKLKV 2187 (2307)
Q Consensus 2122 pt~~~~~L~~aA~~lL~~----i~~~~~~yr~~Gv~l--~dl--------~skq~~L~l~t~~~~~I~~e~~~L~r~~g~ 2187 (2307)
+..+...+...+..+++. +-..+..-+.+.+.+ .++ .+.+.+++.++++...|+..+..+|++++.
T Consensus 256 ~~~~~~~l~~~l~~l~~~l~~rLr~~~~~~~~l~l~ir~~~~~~~~~~~~~~~~~~l~~pt~d~~~l~~~a~~ll~~~~~ 335 (422)
T PRK03609 256 RITDYESMRQAICSYAARAAEKLRGEHQYCRFISTFVKTSPFALNEPYYGNSASVKLLTPTQDSRDIIAAATRALDAIWR 335 (422)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHcCCcccEEEEEEEcCCccccCCCcCceeEEeCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 445666666666666554 334444444444432 232 245567888999999999999999999865
Q ss_pred CCccEEEeeeeccCccccccccc
Q psy7164 2188 DPVELRGIGIQVSKLEHQSKTLA 2210 (2307)
Q Consensus 2188 ~~~~lRgIGIq~skL~~~S~~~t 2210 (2307)
+...+|++||.+++|.+....+.
T Consensus 336 ~~~~~r~~GV~~~~l~~~~~~q~ 358 (422)
T PRK03609 336 DGHRYQKAGVMLGDFFSQGVAQL 358 (422)
T ss_pred CCCceEEeeEEEEeeccCCCcCc
Confidence 55679999999999987544433
No 195
>KOG0787|consensus
Probab=49.06 E-value=28 Score=44.32 Aligned_cols=107 Identities=26% Similarity=0.357 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCC-CCCCChhhhhhhcccchhhhcCCCcccccccccceeEEeeccccccccccccc-cc-chhHHHHHHH
Q psy7164 15 NGNGPSPKKKTP-ANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT-YV-PGLYKIFDEI 91 (2307)
Q Consensus 15 ~~~~~~~~~~~~-~~~~~~~~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~-~~-pGL~~i~~EI 91 (2307)
+|+++.|+.-+. -..-++.+.+ +...|-+|.==+||.+..- ....+.. + ..+.. |+ +=|++++.||
T Consensus 200 ~~kp~~~~~iG~I~~~c~v~~vi--~~a~e~ar~lCd~yy~~sP-----el~i~~~-~---a~~~~vyvPshL~ymlfEl 268 (414)
T KOG0787|consen 200 SGKPDHPRHIGIIDPRCSVKKVI--KDASENARFLCDQYYLNSP-----ELIIEGH-N---ALSFTVYVPSHLYYMLFEL 268 (414)
T ss_pred CCCCCCcceeeeeCCCCCHHHHH--HHHHHHHHHHHHHhccCCC-----eeEecCc-c---cccCccccchHHHHHHHHH
Confidence 455555555442 2244554433 3445666655566663321 1222211 1 12222 34 4599999999
Q ss_pred HHHhhhhcc----cCCC-CCeEEEEEE--ccCCeEEEEeCCCCccccc
Q psy7164 92 LVNACDNKQ----RDPK-MNCIKITVN--QETNTISVWNNGKGIPVVE 132 (2307)
Q Consensus 92 LdNavDe~~----r~g~-~~~I~V~i~--~d~gsIsV~DnGrGIPvd~ 132 (2307)
+-||.-... +++. -+.|+|+|- .+|-+|.|.|-|-|||-+.
T Consensus 269 fKNamrATve~h~~~~~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~ 316 (414)
T KOG0787|consen 269 FKNAMRATVEHHGDDGDELPPIKVTVAKGDEDLLIKISDRGGGVPHRD 316 (414)
T ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEecCCcceEEEEecCCCCcChhH
Confidence 999987632 3333 556777774 3456999999999999763
No 196
>PRK03103 DNA polymerase IV; Reviewed
Probab=48.15 E-value=46 Score=43.32 Aligned_cols=89 Identities=15% Similarity=0.166 Sum_probs=61.0
Q ss_pred CcCChhHHHHHHHHHHhhh----cCCCCCceEEeeee--cc--c---cccccCCccCcchHHHHHHHHHHHHHhcCCCCc
Q psy7164 2122 PIYERPLIITYFLLLVRSA----EAPREASKFLGHGV--CD--Y---ITKSSSLPMYISQASQILKEVLFIVNKLKVDPV 2190 (2307)
Q Consensus 2122 pt~~~~~L~~aA~~lL~~i----~~~~~~yr~~Gv~l--~d--l---~skq~~L~l~t~~~~~I~~e~~~L~r~~g~~~~ 2190 (2307)
+..+...|...+..+.+.+ -..+..-+.+.+.+ .+ . .+++..++.++++...|...+..+|.++. +..
T Consensus 259 ~~~~~~~l~~~l~~L~~~l~~rLr~~~~~~~~l~l~lr~~~~~~~~~~~~~~~l~~pt~~~~~l~~~~~~ll~~~~-~~~ 337 (409)
T PRK03103 259 DYRGFEEIKVVLLELCEEVCRRARAKGYMGRTVSVSLRGADFDWPTGFSRQMTLPEPTNLAMEVYEAACKLFHRHW-DGK 337 (409)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCceeEEEEEEEeCCCcCCCCcceeeecCCCCCCHHHHHHHHHHHHHhcc-cCC
Confidence 3445556665555555543 23333334444444 22 3 45667788899999999999999999986 567
Q ss_pred cEEEeeeeccCcccccccccc
Q psy7164 2191 ELRGIGIQVSKLEHQSKTLAT 2211 (2307)
Q Consensus 2191 ~lRgIGIq~skL~~~S~~~tT 2211 (2307)
.+|++||.+++|.+.+..+.+
T Consensus 338 ~vr~lgv~~~~l~~~~~~q~~ 358 (409)
T PRK03103 338 PVRRVGVTLSNLVSDDVWQLS 358 (409)
T ss_pred CceEEEEEEeCCCCCcccCCC
Confidence 899999999999976554443
No 197
>cd00424 PolY Y-family of DNA polymerases. Y-family DNA polymerases are a specialized subset of polymerases that facilitate translesion synthesis (TLS), a process that allows the bypass of a variety of DNA lesions. Unlike replicative polymerases, TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. The active sites of TLS polymerases are large and flexible to allow the accomodation of distorted bases. Most TLS polymerases are members of the Y-family, including Pol eta, Pol kappa/IV, Pol iota, Rev1, and Pol V, which is found exclusively in bacteria. In eukaryotes, the B-family polymerase Pol zeta also functions as a TLS polymerase. Expression of Y-family polymerases is often induced by DNA damage and is believed to be highly regulated. TLS is likely induced by the monoubiquitination of the replication clamp PCNA, which provides a scaffold for TLS polymerases to bind in ord
Probab=47.24 E-value=44 Score=42.45 Aligned_cols=78 Identities=17% Similarity=0.191 Sum_probs=52.3
Q ss_pred CcCChhHHHHHHHHHHhh----hcCCCCCceEEeeee--cc--------ccccccCCccCcchHHHHHHHHHHHHHhcCC
Q psy7164 2122 PIYERPLIITYFLLLVRS----AEAPREASKFLGHGV--CD--------YITKSSSLPMYISQASQILKEVLFIVNKLKV 2187 (2307)
Q Consensus 2122 pt~~~~~L~~aA~~lL~~----i~~~~~~yr~~Gv~l--~d--------l~skq~~L~l~t~~~~~I~~e~~~L~r~~g~ 2187 (2307)
+..+...+...++.+++. +...+..-+.+.+.+ .+ ..+++.+++.++ +...|++++..||+++..
T Consensus 250 ~~~~~~~l~~~l~~l~~~l~~rL~~~~~~~~~l~l~lr~~~~~~~~~~~~~~~~~~l~~~t-~~~~l~~~~~~l~~~~~~ 328 (343)
T cd00424 250 DSRNAEDARPLLRLLLEKLARRLRRDGRGATRLRLWLRTVDGRWSGHADIPSRSAPRPIST-EDGELLHALDKLWRALLD 328 (343)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHcCCceeEEEEEEEeCCCcccccceeeeeeeeCCCCC-CHHHHHHHHHHHHHhhhh
Confidence 444555555554444443 444444445444443 22 445788888889 889999999999999865
Q ss_pred --CCccEEEeeeecc
Q psy7164 2188 --DPVELRGIGIQVS 2200 (2307)
Q Consensus 2188 --~~~~lRgIGIq~s 2200 (2307)
+...+|++||+++
T Consensus 329 ~~~~~~ir~~gv~~~ 343 (343)
T cd00424 329 DKGPRRLRRLGVRLS 343 (343)
T ss_pred ccCCCCeeEEEEEeC
Confidence 4568999999874
No 198
>PRK14133 DNA polymerase IV; Provisional
Probab=47.12 E-value=46 Score=42.36 Aligned_cols=86 Identities=20% Similarity=0.231 Sum_probs=61.7
Q ss_pred CcCChhHHHHHHHHHHhh----hcCCCCCceEEeeee--cc--ccccccCCccCcchHHHHHHHHHHHHHhcCCCCccEE
Q psy7164 2122 PIYERPLIITYFLLLVRS----AEAPREASKFLGHGV--CD--YITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELR 2193 (2307)
Q Consensus 2122 pt~~~~~L~~aA~~lL~~----i~~~~~~yr~~Gv~l--~d--l~skq~~L~l~t~~~~~I~~e~~~L~r~~g~~~~~lR 2193 (2307)
++.+...+...++.+++. +...+-..+.+.+.+ .+ ..+++.+++.++++.+.|+..+..+++++..+ ..+|
T Consensus 249 ~~~~~~~l~~~l~~L~~~l~~rL~~~~~~~~~l~l~l~~~~~~~~~~~~~l~~~t~~~~~l~~l~~~lle~~~~~-~~vr 327 (347)
T PRK14133 249 DTKDKEELKKYLKDFSNIISEELKKRNLYGKTVTVKIKTSDFQTHTKSKTLNDYIRDKEEIYNVACEILEHINIK-EPIR 327 (347)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEEEEECCCCeeEEEEECCCCcCCHHHHHHHHHHHHHhccCC-CCEE
Confidence 555666666665555554 444555555555555 22 33467778889999999999999999998654 6899
Q ss_pred EeeeeccCccccccc
Q psy7164 2194 GIGIQVSKLEHQSKT 2208 (2307)
Q Consensus 2194 gIGIq~skL~~~S~~ 2208 (2307)
+|||++++|++....
T Consensus 328 ~lgl~~~~l~~~~~~ 342 (347)
T PRK14133 328 LIGLSVSNLSENKIE 342 (347)
T ss_pred EEEEEEecCCCCccc
Confidence 999999999975443
No 199
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins.
Probab=45.66 E-value=25 Score=43.78 Aligned_cols=62 Identities=19% Similarity=0.255 Sum_probs=52.7
Q ss_pred cCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhCc--chHHHHHHHhcCCCCCccc
Q psy7164 1978 NIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGN--KNGLTLYKHCRGEDDKELT 2039 (2307)
Q Consensus 1978 ~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG~--k~G~~L~~~arGiD~~~V~ 2039 (2307)
..|+..||++|....++|...|+.+++||..++.+.+...+|. ..|..+++.|+-...-.+.
T Consensus 150 ~~~L~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~l~v~ 213 (312)
T smart00611 150 DSPLLQLPHLPEEILKRLEKKKVLSLEDLLELEDEERGELLGLLDAEGERVYKVLSRLPKLNIE 213 (312)
T ss_pred CCccccCCCCCHHHHHHHHhCCCCCHHHHHhcCHHHHHHHHcCCHHHHHHHHHHHHhCCcceeE
Confidence 4688899999999999999999999999999999999888774 4688888888777655553
No 200
>KOG4362|consensus
Probab=45.37 E-value=20 Score=48.84 Aligned_cols=82 Identities=23% Similarity=0.489 Sum_probs=54.4
Q ss_pred CCCCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEecc-----CCc-cEEEeCCCC------hhhHh
Q psy7164 1341 SRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYES-----SRT-THIIASNLP------HTKIK 1408 (2307)
Q Consensus 1341 ~~~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~-----~~v-THIIas~l~------~~K~~ 1408 (2307)
.++.||.|+-||+-|-+. .++.++|..|+...||+...--. .+. |-++.+..+ ..|..
T Consensus 583 ~~~kLf~gl~~~~~g~fs----------~~p~~~l~~l~~~~gg~~l~~~~~~~~~~k~s~~~~~~~~~~~~~~~~~k~~ 652 (684)
T KOG4362|consen 583 YKPKLFEGLKFYFVGDFS----------NPPKEQLQELVHLAGGTILQVPRVAYSDKKKSTIVVLSEKPVLDSILWQKVN 652 (684)
T ss_pred cCcchhcCCcceeecccc----------cCcHHHHHHHHhhcCcceeeccCcccccccccceeEeecccCCCchhhhhhc
Confidence 456899999999966653 38899999999999999865321 222 333333221 11222
Q ss_pred hcC-----CCCceeccChHHHHHHhCCCC
Q psy7164 1409 KLK-----PGDKIIKPEWIVDSISAGKLL 1432 (2307)
Q Consensus 1409 ~~k-----~~~kIVkpeWI~DSI~~gklL 1432 (2307)
.+. .+-+.|+-.||+|||+-..++
T Consensus 653 ~~ea~~~s~~a~~~~~~wvl~s~a~~~~~ 681 (684)
T KOG4362|consen 653 DAEALALSQRARAVSSSWVLDSIAGYQIL 681 (684)
T ss_pred cHHHHHHhcCCCccchhhhhcchhceeee
Confidence 211 167899999999999854443
No 201
>PF00986 DNA_gyraseB_C: DNA gyrase B subunit, carboxyl terminus The Prosite motif does not match this Pfam entry.; InterPro: IPR002288 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions, domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents the C-terminal region (C-terminal part of domain 2) of subunit B found in topoisomerase II (gyrB) and topoisomerase IV (parE), which are primarily of bacterial origin. It does not include the topoisomerase II enzymes composed of a single polypeptide, as are found in most eukaryotes. This region is involved in subunit interaction, which accounts for the difference between subunit B and single polypeptide topoisomerase II. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 3LTN_D 3RAF_C 3FOF_C 3RAE_C 3KSA_D 3RAD_C 3FOE_D 3KSB_D 3K9F_D 2XCT_D ....
Probab=43.13 E-value=11 Score=37.03 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=9.6
Q ss_pred CccCcEEeccc
Q psy7164 623 HTYKIKYYKVV 633 (2307)
Q Consensus 623 ~~~~ikryKGL 633 (2307)
++++|+|||||
T Consensus 4 ~~~~I~RfKGL 14 (65)
T PF00986_consen 4 KKVEIQRFKGL 14 (65)
T ss_dssp TTTEEEESSSG
T ss_pred CCceeEEeccc
Confidence 57899999999
No 202
>smart00483 POLXc DNA polymerase X family. includes vertebrate polymerase beta and terminal deoxynucleotidyltransferases
Probab=42.66 E-value=17 Score=46.19 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=25.8
Q ss_pred CCCCCCCChhHHHHHHhcCCccchhhhcC
Q psy7164 1981 LSDLPGVGHSLLFKLNSLGAQTCGDLQNI 2009 (2307)
Q Consensus 1981 V~dLpGIG~~~~~kL~~lGI~TigDL~~l 2009 (2307)
+..+||||++++.+|..+||+|+.||...
T Consensus 91 l~~i~GiGpk~a~~l~~lGi~tl~eL~~a 119 (334)
T smart00483 91 FTNVFGVGPKTAAKWYRKGIRTLEELKKN 119 (334)
T ss_pred HHccCCcCHHHHHHHHHhCCCCHHHHHhc
Confidence 34699999999999988999999999864
No 203
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=42.63 E-value=24 Score=47.90 Aligned_cols=53 Identities=15% Similarity=0.109 Sum_probs=45.7
Q ss_pred cCCCCCCCCCChhHHHHH-HhcCCccchhhhcCCHHHHHhh-hCcchHHHHHHHhcC
Q psy7164 1978 NIPLSDLPGVGHSLLFKL-NSLGAQTCGDLQNISLKRLQNE-VGNKNGLTLYKHCRG 2032 (2307)
Q Consensus 1978 ~LPV~dLpGIG~~~~~kL-~~lGI~TigDL~~lp~~~L~~~-fG~k~G~~L~~~arG 2032 (2307)
.-.+.++||||++..++| ..+| ++..+...+.++|.+. +|.+.+..++++++|
T Consensus 513 ~S~Ld~I~GiG~kr~~~Ll~~Fg--s~~~ik~As~eeL~~vgi~~~~A~~I~~~l~~ 567 (567)
T PRK14667 513 KDILDKIKGIGEVKKEIIYRNFK--TLYDFLKADDEELKKLGIPPSVKQEVKKYLSG 567 (567)
T ss_pred cCccccCCCCCHHHHHHHHHHhC--CHHHHHhCCHHHHHHcCCCHHHHHHHHHHhcC
Confidence 357889999999999988 4554 8899999999999998 677899999999877
No 204
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X.
Probab=42.05 E-value=22 Score=44.28 Aligned_cols=61 Identities=26% Similarity=0.371 Sum_probs=45.7
Q ss_pred cCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhC--cchHHHHHHHhcCCCCCcc
Q psy7164 1978 NIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVG--NKNGLTLYKHCRGEDDKEL 2038 (2307)
Q Consensus 1978 ~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG--~k~G~~L~~~arGiD~~~V 2038 (2307)
+.|+..|||+|....++|...||.++.+|+.++..++...++ +..|..+.+.++....-.+
T Consensus 147 ~~~L~Qlp~i~~~~~~~l~~~~i~~l~~l~~~~~~e~~~ll~~~~~~~~~i~~~~~~~P~~~i 209 (314)
T PF02889_consen 147 DSPLLQLPHIGEESLKKLEKRGIKTLQDLRDLSPEELEELLNRNPPFGKEILEVASRIPRLEI 209 (314)
T ss_dssp S-GGGGSTT--HHHHHHHHHTT--SHHHHHHS-HHHHHHHH-S-HHHHHHHHHHHCCS--EEE
T ss_pred CChhhcCCCCCHHHHHHHhccCCCcHHHHhhCCHHHHHHHHhhhhhhHHHHHHHHHHCCCEEE
Confidence 457889999999999999999999999999999999999986 3568888888888765555
No 205
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=41.63 E-value=17 Score=46.50 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=44.6
Q ss_pred cCCCCCC--CCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhCc--chHHHHHHHhcCC
Q psy7164 1978 NIPLSDL--PGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGN--KNGLTLYKHCRGE 2033 (2307)
Q Consensus 1978 ~LPV~dL--pGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG~--k~G~~L~~~arGi 2033 (2307)
..+|.+| .||++.+.++|+..||+|+.||...++.+|.+..|- ....++...++-.
T Consensus 28 ~~~~~~l~~~g~~~~~~~kL~~~g~~tv~~~~~~~~~~L~~~~g~s~~~~~ki~~~a~~~ 87 (344)
T PLN03187 28 FESIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKL 87 (344)
T ss_pred ccCHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 5567777 679999999999999999999999999999988773 3345555444443
No 206
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=41.63 E-value=21 Score=50.34 Aligned_cols=51 Identities=25% Similarity=0.392 Sum_probs=45.8
Q ss_pred CCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhC-cchHHHHHHHhcCC
Q psy7164 1982 SDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVG-NKNGLTLYKHCRGE 2033 (2307)
Q Consensus 1982 ~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG-~k~G~~L~~~arGi 2033 (2307)
..|||||+..+.+|-.. +.++.+|.+++.++|...+| .+.|.++|+.++..
T Consensus 760 ~~lPgI~~~~a~~ll~~-f~si~~l~~as~eeL~~~iG~~~~A~~i~~fl~~~ 811 (814)
T TIGR00596 760 LKLPGVTKKNYRNLRKK-VKSIRELAKLSQNELNELIGDEEAAKRLYDFLRTE 811 (814)
T ss_pred HHCCCCCHHHHHHHHHH-cCCHHHHHhCCHHHHHHHhCCHHHHHHHHHHhccc
Confidence 36789999999999664 88999999999999999999 99999999998864
No 207
>PTZ00035 Rad51 protein; Provisional
Probab=41.25 E-value=16 Score=46.42 Aligned_cols=55 Identities=18% Similarity=0.137 Sum_probs=44.8
Q ss_pred CCCCCC--CCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhCc--chHHHHHHHhcCC
Q psy7164 1979 IPLSDL--PGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGN--KNGLTLYKHCRGE 2033 (2307)
Q Consensus 1979 LPV~dL--pGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG~--k~G~~L~~~arGi 2033 (2307)
.+|.+| +||+....++|+..||+|+.||...++..|.+..|- ..+.++...++-.
T Consensus 21 ~~~~~l~~~g~~~~~~~kL~~~g~~t~~~~~~~~~~~L~~~~gis~~~~~~i~~~~~~~ 79 (337)
T PTZ00035 21 QEIEKLQSAGINAADIKKLKEAGICTVESVAYATKKDLCNIKGISEAKVEKIKEAASKL 79 (337)
T ss_pred ccHHHHhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 367777 789999999999999999999999999999998884 2345666555544
No 208
>cd03586 PolY_Pol_IV_kappa DNA Polymerase IV/Kappa. Pol IV, also known as Pol kappa, DinB, and Dpo4, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Known primarily as Pol IV in prokaryotes and Pol kappa in eukaryotes, this polymerase has a propensity for generating frameshift mutations. The eukaryotic Pol kappa differs from Pol IV and Dpo4 by an N-terminal extension of ~75 residues known as the "N-clasp" region. The structure of Pol kappa shows DNA that is almost totally encircled by Pol kappa, with the N-clasp region augmenting the interactions between DNA and the polymerase. Pol kappa is more resistant than Pol eta and Pol iota to bulky guanine adducts and is efficient at catalyzing the incorporation of dCTP. Bacterial pol IV has a
Probab=41.24 E-value=64 Score=40.62 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=55.6
Q ss_pred CcCChhHHHHHHHHHHh----hhcCCCCCceEEeeee--c--cccccccCCccCcchHHHHHHHHHHHHHhcCCCCccEE
Q psy7164 2122 PIYERPLIITYFLLLVR----SAEAPREASKFLGHGV--C--DYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELR 2193 (2307)
Q Consensus 2122 pt~~~~~L~~aA~~lL~----~i~~~~~~yr~~Gv~l--~--dl~skq~~L~l~t~~~~~I~~e~~~L~r~~g~~~~~lR 2193 (2307)
+..+.+.+...+..+++ ++...+..-+.+.+.+ . ...+.+..++.++++...|++.+..++.++..+ ..+|
T Consensus 247 ~~~~~~~l~~~l~~l~~~l~~rL~~~~~~~~~l~l~l~~~~~~~~~~~~~l~~~t~~~~~l~~~~~~~l~~~~~~-~~vr 325 (334)
T cd03586 247 DLTDPEELLEELLELAEELAERLRKRGLKGRTVTVKLKYADFSTRTRSRTLPEPTDDAEDIYELALELLEELLDG-RPIR 325 (334)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCCeEEEEEECCCCCCCHHHHHHHHHHHHHhccCC-CCEE
Confidence 44455555555554444 4444555555555554 2 234466778888999999999999999998765 8899
Q ss_pred EeeeeccCc
Q psy7164 2194 GIGIQVSKL 2202 (2307)
Q Consensus 2194 gIGIq~skL 2202 (2307)
+|||++++|
T Consensus 326 ~igv~~~~l 334 (334)
T cd03586 326 LLGVRLSGL 334 (334)
T ss_pred EEEEEeecC
Confidence 999999875
No 209
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=40.96 E-value=40 Score=44.21 Aligned_cols=46 Identities=28% Similarity=0.312 Sum_probs=32.3
Q ss_pred HHHHHHHHhhhhcccCCC-CCeEEEEEEccCC--eEEEEeCCCCccccc
Q psy7164 87 IFDEILVNACDNKQRDPK-MNCIKITVNQETN--TISVWNNGKGIPVVE 132 (2307)
Q Consensus 87 i~~EILdNavDe~~r~g~-~~~I~V~i~~d~g--sIsV~DnGrGIPvd~ 132 (2307)
++.=++.||+-+..+... ...|.|.+..+|+ .|.|+|||+||+.+.
T Consensus 460 ilQPLVENAIKHG~~~~~~~g~V~I~V~~~d~~l~i~VeDng~li~p~~ 508 (557)
T COG3275 460 ILQPLVENAIKHGISQLKDTGRVTISVEKEDADLRIEVEDNGGLIQPDE 508 (557)
T ss_pred hhhHHHHHHHHhcccchhcCCceEEEEEEeCCeEEEEEecCCCCcCCCC
Confidence 577788999988654321 2356666655555 788999999999863
No 210
>COG3377 Uncharacterized conserved protein [Function unknown]
Probab=38.63 E-value=15 Score=37.83 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.0
Q ss_pred hcccCCHHHHHcCCCCCCcHHHHHHh
Q psy7164 1670 TMNRMGLNTREYGLGNGMFVGHALKK 1695 (2307)
Q Consensus 1670 ~i~scNY~AR~~GVk~GM~l~~A~kL 1695 (2307)
.|+++.++|-+.||+.||.+++|+.+
T Consensus 69 ~i~evT~~Ae~lGI~~Gm~~r~aL~k 94 (95)
T COG3377 69 PIVEVTSAAEELGIKRGMKGREALEK 94 (95)
T ss_pred hHHHHHHHHHHhCCCccchHHHHHhc
Confidence 46678899999999999999999865
No 211
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=36.63 E-value=29 Score=43.80 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=33.1
Q ss_pred CCChhHHHHHHhcCCccchhhhcCCHHHHHhhhCc
Q psy7164 1986 GVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGN 2020 (2307)
Q Consensus 1986 GIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG~ 2020 (2307)
||+..+.++|++.||.|+.||...++..|.+.+|-
T Consensus 8 ~~~~~~~~~l~~~g~~t~~~~~~~~~~~L~~i~~l 42 (316)
T TIGR02239 8 GITAADIKKLQEAGLHTVESVAYAPKKQLLEIKGI 42 (316)
T ss_pred CCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHHhCC
Confidence 59999999999999999999999999999998884
No 212
>PRK01810 DNA polymerase IV; Validated
Probab=36.33 E-value=81 Score=41.12 Aligned_cols=83 Identities=18% Similarity=0.170 Sum_probs=58.3
Q ss_pred CcCChhHHHHHHHHHHhh----hcCCCCCceEEeeee--cc--ccccccCCccCcchHHHHHHHHHHHHHhcCCCCccEE
Q psy7164 2122 PIYERPLIITYFLLLVRS----AEAPREASKFLGHGV--CD--YITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELR 2193 (2307)
Q Consensus 2122 pt~~~~~L~~aA~~lL~~----i~~~~~~yr~~Gv~l--~d--l~skq~~L~l~t~~~~~I~~e~~~L~r~~g~~~~~lR 2193 (2307)
+..+...+...+..+++. +-..+..-+.+.+.+ .+ ..+++..++.++++...|+..+..+|+++. ....+|
T Consensus 257 ~~~~~~~l~~~l~~L~~~l~~rLr~~~~~~~~l~l~lr~~~~~~~~~~~~l~~pt~~~~~l~~~~~~ll~~~~-~~~~vr 335 (407)
T PRK01810 257 DMDEEKELLDVLRRLSKSVSKRLQKKTVVSYNVQIMIRYHDRRTITRSKTLKNPIWEKRDIFQAASRLFKQHW-NGDPVR 335 (407)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHcCCccceeEEEEEECCCCceEEEEECCCCCCCHHHHHHHHHHHHHhcc-CCCCEE
Confidence 445556555555555554 444444555555544 23 344677788899999999999999999985 456899
Q ss_pred EeeeeccCcccc
Q psy7164 2194 GIGIQVSKLEHQ 2205 (2307)
Q Consensus 2194 gIGIq~skL~~~ 2205 (2307)
++||.+++|.+.
T Consensus 336 ~lgv~~~~l~~~ 347 (407)
T PRK01810 336 LLGVTATDLEWK 347 (407)
T ss_pred EEEEEEecCccc
Confidence 999999999875
No 213
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=36.17 E-value=36 Score=47.41 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=31.9
Q ss_pred HHHHhhhhccc-------CC--CCCeEEEEEEccCC--eEEEEeCCCCccccccc
Q psy7164 91 ILVNACDNKQR-------DP--KMNCIKITVNQETN--TISVWNNGKGIPVVEHK 134 (2307)
Q Consensus 91 ILdNavDe~~r-------~g--~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~~ 134 (2307)
+|-||+|+=+. +| ...+|.+.-...+| .|+|.|||+||..+...
T Consensus 440 LvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~ 494 (716)
T COG0643 440 LVRNAVDHGIETPEERRAAGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIR 494 (716)
T ss_pred HHhcchhccCCCHHHHHHcCCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHH
Confidence 45688887432 34 35578888777666 77899999999987653
No 214
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=35.13 E-value=33 Score=43.36 Aligned_cols=50 Identities=18% Similarity=0.135 Sum_probs=39.6
Q ss_pred CCC--CCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhCc--chHHHHHHHhc
Q psy7164 1982 SDL--PGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGN--KNGLTLYKHCR 2031 (2307)
Q Consensus 1982 ~dL--pGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG~--k~G~~L~~~ar 2031 (2307)
.+| .||+..+.++|+..||.|+.||...++.+|.+..|- ....++.+.++
T Consensus 2 ~~~~~~g~~~~~~~~L~~~g~~t~~~~~~~~~~~L~~~~gls~~~~~~i~~~~~ 55 (313)
T TIGR02238 2 DKLQAHGINAADIKKLKSAGICTVNGVIMTTRRALCKIKGLSEAKVDKIKEAAS 55 (313)
T ss_pred chhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHHHHHHH
Confidence 445 479999999999999999999999999999998873 23444444443
No 215
>PRK05560 DNA gyrase subunit A; Validated
Probab=34.90 E-value=92 Score=44.35 Aligned_cols=89 Identities=15% Similarity=0.043 Sum_probs=43.4
Q ss_pred HHHHHHHHHH----HHHHHHh-------hhhHHHhhcc--cCCCchHHHHHHHhhccccccccccCCCCCCChhhHHHHH
Q psy7164 790 PKSYKIDDDS----EEEEIEE-------VFHDNELAKP--QKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLL 856 (2307)
Q Consensus 790 ~eF~~~Rl~~----y~rr~e~-------l~ni~~li~~--~~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~q~dyIL 856 (2307)
.+++.-|.++ +++|++. +.+++++|++ ...+...+.....+.....+.+ .....+-....|-
T Consensus 354 ~~~~~~r~~~~l~~~~~~~~~l~g~~~~~~~~d~vI~iir~s~~~~~~~~~L~~~f~~~~~q-----a~~IL~m~L~~LT 428 (805)
T PRK05560 354 KEVITRRTRFELRKAEERAHILEGLLIALDNIDEVIALIRASPTPAEAKEGLMERFGLSEIQ-----AQAILDMRLQRLT 428 (805)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHcCCCHHHHHHHHHHhcCCCHHH-----HHHHHHhHHHHHh
Confidence 4455555444 4444333 5567888876 3333333443333332222222 0112222334444
Q ss_pred cCccccccHHHHHHHHHHHHHHHHHHHH
Q psy7164 857 GMTFWSLTMERKNELLKKRDDKMTELNI 884 (2307)
Q Consensus 857 ~M~L~rLT~ee~~kL~~E~~el~~ei~~ 884 (2307)
.+-...| ..|.++|++|+++++.-++.
T Consensus 429 ~~e~~kL-~~E~~~l~~ei~~l~~iL~~ 455 (805)
T PRK05560 429 GLERDKI-EDEYKELLALIADLKDILAS 455 (805)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHhCC
Confidence 4444455 56777787777777755443
No 216
>PRK02794 DNA polymerase IV; Provisional
Probab=33.71 E-value=95 Score=40.74 Aligned_cols=85 Identities=20% Similarity=0.203 Sum_probs=59.8
Q ss_pred CcCChhHHHHHHHHHHhh----hcCCCCCceEEeeee--ccc--cccccCCccCcchHHHHHHHHHHHHHhcCCCCccEE
Q psy7164 2122 PIYERPLIITYFLLLVRS----AEAPREASKFLGHGV--CDY--ITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELR 2193 (2307)
Q Consensus 2122 pt~~~~~L~~aA~~lL~~----i~~~~~~yr~~Gv~l--~dl--~skq~~L~l~t~~~~~I~~e~~~L~r~~g~~~~~lR 2193 (2307)
++.+...+...+..+++. +...+...+.+.+.+ .++ .+++..++.++++.+.|+..+..++.++. ....+|
T Consensus 285 ~~~~~~~l~~~l~~L~~~l~~rL~~~~~~~~~l~l~l~~~~~~~~~~~~~l~~pt~~~~~l~~~~~~ll~~~~-~~~~vr 363 (419)
T PRK02794 285 DLSDFEDLEPILWRLSEKVSRRLKAAGLAGRTVTLKLKTADFRLRTRRRTLEDPTQLADRIFRTARELLEKET-DGTAFR 363 (419)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEEEEECCCCceEEEEECCCCcCCHHHHHHHHHHHHHhcc-cCCCEE
Confidence 444556555555555554 444555555555554 222 34677788899999999999999999984 456899
Q ss_pred EeeeeccCcccccc
Q psy7164 2194 GIGIQVSKLEHQSK 2207 (2307)
Q Consensus 2194 gIGIq~skL~~~S~ 2207 (2307)
+|||.+++|.+...
T Consensus 364 ~igv~~~~l~~~~~ 377 (419)
T PRK02794 364 LIGIGVSDLSPADE 377 (419)
T ss_pred EEEEEEecCCCccc
Confidence 99999999987544
No 217
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=31.57 E-value=42 Score=46.55 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=40.2
Q ss_pred CCCCCChhHHHHHHh-cCCccchhhhcCCHHHHHh--hhCcchHHHHHHHhc
Q psy7164 1983 DLPGVGHSLLFKLNS-LGAQTCGDLQNISLKRLQN--EVGNKNGLTLYKHCR 2031 (2307)
Q Consensus 1983 dLpGIG~~~~~kL~~-lGI~TigDL~~lp~~~L~~--~fG~k~G~~L~~~ar 2031 (2307)
+++|+|+++.++|-. .+|.++.||..+..+.|.. .||.+....|++...
T Consensus 449 ~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~ll~~Ie 500 (665)
T PRK07956 449 DIDGLGEKIIEQLFEKGLIHDPADLFKLTAEDLLGLEGFGEKSAQNLLDAIE 500 (665)
T ss_pred CCCCcCHHHHHHHHHcCCCCCHHHHHhcCHHHHhcCcCcchHHHHHHHHHHH
Confidence 488999999999955 6789999999999888876 588888887765443
No 218
>PRK08609 hypothetical protein; Provisional
Probab=31.23 E-value=30 Score=47.20 Aligned_cols=41 Identities=29% Similarity=0.445 Sum_probs=30.0
Q ss_pred CCCCCChhHHHHHH-hcCCccchhhhcCCH-HHHHh--hhCcchH
Q psy7164 1983 DLPGVGHSLLFKLN-SLGAQTCGDLQNISL-KRLQN--EVGNKNG 2023 (2307)
Q Consensus 1983 dLpGIG~~~~~kL~-~lGI~TigDL~~lp~-~~L~~--~fG~k~G 2023 (2307)
.+||||++++.+|. .+||+|+.||...-. ..|.. .||.++.
T Consensus 92 ~i~GiGpk~a~~l~~~lGi~tl~~L~~a~~~~~~~~~~gfg~k~~ 136 (570)
T PRK08609 92 KLPGLGGKKIAKLYKELGVVDKESLKEACENGKVQALAGFGKKTE 136 (570)
T ss_pred cCCCCCHHHHHHHHHHhCCCCHHHHHHHHHhCChhhccCcchhHH
Confidence 69999999999996 799999999986432 22332 3665543
No 219
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=30.95 E-value=28 Score=44.47 Aligned_cols=42 Identities=26% Similarity=0.331 Sum_probs=38.2
Q ss_pred CCCCCC--CCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhCc
Q psy7164 1979 IPLSDL--PGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGN 2020 (2307)
Q Consensus 1979 LPV~dL--pGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG~ 2020 (2307)
.+|++| .||+....++|++.|+.|+.||...++..|.+.+|-
T Consensus 26 ~~~~~l~~~gi~~~~i~kL~~~g~~T~~~~~~~~~~~L~~i~~i 69 (342)
T PLN03186 26 FPIEQLQASGIAALDIKKLKDAGIHTVESLAYAPKKDLLQIKGI 69 (342)
T ss_pred ccHHHHHhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCC
Confidence 467777 679999999999999999999999999999999985
No 220
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases. X family polymerases fill in short gaps during DNA repair. They are relatively inaccurate enzymes and play roles in base excision repair, in non-homologous end joining (NHEJ) which acts mainly to repair damage due to ionizing radiation, and in V(D)J recombination. This family includes eukaryotic Pol beta, Pol lambda, Pol mu, and terminal deoxyribonucleotidyl transferase (TdT). Pol beta and Pol lambda are primarily DNA template-dependent polymerases. TdT is a DNA template-independent polymerase. Pol mu has both template dependent and template independent activities. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These three carboxylate residues are fairly well conserved in this
Probab=30.88 E-value=30 Score=43.55 Aligned_cols=28 Identities=39% Similarity=0.532 Sum_probs=25.5
Q ss_pred CCCCCCChhHHHHHHhcCCccchhhhcC
Q psy7164 1982 SDLPGVGHSLLFKLNSLGAQTCGDLQNI 2009 (2307)
Q Consensus 1982 ~dLpGIG~~~~~kL~~lGI~TigDL~~l 2009 (2307)
..+||||++++++|..+||+|+.||...
T Consensus 88 ~~i~GiGpk~a~~l~~lGi~sl~dL~~a 115 (307)
T cd00141 88 LRVPGVGPKTARKLYELGIRTLEDLRKA 115 (307)
T ss_pred HcCCCCCHHHHHHHHHcCCCCHHHHHHH
Confidence 4599999999999999999999999863
No 221
>PRK03352 DNA polymerase IV; Validated
Probab=29.97 E-value=1.1e+02 Score=38.97 Aligned_cols=82 Identities=16% Similarity=0.157 Sum_probs=57.9
Q ss_pred CcCChhHHHHHHHHHHhh----hcCCCCCceEEeeee--cc--ccccccCCccCcchHHHHHHHHHHHHHhcCCCCccEE
Q psy7164 2122 PIYERPLIITYFLLLVRS----AEAPREASKFLGHGV--CD--YITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELR 2193 (2307)
Q Consensus 2122 pt~~~~~L~~aA~~lL~~----i~~~~~~yr~~Gv~l--~d--l~skq~~L~l~t~~~~~I~~e~~~L~r~~g~~~~~lR 2193 (2307)
++.+...+...++.+++. +...+...+.+.+.+ .+ ..+.+..++.++++.+.|+..+..+++++.. ...+|
T Consensus 255 ~~~~~~~l~~~l~~L~~~l~~rLr~~~~~~~~l~l~l~~~~~~~~~~~~~l~~pt~d~~~l~~~~~~ll~~~~~-~~~vr 333 (346)
T PRK03352 255 DLTDRAEVESAVRELARRVLDEVVAEGRPVTRVAVKVRTATFYTRTKIRKLPEPTTDPDVIEAAALDVLDRFEL-DRPVR 333 (346)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHcCCccceEEEEEEeCCCceeEEEEECCCCcCCHHHHHHHHHHHHHhccC-CCCEE
Confidence 444555666555555554 444555555555544 33 2346677888999999999999999999864 46799
Q ss_pred EeeeeccCccc
Q psy7164 2194 GIGIQVSKLEH 2204 (2307)
Q Consensus 2194 gIGIq~skL~~ 2204 (2307)
+|||++.+|.+
T Consensus 334 ~igl~~~~~~~ 344 (346)
T PRK03352 334 LLGVRLELAMP 344 (346)
T ss_pred EEEEEEeccCC
Confidence 99999999875
No 222
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=29.42 E-value=1.2e+02 Score=42.80 Aligned_cols=70 Identities=16% Similarity=0.042 Sum_probs=34.1
Q ss_pred hhhHHHhhcc--cCCCchHHHHHHHhhccccccccccCCCCCCChhhHHHHHcCccccccHHHHHHHHHHHHHHHHHH
Q psy7164 807 VFHDNELAKP--QKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTEL 882 (2307)
Q Consensus 807 l~ni~~li~~--~~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~el~~ei 882 (2307)
+.+++++|++ ...+...+...........+.+. ....+-....|-.+-...|. .|.++|++|+++++.-+
T Consensus 379 ~~~id~~i~iir~~~~~~~~~~~l~~~f~~~~~q~-----~~il~m~l~~lt~~e~~kl~-~e~~~l~~~i~~l~~iL 450 (738)
T TIGR01061 379 ISIIDEIIKLIRSSEDKSDAKENLIDNFKFTENQA-----EAIVSLRLYRLTNTDIFELK-EEQNELEKKIISLEQII 450 (738)
T ss_pred HHhhhhHhHHHHcCCCHHHHHHHHHHhcCCCHHHH-----HHHHhhHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 5568888887 44444445554444323332221 11112223333344443443 45677777777776533
No 223
>PRK03858 DNA polymerase IV; Validated
Probab=28.17 E-value=1.4e+02 Score=38.78 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=61.3
Q ss_pred CcCChhHHHHHHHHHHhh----hcCCCCCceEEeeee--cc--ccccccCCccCcchHHHHHHHHHHHHHhcC--CCCcc
Q psy7164 2122 PIYERPLIITYFLLLVRS----AEAPREASKFLGHGV--CD--YITKSSSLPMYISQASQILKEVLFIVNKLK--VDPVE 2191 (2307)
Q Consensus 2122 pt~~~~~L~~aA~~lL~~----i~~~~~~yr~~Gv~l--~d--l~skq~~L~l~t~~~~~I~~e~~~L~r~~g--~~~~~ 2191 (2307)
+..+...+...++.+++. +...+...+.+.+.+ .+ ..+++..++.++++...|.+.+..+++++. .....
T Consensus 250 ~~~~~~~l~~~l~~L~~~l~~rLr~~~~~~~~l~l~l~~~~~~~~~~~~~l~~~t~~~~~l~~l~~~ll~~~~~~~~~~~ 329 (396)
T PRK03858 250 GPNSPAEVDAVVVALVDRVARRMRAAGRTGRTVVLRLRFDDFTRATRSHTLPRPTASTATLLAAARDLVAAAAPLIAERG 329 (396)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEEEEeCCCCEEEEEEECCCCcCCHHHHHHHHHHHHHhhhhccCCCC
Confidence 445666666666655554 344555555555544 23 344667788899999999999999999863 23467
Q ss_pred EEEeeeeccCcccccccccc
Q psy7164 2192 LRGIGIQVSKLEHQSKTLAT 2211 (2307)
Q Consensus 2192 lRgIGIq~skL~~~S~~~tT 2211 (2307)
+|.+||.+++|.+....+.+
T Consensus 330 irligv~~~~l~~~~~~q~~ 349 (396)
T PRK03858 330 LTLVGFAVSNLDDDGAQQLE 349 (396)
T ss_pred eEEEEEEeecCCcccccccC
Confidence 99999999999876544433
No 224
>KOG3524|consensus
Probab=27.90 E-value=34 Score=46.25 Aligned_cols=88 Identities=23% Similarity=0.417 Sum_probs=64.9
Q ss_pred CCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCC-hhhHhhcCCCCceeccCh
Q psy7164 1343 GGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLP-HTKIKKLKPGDKIIKPEW 1421 (2307)
Q Consensus 1343 ~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~-~~K~~~~k~~~kIVkpeW 1421 (2307)
-..|.|+.|++-||-+ --...+-......||.+.. -+..+|||+...-. .-+...-..+-.+|+.+|
T Consensus 208 l~~feg~~~~f~gF~~-----------ee~~~m~~sle~~gg~~a~-~d~~cthvvv~e~~~~~~p~~~s~~~~~vk~ew 275 (850)
T KOG3524|consen 208 LGVFEGLSLFFHGFKQ-----------EEIDDMLRSLENTGGKLAP-SDTLCTHVVVNEDNDEVEPLAVSSNQVHVKKEW 275 (850)
T ss_pred cccccCCeEeecCCcH-----------HHHHHHHHHHHhcCCcccC-CCCCceeEeecCCccccccccccccceeecccc
Confidence 3689999999999986 3344566677779999988 55679999987422 112222222567999999
Q ss_pred HHHHHHhCCCCCCcCceeeec
Q psy7164 1422 IVDSISAGKLLDHKKYLLYTG 1442 (2307)
Q Consensus 1422 I~DSI~~gklLp~~~Y~l~~~ 1442 (2307)
--=+|..|...-+..|++-.+
T Consensus 276 fw~siq~g~~a~e~~yl~~~~ 296 (850)
T KOG3524|consen 276 FWVSIQRGCCAIEDNYLLPTG 296 (850)
T ss_pred eEEEEecchhccccceecccc
Confidence 999999998888888877554
No 225
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=27.84 E-value=55 Score=44.63 Aligned_cols=53 Identities=19% Similarity=0.321 Sum_probs=44.5
Q ss_pred cCCCCCCCCCChhHHHHH-HhcCCccchhhhcCCHHHHHhh--hCcchHHHHHHHhcC
Q psy7164 1978 NIPLSDLPGVGHSLLFKL-NSLGAQTCGDLQNISLKRLQNE--VGNKNGLTLYKHCRG 2032 (2307)
Q Consensus 1978 ~LPV~dLpGIG~~~~~kL-~~lGI~TigDL~~lp~~~L~~~--fG~k~G~~L~~~arG 2032 (2307)
...+.++||||++..++| +.+| ++..++..+.++|.+. ++.+.+..++.+++-
T Consensus 513 ~s~L~~I~GiG~kr~~~LL~~Fg--s~~~I~~As~eeL~~v~gi~~~~A~~I~~~l~~ 568 (574)
T PRK14670 513 KLNYTKIKGIGEKKAKKILKSLG--TYKDILLLNEDEIAEKMKINIKMAKKIKKFAEK 568 (574)
T ss_pred ccccccCCCCCHHHHHHHHHHhC--CHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 347889999999999988 5554 8899999999999998 777789999888754
No 226
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed
Probab=27.18 E-value=44 Score=39.33 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=42.8
Q ss_pred CCCCCCCChhHHHHH-HhcCCccch-hhhcCCHHHHHhh--hCcchHHHHHHHhcCCCC
Q psy7164 1981 LSDLPGVGHSLLFKL-NSLGAQTCG-DLQNISLKRLQNE--VGNKNGLTLYKHCRGEDD 2035 (2307)
Q Consensus 1981 V~dLpGIG~~~~~kL-~~lGI~Tig-DL~~lp~~~L~~~--fG~k~G~~L~~~arGiD~ 2035 (2307)
+..+||||++++.++ ..+|..++. .+..-+...|.+. +|++++++++..+++...
T Consensus 75 L~~i~GIGpk~A~~il~~fg~~~l~~~i~~~d~~~L~~v~Gig~k~A~~I~~~l~~~~~ 133 (192)
T PRK00116 75 LISVSGVGPKLALAILSGLSPEELVQAIANGDVKALTKVPGIGKKTAERIVLELKDKLA 133 (192)
T ss_pred HhcCCCCCHHHHHHHHHhCCHHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHHHhh
Confidence 456899999999987 557876553 3556688888776 888999999998887653
No 227
>PRK13711 conjugal transfer protein TrbJ; Provisional
Probab=26.39 E-value=31 Score=34.92 Aligned_cols=19 Identities=42% Similarity=0.777 Sum_probs=15.4
Q ss_pred eeeecCCCceeecc--cCCCC
Q psy7164 671 MVLVNGAEGIGTGW--MTKIP 689 (2307)
Q Consensus 671 ~LLVNGasGIAvGm--ATnIP 689 (2307)
.||+-|.+|||||. |-|||
T Consensus 27 vlliagisgiatgiivslnip 47 (113)
T PRK13711 27 VLLIAGISGIATGIIVSLNIP 47 (113)
T ss_pred EEEEeccccceeeEEEEecch
Confidence 47899999999996 45665
No 228
>PRK12278 50S ribosomal protein L21/unknown domain fusion protein; Provisional
Probab=26.35 E-value=49 Score=39.84 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=33.1
Q ss_pred CCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHh
Q psy7164 1980 PLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQN 2016 (2307)
Q Consensus 1980 PV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~ 2016 (2307)
.+..+.|||+.+.++|+..||.+..||+.++.+.+..
T Consensus 159 DL~~I~GIGp~~a~~L~eaGi~tfaQIAa~t~a~ia~ 195 (221)
T PRK12278 159 DLTKITGVGPALAKKLNEAGVTTFAQIAALTDADIAK 195 (221)
T ss_pred hheeccccChHHHHHHHHcCCCCHHHhhCCChhhhhh
Confidence 4778999999999999999999999999998876653
No 229
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=26.25 E-value=60 Score=45.03 Aligned_cols=49 Identities=20% Similarity=0.329 Sum_probs=40.1
Q ss_pred CCCCCChhHHHHHHh-cCCccchhhhcCCHHHHHh--hhCcchHHHHHHHhc
Q psy7164 1983 DLPGVGHSLLFKLNS-LGAQTCGDLQNISLKRLQN--EVGNKNGLTLYKHCR 2031 (2307)
Q Consensus 1983 dLpGIG~~~~~kL~~-lGI~TigDL~~lp~~~L~~--~fG~k~G~~L~~~ar 2031 (2307)
+++|+|.++.++|-. .+|+++.||..+..+.|.. .||.+.+..|++.+.
T Consensus 436 ~I~GLG~k~i~~L~~~g~I~~~~Dl~~L~~~~L~~L~GfG~Ksa~nIl~~Ie 487 (652)
T TIGR00575 436 DIEGLGDKVIEQLFEKKLVRSVADLYALKKEDLLELEGFGEKSAQNLLNAIE 487 (652)
T ss_pred CCCCcCHHHHHHHHHcCCcCCHHHHHhcCHHHHhhccCccHHHHHHHHHHHH
Confidence 488999999999965 5689999999999888876 478888887776555
No 230
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=26.18 E-value=38 Score=47.16 Aligned_cols=30 Identities=43% Similarity=0.545 Sum_probs=28.0
Q ss_pred CCCCCCCCCChhHHHHHHhcCCccchhhhc
Q psy7164 1979 IPLSDLPGVGHSLLFKLNSLGAQTCGDLQN 2008 (2307)
Q Consensus 1979 LPV~dLpGIG~~~~~kL~~lGI~TigDL~~ 2008 (2307)
.||..|.|||++.++.|+++||.|+.||..
T Consensus 9 ~~~~~l~gvg~~~~~~l~~lgi~t~~dll~ 38 (681)
T PRK10917 9 APLTSLKGVGPKTAEKLAKLGIHTVQDLLL 38 (681)
T ss_pred CChhhcCCCCHHHHHHHHHcCCCCHHHHhh
Confidence 489999999999999999999999999974
No 231
>PRK04017 hypothetical protein; Provisional
Probab=25.97 E-value=50 Score=36.83 Aligned_cols=29 Identities=21% Similarity=0.426 Sum_probs=25.6
Q ss_pred CCCcEEecccCCCCCCchhHHHHHHHHHh
Q psy7164 549 RYGRLMIMTDQDQDGSHIKGLIINFIHHN 577 (2307)
Q Consensus 549 RYgkIiImTDaDvDG~HI~~LLltff~r~ 577 (2307)
.+..|||+||.|-=|..|+..|..+|..+
T Consensus 64 ~~r~VIILTD~D~~GekIr~~l~~~l~~~ 92 (132)
T PRK04017 64 RGKEVIILTDFDRKGEELAKKLSEYLQGY 92 (132)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhC
Confidence 46789999999999999999999988654
No 232
>KOG1924|consensus
Probab=24.73 E-value=96 Score=42.70 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=29.0
Q ss_pred HHHHcCCCCCCcHHHHHHhCCCcEEecCChhHHHHHHHHHHHHH
Q psy7164 1677 NTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLI 1720 (2307)
Q Consensus 1677 ~AR~~GVk~GM~l~~A~kLCPdL~ivpydfe~Yr~~S~~~y~iL 1720 (2307)
.||+.-=|.--.+-+|.++|-.|.+|.. ...|+++..++-.+.
T Consensus 239 la~aldpr~pnmm~dvvkllsalciV~e-e~~~ekvl~aiT~~a 281 (1102)
T KOG1924|consen 239 LARALDPREPNMMTDVVKLLSALCIVGE-ENGLEKVLEAITTIA 281 (1102)
T ss_pred HHHhcCccCccHHHHHHHHHHHHheeeh-hhHHHHHHHHHHHHH
Confidence 4666655555567788899988888876 566666666554443
No 233
>cd01700 PolY_Pol_V_umuC umuC subunit of DNA Polymerase V. umuC subunit of Pol V. Pol V is a bacterial translesion synthesis (TLS) polymerase that consists of the heterotrimer of one umuC and two umuD subunits. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Pol V, RecA, single stranded DNA-binding protein, beta sliding clamp, and gamma clamp loading complex are responsible for inducing the SOS response in bacteria to repair UV-induced DNA damage.
Probab=24.71 E-value=1.9e+02 Score=36.92 Aligned_cols=80 Identities=11% Similarity=0.179 Sum_probs=52.6
Q ss_pred CcCChhHHHHHHHHHHhh----hcCCCCCceEEeeee--ccccc--c----ccCCccCcchHHHHHHHHHHHHHhcCCCC
Q psy7164 2122 PIYERPLIITYFLLLVRS----AEAPREASKFLGHGV--CDYIT--K----SSSLPMYISQASQILKEVLFIVNKLKVDP 2189 (2307)
Q Consensus 2122 pt~~~~~L~~aA~~lL~~----i~~~~~~yr~~Gv~l--~dl~s--k----q~~L~l~t~~~~~I~~e~~~L~r~~g~~~ 2189 (2307)
++.+...+...++.+++. +...+...+.+.+.+ .++.. . ...++.++++.+.|...+..+|+++..+.
T Consensus 253 ~~~~~~~l~~~l~~L~~~l~~~L~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~ll~~~~~~~ 332 (344)
T cd01700 253 DVTDLDELKQALAEYAERAAEKLRRQKSVARTISVFIGTSGFSRQPKYYSATNTLPYPTNDTREIVKAALRLLYAIYRPG 332 (344)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHcCCcccEEEEEEEcCCCCCCCCccccccccCCcchhHHHHHHHHHHHHHHHhCCC
Confidence 444556666666665554 444555555555554 22221 1 23556788999999999999999886555
Q ss_pred ccEEEeeeeccC
Q psy7164 2190 VELRGIGIQVSK 2201 (2307)
Q Consensus 2190 ~~lRgIGIq~sk 2201 (2307)
..+|+|||.+++
T Consensus 333 ~~iR~iGV~~~~ 344 (344)
T cd01700 333 YAYRKAGVMLSD 344 (344)
T ss_pred CcEEEEEEEeeC
Confidence 679999998863
No 234
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=24.62 E-value=58 Score=45.08 Aligned_cols=50 Identities=18% Similarity=0.301 Sum_probs=41.4
Q ss_pred CCCCCCCCChhHHHHH-HhcCCccchhhhcCCHHHHHhh--hCcchHHHHHHHhc
Q psy7164 1980 PLSDLPGVGHSLLFKL-NSLGAQTCGDLQNISLKRLQNE--VGNKNGLTLYKHCR 2031 (2307)
Q Consensus 1980 PV~dLpGIG~~~~~kL-~~lGI~TigDL~~lp~~~L~~~--fG~k~G~~L~~~ar 2031 (2307)
.+..+||||++..++| +.+| ++.+++..+.+.|.+. +|.+.+..+++.++
T Consensus 638 ~L~~IPGIGpkr~k~LL~~FG--Sle~I~~AS~eELa~V~Gig~k~Ae~I~~~L~ 690 (694)
T PRK14666 638 ELQRVEGIGPATARLLWERFG--SLQAMAAAGEEGLAAVPGIGPARAAALHEHLK 690 (694)
T ss_pred HHhhCCCCCHHHHHHHHHHhC--CHHHHHhcCHHHHHhcCCcCHHHHHHHHHHHH
Confidence 4677999999999988 5567 9999999999999887 77788888877653
No 235
>COG0188 GyrA Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair]
Probab=24.49 E-value=4e+02 Score=38.09 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=77.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHh-------hhhHHHhhcc--cCCCchHHHHHHHhhccccccccccCCCCCCChhhHH
Q psy7164 783 SHPRPIAPKSYKIDDDSEEEEIEE-------VFHDNELAKP--QKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYD 853 (2307)
Q Consensus 783 ~sl~eIL~eF~~~Rl~~y~rr~e~-------l~ni~~li~~--~~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~q~d 853 (2307)
..-.+++.....|+++-.++|.+- +.|++++|.+ .+.+...+...........+.|.+ ...+-+..
T Consensus 355 ~hr~~vi~rR~~~~L~Ka~~R~hileGl~~a~~~iDevI~iIr~s~~~~~a~~~L~~~f~lse~Qa~-----aIl~mrL~ 429 (804)
T COG0188 355 EHRLEVVTRRTEYELNKAEERLHILEGLLIALLNIDEVIEIIRESKDKPEAKEELMARFGLSEKQAE-----AILDLRLR 429 (804)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHcCCCchHHHHHHHHHcCCcHHHHH-----HHHhhhHH
Confidence 345678888999999998877554 6779999988 566657776666655544444311 11122334
Q ss_pred HHHcCccccccHHHHHHHHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHhC
Q psy7164 854 YLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDK 906 (2307)
Q Consensus 854 yIL~M~L~rLT~ee~~kL~~E~~el~~ei~~L~~~s~~~lw~~DL~el~k~l~ 906 (2307)
-|.++-...+ ..|.++|.+++.+++.-|..-+.. ..+.+++|.++.++|.
T Consensus 430 rLt~le~~~i-~~E~~~L~~~i~~l~~iL~s~~~~--~~~i~~eL~~~~~k~g 479 (804)
T COG0188 430 RLTGLEEEKI-EKELKELEKEIADLEKILASEERL--LDIIKKELLEIKKKFG 479 (804)
T ss_pred HhhcchHHHH-HHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHHHHHhC
Confidence 4444444443 356778888888888887776665 5667899999988775
No 236
>cd01028 TOPRIM_TopoIA TOPRIM_TopoIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IA family of DNA topoisomerases (TopoIA). This subgroup contains proteins similar to the Type I DNA topoisomerases: E. coli topisomerases I and III, eukaryotic topoisomerase III and, ATP-dependent reverse gyrase found in archaea and thermophilic bacteria. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA. These enzymes cleave one strand of the DNA duplex, covalently link to the 5' phosphoryl end of the DNA break and allow the other strand of the duplex to pass through the gap. Reverse gyrase is also able to insert positive supercoils in the presence of ATP and negative supercoils in the presence of AMPPNP. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general b
Probab=23.26 E-value=52 Score=36.66 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=23.0
Q ss_pred CCcEEecccCCCCCCchhHHHHHHHH
Q psy7164 550 YGRLMIMTDQDQDGSHIKGLIINFIH 575 (2307)
Q Consensus 550 YgkIiImTDaDvDG~HI~~LLltff~ 575 (2307)
...|||+||+|--|-+|.-.+++++-
T Consensus 91 ~d~iiiAtD~DrEGE~I~~~i~~~~~ 116 (142)
T cd01028 91 ADEIVLATDPDREGELIAWEILEVLK 116 (142)
T ss_pred CCEEEEcCCCCcchHHHHHHHHHHhC
Confidence 46899999999999999998888773
No 237
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=23.26 E-value=98 Score=41.06 Aligned_cols=48 Identities=21% Similarity=0.296 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHhhhhcccC-CCCCeEEEEEEccCC--eEEEEeCCCCcccc
Q psy7164 84 LYKIFDEILVNACDNKQRD-PKMNCIKITVNQETN--TISVWNNGKGIPVV 131 (2307)
Q Consensus 84 L~~i~~EILdNavDe~~r~-g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd 131 (2307)
+-.++-=+|+||+-+.... ..+..|.|.+..+++ .++|.|||.||.-.
T Consensus 351 p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~ 401 (456)
T COG2972 351 PKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNGPGIDEE 401 (456)
T ss_pred chHHHhHHHHHHHHHhcccCCCCCEEEEEEEEcCCEEEEEEeeCCCCCChh
Confidence 3456777888888875422 234577777766545 67899999999853
No 238
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=22.75 E-value=79 Score=43.62 Aligned_cols=50 Identities=28% Similarity=0.478 Sum_probs=42.5
Q ss_pred CCCCCCCCCChhHHHHH-HhcCCccchhhhcCCHHHHHhhhCcchHHHHHHHh
Q psy7164 1979 IPLSDLPGVGHSLLFKL-NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHC 2030 (2307)
Q Consensus 1979 LPV~dLpGIG~~~~~kL-~~lGI~TigDL~~lp~~~L~~~fG~k~G~~L~~~a 2030 (2307)
..+..++|||++++..| ..+| ++.+|...+.+.|.+.+|++++..++.++
T Consensus 569 s~L~~I~GIG~k~a~~Ll~~Fg--s~~~i~~As~eeL~~vig~k~A~~I~~~~ 619 (621)
T PRK14671 569 TELTDIAGIGEKTAEKLLEHFG--SVEKVAKASLEELAAVAGPKTAETIYRYY 619 (621)
T ss_pred hhhhcCCCcCHHHHHHHHHHcC--CHHHHHhCCHHHHHHHhCHHHHHHHHHHh
Confidence 35678999999999988 4555 77899999999998889999999998775
No 239
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=22.44 E-value=88 Score=43.17 Aligned_cols=54 Identities=22% Similarity=0.390 Sum_probs=46.0
Q ss_pred cCCCCCCCCCChhHHHHH-HhcCCccchhhhcCCHHHHHhhhCcchHHHHHHHhcCC
Q psy7164 1978 NIPLSDLPGVGHSLLFKL-NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGE 2033 (2307)
Q Consensus 1978 ~LPV~dLpGIG~~~~~kL-~~lGI~TigDL~~lp~~~L~~~fG~k~G~~L~~~arGi 2033 (2307)
.-.+.++||||++...+| ..+| ++.++...+.++|.+.+|.+.+..++..++..
T Consensus 551 ~S~L~~IpGIG~kr~~~LL~~Fg--Si~~I~~As~eeL~~vi~~k~A~~I~~~l~~~ 605 (624)
T PRK14669 551 TSELLEIPGVGAKTVQRLLKHFG--SLERVRAATETQLAAVVGRAAAEAIIAHFTTE 605 (624)
T ss_pred HHHHhcCCCCCHHHHHHHHHHcC--CHHHHHhCCHHHHHHHhCHHHHHHHHHHhcCc
Confidence 346789999999999988 4554 88899999999999999999999999998743
No 240
>PF12092 DUF3568: Protein of unknown function (DUF3568); InterPro: IPR021952 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 130 amino acids in length.
Probab=22.12 E-value=2e+02 Score=32.21 Aligned_cols=53 Identities=19% Similarity=0.282 Sum_probs=36.5
Q ss_pred eeecCCCceeec--------ccCCCCCCCHHHHHHHHHHHHcCCCCCCCcc-cCCCCCcEEEE
Q psy7164 672 VLVNGAEGIGTG--------WMTKIPNHNPREIVDNIKRMIRGEDPLPMKP-WYKNFKGEIDY 725 (2307)
Q Consensus 672 LLVNGasGIAvG--------mATnIPPHN~~EVIdal~~lL~~~~~~~l~P-~ykGf~G~I~~ 725 (2307)
.|+.|+.++|.| +.+++ ||++.+|-+|+.+-|+.-+...... -+..-++.|..
T Consensus 23 al~~G~aa~g~g~~~Yv~G~~~~~~-~~s~~~v~~Atl~ai~~~~~~~~~~~~~~~~~A~I~g 84 (131)
T PF12092_consen 23 ALVAGGAAAGGGTVAYVNGEYSANY-PYSLDKVYNATLAAIQEMNLYTITSKKYNNSSAEIEG 84 (131)
T ss_pred hhhcccccccCceEEEEeeEEEEEc-CCCHHHHHHHHHHHHHhCCceeeecccccCceEEEEe
Confidence 366777777777 78888 9999999999999988755422221 12224566664
No 241
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=21.80 E-value=49 Score=45.33 Aligned_cols=33 Identities=39% Similarity=0.555 Sum_probs=29.4
Q ss_pred CCCCCCCCCChhHHHHHHhcCCccchhhhc-CCH
Q psy7164 1979 IPLSDLPGVGHSLLFKLNSLGAQTCGDLQN-ISL 2011 (2307)
Q Consensus 1979 LPV~dLpGIG~~~~~kL~~lGI~TigDL~~-lp~ 2011 (2307)
.|+..|.|||.+++++|+.+||+|+.||.- +|.
T Consensus 10 ~~l~~l~gig~~~a~~l~~Lgi~tv~DLL~~~P~ 43 (677)
T COG1200 10 VPLSTLKGIGPKTAEKLKKLGIHTVQDLLLYLPR 43 (677)
T ss_pred cchhhhcCcCHHHHHHHHHcCCCcHHHHHHhCcc
Confidence 379999999999999999999999999874 444
No 242
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=21.02 E-value=2.1e+02 Score=40.87 Aligned_cols=109 Identities=14% Similarity=0.060 Sum_probs=60.4
Q ss_pred HHHHHHHHHH----HHHHHHh-------hhhHHHhhcc--cCCCchHHHHHHHhhccccccccccCCCCCCChhhHHHHH
Q psy7164 790 PKSYKIDDDS----EEEEIEE-------VFHDNELAKP--QKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLL 856 (2307)
Q Consensus 790 ~eF~~~Rl~~----y~rr~e~-------l~ni~~li~~--~~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~q~dyIL 856 (2307)
.+++.-|.++ +++|++. +.+++++|++ ...+...+...........+.+ .....+-....|-
T Consensus 351 ~~~~~~r~~~~l~~~~~~~~~~~g~~~~~~~~d~vi~~ir~~~~~~~~~~~L~~~~~~~~~q-----a~~il~m~L~~Lt 425 (800)
T TIGR01063 351 KDVITRRTIFELRKAEERAHILEGLLIALDNIDEVIALIRASQNTEEAKTRLVERFSLSEIQ-----AQAILDMRLQRLT 425 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHhcCCCHHH-----HHHHHHhHHHHHh
Confidence 4444444444 4455443 4457788876 3444444444444432232222 1112222344444
Q ss_pred cCccccccHHHHHHHHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHhC
Q psy7164 857 GMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDK 906 (2307)
Q Consensus 857 ~M~L~rLT~ee~~kL~~E~~el~~ei~~L~~~s~~~lw~~DL~el~k~l~ 906 (2307)
.+-...| ..|.++|++|+++++.-++.-... ..+.+++|++++++|.
T Consensus 426 ~~e~~kl-~~e~~~l~~ei~~l~~iL~~~~~l--~~vi~~EL~eikkkfg 472 (800)
T TIGR01063 426 GLEREKL-QEEYKELLELIADLEDILASEERV--LEIIREELEEIKEQFG 472 (800)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHcCHHHH--HHHHHHHHHHHHHHhC
Confidence 4445555 567888888888888777666544 3445789999988886
No 243
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=20.92 E-value=1.3e+02 Score=40.10 Aligned_cols=45 Identities=20% Similarity=0.347 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhhhcccCCCCCeEEEEEEccCCeEEEEeCCCCcccccc
Q psy7164 86 KIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEH 133 (2307)
Q Consensus 86 ~i~~EILdNavDe~~r~g~~~~I~V~i~~d~gsIsV~DnGrGIPvd~~ 133 (2307)
.++.|+|.||+=+..=.-....|.|.+..| .|.|++.| |.|.++-
T Consensus 273 ~alREai~NAv~HRDYs~~~~~v~I~iydD--RieI~NPG-gl~~gi~ 317 (467)
T COG2865 273 EALREAIINAVIHRDYSIRGRNVHIEIYDD--RIEITNPG-GLPPGIT 317 (467)
T ss_pred HHHHHHHHHHHHhhccccCCCceEEEEECC--eEEEECCC-CCCCCCC
Confidence 589999999997632111223788888864 89999988 5666543
No 244
>PRK14973 DNA topoisomerase I; Provisional
Probab=20.51 E-value=1.3e+02 Score=43.63 Aligned_cols=52 Identities=27% Similarity=0.294 Sum_probs=43.0
Q ss_pred CCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhC--cchHHHHHHHhcC
Q psy7164 1981 LSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVG--NKNGLTLYKHCRG 2032 (2307)
Q Consensus 1981 V~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG--~k~G~~L~~~arG 2032 (2307)
+..++|+|..+.++|...||.++.||.+.+++.|.+.=| .+....+..++++
T Consensus 879 l~~vkg~ge~t~~~l~~ag~~~~e~l~~~d~~~la~~~~i~~k~~~~~~~~~~~ 932 (936)
T PRK14973 879 LLSVPGLGETTLEKLYLAGVYDGDLLVSADPKKLAKVTGIDEKKLRNLQAYAKK 932 (936)
T ss_pred hhhccCCCHHHHHHHHHcCCCCHHHhccCCHHHHhhhcCCCHHHHHHHHHHHhh
Confidence 667899999999999999999999999999999988655 3556666665554
No 245
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=20.43 E-value=60 Score=41.30 Aligned_cols=35 Identities=29% Similarity=0.324 Sum_probs=31.3
Q ss_pred CCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHH
Q psy7164 1981 LSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQ 2015 (2307)
Q Consensus 1981 V~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~ 2015 (2307)
+..+-|||+.++++|+.+||.+..|++.++.+.+.
T Consensus 265 L~~I~GiGp~~e~~L~~~Gi~~f~QiA~~t~~~~a 299 (326)
T PRK12311 265 LKKLTGVSPQIEKKLNDLGIFHFWQLAELDPDDAA 299 (326)
T ss_pred hhhhccCChhhhhhhhhcCCCCHHHhhCCChhhhh
Confidence 56788999999999999999999999999877554
No 246
>TIGR01954 nusA_Cterm_rpt transcription termination factor NusA, C-terminal duplication. NusA is a bacterial transcription termination factor. It is named for its interaction with phage lambda protein N, as part of the N utilization substance. Some members of the NusA family have a long C-terminal extension. This model represents an acidic 50-residue region found in two copies toward the C-terminus of most Proteobacterial NusA proteins, spaced about 26 residues apart. Analogous C-terminal extensions in some other bacterial lineages lack apparent homology but appear similarly acidic.
Probab=20.40 E-value=97 Score=28.02 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=29.1
Q ss_pred CChhHHHHHHhcCCccchhhhcCCHHHHHhhhC
Q psy7164 1987 VGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVG 2019 (2307)
Q Consensus 1987 IG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG 2019 (2307)
|+..+..+|...|+.|+.+|+.++...|...-|
T Consensus 1 i~~~~~~~L~~~G~~s~e~la~~~~~eL~~i~g 33 (50)
T TIGR01954 1 IDEEIAQLLVEEGFTTVEDLAYVPIDELLSIEG 33 (50)
T ss_pred CCHHHHHHHHHcCCCCHHHHHccCHHHHhcCCC
Confidence 356788999999999999999999999988765
No 247
>TIGR02027 rpoA DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type. This family consists of the bacterial (and chloroplast) DNA-directed RNA polymerase alpha subunit, encoded by the rpoA gene. The RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. The amino terminal domain is involved in dimerizing and assembling the other RNA polymerase subunits into a transcriptionally active enzyme. The carboxy-terminal domain contains determinants for interaction with DNA and with transcriptional activator proteins.
Probab=20.24 E-value=72 Score=40.14 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=43.9
Q ss_pred hhcCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHh--hhCcchHHHHHHHhc
Q psy7164 1976 MLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQN--EVGNKNGLTLYKHCR 2031 (2307)
Q Consensus 1976 L~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~--~fG~k~G~~L~~~ar 2031 (2307)
+..++|.+| ++.-+...-|++.||+|++||...+.+.|.+ -||.+....+.+.+.
T Consensus 232 ~~~~~I~~L-~LSvR~~n~Lk~~~I~ti~dL~~~~~~~l~~~~n~G~ksl~ei~~~l~ 288 (297)
T TIGR02027 232 LLSIKIEEL-DLSVRSYNCLKRAGIHTLGELVSKSEEELLKIKNFGKKSLTEIKEKLA 288 (297)
T ss_pred hccccHHHh-CccHHHHhHHHHcCCcCHHHHHhCCHHHHhhCCCCChhhHHHHHHHHH
Confidence 455678888 5888999999999999999999999999854 578776666655443
Done!