Query psy7164
Match_columns 2307
No_of_seqs 835 out of 5127
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 19:51:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7164.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7164hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gfh_A DNA topoisomerase 2; to 100.0 2E-194 6E-199 1952.5 53.0 817 28-909 4-1170(1177)
2 3qx3_A DNA topoisomerase 2-bet 100.0 1E-114 3E-119 1099.0 26.9 455 455-909 36-777 (803)
3 3l4j_A DNA topoisomerase 2; to 100.0 8E-112 3E-116 1072.8 24.9 452 455-909 6-750 (757)
4 2xkj_E Topoisomerase IV; type 100.0 2E-100 7E-105 980.4 25.8 434 453-906 27-741 (767)
5 2xcs_B DNA gyrase subunit B, D 100.0 3.8E-93 1.3E-97 904.0 20.8 435 456-906 8-682 (692)
6 1pvg_A DNA topoisomerase II; G 100.0 4E-89 1.4E-93 845.4 25.1 365 26-454 7-386 (418)
7 3gqc_A DNA repair protein REV1 100.0 1.1E-86 3.8E-91 841.9 38.9 457 1535-2208 11-501 (504)
8 1zxm_A TOPO IIA ATPase, DNA to 100.0 6.7E-86 2.3E-90 813.6 25.1 363 31-454 1-364 (400)
9 2aq4_A DNA repair protein REV1 100.0 8.7E-78 3E-82 755.4 38.3 407 1535-2204 3-433 (434)
10 3lnu_A Topoisomerase IV subuni 100.0 5.3E-76 1.8E-80 722.9 24.4 327 28-446 22-358 (408)
11 1ei1_A DNA gyrase B, GYRB; ATP 100.0 7E-71 2.4E-75 680.3 25.9 329 29-446 3-342 (391)
12 1s16_A Topoisomerase IV subuni 100.0 1.2E-68 4E-73 660.9 23.9 324 30-446 5-340 (390)
13 1jx4_A DNA polymerase IV (fami 100.0 3.7E-63 1.3E-67 608.1 31.7 347 1614-2167 1-350 (352)
14 1kij_A DNA gyrase subunit B; t 100.0 6.3E-64 2.1E-68 619.8 21.4 324 34-445 6-340 (390)
15 3bq0_A POL IV, DBH, DNA polyme 100.0 2E-62 6.7E-67 602.2 32.5 346 1614-2167 1-352 (354)
16 4f4y_A POL IV, DNA polymerase 100.0 3E-62 1E-66 601.5 32.9 339 1615-2160 2-344 (362)
17 4dez_A POL IV 1, DNA polymeras 100.0 2.6E-63 8.8E-68 610.4 23.4 344 1613-2205 2-346 (356)
18 3pzp_A DNA polymerase kappa; D 100.0 1.3E-61 4.3E-66 618.0 36.6 397 1612-2159 88-507 (517)
19 3osn_A DNA polymerase IOTA; ho 100.0 1.5E-61 5.1E-66 604.8 32.9 390 1610-2206 24-417 (420)
20 4ecq_A DNA polymerase ETA; tra 100.0 1.3E-60 4.3E-65 599.6 34.0 395 1611-2158 7-433 (435)
21 1t94_A Polymerase (DNA directe 100.0 3.9E-61 1.3E-65 608.6 29.5 392 1612-2159 32-451 (459)
22 3mfi_A DNA polymerase ETA; DNA 100.0 1.2E-60 4E-65 608.4 29.0 406 1609-2207 26-518 (520)
23 3cwv_A DNA gyrase, B subunit, 100.0 5.1E-61 1.7E-65 588.7 22.4 298 37-446 7-326 (369)
24 3k9f_C DNA topoisomerase 4 sub 100.0 2.3E-59 7.9E-64 531.7 12.1 165 455-633 34-204 (268)
25 3m4i_A DNA gyrase subunit B; G 100.0 4E-58 1.4E-62 517.2 10.6 160 465-633 13-180 (242)
26 3nuh_B DNA gyrase subunit B; t 100.0 9.6E-54 3.3E-58 511.2 11.3 171 450-632 14-187 (420)
27 4duh_A DNA gyrase subunit B; s 100.0 9.6E-51 3.3E-55 465.6 11.1 205 30-290 5-210 (220)
28 4emv_A DNA topoisomerase IV, B 100.0 1.8E-50 6E-55 464.5 9.3 205 29-290 10-216 (226)
29 2inr_A DNA topoisomerase 4 sub 100.0 1.5E-49 5E-54 493.5 15.2 249 657-907 171-500 (514)
30 1im4_A DBH; DNA polymerase PAL 100.0 6.4E-49 2.2E-53 452.7 19.3 214 1613-2016 5-221 (221)
31 2nov_A DNA topoisomerase 4 sub 100.0 1.6E-49 5.6E-54 492.2 14.3 249 657-907 147-476 (496)
32 3ilw_A DNA gyrase subunit A; D 100.0 7.5E-49 2.6E-53 482.0 9.7 248 657-906 128-461 (470)
33 3lpx_A GYRA, DNA gyrase, A sub 100.0 9.3E-48 3.2E-52 470.6 18.7 250 657-906 121-484 (500)
34 1zvu_A Topoisomerase IV subuni 100.0 4.9E-47 1.7E-51 484.0 12.4 242 657-905 123-446 (716)
35 3fv5_A DNA topoisomerase 4 sub 100.0 6.5E-42 2.2E-46 388.8 10.8 192 41-290 1-193 (201)
36 3ttz_A DNA gyrase subunit B; p 100.0 4.1E-41 1.4E-45 380.9 10.7 178 34-290 5-183 (198)
37 2q2e_B Type 2 DNA topoisomeras 99.9 8.2E-29 2.8E-33 319.7 -4.6 289 34-436 11-315 (621)
38 2ebw_A DNA repair protein REV1 99.7 1.6E-17 5.3E-22 167.7 8.0 90 1340-1441 7-97 (97)
39 4id3_A DNA repair protein REV1 99.7 4.4E-17 1.5E-21 162.3 8.3 87 1341-1439 3-91 (92)
40 2zbk_B Type 2 DNA topoisomeras 99.6 6.1E-18 2.1E-22 216.4 -8.1 291 31-436 2-312 (530)
41 3pc6_A DNA repair protein XRCC 99.5 8.7E-15 3E-19 149.6 6.7 90 1342-1441 4-96 (104)
42 1b63_A MUTL; DNA mismatch repa 99.5 5.1E-14 1.8E-18 171.8 13.7 221 81-348 22-267 (333)
43 3na3_A DNA mismatch repair pro 99.5 2.1E-14 7.1E-19 175.1 8.5 183 35-288 8-198 (348)
44 1wf6_A Similar to S.pombe -RAD 99.4 8.5E-14 2.9E-18 148.6 7.7 90 1341-1441 36-128 (132)
45 3h4l_A DNA mismatch repair pro 99.4 6.5E-14 2.2E-18 172.1 6.7 160 82-287 24-194 (367)
46 2d8m_A DNA-repair protein XRCC 99.4 1.4E-13 4.8E-18 146.4 7.2 89 1343-1442 20-109 (129)
47 3l3e_A DNA topoisomerase 2-bin 99.4 1.5E-13 5E-18 141.4 5.7 89 1341-1440 11-103 (107)
48 2cou_A ECT2 protein; BRCT doma 99.4 9.4E-14 3.2E-18 143.6 3.8 89 1342-1441 9-98 (109)
49 3ii6_X DNA ligase 4; XRCC4, NH 99.4 2.7E-13 9.3E-18 160.4 7.8 92 1341-1443 6-99 (263)
50 3l46_A Protein ECT2; alternati 99.4 2.5E-13 8.6E-18 140.8 4.9 88 1342-1440 18-106 (112)
51 2ep8_A Pescadillo homolog 1; A 99.3 1.7E-12 5.8E-17 132.2 7.7 82 1341-1438 8-100 (100)
52 1h7s_A PMS1 protein homolog 2; 99.3 1.8E-12 6.2E-17 159.8 7.4 194 35-303 14-231 (365)
53 3pa6_A Microcephalin; BRCT dom 99.3 3.3E-12 1.1E-16 131.6 7.0 93 1343-1442 5-98 (107)
54 1mu5_A Type II DNA topoisomera 99.2 7.3E-12 2.5E-16 159.0 8.0 191 32-288 4-209 (471)
55 1z56_C DNA ligase IV; DNA repa 99.1 5.9E-12 2E-16 148.8 1.0 96 1342-1442 2-103 (264)
56 3gqc_A DNA repair protein REV1 99.1 4.8E-12 1.6E-16 161.4 -0.5 65 1183-1289 5-69 (504)
57 3olc_X DNA topoisomerase 2-bin 99.1 2.3E-11 7.8E-16 146.4 4.7 91 1342-1443 196-288 (298)
58 3ii6_X DNA ligase 4; XRCC4, NH 99.1 1.2E-10 4.1E-15 137.8 9.0 97 1341-1439 160-263 (263)
59 3pc7_A DNA ligase 3; DNA repai 99.1 1.1E-10 3.8E-15 115.6 5.7 76 1340-1434 11-87 (88)
60 3ef0_A RNA polymerase II subun 99.0 3.1E-10 1.1E-14 140.0 5.8 91 1343-1440 280-372 (372)
61 3ef1_A RNA polymerase II subun 98.9 3.5E-10 1.2E-14 141.2 4.1 90 1344-1440 351-442 (442)
62 3ku8_A GYRA14, DNA gyrase subu 98.8 2.1E-09 7.2E-14 116.6 6.4 96 793-888 14-150 (156)
63 3u3z_A Microcephalin; DNA repa 98.8 3.1E-09 1E-13 121.0 4.6 83 1341-1440 115-198 (199)
64 2jw5_A DNA polymerase lambda; 98.8 1.8E-09 6E-14 111.2 2.3 90 1341-1440 7-104 (106)
65 2coe_A Deoxynucleotidyltransfe 98.7 1E-08 3.5E-13 107.2 7.1 91 1341-1441 16-115 (120)
66 1kzy_C Tumor suppressor P53-bi 98.7 1.7E-08 5.7E-13 119.4 7.3 102 1341-1442 11-138 (259)
67 2vxb_A DNA repair protein RHP9 98.6 2.3E-08 7.8E-13 117.0 6.9 92 1344-1443 1-120 (241)
68 1z56_C DNA ligase IV; DNA repa 98.6 6.2E-09 2.1E-13 123.0 2.0 90 1341-1440 156-262 (264)
69 1l0b_A BRCA1; TANDEM-BRCT, thr 98.5 4.9E-08 1.7E-12 112.7 6.1 87 1344-1441 3-96 (229)
70 1t15_A Breast cancer type 1 su 98.5 5E-08 1.7E-12 111.2 5.3 84 1347-1441 3-93 (214)
71 1unn_C POL IV, DNA polymerase 98.5 2.5E-07 8.5E-12 96.3 10.0 99 2045-2160 5-106 (115)
72 1t15_A Breast cancer type 1 su 98.5 1.1E-07 3.7E-12 108.5 6.7 89 1342-1440 112-211 (214)
73 2nte_A BARD-1, BRCA1-associate 98.5 8.5E-08 2.9E-12 109.6 5.1 83 1348-1441 2-88 (210)
74 1l0b_A BRCA1; TANDEM-BRCT, thr 98.4 1.8E-07 6.1E-12 108.0 6.5 88 1344-1441 116-214 (229)
75 3sqd_A PAX-interacting protein 98.3 2.2E-07 7.5E-12 107.3 4.7 85 1345-1441 13-99 (219)
76 3al2_A DNA topoisomerase 2-bin 98.3 4.3E-07 1.5E-11 105.9 6.1 85 1346-1441 7-95 (235)
77 3olc_X DNA topoisomerase 2-bin 98.3 2.7E-07 9.4E-12 111.1 4.1 84 1343-1437 103-187 (298)
78 2dun_A POL MU, DNA polymerase 98.2 5.9E-07 2E-11 94.7 5.1 89 1341-1439 6-106 (133)
79 2etx_A Mediator of DNA damage 98.2 7.2E-07 2.4E-11 102.2 5.7 85 1342-1441 6-92 (209)
80 3u3z_A Microcephalin; DNA repa 98.2 1E-06 3.6E-11 100.2 6.0 83 1349-1442 12-97 (199)
81 2nte_A BARD-1, BRCA1-associate 98.1 1.5E-06 5.2E-11 99.3 5.6 84 1342-1436 101-210 (210)
82 2etx_A Mediator of DNA damage 98.0 2.9E-06 1E-10 97.1 5.4 87 1344-1442 114-204 (209)
83 2wer_A ATP-dependent molecular 97.9 2E-05 6.7E-10 91.1 9.2 169 85-289 28-211 (220)
84 2cok_A Poly [ADP-ribose] polym 97.8 1.3E-05 4.4E-10 83.4 5.2 83 1343-1436 8-104 (113)
85 2aq4_A DNA repair protein REV1 97.8 4.5E-06 1.5E-10 105.6 1.6 33 1188-1220 2-34 (434)
86 1l7b_A DNA ligase; BRCT, autos 97.8 1.4E-05 4.9E-10 80.2 4.8 74 1343-1427 5-79 (92)
87 3l41_A BRCT-containing protein 97.7 1E-05 3.6E-10 93.4 3.0 81 1346-1441 6-88 (220)
88 2ior_A Chaperone protein HTPG; 97.7 3.9E-05 1.3E-09 89.5 7.2 129 85-248 49-199 (235)
89 3t0h_A Heat shock protein HSP 97.7 3.3E-05 1.1E-09 89.7 6.3 131 85-248 34-181 (228)
90 3o0i_A HSP90AA1 protein; HSP90 97.6 7.8E-05 2.7E-09 87.6 8.4 131 85-248 62-209 (256)
91 2gqp_A Endoplasmin; GRP94, HSP 97.6 0.00011 3.7E-09 85.8 8.9 135 85-249 34-187 (236)
92 1kzy_C Tumor suppressor P53-bi 97.5 7E-05 2.4E-09 88.6 6.8 85 1342-1437 152-249 (259)
93 2k6g_A Replication factor C su 97.5 0.00011 3.8E-09 76.0 7.1 77 1343-1429 30-108 (109)
94 3sqd_A PAX-interacting protein 97.5 8.8E-05 3E-09 85.7 6.6 85 1343-1439 120-218 (219)
95 1yc1_A HSP 86, heat shock prot 97.5 0.00013 4.6E-09 86.4 8.1 167 86-289 71-252 (264)
96 3peh_A Endoplasmin homolog; st 97.4 0.0002 6.8E-09 85.0 8.5 137 86-250 49-199 (281)
97 3nmq_A Heat shock protein HSP 97.4 0.00019 6.5E-09 83.6 7.7 136 86-250 42-190 (239)
98 1y4s_A Chaperone protein HTPG; 97.4 0.00052 1.8E-08 88.8 12.0 133 86-249 30-180 (559)
99 2ebu_A Replication factor C su 97.4 0.00016 5.5E-09 75.1 5.6 75 1344-1428 21-97 (112)
100 2l42_A DNA-binding protein RAP 97.3 0.00015 5.1E-09 72.2 4.3 86 1343-1441 9-96 (106)
101 2cg9_A ATP-dependent molecular 97.2 0.00077 2.6E-08 88.6 11.6 134 86-248 29-176 (677)
102 1qy5_A Endoplasmin; GRP94, NEC 97.2 0.0002 6.8E-09 85.0 4.9 128 86-248 31-182 (269)
103 2ioq_A Chaperone protein HTPG; 97.1 0.00053 1.8E-08 89.8 7.5 133 86-249 30-180 (624)
104 3ied_A Heat shock protein; HSP 96.9 0.001 3.5E-08 77.8 7.1 115 107-250 120-240 (272)
105 1th8_A Anti-sigma F factor; SP 96.9 0.00095 3.3E-08 70.8 6.3 48 82-129 38-87 (145)
106 2o1u_A Endoplasmin; GRP94, HSP 96.8 0.0011 3.9E-08 87.0 7.0 133 86-248 48-199 (666)
107 1bxd_A ENVZ(290-450), protein 96.6 0.0034 1.1E-07 67.5 7.6 46 83-133 47-94 (161)
108 1id0_A PHOQ histidine kinase; 96.5 0.0027 9.1E-08 67.3 6.6 46 82-132 43-90 (152)
109 2vxb_A DNA repair protein RHP9 96.5 0.0017 5.8E-08 76.0 5.0 87 1342-1433 148-240 (241)
110 3a0y_A Sensor protein; ATP-LID 96.4 0.0061 2.1E-07 64.3 8.3 48 82-132 46-95 (152)
111 3jz3_A Sensor protein QSEC; he 96.4 0.002 6.9E-08 72.1 4.9 46 83-133 117-162 (222)
112 3al2_A DNA topoisomerase 2-bin 96.2 0.002 6.8E-08 75.2 3.5 87 1343-1441 133-230 (235)
113 2c2a_A Sensor histidine kinase 96.2 0.0045 1.5E-07 71.7 6.3 52 82-133 137-190 (258)
114 3l41_A BRCT-containing protein 96.1 0.0027 9.4E-08 73.3 4.1 84 1343-1438 111-212 (220)
115 3sl2_A Sensor histidine kinase 96.1 0.0045 1.5E-07 67.7 5.2 47 83-132 43-93 (177)
116 1gkz_A [3-methyl-2-oxobutanoat 95.9 0.0053 1.8E-07 76.2 5.1 52 82-133 237-295 (388)
117 1r62_A Nitrogen regulation pro 95.8 0.0062 2.1E-07 64.7 4.8 48 83-132 48-107 (160)
118 1ysr_A Sensor-type histidine k 95.8 0.0074 2.5E-07 63.9 5.3 48 82-133 45-94 (150)
119 4ew8_A Sensor protein DIVL; si 95.6 0.02 7E-07 66.2 8.2 48 83-133 155-204 (268)
120 2e0a_A Pyruvate dehydrogenase 95.5 0.0066 2.3E-07 75.6 4.2 51 83-133 230-286 (394)
121 2btz_A Pyruvate dehydrogenase 95.2 0.0085 2.9E-07 74.5 3.7 109 83-224 231-349 (394)
122 2q8g_A [pyruvate dehydrogenase 95.2 0.0093 3.2E-07 74.5 4.1 51 83-133 243-299 (407)
123 3d36_A Sporulation kinase B; G 95.2 0.0088 3E-07 67.9 3.5 48 82-132 122-171 (244)
124 3a0r_A Sensor protein; four he 95.1 0.022 7.7E-07 68.2 6.9 48 83-133 244-293 (349)
125 1y8o_A [pyruvate dehydrogenase 95.0 0.0086 2.9E-07 75.2 3.0 51 83-133 253-310 (419)
126 1b3q_A Protein (chemotaxis pro 94.7 0.019 6.6E-07 71.2 5.0 50 83-132 106-166 (379)
127 3ehg_A Sensor kinase (YOCF pro 94.1 0.054 1.9E-06 56.2 6.0 48 82-133 39-88 (128)
128 1i58_A Chemotaxis protein CHEA 93.4 0.085 2.9E-06 58.1 6.2 50 83-132 47-107 (189)
129 1wcn_A Transcription elongatio 93.0 0.042 1.4E-06 52.6 2.5 51 1981-2031 9-61 (70)
130 3ke6_A Protein RV1364C/MT1410; 92.8 0.18 6.2E-06 63.0 8.8 86 82-223 296-384 (399)
131 3ehh_A Sensor kinase (YOCF pro 92.6 0.098 3.3E-06 58.6 5.3 46 83-132 130-177 (218)
132 1dgs_A DNA ligase; AMP complex 92.6 0.022 7.5E-07 75.1 0.0 76 1343-1429 585-661 (667)
133 4fpp_A Phosphotransferase; fou 92.0 0.08 2.7E-06 61.5 3.7 47 83-132 146-194 (247)
134 3zxo_A Redox sensor histidine 91.8 0.22 7.6E-06 51.1 6.5 45 83-131 43-88 (129)
135 3zxq_A Hypoxia sensor histidin 91.7 0.18 6.1E-06 51.5 5.6 46 82-131 38-84 (124)
136 2owo_A DNA ligase; protein-DNA 91.1 0.04 1.4E-06 72.7 0.0 75 1343-1427 595-670 (671)
137 2a1j_A DNA repair endonuclease 89.1 0.35 1.2E-05 45.2 4.5 51 1981-2032 6-57 (63)
138 1z00_B DNA repair endonuclease 86.7 0.44 1.5E-05 47.1 3.8 51 1981-2032 20-71 (84)
139 3bqs_A Uncharacterized protein 86.2 0.27 9.3E-06 49.5 2.0 35 1980-2014 5-39 (93)
140 3mab_A Uncharacterized protein 85.4 0.4 1.4E-05 48.3 2.8 35 1980-2014 5-39 (93)
141 4fjo_A DNA repair protein REV1 85.4 0.76 2.6E-05 46.6 4.9 68 1813-1880 10-78 (97)
142 1unn_C POL IV, DNA polymerase 84.0 2.2 7.6E-05 44.0 7.8 52 2155-2209 57-110 (115)
143 1b22_A DNA repair protein RAD5 83.7 0.45 1.5E-05 49.7 2.3 56 1978-2033 22-81 (114)
144 3vu7_H DNA repair protein REV1 82.4 0.71 2.4E-05 48.8 3.3 77 1812-1888 36-113 (124)
145 1z3e_B DNA-directed RNA polyme 81.4 1.2 4.1E-05 43.0 4.2 55 1976-2031 6-62 (73)
146 3gfk_B DNA-directed RNA polyme 74.8 1.7 6E-05 42.5 3.2 54 1976-2030 13-68 (79)
147 1qw2_A Conserved hypothetical 74.6 1.4 4.8E-05 44.8 2.5 27 1669-1695 74-100 (102)
148 1vq8_Y 50S ribosomal protein L 71.8 0.8 2.7E-05 53.6 0.0 54 1979-2032 15-70 (241)
149 3t7k_A RTT107, regulator of TY 68.5 4.7 0.00016 47.2 5.4 83 1348-1441 22-120 (256)
150 3k4g_A DNA-directed RNA polyme 67.8 3.2 0.00011 41.3 3.3 54 1977-2031 10-65 (86)
151 2a1j_B DNA excision repair pro 67.0 4.8 0.00016 39.9 4.5 50 1981-2032 34-86 (91)
152 3qbz_A DDK kinase regulatory s 66.9 2.7 9.1E-05 45.9 2.7 52 1344-1401 57-116 (160)
153 1pzn_A RAD51, DNA repair and r 66.5 3.8 0.00013 50.3 4.4 55 1977-2031 33-89 (349)
154 4gns_A Chitin biosynthesis pro 64.8 4.7 0.00016 43.8 4.1 88 1346-1441 162-255 (290)
155 2kz3_A Putative uncharacterize 64.8 5.8 0.0002 39.2 4.4 44 1977-2020 2-45 (83)
156 1coo_A RNA polymerase alpha su 63.1 3.2 0.00011 42.2 2.3 53 1978-2031 23-77 (98)
157 2va8_A SSO2462, SKI2-type heli 63.1 2.5 8.4E-05 56.5 2.0 52 1979-2031 657-708 (715)
158 3huf_A DNA repair and telomere 62.3 4.1 0.00014 49.2 3.4 57 1372-1428 126-187 (325)
159 2i1q_A DNA repair and recombin 62.3 4.4 0.00015 48.7 3.8 54 1979-2032 3-58 (322)
160 1z00_A DNA excision repair pro 62.3 4.9 0.00017 39.6 3.5 50 1981-2032 21-73 (89)
161 1ci4_A Protein (barrier-TO-aut 61.5 3.7 0.00013 40.9 2.3 30 1978-2007 17-46 (89)
162 1kft_A UVRC, excinuclease ABC 61.1 4.1 0.00014 39.2 2.6 49 1980-2030 25-76 (78)
163 3oq0_A DBF4, protein DNA52; DD 60.1 9.5 0.00032 41.4 5.4 65 1344-1410 19-86 (151)
164 3im1_A Protein SNU246, PRE-mRN 58.9 6.7 0.00023 47.7 4.6 62 1978-2039 156-219 (328)
165 2p6r_A Afuhel308 helicase; pro 56.7 3.2 0.00011 55.4 1.4 52 1979-2031 632-683 (702)
166 1ixm_A SPO0B, protein (sporula 56.5 14 0.00046 41.8 6.2 48 84-132 110-161 (192)
167 4f4y_A POL IV, DNA polymerase 55.2 14 0.00047 45.7 6.5 89 2122-2211 255-350 (362)
168 2nrt_A Uvrabc system protein C 55.1 7.1 0.00024 45.1 3.6 50 1979-2030 168-219 (220)
169 3pzp_A DNA polymerase kappa; D 54.7 22 0.00077 45.9 8.6 75 2131-2205 426-508 (517)
170 2q0z_X Protein Pro2281; SEC63, 54.1 8.5 0.00029 47.0 4.4 58 1978-2035 160-219 (339)
171 3oq4_A DBF4, protein DNA52; DD 52.6 13 0.00044 39.7 4.8 35 1374-1409 34-68 (134)
172 2z43_A DNA repair and recombin 49.4 3.5 0.00012 49.8 0.0 54 1979-2032 12-67 (324)
173 2zj8_A DNA helicase, putative 48.5 9.3 0.00032 51.1 3.8 51 1978-2030 645-695 (720)
174 3bq0_A POL IV, DBH, DNA polyme 48.3 26 0.0009 42.9 7.5 89 2122-2211 255-350 (354)
175 3nuh_B DNA gyrase subunit B; t 47.5 21 0.00073 44.4 6.3 37 596-633 322-358 (420)
176 1jx4_A DNA polymerase IV (fami 45.5 21 0.00071 43.8 5.9 81 2122-2205 254-343 (352)
177 1x2i_A HEF helicase/nuclease; 43.1 12 0.0004 35.2 2.5 51 1981-2032 16-68 (75)
178 3ilw_A DNA gyrase subunit A; D 43.0 56 0.0019 41.6 9.2 88 788-884 342-441 (470)
179 2duy_A Competence protein come 41.2 15 0.00051 35.0 2.9 43 1981-2029 29-72 (75)
180 1jms_A Terminal deoxynucleotid 38.4 30 0.001 43.1 5.8 103 1982-2086 124-248 (381)
181 1gm5_A RECG; helicase, replica 37.6 15 0.00053 49.7 3.3 30 1979-2008 115-144 (780)
182 3lda_A DNA repair protein RAD5 36.3 15 0.00052 45.9 2.8 57 1975-2031 77-137 (400)
183 1zvu_A Topoisomerase IV subuni 35.3 97 0.0033 41.4 10.0 105 788-904 331-449 (716)
184 1u9l_A Transcription elongatio 32.1 31 0.0011 33.0 3.5 46 1985-2030 12-59 (70)
185 2fmp_A DNA polymerase beta; nu 32.0 15 0.00052 44.9 1.7 29 1981-2009 100-128 (335)
186 1t94_A Polymerase (DNA directe 31.2 24 0.00082 44.9 3.4 82 2124-2205 359-452 (459)
187 3c65_A Uvrabc system protein C 31.1 10 0.00035 44.0 0.0 53 1978-2031 172-225 (226)
188 1ixr_A Holliday junction DNA h 28.5 22 0.00076 40.2 2.1 54 1981-2034 74-131 (191)
189 2owo_A DNA ligase; protein-DNA 27.2 44 0.0015 44.5 4.9 48 1982-2029 449-499 (671)
190 1dgs_A DNA ligase; AMP complex 26.8 43 0.0015 44.6 4.7 48 1982-2029 444-494 (667)
191 1v5w_A DMC1, meiotic recombina 26.2 14 0.00048 45.0 0.0 52 1980-2031 26-81 (343)
192 2bcq_A DNA polymerase lambda; 25.4 28 0.00094 42.7 2.4 27 1982-2008 99-125 (335)
193 2bgw_A XPF endonuclease; hydro 23.1 34 0.0012 39.0 2.5 51 1981-2032 164-216 (219)
194 2ihm_A POL MU, DNA polymerase 22.8 34 0.0012 42.3 2.5 101 1982-2086 105-226 (360)
195 4glx_A DNA ligase; inhibitor, 22.7 64 0.0022 42.3 5.1 48 1983-2030 450-500 (586)
196 1t6f_A Geminin; coiled-coil, c 22.3 68 0.0023 26.8 3.2 30 866-901 7-36 (37)
197 2bcq_A DNA polymerase lambda; 21.9 41 0.0014 41.1 3.0 52 1981-2036 59-120 (335)
198 4f92_B U5 small nuclear ribonu 21.2 43 0.0015 49.4 3.4 59 1978-2036 1556-1616(1724)
No 1
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-194 Score=1952.50 Aligned_cols=817 Identities=49% Similarity=0.837 Sum_probs=704.1
Q ss_pred CCCChhhhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCe
Q psy7164 28 NKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNC 107 (2307)
Q Consensus 28 ~~~~~~~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~ 107 (2307)
++.+++++||+|++|||||+|||||||||++.+++|||||++.++|++++|+|+||||||||||||||+||+++++.|+.
T Consensus 4 ~~~~~~~~yq~L~~LE~VrkRPgMYIGst~~~~~~~~v~~~~~~~~~~~~vt~v~GL~hl~~EildNsiDea~ag~~~~~ 83 (1177)
T 4gfh_A 4 EPVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKR 83 (1177)
T ss_dssp ---CHHHHSEECCHHHHHHHCGGGTTCCCSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCE
T ss_pred CCCchhhcccccccchhhhcCCCCccccCCCCCcceeeeeccccccccccccccceeeeEeeEEEEChHhHHhhCCCCCe
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999998777999
Q ss_pred EEEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCccccc
Q psy7164 108 IKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVT 187 (2307)
Q Consensus 108 I~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~s 187 (2307)
|+|+|+.+||+|+|+||||||||++||++|+|+||+|||+|||| ||||+++|++|
T Consensus 84 I~V~i~~~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAG-------------------------gKFd~~~ykvS 138 (1177)
T 4gfh_A 84 IDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTS-------------------------SNYDDDEKKVT 138 (1177)
T ss_dssp EEEEEETTTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEE-------------------------SCCCCSSCCCC
T ss_pred EEEEEECCCCEEEEEecCCcccccccCCCCCEeeeeeccccccc-------------------------cCcCCCCCeEe
Confidence 99999987899999999999999999999999999999999999 99999999999
Q ss_pred cCCCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCC-CCCCCcEEEEEeCcccccccccCHHHHHH
Q psy7164 188 GGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSG-SKDDFTKITFTPDLTKFKMTSLDKDMVDL 266 (2307)
Q Consensus 188 gGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~-~~~~GT~VtF~PD~~iF~~~~f~~d~l~~ 266 (2307)
|||||||+|||||||++|.|+|++.++|+.|.|.|++|++....++++.+ .+.+||+|+|+||++||+++.|+++++..
T Consensus 139 GGLHGVG~svVNALS~~~~vev~~~r~Gk~y~q~f~~g~~~~~~~~i~~~~~~~tGT~V~F~PD~~iF~~~~~~~d~l~~ 218 (1177)
T 4gfh_A 139 GGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGV 218 (1177)
T ss_dssp SCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEECCSSCCCEEEEEEECHHHHTCSSCCHHHHHH
T ss_pred ccCCChhhhHHhhcCCceEEEEEEEcCCEEEEEEEECCcccCCCCeeecCCCCCCceEEEEEeCHHhcCCcEeCHHHHHH
Confidence 99999999999999999999998888999999999999998888887765 35799999999999999999999999998
Q ss_pred HHHHHHHhhccCCCcEEEeccccCCccchHHHHHHHhccCCCC------------CCCeEEEEEecCCeeEEEEeecCCC
Q psy7164 267 ITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDED------------GDPVKIIYENVNPRWEVAIAPSDRG 334 (2307)
Q Consensus 267 l~~Rl~dlA~LnpGLkI~lnder~~~~G~~dYV~~~~~~~~~~------------~~~~~ii~e~~~~~~EVAl~~s~~~ 334 (2307)
+.+|++.++...+++.+.++|++.....|++|+..|....+.. .+...+.++..+.+||||++|++.+
T Consensus 219 ~~r~~~~l~~~~~~~~~~~~g~~~~~~~f~~gi~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~eva~~~~d~~ 298 (1177)
T 4gfh_A 219 MRRRVYDINGSVRDINVYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVSDIS 298 (1177)
T ss_dssp HHHHHHHHHHHSSSCEEEESSCBCCCCSHHHHHGGGTTTC-----------------CCSCEEEEEETTEEEEEEECSSS
T ss_pred HHHHHHHhcCCCceEEEEecCCeeEEeeccchhhhhhhhhccceeccccccccccCCCceEEEEeccceEEEeecccCCc
Confidence 8888888887788999999999988777777777765322110 1112356677789999999999877
Q ss_pred ceEEEeeCCccCCCCcchhhHHHHHHHHHHHHHHHHhccccccceeeccccccccccchhhhhcccccccccccccccCC
Q psy7164 335 FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALK 414 (2307)
Q Consensus 335 y~~~SFVNnI~T~eGGTHvdgfr~aLtr~i~~~~kkk~k~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~dvreg~~~vk 414 (2307)
++++||||||+|++||||++||++||+++|++|++++++ ..++
T Consensus 299 ~~~~SFvN~I~T~~GGTHv~gfr~altr~in~~~~k~~~-------------------------------------~~~~ 341 (1177)
T 4gfh_A 299 FQQISFVNSIATTMGGTHVNYITDQIVKKISEILKKKKK-------------------------------------KSVK 341 (1177)
T ss_dssp CEEEEEESSCEETTEEHHHHHHHHHHHHHHHHHHHHHSS-------------------------------------SCCC
T ss_pred ceeeeeeeeeecCCCchHHHHHHHHHHHHHHHHhhhhcc-------------------------------------ccCC
Confidence 788999999999999999999999999999999876643 2467
Q ss_pred hHhHhcceEEEEEeecCCCcccchhhhhhhcccccccccc----------------------------------------
Q psy7164 415 PFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC---------------------------------------- 454 (2307)
Q Consensus 415 ~~dIre~L~~~Vsvki~nP~FegQTKekL~~~~~~~~~k~---------------------------------------- 454 (2307)
++|||+||++||||+|+||+|+||||++|++....+++.+
T Consensus 342 ~~DIregl~avISvki~~PqFegQTK~kL~s~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~~~~k~~~~~k~ 421 (1177)
T 4gfh_A 342 SFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIMKTDLATRMFEIADANEENALKKSDGTRKS 421 (1177)
T ss_dssp HHHHHTTEEEEEEECCSSCCBSSTTCCEECCCGGGSSSCCCCCHHHHHHHTTSHHHHHHHHHHTTCC------------C
T ss_pred HHHHhCCceEEEEeeeccCccccchhhhhcCchhcceeeccchHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcch
Confidence 8999999999999999999999999999987544433211
Q ss_pred ----ccccccccccCCCCCCCcEEEEEecCccchhcccCcccccccceeeccCCcccchhhccchHHHhhcHHHHHHHHH
Q psy7164 455 ----VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKI 530 (2307)
Q Consensus 455 ----lpKL~Dc~~a~tk~~~~ceLfIvEGDSA~~~a~sGsak~gRD~qaIlPLRGKiLNV~ka~~~ki~~N~EI~~Li~a 530 (2307)
+|||+||+.|+++++++|||||||||||||+|++|+|++|||+|||||||||||||+||+.+||++|+||++||+|
T Consensus 422 ~~~~~~KL~d~~~~~skd~~~~ELfiVEGDSAgGsAk~Grak~~Rd~QAIlPLRGKiLNv~ka~~~kil~N~EI~~ii~a 501 (1177)
T 4gfh_A 422 RITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKI 501 (1177)
T ss_dssp CCCSCTTCBCCTTTTTTTTTTCEEEEEEHHHHHHHHHHHHHHHCSTTEEEEEECSSCCCCTTCCHHHHHHCHHHHHHHHH
T ss_pred hhccccccccccccCCCCccceEEEEecCCchhhhHhhcccccCcccEEecccCceechhhhhHHHHHhhcHHHHHHHHH
Confidence 6799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCcCCcCCCCCCCCCcEEecccCCCCCCchhHHHHHHHHHhhhhhhc-CCcEEEecCcEEEEEeC---CeEEEE
Q psy7164 531 LGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR-LPFLEEFITPIIKATKA---REELSF 606 (2307)
Q Consensus 531 LGlg~~~~y~~~~d~~~LRYgkIiImTDaDvDG~HI~~LLltff~r~~p~Li~-~G~vy~~~tPL~kv~~g---k~~~~f 606 (2307)
||||+|++| +|+++||||||||||||||||+|||||||||||||||+||+ +||||+|+||||||+.| |+..||
T Consensus 502 lG~g~g~~~---~d~~~LRY~KIiIMTDADvDGsHIrtLLltfF~r~~p~Lie~~G~vyia~pPLykv~~~k~~k~~~~~ 578 (1177)
T 4gfh_A 502 MGLQHRKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAF 578 (1177)
T ss_dssp TTCCCSSCC---CCGGGSSCSEEEEECCSSHHHHHHHHHHHHHHHHHSTTSTTSTTCEEEECCCSEEEEECSSSCCEEEE
T ss_pred hCCCcCccc---CccccCCCCeEEEeecCCCCcchHHHHHHHHHHHhChhhEeeCCEEEEEecceEEEEEecCCcceEEE
Confidence 999999887 48999999999999999999999999999999999999999 89999999999999865 456799
Q ss_pred eChHHHHHHHHHhcCCCccCcEEeccc----------ccC-------------------------c--------------
Q psy7164 607 YSLPEFEEWKEETTNWHTYKIKYYKVV----------YVT-------------------------G-------------- 637 (2307)
Q Consensus 607 ys~~e~~~~~~~~~~~~~~~ikryKGL----------yf~-------------------------~-------------- 637 (2307)
|+++|+++|+++.....+|+||||||| ||. |
T Consensus 579 y~~~e~e~~~~~~~~~~~~~iqryKGLGEm~~~ql~Ett~~~d~~~~~~~~v~~~d~~~~d~~f~~~~~~~RkewI~~~~ 658 (1177)
T 4gfh_A 579 YNMPDYEKWREEESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYIDLAFSKKKADDRKEWLRQYE 658 (1177)
T ss_dssp SSHHHHHHHHHHTGGGSCEEEEEC----CCCHHHHHHHHHTCTTTEEEEECCCTTTHHHHHHHHCGGGHHHHHHHHHHCC
T ss_pred echHHHHHHHHHhcCCCCcceeecccCCcccHHHHHHHHhCcccceEEEEEcccccHHHHHHHHhccchhhHHHHHHhcC
Confidence 999999999988766678999999999 554 0
Q ss_pred ---------------------eeeeecCC------------------------------------------------c--
Q psy7164 638 ---------------------VLLFKMNL------------------------------------------------H-- 646 (2307)
Q Consensus 638 ---------------------l~~f~~~~------------------------------------------------H-- 646 (2307)
+|+|+|.+ |
T Consensus 659 ~~~~~d~~~~~~~~~d~~~~~~~~ys~~~~~RaiP~~~DGlKp~qRkil~~~~~~~~~~~~k~~k~a~~V~~~~~yhHGd 738 (1177)
T 4gfh_A 659 PGTVLDPTLKEIPISDFINKELILFSLADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTAYHHGE 738 (1177)
T ss_dssp TTCCCCSSCSEEEHHHHHHHTHHHHHHHHHHHHSCBTTTCCCHHHHHHHHHHHHTTTTSCEEHHHHHHHHHHHTTCCSCH
T ss_pred cccccccccccccHHHHHHhhhhhhhhhhhhhcCchhhhhcCcccceEehhhhhhccCCCccHHHHHHHHHhhhccCCCc
Confidence 44553222 3
Q ss_pred -------------ccCC--------------------Cccc-cc---------------------------CCCCCCccc
Q psy7164 647 -------------KVTS--------------------DSIS-MF---------------------------IGRIEPEWY 665 (2307)
Q Consensus 647 -------------fVGS--------------------D~As-iF---------------------------g~~iEP~vl 665 (2307)
|||| |||| .| |+.+||+||
T Consensus 739 ~s~~~tiv~mAQ~f~gs~~~~Ll~~~GnFGsr~~~g~~~Aa~RYte~rl~~~a~~l~~~~d~~~v~~~~~d~~~~EP~~~ 818 (1177)
T 4gfh_A 739 QSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQEDEKTVEPEWY 818 (1177)
T ss_dssp HHHHHHHHHHHCCSTTSCTTCSBCCBSCCCCTTTTTTTCCCTTTCEECBCTTHHHHSCGGGTTTSCEEEETTEEEEESCC
T ss_pred chHHHHHHHHHHHHHhhCceeeEEccCCCCccCCCCCcccccchhhhhHHHHHHHhcchhccccccCcCCCCCccCcccc
Confidence 9998 6777 22 889999999
Q ss_pred cCCCCeeeecCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCCCCCcccCCCCCcEEEEecCcEEEEEEEEEEEcCCeE
Q psy7164 666 IPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKL 745 (2307)
Q Consensus 666 ppiiP~LLVNGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~~~l~P~ykGf~G~I~~tg~g~~~vrG~~~~~~~~~I 745 (2307)
||+|||||||||+|||||||||||||||+|||+||+++|+|+++.+|.|||+||+|+|+..+.|+|+++|+++..++++|
T Consensus 819 ~p~iP~lLvNGs~GIavGmaT~IPphN~~Evi~~~~~li~~~~~~~l~P~~~g~~G~i~~~~~gr~~~~g~~e~~~~~~i 898 (1177)
T 4gfh_A 819 LPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGWTGTIEEIEPLRYRMYGRIEQIGDNVL 898 (1177)
T ss_dssp CCSSCSTTTTCEEEECSSCEEEECCBCHHHHHHHHHHHHTTCCCCCCCBCCTTCCCEEEECSTTCEEEECEEEEEETTEE
T ss_pred ccccchhhccCCCcccccccccCCCCCHHHHHHHHHHHhcCCCHHHcCCCCCCCCCceEeecCcEEEEEEEEEEcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred EEEecCCccchHHHHHHHHHHhcC--CCcC---c----------------------------cc---------------c
Q psy7164 746 EITELQVGKWTTDYKDTLDTLLHG--AEKD---E----------------------------VH---------------P 777 (2307)
Q Consensus 746 vITELPy~v~t~~~~e~La~Lv~~--~~~~---~----------------------------y~---------------~ 777 (2307)
+||||||||||++|+|+|++++.+ +++. + |+ +
T Consensus 899 ~ITELP~~v~~~~~~e~i~~~~~~~~K~~~~I~d~~d~sd~~vrivI~lk~~~~~~~~~~~L~k~t~L~~s~~~~Nm~~~ 978 (1177)
T 4gfh_A 899 EITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAF 978 (1177)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHCCSSSCCCCSEEEECCSSSCCEEEECCHHHHHHHHHHCHHHHTTCEEEECCSCCEEE
T ss_pred EEEeCCccccHHHHHHHHHHHhhhccCcccceeechhcCCCccEEEEEECCCccHHHHHHhHHHhccCcceecceEEEEE
Confidence 999999999999999999999943 3321 1 11 1
Q ss_pred CC-CC---CCCHHHHHHHHHHHHHHHHHHHHHh-----------hhh----HHHhhcc---cCCCch---HHHHHHHhhc
Q psy7164 778 GP-GR---KSHPRPIAPKSYKIDDDSEEEEIEE-----------VFH----DNELAKP---QKTGPQ---LERQERQAAE 832 (2307)
Q Consensus 778 t~-~~---~~sl~eIL~eF~~~Rl~~y~rr~e~-----------l~n----i~~li~~---~~~d~~---~a~~~~~~~~ 832 (2307)
+. ++ +++++|||++|++||+++|+||.++ +++ |+++|.. +..+.. .+..+.....
T Consensus 979 d~~g~i~k~~~l~eiL~~f~~~R~e~~~rRk~~~l~~l~~~l~k~~~r~~fi~~vi~~~L~i~~~~~devI~~Lr~~~~~ 1058 (1177)
T 4gfh_A 979 DPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFP 1058 (1177)
T ss_dssp CTTSCEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSSSCHHHHHHHHHHTTCC
T ss_pred cCCCCccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCeEEEecCCHHHHHHHHHHCCCc
Confidence 11 11 4899999999999999999999665 222 4444432 222221 1211111000
Q ss_pred c-----------------------------------ccccccccCCCCCCChhhHHHHHcCccccccHHHHHHHHHHHHH
Q psy7164 833 G-----------------------------------EDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDD 877 (2307)
Q Consensus 833 ~-----------------------------------~~~~~~~~~~~~~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~e 877 (2307)
. ..+........+..+..||||||+||||+||+||++||++|+++
T Consensus 1059 ~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qydyIL~MrL~~LT~ee~ekL~~E~~e 1138 (1177)
T 4gfh_A 1059 RFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQE 1138 (1177)
T ss_dssp EECSSSCEECCC------------------------------------CTTTCBTHHHHSSBGGGGSHHHHHHHHHHHHH
T ss_pred ccchhhhhhcccchhhhhhhhhhhccccccccccccccchhhhhhcccccccchhhHHhcChHHHHHHHHHHHHHHHHHH
Confidence 0 00000112224567788999999999999999999999999999
Q ss_pred HHHHHHHHHccCchhhHHHHHHHHHHHhCCCC
Q psy7164 878 KMTELNILKKKAPTDLWSDDLDALREKDKIHP 909 (2307)
Q Consensus 878 l~~ei~~L~~~s~~~lw~~DL~el~k~l~k~~ 909 (2307)
+++||++|+++++++||++||++|+++|++..
T Consensus 1139 ~~~ei~~L~~~s~~~lw~~DLd~~~~~~~~~~ 1170 (1177)
T 4gfh_A 1139 KETELENLLKLSAKDIWNTDLKAFEVGYQEFL 1170 (1177)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998754
No 2
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=100.00 E-value=9.6e-115 Score=1099.00 Aligned_cols=455 Identities=54% Similarity=0.910 Sum_probs=353.5
Q ss_pred ccccccccccCCCCCCCcEEEEEecCccchhcccCcccccccceeeccCCcccchhhccchHHHhhcHHHHHHHHHhccc
Q psy7164 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQ 534 (2307)
Q Consensus 455 lpKL~Dc~~a~tk~~~~ceLfIvEGDSA~~~a~sGsak~gRD~qaIlPLRGKiLNV~ka~~~ki~~N~EI~~Li~aLGlg 534 (2307)
+|||+|||.|+++++++|||||||||||||+|++|||+||||+|||||||||||||++|+.+||++|+||++||+|||||
T Consensus 36 lpKL~Dan~a~~kd~~~~eLflvEGDSAg~~a~sGsak~gRdr~ailPLRGKiLNv~ka~~~ki~~N~Ei~~ii~alG~g 115 (803)
T 3qx3_A 36 IPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQ 115 (803)
T ss_dssp CTTCBCCTTTTSTTGGGCEEEEEEHHHHHHHHHTTSTTGGGTTEEEEEECSSCCCCTTCCHHHHHHCHHHHHHHHHHTCC
T ss_pred CCccccccccccCChhheEEEEecCCcchhhhhcccceecccccccccccCcchhhhhccHHHHhcCHHHHHHHHHhCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCCcCCCCCCCCCcEEecccCCCCCCchhHHHHHHHHHhhhhhhcCCcEEEecCcEEEEEeCCeEEEEeChHHHHH
Q psy7164 535 YSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEE 614 (2307)
Q Consensus 535 ~~~~y~~~~d~~~LRYgkIiImTDaDvDG~HI~~LLltff~r~~p~Li~~G~vy~~~tPL~kv~~gk~~~~fys~~e~~~ 614 (2307)
+|++|++.+|+++||||||||||||||||+||+||||||||||||+||+.||||+|+||||+|++|+++.|||+++||++
T Consensus 116 ~g~~~~~~~d~~~LRY~kIiIMTDADvDGsHI~~LLltff~r~~p~Li~~G~vyia~pPL~kv~~gk~~~~~ys~~e~~~ 195 (803)
T 3qx3_A 116 YKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDE 195 (803)
T ss_dssp TTCCCCSTTGGGGCSCSEEEEECCSSHHHHHHHHHHHHHHHHHCGGGGGTTCEEEECC----------------------
T ss_pred cCccccccccccccccceEEEecCCCcccccchhHHHHHHHHHhHHHHhcCeEEEecCceEEEecCCeeEEEecHHHHHH
Confidence 99999778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCccCcEEeccc----------ccC------------------------------------------------
Q psy7164 615 WKEETTNWHTYKIKYYKVV----------YVT------------------------------------------------ 636 (2307)
Q Consensus 615 ~~~~~~~~~~~~ikryKGL----------yf~------------------------------------------------ 636 (2307)
|++++.+.++|+||||||| ||.
T Consensus 196 ~~~~~~~~~~~~iqryKGLGem~~~el~ettmd~~~~r~~~~~~~~~d~~~~d~~F~k~~~~~RK~wi~~~~~~~~~~~~ 275 (803)
T 3qx3_A 196 WKKHIENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSKKKIDDRKEWLTNFMEDRRQRRL 275 (803)
T ss_dssp ------------------------CHHHHHHHTHHHHEEEEECCSHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCcccccccccCCCCHHHHHHHhcCcccceEEEEeCCcchHHHHHHHhcCCChHHHHHHHHHhhhhhccccc
Confidence 9988765578999999999 553
Q ss_pred -c-----------------------eeeeecCC-----------------------------------------------
Q psy7164 637 -G-----------------------VLLFKMNL----------------------------------------------- 645 (2307)
Q Consensus 637 -~-----------------------l~~f~~~~----------------------------------------------- 645 (2307)
| ||+|++.|
T Consensus 276 ~~~p~~~l~d~~~~~i~y~dFInkELi~FS~adn~RaiP~v~DGLKPvqRriLy~m~~~~~~~~~K~A~~vG~vse~~~Y 355 (803)
T 3qx3_A 276 HGLPEQFLYGTATKHLTYNDFINKELILFSNSDNERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSAY 355 (803)
T ss_dssp SCC----------CEEEHHHHHHHTHHHHHHHHHHHHSCBTTTSCCHHHHHHHHHHHHHCCSSCEEHHHHHHHHHHHHTC
T ss_pred cCCCccccccCccceeeHHHhhhHHHHHHHHHhhccCCCchhhCCCcccceeeHhhhccCCCCceeEEEEeeehhhhccC
Confidence 0 45563322
Q ss_pred -c---------------ccCC--------------------Cccc-cc---------------------------CCCCC
Q psy7164 646 -H---------------KVTS--------------------DSIS-MF---------------------------IGRIE 661 (2307)
Q Consensus 646 -H---------------fVGS--------------------D~As-iF---------------------------g~~iE 661 (2307)
| |||| |+|| .| |+.+|
T Consensus 356 HHGd~siy~aiV~mAQ~f~GS~~~~Ll~~~GnFGsr~~~gd~aAA~RYte~rLs~~a~~l~~~~d~~~vd~~ydd~~~~E 435 (803)
T 3qx3_A 356 HHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFLYDDNQRVE 435 (803)
T ss_dssp CSCHHHHHHHHHHHHCCSTTSCSSCSBCCBSCCCCTTTTTTTCCCTTSCEECBCTTHHHHSCHHHHTTSCEEEETTEEEE
T ss_pred CCChHHHHHHHHHHhcchhhhccccccccCCCcCCCCCCCCcccchhhhheeccHHHHHHhhcccccccccccCCCcccc
Confidence 3 8876 4666 22 66899
Q ss_pred CccccCCCCeeeecCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCCCCCcccCCCCCcEEEEecCcEEEEEEEEEEEc
Q psy7164 662 PEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNFKGEIDYCGDSRFVVNGEIAILD 741 (2307)
Q Consensus 662 P~vlppiiP~LLVNGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~~~l~P~ykGf~G~I~~tg~g~~~vrG~~~~~~ 741 (2307)
|+||||+|||||||||+|||||||||||||||+|||+||+++|+|+++.++.|||+||+|+|+.+|+|+|++||++++++
T Consensus 436 P~vlp~~iP~lLvNGa~GIavGmaTnIPphNl~Evi~a~~~ll~~~~~~pd~P~~~gf~G~i~~tGrg~~~~rg~~~~~~ 515 (803)
T 3qx3_A 436 PEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKNFKGTIQELGQNQYAVSGEIFVVD 515 (803)
T ss_dssp ESCCCCSSCHHHHTTCEEECSSCEEECCCCCHHHHHHHHHHHHTTCCCCCCCCCCTTCCSEEEEEETTEEEEECEEEEEE
T ss_pred cccccccCCeeeecCCcceEeeeecCCCCCCHHHHHHHHHHHhcCCCCCCCCCccCCCcceEEecCCcEEEEEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCccchHHHHHH-HHHHhcC--CCcC---c-----------------------------cccCCCC-----
Q psy7164 742 DDKLEITELQVGKWTTDYKDT-LDTLLHG--AEKD---E-----------------------------VHPGPGR----- 781 (2307)
Q Consensus 742 ~~~IvITELPy~v~t~~~~e~-La~Lv~~--~~~~---~-----------------------------y~~t~~~----- 781 (2307)
+++|+||||||++||+.|++. |+.+.+. +++. + |++++.+
T Consensus 516 ~~~IvITELPy~~~t~~~k~~lle~i~~~~~K~~~~I~d~rDes~~~gvrivI~Lk~~~~~~~vl~~Lyk~t~Lq~sf~~ 595 (803)
T 3qx3_A 516 RNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTC 595 (803)
T ss_dssp TTEEEEEECCTTCCHHHHHHHTHHHHHHCCSSSCCCCSEEEECCCSSCCCEEEECCHHHHHHHHHHCHHHHTTCEEEEEC
T ss_pred CCEEEEEECCCccchhHHHHHHHHHHHhhcccCCcceeeccccCCCCceEEEEEEcCCchHHHHHHHHHHhcCCeEEeec
Confidence 999999999999999999996 5555432 2211 1 2222221
Q ss_pred --------------CCCHHHHHHHHHHHHHHHHHHHHHh-----------hhh-----------------------HHHh
Q psy7164 782 --------------KSHPRPIAPKSYKIDDDSEEEEIEE-----------VFH-----------------------DNEL 813 (2307)
Q Consensus 782 --------------~~sl~eIL~eF~~~Rl~~y~rr~e~-----------l~n-----------------------i~~l 813 (2307)
+++++|||++|++||+++|+||.++ |.| +++|
T Consensus 596 n~~~l~d~~g~~pk~~~l~eiL~~F~~~R~ev~~rR~~~lL~kLq~el~kL~nk~rFI~~vi~g~l~i~nkkk~~li~eL 675 (803)
T 3qx3_A 596 NSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQML 675 (803)
T ss_dssp CCEEEECTTSCEEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCCHHHHHHHH
T ss_pred eeEEEECCCCCcceeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeecCCcHHHHHHHH
Confidence 4899999999999999999999877 222 5666
Q ss_pred hcc-cCCCchHHHHHHHhhcccccc-ccc----cCCCCCCChhhHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHc
Q psy7164 814 AKP-QKTGPQLERQERQAAEGEDDE-AGS----QTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKK 887 (2307)
Q Consensus 814 i~~-~~~d~~~a~~~~~~~~~~~~~-~~~----~~~~~~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~el~~ei~~L~~ 887 (2307)
.+. |.++|..+|+..+...+..+. ... ..........+|||||+||||+||.|++++|++|++++++|+++|++
T Consensus 676 ~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydYLL~M~i~sLT~E~~~kL~~q~~~k~~El~~L~~ 755 (803)
T 3qx3_A 676 VQRGYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKR 755 (803)
T ss_dssp HHTTCCSCHHHHHHHHCC-----------------------CCCCHHHHTSBGGGGSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCCCchhhhhhhccccccccccccccccccccccccccchhHHhCCchhhcCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 666 888888777654432211110 000 01112334558999999999999999999999999999999999999
Q ss_pred cCchhhHHHHHHHHHHHhCCCC
Q psy7164 888 KAPTDLWSDDLDALREKDKIHP 909 (2307)
Q Consensus 888 ~s~~~lw~~DL~el~k~l~k~~ 909 (2307)
+||++||++||++|+++|++..
T Consensus 756 ~t~~dlW~~DLd~f~~~~~~~e 777 (803)
T 3qx3_A 756 KSPSDLWKEDLAAFVEELDKVE 777 (803)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997653
No 3
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=100.00 E-value=7.9e-112 Score=1072.84 Aligned_cols=452 Identities=47% Similarity=0.768 Sum_probs=381.5
Q ss_pred ccccccccccCCCCCCCcEEEEEecCccchhcccCcccccccceeeccCCcccchhhccchHHHhhcHHHHHHHHHhccc
Q psy7164 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQ 534 (2307)
Q Consensus 455 lpKL~Dc~~a~tk~~~~ceLfIvEGDSA~~~a~sGsak~gRD~qaIlPLRGKiLNV~ka~~~ki~~N~EI~~Li~aLGlg 534 (2307)
+|||+|||.||++++++|||||||||||||+|++|++++|||+|||||||||||||++++.+||++|+||++||+||||+
T Consensus 6 ~~KL~Dc~~a~~k~~~~~el~lvEGDSAggsak~gr~~~gR~~qailPLrGKiLNv~ka~~~ki~~n~Ei~~i~~alG~~ 85 (757)
T 3l4j_A 6 YPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQ 85 (757)
T ss_dssp CSSCBCCTTSSSTTTTTCEEEEEEHHHHHHHHHHHHHHHCSTTEEEEEECSSCCCCTTCCHHHHHHCHHHHHHHHHTTCC
T ss_pred CcCccccccccCCCccceEEEEeecccchhhHhhcccccCcccccccccCCcccchhhccHHHhhcCHHHHHHHHHhCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCCcCCCCCCCCCcEEecccCCCCCCchhHHHHHHHHHhhhhhhc-CCcEEEecCcEEEEE---eCCeEEEEeChH
Q psy7164 535 YSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR-LPFLEEFITPIIKAT---KAREELSFYSLP 610 (2307)
Q Consensus 535 ~~~~y~~~~d~~~LRYgkIiImTDaDvDG~HI~~LLltff~r~~p~Li~-~G~vy~~~tPL~kv~---~gk~~~~fys~~ 610 (2307)
+|++| +|+++||||||||||||||||+||+||||||||||||+||+ .||||+|+||||+|+ +|+++.|||+++
T Consensus 86 ~g~~~---~~~~~lRY~kiiImtDaD~DG~HI~~Llltff~r~~p~Li~~~G~vy~~~~Pl~kv~~~~~gk~~~~~ys~~ 162 (757)
T 3l4j_A 86 HRKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMP 162 (757)
T ss_dssp CSSCC---CCGGGSSCSEEEEECCSSHHHHHHHHHHHHHHHHHSTTSTTSTTCEEEECCCSEEEEECSSSCCEEEESSHH
T ss_pred cCccc---ccccccCcceEEEecCcccccccchhHHHHHHHHHhHHHhccCCEEEEecCceEEEeeccCCcceEEecCHH
Confidence 99876 69999999999999999999999999999999999999999 899999999999999 788899999999
Q ss_pred HHHHHHHHhcCCCccCcEEeccc----------ccCc-------------------------------------------
Q psy7164 611 EFEEWKEETTNWHTYKIKYYKVV----------YVTG------------------------------------------- 637 (2307)
Q Consensus 611 e~~~~~~~~~~~~~~~ikryKGL----------yf~~------------------------------------------- 637 (2307)
|+++|+++..+.++|+||||||| ||+.
T Consensus 163 E~~~~~~~~~~~~~~~iqryKGLGem~~~ql~e~f~~m~~~~r~l~~~~~~d~~~~d~~f~~~~~~~Rk~wi~~~~~~~~ 242 (757)
T 3l4j_A 163 DYEKWREEESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYIDLAFSKKKADDRKEWLRQYEPGTV 242 (757)
T ss_dssp HHHHHHHHTGGGSCEEEEECCTTTTSCHHHHHHHHHTCTTTEEEECCCCTTHHHHHHHHHCTTCHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHhccCCCCccceecCcCcCCHHHHHHHhcCcCceeEEEEecCccHHHHHHHHhCcCcchHHHHHHHhcCCccc
Confidence 99999998765578999999999 7650
Q ss_pred -----------------eeee----------------------------ecCC--------------------c------
Q psy7164 638 -----------------VLLF----------------------------KMNL--------------------H------ 646 (2307)
Q Consensus 638 -----------------l~~f----------------------------~~~~--------------------H------ 646 (2307)
+|.| ++++ |
T Consensus 243 ld~~~~~~~~~~~~~~~~i~ysm~~~~RAlPdv~DGLKPvqRrILyam~~~~~~~~~K~A~ivG~V~~~~~YHHGD~siy 322 (757)
T 3l4j_A 243 LDPTLKEIPISDFINKELILFSLADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTAYHHGEQSLA 322 (757)
T ss_dssp CCSSCSEECHHHHHHHTHHHHHHHHHHHHSCBTTTCCCHHHHHHHHHHHHTTTTSCEEHHHHHHHHHHHTTCCSCHHHHH
T ss_pred cccceeeecHHHHHHHHHHHHhhhhhhccCchhhccCCchheeeehhhhhhCCCcCcceeeeehhhhhhcccCCCchHHH
Confidence 2333 1111 3
Q ss_pred ---------ccCC--------------------Cccc-cc---------------------------CCCCCCccccCCC
Q psy7164 647 ---------KVTS--------------------DSIS-MF---------------------------IGRIEPEWYIPII 669 (2307)
Q Consensus 647 ---------fVGS--------------------D~As-iF---------------------------g~~iEP~vlppii 669 (2307)
|||| |+|| .| |+.+||+||||+|
T Consensus 323 daiVrmAQ~f~gS~~~pLldgqGNFGS~~~~gd~aAA~RYte~rLs~~a~~l~~d~d~~~vdf~~~Dg~~~EP~vlp~~i 402 (757)
T 3l4j_A 323 QTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQEDEKTVEPEWYLPIL 402 (757)
T ss_dssp HHHHHHHCCSTTSCSSCSBCCBSCCCCTTTTTTTCCCTTTCEECBCTTHHHHSCGGGGGGSCEEECSSSEEEESCCCCSS
T ss_pred HHHHHHhccchhhcccceeccCCCCCCcCCCCCcccccchhhhchhHHHHHHhcccccCcccCcCCCCCccCCccccccc
Confidence 9876 4555 22 9999999999999
Q ss_pred CeeeecCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCCCCCcccCCCCCcEEEEecCcEEEEEEEEEEEcCCeEEEEe
Q psy7164 670 PMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITE 749 (2307)
Q Consensus 670 P~LLVNGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~~~l~P~ykGf~G~I~~tg~g~~~vrG~~~~~~~~~IvITE 749 (2307)
||||||||+|||||||||||||||+|||+||+++|+|+++.+|.|||+||.|+|+.+|+|+|++||+++..++++|+|||
T Consensus 403 P~lLvNGs~GIavGmATnIPphNl~Evi~a~~~~i~~~~~~~l~p~~~G~~G~i~~~g~G~~~~rg~~e~~~~~~IvITE 482 (757)
T 3l4j_A 403 PMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGWTGTIEEIEPLRYRMYGRIEQIGDNVLEITE 482 (757)
T ss_dssp CHHHHHCEEEECSSCEEEECCCCHHHHHHHHHHHHTTCCCCCCCCCCTTCCSEEEEEETTEEEEECEEEEEETTEEEEEE
T ss_pred chhhhcCCcceEeeeccCCCCCCHHHHHHHHHHHhcCCChhhhcccccCCCceEEecCCcEEEEEEEEEEcCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred cCCccchHHHHHHHHHHh--cCCCcCc-------------------------------cc---------------cCC-C
Q psy7164 750 LQVGKWTTDYKDTLDTLL--HGAEKDE-------------------------------VH---------------PGP-G 780 (2307)
Q Consensus 750 LPy~v~t~~~~e~La~Lv--~~~~~~~-------------------------------y~---------------~t~-~ 780 (2307)
||||+||++|+|+|++|+ +++++.+ |+ ++. +
T Consensus 483 lPy~v~~~~lie~I~~lv~~~~K~~~~I~dirDesd~gvrivI~lk~~~~~~~~l~~L~k~t~Lq~sf~~~nm~l~d~~g 562 (757)
T 3l4j_A 483 LPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHG 562 (757)
T ss_dssp CCTTCCHHHHHHHHHHHHHCCSSSCCCCSEEEECCSSSCCEEEECCHHHHHHHHHHCHHHHTTCEEEEECSCCEEECTTS
T ss_pred CCCccCHHHHHHHHHHHHhhccCCCccceehhhcCCCcEEEEEEecCCcchHHHHHHHHHhcCCeEEeccceEEEEcCCC
Confidence 999999999999999999 4333211 21 111 2
Q ss_pred C---CCCHHHHHHHHHHHHHHHHHHHHHh-----------hhhH-----------------------HHhhcc-cCCCch
Q psy7164 781 R---KSHPRPIAPKSYKIDDDSEEEEIEE-----------VFHD-----------------------NELAKP-QKTGPQ 822 (2307)
Q Consensus 781 ~---~~sl~eIL~eF~~~Rl~~y~rr~e~-----------l~ni-----------------------~~li~~-~~~d~~ 822 (2307)
+ ++++++||++|++||+++|+||.++ ++|. ++|.+. |.+++.
T Consensus 563 ~~~~~~~l~eiL~~f~~~R~ev~~rR~~~~l~k~~~~l~~l~nk~rFI~~vi~g~l~i~nkkk~~li~eL~~~~f~~~~~ 642 (757)
T 3l4j_A 563 KIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNK 642 (757)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSSSCHHHHHHHHHHTTCCEECS
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCeeEEcCCcHHHHHHHHHHcCCCCCcc
Confidence 2 5899999999999999999999877 3332 333333 333331
Q ss_pred HHHHHHH-----hhccccccccc-cCC---------------CCCCChhhHHHHHcCccccccHHHHHHHHHHHHHHHHH
Q psy7164 823 LERQERQ-----AAEGEDDEAGS-QTQ---------------EEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTE 881 (2307)
Q Consensus 823 ~a~~~~~-----~~~~~~~~~~~-~~~---------------~~~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~el~~e 881 (2307)
..+.... ...+.++..+. ..+ .-.....+|||||+||||+||.|++++|++|++++++|
T Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydYLL~M~i~sLT~E~~~kL~~q~~~k~~E 722 (757)
T 3l4j_A 643 EGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETE 722 (757)
T ss_dssp SCCEECCC------------------------------------CTTTCBSHHHHTSCGGGGSHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhhccccccccccccccccCcccccCchHHHhCCchhccCHHHHHHHHHHHHHHHHH
Confidence 1100000 00000000000 000 00112258999999999999999999999999999999
Q ss_pred HHHHHccCchhhHHHHHHHHHHHhCCCC
Q psy7164 882 LNILKKKAPTDLWSDDLDALREKDKIHP 909 (2307)
Q Consensus 882 i~~L~~~s~~~lw~~DL~el~k~l~k~~ 909 (2307)
++.|+++||++||++||++|+++|++..
T Consensus 723 l~~L~~~t~~dlW~~DLd~f~~~~~~~~ 750 (757)
T 3l4j_A 723 LENLLKLSAKDIWNTDLKAFEVGYQEFL 750 (757)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999997653
No 4
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=100.00 E-value=2.1e-100 Score=980.38 Aligned_cols=434 Identities=21% Similarity=0.307 Sum_probs=360.4
Q ss_pred cccc-ccccccccCCCCCCCcEEEEEecCccchhcccCcccccccc--eeeccCCcccchhhccchHHHhhcHHHHHHHH
Q psy7164 453 TCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPLRGKLLNVREATHKQILENAEINNLVK 529 (2307)
Q Consensus 453 k~lp-KL~Dc~~a~tk~~~~ceLfIvEGDSA~~~a~sGsak~gRD~--qaIlPLRGKiLNV~ka~~~ki~~N~EI~~Li~ 529 (2307)
..+| ||+||+ ++++++|||||||||||| ||||+|||+ |||||||||||||+||+.+||++|+||++||+
T Consensus 27 ~~lpgKL~dc~---~~~~~~~eL~lvEGDSAg-----Gsak~gRdr~~qailPLRGKiLNv~ka~~~ki~~n~Ei~~i~~ 98 (767)
T 2xkj_E 27 PALPGKLADCV---GQTREESELFIVEGDSAG-----GSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIAI 98 (767)
T ss_dssp CSSTTTCBCCC---C-CGGGCEEEEEEHHHHH-----HHHHHHSCTTTEEEEEESSCCCCCTTSCTTTGGGSHHHHHHHH
T ss_pred ccCcHhhHhcc---cCCCcceEEEEeeCCCCc-----chhhhcCCcccccccccccchhhhhcCCHHHHhccHHHHHHHH
Confidence 3355 999995 689999999999999999 677899995 99999999999999999999999999999999
Q ss_pred HhccccCCCcCCcCCCCCCCCCcEEecccCCCCCCchhHHHHHHHHHhhhhhhcCCcEEEecCcEEEEEeCCeEEEEeCh
Q psy7164 530 ILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSL 609 (2307)
Q Consensus 530 aLGlg~~~~y~~~~d~~~LRYgkIiImTDaDvDG~HI~~LLltff~r~~p~Li~~G~vy~~~tPL~kv~~gk~~~~fys~ 609 (2307)
||||++|. +|+++||||||||||||||||+||+||||||||||||+||+.||||+|+||||+|++||++.|||++
T Consensus 99 alG~~~g~-----~~~~~lRY~kiiImtDaDvDG~HI~~Llltff~r~~p~Li~~G~vy~a~pPl~kv~~gk~~~y~~~~ 173 (767)
T 2xkj_E 99 AIGVDPGS-----DDLSELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMPPLFRIDIGKDVHYALDD 173 (767)
T ss_dssp HHTCCTTC-----CCCTTCCCSEEEEECCSSHHHHHHHHHHHHHHHHHCHHHHHTTCEEEECCCSEEEEETTEEEEESSH
T ss_pred HhCCCccc-----ccccccccceEEEeecCCCCcchhhHHHHHHHHHHhHHHHhcCcEEEecCCEEEEEECCEEEeeeCH
Confidence 99999984 3899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccCcEEeccc----------ccC--------------------------c----------------
Q psy7164 610 PEFEEWKEETTNWHTYKIKYYKVV----------YVT--------------------------G---------------- 637 (2307)
Q Consensus 610 ~e~~~~~~~~~~~~~~~ikryKGL----------yf~--------------------------~---------------- 637 (2307)
+|+++|++++++.++|+||||||| ||. |
T Consensus 174 ~e~~~~~~~~~~~~~~~IqRYKGLGEmnp~ql~ETtmdp~~R~L~~v~i~da~~ad~~f~~lmgkk~ve~RKewI~~~~~ 253 (767)
T 2xkj_E 174 EELETILKNVKGNKNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDAHLTAGLLDKLLAKKRAADRKQWLEQKGN 253 (767)
T ss_dssp HHHHHHHHTCCSSCCCEEEECCCGGGSCHHHHHHHHTCTTTCCEEEEECCSHHHHHHHHHHHHCGGGHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhhcCCCCceecccCCCCCCHHHHhHhhcCccceEEEEEEcccHHHHHHHHHHHhCCCCchHHHHHHHhcCc
Confidence 999999998866567999999999 322 0
Q ss_pred --------------------------------eeee-----------------------------ecCC-----------
Q psy7164 638 --------------------------------VLLF-----------------------------KMNL----------- 645 (2307)
Q Consensus 638 --------------------------------l~~f-----------------------------~~~~----------- 645 (2307)
++.| +|++
T Consensus 254 ~~~~d~~~~~~~~~~~~~~~~~i~i~d~~~~~~l~YamsvI~~RAlPdv~DGLKPvqRRILyam~~~~l~~~~~~~K~Ar 333 (767)
T 2xkj_E 254 LADITVEDKLTMTSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSAR 333 (767)
T ss_dssp GCC-----------------CEEEHHHHHHHHHHHHHHHHHHHHTCCBTTTSCCHHHHHHHHHHHHTTCCTTSCCEEHHH
T ss_pred cccchhhhcccccccccCCceeeeHHHHHHHHHHHHHHHHhhccCCCchhhcCCccchhhhHHHHHhCCCCCCCeeeeee
Confidence 0111 1111
Q ss_pred -----------c---------------------------ccCC---C-c-cc-cc-------------------------
Q psy7164 646 -----------H---------------------------KVTS---D-S-IS-MF------------------------- 656 (2307)
Q Consensus 646 -----------H---------------------------fVGS---D-~-As-iF------------------------- 656 (2307)
| -.|| | + || .|
T Consensus 334 ivG~V~gkYHPHGD~SiydaiVrmAQ~fs~r~pLldg~GNFGS~dgd~a~AA~RYte~rLs~ia~~ll~~~d~~tvdf~~ 413 (767)
T 2xkj_E 334 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQD 413 (767)
T ss_dssp HHHHHHHHTCCSCHHHHHHHHHHHHCTTTCSSCSEECSSCCCBTTBTTCCCCTTTCEEEECGGGHHHHTTTTTTCSCEEE
T ss_pred hHHHHhhccCCCchhHHHHHHHHHhhhhhcccceeecCCCCCCCCCCcccccccceeeeHhHHHHHHHhhcCccccccCc
Confidence 2 2344 2 2 44 22
Q ss_pred ---CCCCCCccccCCCCeeeecCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCCC--CC-----cccCCCCCcEEE--
Q psy7164 657 ---IGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPL--PM-----KPWYKNFKGEID-- 724 (2307)
Q Consensus 657 ---g~~iEP~vlppiiP~LLVNGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~~--~l-----~P~ykGf~G~I~-- 724 (2307)
|+.+||+||||+|||||||||+|||||||||||||||+|||+||+++|+|+++. +| .|||||+ |.|.
T Consensus 414 n~Dg~~~EP~vlp~~iP~lLvNGa~GIavGmaT~IPphNl~Evi~a~~~li~~~~~~~~~l~~~i~gPdFptg-G~I~~~ 492 (767)
T 2xkj_E 414 NFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTK-AEIITP 492 (767)
T ss_dssp CTTSSSEEESSCCCSSCHHHHHCEEEEETTEEEEECCCCHHHHHHHHHHHHHCTTCCHHHHHHHCCSCCCSSS-CEECCC
T ss_pred CCCCcccCchhccccccHHHhcCCCccccccccCCCCCCHHHHHHHHHHHhcCCCCCHHHHHhhCCCCCCCCC-ceEecC
Confidence 999999999999999999999999999999999999999999999999999873 23 4888885 6663
Q ss_pred --------EecCcEEEEEEEEEEEcCCeEEEEecCCccchHHHHHHHHHHhcCCCcCc----------------------
Q psy7164 725 --------YCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE---------------------- 774 (2307)
Q Consensus 725 --------~tg~g~~~vrG~~~~~~~~~IvITELPy~v~t~~~~e~La~Lv~~~~~~~---------------------- 774 (2307)
.+|+|+|++||++++++ ++|+||||||||||++|+|+|++|++++++.+
T Consensus 493 ~~~i~~~Y~tGrG~i~~rg~~~ie~-~~ivITElPy~v~~~~~ie~I~~l~~~kki~~I~d~rDesd~~~gvrivI~lk~ 571 (767)
T 2xkj_E 493 PEELLKIQTTGRGSYRMRAVYTIEK-NEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRS 571 (767)
T ss_dssp HHHHHHHHHHSEEEEEEECEEEEET-TEEEEEECCTTCCHHHHHHHHHHHHHTTCCTTEEEEEECCCSSCSSCEEEEESC
T ss_pred chhhHHHhccCCeeEEEEEEEEEEC-CEEEEEeCCCcCcHHHHHHHHHHHHhcCCCCceeehhhccCCCCcEEEEEEECc
Confidence 48999999999999875 78999999999999999999999998876332
Q ss_pred ------------cccCCCC-----------------CCCHHHHHHHHHHHHHHHHHHHHHh-hhh-------HHHhhcc-
Q psy7164 775 ------------VHPGPGR-----------------KSHPRPIAPKSYKIDDDSEEEEIEE-VFH-------DNELAKP- 816 (2307)
Q Consensus 775 ------------y~~t~~~-----------------~~sl~eIL~eF~~~Rl~~y~rr~e~-l~n-------i~~li~~- 816 (2307)
|+.|+.+ ++++++||++|++||+++|+||+++ |.+ +++++.+
T Consensus 572 ~~~~~~~vl~~L~k~T~Lq~sf~~Nm~~l~~~g~p~~~~l~~iL~~f~~~R~~v~~rR~~~~L~k~~~r~hiLegl~ia~ 651 (767)
T 2xkj_E 572 NRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRIEKRLHILAGLLIAY 651 (767)
T ss_dssp TTSCHHHHHHHHHHHSTTEEEEEEECEEECTTSCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcchhhhcccceEEEccCCeeEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 1111111 3999999999999999999999988 222 4444444
Q ss_pred cCCCchHHHHHHHhhccccccccccCCCCCCChhhHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHcc--Cc---h
Q psy7164 817 QKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKK--AP---T 891 (2307)
Q Consensus 817 ~~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~el~~ei~~L~~~--s~---~ 891 (2307)
..-|.+...++.+. +....+++.|.+++.|++|||+|+|+|||++|++||++|+++|+++|++|+.+ ++ .
T Consensus 652 ~~iD~vI~iIr~s~-----~~k~~L~~~f~lse~qa~aIl~mrL~rLt~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~ 726 (767)
T 2xkj_E 652 LDIDTVIRIIREED-----QPKPVLMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLK 726 (767)
T ss_dssp TTHHHHHHHHHHCS-----SHHHHHHHHHTCCHHHHHHHHHSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHhcc-----chHHHHHHhcCCCHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 22223333222211 11234555688999999999999999999999999999999999999999987 44 4
Q ss_pred hhHHHHHHHHHHHhC
Q psy7164 892 DLWSDDLDALREKDK 906 (2307)
Q Consensus 892 ~lw~~DL~el~k~l~ 906 (2307)
.+|+++|.+++++|.
T Consensus 727 ~~i~~el~~~~~~yg 741 (767)
T 2xkj_E 727 NLIISELKEDAKKFG 741 (767)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC
Confidence 567888888888774
No 5
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=100.00 E-value=3.8e-93 Score=903.98 Aligned_cols=435 Identities=21% Similarity=0.315 Sum_probs=337.1
Q ss_pred cccccccccCCCCCCCcEEEEEecCccchhcccCcccccccc--eeeccCCcccchhhccchHHHhhcHHHHHHHHHhcc
Q psy7164 456 PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPLRGKLLNVREATHKQILENAEINNLVKILGL 533 (2307)
Q Consensus 456 pKL~Dc~~a~tk~~~~ceLfIvEGDSA~~~a~sGsak~gRD~--qaIlPLRGKiLNV~ka~~~ki~~N~EI~~Li~aLGl 533 (2307)
+||+|| +++++++|||||||||||| |||++|||+ |||||||||||||++|+.+||++|+||++|++||||
T Consensus 8 gkl~dc---~~~~~~~~eL~lvEGDSA~-----Gsak~gRd~~~qai~PLrGKiLNv~~a~~~~i~~n~Ei~~i~~alG~ 79 (692)
T 2xcs_B 8 GKLADC---SSKSPEECEIFLVEGDSAG-----GSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGT 79 (692)
T ss_dssp -CCBCC---SCCCTTTCEEEEESSHHHH-----HHHHHHSCTTTEEEEECCSSCCCTTTSCHHHHHTCHHHHHHHHHHCS
T ss_pred chhhcC---CCCCcccceEEEecCCccc-----CcccccccccccccccccCcccchhhCcHHHhhccHHHHHHHHHhCC
Confidence 499999 4789999999999999998 677899997 999999999999999999999999999999999999
Q ss_pred ccCCCcCCcCCCCCCCCCcEEecccCCCCCCchhHHHHHHHHHhhhhhhcCCcEEEecCcEEEEEeC---------Ce--
Q psy7164 534 QYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKA---------RE-- 602 (2307)
Q Consensus 534 g~~~~y~~~~d~~~LRYgkIiImTDaDvDG~HI~~LLltff~r~~p~Li~~G~vy~~~tPL~kv~~g---------k~-- 602 (2307)
++|++ +|+++||||||||||||||||+||+||||||||||||+||++||||+++||++ .|| ++
T Consensus 80 ~~g~~----~~~~~lrY~kiiImTDaD~DGsHI~~Llltff~r~~~~Li~~g~vyia~pP~~--yKGLGem~~~ql~et~ 153 (692)
T 2xcs_B 80 GIGGD----FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPTG--YKGLGEMNADQLWETT 153 (692)
T ss_dssp CCGGG----CCGGGCSCSEEEECCCSSHHHHHHHHHHHHHHHHHCHHHHHTTCEEECCCCSS--CSSGGGSCHHHHHHHH
T ss_pred CcCcc----ccccccccceEEEeecCCCCcchhhhHHHHHHHHhChHHhhcCeeEEecCchh--hcccccCCHHHHHHHh
Confidence 99976 47899999999999999999999999999999999999999999999999984 333 00
Q ss_pred --------EEEEeCh----------------HHHHHHHHHhcCCCccCcEEe-cc----c---------cc--C------
Q psy7164 603 --------ELSFYSL----------------PEFEEWKEETTNWHTYKIKYY-KV----V---------YV--T------ 636 (2307)
Q Consensus 603 --------~~~fys~----------------~e~~~~~~~~~~~~~~~ikry-KG----L---------yf--~------ 636 (2307)
...-+++ ++..+|..+........+.++ ++ + |. +
T Consensus 154 m~p~~r~l~~v~~~d~~~~~~~~~~lmg~~~~~Rk~~i~~~~~~~~ld~~eL~~~~i~~~~i~~~~~~~~l~Yamsvi~~ 233 (692)
T 2xcs_B 154 MNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYANLDFAELPQSRINERNITSEMRESFLDYAMSVIVA 233 (692)
T ss_dssp TCTTTCCCEEEECCCHHHHHHHHHHHHSSCHHHHHHHHHHHCCCCC------------EEEHHHHHHHHHHHHHHHHHHH
T ss_pred cCccceeEEEEecCchhhHHHHHHHHcCCCchHHHHHHHhcCCccccccccccccceeeeeHHHHHHHHHHHHHHHhhhc
Confidence 0122221 334477776542222233111 11 1 11 1
Q ss_pred --------c------eeee---ecCC----------------------c---------------------------ccCC
Q psy7164 637 --------G------VLLF---KMNL----------------------H---------------------------KVTS 650 (2307)
Q Consensus 637 --------~------l~~f---~~~~----------------------H---------------------------fVGS 650 (2307)
| =|+| +|++ | -.||
T Consensus 234 RAlPdv~DGLKPvqRRILyam~~~~l~~~~~~~K~Ar~vG~V~gkYHPHGD~SiydaiVrmAQ~fs~r~pLldg~GNFGS 313 (692)
T 2xcs_B 234 RALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGS 313 (692)
T ss_dssp TSSCBTTTCCCHHHHHHHHHHHHTTCCTTSCCEEHHHHHHHHHHHTCCSCHHHHHHHHHHHHCTTTCSSCSEEEESCCCC
T ss_pred ccCCchhhcCCchhHHHHHHHHHhCCCCCCCceeehhhhHHHHhccCCccHHHHHHHHHHHhhccccccccccCCCCCCC
Confidence 2 1222 2221 2 3355
Q ss_pred ----Cccc-cc----------------------------CCCCCCccccCCCCeeeecCCCceeecccCCCCCCCHHHHH
Q psy7164 651 ----DSIS-MF----------------------------IGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIV 697 (2307)
Q Consensus 651 ----D~As-iF----------------------------g~~iEP~vlppiiP~LLVNGasGIAvGmATnIPPHN~~EVI 697 (2307)
|+|| .| |+.+||+||||+|||||||||+|||||||||||||||+|||
T Consensus 314 ~~Gd~aAA~RYte~rLs~ia~~ll~d~d~~tvdf~~nyDg~~~EP~vlp~~iP~lLvNGa~GIavGmaT~IPphNl~Evi 393 (692)
T 2xcs_B 314 MDGDGAAAMRFTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELI 393 (692)
T ss_dssp TTCCCCCCTTTCEEEECHHHHHHHTTTTTTCSCEEECTTSSCEEESSCCCSSCHHHHHCEEEECSSCEEEECCBCHHHHH
T ss_pred CCCCccccccceeecHHHHHHHHhhhcccccccCCcCCCCCccChhhccccccHHHHcCCCccccceecCCCCCCHHHHH
Confidence 6666 22 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCC--CCCcccCCCC---C-cEE---------EEecCcEEEEEEEEEEEc----CCeEEEEecCCccchHH
Q psy7164 698 DNIKRMIRGEDP--LPMKPWYKNF---K-GEI---------DYCGDSRFVVNGEIAILD----DDKLEITELQVGKWTTD 758 (2307)
Q Consensus 698 dal~~lL~~~~~--~~l~P~ykGf---~-G~I---------~~tg~g~~~vrG~~~~~~----~~~IvITELPy~v~t~~ 758 (2307)
+||+++|+|+++ ++|+||++|+ + |.| |.+|+|+|++||++++++ +++|+|||||||+||++
T Consensus 394 ~a~~~~i~~~~~~~~~l~~~i~gPDFPTGg~I~g~~gi~~~y~tGrG~~~~rg~~~ie~~~~~~~~ivITElPy~v~k~~ 473 (692)
T 2xcs_B 394 NGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKAR 473 (692)
T ss_dssp HHHHHHHTCTTCCHHHHTTTCCSBCCTTCCEEECSHHHHHHHHHSEEEEEEECEEEEEEEETTEEEEEEEECCTTCCHHH
T ss_pred HHHHHHhcCCCCCHHHHHhhCCCCCCCCCceEeCCcceeeeeecCCceEEEEEEEEEEecCCCCceEEEEecCCcccHHH
Confidence 999999999987 4688888874 3 333 348999999999999874 67899999999999999
Q ss_pred HHHHHHHHhcCCCcCc------c---------------------------ccCCCC----------------CCCHHHHH
Q psy7164 759 YKDTLDTLLHGAEKDE------V---------------------------HPGPGR----------------KSHPRPIA 789 (2307)
Q Consensus 759 ~~e~La~Lv~~~~~~~------y---------------------------~~t~~~----------------~~sl~eIL 789 (2307)
|+|+|++|++++++.+ + ++++.| ++++++||
T Consensus 474 lie~I~~lv~~kki~~I~d~rDetsd~~gvrivI~lk~~~~~~~~l~~L~k~t~Lq~s~~~Nm~~l~dg~p~~~~l~~iL 553 (692)
T 2xcs_B 474 MIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEAL 553 (692)
T ss_dssp HHHHHHHHHHTTCSCCEEEEEECCBTTTBSCEEEEECTTSCHHHHHHHHHHHSTTEEEEEEECEEEETTEEEECCHHHHH
T ss_pred HHHHHHHHHhcCCCCCeeeccccCCCCCceEEEEEECCCCCHHHHHHHHHHhccceeeeeeeEEEEECCEEEECCHHHHH
Confidence 9999999999886432 2 122222 39999999
Q ss_pred HHHHHHHHHHHHHHHHh-hhh-------HHHhhcc-cCCCchHHHHHHHhhccccccccccCCCCCCChhhHHHHHcCcc
Q psy7164 790 PKSYKIDDDSEEEEIEE-VFH-------DNELAKP-QKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTF 860 (2307)
Q Consensus 790 ~eF~~~Rl~~y~rr~e~-l~n-------i~~li~~-~~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~q~dyIL~M~L 860 (2307)
++|++||+++|+||+++ |.+ +++++.. ..-|.+...++.+ ....++...+++.|.+++.|++|||+|+|
T Consensus 554 ~~f~~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~~iD~vI~iIr~s--~~~~~a~~~L~~~f~lse~Qa~aIL~m~L 631 (692)
T 2xcs_B 554 VHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRES--DTDKVAMESLQQRFKLSEKQAQAILDMRL 631 (692)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTC--SSHHHHHHHHHHHHTCCHHHHHHHHTCBG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHhC--CCHHHHHHHHhhccCCCHHHHHHHHHhHH
Confidence 99999999999999888 222 3333332 1112222222211 11123334455568899999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHcc--CchhhH---HHHHHHHHHHhC
Q psy7164 861 WSLTMERKNELLKKRDDKMTELNILKKK--APTDLW---SDDLDALREKDK 906 (2307)
Q Consensus 861 ~rLT~ee~~kL~~E~~el~~ei~~L~~~--s~~~lw---~~DL~el~k~l~ 906 (2307)
||||++|++||++|+++++++|++|+++ ++..+| +++|.+++++|.
T Consensus 632 ~rLt~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~yg 682 (692)
T 2xcs_B 632 RRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFG 682 (692)
T ss_dssp GGGSTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999997 666654 677777777665
No 6
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=100.00 E-value=4e-89 Score=845.37 Aligned_cols=365 Identities=54% Similarity=0.919 Sum_probs=322.0
Q ss_pred CCCCCChhhhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCC
Q psy7164 26 PANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKM 105 (2307)
Q Consensus 26 ~~~~~~~~~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~ 105 (2307)
..+++++|++||+|+++||||+||||||||+++.+++|||||+++|+|++|+|+|+||||||||||||||+||++++|+|
T Consensus 7 ~~~~~~~e~~~~~L~glE~VrkRPgMYIGst~~~~~~~~v~e~~~~~~~~~~v~~~~GL~~lv~EivdNaiDe~~~~g~~ 86 (418)
T 1pvg_A 7 STEPVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSM 86 (418)
T ss_dssp -----CHHHHSEECCHHHHHHHCCHHHHCCSSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CCcccchhhheeecchhHHHhhCCCceEcccCCCcceeeeeeccccccccccccccchHHHHHHHHHhCHHHHHHhcCCC
Confidence 34668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCccc
Q psy7164 106 NCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDK 185 (2307)
Q Consensus 106 ~~I~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk 185 (2307)
+.|+|+|+.|+++|+|+|||||||+++|+++|+|+||+|||+|||| ||||+++|+
T Consensus 87 ~~I~V~i~~d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaG-------------------------gKfd~~~yk 141 (418)
T 1pvg_A 87 KRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTS-------------------------SNYDDDEKK 141 (418)
T ss_dssp CEEEEEEETTTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEE-------------------------SCCCTTSCC
T ss_pred CEEEEEEECCCCEEEEEECCCcccCcccccCCcccceEEEEEEecc-------------------------cccCCCcee
Confidence 9999999997689999999999999999999999999999999999 999999999
Q ss_pred cccCCCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCCC-CCCCcEEEEEeCcccccccccCHHHH
Q psy7164 186 VTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGS-KDDFTKITFTPDLTKFKMTSLDKDMV 264 (2307)
Q Consensus 186 ~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~~-~~~GT~VtF~PD~~iF~~~~f~~d~l 264 (2307)
+||||||||+|||||||+||+|+|++.++|+.|+|.|++||.....+.++.+. +++||+|+||||++||++..|++++|
T Consensus 142 vSGGLhGVG~SvVNALS~~l~V~v~r~rdGk~y~q~f~~G~~~~~~p~i~~~~~~~tGT~V~F~PD~~iF~~~~f~~d~l 221 (418)
T 1pvg_A 142 VTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDIL 221 (418)
T ss_dssp CCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEECCSSCCEEEEEEEECGGGGTCSSCCHHHH
T ss_pred ccCCccceeeeeeeeccceEEEEEEECCCCcEEEEEEEcCCCccCCCeecccCCCCCceEEEEEEChHHcCCcccCHHHH
Confidence 99999999999999999999999986578999999999997433333455433 57999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCcEEEeccccCCccchHHHHHHHhccCCC--------------CCCCeEEEEEecCCeeEEEEee
Q psy7164 265 DLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDE--------------DGDPVKIIYENVNPRWEVAIAP 330 (2307)
Q Consensus 265 ~~l~~Rl~dlA~LnpGLkI~lnder~~~~G~~dYV~~~~~~~~~--------------~~~~~~ii~e~~~~~~EVAl~~ 330 (2307)
++|.+|++++|||||||+|+|+|+|.+.+||++||++|....+. +.+|+ +++..+.+||||++|
T Consensus 222 ~~l~~RlrelA~Ln~Gl~I~l~der~~~~g~~~~v~~y~~~l~~~k~~~~~~~~~~~~~~~~i--~~~~~~~~vevA~~~ 299 (418)
T 1pvg_A 222 GVMRRRVYDINGSVRDINVYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTI--LYERINNRWEVAFAV 299 (418)
T ss_dssp HHHHHHHHHHHHHSTTCEEEETTEECCCCSHHHHHHTTTTTC-----------------CCSC--EEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEeccccccccHHHHHHHHHHhhhcccccccccccccCCCCCCE--EEEEecceEEEEEEE
Confidence 88899999999999999999999998778999999976632222 22333 345556789999999
Q ss_pred cCCCceEEEeeCCccCCCCcchhhHHHHHHHHHHHHHHHHhccccccceeeccccccccccchhhhhccccccccccccc
Q psy7164 331 SDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGG 410 (2307)
Q Consensus 331 s~~~y~~~SFVNnI~T~eGGTHvdgfr~aLtr~i~~~~kkk~k~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~dvreg~ 410 (2307)
++..++++||||||+|++||||++||+++|+++|++|++++++
T Consensus 300 ~~~~~~~~SFvN~I~T~~GGTH~~g~~~al~~~i~~~~~k~~~------------------------------------- 342 (418)
T 1pvg_A 300 SDISFQQISFVNSIATTMGGTHVNYITDQIVKKISEILKKKKK------------------------------------- 342 (418)
T ss_dssp CSSSCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHCC----------------------------------------
T ss_pred cCCCceEEEEeCceeCCCCCcHHHHHHHHHHHHHHHHHHhccc-------------------------------------
Confidence 9855778999999999999999999999999999998865432
Q ss_pred ccCChHhHhcceEEEEEeecCCCcccchhhhhhhcccccccccc
Q psy7164 411 MALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC 454 (2307)
Q Consensus 411 ~~vk~~dIre~L~~~Vsvki~nP~FegQTKekL~~~~~~~~~k~ 454 (2307)
..++++|||+||++||||+++||+|+||||+||++....+++++
T Consensus 343 ~~l~g~Dvregl~aviSvkv~~PqFegQTK~kL~~~~~~~v~~~ 386 (418)
T 1pvg_A 343 KSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRC 386 (418)
T ss_dssp --CCHHHHHTTEEEEEEECCSSCCBSSTTCCSBCCCGGGSSSCC
T ss_pred CCCCHHHHhhCeEEEEEEecCCCcccCccchhhcCccccccccc
Confidence 34788999999999999999999999999999999877777753
No 7
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.1e-86 Score=841.90 Aligned_cols=457 Identities=44% Similarity=0.768 Sum_probs=377.6
Q ss_pred CCCCCCCChHHHHhhcChhHHHHhhchHHHHHHHHHHHhcCCCchhHHHHHHhhhccCcCCcccccccccCCCCCCCCCC
Q psy7164 1535 TKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEP 1614 (2307)
Q Consensus 1535 ~~~~~~p~Fl~~fy~~SRLHhlstwk~~~k~~~~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~r 1614 (2307)
..++.|||||++||+|||||||||||++||+||++|+++..++|++.+.++++++..+.....+.... ..+..+...|
T Consensus 11 ~~~~~~~~f~~~~~~~srlh~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~r 88 (504)
T 3gqc_A 11 PSKPSDCNFISNFYSHSRLHHISMWKCELTEFVNTLQRQSNGIFPGREKLKKMKTGRSALVVTDTGDM--SVLNSPRHQS 88 (504)
T ss_dssp ----CHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTC-----CHHHHTTCC--------------------------CC
T ss_pred CCCCCCchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhhhccccccccccccccc--ccccCCCCCc
Confidence 35677999999999999999999999999999999998777788887655554332211000000000 0011234579
Q ss_pred EEEEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCC-cccccccccchhhHHh--------------------------
Q psy7164 1615 VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSS-KVREGVDRQAEFDIYR-------------------------- 1667 (2307)
Q Consensus 1615 ~I~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s-~~~~~~~~~~~~~~~~-------------------------- 1667 (2307)
+||||||||||||||++++|+|+|+||||+|++|.+. ..+.|.+...+.++|+
T Consensus 89 ~I~HvDmd~FfaSve~~~~P~LrgkPvaV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 168 (504)
T 3gqc_A 89 CIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKILKGKAADIPDSSLWENPDSAQAN 168 (504)
T ss_dssp CEEEEEETTHHHHHHTTTCTTTTTSCEEECSSCSSCBCCCCTTBCHHHHHHHHHTTTTCC--------------------
T ss_pred EEEEEeccchhhhhhhccCccccCCCeEEEecCCCCccccccccchhhhhhhhhhhhcccccccccccccccccchhhcc
Confidence 9999999999999999999999999999999765431 0111111111122222
Q ss_pred -------hhhcccCCHHHHHcCCCCCCcHHHHHHhCCCcEEecCChhHHHHHHHHHHHHHHhcccceeecccccchhhhc
Q psy7164 1668 -------QRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLN 1740 (2307)
Q Consensus 1668 -------~~~i~scNY~AR~~GVk~GM~l~~A~kLCPdL~ivpydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafld 1740 (2307)
.+.|++|||+||++||++||++.+|++|||+|+++|+||+.|+++|.+|+++|.+|++
T Consensus 169 Gv~av~s~s~V~aaSyeAR~~GVrsGMp~~~A~~lcP~livv~~d~~~Y~~~S~~i~~il~~~tp--------------- 233 (504)
T 3gqc_A 169 GIDSVLSRAEIASCSYEARQLGIKNGMFFGHAKQLCPNLQAVPYDFHAYKEVAQTLYETLASYTH--------------- 233 (504)
T ss_dssp -CGGGBCCCBCSEECHHHHTTTCCTTCBHHHHHHHCTTCEEECCCHHHHHHHHHHHHHHHHTTCS---------------
T ss_pred ccceeccCCEEEECCHHHHHcCCCCCCcHHHHHHhCCCcEEECCCHHHHHHHHHHHHHHHHHhCC---------------
Confidence 2458999999999999999999999999999999999999999999999988876644
Q ss_pred cCcchhhhhHHhhhhhhhhhcccccCCCcccchhhhcccccccccCCCCCCcccccccccccccccccccchhhHHHHHH
Q psy7164 1741 ALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTM 1820 (2307)
Q Consensus 1741 i~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 1820 (2307)
T Consensus 234 -------------------------------------------------------------------------------- 233 (504)
T 3gqc_A 234 -------------------------------------------------------------------------------- 233 (504)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcccCCCCCChhhhhHhhhhhhhhhcccchHHHHHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceee
Q psy7164 1821 LREWMCESQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVS 1900 (2307)
Q Consensus 1821 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve 1900 (2307)
.||
T Consensus 234 -----------------------------------------------------------------------------~VE 236 (504)
T 3gqc_A 234 -----------------------------------------------------------------------------NIE 236 (504)
T ss_dssp -----------------------------------------------------------------------------CEE
T ss_pred -----------------------------------------------------------------------------eEE
Confidence 345
Q ss_pred eecCCceEEcCccchhccCCCHHHHHHHHHHHHHHHhCCeEEEEecCCHHHHHHHhhccCCCCEEEeChhhHHHHhhcCC
Q psy7164 1901 AVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIP 1980 (2307)
Q Consensus 1901 ~~SiDEaflDlt~~l~~~~~~~~~lA~~IR~~I~~~TG~tvSVGIA~NklLAKLASr~AKPnGq~~L~pe~v~~fL~~LP 1980 (2307)
++||||+|+|++++.++++.++.++|++||++|+++|||+||||||+||+|||||++++||+|+++|.++++.+||++||
T Consensus 237 ~~SiDEafLDvtg~~~l~g~~~~~la~~Ir~~I~~~tGlt~SvGIa~nk~LAKlAs~~~KP~G~~vl~~~~~~~~L~~LP 316 (504)
T 3gqc_A 237 AVSCDEALVDITEILAETKLTPDEFANAVRMEIKDQTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQL 316 (504)
T ss_dssp EEETTEEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHHHCSSCEEECCGGGHHHHHHHSB
T ss_pred EecCCeEEEeccchHhhcCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCHHHHHHHHhhCccCCEEEECHHHHHHHHhcCC
Confidence 67778888888888777766789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhCcchHHHHHHHhcCCCCCccccccCCcccEEEEecCcCCCCH
Q psy7164 1981 LSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNN 2060 (2307)
Q Consensus 1981 V~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG~k~G~~L~~~arGiD~~~V~~~~~rKSIs~e~nfg~r~~~~ 2060 (2307)
|++|||||+++.++|+.+||+||+||+++|+..|+++||..+|.+||+.|+|+|+++|.+..++|||+.+++|+.++.+.
T Consensus 317 V~~l~GIG~~t~~kL~~lGI~TigDLa~~~~~~L~~~fG~~~g~~L~~~a~GiD~~pV~~~~~~KSi~~e~tf~~d~~~~ 396 (504)
T 3gqc_A 317 VTNLPGVGHSMESKLASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGIRFTQP 396 (504)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCBHHHHTTSCHHHHHHHHCHHHHHHHHHHTTTCCCCCCCCCCCCCCEEEEECSSCCCCSH
T ss_pred hhHhhCcCHHHHHHHHHcCCCcHHHHHhccHHHHHHhhChhHHHHHHHHhcCCCccccccccCCcceeeeeccCCCCCCH
Confidence 99999999999999999999999999999999999999977899999999999999999988999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccceEEEEEEEEecCCCcccccccccCceeeeecceeccCcCChhHHHHHHHHHHhhh
Q psy7164 2061 QEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSA 2140 (2307)
Q Consensus 2061 eel~~~L~~La~eL~~RLr~~~~~~r~LTLkL~~R~~~Ap~ep~K~lGhG~cD~~skS~~Lpt~~~~~L~~aA~~lL~~i 2140 (2307)
+++..+|..||.+|+.||+++++.+++|+|+|++|..++|.++++|+|||.|+..+++..|+.+
T Consensus 397 ~~l~~~L~~La~~l~~rLr~~~~~~~~vtLkl~~r~~d~~~~t~~f~~~g~~~~~trs~tL~~p---------------- 460 (504)
T 3gqc_A 397 KEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKPGAPVETAKFGGHGICDNIARTVTLDQA---------------- 460 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECTTSCSBCSSTTCCCSEEEEEEEEEEEEE----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEEEEEEEEecccccccccccccCCCcccceeEeecCCC----------------
Confidence 9999999999999999999999999999999999999999999999999999999888887533
Q ss_pred cCCCCCceEEeeeeccccccccCCccCcchHHHHHHHHHHHHHhcCCCCccEEEeeeeccCccccccc
Q psy7164 2141 EAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSKLEHQSKT 2208 (2307)
Q Consensus 2141 ~~~~~~yr~~Gv~l~dl~skq~~L~l~t~~~~~I~~e~~~L~r~~g~~~~~lRgIGIq~skL~~~S~~ 2208 (2307)
|++...|++++..||+++..+...+|+|||++++|.+...+
T Consensus 461 ---------------------------T~d~~~I~~~A~~Ll~~~~~~~~~vRllGV~~s~L~~~~g~ 501 (504)
T 3gqc_A 461 ---------------------------TDNAKIIGKAMLNMFHTMKLNISDMRGVGIHVNQLVPTNLN 501 (504)
T ss_dssp ---------------------------ECCHHHHHHHHHHHHHTSCCCGGGEEEEEEEEEEEEECC--
T ss_pred ---------------------------cCCHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCcccCCCC
Confidence 44566788888888888877678899999999999876554
No 8
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=100.00 E-value=6.7e-86 Score=813.59 Aligned_cols=363 Identities=69% Similarity=1.134 Sum_probs=331.7
Q ss_pred ChhhhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeEEE
Q psy7164 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKI 110 (2307)
Q Consensus 31 ~~~~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I~V 110 (2307)
|+|++||+|+++||||+||||||||+++.++.|||||.+++ |++|+|+|+|||||+|+||||||+||++++|+|+.|.|
T Consensus 1 ~~~~~~~~L~glE~VrkRPgmYiGst~~~~~~~~v~~~~~~-~~~~~~~~~~GL~~lv~EivdNsiDe~~~~g~~~~I~V 79 (400)
T 1zxm_A 1 SVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRV 79 (400)
T ss_dssp CHHHHSEECCHHHHHHHCCHHHHCCCSCEEEEEEEEETTTE-EEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred ChhHhheecchHHHHHhCCCcEEccCCccccceeeeccccc-cccccccccchHHHHHHHHHhhHHhHHhhcCCCceEEE
Confidence 57899999999999999999999999999999999998888 99999999999999999999999999988999999999
Q ss_pred EEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCccccccCC
Q psy7164 111 TVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGR 190 (2307)
Q Consensus 111 ~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGl 190 (2307)
+|+.++|+|+|+|||||||+++|+++|+|++|+|||+|||| |||+++.|++|||+
T Consensus 80 ~i~~~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhag-------------------------sKf~~~~ykvSgGl 134 (400)
T 1zxm_A 80 TIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTS-------------------------SNYDDDEKKVTGGR 134 (400)
T ss_dssp EEETTTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEE-------------------------SCCCGGGCCCCSCC
T ss_pred EEECCCCEEEEEECCCcccCccccccCccchhheeeeeccc-------------------------CCCCCCcccccCCc
Confidence 99986699999999999999999999999999999999999 99999999999999
Q ss_pred CcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCCCCCCCcEEEEEeCcccccccccCHHHHHHHHHH
Q psy7164 191 NGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRR 270 (2307)
Q Consensus 191 hGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~~~~~GT~VtF~PD~~iF~~~~f~~d~l~~l~~R 270 (2307)
||||+|+|||||++|+|++++.++++.|+|.|.+|++..+.+.++.+..++||+|+|+||+++|+++.|+++++.+|.+|
T Consensus 135 hGvGlsvVnAlS~~l~v~v~~~~~g~~~~~~~~~G~~~~~~~~ig~~~~~~GT~V~F~Pd~~iF~~~ef~~~~~~~l~~r 214 (400)
T 1zxm_A 135 NGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRR 214 (400)
T ss_dssp SSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEECCSCCEEEEEEEECGGGGTCSSCCHHHHHHHHHH
T ss_pred cccceeeeEEeccceEEEEecCCCCcEEEEEEccCccccCcceeccCCCCCccEEEEEEChHHhCceeecHHHHHHHHHH
Confidence 99999999999999999998766899999999999887776666554456899999999999999889999998778899
Q ss_pred HHHhhccCCCcEEEeccccCCccchHHHHHHHhc-cCCCCCCCeEEEEEecCCeeEEEEeecCCCceEEEeeCCccCCCC
Q psy7164 271 AYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD-RQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKG 349 (2307)
Q Consensus 271 l~dlA~LnpGLkI~lnder~~~~G~~dYV~~~~~-~~~~~~~~~~ii~e~~~~~~EVAl~~s~~~y~~~SFVNnI~T~eG 349 (2307)
++++|||||||+|+|+|+|.+.+||++||++++. +...+..++.++++..+.+||||++|++++|+++||||||+|++|
T Consensus 215 lrelA~lnpgv~i~l~der~~~~Gi~~yv~~l~~~~~~~~~~~~~~~~~~~~~~~eva~~~~~~~~~~~sfvN~I~T~~G 294 (400)
T 1zxm_A 215 AYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVCLTMSEKGFQQISFVNSIATSKG 294 (400)
T ss_dssp HHHHHHHSSSCEEEETTEECCCCSHHHHHHHHHTTCBCSSSSBCCCEEEEEETTEEEEEEECSSSCEEEEEETTEECTTE
T ss_pred HHHHHhhCCCcEEEEecCCCCCCCHHHHHHHHhcCCCccCCCCcceEEeecCcEEEEEEEEcCCCceEEEEeCCccCCCC
Confidence 9999999999999999999877899999999984 223344455667777789999999999668989999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHhccccccceeeccccccccccchhhhhcccccccccccccccCChHhHhcceEEEEEee
Q psy7164 350 GRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCL 429 (2307)
Q Consensus 350 GTHvdgfr~aLtr~i~~~~kkk~k~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~dvreg~~~vk~~dIre~L~~~Vsvk 429 (2307)
|||++||++||+++||+|++++++ ....++++|||+||++||||+
T Consensus 295 GTH~~gfr~altr~i~~y~~k~~k-----------------------------------~~~~l~~~Dvregl~avisvk 339 (400)
T 1zxm_A 295 GRHVDYVADQIVTKLVDVVKKKNK-----------------------------------GGVAVKAHQVKNHMWIFVNAL 339 (400)
T ss_dssp EHHHHHHHHHHHHHHHHHHTTCC---------------------------------------CCCHHHHHTTEEEEEEEC
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcc-----------------------------------cCCCcCHHHHhhCeEEEEEEe
Confidence 999999999999999999976532 014578999999999999999
Q ss_pred cCCCcccchhhhhhhcccccccccc
Q psy7164 430 IVNPTFDSQTKENMTLQKGSFGSTC 454 (2307)
Q Consensus 430 i~nP~FegQTKekL~~~~~~~~~k~ 454 (2307)
++||+|+||||+||++....|+++|
T Consensus 340 v~~PqFegQTK~kL~~~~~~~v~~~ 364 (400)
T 1zxm_A 340 IENPTFDSQTKENMTLQPKSFGSTC 364 (400)
T ss_dssp CSSCCBSSTTCCEECCCGGGSSSCC
T ss_pred cCCCCcCcccchhhcCccccccccc
Confidence 9999999999999999888999986
No 9
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=100.00 E-value=8.7e-78 Score=755.44 Aligned_cols=407 Identities=34% Similarity=0.535 Sum_probs=352.4
Q ss_pred CCCCCCCChHHHHhhcChhHHHHhhchHHHHH-HHHHHHhcCCCchhHHHHHHhhhccCcCCcccccccccCCCCCCCCC
Q psy7164 1535 TKNASNEDFLGEFYNKSRLHHLSTMGSMFKQY-VNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPE 1613 (2307)
Q Consensus 1535 ~~~~~~p~Fl~~fy~~SRLHhlstwk~~~k~~-~~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 1613 (2307)
..+|.|||||++||+|||||||||||++|++. ++++.++. ...++...
T Consensus 3 ~~~~~~~~f~~~~~~~srlh~~~~w~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~ 51 (434)
T 2aq4_A 3 IVACDDPDFLTSYFAHSRLHHLSAWKANLKDKFLNENIHKY-------------------------------TKITDKDT 51 (434)
T ss_dssp CCCTTSTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTTSC-------------------------------CCCCSSCE
T ss_pred cccCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc-------------------------------CCCCCCCc
Confidence 46788999999999999999999999999853 33322110 00112356
Q ss_pred CEEEEEeCCcchhhhhhhcCC------CCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCC
Q psy7164 1614 PVIMHIDMDCFFVSVGIRHHP------ELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGM 1687 (2307)
Q Consensus 1614 r~I~HvDmD~FFasVe~~~~P------eL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM 1687 (2307)
|+|+||||||||||||++.+| +|+++||||+++..+ +.|++|||+||++||++||
T Consensus 52 r~i~hiD~d~FyaSvE~~~~p~~l~~~~l~~~Pv~V~~~~~~-------------------~~V~a~syeAR~~GV~~gm 112 (434)
T 2aq4_A 52 YIIFHIDFDCFFATVAYLCRSSSFSACDFKRDPIVVCHGTKN-------------------SDIASCNYVARSYGIKNGM 112 (434)
T ss_dssp EEEEEEEETTTTHHHHHHTCCGGGTTCCTTTSCEEECSCSSS-------------------CBCSEECHHHHHTTCCTTC
T ss_pred eEEEEEecCcHHHHHHHHHcCcccccccccCCcEEEEecCCC-------------------CeEEEcCHHHHHcCCCCCC
Confidence 999999999999999999999 999999999974211 2367999999999999999
Q ss_pred cHHHHHHhCCC---cEEecCChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccc
Q psy7164 1688 FVGHALKKCPN---LKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSRE 1764 (2307)
Q Consensus 1688 ~l~~A~kLCPd---L~ivpydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~ 1764 (2307)
++.+|+++||+ |+++|+||+.|+++|++|++++.+|+
T Consensus 113 ~~~~A~~lcP~~~~lvv~~~~~~~Y~~~S~~i~~il~~~~---------------------------------------- 152 (434)
T 2aq4_A 113 WVSQAEKMLPNGIKLISLPYTFEQFQLKSEAFYSTLKRLN---------------------------------------- 152 (434)
T ss_dssp BHHHHHTTCCTTCCCEEECCCHHHHHHHHHHHHHHHHHTT----------------------------------------
T ss_pred cHHHHHHhCCCCCCEEEECCChHHHHHHHHHHHHHHHhcC----------------------------------------
Confidence 99999999999 99999999999999999999888762
Q ss_pred cCCCcccchhhhcccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhh
Q psy7164 1765 QNTTEPLAQDIICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSN 1844 (2307)
Q Consensus 1765 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~ 1844 (2307)
T Consensus 153 -------------------------------------------------------------------------------- 152 (434)
T 2aq4_A 153 -------------------------------------------------------------------------------- 152 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcccchHHHHHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEc--CccchhccCCCH
Q psy7164 1845 LVEERHLNPIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVD--CSQLLQELSLTP 1922 (2307)
Q Consensus 1845 ~~~~~~~~~~~~~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflD--lt~~l~~~~~~~ 1922 (2307)
++|.||++||||+|+| +++..+.+..++
T Consensus 153 --------------------------------------------------~t~~ve~~SiDEaflD~~vt~~~~~~~~~~ 182 (434)
T 2aq4_A 153 --------------------------------------------------IFNLILPISIDEAVCVRIIPDNIHNTNTLN 182 (434)
T ss_dssp --------------------------------------------------CCSEEEEEETTEEEEEEEECC------CHH
T ss_pred --------------------------------------------------CCCCEEEEcCceeEEcCcCccchhhcCCCH
Confidence 0345667777888888 777665543478
Q ss_pred HHHHHHHHHHHHHHh-CCeEEEEecCCHHHHHHHhhccCCCCEEEeChhhH-HHHhhcCCCCCCCCCChhHHHHHHh--c
Q psy7164 1923 LQFASYLRETIAKET-GCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQII-SDFMLNIPLSDLPGVGHSLLFKLNS--L 1998 (2307)
Q Consensus 1923 ~~lA~~IR~~I~~~T-G~tvSVGIA~NklLAKLASr~AKPnGq~~L~pe~v-~~fL~~LPV~dLpGIG~~~~~kL~~--l 1998 (2307)
.++|++||++|+++| ||+||||||+||+|||||++.+||+|++++.++++ .+||+++||++|||||+++.++|++ +
T Consensus 183 ~~la~~Ir~~I~~~~gGlt~svGIa~nk~lAKlAs~~aKp~G~~~l~~~~~~~~~l~~lpv~~l~GiG~~~~~~L~~~~~ 262 (434)
T 2aq4_A 183 ARLCEEIRQEIFQGTNGCTVSIGCSDSLVLARLALKMAKPNGYNITFKSNLSEEFWSSFKLDDLPGVGHSTLSRLESTFD 262 (434)
T ss_dssp HHHHHHHHHHHHHHHSSCCEEEEEESSHHHHHHHHHHHCSSCEECCCGGGCCHHHHTTCCGGGSTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHhcCCCCCEEEECChhhHHHHhhcCCcccccCcCHHHHHHHHHhcC
Confidence 899999999999999 89999999999999999999999999999999887 7999999999999999999999999 8
Q ss_pred CCccchhhhcC-CHHHHHhhhCcchHHHHHHHhcCCCCCccc-----cc--cCCcccEEEEecCcCCCCHHHHHHHHHHH
Q psy7164 1999 GAQTCGDLQNI-SLKRLQNEVGNKNGLTLYKHCRGEDDKELT-----FE--HQRKSVSAEVNYGIRFQNNQEMETFLKQL 2070 (2307)
Q Consensus 1999 GI~TigDL~~l-p~~~L~~~fG~k~G~~L~~~arGiD~~~V~-----~~--~~rKSIs~e~nfg~r~~~~eel~~~L~~L 2070 (2307)
||+|++||+++ |+..|+++||.+.|.++|++|+|+|++++. +. .++|||+++++|+.++.+.+++..+|..|
T Consensus 263 GI~ti~dL~~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~~~~~~~~~~ksi~~~~tf~~~~~~~~~l~~~l~~l 342 (434)
T 2aq4_A 263 SPHSLNDLRKRYTLDALKASVGSKLGMKIHLALQGQDDEESLKILYDPKEVLQRKSLSIDINWGIRFKNITQVDLFIERG 342 (434)
T ss_dssp CCCSHHHHHHHCCHHHHHHHHCSSHHHHHHHHTTTCCCHHHHHHHHCHHHHHSCCCEEEEECSSCCCSSHHHHHHHHHHH
T ss_pred CceEHHHHHhcCCHHHHHHHhCHHHHHHHHHHhcCCCcccccccccCcccCCCCceeEEEEECCCCCCCHHHHHHHHHHH
Confidence 99999999999 999999999977999999999999999985 32 47999999999999999999999999999
Q ss_pred HHHHHHHHHhccccceEEEEEEEEecCCCcccccccccCceeeeecceeccCcCChhHHHHHHHHHHhhhcCCCCCceEE
Q psy7164 2071 AGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFL 2150 (2307)
Q Consensus 2071 a~eL~~RLr~~~~~~r~LTLkL~~R~~~Ap~ep~K~lGhG~cD~~skS~~Lpt~~~~~L~~aA~~lL~~i~~~~~~yr~~ 2150 (2307)
|.+|+.||+++++.+++|+|+|++|+.++|.+++||+|||.|+..+++..++.+
T Consensus 343 ~~~l~~rLr~~~~~~~~v~l~l~~r~~~~~~~~~ky~g~gd~~~~s~s~~l~~p-------------------------- 396 (434)
T 2aq4_A 343 CQYLLEKLNEINKTTSQITLKLMRRCKDAPIEPPKYMGMGRCDSFSRSSRLGIP-------------------------- 396 (434)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEEECTTSCSSCSSTTCCCSEEEEEEEEEEEEE--------------------------
T ss_pred HHHHHHHHHHcCCcceEEEEEEEEecCCCCcccccccCCCCcccceEEeecCCC--------------------------
Confidence 999999999999999999999999998899999999999999999888887532
Q ss_pred eeeeccccccccCCccCcchHHHHHHHHHHHHHhcCCCCccEEEeeeeccCccc
Q psy7164 2151 GHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSKLEH 2204 (2307)
Q Consensus 2151 Gv~l~dl~skq~~L~l~t~~~~~I~~e~~~L~r~~g~~~~~lRgIGIq~skL~~ 2204 (2307)
+++...|++.+..||+++..++..+|+|||++++|++
T Consensus 397 -----------------t~~~~~i~~~a~~ll~~~~~~~~~vR~lgv~~s~l~~ 433 (434)
T 2aq4_A 397 -----------------TNEFGIIATEMKSLYRTLGCPPMELRGLALQFNKLVD 433 (434)
T ss_dssp -----------------ECCHHHHHHHHHHHHHHHTCCGGGEEEEEEEEEEEEE
T ss_pred -----------------cCCHHHHHHHHHHHHHHhcCCCCCEEEEEEEEeCccc
Confidence 3445667777888888876666789999999988864
No 10
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=100.00 E-value=5.3e-76 Score=722.89 Aligned_cols=327 Identities=20% Similarity=0.279 Sum_probs=256.6
Q ss_pred CCCChhhhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCe
Q psy7164 28 NKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNC 107 (2307)
Q Consensus 28 ~~~~~~~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~ 107 (2307)
..++. ..||+|+|+||||+||||||||+++ ||||+||||||+||++ +|+|+.
T Consensus 22 ~~Y~a-~~I~vL~glE~VRkRPgMYiGst~~--------------------------~hlv~EivdNsiDea~-ag~~~~ 73 (408)
T 3lnu_A 22 TRYNA-ADIEVLSGLDPVKRRPGMYTDTARP--------------------------NHLAQEVIDNSVDEAL-AGHAKQ 73 (408)
T ss_dssp -------------CCHHHHHCGGGTSCTTST--------------------------HHHHHHHHHHHHHHHH-TTSCCE
T ss_pred CCcCH-hHceeccccHHHhcCCccEECCCCc--------------------------chhhHHHHHHHHHHhh-cCCCce
Confidence 34666 5789999999999999999999862 8999999999999998 579999
Q ss_pred EEEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCccccc
Q psy7164 108 IKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVT 187 (2307)
Q Consensus 108 I~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~s 187 (2307)
|.|+|+. ||+|+|+|||||||+++||++|+|++|+|||+|||| ||||++.|++|
T Consensus 74 I~V~i~~-dgsI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhag-------------------------gKfd~~~ykvS 127 (408)
T 3lnu_A 74 IEVTLYK-DGSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAG-------------------------GKFNNRNYTFS 127 (408)
T ss_dssp EEEEECT-TSCEEEEECSSCCCCSBCTTTCSBHHHHHHHCC---------------------------------------
T ss_pred EEEEEeC-CCeEEEEEcCCCCCcccccccCCcchheEEEecccC-------------------------CCcCCCceeec
Confidence 9999987 589999999999999999999999999999999999 99999999999
Q ss_pred cCCCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCCC-CCCCcEEEEEeCcccccccccCHHHHHH
Q psy7164 188 GGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGS-KDDFTKITFTPDLTKFKMTSLDKDMVDL 266 (2307)
Q Consensus 188 gGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~~-~~~GT~VtF~PD~~iF~~~~f~~d~l~~ 266 (2307)
||+||||+|||||||+||+|+|++ +|+.|+|.|.+|++..+..+++.+. .++||+|+|+||+++|++..|++++|.
T Consensus 128 gGlhGvG~svVNALS~~l~v~v~r--dGk~~~q~f~~G~~~~~l~~ig~~~~~~~GT~V~F~PD~~iF~~~~f~~~~l~- 204 (408)
T 3lnu_A 128 GGLHGVGVSVVNALSTKVELFIKR--EGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADPKYFDTPKFNVRALR- 204 (408)
T ss_dssp ------CHHHHHHTEEEEEEEEEE--TTEEEEEEEETTEECSCCEEEEECCTTCCEEEEEEEECGGGSSCSCCCHHHHH-
T ss_pred CCccccccceehhccCeEEEEEEE--CCEEEEEEECCCEECCCceEeccCcCCCCCcEEEEEECHHHhCCCCcCHHHHH-
Confidence 999999999999999999999974 8999999999999877666666553 589999999999999999999999986
Q ss_pred HHHHHHHhhccCCCcEEEeccccCCc-------cchHHHHHHHhccCCCCCCCeEEEEEecC-CeeEEEEeecCC-CceE
Q psy7164 267 ITRRAYDAAASTKDVKVFLNGEKLPV-------KNFQDYVKLYTDRQDEDGDPVKIIYENVN-PRWEVAIAPSDR-GFQQ 337 (2307)
Q Consensus 267 l~~Rl~dlA~LnpGLkI~lnder~~~-------~G~~dYV~~~~~~~~~~~~~~~ii~e~~~-~~~EVAl~~s~~-~y~~ 337 (2307)
+|++++|||||||+|+|+|+|.+. +||++||++++........++.+..+.++ +.+||||||++. ++++
T Consensus 205 --~rlrelA~Ln~Gv~I~l~der~~~~~~f~yegGi~~yv~~l~~~k~~~~~~~~~~~~~~~~~~ve~Al~~~~~~~e~~ 282 (408)
T 3lnu_A 205 --HLLRAKAVLCPGLTVKLHDEATGEQDSWYFENGLRDYLKGEMAEHEMLPADLFVGSLKKDTEIVDWAAGWVPEGELVQ 282 (408)
T ss_dssp --HHHHHHHHHSTTCEEEEEETTTCCEEEEECSSSHHHHHHHHTTTSCCEEEEEEEEEEECSSCEEEEEEEECSSSCCCE
T ss_pred --HHHHHHHhhcCCCEEEEEeccCCceeEEEcCchHHHHHHHHhcCCCcCCCCCeEeeEecCceeEEEEEEEcCCCCeEE
Confidence 899999999999999999998642 59999999987432111011111123455 889999999973 2347
Q ss_pred EEeeCCccCCCCcchhhHHHHHHHHHHHHHHHHhccccccceeeccccccccccchhhhhcccccccccccccccCChHh
Q psy7164 338 VSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQ 417 (2307)
Q Consensus 338 ~SFVNnI~T~eGGTHvdgfr~aLtr~i~~~~kkk~k~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~dvreg~~~vk~~d 417 (2307)
+||||||+|++||||++||++||+++||+|++++++ +|+ +..++++|
T Consensus 283 ~SFvN~I~T~~GGTH~~gfr~altr~in~y~~~~~l----------------~kk-----------------~~~l~~~D 329 (408)
T 3lnu_A 283 ESYVNLIPTAQHGTHVNGLRSGLTDALREFCDFRNL----------------LPR-----------------GVKLAPED 329 (408)
T ss_dssp EEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTC----------------CCT-----------------TCCCCHHH
T ss_pred EEEeCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhCc----------------ccC-----------------CCCCCHHH
Confidence 999999999999999999999999999999987754 222 14688999
Q ss_pred HhcceEEEEEeecCCCcccchhhhhhhcc
Q psy7164 418 VKNHIWIFINCLIVNPTFDSQTKENMTLQ 446 (2307)
Q Consensus 418 Ire~L~~~Vsvki~nP~FegQTKekL~~~ 446 (2307)
||+||++||||+|+||+|+||||+||++.
T Consensus 330 iregL~aviSvkv~~PqFegQTK~kL~n~ 358 (408)
T 3lnu_A 330 VWDRVTFVLSLKMTDPQFSGQTKERLSSR 358 (408)
T ss_dssp HHTTEEEEEEEECSSCCEESTTSCEECCH
T ss_pred HhhCeEEEEEEEcCCCcccCcccccccCH
Confidence 99999999999999999999999999863
No 11
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=7e-71 Score=680.33 Aligned_cols=329 Identities=21% Similarity=0.330 Sum_probs=288.2
Q ss_pred CCChhhhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeE
Q psy7164 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCI 108 (2307)
Q Consensus 29 ~~~~~~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I 108 (2307)
.++. +.||+|+++||||+||||||||+++ .+||+|+|+|||+||+||++ +|+|+.|
T Consensus 3 ~y~~-~~i~~L~gle~vrkRPgmYiGst~~----------------------~~gl~~lv~ElvdNsiDea~-~g~a~~I 58 (391)
T 1ei1_A 3 SSDS-SSIKVLKGLDAVRKRPGMYIGDTDD----------------------GTGLHHMVFEVVDNAIDEAL-AGHCKEI 58 (391)
T ss_dssp CCSG-GGCEECCTTHHHHHCTHHHHCCSSS----------------------SHHHHHHHHHHHHHHHHHHH-TTCCCEE
T ss_pred CCCH-HHCEECchhHHHHcCCCeEECCCCC----------------------CcCHHHHHHHHHHhHHHHHh-cCCCCEE
Confidence 3555 4889999999999999999999986 14999999999999999998 4899999
Q ss_pred EEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCcccccc
Q psy7164 109 KITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTG 188 (2307)
Q Consensus 109 ~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sg 188 (2307)
.|+|+. +|+|+|+|||||||+++|+++|+|++|+||++||+| |||+++.|++||
T Consensus 59 ~V~i~~-~g~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhag-------------------------sKf~~~~~~vSg 112 (391)
T 1ei1_A 59 IVTIHA-DNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAG-------------------------GKFDDNSYKVSG 112 (391)
T ss_dssp EEEECT-TSCEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEE-------------------------SCSSSSSCSSCS
T ss_pred EEEEeC-CCEEEEEECCCCcccCcccccCcchHHHhheecccc-------------------------CCcCCCcccccC
Confidence 999998 589999999999999999999999999999999999 999999999999
Q ss_pred CCCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCCCCCCCcEEEEEeCcccccc-cccCHHHHHHH
Q psy7164 189 GRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKM-TSLDKDMVDLI 267 (2307)
Q Consensus 189 GlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~~~~~GT~VtF~PD~~iF~~-~~f~~d~l~~l 267 (2307)
|+||+|+++|||||++|+|++++ +|+.|+|.|.+|++..+..+++. ...+||+|+|+||+++|++ ..|++++|.
T Consensus 113 Gl~GvGls~vnalS~~l~v~~~r--~g~~~~~~~~~G~~~~~l~~~~~-~~~~GT~V~f~Pd~~~F~~~~~~e~~~l~-- 187 (391)
T 1ei1_A 113 GLHGVGVSVVNALSQKLELVIQR--EGKIHRQIYEHGVPQAPLAVTGE-TEKTGTMVRFWPSLETFTNVTEFEYEILA-- 187 (391)
T ss_dssp CCSSCHHHHHHHTEEEEEEEEEE--TTEEEEEEEETTEESSCCEEEEE-CSCCEEEEEEEECTTTCCSCCSCCHHHHH--
T ss_pred CccccchHHHHHhcCeEEEEEEe--CCcEEEEEEcCCcccccceeccC-cCCCccEEEEEEChhhhCCccccCHHHHH--
Confidence 99999999999999999999974 78999999999987544433433 3679999999999999988 899999875
Q ss_pred HHHHHHhhccCCCcEEEeccccCCc-------cchHHHHHHHhccC-CCCCCCeEEEEEecCCeeEEEEeecCCCce--E
Q psy7164 268 TRRAYDAAASTKDVKVFLNGEKLPV-------KNFQDYVKLYTDRQ-DEDGDPVKIIYENVNPRWEVAIAPSDRGFQ--Q 337 (2307)
Q Consensus 268 ~~Rl~dlA~LnpGLkI~lnder~~~-------~G~~dYV~~~~~~~-~~~~~~~~ii~e~~~~~~EVAl~~s~~~y~--~ 337 (2307)
+|++++|||||||+|+|+|++.+. +|+++||.+++... ..+.+++++..+.++..||+|++|++ +|. +
T Consensus 188 -~rlr~lA~lnpgv~i~l~d~~~~~~~~f~~~gGl~~~v~~l~~~~~~~~~~~i~~~~~~~~i~veva~~~~~-~~~e~~ 265 (391)
T 1ei1_A 188 -KRLRELSFLDSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWND-GFQENI 265 (391)
T ss_dssp -HHHHHHHHHSTTCEEEEEETTTCCEEEECCCSHHHHHHHHHHHTSCBSSSCCEEEEEEETTEEEEEEEEEBS-SCCEEE
T ss_pred -HHHHHhcccCCCcEEEEEcCCCcceEEEEcCchHHHHHHHHcCCCcccccccEEEEEecCCEEEEEEEEccC-CCCeeE
Confidence 999999999999999999998432 48999999987432 23445666656667789999999986 664 5
Q ss_pred EEeeCCccCCCCcchhhHHHHHHHHHHHHHHHHhccccccceeeccccccccccchhhhhcccccccccccccccCChHh
Q psy7164 338 VSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQ 417 (2307)
Q Consensus 338 ~SFVNnI~T~eGGTHvdgfr~aLtr~i~~~~kkk~k~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~dvreg~~~vk~~d 417 (2307)
+||||+|+|.+||||++||++||+++|++|+++++. +|+. ...++++|
T Consensus 266 ~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~l----------------~k~~----------------~~~~~~~d 313 (391)
T 1ei1_A 266 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGY----------------SKKA----------------KVSATGDD 313 (391)
T ss_dssp EEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTH----------------HHHH----------------CCCCCHHH
T ss_pred EEEEcceecCCCCcHHHHHHHHHHHHHHHHHHHhCc----------------cccc----------------CCccCHHH
Confidence 999999999999999999999999999999987653 2221 14588999
Q ss_pred HhcceEEEEEeecCCCcccchhhhhhhcc
Q psy7164 418 VKNHIWIFINCLIVNPTFDSQTKENMTLQ 446 (2307)
Q Consensus 418 Ire~L~~~Vsvki~nP~FegQTKekL~~~ 446 (2307)
||+||++||||+++||+|+||||+||++.
T Consensus 314 vregl~avisvki~~P~FegQTK~kL~~~ 342 (391)
T 1ei1_A 314 AREGLIAVVSVKVPDPKFSSQTKDKLVSS 342 (391)
T ss_dssp HTTTEEEEEEEECSSCCBSSTTCCSBCCH
T ss_pred HhhccEEEEEEecCCCCcCCcccccccCH
Confidence 99999999999999999999999999863
No 12
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=1.2e-68 Score=660.94 Aligned_cols=324 Identities=18% Similarity=0.291 Sum_probs=281.7
Q ss_pred CChhhhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeEE
Q psy7164 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIK 109 (2307)
Q Consensus 30 ~~~~~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I~ 109 (2307)
++. +.||+|+++||||+||||||||+++ +|+++|||+||+||++ +|+|+.|.
T Consensus 5 y~~-~~i~~L~gle~vr~RPgmYiGs~~~--------------------------~~lv~ElvdNsiD~a~-~g~a~~I~ 56 (390)
T 1s16_A 5 YNA-DAIEVLTGLEPVRRRPGMYTDTTRP--------------------------NHLGQEVIDNSVDEAL-AGHAKRVD 56 (390)
T ss_dssp CSG-GGCEECCTTHHHHHCGGGTSCTTST--------------------------HHHHHHHHHHHHHHHH-TTCCSEEE
T ss_pred CCH-HHcEEcchhHHHhhCCceeecCCcH--------------------------HHHHHHHHHHHHHHHh-cCCCCEEE
Confidence 555 5889999999999999999999972 7899999999999998 79999999
Q ss_pred EEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCccccccC
Q psy7164 110 ITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGG 189 (2307)
Q Consensus 110 V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgG 189 (2307)
|+|+. +|+|+|+|||||||+++|+++|+|++|+||++||+| |||+++.|++|||
T Consensus 57 V~i~~-~g~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhag-------------------------sKf~~~~~~~sgG 110 (390)
T 1s16_A 57 VILHA-DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAG-------------------------GKFSNKNYQFSGG 110 (390)
T ss_dssp EEECT-TSCEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEE-------------------------SCSSSSSCSSCSC
T ss_pred EEEec-CCEEEEEECCCCcCcccccccCcchhhheeeeeccc-------------------------CCcCCCcccccCC
Confidence 99997 489999999999999999999999999999999998 9999999999999
Q ss_pred CCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCCC-CCCCcEEEEEeCcccccccccCHHHHHHHH
Q psy7164 190 RNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGS-KDDFTKITFTPDLTKFKMTSLDKDMVDLIT 268 (2307)
Q Consensus 190 lhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~~-~~~GT~VtF~PD~~iF~~~~f~~d~l~~l~ 268 (2307)
+||+|+++|||||++|+|++++ +|+.|+|.|.+|++..+...++.+. ..+||+|+|+||+++|++..|+++.|.
T Consensus 111 l~GvGls~vnalS~~l~v~~~r--~g~~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~Pd~~~F~~~~~e~~~l~--- 185 (390)
T 1s16_A 111 LHGVGISVVNALSKRVEVNVRR--DGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLT--- 185 (390)
T ss_dssp CSSCHHHHHHHTEEEEEEEEEE--TTEEEEEEEETTEEEEEEEEEEECCTTCCEEEEEEEECGGGSSCCSCCHHHHH---
T ss_pred ccccchHHHHHhhcccEEEEEE--CCcEEEEEEeCCcccccceecccccCCCCceEEEEEECccccCcccccHHHHH---
Confidence 9999999999999999999974 7899999999997644343444332 279999999999999988899999875
Q ss_pred HHHHHhhccCCCcEEEeccccCC-------ccchHHHHHHHhccCC-CCCCCeEEEEEecCCeeEEEEee-cCCCc--eE
Q psy7164 269 RRAYDAAASTKDVKVFLNGEKLP-------VKNFQDYVKLYTDRQD-EDGDPVKIIYENVNPRWEVAIAP-SDRGF--QQ 337 (2307)
Q Consensus 269 ~Rl~dlA~LnpGLkI~lnder~~-------~~G~~dYV~~~~~~~~-~~~~~~~ii~e~~~~~~EVAl~~-s~~~y--~~ 337 (2307)
+|++++|+|||||+|+|+|++.+ .+||++||.+++.... .+.+++++..+.++..||+|++| ++ +| ++
T Consensus 186 ~rl~~lA~lnpgv~i~l~d~~~~~~~~f~~~gGl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~ve~a~~~~~~-~~~~~~ 264 (390)
T 1s16_A 186 HVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPE-GGELLT 264 (390)
T ss_dssp HHHHHHHHHSTTCEEEEEETTTTEEEEECCSSCHHHHHHHHHTTSCCEEEEEEEEEEECSSEEEEEEEEECTT-CCCCCE
T ss_pred HHHHHHHhcCCCcEEEEEeCCCceeEEEEcCCcHHHHHHHHhCCCcccCCCcEEEEEeeCCEEEEEEEEeccC-CCCceE
Confidence 99999999999999999999842 2689999999874321 22233444445567899999999 65 55 57
Q ss_pred EEeeCCccCCCCcchhhHHHHHHHHHHHHHHHHhccccccceeeccccccccccchhhhhcccccccccccccccCChHh
Q psy7164 338 VSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQ 417 (2307)
Q Consensus 338 ~SFVNnI~T~eGGTHvdgfr~aLtr~i~~~~kkk~k~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~dvreg~~~vk~~d 417 (2307)
+||||+|+|.+||||++||++||+++|++|+++++. +| . ...++++|
T Consensus 265 ~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~~----------------~k-~----------------~~~l~~~d 311 (390)
T 1s16_A 265 ESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNI----------------LP-R----------------GVKLSAED 311 (390)
T ss_dssp EEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTC----------------SC-T----------------TCCCCHHH
T ss_pred EEEECCEecCCCCCHHHHHHHHHHHHHHHHHHHhCc----------------Cc-c----------------CCccCHHH
Confidence 999999999999999999999999999999998764 22 1 14578999
Q ss_pred HhcceEEEEEeecCCCcccchhhhhhhcc
Q psy7164 418 VKNHIWIFINCLIVNPTFDSQTKENMTLQ 446 (2307)
Q Consensus 418 Ire~L~~~Vsvki~nP~FegQTKekL~~~ 446 (2307)
||+||++||||+++||+|+||||+||++.
T Consensus 312 vregl~avisvki~~P~FegQTK~kL~~~ 340 (390)
T 1s16_A 312 IWDRCAYVLSVKMQDPQFAGQTKERLSSR 340 (390)
T ss_dssp HHTTEEEEEEEEESSCCBSSTTCCCBCCT
T ss_pred HhhccEEEEEeecCCCCccccccchhcCh
Confidence 99999999999999999999999999874
No 13
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=100.00 E-value=3.7e-63 Score=608.10 Aligned_cols=347 Identities=21% Similarity=0.335 Sum_probs=302.4
Q ss_pred CEEEEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHHHHH
Q psy7164 1614 PVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHAL 1693 (2307)
Q Consensus 1614 r~I~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~~A~ 1693 (2307)
|+|+||||||||||||++.+|+|+++||||++..+..+ .+ +.|++|||+||++||++||++.+|+
T Consensus 1 r~i~hiD~d~FyasvE~~~~p~l~~~Pv~V~~~~~~~~--~~-------------g~V~a~syeAr~~GV~~gm~~~~A~ 65 (352)
T 1jx4_A 1 MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFE--DS-------------GAVATANYEARKFGVKAGIPIVEAK 65 (352)
T ss_dssp CCEEEEEETTHHHHHHHHHCGGGTTSCEEEEEECSSST--TC-------------EEEEEECHHHHTTTCCTTSBHHHHH
T ss_pred CEEEEEecCcHHHHHHhHhCccccCCcEEEEeCCCCCC--CC-------------eEEEECCHHHHHcCCCCCCcHHHHH
Confidence 68999999999999999999999999999996311000 01 3477899999999999999999999
Q ss_pred HhCCCcEEecCChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCcccch
Q psy7164 1694 KKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQ 1773 (2307)
Q Consensus 1694 kLCPdL~ivpydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~~~ 1773 (2307)
++||+|+++|+||+.|+++|++|++++.+|+|.
T Consensus 66 ~lcP~l~~~~~~~~~Y~~~s~~i~~il~~~tp~----------------------------------------------- 98 (352)
T 1jx4_A 66 KILPNAVYLPMRKEVYQQVSSRIMNLLREYSEK----------------------------------------------- 98 (352)
T ss_dssp HHCTTSEEEECCHHHHHHHHHHHHHHHTTTCSC-----------------------------------------------
T ss_pred HHCCCeEEECCCHHHHHHHHHHHHHHHHHhCCC-----------------------------------------------
Confidence 999999999999999999999999888766543
Q ss_pred hhhcccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhcccch
Q psy7164 1774 DIICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLNP 1853 (2307)
Q Consensus 1774 ~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~ 1853 (2307)
T Consensus 99 -------------------------------------------------------------------------------- 98 (352)
T 1jx4_A 99 -------------------------------------------------------------------------------- 98 (352)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchhccCCCHHHHHHHHHHHH
Q psy7164 1854 IVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETI 1933 (2307)
Q Consensus 1854 ~~~~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~~~~~~~~~lA~~IR~~I 1933 (2307)
||++|+||+|+|+|++.++++ ++.++|++||++|
T Consensus 99 ---------------------------------------------ve~~SiDE~~lDvt~~~~~~~-~~~~~a~~ir~~i 132 (352)
T 1jx4_A 99 ---------------------------------------------IEIASIDEAYLDISDKVRDYR-EAYNLGLEIKNKI 132 (352)
T ss_dssp ---------------------------------------------EEEEETTEEEEECTTTCSSHH-HHHHHHHHHHHHH
T ss_pred ---------------------------------------------eEEecCceEEEeccCcccccc-cHHHHHHHHHHHH
Confidence 455666777777777666554 6789999999999
Q ss_pred HHHhCCeEEEEecCCHHHHHHHhhccCCCCEEEeChhhHHHHhhcCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHH
Q psy7164 1934 AKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKR 2013 (2307)
Q Consensus 1934 ~~~TG~tvSVGIA~NklLAKLASr~AKPnGq~~L~pe~v~~fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~ 2013 (2307)
+++|||+||||||+||++||||++.+||+|++++.++++.+||+++||++|||||+++.++|+.+||+|++||+++|+..
T Consensus 133 ~~~~Gl~~svGia~nk~lAKlAs~~~Kp~g~~~~~~~~~~~~L~~lpv~~l~GiG~~~~~~L~~~Gi~t~~dL~~~~~~~ 212 (352)
T 1jx4_A 133 LEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDK 212 (352)
T ss_dssp HHHHCCCEEEEEESSHHHHHHHHHHHCSSCEEECCHHHHHHHHHHSBGGGSTTCCHHHHHHHHTTTCCBGGGGGSSCHHH
T ss_pred HHHHCCcEEEEEcCCHHHHHHHhccCCCCCEEEECHHHHHHHHHhCCCCcccccCHHHHHHHHHcCCchHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCcchHHHHHHHhcCCCCCccccccCCcccEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhccccceEEEEEEE
Q psy7164 2014 LQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLM 2093 (2307)
Q Consensus 2014 L~~~fG~k~G~~L~~~arGiD~~~V~~~~~rKSIs~e~nfg~r~~~~eel~~~L~~La~eL~~RLr~~~~~~r~LTLkL~ 2093 (2307)
|.++||..+|.++|++|+|+|++++.+.. +|||+++.+|+.++.+.+++..+|..|+.+|+.||+++ .+++|+|+++
T Consensus 213 L~~~fG~~~g~~l~~~a~G~d~~~v~~~~-~ksi~~~~tf~~~~~~~~~l~~~l~~l~~~l~~rL~~~--~~~~v~l~l~ 289 (352)
T 1jx4_A 213 LKGMIGEAKAKYLISLARDEYNEPIRTRV-RKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKR--IPKAIHVVAV 289 (352)
T ss_dssp HHHHHCHHHHHHHHHHHTTCCCCCCCCCC-CCEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHTTC--CEEEEEEEEE
T ss_pred HHHhcChhHHHHHHHHhCCCCCCCccCCC-CceEEeeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHh--cCCEEEEEEE
Confidence 99999954499999999999999999888 99999999999999999999999999999999999999 8999999999
Q ss_pred EecCCCcccccccccCceeeeecceecc--CcCChhHHHHHHHHHHhhhcC-CCCCceEEeeeeccccccccCCccC
Q psy7164 2094 VRSAEAPREASKFLGHGVCDYITKSSSL--PIYERPLIITYFLLLVRSAEA-PREASKFLGHGVCDYITKSSSLPMY 2167 (2307)
Q Consensus 2094 ~R~~~Ap~ep~K~lGhG~cD~~skS~~L--pt~~~~~L~~aA~~lL~~i~~-~~~~yr~~Gv~l~dl~skq~~L~l~ 2167 (2307)
+..+ +..+++..+ |+.+...|.+ +..++++++. ++.+++.+|+.+.++.+...++++|
T Consensus 290 ~~~~---------------~~~~~~~~l~~pt~~~~~l~~-a~~ll~~~~~~~~~~vr~lgv~~~~l~~~~~q~~LF 350 (352)
T 1jx4_A 290 TEDL---------------DIVSRGRTFPHGISKETAYSE-SVKLLQKILEEDERKIRRIGVRFSKFIEAIGLDKFF 350 (352)
T ss_dssp ETTS---------------CEEEEEEECSSCCCHHHHHHH-HHHHHHHHHHHCCSCEEEEEEEEEEEC---------
T ss_pred ECCC---------------CcceeEEecCCCCCCHHHHHH-HHHHHHHHHhcCCCCEEEEEEEEeCCCCcccccccc
Confidence 8432 234566666 6677789999 9999999987 7889999999998876654444443
No 14
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=6.3e-64 Score=619.77 Aligned_cols=324 Identities=23% Similarity=0.314 Sum_probs=283.6
Q ss_pred hhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeEEEEEE
Q psy7164 34 KIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVN 113 (2307)
Q Consensus 34 ~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~ 113 (2307)
+.||+|+++||||+||+|||||++. +|++++++|+|+||+||+++ ++++.|.|+++
T Consensus 6 ~~i~~l~~le~vr~rpgmyiGs~~~-----------------------~g~~~~v~Elv~N~iD~a~~-~~~~~I~V~i~ 61 (390)
T 1kij_A 6 SAIRVLKGLEGVRHRPAMYIGGTGV-----------------------EGYHHLFKEILDNAVDEALA-GYATEILVRLN 61 (390)
T ss_dssp -CCEECCTTHHHHHCTHHHHSCSSH-----------------------HHHHHHHHHHHHHHHHHHHT-TSCCEEEEEEC
T ss_pred HHCEEcchhHHHhcCCCcEEccCCc-----------------------chHHHHHHHHHHHHHHHhhh-CCCCEEEEEEE
Confidence 5789999999999999999999974 79999999999999999985 78999999998
Q ss_pred ccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCccccccCCCcc
Q psy7164 114 QETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGY 193 (2307)
Q Consensus 114 ~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGV 193 (2307)
.+ ++|+|+|||+|||++.++.+|+|++|+||+.+|+| +||+++.|++++|+||+
T Consensus 62 ~~-~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~-------------------------~kf~~~~~~~s~G~~G~ 115 (390)
T 1kij_A 62 ED-GSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSG-------------------------GKFEQGAYKVSGGLHGV 115 (390)
T ss_dssp TT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEE-------------------------SGGGGSSCCCCSCSSTT
T ss_pred cC-CEEEEEEcCCCCCHHHhhhccccchhhheeeeeec-------------------------ccccCccccccCCCCCc
Confidence 74 79999999999999999999999999999999988 88988889999999999
Q ss_pred cccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCCC-CCCCcEEEEEeCcccccccccCHHHHHHHHHHHH
Q psy7164 194 GAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGS-KDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAY 272 (2307)
Q Consensus 194 GasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~~-~~~GT~VtF~PD~~iF~~~~f~~d~l~~l~~Rl~ 272 (2307)
|+++||++|++++|++++ +|+.|.|.|.+|++..+...++.+. .++||+|+|+||+++|++..|+++.|. +|++
T Consensus 116 Gls~v~als~~~~v~t~~--~g~~~~~~~~~G~~~~~~~~~~~~~~~~~GT~V~f~Pd~~~F~~~~~~~~~l~---~rl~ 190 (390)
T 1kij_A 116 GASVVNALSEWTVVEVFR--EGKHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKPDPEIFGNLRFDPSKIR---ARLR 190 (390)
T ss_dssp SHHHHHHTEEEEEEEEEE--TTEEEEEEEETTEEEEEEEEEEECGGGCCEEEEEEEECHHHHTTCCCCHHHHH---HHHH
T ss_pred ceeeecccccceEEEEec--CCcEEEEEEcCCcccccceeeccccCCCCCcEEEEEEChHHhCCccccHHHHH---HHHH
Confidence 999999999999999974 7899999999997643333344332 579999999999999988899999875 9999
Q ss_pred HhhccCCCcEEEeccccCC-------ccchHHHHHHHhccC-CCCCCCeEEEEEecCCeeEEEEeecCCCc--eEEEeeC
Q psy7164 273 DAAASTKDVKVFLNGEKLP-------VKNFQDYVKLYTDRQ-DEDGDPVKIIYENVNPRWEVAIAPSDRGF--QQVSFVN 342 (2307)
Q Consensus 273 dlA~LnpGLkI~lnder~~-------~~G~~dYV~~~~~~~-~~~~~~~~ii~e~~~~~~EVAl~~s~~~y--~~~SFVN 342 (2307)
++|+|||||+|+|+|++.+ .+||++||.+++... ..+.+++++..+..+..||+|++|++ +| +++||||
T Consensus 191 ~~A~lnpgv~i~l~d~~~~~~~~f~~~~Gl~~~v~~l~~~~~~~~~~~i~~~~~~~~i~ve~a~~~~~-~~~~~~~sFvN 269 (390)
T 1kij_A 191 EVAYLVAGLKLVFQDRQHGKEEVFLDKGGVASFAKALAEGEDLLYEKPFLIRGTHGEVEVEVGFLHTQ-GYNAEILTYAN 269 (390)
T ss_dssp HHHHHTTTCEEEEEEGGGTEEEEECCTTHHHHHHHHHTTTSCBSCSSCEEEEEEETTEEEEEEEEEBS-SSCCEEEEEET
T ss_pred HhcCcCCCcEEEEEeCCCcceEEEEcCCcHHHHHHHHhCCCCcCCCCcEEEEeecCCeEEEEEEEecC-CCCceEEEEEc
Confidence 9999999999999999842 158999999988432 23445666666667889999999986 55 5799999
Q ss_pred CccCCCCcchhhHHHHHHHHHHHHHHHHhccccccceeeccccccccccchhhhhcccccccccccccccCChHhHhcce
Q psy7164 343 SIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHI 422 (2307)
Q Consensus 343 nI~T~eGGTHvdgfr~aLtr~i~~~~kkk~k~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~dvreg~~~vk~~dIre~L 422 (2307)
+|+|.+||||++||++||+++|++|+++++. +|+. ...++++|||+||
T Consensus 270 ~i~t~~GGTH~~g~~~alt~~i~~~~~~~~l----------------~k~~----------------~~~l~~~dvregl 317 (390)
T 1kij_A 270 MIPTRDGGTHLTAFKSAYSRALNQYAKKAGL----------------NKEK----------------GPQPTGDDLLEGL 317 (390)
T ss_dssp TEECTTCBHHHHHHHHHHHHHHHHHHHHTTC----------------CCSS----------------SCCCCTTTTTTTE
T ss_pred CeeeCCCCchhHHHHHHHHHHHHHHHHHhCc----------------cccc----------------cCCcCHHHHhhhc
Confidence 9999999999999999999999999997654 2221 2457889999999
Q ss_pred EEEEEeecCCCcccchhhhhhhc
Q psy7164 423 WIFINCLIVNPTFDSQTKENMTL 445 (2307)
Q Consensus 423 ~~~Vsvki~nP~FegQTKekL~~ 445 (2307)
++||||+++||+|+||||++|++
T Consensus 318 ~avisvki~~P~FegQTK~kL~~ 340 (390)
T 1kij_A 318 YAVVSVKLPNPQFEGQTKGKLLN 340 (390)
T ss_dssp EEEEEEECSSCCBCSTTCCSBCC
T ss_pred EEEEEeecCCCcccccccccccC
Confidence 99999999999999999999986
No 15
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=100.00 E-value=2e-62 Score=602.17 Aligned_cols=346 Identities=20% Similarity=0.328 Sum_probs=302.0
Q ss_pred CEEEEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHHHHH
Q psy7164 1614 PVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHAL 1693 (2307)
Q Consensus 1614 r~I~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~~A~ 1693 (2307)
|+|+||||||||||||++.+|+|+++||||++..+... . .+.|++|||+||++||++||++.+|+
T Consensus 1 r~i~hiD~d~FyasvE~~~~p~l~~~Pv~V~~~~~~~~--~-------------~g~V~a~syeAr~~GV~~gm~~~~A~ 65 (354)
T 3bq0_A 1 MIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTK--T-------------SGAVATANYEARKLGVKAGMPIIKAM 65 (354)
T ss_dssp CCEEEEEETTHHHHHHHHHCGGGTTSCEEEEECCC-----C-------------CCEEEEECHHHHHTTCCTTCBHHHHH
T ss_pred CEEEEEecChHHHHHHHHhCccccCCcEEEEcCCCCCC--C-------------CeEEEECCHHHHHhCCCCCCcHHHHH
Confidence 68999999999999999999999999999998210000 0 13477999999999999999999999
Q ss_pred HhCCCcEEecCChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCcccch
Q psy7164 1694 KKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQ 1773 (2307)
Q Consensus 1694 kLCPdL~ivpydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~~~ 1773 (2307)
++||+|+++|+||+.|+++|.+|++++.+|+|.
T Consensus 66 ~lcP~l~~~~~~~~~Y~~~s~~i~~il~~~tp~----------------------------------------------- 98 (354)
T 3bq0_A 66 QIAPSAIYVPMRKPIYEAFSNRIMNLLNKHADK----------------------------------------------- 98 (354)
T ss_dssp HHCTTCEEEECCHHHHHHHHHHHHHHHHTTCSE-----------------------------------------------
T ss_pred HHCCCeEEECCCHHHHHHHHHHHHHHHHHhCCC-----------------------------------------------
Confidence 999999999999999999999999888776544
Q ss_pred hhhcccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhcccch
Q psy7164 1774 DIICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLNP 1853 (2307)
Q Consensus 1774 ~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~ 1853 (2307)
T Consensus 99 -------------------------------------------------------------------------------- 98 (354)
T 3bq0_A 99 -------------------------------------------------------------------------------- 98 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchh-ccCCCHHHHHHHHHHH
Q psy7164 1854 IVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQ-ELSLTPLQFASYLRET 1932 (2307)
Q Consensus 1854 ~~~~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~-~~~~~~~~lA~~IR~~ 1932 (2307)
||++|+||+|+|+|++.+ +++ ++.++|++||++
T Consensus 99 ---------------------------------------------ve~~SiDE~~lDvt~~~~~~~~-~~~~la~~ir~~ 132 (354)
T 3bq0_A 99 ---------------------------------------------IEVASIDEAYLDVTNKVEGNFE-NGIELARKIKQE 132 (354)
T ss_dssp ---------------------------------------------EEEEETTEEEEECTTTTTTCHH-HHHHHHHHHHHH
T ss_pred ---------------------------------------------EEEecCCeeEEecCcchhhccC-CHHHHHHHHHHH
Confidence 445666777777777666 554 678899999999
Q ss_pred HHHHhCCeEEEEecCCHHHHHHHhhccCCCCEEEeChhhHHHHhhcCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHH
Q psy7164 1933 IAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLK 2012 (2307)
Q Consensus 1933 I~~~TG~tvSVGIA~NklLAKLASr~AKPnGq~~L~pe~v~~fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~ 2012 (2307)
|+++|||+||||||+||++||||++.+||+|++++.++++.+||+++||++|||||+++.++|+.+||+||+||+++|+.
T Consensus 133 i~~~~Gl~~svGia~nk~lAKlAs~~~Kp~g~~~~~~~~~~~~L~~lpv~~l~GiG~~~~~~L~~~Gi~t~~dL~~~~~~ 212 (354)
T 3bq0_A 133 ILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYN 212 (354)
T ss_dssp HHHHHCCCEEEEEESSHHHHHHHHHTTCSSCEEECCGGGHHHHHHHCBSTTSTTCCHHHHHHHTTTTCCBGGGGGGSCHH
T ss_pred HHHHHCCcEEeeeccCHHHHHHHhccCCCCCEEEECHHHHHHHHHhCCcccccCcCHHHHHHHHHcCCccHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCcchHHHHHHHhcCCCCCccccccCCcccEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhccccceEEEEEE
Q psy7164 2013 RLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKL 2092 (2307)
Q Consensus 2013 ~L~~~fG~k~G~~L~~~arGiD~~~V~~~~~rKSIs~e~nfg~r~~~~eel~~~L~~La~eL~~RLr~~~~~~r~LTLkL 2092 (2307)
.|+++||..+|.++|++|+|+|++++.+.. +|||+++.+|+.++.+.+++..+|..|+.+|+.||++ .+++|+|++
T Consensus 213 ~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~-~ksi~~~~tf~~~~~~~~~l~~~l~~l~~~l~~rL~~---~~~~v~l~~ 288 (354)
T 3bq0_A 213 ELEKITGKAKALYLLKLAQNKYSEPVENKS-KIPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNG---IPMRITVIA 288 (354)
T ss_dssp HHHHHHCHHHHHHHHHHHTTCCCCCCCSEE-CCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHTTTSS---EEEEEEEEE
T ss_pred HHHHHHCHHHHHHHHHHhCCCCCCCCcCCC-CceeEEeEeCCCCCCCHHHHHHHHHHHHHHHHHHHHh---hCCEEEEEE
Confidence 999999954499999999999999999888 9999999999999999999999999999999999998 899999999
Q ss_pred EEecCCCcccccccccCceeeeecceecc--CcCChhHHHHHHHHHHhhhcCCCC-C-ceEEeeeecccccc-ccCCccC
Q psy7164 2093 MVRSAEAPREASKFLGHGVCDYITKSSSL--PIYERPLIITYFLLLVRSAEAPRE-A-SKFLGHGVCDYITK-SSSLPMY 2167 (2307)
Q Consensus 2093 ~~R~~~Ap~ep~K~lGhG~cD~~skS~~L--pt~~~~~L~~aA~~lL~~i~~~~~-~-yr~~Gv~l~dl~sk-q~~L~l~ 2167 (2307)
++..+ +..+++..+ |+.+...|.+ ++.++++++.++. + ++.+|+.+.++.+. ..++++|
T Consensus 289 ~~~~~---------------~~~~~~~~l~~pt~~~~~i~~-~~~ll~~~~~~~~~~~vr~lgv~~~~l~~~~~~q~~LF 352 (354)
T 3bq0_A 289 IMEDL---------------DILSKGKKFKHGISIDNAYKV-AEDLLRELLVRDKRRNVRRIGVKLDNIIINKTNLSDFF 352 (354)
T ss_dssp EETTS---------------CEEEEEEECSSCCCHHHHHHH-HHHHHHHHTTSCSSCCEEEEEEEEEEEECC--------
T ss_pred EeCCC---------------CcceEEEECCCccCCHHHHHH-HHHHHHHHhccCCCCceEEEEEEEecCCCCCccccccc
Confidence 98432 234566666 5667789999 9999999988776 8 99999999887663 3344443
No 16
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=100.00 E-value=3e-62 Score=601.49 Aligned_cols=339 Identities=21% Similarity=0.345 Sum_probs=302.7
Q ss_pred EEEEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHHHHHH
Q psy7164 1615 VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALK 1694 (2307)
Q Consensus 1615 ~I~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~~A~k 1694 (2307)
+|+||||||||||||++.+|+|+++||||++..+.+. .+ +.|++|||+||++||++||++.+|++
T Consensus 2 ~i~hiD~d~FyasvE~~~~P~L~~~Pv~V~~~~~~~~--~~-------------g~V~a~sy~Ar~~GV~~gm~~~~A~~ 66 (362)
T 4f4y_A 2 IVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTK--TS-------------GAVATANYEARKLGVKAGMPIIKAMQ 66 (362)
T ss_dssp CEEEEECTTHHHHHHHHHCGGGTTSCEEEEEECSSSS--SC-------------EEEEEECHHHHHTTCCTTCBHHHHHH
T ss_pred EEEEEecCCHHHHHHhHhCccccCCeEEEecCCCCCC--CC-------------eEEEECCHHHHHcCCCCCCcHHHHHH
Confidence 7999999999999999999999999999998532110 01 34678999999999999999999999
Q ss_pred hCCCcEEecCChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCcccchh
Q psy7164 1695 KCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQD 1774 (2307)
Q Consensus 1695 LCPdL~ivpydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~~~~ 1774 (2307)
+||+|+++|+||+.|+++|++|++++.+|+|.
T Consensus 67 lcP~l~~~~~~~~~Y~~~s~~i~~il~~~tp~------------------------------------------------ 98 (362)
T 4f4y_A 67 IAPSAIYVPMRKPIYEAFSNRIMNLLNKHADK------------------------------------------------ 98 (362)
T ss_dssp HCTTSEEEECCHHHHHHHHHHHHHHHHTTCSE------------------------------------------------
T ss_pred HCCCeEEECCCHHHHHHHHHHHHHHHHHhCCC------------------------------------------------
Confidence 99999999999999999999999988776543
Q ss_pred hhcccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhcccchH
Q psy7164 1775 IICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLNPI 1854 (2307)
Q Consensus 1775 ~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~ 1854 (2307)
T Consensus 99 -------------------------------------------------------------------------------- 98 (362)
T 4f4y_A 99 -------------------------------------------------------------------------------- 98 (362)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchh-ccCCCHHHHHHHHHHHH
Q psy7164 1855 VILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQ-ELSLTPLQFASYLRETI 1933 (2307)
Q Consensus 1855 ~~~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~-~~~~~~~~lA~~IR~~I 1933 (2307)
||++|+||+|+|+|++.+ +++ ++.++|++||++|
T Consensus 99 --------------------------------------------ve~~SiDEa~LDvt~~~~~~~~-~~~~~a~~ir~~I 133 (362)
T 4f4y_A 99 --------------------------------------------IEVASIDEAYLDVTNKVEGNFE-NGIELARKIKQEI 133 (362)
T ss_dssp --------------------------------------------EEEEETTEEEEECTTTTTTCHH-HHHHHHHHHHHHH
T ss_pred --------------------------------------------EEEecCceEEEecCCccccccC-CHHHHHHHHHHHH
Confidence 455666777777777655 444 6789999999999
Q ss_pred HHHhCCeEEEEecCCHHHHHHHhhccCCCCEEEeChhhHHHHhhcCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHH
Q psy7164 1934 AKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKR 2013 (2307)
Q Consensus 1934 ~~~TG~tvSVGIA~NklLAKLASr~AKPnGq~~L~pe~v~~fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~ 2013 (2307)
+++|||+||||||+||++||||++.+||+|++++.++++.+||+++||++|||||+++.++|+.+||+|++||+++|+..
T Consensus 134 ~~~~Gl~~svGIa~nk~lAKlAs~~~Kp~g~~~~~~~~~~~~L~~lpv~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~~~~ 213 (362)
T 4f4y_A 134 LEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNE 213 (362)
T ss_dssp HHHHCCCCEEEEESSHHHHHHHHHTSCSSCEEECCTTTHHHHHHTCBSTTSTTCCSTTHHHHHHTTCCBGGGGTTSCHHH
T ss_pred HHHHCCcEEEEEeCCHHHHHHHHhcccCCCEEEECHHHHHHHHHhCChhhccCCCHHHHHHHHHcCCChHHHHhcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCcchHHHHHHHhcCCCCCccccccCCcccEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhccccceEEEEEEE
Q psy7164 2014 LQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLM 2093 (2307)
Q Consensus 2014 L~~~fG~k~G~~L~~~arGiD~~~V~~~~~rKSIs~e~nfg~r~~~~eel~~~L~~La~eL~~RLr~~~~~~r~LTLkL~ 2093 (2307)
|+++||++.|.+||+.|+|+|++++.+..+ |||+.+++|+.++.+.+++..+|.+||.+|+.||++ .+++|+|+++
T Consensus 214 L~~~fG~~~g~~l~~~a~G~d~~~v~~~~~-ksi~~~~tf~~~~~~~~~l~~~l~~l~~~l~~rLr~---~~~~v~l~i~ 289 (362)
T 4f4y_A 214 LEKITGKAKALYLLKLAQDEYNEPIRTRVR-KSIGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNG---IPMRITVIAI 289 (362)
T ss_dssp HHHHHCHHHHHHHHHHHTTCCCCCCCCCCC-CEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHCSS---EEEEEEEEEE
T ss_pred HHHHhChHHHHHHHHHhcCCCCCcCccCCC-cceEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHh---CCCEEEEEEE
Confidence 999999889999999999999999998888 999999999999999999999999999999999998 8999999999
Q ss_pred EecCCCcccccccccCceeeeecceeccCc-CChhHHHHHHHHHHhhhcC-CCCC-ceEEeeeecccccc
Q psy7164 2094 VRSAEAPREASKFLGHGVCDYITKSSSLPI-YERPLIITYFLLLVRSAEA-PREA-SKFLGHGVCDYITK 2160 (2307)
Q Consensus 2094 ~R~~~Ap~ep~K~lGhG~cD~~skS~~Lpt-~~~~~L~~aA~~lL~~i~~-~~~~-yr~~Gv~l~dl~sk 2160 (2307)
+..+ +..+++..++. .+...|.+++..++++++. .+.. ++.+||.+.++.+.
T Consensus 290 ~~~~---------------~~~t~s~~l~~p~d~~~i~~~a~~ll~~~~~~~~~~~vr~lGV~~~~L~~~ 344 (362)
T 4f4y_A 290 MEDL---------------DILSKGKKFKHGISIDNAYKVAEDLLRELLVRDKRRNVRRIGVKLDNIIIN 344 (362)
T ss_dssp ETTS---------------CEEEEEEECSSCCCHHHHHHHHHHHHHHHTTSSCSCCEEEEEEEEEEEEC-
T ss_pred ECCC---------------cEEEEEEECCCCCCHHHHHHHHHHHHHHHHhhcCCccEEEEEEEEeccccC
Confidence 8432 23455666632 7888999999999999996 5777 99999999888763
No 17
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=2.6e-63 Score=610.42 Aligned_cols=344 Identities=27% Similarity=0.395 Sum_probs=212.9
Q ss_pred CCEEEEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHHHH
Q psy7164 1613 EPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHA 1692 (2307)
Q Consensus 1613 ~r~I~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~~A 1692 (2307)
+|+|+||||||||||||++.+|+|+++||||++++... ..++.|+||||+||++||+.||++.+|
T Consensus 2 ~R~I~hiD~d~FyasvE~~~~P~L~~kPv~V~~~~d~~---------------~~~g~v~a~syeAr~~GV~~gm~~~~A 66 (356)
T 4dez_A 2 TKWVLHVDLDQFLASVELRRRPDLRGQPVIVGGSGDPS---------------EPRKVVTCASYEAREFGVHAGMPLRAA 66 (356)
T ss_dssp CEEEEEEEETTHHHHHHHHHCGGGTTSCEEEEEC---------------------CCEEEEECHHHHTTTCCTTSBHHHH
T ss_pred ceEEEEEcCCcHHHHHHhhhCccccCCeEEEEeCCCCC---------------CCceEEEEECHHHHHhCCCCCCcHHHH
Confidence 58999999999999999999999999999999743111 012457899999999999999999999
Q ss_pred HHhCCCcEEecCChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCcccc
Q psy7164 1693 LKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLA 1772 (2307)
Q Consensus 1693 ~kLCPdL~ivpydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~~ 1772 (2307)
+++||+|+++|+||+.|+++|.+|+++|.+|+|.||.
T Consensus 67 ~~lcP~l~~~~~~~~~Y~~~s~~v~~il~~~~p~ve~------------------------------------------- 103 (356)
T 4dez_A 67 ARRCPDATFLPSDPAAYDEASEQVMGLLRDLGHPLEV------------------------------------------- 103 (356)
T ss_dssp HHHCTTCEEEECCHHHHHHHHHHHHHHHHTTSSCEEE-------------------------------------------
T ss_pred HHhCCCeEEECCcHHHHHHHHHHHHHHhhhcCCceee-------------------------------------------
Confidence 9999999999999999999999999988877655554
Q ss_pred hhhhcccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhcccc
Q psy7164 1773 QDIICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLN 1852 (2307)
Q Consensus 1773 ~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~ 1852 (2307)
T Consensus 104 -------------------------------------------------------------------------------- 103 (356)
T 4dez_A 104 -------------------------------------------------------------------------------- 103 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchhccCCCHHHHHHHHHHH
Q psy7164 1853 PIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRET 1932 (2307)
Q Consensus 1853 ~~~~~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~~~~~~~~~lA~~IR~~ 1932 (2307)
||+||+|+|+++... .++.++|.+||++
T Consensus 104 -------------------------------------------------~SiDEafld~t~~~~---~~~~~~a~~ir~~ 131 (356)
T 4dez_A 104 -------------------------------------------------WGWDEAYLGADLPDE---SDPVEVAERIRTV 131 (356)
T ss_dssp -------------------------------------------------ETTTEEEEEEECCTT---CCHHHHHHHHHHH
T ss_pred -------------------------------------------------cCcchhheecccccC---CCHHHHHHHHHHH
Confidence 455555555554332 2567899999999
Q ss_pred HHHHhCCeEEEEecCCHHHHHHHhhccCCCCEEEeChhhHHHHhhcCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHH
Q psy7164 1933 IAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLK 2012 (2307)
Q Consensus 1933 I~~~TG~tvSVGIA~NklLAKLASr~AKPnGq~~L~pe~v~~fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~ 2012 (2307)
|+++||++||||||+||+|||+|++.+||+|++++.++++.+||+++||++|||||+++.++|+.+||+||+||+++|+.
T Consensus 132 i~~~~gl~~siGIa~nk~lAKlAs~~~Kp~g~~~i~~~~~~~~L~~lpv~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~~~ 211 (356)
T 4dez_A 132 VAAETGLSCSVGISDNKQRAKVATGFAKPAGIYVLTEANWMTVMGDRPPDALWGVGPKTTKKLAAMGITTVADLAVTDPS 211 (356)
T ss_dssp HHHHHSCCEEEEEESSHHHHHHHHHHHCSSCEEECCTTTHHHHHTTSCGGGSTTCCHHHHHHHHHTTCCSHHHHHTSCHH
T ss_pred HHHHhCCccccchhccHHHHHHHHHHhhhcCcccccchhhhhhhhcCcHHHHcCCchhHHHHHHHcCCCeecccccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCcchHHHHHHHhcCCCCCcccccc-CCcccEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhccccceEEEEE
Q psy7164 2013 RLQNEVGNKNGLTLYKHCRGEDDKELTFEH-QRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLK 2091 (2307)
Q Consensus 2013 ~L~~~fG~k~G~~L~~~arGiD~~~V~~~~-~rKSIs~e~nfg~r~~~~eel~~~L~~La~eL~~RLr~~~~~~r~LTLk 2091 (2307)
.|.++||.+.|.+||++++|+|++++.+.. .+||++.+++|+.++.+.+++..+|..||.+++.||+++++.+++|+|+
T Consensus 212 ~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~~~~ksi~~~~tf~~~~~~~~~l~~~l~~la~~~~~rLr~~~~~~~~l~v~ 291 (356)
T 4dez_A 212 VLTTAFGPSTGLWLLLLAKGGGDTEVSSEPWVPRSRSHVVTFPQDLTERREMDSAVRDLALQTLAEIVEQGRIVTRVAVT 291 (356)
T ss_dssp HHHHHHCHHHHHHHHHHHTTCCCCCCCC----------------------------------------------------
T ss_pred HHHHHhCChHHHHHHHHHcCCCcccccccccccccccccccCCCcCCCHHHHHHHHHHHHHHHHHHHHHcCCceeEEEEE
Confidence 999999988899999999999999998764 6899999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCcccccccccCceeeeecceeccCcCChhHHHHHHHHHHhhhcCCCCCceEEeeeeccccccccCCccCcchH
Q psy7164 2092 LMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQA 2171 (2307)
Q Consensus 2092 L~~R~~~Ap~ep~K~lGhG~cD~~skS~~Lpt~~~~~L~~aA~~lL~~i~~~~~~yr~~Gv~l~dl~skq~~L~l~t~~~ 2171 (2307)
|++..+ ...+++.+| +.++++.
T Consensus 292 ir~~~f---------------~~~t~~~~l-------------------------------------------~~pt~d~ 313 (356)
T 4dez_A 292 VRTSTF---------------YTRTKIRKL-------------------------------------------PAPSTDA 313 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEeCCC---------------eEEEEEEEC-------------------------------------------CcccCCH
Confidence 987321 123334333 3345556
Q ss_pred HHHHHHHHHHHHhcCCCCccEEEeeeeccCcccc
Q psy7164 2172 SQILKEVLFIVNKLKVDPVELRGIGIQVSKLEHQ 2205 (2307)
Q Consensus 2172 ~~I~~e~~~L~r~~g~~~~~lRgIGIq~skL~~~ 2205 (2307)
..|.+++..|++++.. ...+|+|||++++|.+.
T Consensus 314 ~~i~~~a~~ll~~~~~-~~~vRliGV~ls~l~d~ 346 (356)
T 4dez_A 314 GQIVDTALAVLDQFEL-DRPVRLLGVRLELAMDD 346 (356)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHhccC-CCCEEEEEEEECCCCCC
Confidence 6677788888888764 35799999999888654
No 18
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=100.00 E-value=1.3e-61 Score=618.04 Aligned_cols=397 Identities=24% Similarity=0.375 Sum_probs=308.8
Q ss_pred CCCEEEEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHHH
Q psy7164 1612 PEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGH 1691 (2307)
Q Consensus 1612 ~~r~I~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~~ 1691 (2307)
..|+|+||||||||||||++++|+|+++||||++. ++|++|||+||+|||++||++++
T Consensus 88 ~~r~I~hiDmDaFYAsvE~~~~P~Lr~kPvaV~~~----------------------~vV~t~nYeAR~~GVr~gMp~~~ 145 (517)
T 3pzp_A 88 LSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSM----------------------SMLSTSNYHARRFGVRAAMPGFI 145 (517)
T ss_dssp CSCCEEEEEESSHHHHHHHHHCGGGTTSCEEEEET----------------------TEEEEECHHHHTTTCCTTSCHHH
T ss_pred cCcEEEEEecCcHHHHHHHHhCccccCCcEEEecC----------------------CEEEecCHHHHHcCCCCCCcHHH
Confidence 46999999999999999999999999999999962 24779999999999999999999
Q ss_pred HHHhCCCcEEecCChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCccc
Q psy7164 1692 ALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPL 1771 (2307)
Q Consensus 1692 A~kLCPdL~ivpydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~ 1771 (2307)
|+++||+|++||+||+.|+++|++|+++|.+|+|.||++|| ||+|||| + ..+.. ..+
T Consensus 146 Ak~lCP~Lvvv~~d~~~Y~~~S~~v~~il~~ytp~ve~~Si--DEafLDv-----T-~~~~~----------~~~----- 202 (517)
T 3pzp_A 146 AKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSL--DEAYLNI-----T-KHLEE----------RQN----- 202 (517)
T ss_dssp HHHHCTTCEEECCCHHHHHHHHHHHHHHHHTTCTTCBCCSS--SEEEEET-----H-HHHHH----------HTS-----
T ss_pred HHHhCCceEEECCCHHHHHHHHHHHHHHHHHcCCcEEEECC--ceEEEEc-----c-ccccc----------ccc-----
Confidence 99999999999999999999999999999999999999999 9999987 1 11100 000
Q ss_pred chhhhcccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhccc
Q psy7164 1772 AQDIICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHL 1851 (2307)
Q Consensus 1772 ~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~ 1851 (2307)
.+. .-++|++.
T Consensus 203 --------------~~~-------------------------------~~~~~~~~------------------------ 213 (517)
T 3pzp_A 203 --------------WPE-------------------------------DKRRYFIK------------------------ 213 (517)
T ss_dssp --------------CCS-------------------------------TTTEEECC------------------------
T ss_pred --------------ccc-------------------------------cccccccc------------------------
Confidence 000 00011100
Q ss_pred chHHHHHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeec---------------CCceEEcCccchh
Q psy7164 1852 NPIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVS---------------CDEMYVDCSQLLQ 1916 (2307)
Q Consensus 1852 ~~~~~~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~S---------------iDEaflDlt~~l~ 1916 (2307)
.+.....+...-..+.+.......+|.+...+ -+..-.+.....+
T Consensus 214 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (517)
T 3pzp_A 214 --------------------MGSSVENDNPGKEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNNPQILQNSV 273 (517)
T ss_dssp ----------------------------------------------------------------------------CCEE
T ss_pred --------------------cccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 00011100000000000000000001100000 0000011112235
Q ss_pred ccCCCHHHHHHHHHHHHHHHhCCeEEEEecCCHHHHHHHhhccCCCCEEEeChh--hHHHHhhcCCCCCCCCCChhHHHH
Q psy7164 1917 ELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQ--IISDFMLNIPLSDLPGVGHSLLFK 1994 (2307)
Q Consensus 1917 ~~~~~~~~lA~~IR~~I~~~TG~tvSVGIA~NklLAKLASr~AKPnGq~~L~pe--~v~~fL~~LPV~dLpGIG~~~~~k 1994 (2307)
++|.++.++|++||++|+++||||||||||+||+|||||++.+|||||++|.++ .+.+||++|||++|||||+++.++
T Consensus 274 lfg~~~~~ia~~IR~~I~~~tGlt~S~GIA~Nk~LAKlAs~~~KP~G~~vl~~~~~~v~~fL~~LPV~kl~GIG~~t~~~ 353 (517)
T 3pzp_A 274 VFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKM 353 (517)
T ss_dssp ECCSSHHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHTTCSSCEEECCSSHHHHHHHHTTCBGGGSTTCCHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHhCCeEEEEEcCCHHHHHHHhCcCCCCCEEEecCChHHHHHHHhcCChhhhccccHHHHHH
Confidence 566678999999999999999999999999999999999999999999999874 789999999999999999999999
Q ss_pred HHhcCCccchhhhcCCHHHHHhhhCcchHHHHHHHhcCCCCCccccccCCcccEEEEecCcCCCCHHHHHHHHHHHHHHH
Q psy7164 1995 LNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEV 2074 (2307)
Q Consensus 1995 L~~lGI~TigDL~~lp~~~L~~~fG~k~G~~L~~~arGiD~~~V~~~~~rKSIs~e~nfg~r~~~~eel~~~L~~La~eL 2074 (2307)
|+.+||+||+||+++ +..|.++||...+.++|+.|+|+|+++|.+..++|||+.+++|+. +.+.+++..+|..||.+|
T Consensus 354 L~~lGI~TigDL~~~-~~~L~~~fG~~~~~~l~~~a~Gid~~~v~~~~~~KSi~~e~tf~~-~~~~e~l~~~l~~La~~l 431 (517)
T 3pzp_A 354 LKALGIITCTELYQQ-RALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSE-INKAEEQYSLCQELCSEL 431 (517)
T ss_dssp HHHTTCCBHHHHHHH-HHHHHHHSCHHHHHHHHHHHTTCCCCSCCCCCCCCCEEEEEEEEE-ECCHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHhh-HHHHHHHhChHHHHHHHHHHcCCCcccccCCCCCccceeEEEccc-ccCHHHHHHHHHHHHHHH
Confidence 999999999999998 478999999767889999999999999999889999999999996 889999999999999999
Q ss_pred HHHHHhccccceEEEEEEEEecCCCcccccccccCceeeeecceecc--CcCChhHHHHHHHHHHhhhcC----CCCCce
Q psy7164 2075 EKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL--PIYERPLIITYFLLLVRSAEA----PREASK 2148 (2307)
Q Consensus 2075 ~~RLr~~~~~~r~LTLkL~~R~~~Ap~ep~K~lGhG~cD~~skS~~L--pt~~~~~L~~aA~~lL~~i~~----~~~~yr 2148 (2307)
+.||+++++.+++|+|+|++..+. ..+++.++ |+.+...|+++|..+|++.+. .+..+|
T Consensus 432 ~~rLr~~~~~~~~vtlklk~~~f~---------------~~tr~~tl~~~t~~~~~i~~~a~~Ll~~~~~~~~~~~~~iR 496 (517)
T 3pzp_A 432 AQDLQKERLKGRTVTIKLKNVNFE---------------VKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLR 496 (517)
T ss_dssp HHHHHTTTCCBSCEEEEEEETTSC---------------EEEECCCCSSCBCSHHHHHHHHHHHHHHHHHHHTTSCCCEE
T ss_pred HHHHHHcCCceeEEEEEEEecCCc---------------eeeEEEeCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCcEE
Confidence 999999999999999999985431 23555555 677889999999999998752 345689
Q ss_pred EEeeeeccccc
Q psy7164 2149 FLGHGVCDYIT 2159 (2307)
Q Consensus 2149 ~~Gv~l~dl~s 2159 (2307)
.+||.++++.+
T Consensus 497 llGV~~s~l~~ 507 (517)
T 3pzp_A 497 LMGVRISSFPN 507 (517)
T ss_dssp EEEEEECCCCC
T ss_pred EEEEEecCCcC
Confidence 99999988765
No 19
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=100.00 E-value=1.5e-61 Score=604.84 Aligned_cols=390 Identities=23% Similarity=0.359 Sum_probs=311.4
Q ss_pred CCCCCEEEEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcH
Q psy7164 1610 SEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFV 1689 (2307)
Q Consensus 1610 ~~~~r~I~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l 1689 (2307)
+.+.|+|+||||||||||||++.+|+|+++||||++. +.|++|||+||+|||++||++
T Consensus 24 ~~~~r~i~hiD~d~FyASvE~~~~P~L~~~Pv~V~~~----------------------g~V~a~syeAR~~GV~~gm~~ 81 (420)
T 3osn_A 24 NASSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQK----------------------YLVVTCNYEARKLGVKKLMNV 81 (420)
T ss_dssp -CCCCCEEEEEETTHHHHHHHHHCGGGTTSCEEEEET----------------------TEEEEECHHHHTTTCCTTEEH
T ss_pred CCCCCEEEEEecCcHHHHHHHHhCcCccCCeEEEcCC----------------------CEEEECCHHHHHcCCCCCCcH
Confidence 4567999999999999999999999999999999862 347899999999999999999
Q ss_pred HHHHHhCCCcEEecC-ChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCC
Q psy7164 1690 GHALKKCPNLKIVPY-DFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTT 1768 (2307)
Q Consensus 1690 ~~A~kLCPdL~ivpy-dfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~ 1768 (2307)
.+|+++||+|++++. ||+.|+++|++|++++.+|+|.||.+|+ ||+|+|+. ....
T Consensus 82 ~~A~~lcP~lv~v~~~~~~~Y~~~S~~i~~il~~~tp~ve~~Si--DE~fLDvt------~~~~---------------- 137 (420)
T 3osn_A 82 RDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGF--DENFVDLT------EMVE---------------- 137 (420)
T ss_dssp HHHHHHCTTCEEEECCCCHHHHHHHHHHHHHHHHHCSCEEEETT--TEEEEECH------HHHH----------------
T ss_pred HHHHHhCccccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEecC--CEEEEECc------ccch----------------
Confidence 999999999999995 9999999999999999999999999999 99999871 1000
Q ss_pred cccchhhhcccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhh
Q psy7164 1769 EPLAQDIICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEE 1848 (2307)
Q Consensus 1769 ~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~ 1848 (2307)
..+.++ . |.+.
T Consensus 138 --------------------------------------------------~~l~~~----~--~~~~------------- 148 (420)
T 3osn_A 138 --------------------------------------------------KRLQQL----Q--SDEL------------- 148 (420)
T ss_dssp --------------------------------------------------HHHHHS----C--SSSG-------------
T ss_pred --------------------------------------------------hhcccc----c--cccc-------------
Confidence 000000 0 0000
Q ss_pred cccchHHHHHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchhccCCCHHHHHHH
Q psy7164 1849 RHLNPIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASY 1928 (2307)
Q Consensus 1849 ~~~~~~~~~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~~~~~~~~~lA~~ 1928 (2307)
.+ . . +.- ..+.-+. .++.+........+.++|++
T Consensus 149 ---~~-------------------~------------~--------~~g--~l~g~~~--~~~~~~~~~~l~~~~~la~~ 182 (420)
T 3osn_A 149 ---SA-------------------V------------T--------VSG--HVYNNQS--INLLDVLHIRLLVGSQIAAE 182 (420)
T ss_dssp ---GG-------------------C------------C--------CCS--EEGGGCC--CCTTCHHHHHHHHHHHHHHH
T ss_pred ---cc-------------------c------------c--------ccc--ccccccc--cccccchhhcchHHHHHHHH
Confidence 00 0 0 000 0000000 01111110000125789999
Q ss_pred HHHHHHHHhCCeEEEEecCCHHHHHHHhhccCCCCEEEeChhhHHHHhhcCC-CCCCCCCChhHHHHHHhcCCccchhhh
Q psy7164 1929 LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIP-LSDLPGVGHSLLFKLNSLGAQTCGDLQ 2007 (2307)
Q Consensus 1929 IR~~I~~~TG~tvSVGIA~NklLAKLASr~AKPnGq~~L~pe~v~~fL~~LP-V~dLpGIG~~~~~kL~~lGI~TigDL~ 2007 (2307)
||++|+++||+|||||||+||+|||||++.+||+|++++.++++.+||+++| |++|||||++++++|+.+||+|++||+
T Consensus 183 Ir~~I~~~~Glt~svGIa~nk~LAKlAs~~~KP~g~~vl~~~~~~~~L~~Lppv~~l~GIG~~t~~~L~~lGI~TigdLa 262 (420)
T 3osn_A 183 MREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCLEALGINSVRDLQ 262 (420)
T ss_dssp HHHHHHHHHCCCEEEEEESSHHHHHHHHTSSCSSCEEECCGGGHHHHHHHCSSGGGSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHCCcEEEEEeCCHHHHHHhhhhcCCCCeEEecHHHHHHhhccCccHHHccCCCHHHHHHHHHhCCCcHHHHh
Confidence 9999999999999999999999999999999999999999999999999997 999999999999999999999999999
Q ss_pred cCCHHHHHhhhCcchHHHHHHHhcCCCCCccccccCCcccEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhccccceE
Q psy7164 2008 NISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKC 2087 (2307)
Q Consensus 2008 ~lp~~~L~~~fG~k~G~~L~~~arGiD~~~V~~~~~rKSIs~e~nfg~r~~~~eel~~~L~~La~eL~~RLr~~~~~~r~ 2087 (2307)
++|+..|+++||...|.+||++++|+|+++|.+..++|||+.+.+|+ ++.+.+++..+|..|+.+|+.||+++++.+++
T Consensus 263 ~~~~~~L~~~fG~~~g~~L~~~a~G~d~~~V~~~~~~kSi~~e~tf~-~~~~~~~~~~~l~~La~~l~~rLr~~~~~~~t 341 (420)
T 3osn_A 263 TFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFK-KCSSEVEAKNKIEELLASLLNRVCQDGRKPHT 341 (420)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCSCSEEEEEEECS-SCCCSSSHHHHHHHHHHHHHHHHHHHCSCEEE
T ss_pred hCCHHHHHHHhCchHHHHHHHHhcCCCccccCCCCCCCceeeeeeCC-CCCCHHHHHHHHHHHHHHHHHHHHHcCCcccE
Confidence 99999999999966899999999999999999988999999999998 48899999999999999999999999999999
Q ss_pred EEEEEEEecCCCcccccccccCceeeeecceeccCcCChhHHHHHHHHHHhhhcCCCCCceEEeeeeccccccccCCccC
Q psy7164 2088 ITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMY 2167 (2307)
Q Consensus 2088 LTLkL~~R~~~Ap~ep~K~lGhG~cD~~skS~~Lpt~~~~~L~~aA~~lL~~i~~~~~~yr~~Gv~l~dl~skq~~L~l~ 2167 (2307)
|+|++++.+.. ...+..+++.++|.+....+ -...
T Consensus 342 v~l~ir~~~~~-----------~~~~~~sr~~~l~~~~~~~l----------------------------------~~~~ 376 (420)
T 3osn_A 342 VRLIIRRYSSE-----------KHYGRESRQCPIPSHVIQKL----------------------------------GTGN 376 (420)
T ss_dssp EEEEEEEECSS-----------CCCCCEEEEEECCTTTCCC---------------------------------------
T ss_pred EEEEEEeCCCC-----------CCCceeEEEEECCCcccccc----------------------------------ccCC
Confidence 99999863211 11245678888875422100 0013
Q ss_pred cchHHHHHHHHHHHHHhcCCC--CccEEEeeeeccCccccc
Q psy7164 2168 ISQASQILKEVLFIVNKLKVD--PVELRGIGIQVSKLEHQS 2206 (2307)
Q Consensus 2168 t~~~~~I~~e~~~L~r~~g~~--~~~lRgIGIq~skL~~~S 2206 (2307)
++..+.|+..+..||++++.. +..+|+|||.+++|.+..
T Consensus 377 t~~~~~i~~~a~~Lf~~~~~~~~~~~iRllgv~~~~l~~~~ 417 (420)
T 3osn_A 377 YDVMTPMVDILMKLFRNMVNVKMPFHLTLLSVCFCNLKALN 417 (420)
T ss_dssp CTTHHHHHHHHHHHHHHHSCSSSCCEEEEEEEEEEEEC---
T ss_pred CchHHHHHHHHHHHHHHhhcccCCcceeEEEEEEeCcccCc
Confidence 567788999999999998743 345899999999997653
No 20
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=100.00 E-value=1.3e-60 Score=599.56 Aligned_cols=395 Identities=22% Similarity=0.392 Sum_probs=310.4
Q ss_pred CCCCEEEEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHH
Q psy7164 1611 EPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVG 1690 (2307)
Q Consensus 1611 ~~~r~I~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~ 1690 (2307)
+..|+|+||||||||||||++.+|+|+++||||++...++ .+.|+||||+||+|||++||++.
T Consensus 7 ~~~r~I~hiD~d~FyAsvE~~~~P~L~~kPvvV~~~~~~~-----------------~g~viA~syeAR~~GV~~gm~~~ 69 (435)
T 4ecq_A 7 GQDRVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWK-----------------GGGIIAVSYEARAFGVTRSMWAD 69 (435)
T ss_dssp SCSCCEEEEEETTHHHHHHHHHCGGGTTSCEEEEECSTTT-----------------TCEEEEECHHHHTTTCCTTCBHH
T ss_pred CCCcEEEEEccchHHHHHHhhhCccccCCcEEEeccCCCC-----------------CCeEEEeCHHHHHhCCCCCCcHH
Confidence 4579999999999999999999999999999999853221 12467899999999999999999
Q ss_pred HHHHhCCCcEEec-------CChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhccc
Q psy7164 1691 HALKKCPNLKIVP-------YDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSR 1763 (2307)
Q Consensus 1691 ~A~kLCPdL~ivp-------ydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~ 1763 (2307)
+|+++||+|++++ +||+.|+++|++|+++|.+|+ .||++|| ||+|||| + ....
T Consensus 70 ~A~~lcP~l~~~~~~~~~~~~~~~~Y~~~S~~i~~il~~~~-~vE~~Si--DEafLDl-----T-~~~~----------- 129 (435)
T 4ecq_A 70 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASI--DEAYVDL-----T-SAVQ----------- 129 (435)
T ss_dssp HHHHHCTTCEEEECCEETTEECCHHHHHHHHHHHHHHHHHS-CEEEEET--TEEEEEC-----H-HHHH-----------
T ss_pred HHHHhCCCeEEeccccccCCCCHHHHHHHHHHHHHHHHhcC-ceeeccc--ceEEEEC-----c-cchh-----------
Confidence 9999999999997 799999999999999999999 9999999 9999987 1 1000
Q ss_pred ccCCCcccchhhhcccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhh
Q psy7164 1764 EQNTTEPLAQDIICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLS 1843 (2307)
Q Consensus 1764 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ 1843 (2307)
..+.+.+ +.|.... .
T Consensus 130 -------------------------------------------------------~~l~~l~----g~~~~~~----~-- 144 (435)
T 4ecq_A 130 -------------------------------------------------------ERLQKLQ----GQPISAD----L-- 144 (435)
T ss_dssp -------------------------------------------------------HHHHHHT----TCCCCGG----G--
T ss_pred -------------------------------------------------------hcchhcc----ccccccc----c--
Confidence 0000000 0000000 0
Q ss_pred hhhhhcccchHHHHHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCce-------EE-----cC
Q psy7164 1844 NLVEERHLNPIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEM-------YV-----DC 1911 (2307)
Q Consensus 1844 ~~~~~~~~~~~~~~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEa-------fl-----Dl 1911 (2307)
....| +..+|............++. |+ +.
T Consensus 145 -------------------------~~~~~--------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (435)
T 4ecq_A 145 -------------------------LPSTY--------------IEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDN 185 (435)
T ss_dssp -------------------------CTTEE--------------ETTCSCCCC-----CSHHHHHHHHHHHHHHHCCTTC
T ss_pred -------------------------ccccc--------------cccCCCcccccccccchhhhhccccccccccccccc
Confidence 00000 00000000000000000000 00 00
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHHhCCeEEEEecCCHHHHHHHhhccCCCCEEEeChhhHHHHhhcCCCCCCCCCChhH
Q psy7164 1912 SQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSL 1991 (2307)
Q Consensus 1912 t~~l~~~~~~~~~lA~~IR~~I~~~TG~tvSVGIA~NklLAKLASr~AKPnGq~~L~pe~v~~fL~~LPV~dLpGIG~~~ 1991 (2307)
.+........+..+|++||++|+++|||+||||||+||+|||||++.+||+|++++.++++.+||+++||++|||||+++
T Consensus 186 ~~~~~~~l~~~~~ia~~Ir~~I~~~~Gl~~svGIa~nk~lAKlAs~~~Kp~g~~vv~~~~~~~~L~~lpv~~l~GiG~~~ 265 (435)
T 4ecq_A 186 LTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKL 265 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHHSCSSCEEECCGGGHHHHHHTCBGGGSTTCSSHH
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHhCCcEEEEecCCHHHHHHHhccCCCCceEEEehhHHHHHHhhCCHHHhcCCCHHH
Confidence 00000000013478999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-HHhcCCccchhhhcCCHHHHHhhhCcchHHHHHHHhcCCCCCccccccCCcccEEEEecCcC--CCCHHHHHHHHH
Q psy7164 1992 LFK-LNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIR--FQNNQEMETFLK 2068 (2307)
Q Consensus 1992 ~~k-L~~lGI~TigDL~~lp~~~L~~~fG~k~G~~L~~~arGiD~~~V~~~~~rKSIs~e~nfg~r--~~~~eel~~~L~ 2068 (2307)
.++ |+.+||+|++||+++|+..|+++||.++|.+||+.|+|+|+++|.+..++|||+++.+|+.+ +.+.+++..+|.
T Consensus 266 ~~~lL~~lGI~TigdLa~~~~~~L~~~fG~~~g~~L~~~a~G~d~~~v~~~~~~ksi~~~~tf~~~~~i~~~~~l~~~l~ 345 (435)
T 4ecq_A 266 GASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLL 345 (435)
T ss_dssp HHHHHHHHTCCBGGGGGGSCHHHHHHHHCHHHHHHHHHHTTTCCCCCCCCBCSCSCEEEEEECCGGGCEEEHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHhhCCHHHHHHHhCccHHHHHHHHhhCCCCcccCCCCCCCeeeeeEEcCCCCCCCCHHHHHHHHH
Confidence 877 79999999999999999999999998899999999999999999998899999999999985 899999999999
Q ss_pred HHHHHHHHHHHhc----cccceEEEEEEEEecCCCcccccccccCceeeeecceeccCcCChhHHHHHHHHHHhhhcCC-
Q psy7164 2069 QLAGEVEKRLEEV----KMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAP- 2143 (2307)
Q Consensus 2069 ~La~eL~~RLr~~----~~~~r~LTLkL~~R~~~Ap~ep~K~lGhG~cD~~skS~~Lpt~~~~~L~~aA~~lL~~i~~~- 2143 (2307)
.|+.+|+.||+++ ++.+++|+|++++.... ....++|+.+++.++...|...|..++++++..
T Consensus 346 ~la~~l~~rLr~~~~~~~~~~~~l~v~ir~~~~~------------~~~~~~R~~~l~~~~~~~i~~~a~~L~~~~~~~~ 413 (435)
T 4ecq_A 346 QLAQELEERLTKDRNDNDRVATQLVVSIRVQGDK------------RLSSLRRCCALTRYDAHKMSHDAFTVIKNCNTSG 413 (435)
T ss_dssp HHHHHHHHHHHHHHHHHSEEEEEEEEEEEETTCC------------SSCSEEEEEECCSCCHHHHHHHHHHHHGGGCCCS
T ss_pred HHHHHHHHHHHhhhhhcCceEEEEEEEEEeCCCC------------CCceeEEeccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 9999999999998 79999999999983211 124568999999999999999999999999853
Q ss_pred -----CCCceEEeeeecccc
Q psy7164 2144 -----REASKFLGHGVCDYI 2158 (2307)
Q Consensus 2144 -----~~~yr~~Gv~l~dl~ 2158 (2307)
+.+.+.+||.+++|.
T Consensus 414 ~~~~~~~pir~lgvs~s~f~ 433 (435)
T 4ecq_A 414 IQTEWSPPLTMLFLCATKFS 433 (435)
T ss_dssp STTEEEEEEEEEEEEEEEEE
T ss_pred ccccCCCCeeEEEEEEeecc
Confidence 356889999887653
No 21
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=100.00 E-value=3.9e-61 Score=608.58 Aligned_cols=392 Identities=24% Similarity=0.381 Sum_probs=297.3
Q ss_pred CCCEEEEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHHH
Q psy7164 1612 PEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGH 1691 (2307)
Q Consensus 1612 ~~r~I~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~~ 1691 (2307)
..|+|+||||||||||||++++|+|+++||||++. +.|++|||+||+|||++||++.+
T Consensus 32 ~~r~i~hiD~D~FyAsvE~~~~P~L~~kPvaV~~~----------------------~~V~a~syeAR~~GV~~gm~~~~ 89 (459)
T 1t94_A 32 LSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSM----------------------SMLSTSNYHARRFGVRAAMPGFI 89 (459)
T ss_dssp CSCCEEEEEETTHHHHHHHHHCGGGTTSCEEEECS----------------------SCEEEECHHHHHTTCCTTCCHHH
T ss_pred CCceEEEEecccHHHHHHHhhCccccCCcEEEccC----------------------CeEEecCHHHHHcCCCCCCcHHH
Confidence 46899999999999999999999999999999751 34789999999999999999999
Q ss_pred HHHhCCCcEEecCChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCccc
Q psy7164 1692 ALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPL 1771 (2307)
Q Consensus 1692 A~kLCPdL~ivpydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~ 1771 (2307)
|+++||+|+++|+||+.|+++|++|+++|.+|+|.||++|| ||+|+||. ..+... . +
T Consensus 90 A~~lCP~lv~v~~d~~~Y~~~S~~i~~il~~~~p~ve~~Si--DEafLDvT------~~~~~~---------~----~-- 146 (459)
T 1t94_A 90 AKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSL--DEAYLNIT------KHLEER---------Q----N-- 146 (459)
T ss_dssp HHHHCTTCEEECCCHHHHHHHHHHHHHHHHHHCTTCEECSS--SEEEEECH------HHHHHH---------T----T--
T ss_pred HHHHCCCeEEECCCHHHHHHHHHHHHHHHHHhCCceEEeec--ceEEEECc------hhHHHh---------h----c--
Confidence 99999999999999999999999999999999999999999 99999871 100000 0 0
Q ss_pred chhhhcccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhccc
Q psy7164 1772 AQDIICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHL 1851 (2307)
Q Consensus 1772 ~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~ 1851 (2307)
.+ +..+.+++
T Consensus 147 ------------------~~---------------------------~~~~~~~~------------------------- 156 (459)
T 1t94_A 147 ------------------WP---------------------------EDKRRYFI------------------------- 156 (459)
T ss_dssp ------------------CC---------------------------GGGSEEEC-------------------------
T ss_pred ------------------cc---------------------------cccccccc-------------------------
Confidence 00 00000000
Q ss_pred chHHHHHHHhhcccccccchhhHHHHHHHhH-----HHhhcccCCCCCCCceeeeec----------CCceEE-----cC
Q psy7164 1852 NPIVILLRFLRRHVGKKESTVWAEAYQEMLS-----CVQSAMKHKPSSESKIVSAVS----------CDEMYV-----DC 1911 (2307)
Q Consensus 1852 ~~~~~~~~~~~~~~g~~~ss~~~~lY~d~s~-----rv~~~l~~~~~~~Sp~Ve~~S----------iDEafl-----Dl 1911 (2307)
.++..... ....+ .......+|.+...+ .++.+- ..
T Consensus 157 -----------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (459)
T 1t94_A 157 -----------------------KMGSSVENDNPGKEVNKL-SEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNNPQI 212 (459)
T ss_dssp -----------------------CC---CCCCCCCGGGGGG-STTTTTTGGGCC----------------------CCCC
T ss_pred -----------------------ccccccccccccCccccc-cccccccccccccccccccccccccccccccccccccc
Confidence 00000000 00000 000000011000000 000000 00
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHHhCCeEEEEecCCHHHHHHHhhccCCCCEEEeCh--hhHHHHhhcCCCCCCCCCCh
Q psy7164 1912 SQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTP--QIISDFMLNIPLSDLPGVGH 1989 (2307)
Q Consensus 1912 t~~l~~~~~~~~~lA~~IR~~I~~~TG~tvSVGIA~NklLAKLASr~AKPnGq~~L~p--e~v~~fL~~LPV~dLpGIG~ 1989 (2307)
......|+.++.++|++||++|+++||||||||||+||+|||||++.+|||||++|.+ +.+.+||+++||++|||||+
T Consensus 213 ~~~~~~fg~~~~~la~~IR~~I~~~~Glt~S~GIa~nk~LAKlAs~~~KP~g~~vl~~~~~~v~~fL~~lpv~~l~GiG~ 292 (459)
T 1t94_A 213 LQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGK 292 (459)
T ss_dssp CCCEEECCSSHHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHHTTTTCEEECCSSHHHHHHHHTTCBGGGCTTSCH
T ss_pred ccchhhccCCHHHHHHHHHHHHHHHhCCeEEEeecccHHHHHHHhhccCCCCEEEecCcHHHHHHHHHcCCHHhcCCcCH
Confidence 0001113446899999999999999999999999999999999999999999999998 57999999999999999999
Q ss_pred hHHHHHHhcCCccchhhhcCCHHHHHhhhCcchHHHHHHHhcCCCCCccccccCCcccEEEEecCcCCCCHHHHHHHHHH
Q psy7164 1990 SLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQ 2069 (2307)
Q Consensus 1990 ~~~~kL~~lGI~TigDL~~lp~~~L~~~fG~k~G~~L~~~arGiD~~~V~~~~~rKSIs~e~nfg~r~~~~eel~~~L~~ 2069 (2307)
++.++|+.+||+||+||++++ ..|.++||.+.|.+||+.++|+|++++.+..++|||+++.+|+. +.+.+++..+|..
T Consensus 293 ~~~~~L~~lGI~T~gdL~~~~-~~L~~~fG~~~~~~l~~~a~G~d~~~v~~~~~~kSi~~~~tf~~-~~~~~~l~~~l~~ 370 (459)
T 1t94_A 293 VTEKMLKALGIITCTELYQQR-ALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSE-INKAEEQYSLCQE 370 (459)
T ss_dssp HHHHHHHHTTCCBHHHHHHTH-HHHHHHSCHHHHHHHHHHHTTCCCSCC---C--CCEEEEEEEEE-ECCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHhhH-HHHHHHhChHhHHHHHHHHcCCCCcccCCCCCCcceeeeeecCC-CCCHHHHHHHHHH
Confidence 999999999999999999985 78999999778999999999999999998889999999999997 8999999999999
Q ss_pred HHHHHHHHHHhccccceEEEEEEEEecCCCcccccccccCceeeeecceecc--CcCChhHHHHHHHHHHhhhcC----C
Q psy7164 2070 LAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL--PIYERPLIITYFLLLVRSAEA----P 2143 (2307)
Q Consensus 2070 La~eL~~RLr~~~~~~r~LTLkL~~R~~~Ap~ep~K~lGhG~cD~~skS~~L--pt~~~~~L~~aA~~lL~~i~~----~ 2143 (2307)
||.+|+.||++.++.+++|+|++++..+ +..+++.++ |+.+...|+++|..+|++++. .
T Consensus 371 L~~~l~~rL~~~~~~~~~vtl~l~~~~~---------------~~~srs~~l~~~t~~~~~i~~~a~~ll~~~~~~~~~~ 435 (459)
T 1t94_A 371 LCSELAQDLQKERLKGRTVTIKLKNVNF---------------EVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPH 435 (459)
T ss_dssp HHSSTTCCCC---CCCSCEEEEEEETTC---------------CEEEECC-CCCCCCC--CHHHHHHHHHHHHHSSSTTS
T ss_pred HHHHHHHHHHHhCCCcceEEEEEEECCC---------------ceeeEEEECCCccCCHHHHHHHHHHHHHHHHhhccCC
Confidence 9999999999999999999999998432 234666666 566788999999999999874 3
Q ss_pred CCCceEEeeeeccccc
Q psy7164 2144 REASKFLGHGVCDYIT 2159 (2307)
Q Consensus 2144 ~~~yr~~Gv~l~dl~s 2159 (2307)
+..++.+||.+.++.+
T Consensus 436 ~~~ir~lGv~~~~l~~ 451 (459)
T 1t94_A 436 PLRLRLMGVRISSFPN 451 (459)
T ss_dssp CCCEEEEEEEECC---
T ss_pred CCcEEEEEEEEccCcC
Confidence 5579999999987755
No 22
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=100.00 E-value=1.2e-60 Score=608.43 Aligned_cols=406 Identities=19% Similarity=0.258 Sum_probs=306.6
Q ss_pred CCCCCCEEEEEeCCcchhhhhhhcCCCCCCCcEEEEeCCCCCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCc
Q psy7164 1609 PSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMF 1688 (2307)
Q Consensus 1609 ~~~~~r~I~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~ 1688 (2307)
...+.|+|+||||||||||||++++|+|+++||||+++ +.|+||||+||+|||++||+
T Consensus 26 ~~~p~r~I~hiD~d~FyAsvE~~~~p~l~~~Pv~v~~~----------------------~~via~sy~AR~~GI~~~~~ 83 (520)
T 3mfi_A 26 YESSLACIAHIDMNAFFAQVEQMRCGLSKEDPVVCVQW----------------------NSIIAVSYAARKYGISRMDT 83 (520)
T ss_dssp GGSTTCCEEEEEETTHHHHHHHHHTTCCTTSCEEEEET----------------------TEEEEECHHHHTTTCCTTCB
T ss_pred ccCCCCEEEEEecccHHHHHHHHhCccccCCcEEEecC----------------------CEEEEeCHHHHHcCCCCCCc
Confidence 34568999999999999999999999999999999973 24789999999999999999
Q ss_pred HHHHHHhCCCcEEe-----------------------------c-----CChhHHHHHHHHHHHHHHhcccceeeccccc
Q psy7164 1689 VGHALKKCPNLKIV-----------------------------P-----YDFEGYKEVSYCLYNLIASLTLNIEAVSLYT 1734 (2307)
Q Consensus 1689 l~~A~kLCPdL~iv-----------------------------p-----ydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~ 1734 (2307)
+.+|+++||+|+++ | ++|+.|+++|++|+++|.+|++.||++||
T Consensus 84 ~~~A~~~CP~l~~v~~~v~~~ge~~~~y~~~~~~~~~~~~~~~~~~~~k~~~~~Yr~~S~~i~~il~~~~~~vE~~SI-- 161 (520)
T 3mfi_A 84 IQEALKKCSNLIPIHTAVFKKGEDFWQYHDGCGSWVQDPAKQISVEDHKVSLEPYRRESRKALAIFKWACDLVERASI-- 161 (520)
T ss_dssp HHHHHTTCTTCEEEECEEEETTCSCEECCTTCSTTCSCTTSCCCTTSEEEECHHHHHHHHHHHHHHHHHCSCEEEEET--
T ss_pred HHHHHHhCccceEeeeeeeecccccccccccccccccccccccCcccccCCHHHHHHHHHHHHHHHHHhCCCeEEecc--
Confidence 99999999999986 3 38999999999999999999999999999
Q ss_pred chhhhccCcchhhhhHHhhhhhhhhhcccccCCCcccchhhhcccccccccCCCCCCcccccccccccccccccccchhh
Q psy7164 1735 NESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSL 1814 (2307)
Q Consensus 1735 DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~ 1814 (2307)
||+|||| +..+...+ +.++
T Consensus 162 DEaflDl-----t~~~~~~l------~~~~-------------------------------------------------- 180 (520)
T 3mfi_A 162 DEVFLDL-----GRICFNML------MFDN-------------------------------------------------- 180 (520)
T ss_dssp TEEEEEC-----HHHHHHHH------HHCS--------------------------------------------------
T ss_pred ceEEEEc-----Ccchhhcc------cccc--------------------------------------------------
Confidence 9999987 10000000 0000
Q ss_pred HHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhcccchHHHHHHHhhcccccccchhhHHHHHHHhHHHh-h------c
Q psy7164 1815 QEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQ-S------A 1887 (2307)
Q Consensus 1815 ~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ss~~~~lY~d~s~rv~-~------~ 1887 (2307)
+++. |.. ... ...+.++...+. + .
T Consensus 181 --------~~~~-----~~~----------------------------------~~~--~~~~~~l~~~~~~g~~~~~~~ 211 (520)
T 3mfi_A 181 --------EYEL-----TGD----------------------------------LKL--KDALSNIREAFIGGNYDINSH 211 (520)
T ss_dssp --------SCEE-----ETT----------------------------------EEH--HHHTHHHHHHHHHTCCCTTSE
T ss_pred --------cccc-----ccc----------------------------------ccc--ccchhhhhhcccccccccccc
Confidence 0000 000 000 001111111100 0 0
Q ss_pred ccCCCCCCCc-e--eeeecCCc--eEEcCccchhccCCCHHHHHHHHHHHHHHHhCCeEEEEecCCHHHHHHHhhccCCC
Q psy7164 1888 MKHKPSSESK-I--VSAVSCDE--MYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPN 1962 (2307)
Q Consensus 1888 l~~~~~~~Sp-~--Ve~~SiDE--aflDlt~~l~~~~~~~~~lA~~IR~~I~~~TG~tvSVGIA~NklLAKLASr~AKPn 1962 (2307)
+...|..... . -..+..++ ...|+.+.. + ..+.++|++||++|+++||||||||||+||+|||||++.+||+
T Consensus 212 ~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~-~~~~~ia~~IR~~I~~~tGlt~SvGIa~nK~LAKlAs~~~KP~ 288 (520)
T 3mfi_A 212 LPLIPEKIKSLKFEGDVFNPEGRDLITDWDDVI--L-ALGSQVCKGIRDSIKDILGYTTSCGLSSTKNVCKLASNYKKPD 288 (520)
T ss_dssp EECCCGGGGGCCCCSEECCTTCCCSCCSHHHHH--H-HHHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHTTSCSS
T ss_pred ccccccchhcccccccccccccccccccccccc--c-chHHHHHHHHHHHHHHHhCCcEEEEEeCCHHHHHHHhcccCCC
Confidence 0000000000 0 00000000 000111111 1 1367999999999999999999999999999999999999999
Q ss_pred CEEEeChhhHHHHhhc--CCCCCCCCCChhHHHHHHhc-CC---ccc-----------hhhhcCCHHHHHhhhCc-----
Q psy7164 1963 GQFHLTPQIISDFMLN--IPLSDLPGVGHSLLFKLNSL-GA---QTC-----------GDLQNISLKRLQNEVGN----- 2020 (2307)
Q Consensus 1963 Gq~~L~pe~v~~fL~~--LPV~dLpGIG~~~~~kL~~l-GI---~Ti-----------gDL~~lp~~~L~~~fG~----- 2020 (2307)
||++|.++++.+||++ +||++|||||++++++|+++ || +|+ +||++++...|+++||.
T Consensus 289 G~~vi~~~~~~~fL~~~~lPV~~l~GIG~~t~~~L~~llGI~~~~ti~~i~~l~~~t~~dL~~~~~~~L~~~fG~~~~~~ 368 (520)
T 3mfi_A 289 AQTIVKNDCLLDFLDCGKFEITSFWTLGGVLGKELIDVLDLPHENSIKHIRETWPDNAGQLKEFLDAKVKQSDYDRSTSN 368 (520)
T ss_dssp EEEECCGGGHHHHHTSSSCCGGGSTTCSSHHHHHHHHHTTCCSSSHHHHHHHHSCSCHHHHHHHHHHHHHSTTCC---CC
T ss_pred CeEEcChHHHHHHhhccCCcHHHhcCCCHHHHHHHHHhcCCCcccchhhhhhccCCCHHHHHhcCHHHHHHhcCcccccc
Confidence 9999999999999998 99999999999999999998 99 664 88888999999999996
Q ss_pred -------chHHHHHHHhcCCCCCccccccCCcccEEEEecCcC-CCCHHHHHHHHHHHHHHHHHHHHhcc------ccce
Q psy7164 2021 -------KNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIR-FQNNQEMETFLKQLAGEVEKRLEEVK------MKGK 2086 (2307)
Q Consensus 2021 -------k~G~~L~~~arGiD~~~V~~~~~rKSIs~e~nfg~r-~~~~eel~~~L~~La~eL~~RLr~~~------~~~r 2086 (2307)
+.|.+||++|+|+|+++|.+..++|||+++.+|+.+ +.+.+++..+|..||.+|+.||++.+ +.|+
T Consensus 369 ~d~~~~g~~g~~L~~~arGid~~~V~~~~~~KSi~~~~tf~~~~i~~~~~l~~~L~~la~~l~~rLr~~~~~~~~~~~~r 448 (520)
T 3mfi_A 369 IDPLKTADLAEKLFKLSRGRYGLPLSSRPVVKSMMSNKNLRGKSCNSIVDCISWLEVFCAELTSRIQDLEQEYNKIVIPR 448 (520)
T ss_dssp CCTTCHHHHHHHHHHHTTTCCCCCCCCCCSCSCEEEEEECCTTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred ccchhhhHHHHHHHHHhCCCCCCCCCCCCCCCceeeEEEcCCCCcCCHHHHHHHHHHHHHHHHHHHHhcccccccceeee
Confidence 799999999999999999999999999999999986 89999999999999999999999984 9999
Q ss_pred EEEEEEEEecCCCcccccccccCceeeeecceeccCcCChhHHHHHHHHHHhhhcCCCCCceEEeeeeccccccccCCcc
Q psy7164 2087 CITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPM 2166 (2307)
Q Consensus 2087 ~LTLkL~~R~~~Ap~ep~K~lGhG~cD~~skS~~Lpt~~~~~L~~aA~~lL~~i~~~~~~yr~~Gv~l~dl~skq~~L~l 2166 (2307)
+|+|++++..+ +..++|.+++.++.
T Consensus 449 tvtl~ir~~df---------------~~~trs~~l~~pt~---------------------------------------- 473 (520)
T 3mfi_A 449 TVSISLKTKSY---------------EVYRKSGPVAYKGI---------------------------------------- 473 (520)
T ss_dssp EEEEEEECTTC---------------CEEEEEEECCCCCG----------------------------------------
T ss_pred EEEEEEEeCCC---------------CcceEEEECCCCCc----------------------------------------
Confidence 99999987322 24566666643320
Q ss_pred CcchHHHHHHHHHHHHHhcCCC-----CccEEEeeeeccCcccccc
Q psy7164 2167 YISQASQILKEVLFIVNKLKVD-----PVELRGIGIQVSKLEHQSK 2207 (2307)
Q Consensus 2167 ~t~~~~~I~~e~~~L~r~~g~~-----~~~lRgIGIq~skL~~~S~ 2207 (2307)
.++...|++++..||+++..+ ...+|+|||++++|+..+.
T Consensus 474 -~~~~~~I~~~a~~Ll~~~~~~~~~~~~~~iRliGV~~s~Le~~~~ 518 (520)
T 3mfi_A 474 -NFQSHELLKVGIKFVTDLDIKGKNKSYYPLTKLSMTITNFDIIDL 518 (520)
T ss_dssp -GGHHHHHHHHHHHHHHHHHHHTTTSSCSSCSEEEEEEEEEEEEEC
T ss_pred -cCCHHHHHHHHHHHHHHHhhhcccccCCceeEEEEEEeCCEecCC
Confidence 034455666666666665542 5789999999999987654
No 23
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=100.00 E-value=5.1e-61 Score=588.69 Aligned_cols=298 Identities=16% Similarity=0.225 Sum_probs=255.9
Q ss_pred hhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccC
Q psy7164 37 QKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQET 116 (2307)
Q Consensus 37 q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~ 116 (2307)
.+++++|||||||||||||++. +||+|+|+|||+||+||++ +|+|+.|.|+|+. +
T Consensus 7 l~~~~lE~vrkRPgmYiGs~~~-----------------------~gl~~~v~ElvdNsiDe~~-~g~a~~I~V~i~~-~ 61 (369)
T 3cwv_A 7 LPGGIVENVRKRPGMYCGDVGE-----------------------YGLHHLVYFLLDVAYEEAR-RGECRDVVLEVGG-D 61 (369)
T ss_dssp --CCHHHHHHHSTHHHHSCSSH-----------------------HHHHHHHHHHHHHHHHHHH-TTCCSEEEEEECT-T
T ss_pred CCccHhHHHHhCCceEEcCCCC-----------------------chHHHHHHHHHhhhHhHHh-hCCCCEEEEEEeC-C
Confidence 3567799999999999999984 8999999999999999997 5899999999997 5
Q ss_pred CeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCC----CccccccCCCc
Q psy7164 117 NTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYND----EEDKVTGGRNG 192 (2307)
Q Consensus 117 gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~----~~yk~sgGlhG 192 (2307)
|+|+|+|||||||+ |++| +|||| |||++ +.|+++|
T Consensus 62 g~I~V~DnGrGIp~-----------e~v~-~lhag-------------------------sKf~~~~~~~~y~vsG---- 100 (369)
T 3cwv_A 62 GSIALFCTSRTVTA-----------ENLV-RVATG-------------------------AGFLGRPPGDGWGWDS---- 100 (369)
T ss_dssp SCEEEEEEESSCCH-----------HHHH-HHHTT-------------------------TTGGGSSCCCSTTTTS----
T ss_pred CEEEEEECCCCcCH-----------hHee-eeecC-------------------------CCcCCCcccccccccC----
Confidence 89999999999998 6788 99998 88877 7899994
Q ss_pred ccccccccccceeEEEEEeecccEEEEEEeecCCC------cCCCccccCCCCCCCcEEEEEeCcccccccccCHHHHHH
Q psy7164 193 YGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMS------KVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDL 266 (2307)
Q Consensus 193 VGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~------~~~~~~i~~~~~~~GT~VtF~PD~~iF~~~~f~~d~l~~ 266 (2307)
|+|+|||||++|+|++++ +|+.|+|.|.+|++ ..+...++. ..++||+|+|+||+++|++..|+++.|.
T Consensus 101 -Gls~vnalSs~l~v~t~r--~g~~~~~~~~~G~~~~~~~~~~~l~~~g~-~~~~GT~V~f~Pd~~~F~~~~~e~~~l~- 175 (369)
T 3cwv_A 101 -MLVVSLALSSRYQVDIWA--DGRQWRVMGEHGHPQGEGAAVTPMEPMPV-SAERGVRVHFVPDATIFEVLAFDRARLS- 175 (369)
T ss_dssp -SHHHHHHTEEEEEEEEEE--TTEEEEEEEETTEECTTCEEESSCCCCSS-CCSEEEEEEEEECTTTCSCCCCCHHHHH-
T ss_pred -HHHHHHHhhceEEEEEEE--CCCEEEEEEeCCcccccccccCCceEecc-cCCCCCEEEEEECHHHhCCccccHHHHH-
Confidence 899999999999999974 68899999999986 333333332 3579999999999999988899999875
Q ss_pred HHHHHHHhhccCCCcEEEeccccCCc-------cchHHHHHHHhccC-CCCCCCeEEEEEecCCeeEEEEeecCCCce--
Q psy7164 267 ITRRAYDAAASTKDVKVFLNGEKLPV-------KNFQDYVKLYTDRQ-DEDGDPVKIIYENVNPRWEVAIAPSDRGFQ-- 336 (2307)
Q Consensus 267 l~~Rl~dlA~LnpGLkI~lnder~~~-------~G~~dYV~~~~~~~-~~~~~~~~ii~e~~~~~~EVAl~~s~~~y~-- 336 (2307)
+|++++|+|||||+|+|+|++.+. +||++||.+++... ....+++++..+.++..||+|++|++ +|+
T Consensus 176 --~rl~~lA~lnpgv~i~l~d~~~~~~~~f~~~gGl~~~v~~l~~~~~~~~~~~i~~~~~~~~i~ve~a~~~~~-~~~~~ 252 (369)
T 3cwv_A 176 --RRCNELAALAPGLRVSFADLQRGERTLWHLPGGVAQWAHVLTEARPQLHPEPVVFDFTWDGLRVQCALQWCE-DEDST 252 (369)
T ss_dssp --HHHHHHHHHSTTCEEEEEETTTTEEEEEECTTHHHHHHHHHHTTSCBSSSSCEEEEEEETTEEEEEEEEEBS-SSCCE
T ss_pred --HHHHHHcCcCCCcEEEEEeCCCCeeEEEEeCchHHHHHHHHhcCCcccCCCcEEEEEecCCEEEEEEEEecC-CCCee
Confidence 999999999999999999998432 58999999988432 23345666655666788999999996 664
Q ss_pred EEEeeCCccCCCCcchhhHHHHHHHHHHHHHHHHhccccccceeeccccccccccchhhhhcccccccccccccccCChH
Q psy7164 337 QVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPF 416 (2307)
Q Consensus 337 ~~SFVNnI~T~eGGTHvdgfr~aLtr~i~~~~kkk~k~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~dvreg~~~vk~~ 416 (2307)
++||||+|+|.+||||++||+.||++++++|++ +.+ ..++++
T Consensus 253 ~~sFVN~i~t~~GGTH~~g~~~al~~a~~~~~k-~~~-------------------------------------~~l~~~ 294 (369)
T 3cwv_A 253 LLSFANAVRTVRHGAHVKGVTQALRGALAKLSG-ETR-------------------------------------GAFPWA 294 (369)
T ss_dssp EEEEETTEECTTCBHHHHHHHHHHHHHHHHHHT-CCG-------------------------------------GGSCHH
T ss_pred EEEEECCEEeCCCCCHHHHHHHHHHHHHHHHHh-hcC-------------------------------------CCcCHH
Confidence 589999999999999999999999999999992 111 247889
Q ss_pred hHhcceEEEEEeecCCCc--ccchhhhhhhcc
Q psy7164 417 QVKNHIWIFINCLIVNPT--FDSQTKENMTLQ 446 (2307)
Q Consensus 417 dIre~L~~~Vsvki~nP~--FegQTKekL~~~ 446 (2307)
|||+||++||||+++||+ |+||||+||++.
T Consensus 295 dvregl~avisvk~~~P~~~FegQTK~kL~~~ 326 (369)
T 3cwv_A 295 RVAQGLTAIVAVSGPRRQMAFAGPTKELLAIP 326 (369)
T ss_dssp HHTTTEEEEEEEECCGGGCCBSSTTCCSBCCT
T ss_pred HHhhccEEEEEeccCCcchhccccccchhcCH
Confidence 999999999999999999 999999999864
No 24
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C*
Probab=100.00 E-value=2.3e-59 Score=531.73 Aligned_cols=165 Identities=31% Similarity=0.491 Sum_probs=151.0
Q ss_pred ccccccccccCCCCCCCcEEEEEecCccchhcccCcccccccc--eeeccCCcccchhhccchHHHhhcHHHHHHHHHhc
Q psy7164 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPLRGKLLNVREATHKQILENAEINNLVKILG 532 (2307)
Q Consensus 455 lpKL~Dc~~a~tk~~~~ceLfIvEGDSA~~~a~sGsak~gRD~--qaIlPLRGKiLNV~ka~~~ki~~N~EI~~Li~aLG 532 (2307)
++||+||+ ++++++|||||||||||| |||++|||+ |||||||||||||++++.+||++|+||++||+|||
T Consensus 34 pgKLaDc~---~kd~~~~eLflvEGDSAg-----GsakqgRdr~~QailPLRGKiLNv~ka~~~ki~~N~Ei~~ii~alG 105 (268)
T 3k9f_C 34 SGKLTPAQ---SKNPAKNELYLVEGDSAG-----GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIG 105 (268)
T ss_dssp --CCBCCS---SCCTTSCEEEEEECHHHH-----HHHHHSSCTTTEEEEEECSSCCCTTSSCHHHHHTCHHHHHHHHHHC
T ss_pred CccccCcc---cCCCCceeEEEeeeeccc-----ccccccCccccccccccCCcchhhhcCCHHHHhhCHHHHHHHHHhC
Confidence 34999995 789999999999999999 677899996 99999999999999999999999999999999999
Q ss_pred cccCCCcCCcCCCCCCCCCcEEecccCCCCCCchhHHHHHHHHHhhhhhhcCCcEEEecCcEEEEEeCCe----EEEEeC
Q psy7164 533 LQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKARE----ELSFYS 608 (2307)
Q Consensus 533 lg~~~~y~~~~d~~~LRYgkIiImTDaDvDG~HI~~LLltff~r~~p~Li~~G~vy~~~tPL~kv~~gk~----~~~fys 608 (2307)
|+++++ ||+++||||||||||||||||+||++|||||||||||+||++||||+|+||||+|++||+ +.|||+
T Consensus 106 ~g~g~~----~d~~~LRY~kIiIMTDADvDGsHI~~LLltff~r~~p~Li~~G~vyia~pPLykv~~gk~~~~~~~Y~y~ 181 (268)
T 3k9f_C 106 AGVGAD----FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWT 181 (268)
T ss_dssp SCC--C----CCCC-CCCSEEEEECCSSHHHHHHHHHHHHHHHHTSHHHHHTTCEEEECCCSEEEEC-CGGGCCEEEECS
T ss_pred CCCCcc----ccccccccceEEEecCCCcccccchhHHHHHHHHHhHHHHhCCcEEEecCCeEEEEeCCCcccceEEEeC
Confidence 999965 589999999999999999999999999999999999999999999999999999999874 479999
Q ss_pred hHHHHHHHHHhcCCCccCcEEeccc
Q psy7164 609 LPEFEEWKEETTNWHTYKIKYYKVV 633 (2307)
Q Consensus 609 ~~e~~~~~~~~~~~~~~~ikryKGL 633 (2307)
++|+++|++++. ++|+|||||||
T Consensus 182 e~E~~~~~~~~~--~~~~IqryKGL 204 (268)
T 3k9f_C 182 DGELEELRKQFG--KGATLQRYKGL 204 (268)
T ss_dssp HHHHHHHHHHSC--TTCEEEECCCG
T ss_pred HHHHHHHHHhcC--CCCCceEecCC
Confidence 999999998853 67999999999
No 25
>3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A*
Probab=100.00 E-value=4e-58 Score=517.22 Aligned_cols=160 Identities=29% Similarity=0.435 Sum_probs=133.9
Q ss_pred CCCCCCCcEEEEEecCccchhcccCcccccccc--eeeccCCcccchhhccchHHHhhcHHHHHHHHHhccccCCCcCCc
Q psy7164 465 GTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTV 542 (2307)
Q Consensus 465 ~tk~~~~ceLfIvEGDSA~~~a~sGsak~gRD~--qaIlPLRGKiLNV~ka~~~ki~~N~EI~~Li~aLGlg~~~~y~~~ 542 (2307)
.++++++|||||||||||| |||++|||+ |||||||||||||++++.+||++|+||++||+|||||+|++
T Consensus 13 ~~~d~~~~eLflvEGDSAg-----Gsak~gRdr~~QailPLRGKiLNv~ka~~~ki~~N~Ei~~ii~alG~~~g~~---- 83 (242)
T 3m4i_A 13 DKTDPRKSELYVVEGDSAG-----GSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDE---- 83 (242)
T ss_dssp --CCGGGEEEEEEESSSCC--------------CEEEEEEECC--------CHHHHTTCHHHHHHHHHHCSCSGGG----
T ss_pred cccChhheEEEEEeccccc-----chhhhccccccccccccCCcchhhhhcCHHHHhhCHHHHHHHHHhCCCcCcc----
Confidence 4789999999999999999 788999996 99999999999999999999999999999999999999965
Q ss_pred CCCCCCCCCcEEecccCCCCCCchhHHHHHHHHHhhhhhhcCCcEEEecCcEEEEEeCC-eEEEEeChHHHHHHHHHhc-
Q psy7164 543 EDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAR-EELSFYSLPEFEEWKEETT- 620 (2307)
Q Consensus 543 ~d~~~LRYgkIiImTDaDvDG~HI~~LLltff~r~~p~Li~~G~vy~~~tPL~kv~~gk-~~~~fys~~e~~~~~~~~~- 620 (2307)
||+++||||||||||||||||+||+||||||||||||+||++||||+|+||||+|++|| ++.||||++|+++|++++.
T Consensus 84 ~d~~~LRY~kIiIMTDADvDGsHI~~LLltff~r~~p~Li~~G~vyia~pPL~kv~~gk~~~~y~ys~~E~~~~~~~~~~ 163 (242)
T 3m4i_A 84 FDIGKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLK 163 (242)
T ss_dssp CCGGGCCCSEEEEECCSSHHHHHHHHHHHHHHHHHCTHHHHTTCEEEECCCSEEECCTTSCCEEESSHHHHHHHHHHHHH
T ss_pred ccccccccceEEEecCCCcccccchhHHHHHHHHHhHHHHhcCcEEEecCceEEEEeCCccEEEeCCHHHHHHHHHHhhh
Confidence 58999999999999999999999999999999999999999999999999999999999 8999999999999998763
Q ss_pred CCCcc----CcEEeccc
Q psy7164 621 NWHTY----KIKYYKVV 633 (2307)
Q Consensus 621 ~~~~~----~ikryKGL 633 (2307)
+.++| +|||||||
T Consensus 164 ~~~~~~k~~~IqryKGL 180 (242)
T 3m4i_A 164 AGKKINKEDGIQRYKGL 180 (242)
T ss_dssp HTCCCCTTTSEEECSCG
T ss_pred cCCccccccccceEcCc
Confidence 22345 99999999
No 26
>3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli}
Probab=100.00 E-value=9.6e-54 Score=511.21 Aligned_cols=171 Identities=27% Similarity=0.471 Sum_probs=129.9
Q ss_pred ccccccc-ccccccccCCCCCCCcEEEEEecCccchhcccCcccccccc--eeeccCCcccchhhccchHHHhhcHHHHH
Q psy7164 450 FGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPLRGKLLNVREATHKQILENAEINN 526 (2307)
Q Consensus 450 ~~~k~lp-KL~Dc~~a~tk~~~~ceLfIvEGDSA~~~a~sGsak~gRD~--qaIlPLRGKiLNV~ka~~~ki~~N~EI~~ 526 (2307)
+....+| ||+||+ ++++++|||||||||||| ||||+|||+ |||||||||||||+|++.+||++|+||++
T Consensus 14 ~~~~~lpgKLaDc~---~kd~~~~eLflvEGDSAg-----Gsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~n~Ei~~ 85 (420)
T 3nuh_B 14 LDLAGLPGKLADCQ---ERDPALSELYLVEGDSAG-----GSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 85 (420)
T ss_dssp ----CCBTTBBCCS---CCSTTSCEEEEEEHHHHH-----HHHHHHSCTTTEEEEEECC-------------CCCHHHHH
T ss_pred cccCCCCccccccc---cCCccceeEEEEeccccc-----cccccccccccccccccCCcchhHhhccHHHHhcCHHHHH
Confidence 3334466 999995 789999999999999999 677899996 99999999999999999999999999999
Q ss_pred HHHHhccccCCCcCCcCCCCCCCCCcEEecccCCCCCCchhHHHHHHHHHhhhhhhcCCcEEEecCcEEEEEeCCeEEEE
Q psy7164 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSF 606 (2307)
Q Consensus 527 Li~aLGlg~~~~y~~~~d~~~LRYgkIiImTDaDvDG~HI~~LLltff~r~~p~Li~~G~vy~~~tPL~kv~~gk~~~~f 606 (2307)
||+|||||+++++ ||+++||||||||||||||||+||+||||||||||||+||++||||+|+||||||++||++.||
T Consensus 86 ii~alG~~~g~~~---~~~~~LRY~kIiIMTDaDvDGsHIr~LLltff~r~~p~Li~~G~vyia~pPL~kv~~gk~~~y~ 162 (420)
T 3nuh_B 86 LITALGCGIGRDE---YNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYI 162 (420)
T ss_dssp HHHHHC----------------CCSEEEECCCSSTTTTHHHHHHHHHHHHHCHHHHHTTCEEEECCCSEEEEETTEEEEE
T ss_pred HHHHhCCCCCcCC---CChhhcCcCeEEEecCCCCCcccchhHHHHHHHHHhHHHHHCCcEEEecCceEEEEcCCeEEEe
Confidence 9999999999643 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eChHHHHHHHHHhcCCCccCcEEecc
Q psy7164 607 YSLPEFEEWKEETTNWHTYKIKYYKV 632 (2307)
Q Consensus 607 ys~~e~~~~~~~~~~~~~~~ikryKG 632 (2307)
||++|+++|+.+.. ..++.+....|
T Consensus 163 ~~~~e~~~~~~~~a-l~~~~l~~~~~ 187 (420)
T 3nuh_B 163 KDDEAMDQYQISIA-LDGATLHTNAS 187 (420)
T ss_dssp CCHHHHHHHHHHHH-HTTEEEEESSS
T ss_pred CCHHHHHHHHhhcc-ccCeEEEeCCC
Confidence 99999999998754 24566655444
No 27
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=100.00 E-value=9.6e-51 Score=465.65 Aligned_cols=205 Identities=22% Similarity=0.356 Sum_probs=172.9
Q ss_pred CChhhhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeEE
Q psy7164 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIK 109 (2307)
Q Consensus 30 ~~~~~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I~ 109 (2307)
++. ..||+|+++||||+||+|||||+++ .+||+|+|+|||+||+||++ +|+|+.|.
T Consensus 5 y~~-~~i~~l~~le~vr~rPgmYiG~~~~----------------------~~gl~~lv~ElvdNsiDea~-~g~~~~I~ 60 (220)
T 4duh_A 5 YDS-SSIKVLKGLDAVRKRPGMYIGDTDD----------------------GTGLHHMVFEVVDNAIDEAL-AGHCKEII 60 (220)
T ss_dssp -----------CHHHHHHSTHHHHCCSSS----------------------SHHHHHHHHHHHHHHHHHHH-HSCCCEEE
T ss_pred cCh-hHcEEechhHHHHhCCceEECCCCC----------------------cccHHHHHHHHHHHHHHHHh-cCCCCEEE
Confidence 455 5789999999999999999999985 27999999999999999998 48999999
Q ss_pred EEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCccccccC
Q psy7164 110 ITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGG 189 (2307)
Q Consensus 110 V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgG 189 (2307)
|+|+. +|+|+|+|||||||+++|+++|+|++|+|||+|||| ||||++.|++|||
T Consensus 61 V~i~~-~g~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag-------------------------~Kfd~~~yk~SgG 114 (220)
T 4duh_A 61 VTIHA-DNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAG-------------------------GKFDDNSYKVSGG 114 (220)
T ss_dssp EEECT-TSCEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCS-------------------------SCCCTTC------
T ss_pred EEEeC-CCcEEEEECCcCcccccccccCcchhhheeeecccC-------------------------CCcCCCccccccC
Confidence 99998 589999999999999999999999999999999999 9999999999999
Q ss_pred CCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCCCCCCCcEEEEEeCccccccc-ccCHHHHHHHH
Q psy7164 190 RNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMT-SLDKDMVDLIT 268 (2307)
Q Consensus 190 lhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~~~~~GT~VtF~PD~~iF~~~-~f~~d~l~~l~ 268 (2307)
+||||+|+|||||++|+|++++ +|+.|+|.|.+|++..+...++. +.++||+|+|+||+++|.+. .|++++|.
T Consensus 115 lhGvG~svvNAlS~~l~v~v~r--~g~~~~~~f~~G~~~~~l~~~g~-~~~~GT~V~F~Pd~~~F~~~~~~~~~~l~--- 188 (220)
T 4duh_A 115 LHGVGVSVVNALSQKLELVIQR--EGKIHRQIYEHGVPQAPLAVTGE-TEKTGTMVRFWPSLETFTNVTEFEYEILA--- 188 (220)
T ss_dssp --CCCHHHHHHTEEEEEEEEEE--TTEEEEEEEETTEESSSCEEEEE-CSCCEEEEEEEECTTTCCSSCSCCHHHHH---
T ss_pred ccceecchhcccccceEEEEEE--CCEEEEEEecCCcCcCCceeccc-cCCCCcEEEEEECHHHhCCcccCCHHHHH---
Confidence 9999999999999999999974 79999999999998665544443 47899999999999999987 89999875
Q ss_pred HHHHHhhccCCCcEEEeccccC
Q psy7164 269 RRAYDAAASTKDVKVFLNGEKL 290 (2307)
Q Consensus 269 ~Rl~dlA~LnpGLkI~lnder~ 290 (2307)
+|++++|||||||+|+|+|+|.
T Consensus 189 ~rlrelA~ln~gv~i~l~der~ 210 (220)
T 4duh_A 189 KRLRELSFLNSGVSIRLRDKRD 210 (220)
T ss_dssp HHHHHHHHHCTTSEEEEEETTT
T ss_pred HHHHHHHhcCCCCEEEEEccCC
Confidence 9999999999999999999984
No 28
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=100.00 E-value=1.8e-50 Score=464.46 Aligned_cols=205 Identities=26% Similarity=0.371 Sum_probs=170.3
Q ss_pred CCChhhhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeE
Q psy7164 29 KMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCI 108 (2307)
Q Consensus 29 ~~~~~~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I 108 (2307)
.++. ..||+|+++||||+||+|||||++. +||+|+|+|||+||+||++ +|+|+.|
T Consensus 10 ~y~~-~~i~~l~~le~vr~RPgmYiGs~~~-----------------------~gl~~~v~Eiv~NaiD~~~-~g~~~~I 64 (226)
T 4emv_A 10 NYND-DAIQVLEGLDAVRKRPGMYIGSTDG-----------------------AGLHHLVWEIVDNAVDEAL-SGFGDRI 64 (226)
T ss_dssp --------CCCBCTHHHHHCHHHHHSCSSH-----------------------HHHHHHHHHHHHHHHHHHH-TTCCSEE
T ss_pred cCCh-hhcEEcchhHHHhhCCceEEcCCCc-----------------------ccHHHHHHHHHHHHHHHHh-cCCCcEE
Confidence 4666 5789999999999999999999984 7999999999999999998 5799999
Q ss_pred EEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCcccccc
Q psy7164 109 KITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTG 188 (2307)
Q Consensus 109 ~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sg 188 (2307)
.|+|+. +|+|+|+|||||||+++| ++|+|++|+|||+|||| ||||++.|++||
T Consensus 65 ~V~i~~-~g~i~V~DnG~GIp~~~h-~~~~~~~e~v~t~lhag-------------------------~Kfd~~~yk~Sg 117 (226)
T 4emv_A 65 DVTINK-DGSLTVQDHGRGMPTGMH-AMGIPTVEVIFTILHAG-------------------------GKFGQGGYKTSG 117 (226)
T ss_dssp EEEECT-TSCEEEEECSSCCCCSBC-GGGCBHHHHHHHCBC---------------------------------------
T ss_pred EEEEeC-CCeEEEEEcCCCcccccc-ccCceehheeEEeeccc-------------------------CccCccceEecc
Confidence 999998 589999999999999999 89999999999999999 999999999999
Q ss_pred CCCcccccccccccceeEEEEEeecccEEEEEEeecC-CCcCCCccccCCC-CCCCcEEEEEeCcccccccccCHHHHHH
Q psy7164 189 GRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDN-MSKVTSPEIKSGS-KDDFTKITFTPDLTKFKMTSLDKDMVDL 266 (2307)
Q Consensus 189 GlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g-~~~~~~~~i~~~~-~~~GT~VtF~PD~~iF~~~~f~~d~l~~ 266 (2307)
|+||||+|+|||||++|+|+|++ +|+.|+|.|.+| ++..+..+++.+. .++||+|+|+||+++|++..|++++|.
T Consensus 118 GlhGvG~svvNALS~~l~v~v~r--~g~~~~q~f~~Gg~~~~~l~~ig~~~~~~~GT~V~F~PD~~iF~~~~~~~~~l~- 194 (226)
T 4emv_A 118 GLHGVGSSVVNALSSWLEVEITR--DGAVYKQRFENGGKPVTTLKKIGTALKSKTGTKVTFMPDATIFSTTDFKYNTIS- 194 (226)
T ss_dssp CGGGCCHHHHHHTEEEEEEEEEE--TTEEEEEEEETTTEESSCSEEEEECCTTCCEEEEEEEECTTTCSCCCCCHHHHH-
T ss_pred ccccccchhhhhcccceEEEEEe--CCcEEEEEECCCCEEcCCceEecccCCCCCCeEEEEEECHHHcCCCCcCHHHHH-
Confidence 99999999999999999999974 899999999999 6655555555443 689999999999999999999999875
Q ss_pred HHHHHHHhhccCCCcEEEeccccC
Q psy7164 267 ITRRAYDAAASTKDVKVFLNGEKL 290 (2307)
Q Consensus 267 l~~Rl~dlA~LnpGLkI~lnder~ 290 (2307)
+|++++|||||||+|+|+|+|.
T Consensus 195 --~rlrelA~ln~gv~i~l~der~ 216 (226)
T 4emv_A 195 --ERLNESAFLLKNVTLSLTDKRT 216 (226)
T ss_dssp --HHHHHHHHHHCSCEEEEEETTT
T ss_pred --HHHHHHhhcCCCCEEEEEecCC
Confidence 9999999999999999999985
No 29
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=100.00 E-value=1.5e-49 Score=493.49 Aligned_cols=249 Identities=18% Similarity=0.208 Sum_probs=204.2
Q ss_pred CCCCCCccccCCCCeeeecCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCC--CCCcccCCCC---CcEE--------
Q psy7164 657 IGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP--LPMKPWYKNF---KGEI-------- 723 (2307)
Q Consensus 657 g~~iEP~vlppiiP~LLVNGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~--~~l~P~ykGf---~G~I-------- 723 (2307)
|+.+||+||||+|||||||||+|||||||||||||||+|||+||+++|+|+++ .+|+|||+|| +|.|
T Consensus 171 g~~~EP~vlp~~iP~lLvNGs~GIavGmATnIPphNl~Evi~a~~~li~~~~~~~~~l~~~i~GPDFPtGgii~~~~gi~ 250 (514)
T 2inr_A 171 DTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIK 250 (514)
T ss_dssp SSSEEESSCCCSSCHHHHHCEECC--CCCCEECCBCHHHHHHHHHHHHHCTTCCHHHHTTTCCSBCCTTCCEEECHHHHH
T ss_pred CCcCCCcccCccccHHHhcCCCceecceecCCCCCCHHHHHHHHHHHhcCCCCCHHHHHhhCcCCCCCCCcEEECchhhH
Confidence 99999999999999999999999999999999999999999999999999987 4799999996 6655
Q ss_pred --EEecCcEEEEEEEEEEEc----CCeEEEEecCCccchHHHHHHHHHHhcCCCcCc-----------------------
Q psy7164 724 --DYCGDSRFVVNGEIAILD----DDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE----------------------- 774 (2307)
Q Consensus 724 --~~tg~g~~~vrG~~~~~~----~~~IvITELPy~v~t~~~~e~La~Lv~~~~~~~----------------------- 774 (2307)
|.+|+|+|++||++++++ +++|+|||||||+||++|+|+|++|++++++.+
T Consensus 251 ~~y~tGrG~i~~rg~~~ie~~~~~~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd~~gvrivIelk~~~ 330 (514)
T 2inr_A 251 KAYESGKGRIIVRSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELKKDV 330 (514)
T ss_dssp HHHHHSEEEEEEECEEEECC----CCEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEECCBTTBCCEEEEC----
T ss_pred HHhhcCCceEEEEEEEEEEecCCCccEEEEEecCceeeHHHHHHHHHHHHhcCCcCccchhhhcCCCCceEEEEEECCCc
Confidence 247899999999999874 578999999999999999999999998886432
Q ss_pred ---------cccCCCC----------------CCCHHHHHHHHHHHHHHHHHHHHHh-hhh-------HHHhhcc-cCCC
Q psy7164 775 ---------VHPGPGR----------------KSHPRPIAPKSYKIDDDSEEEEIEE-VFH-------DNELAKP-QKTG 820 (2307)
Q Consensus 775 ---------y~~t~~~----------------~~sl~eIL~eF~~~Rl~~y~rr~e~-l~n-------i~~li~~-~~~d 820 (2307)
|++|+.| ++++++||++|++||+++|+||+++ |.+ +++++.. ..-|
T Consensus 331 ~~e~vl~~L~k~t~Lq~s~~~Nm~al~~g~p~~~~l~~iL~~f~~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~~id 410 (514)
T 2inr_A 331 NSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILD 410 (514)
T ss_dssp --CHHHHHHTTSSTTEEEEEEECEEEETTEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred CHHHHHHHHHHhcCceeeeeeeEEEeeCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334433 3999999999999999999999998 322 4555544 2223
Q ss_pred chHHHHHHHhhccccccccccCCCCCCChhhHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHcc--Cc---hhhHH
Q psy7164 821 PQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKK--AP---TDLWS 895 (2307)
Q Consensus 821 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~el~~ei~~L~~~--s~---~~lw~ 895 (2307)
.+....+.. ....++...+++.|.+++.||+|||+|+|||||++|++||++|+++++++|++|+++ ++ .++|+
T Consensus 411 ~vI~iIr~s--~~~~~a~~~L~~~f~lse~qa~~IL~m~L~rLT~~e~~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~ 488 (514)
T 2inr_A 411 KVIELIRSS--KNKRDAKENLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIK 488 (514)
T ss_dssp HHHHHHHHC--CSHHHHHHHHHTTSSCCHHHHHHHHTCCGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHcC--CCHHHHHHHHHHhcCCCHHHHHHHHhchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 333332221 112334445666899999999999999999999999999999999999999999998 55 57789
Q ss_pred HHHHHHHHHhCC
Q psy7164 896 DDLDALREKDKI 907 (2307)
Q Consensus 896 ~DL~el~k~l~k 907 (2307)
+||++++++|..
T Consensus 489 ~el~~i~~~yg~ 500 (514)
T 2inr_A 489 EELNEIKKKFKS 500 (514)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHcCC
Confidence 999999988753
No 30
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=100.00 E-value=6.4e-49 Score=452.74 Aligned_cols=214 Identities=24% Similarity=0.455 Sum_probs=182.9
Q ss_pred CCEEEEEeCCcchhhhhhhcCCCCCCCcEEEEeCCC--CCCcccccccccchhhHHhhhhcccCCHHHHHcCCCCCCcHH
Q psy7164 1613 EPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKG--NSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVG 1690 (2307)
Q Consensus 1613 ~r~I~HvDmD~FFasVe~~~~PeL~~kPVaV~~~~~--~~s~~~~~~~~~~~~~~~~~~~i~scNY~AR~~GVk~GM~l~ 1690 (2307)
..+|+||||||||||||++.+|+|+++||||++..+ ++ + +.|++|||+||++||++||++.
T Consensus 5 ~~~~~hiD~d~FyasvE~~~~p~L~~~Pv~V~~~~~~~~~----~-------------g~V~a~s~~Ar~~GV~~gm~~~ 67 (221)
T 1im4_A 5 HHIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKT----S-------------GAVATANYEARKLGVKAGMPII 67 (221)
T ss_dssp SCCEEEEEETTHHHHHHHHHSGGGTTSCEEEEEEC----C----C-------------EEEEEECHHHHTTTCCTTCBHH
T ss_pred ceEEEEEecCcHHHHHHHHHCccccCCcEEEEecCCcCCC----C-------------CEEEECCHHHHHcCCCCCCcHH
Confidence 468999999999999999999999999999996311 11 1 2467899999999999999999
Q ss_pred HHHHhCCCcEEecCChhHHHHHHHHHHHHHHhcccceeecccccchhhhccCcchhhhhHHhhhhhhhhhcccccCCCcc
Q psy7164 1691 HALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEP 1770 (2307)
Q Consensus 1691 ~A~kLCPdL~ivpydfe~Yr~~S~~~y~iL~~~~~~ie~~Si~~DEafldi~p~~i~~e~l~~~~~~~~~~~~~~n~~~~ 1770 (2307)
+|+++||+|+++|+||+.|+++|++|++++.+|+|
T Consensus 68 ~A~~lcP~l~v~~~~~~~Y~~~s~~i~~~l~~~tp--------------------------------------------- 102 (221)
T 1im4_A 68 KAMQIAPSAIYVPMRKPIYEAFSNRIMNLLNKHAD--------------------------------------------- 102 (221)
T ss_dssp HHHHHCTTSEEEECCHHHHHHHHHHHHHHHHTTCS---------------------------------------------
T ss_pred HHHHHCCCeEEECCCHHHHHHHHHHHHHHHHHhCC---------------------------------------------
Confidence 99999999999999999999999999988876644
Q ss_pred cchhhhcccccccccCCCCCCcccccccccccccccccccchhhHHHHHHhhhhcccCCCCCChhhhhHhhhhhhhhhcc
Q psy7164 1771 LAQDIICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERH 1850 (2307)
Q Consensus 1771 ~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~ 1850 (2307)
T Consensus 103 -------------------------------------------------------------------------------- 102 (221)
T 1im4_A 103 -------------------------------------------------------------------------------- 102 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchHHHHHHHhhcccccccchhhHHHHHHHhHHHhhcccCCCCCCCceeeeecCCceEEcCccchh-ccCCCHHHHHHHH
Q psy7164 1851 LNPIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQ-ELSLTPLQFASYL 1929 (2307)
Q Consensus 1851 ~~~~~~~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l~~~~~~~Sp~Ve~~SiDEaflDlt~~l~-~~~~~~~~lA~~I 1929 (2307)
.||++|+||+|+|+|++.+ +++ ++.++|++|
T Consensus 103 -----------------------------------------------~ve~~siDE~~lDvt~~~~~l~~-~~~~la~~i 134 (221)
T 1im4_A 103 -----------------------------------------------KIEVASIDEAYLDVTNKVEGNFE-NGIELARKI 134 (221)
T ss_dssp -----------------------------------------------EEEEEETTEEEEECTTTTTTCHH-HHHHHHHHH
T ss_pred -----------------------------------------------ceEEecCCeEEEEecchhhhccC-CHHHHHHHH
Confidence 3456677777777777766 555 678999999
Q ss_pred HHHHHHHhCCeEEEEecCCHHHHHHHhhccCCCCEEEeChhhHHHHhhcCCCCCCCCCChhHHHHHHhcCCccchhhhcC
Q psy7164 1930 RETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNI 2009 (2307)
Q Consensus 1930 R~~I~~~TG~tvSVGIA~NklLAKLASr~AKPnGq~~L~pe~v~~fL~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~l 2009 (2307)
|++|+++|||+||||||+||++||||++.+||+|++++.++++.+||+++||++|||||+++.++|+++||+|++||+++
T Consensus 135 r~~i~~~~Gl~~svGia~nk~lAKlas~~~Kp~g~~~~~~~~~~~~L~~lpv~~l~giG~~~~~~L~~~Gi~TigdL~~~ 214 (221)
T 1im4_A 135 KQEILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSK 214 (221)
T ss_dssp HHHHHHHHCCCEEEEEESSHHHHHHHHHHTCSSCEEECCGGGHHHHHHTCBGGGSTTCCHHHHHHHHHTTCCBTTC----
T ss_pred HHHHHHHhCCeEEEEeCCCHHHHHHHHhhcCCCCEEEECHHHHHHHHHhCCcccccCCCHHHHHHHHHcCCCcHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHh
Q psy7164 2010 SLKRLQN 2016 (2307)
Q Consensus 2010 p~~~L~~ 2016 (2307)
|+..|++
T Consensus 215 ~~~~L~~ 221 (221)
T 1im4_A 215 NYNELEK 221 (221)
T ss_dssp -------
T ss_pred CHHHhhC
Confidence 9988764
No 31
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=100.00 E-value=1.6e-49 Score=492.23 Aligned_cols=249 Identities=17% Similarity=0.185 Sum_probs=204.6
Q ss_pred CCCCCCccccCCCCeeeecCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCC--CCCcccCCCC---CcEE--------
Q psy7164 657 IGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP--LPMKPWYKNF---KGEI-------- 723 (2307)
Q Consensus 657 g~~iEP~vlppiiP~LLVNGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~--~~l~P~ykGf---~G~I-------- 723 (2307)
|+.+||+||||+|||||||||+|||||||||||||||+|||+||+++|+||++ .+|+|||+|| +|.|
T Consensus 147 g~~~EP~vlp~~iP~lLvNGs~GIavGmAT~IPphNl~Evi~a~~~~i~~~~~~~~~l~~~i~gPDFPtGgii~~~~gi~ 226 (496)
T 2nov_A 147 DTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIK 226 (496)
T ss_dssp SSSEEESSCCCSSCHHHHHCEECCC-CCCCEECCCCHHHHHHHHHHHHHCTTCCHHHHTTTCCSCCCTTCCEECCHHHHH
T ss_pred CCcCCCeecCccCcHHHhcCCCchhcccccCCCCCCHHHHHHHHHHHhcCCCCChHHHHhhccCCCCCCCCEEeCchHHH
Confidence 99999999999999999999999999999999999999999999999999987 4799999996 6655
Q ss_pred --EEecCcEEEEEEEEEEEc----CCeEEEEecCCccchHHHHHHHHHHhcCCCcCc-----------------------
Q psy7164 724 --DYCGDSRFVVNGEIAILD----DDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE----------------------- 774 (2307)
Q Consensus 724 --~~tg~g~~~vrG~~~~~~----~~~IvITELPy~v~t~~~~e~La~Lv~~~~~~~----------------------- 774 (2307)
|.+|+|+|++||++++++ +++|+|||||||+||++|+|+|++|++++++.+
T Consensus 227 ~~y~tGrG~~~~rg~~~ie~~~~g~~~IvITElPy~v~~~~lie~I~~lv~~kki~~I~d~rDesd~~gvrivI~lk~~~ 306 (496)
T 2nov_A 227 KAYETGKGRVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDA 306 (496)
T ss_dssp HHHHHSEEECCEECEEEEEECSTTCEEEEEEECCTTCCHHHHHHHTTHHHHTTSCC---CCEEC-----CCEEC----CC
T ss_pred HHhhcCCceEEEEEEEEEEecCCCCCEEEEEeCCCCCcHHHHHHHHHHHHhcCCcCccchhhhcCCCCceEEEEEECCCC
Confidence 358999999999999885 678999999999999999999999999887432
Q ss_pred ---------cccCCCC----------------CCCHHHHHHHHHHHHHHHHHHHHHh-hhh-------HHHhhcc-cCCC
Q psy7164 775 ---------VHPGPGR----------------KSHPRPIAPKSYKIDDDSEEEEIEE-VFH-------DNELAKP-QKTG 820 (2307)
Q Consensus 775 ---------y~~t~~~----------------~~sl~eIL~eF~~~Rl~~y~rr~e~-l~n-------i~~li~~-~~~d 820 (2307)
|++|+.| ++++++||++|++||+++|+||+++ |.+ +++++.. ..-|
T Consensus 307 ~~~~vl~~L~k~t~Lq~s~~~Nm~al~~g~p~~~~l~~iL~~f~~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~~id 386 (496)
T 2nov_A 307 NTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLIRVISILD 386 (496)
T ss_dssp CCTTHHHHHHHSSTTEECCEEECEEEETTEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred CHHHHHHHHHHhcCcceeeeeEEEEEeCCeEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2233333 3999999999999999999999998 322 4445444 1222
Q ss_pred chHHHHHHHhhccccccccccCCCCCCChhhHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHcc--Cc---hhhHH
Q psy7164 821 PQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKK--AP---TDLWS 895 (2307)
Q Consensus 821 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~el~~ei~~L~~~--s~---~~lw~ 895 (2307)
.+....+. .....++...+++.|.+++.||+|||+|+|||||++|++||++|+++++++|++|+++ ++ .++|+
T Consensus 387 ~vI~iIr~--s~~~~~a~~~L~~~f~lse~qa~~IL~m~L~rLt~~e~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~ 464 (496)
T 2nov_A 387 EVIALIRA--SENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMK 464 (496)
T ss_dssp HHHHHHTT--SSSHHHHHSSCCC-CCCCHHHHHHHHTCBGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred hHHHHHHh--CCCHHHHHHHHHHhcCCCHHHHHHHHhChHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 23322221 1112344456777899999999999999999999999999999999999999999987 55 47789
Q ss_pred HHHHHHHHHhCC
Q psy7164 896 DDLDALREKDKI 907 (2307)
Q Consensus 896 ~DL~el~k~l~k 907 (2307)
+||++++++|..
T Consensus 465 ~el~~i~~~y~~ 476 (496)
T 2nov_A 465 KELREVKKKFAT 476 (496)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhCC
Confidence 999999988753
No 32
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=100.00 E-value=7.5e-49 Score=482.04 Aligned_cols=248 Identities=16% Similarity=0.160 Sum_probs=202.6
Q ss_pred CCCCCCccccCCCCeeeecCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCC------CCCcccCCCC---C-cEEE--
Q psy7164 657 IGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDP------LPMKPWYKNF---K-GEID-- 724 (2307)
Q Consensus 657 g~~iEP~vlppiiP~LLVNGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~------~~l~P~ykGf---~-G~I~-- 724 (2307)
|+.+||+||||+|||||||||+|||||||||||||||+|||+||+++|+|+++ ++|+||++|+ + |.|.
T Consensus 128 g~~~EP~vlp~~iP~lLvNGs~GIavGmAT~IPphNl~Evi~a~~~~i~~~~~~~~~~~~~l~~~i~gPDFPTGG~I~g~ 207 (470)
T 3ilw_A 128 GRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGS 207 (470)
T ss_dssp SSSEEESSCCCSSCHHHHHCEECSSTTCSCEECCCCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHCCSCCCTTCCEEECS
T ss_pred CCccCCCcccccccHHHhcCCCccccceecCCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHhhcccCCCCCCCcEEECc
Confidence 99999999999999999999999999999999999999999999999999988 5678888883 4 4443
Q ss_pred -------EecCcEEEEEEEEEEE----cCCeEEEEecCCccchHHHHHHHHHHhcCCCcCc------c------------
Q psy7164 725 -------YCGDSRFVVNGEIAIL----DDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE------V------------ 775 (2307)
Q Consensus 725 -------~tg~g~~~vrG~~~~~----~~~~IvITELPy~v~t~~~~e~La~Lv~~~~~~~------y------------ 775 (2307)
.+|+|+|++||+++++ ++++|+||||||++||++|+|+|++|++++++.+ +
T Consensus 208 ~gi~~~y~tGrG~i~~rg~~~ie~~~~~~~~ivItElPy~v~~~~lie~i~~l~~~kki~~I~d~rDe~sd~~gvrivI~ 287 (470)
T 3ilw_A 208 QGTADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLRIVIE 287 (470)
T ss_dssp HHHHHHHHHSEEEEEEECEEEEEECTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTSCTTEEEEEECCBTTTBCCEEEE
T ss_pred cchHHHHhcCCceEEEEEEEEEEeccCCCCEEEEEeCCCccCHHHHHHHHHHHHhcCCCCccccccccCCCCCceEEEEE
Confidence 4799999999999875 4678999999999999999999999998887532 2
Q ss_pred ---------------ccCCCC----------------CCCHHHHHHHHHHHHHHHHHHHHHh-hhh-------HHHhhcc
Q psy7164 776 ---------------HPGPGR----------------KSHPRPIAPKSYKIDDDSEEEEIEE-VFH-------DNELAKP 816 (2307)
Q Consensus 776 ---------------~~t~~~----------------~~sl~eIL~eF~~~Rl~~y~rr~e~-l~n-------i~~li~~ 816 (2307)
++++.+ +++++|||++|++||+++|+||+++ |.+ +++++..
T Consensus 288 lk~~~~~~~~l~~L~k~t~Lq~s~~~Nm~al~~g~p~~~~l~eiL~~f~~~R~~~~~rR~~~~L~k~~~r~hilegl~~a 367 (470)
T 3ilw_A 288 IKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKA 367 (470)
T ss_dssp ECTTSCHHHHHHHHHHHSTTEEEEEEECEEEETTEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHhccchheeceeeeEEECCeeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222 3999999999999999999999998 322 4444444
Q ss_pred -cCCCchHHHHHHHhhccccccccccCCCCCCChhhHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHcc--Cc---
Q psy7164 817 -QKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKK--AP--- 890 (2307)
Q Consensus 817 -~~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~el~~ei~~L~~~--s~--- 890 (2307)
..-|.+....+.+. ...++...+++.|.+++.|++|||+|+|+|||++|++||++|+++|+++|++|+.+ ++
T Consensus 368 ~~~iD~vI~iIr~s~--~~~~a~~~L~~~f~lse~Qa~aIl~mrL~rLt~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~ 445 (470)
T 3ilw_A 368 LDALDEVIALIRASE--TVDIARAGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQ 445 (470)
T ss_dssp HHTHHHHHHHHHHCS--SHHHHHHHHHHHHTCCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHhCC--CHHHHHHHHHHhcCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 22223333332211 12344455667789999999999999999999999999999999999999999987 43
Q ss_pred hhhHHHHHHHHHHHhC
Q psy7164 891 TDLWSDDLDALREKDK 906 (2307)
Q Consensus 891 ~~lw~~DL~el~k~l~ 906 (2307)
.++|+++|.+++++|.
T Consensus 446 ~~~i~~el~~i~~~yg 461 (470)
T 3ilw_A 446 RGIVRDELAEIVDRHG 461 (470)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 4567889999988885
No 33
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=100.00 E-value=9.3e-48 Score=470.56 Aligned_cols=250 Identities=12% Similarity=0.140 Sum_probs=189.5
Q ss_pred CCCCCCccccCCCCeeeecCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCCC--CCc-----ccCC------CCCcEE
Q psy7164 657 IGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPL--PMK-----PWYK------NFKGEI 723 (2307)
Q Consensus 657 g~~iEP~vlppiiP~LLVNGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~~--~l~-----P~yk------Gf~G~I 723 (2307)
|+.+||+||||+|||||||||+|||||||||||||||+|||+||+++|+|+++. +|+ |+|| |++|++
T Consensus 121 g~~~EP~vlp~~iP~lLvNGs~GIAvGmATnIPpHNl~EVida~~~li~~~~~~~~eLm~~i~gPDfPtgg~i~g~~gi~ 200 (500)
T 3lpx_A 121 GTEHIPAVMPTRVPNLLVNGTSGIAVGMATNIPPHNLTEVINACLALIDNSELTFEEILEHIPGPDFPTAGIISGRAGIE 200 (500)
T ss_dssp SSSEEESSCCCSSCHHHHHCC-------CCBCCCCCHHHHHHHHHHHHHCTTCCHHHHHHHCCSCCCTTCCEECCHHHHH
T ss_pred ccccCHhhcCccccHhhccCCCccccceeccCCCCCHHHHHHHHHHHhcCCCCCHHHHHhcCCCCCCCCCceEeCccchH
Confidence 999999999999999999999999999999999999999999999999999873 333 3333 444444
Q ss_pred --EEecCcEEEEEEEEEEE-----cCCeEEEEecCCccchHHHHHHHHHHhcCCCcCc----------------------
Q psy7164 724 --DYCGDSRFVVNGEIAIL-----DDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE---------------------- 774 (2307)
Q Consensus 724 --~~tg~g~~~vrG~~~~~-----~~~~IvITELPy~v~t~~~~e~La~Lv~~~~~~~---------------------- 774 (2307)
|.+|+|+|++||+++++ ++++|+|||||||||+++|+|+|++|++++++.+
T Consensus 201 ~~y~tGrG~i~~ra~~~ie~~~~~~~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd~~gvrivIelk~~ 280 (500)
T 3lpx_A 201 EAYRTGRGKIKIRARASIDVHETTGKETIIVHELPYQVNKARLIEKMAELVKDKRLEGISALRDESDKDGMRMVIEIKRG 280 (500)
T ss_dssp HHHHHSEEEEEEECEEEEEECTTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTSSCSEEEEEECCCSSCCCEEEEECTT
T ss_pred HHhhcCCceEEEEEEEEEEecccCCCceEEEEecCCccCHHHHHHHHHHHHhcCCCCccccchhcCCCCceEEEEEECCC
Confidence 45899999999998876 3568999999999999999999999999887542
Q ss_pred ----------cccCCCC----------------CCCHHHHHHHHHHHHHHHHHHHHHh------------------hhhH
Q psy7164 775 ----------VHPGPGR----------------KSHPRPIAPKSYKIDDDSEEEEIEE------------------VFHD 810 (2307)
Q Consensus 775 ----------y~~t~~~----------------~~sl~eIL~eF~~~Rl~~y~rr~e~------------------l~ni 810 (2307)
|++|+.+ ++++++||++|++||+++|+||+++ +.|+
T Consensus 281 ~~~~~~l~~L~k~T~Lq~sf~~Nm~al~~g~pk~~~l~eiL~~f~~~R~evv~rR~~~~L~ka~~R~hileGl~~a~~~i 360 (500)
T 3lpx_A 281 EVGEVVLNNLYKLTQMQVSFGLNMVALTNGQPKIFNIKEMLEAFVLHRREVVTRRTIFELRKARDRAHILEGLSIALANI 360 (500)
T ss_dssp SCHHHHHHHHHHHSTTEEEEEEECEEESSSSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCHHHHHHHHHHhcCCceeeeeeEEEEECCEeEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 2222222 3999999999999999999999877 5569
Q ss_pred HHhhcc--cCCCchHHHHHHHhhc-------cc---cc---cc-c-------ccCCCCCCChhhHHHHHcCccccccHHH
Q psy7164 811 NELAKP--QKTGPQLERQERQAAE-------GE---DD---EA-G-------SQTQEEEDPDKDYDYLLGMTFWSLTMER 867 (2307)
Q Consensus 811 ~~li~~--~~~d~~~a~~~~~~~~-------~~---~~---~~-~-------~~~~~~~~~~~q~dyIL~M~L~rLT~ee 867 (2307)
+++|++ .+.++..|+....... .. .. .. . .....|.+++.|++|||+|+|+|||++|
T Consensus 361 DevI~iIR~s~~~~~Ak~~L~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lse~Qa~aIl~mrL~rLt~le 440 (500)
T 3lpx_A 361 DPIIEMIKNSNNRKESEEKLISQGWELGNVANMLSEAGNDAARPEWLEPEYGIRDGLYYLTAEQAKAIVDLQLYKLSGME 440 (500)
T ss_dssp HHHHTTTTTCSSHHHHHHHHHSSCCCCC-----------CTTSCTTCCCC----------CHHHHHHHHTCBGGGGSHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhcccccchhhhhhhhhcccccccccccccccccccccCCCHHHHHHHHHhHHHHhhhHH
Confidence 999999 5666666655544320 00 00 00 0 0112488999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcc--CchhhH---HHHHHHHHHHhC
Q psy7164 868 KNELLKKRDDKMTELNILKKK--APTDLW---SDDLDALREKDK 906 (2307)
Q Consensus 868 ~~kL~~E~~el~~ei~~L~~~--s~~~lw---~~DL~el~k~l~ 906 (2307)
++||++|+++|.++|++|+.+ ++..+| ++||.+++++|.
T Consensus 441 ~~ki~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~~g 484 (500)
T 3lpx_A 441 HDKILSEYKALLDLIAELMHILATPARLMEVICEELVAIRDEFG 484 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998 666665 556666666664
No 34
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=100.00 E-value=4.9e-47 Score=483.98 Aligned_cols=242 Identities=14% Similarity=0.125 Sum_probs=194.9
Q ss_pred CCCCCCccccCCCCeeeecCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCCC--CC-----cccCCCCCcEE------
Q psy7164 657 IGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPL--PM-----KPWYKNFKGEI------ 723 (2307)
Q Consensus 657 g~~iEP~vlppiiP~LLVNGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~~--~l-----~P~ykGf~G~I------ 723 (2307)
|+.+||+||||+|||||||||+|||||||||||||||+|||+||+++|+|+++. +| .|||||+ |.|
T Consensus 123 g~~~EP~vlp~~iP~lLvNGa~GIavGmaT~IPphNl~Evi~a~~~li~~~~~~~~~l~~~i~gPdFptg-G~I~~~~~g 201 (716)
T 1zvu_A 123 GTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTE-AEIITSRAE 201 (716)
T ss_dssp SSSEEESSCCCSSCHHHHHCCCSCCSSCSCBCCCBCHHHHHHHHHHHHHCTTCCHHHHTTTCCSBCCSSS-SEECSCTTH
T ss_pred CCcCCchhccccccHHHHcCCCccccceecCCCCCCHHHHHHHHHHHhcCCCCCHHHHHhhCCCCCCCCc-eEEecCchH
Confidence 999999999999999999999999999999999999999999999999999863 23 3788874 766
Q ss_pred ----EEecCcEEEEEEEEEEEcCCeEEEEecCCccchHHHHHHHHHHhcCCCcCc-------------------------
Q psy7164 724 ----DYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDE------------------------- 774 (2307)
Q Consensus 724 ----~~tg~g~~~vrG~~~~~~~~~IvITELPy~v~t~~~~e~La~Lv~~~~~~~------------------------- 774 (2307)
|.+|+|+|++||++++++ ++|+|||||||+||++|+|+|++|++++++.+
T Consensus 202 I~~aY~tGrG~i~~rg~~~ie~-~~ivITElPy~v~~~~lie~I~~l~~~kki~~I~d~rDes~~~~gvrivI~lk~~~~ 280 (716)
T 1zvu_A 202 IRKIYENGRGSVRMRAVWKKED-GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRV 280 (716)
T ss_dssp HHHHHHHTEEEEEEECEEEEET-TEEEEEECCTTCCHHHHHHHHHHHHHTTSCTTEEEEEECCCSSSTTCEEEEESSSSC
T ss_pred HHHHhhcCCceEEEEEEEEEEC-CEEEEEeCCCCCCHHHHHHHHHHHHhcCCCccccchhhccCCCCcEEEEEEECccCC
Confidence 358999999999999876 78999999999999999999999998876322
Q ss_pred ---------cccCCCC-----------------CCCHHHHHHHHHHHHHHHHHHHHHh-hhh-------HHHhhcc-cCC
Q psy7164 775 ---------VHPGPGR-----------------KSHPRPIAPKSYKIDDDSEEEEIEE-VFH-------DNELAKP-QKT 819 (2307)
Q Consensus 775 ---------y~~t~~~-----------------~~sl~eIL~eF~~~Rl~~y~rr~e~-l~n-------i~~li~~-~~~ 819 (2307)
|++|+.+ ++++++||++|++||+++|+||+++ |.+ +++++.+ ..-
T Consensus 281 ~~~~vl~~L~k~T~Lq~sf~~Nm~~l~~~g~p~~~~l~~iL~~f~~~R~~v~~rR~~~~L~k~~~r~hiLegl~ia~~~i 360 (716)
T 1zvu_A 281 DMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNI 360 (716)
T ss_dssp CHHHHHHHHHHHSTTEEEEEEECEEECTTSCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHhcchhheeeceeEEEccCCeeeECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhH
Confidence 1112211 3999999999999999999999988 222 4444444 222
Q ss_pred CchHHHHHHHhhccccccccccCCCCCCChhhHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHcc--CchhhH---
Q psy7164 820 GPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKK--APTDLW--- 894 (2307)
Q Consensus 820 d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~el~~ei~~L~~~--s~~~lw--- 894 (2307)
|.+.+.++.+.. ....+++.|.+++.|++|||+|+|||||++|++||++|+++|+++|++|+.+ ++..+|
T Consensus 361 DeVI~iIR~s~~-----~k~~L~~~f~lse~QA~aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~l~~iL~~~~~l~~~i 435 (716)
T 1zvu_A 361 DEVIEIIRNEDE-----PKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLL 435 (716)
T ss_dssp HHHHHHHHHSSS-----HHHHHHHSTTCCTTHHHHHHTCCGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHhcCc-----hHHHHHHhcCCCHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 333333332211 2344666789999999999999999999999999999999999999999997 665555
Q ss_pred HHHHHHHHHHh
Q psy7164 895 SDDLDALREKD 905 (2307)
Q Consensus 895 ~~DL~el~k~l 905 (2307)
+++|.+++++|
T Consensus 436 ~~EL~~i~~ky 446 (716)
T 1zvu_A 436 KKELQADAQAY 446 (716)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55666555555
No 35
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=100.00 E-value=6.5e-42 Score=388.80 Aligned_cols=192 Identities=18% Similarity=0.308 Sum_probs=154.4
Q ss_pred cchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCCeEE
Q psy7164 41 QLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTIS 120 (2307)
Q Consensus 41 ~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~gsIs 120 (2307)
|+|||||||+|||||+++ +++|+|||+||+|+++ +|+|+.|.|+|+. +|+|+
T Consensus 1 gle~vr~rpgmyig~~~~--------------------------~~~v~Elv~NsiDa~~-~g~a~~I~V~i~~-~g~i~ 52 (201)
T 3fv5_A 1 GLEPVRRRPGMYTDTTRP--------------------------NHLGQEVIDNSVDEAL-AGHAKRVDVILHA-DQSLE 52 (201)
T ss_dssp CCHHHHHCGGGTSCTTST--------------------------HHHHHHHHHHHHHHHH-TTCCSEEEEEECT-TSCEE
T ss_pred CchhhccCCccEECCCCh--------------------------hhhhHHHHHHHHHHHh-cCCCcEEEEEEeC-CCEEE
Confidence 689999999999999862 7899999999999998 4789999999986 58999
Q ss_pred EEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCccccccCCCccccccccc
Q psy7164 121 VWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNI 200 (2307)
Q Consensus 121 V~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGVGasvvNA 200 (2307)
|+|||+|||++.|+++++|++|+||+++||+ |||+++.|++|+|+||+|++++||
T Consensus 53 V~DnG~GIp~~~~~~~~~~~~e~i~~~~hat-------------------------sK~~~~~~~~s~GfrGeglssina 107 (201)
T 3fv5_A 53 VIDDGRGMPVDIHPEEGVPAVELILCRLHAG-------------------------GKFSNKNYQFSGGLHGVGISVVNA 107 (201)
T ss_dssp EEECSSCCCCSBCTTCSSBHHHHHHHCC----------------------------------------------CHHHHH
T ss_pred EEECCCCcCcccccccCcchhheeeeeeccc-------------------------cCcCCCcccccCcccceecchhhc
Confidence 9999999999999999999999999999998 999999999999999999999999
Q ss_pred ccceeEEEEEeecccEEEEEEeecCCCcCCCccccCCC-CCCCcEEEEEeCcccccccccCHHHHHHHHHHHHHhhccCC
Q psy7164 201 FSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGS-KDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTK 279 (2307)
Q Consensus 201 lS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~~-~~~GT~VtF~PD~~iF~~~~f~~d~l~~l~~Rl~dlA~Lnp 279 (2307)
||++|+|++++ +|+.|+|.|.+|++..+...++.+. ..+||+|+|+||+++|++..|+++.|. +|++++|++||
T Consensus 108 lS~~l~v~t~~--~g~~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~Pdr~~F~~~~~e~~~i~---~~l~~lA~l~p 182 (201)
T 3fv5_A 108 LSKRVEVNVRR--DGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLT---HVLKAKAVLCP 182 (201)
T ss_dssp TEEEEEEEEEE--TTEEEEEEEETTEEEEEEEEEEECCTTCCEEEEEEEECGGGSSCCCCCHHHHH---HHHHHHHHHST
T ss_pred ccceEEEEEEe--cCceEEEEEeCCEEcccceecccCCCCCCCeEEEEEECHHHcCCCccCHHHHH---HHHHHHHHhCC
Confidence 99999999974 7889999999998755544444432 679999999999999988899999885 89999999999
Q ss_pred CcEEEeccccC
Q psy7164 280 DVKVFLNGEKL 290 (2307)
Q Consensus 280 GLkI~lnder~ 290 (2307)
||+|+|+++|.
T Consensus 183 gv~~~l~~~r~ 193 (201)
T 3fv5_A 183 GVEITFKDEIN 193 (201)
T ss_dssp TCEEEEEETTT
T ss_pred CCEEEEEecCC
Confidence 99999999984
No 36
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=100.00 E-value=4.1e-41 Score=380.86 Aligned_cols=178 Identities=25% Similarity=0.324 Sum_probs=162.1
Q ss_pred hhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeEEEEEE
Q psy7164 34 KIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVN 113 (2307)
Q Consensus 34 ~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~ 113 (2307)
..||+|+++||||+||||||||++. +||+|+++|||+||+||++ +|+|+.|.|+|+
T Consensus 5 ~~i~~l~~le~vr~RPgmYiGs~~~-----------------------~gl~~~v~Elv~NsiD~~~-ag~~~~I~V~i~ 60 (198)
T 3ttz_A 5 GQIQVLEGLEAVRKRPGMYIGSTSE-----------------------RGLHHLVWEIVDNSIDEAL-AGYANQIEVVIE 60 (198)
T ss_dssp HHHHHHHHHHHHHHSHHHHHSCSSH-----------------------HHHHHHHHHHHHHHHHHHH-TTSCCEEEEEEE
T ss_pred hHeEEecchHHHhcCCCcEECCCCC-----------------------cchHHHHHHHHHHHHhHHh-cCCCcEEEEEEe
Confidence 5899999999999999999999984 8999999999999999998 589999999999
Q ss_pred ccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCccccccCCCcc
Q psy7164 114 QETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGY 193 (2307)
Q Consensus 114 ~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGV 193 (2307)
.+ |+|+|+|||||||++.|+.++++.+|+||+
T Consensus 61 ~~-g~i~V~DnG~Gip~~~h~~~~~~~~e~i~t----------------------------------------------- 92 (198)
T 3ttz_A 61 KD-NWIKVTDNGRGIPVDIQEKMGRPAVEVILT----------------------------------------------- 92 (198)
T ss_dssp GG-GEEEEEECSSCCCCSBCTTTSSBHHHHHHH-----------------------------------------------
T ss_pred CC-CeEEEEECCCCccccccCcCCCccccccce-----------------------------------------------
Confidence 85 799999999999999999999998887541
Q ss_pred cccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCCCCCCCcEEEEEeCcccc-cccccCHHHHHHHHHHHH
Q psy7164 194 GAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKF-KMTSLDKDMVDLITRRAY 272 (2307)
Q Consensus 194 GasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~~~~~GT~VtF~PD~~iF-~~~~f~~d~l~~l~~Rl~ 272 (2307)
+|||||||++|+|++++ +|+.|+|.|.+|++..+.++++. ..++||+|+|+||+++| ++..|++++|. +|++
T Consensus 93 -~SvVNALS~~l~v~v~r--~g~~~~~~f~~G~~~~~l~~i~~-~~~~GT~V~F~Pd~~iF~~~~~~~~~~l~---~rlr 165 (198)
T 3ttz_A 93 -SSVVNALSQDLEVYVHR--NETIYHQAYKKGVPQFDLKEVGT-TDKTGTVIRFKADGEIFTETTVYNYETLQ---QRIR 165 (198)
T ss_dssp -TCHHHHTEEEEEEEEEE--TTEEEEEEEETTEESSCCEEEEE-CSCCEEEEEEEECTTTCCSCCCCCHHHHH---HHHH
T ss_pred -eEehhhhcCeEEEEEEE--CCcEEEEEEeCCEECCCceeccC-CCCCCcEEEEEECHHHhccCCccCHHHHH---HHHH
Confidence 79999999999999974 79999999999998666555544 46899999999999999 88899999875 9999
Q ss_pred HhhccCCCcEEEeccccC
Q psy7164 273 DAAASTKDVKVFLNGEKL 290 (2307)
Q Consensus 273 dlA~LnpGLkI~lnder~ 290 (2307)
++|||||||+|+|+|+|.
T Consensus 166 elA~ln~gv~i~l~der~ 183 (198)
T 3ttz_A 166 ELAFLNKGIQITLRDERD 183 (198)
T ss_dssp HHHHHSTTCEEEEEECSS
T ss_pred HHhhcCCCCEEEEEeecC
Confidence 999999999999999984
No 37
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.94 E-value=8.2e-29 Score=319.69 Aligned_cols=289 Identities=16% Similarity=0.112 Sum_probs=199.0
Q ss_pred hhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeEEEEEE
Q psy7164 34 KIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVN 113 (2307)
Q Consensus 34 ~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~ 113 (2307)
+.++.++-.++++++|+||....++ .+|++++.|+|+||+|+...+|+++.|.|+++
T Consensus 11 e~~k~isi~~~~~~~~~~~~~~~D~-----------------------~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~ 67 (621)
T 2q2e_B 11 KKQKSISVAEFFEKNRQILGFDSAP-----------------------RSLITTVKEAVDNALDACEEAGILPDILVQVE 67 (621)
T ss_dssp CCCCCSCSHHHHHHSTTTSSCSSHH-----------------------HHHHHHHHHHHHHHHHHHTTTSCSCEEEECCE
T ss_pred HHhhcCceEEEecCCCceeEEecCH-----------------------HHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEE
Confidence 4566677789999999999666553 58999999999999999877788899999998
Q ss_pred ccC---CeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCccccccCC
Q psy7164 114 QET---NTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGR 190 (2307)
Q Consensus 114 ~d~---gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGl 190 (2307)
.++ ..|+|+|||+|||.+.++. +|+.+|++ ++|.. ++.++|.
T Consensus 68 ~~~~~~~~I~V~DnG~GIp~e~l~~--------iF~~~~at-------------------------skf~~--~~~s~Gg 112 (621)
T 2q2e_B 68 RTGPDYVTVIIEDNGPGIVREQIPK--------VFAKLLYG-------------------------SRFHA--LKQSRGQ 112 (621)
T ss_dssp EETTTEEEEEEECCSCCCCGGGHHH--------HHSCCCCC---------------------------CCC--CC-CCSS
T ss_pred ECCCcEEEEEEEECCCCCCHHHHHH--------HhhhhccC-------------------------Ccccc--ccccCCC
Confidence 764 2799999999999987643 45555555 77764 5688999
Q ss_pred Cccccccccccccee-----EEEEEeecccEEEEEEe----ecCCCcCCCccccCCCCCCCcEEEEEeCcccccccccCH
Q psy7164 191 NGYGAKLCNIFSSKF-----VVETSCSEYKKSFKQVW----KDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDK 261 (2307)
Q Consensus 191 hGVGasvvNAlS~~f-----~Vev~~~~~gk~y~q~f----~~g~~~~~~~~i~~~~~~~GT~VtF~PD~~iF~~~~f~~ 261 (2307)
||+|+++||++|+.+ .|++........|.+.| .+|++.............+||+|+|+ |. ..++.
T Consensus 113 ~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~~~~~~~GT~V~~~-----f~-~~~~~ 186 (621)
T 2q2e_B 113 QGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRDWFRPHGTQIELE-----MR-AAYVK 186 (621)
T ss_dssp SSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEECCCSCSSCCCEEEE-----CS-CCCCC
T ss_pred ceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhcccccccccccccCCCCCCCEEEEE-----ec-Cccch
Confidence 999999999999996 88886422226888888 66665442222222345799999999 43 34444
Q ss_pred ---HHHHHHHHHHHHhhccCCCcEEEeccccCCccchHHHHHHHhccCC-CCCCCeEEEEEecCCeeEEEEeecCCCceE
Q psy7164 262 ---DMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQD-EDGDPVKIIYENVNPRWEVAIAPSDRGFQQ 337 (2307)
Q Consensus 262 ---d~l~~l~~Rl~dlA~LnpGLkI~lnder~~~~G~~dYV~~~~~~~~-~~~~~~~ii~e~~~~~~EVAl~~s~~~y~~ 337 (2307)
+.+ .+|++++|++|||++|+|+|++...--+..++.++..... .+..+ +......|+++++|++ +|+.
T Consensus 187 ~~~~~I---~~~L~~lAllnpgv~I~L~d~~~~~~~~~gg~~~L~~~~~~i~p~~----~G~~~~~~eval~~~~-~~~i 258 (621)
T 2q2e_B 187 GRRQSI---YEYLKATAIVNPHARITLIDPDGNEEVFERATDKMPEPAEEILPHP----EGIELGTLMKMLHYTE-RQKL 258 (621)
T ss_dssp CSSSSS---HHHHHHHHHHCCSCEEEECCTTSCCEEEECCCCCCCCCCCCCCCCS----TTCCHHHHHHHHHHCC-----
T ss_pred HHHHHH---HHHHHHHHhhCCCCEEEEEECCceEEEeCCcccchhcccccccCCc----eeeccCeEEEEEeeCC-CeEE
Confidence 444 4899999999999999999987432111111122221110 00011 1111237889999875 7889
Q ss_pred EEeeCCccCCCCcchhhHHHHHHHHHHHHHHHHhccccccceeeccccccccccchhhhhcccccccccccccccCChHh
Q psy7164 338 VSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQ 417 (2307)
Q Consensus 338 ~SFVNnI~T~eGGTHvdgfr~aLtr~i~~~~kkk~k~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~dvreg~~~vk~~d 417 (2307)
.||||+|+|.+|| +++++|+++.+. .|+. ....++++|
T Consensus 259 ~sFvN~i~T~~GG-----------r~in~~~~~~~l----------------~k~~---------------~~~~lt~dD 296 (621)
T 2q2e_B 259 APFLRYSFCKIGL-----------LTAEEICKAAGL----------------DPEI---------------DPHALGRHE 296 (621)
T ss_dssp -CTTSSSSCC--C-----------HHHHHHHHTTTC----------------CTTS---------------CSSSCCSSS
T ss_pred EEEeCCcccCCCH-----------HHHHHHHHHhCc----------------cccc---------------cCCCCCHHH
Confidence 9999999999999 567788876543 1110 123577889
Q ss_pred HhcceEEEEEeecCCCccc
Q psy7164 418 VKNHIWIFINCLIVNPTFD 436 (2307)
Q Consensus 418 Ire~L~~~Vsvki~nP~Fe 436 (2307)
||++|++||||+++||+|+
T Consensus 297 iregL~avisvki~~Pqtk 315 (621)
T 2q2e_B 297 ARKLIEAFEKVKIMAPPTD 315 (621)
T ss_dssp STTTTHHHHTSCCSCCCST
T ss_pred HHhhcEEEEEEECCCCCcc
Confidence 9999999999999999875
No 38
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.70 E-value=1.6e-17 Score=167.75 Aligned_cols=90 Identities=68% Similarity=1.111 Sum_probs=82.9
Q ss_pred CCCCCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEecc-CCccEEEeCCCChhhHhhcCCCCceec
Q psy7164 1340 DSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYES-SRTTHIIASNLPHTKIKKLKPGDKIIK 1418 (2307)
Q Consensus 1340 ~~~~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~-~~vTHIIas~l~~~K~~~~k~~~kIVk 1418 (2307)
...++||+||+|||+|++. |++.+|+++|..|||+|..+++ .++|||||.+.+..|.+.++ +++||+
T Consensus 7 ~~~~~lF~g~~~~isg~~~-----------~~~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~~~-~~~iV~ 74 (97)
T 2ebw_A 7 GTSSTIFSGVAIYVNGYTD-----------PSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIR 74 (97)
T ss_dssp SCCCCTTTTCEEEECSSCS-----------SCHHHHHHHHHHTTCEECSSCCSSSCCEEECSCCCTTHHHHTS-SSCCBC
T ss_pred CCCCCCCCCeEEEEeCCCc-----------ccHHHHHHHHHHcCCEEeeecCCCCCEEEEecCCChHHHHHhc-CCCEeC
Confidence 4567899999999999987 8899999999999999999887 68999999998888988887 899999
Q ss_pred cChHHHHHHhCCCCCCcCceeee
Q psy7164 1419 PEWIVDSISAGKLLDHKKYLLYT 1441 (2307)
Q Consensus 1419 peWI~DSI~~gklLp~~~Y~l~~ 1441 (2307)
|+||+|||++|++|||++|+|++
T Consensus 75 p~Wl~dci~~~~~l~~~~Y~l~~ 97 (97)
T 2ebw_A 75 PEWIVESIKAGRLLSYIPYQLYT 97 (97)
T ss_dssp THHHHHHHHHTSCCCSGGGBSCC
T ss_pred hHHHHHHHHcCCccCchHcEecC
Confidence 99999999999999999999874
No 39
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=4.4e-17 Score=162.31 Aligned_cols=87 Identities=43% Similarity=0.803 Sum_probs=79.1
Q ss_pred CCCCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEecc--CCccEEEeCCCChhhHhhcCCCCceec
Q psy7164 1341 SRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYES--SRTTHIIASNLPHTKIKKLKPGDKIIK 1418 (2307)
Q Consensus 1341 ~~~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~--~~vTHIIas~l~~~K~~~~k~~~kIVk 1418 (2307)
+.+++|+||+|||+|++. |++.+|+++|..|||+|..+++ .+|||||+...+.+|..+.. +++||+
T Consensus 3 ~~~~~f~g~~~~i~g~~~-----------~~~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~~~K~~~~~-~~~iV~ 70 (92)
T 4id3_A 3 QSSKIFKNCVIYINGYTK-----------PGRLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLPLKKRIEFA-NYKVVS 70 (92)
T ss_dssp ---CTTTTCEEEECSCCS-----------SCHHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCCHHHHHHTT-TSCEEC
T ss_pred ccccccCCEEEEEeCCCC-----------cCHHHHHHHHHHCCCEEEEEecCCCceEEEEecCCCHHHHHHcC-CCCEEc
Confidence 356899999999999986 8899999999999999999998 78999999998888877765 799999
Q ss_pred cChHHHHHHhCCCCCCcCcee
Q psy7164 1419 PEWIVDSISAGKLLDHKKYLL 1439 (2307)
Q Consensus 1419 peWI~DSI~~gklLp~~~Y~l 1439 (2307)
|+||+||+++|++|||++|+|
T Consensus 71 ~~Wi~dci~~~~~l~e~~Y~l 91 (92)
T 4id3_A 71 PDWIVDSVKEARLLPWQNYSL 91 (92)
T ss_dssp THHHHHHHHHTSCCCGGGGBC
T ss_pred ccHHHHHHHcCCcCChhhccc
Confidence 999999999999999999987
No 40
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.61 E-value=6.1e-18 Score=216.42 Aligned_cols=291 Identities=19% Similarity=0.191 Sum_probs=174.0
Q ss_pred ChhhhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeEEE
Q psy7164 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKI 110 (2307)
Q Consensus 31 ~~~~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I~V 110 (2307)
.+.+.++.++..|.++++|+||+.+.+. ..|.+++.|+|+||+|.....+....|.|
T Consensus 2 el~~~~k~isi~eff~~~~~l~i~~~d~-----------------------~~L~qvl~NLV~NAida~~~gg~~p~I~I 58 (530)
T 2zbk_B 2 SAKEKFTSLSPAEFFKRNPELAGFPNPA-----------------------RALYQTVRELIENSLDATDVHGILPNIKI 58 (530)
T ss_dssp ------------CGGGTCCGGGTCSSHH-----------------------HHHHHHHHHHHHHHHTTTTTTTCCCCCEE
T ss_pred chhHHhhhcChhheeecCCCceEEcCcH-----------------------HHHHHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 3445678888899999999999877653 47999999999999998653332337888
Q ss_pred EEEccC---C--eEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCccc
Q psy7164 111 TVNQET---N--TISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDK 185 (2307)
Q Consensus 111 ~i~~d~---g--sIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk 185 (2307)
.+..++ + .|+|.|||+|||.+..+ .+|..++++ +++. +.
T Consensus 59 ~i~~~~~~~~~~~I~V~DnG~GI~~e~l~--------~iF~~f~~t-------------------------sk~~---~~ 102 (530)
T 2zbk_B 59 TIDLIDDARQIYKVNVVDNGIGIPPQEVP--------NAFGRVLYS-------------------------SKYV---NR 102 (530)
T ss_dssp EEEEEETTTTEEEEEEECCSCCCCGGGSH--------HHHTSCCCS-------------------------CCCC---CS
T ss_pred EEEECCCcCceEEEEEEECCCCCCHHHHH--------HHhcccccc-------------------------CCcc---cc
Confidence 887642 2 79999999999987543 233333333 5552 34
Q ss_pred cccCCCcccccccccccc-----eeEEEEEeecccEEEEEEeecCC----CcC-CCccccCCCCCCCcEEEEEeCccccc
Q psy7164 186 VTGGRNGYGAKLCNIFSS-----KFVVETSCSEYKKSFKQVWKDNM----SKV-TSPEIKSGSKDDFTKITFTPDLTKFK 255 (2307)
Q Consensus 186 ~sgGlhGVGasvvNAlS~-----~f~Vev~~~~~gk~y~q~f~~g~----~~~-~~~~i~~~~~~~GT~VtF~PD~~iF~ 255 (2307)
.++|.+|+|+++|+.+++ ++.|++........|...+.-.. +.. ...........+||+|+|+ |.
T Consensus 103 ~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~-----l~ 177 (530)
T 2zbk_B 103 QTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAIS-----IP 177 (530)
T ss_dssp CCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEEECCSSCCEEEEEEE-----EE
T ss_pred cCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCccccccccCCCCCCCCcEEEEE-----ec
Confidence 678899999999999999 68887754221124443322110 111 1111111225689999998 44
Q ss_pred ccccCHHHHHHHHHHHHHhhccCCCcEEEeccccCCccchHHHHHHHhccCCCCCC-CeEEEEEecCCeeEEEEe-ecC-
Q psy7164 256 MTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGD-PVKIIYENVNPRWEVAIA-PSD- 332 (2307)
Q Consensus 256 ~~~f~~d~l~~l~~Rl~dlA~LnpGLkI~lnder~~~~G~~dYV~~~~~~~~~~~~-~~~ii~e~~~~~~EVAl~-~s~- 332 (2307)
...+.. ...+.++++.+|++||+++|.|.+..... -. +....+.... +..+.+.-.+..++.+++ ++.
T Consensus 178 ~~~~e~--~~~i~~~l~~~Al~~p~v~~~l~~~~~~~---~~----~~~~~~~lp~~~~~~~~~~~Gi~~~~~l~~~~~~ 248 (530)
T 2zbk_B 178 GDWPKA--KSRIYEYIKRTYIITPYAEFIFKDPEGNV---TY----YPRLTNKIPKPPQEVKPHPYGVDREEIKILINNL 248 (530)
T ss_dssp CCHHHH--HHHHHHHHHHHHHHCTTCCEEEECTTSCE---EE----ECCCCCCCCCCCCCCCCCGGGCCHHHHHHHHTTC
T ss_pred cchhhH--HHHHHHHHHHHHHHCCCcEEEEEECCCeE---EE----ecCccccccCCcceeccCCCChhHHHHHHHHhcc
Confidence 333322 23456889999999999999998753210 00 0000000000 001111112444555555 332
Q ss_pred -CCceEEEeeCCccCCCCcchhhHHHHHHHHHHHHHHHHhccccccceeeccccccccccchhhhhcccccccccccccc
Q psy7164 333 -RGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGM 411 (2307)
Q Consensus 333 -~~y~~~SFVNnI~T~eGGTHvdgfr~aLtr~i~~~~kkk~k~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~dvreg~~ 411 (2307)
..++..+|+|+++|..||+|+++|++++ +. .++.+ ..
T Consensus 249 ~~~~~l~~fl~~~ft~~g~~~a~~~~~~~-----------gl----------------~~~~~---------------~~ 286 (530)
T 2zbk_B 249 KRDYTIKEFLVNEFQSIGDTTADKILELA-----------GL----------------KPNKK---------------VK 286 (530)
T ss_dssp SSCCBHHHHHHTTSTTCCHHHHHHHHHHT-----------TC----------------CSSCB---------------SS
T ss_pred CCCceeHhhhcCccccccHHHHHHHHHhh-----------CC----------------CCCCC---------------cc
Confidence 1225579999999999999999999875 11 00000 12
Q ss_pred cCChHhHhcceEEEEEee-cCCCccc
Q psy7164 412 ALKPFQVKNHIWIFINCL-IVNPTFD 436 (2307)
Q Consensus 412 ~vk~~dIre~L~~~Vsvk-i~nP~Fe 436 (2307)
.+++++++++|.++++++ +.+|.=+
T Consensus 287 ~l~~~~~~~ll~a~~~~k~~~~P~~~ 312 (530)
T 2zbk_B 287 NLTEEEITRLVETFKKDEDFRSPSAD 312 (530)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCCCCST
T ss_pred cCCHHHHHHHHHHHHhccCCCCCCcc
Confidence 467889999999999998 7776544
No 41
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.51 E-value=8.7e-15 Score=149.64 Aligned_cols=90 Identities=20% Similarity=0.331 Sum_probs=77.4
Q ss_pred CCCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCChhhHhhcC---CCCceec
Q psy7164 1342 RGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLK---PGDKIIK 1418 (2307)
Q Consensus 1342 ~~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~K~~~~k---~~~kIVk 1418 (2307)
-++||.|++||++|.+. .+.+..|+++|.++||.+..|++++|||||+......+....+ .+.++|+
T Consensus 4 Lpd~F~g~~f~l~~~~p----------~~~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~~d~~~~~a~~~~p~~~~V~ 73 (104)
T 3pc6_A 4 LPDFFEGKHFFLYGEFP----------GDERRRLIRYVTAFNGELEDYMNERVQFVITAQEWDPNFEEALMENPSLAFVR 73 (104)
T ss_dssp CCCTTTTCEEEEESCCS----------TTHHHHHHHHHHHTTCEECSSCCTTCCEEEESSCCCHHHHHHHTTCTTCEEEC
T ss_pred cchhhCCeEEEEcCCCc----------HHHHHHHHHHHHHcCCEEEcccCCCceEEEeCCCCChhHHHHhhhCCCCeEEc
Confidence 46899999999999982 1567889999999999999999999999999985555544333 2789999
Q ss_pred cChHHHHHHhCCCCCCcCceeee
Q psy7164 1419 PEWIVDSISAGKLLDHKKYLLYT 1441 (2307)
Q Consensus 1419 peWI~DSI~~gklLp~~~Y~l~~ 1441 (2307)
|+||.|||+++|++|+++|++.+
T Consensus 74 P~WI~~Ci~~~klvp~~~y~~~~ 96 (104)
T 3pc6_A 74 PRWIYSCNEKQKLLPHQLYGVVP 96 (104)
T ss_dssp HHHHHHHHHHTSCCCGGGGBCCC
T ss_pred cHHHHHHHhcCccCCcccceecc
Confidence 99999999999999999999876
No 42
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.50 E-value=5.1e-14 Score=171.80 Aligned_cols=221 Identities=15% Similarity=0.141 Sum_probs=144.5
Q ss_pred cchhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccC-CeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCccc
Q psy7164 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQET-NTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEED 159 (2307)
Q Consensus 81 ~pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~-gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~ 159 (2307)
+..+.+++.|+|+||+|.. ++.|.|.++.++ ..|+|.|||.|||.+..+. +|. .|++
T Consensus 22 i~~~~~~v~ELi~NaidA~-----a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~--------~~~-~~~t-------- 79 (333)
T 1b63_A 22 VERPASVVKELVENSLDAG-----ATRIDIDIERGGAKLIRIRDNGCGIKKDELAL--------ALA-RHAT-------- 79 (333)
T ss_dssp CSSHHHHHHHHHHHHHHTT-----CSEEEEEEEGGGTSEEEEEECSCCCCGGGHHH--------HHS-TTCC--------
T ss_pred hhCHHHHHHHHHHHHHHCC-----CCeEEEEEEeCCceEEEEEEcCCCcCHHHHHH--------hhh-cccc--------
Confidence 3467899999999999942 468999998743 3899999999999875431 221 1222
Q ss_pred ccccccccccccccccccCCCC--Ccc-ccccCCCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccC
Q psy7164 160 KVTGVVPTMIFGHLLTSSNYND--EED-KVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKS 236 (2307)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~nfd~--~~y-k~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~ 236 (2307)
+|+++ +.+ ..+.|.+|+|++.++++| +++|++........|.. |.+|.... ..+..
T Consensus 80 -----------------sK~~~~~d~~~~~~~G~~G~gl~si~~vs-~l~v~s~~~~~~~~~~~-~~~g~~~~--~~~~~ 138 (333)
T 1b63_A 80 -----------------SKIASLDDLEAIISLGFRGEALASISSVS-RLTLTSRTAEQQEAWQA-YAEGRDMN--VTVKP 138 (333)
T ss_dssp -----------------SSCCSHHHHHTCCSSCCSSCHHHHHHTTS-EEEEEEECTTCSSEEEE-EEETTTTE--EEEEE
T ss_pred -----------------cCccccchhhhccccCccccchhhhhcCC-cEEEEEecCCCceEEEE-EEcCCcce--Eeeec
Confidence 34432 112 257899999999999999 69998875322335654 56664311 11122
Q ss_pred CCCCCCcEEEEE------eCccccc-ccccCHHHHHHHHHHHHHhhccCCCcEEEec--cccC---C----ccchHHHHH
Q psy7164 237 GSKDDFTKITFT------PDLTKFK-MTSLDKDMVDLITRRAYDAAASTKDVKVFLN--GEKL---P----VKNFQDYVK 300 (2307)
Q Consensus 237 ~~~~~GT~VtF~------PD~~iF~-~~~f~~d~l~~l~~Rl~dlA~LnpGLkI~ln--der~---~----~~G~~dYV~ 300 (2307)
....+||+|+|+ |+..+|- .....+ ..+.++++.+|+++|+++|.|. |+.. . ..++.+++.
T Consensus 139 ~~~~~GT~V~v~~Lf~n~P~r~kflk~~~~e~---~~i~~~~~~~al~~p~v~~~l~~ng~~~~~~~~~~~~~~~~~~i~ 215 (333)
T 1b63_A 139 AAHPVGTTLEVLDLFYNTPARRKFLRTEKTEF---NHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGGQKERRLG 215 (333)
T ss_dssp ECCCSEEEEEEESTTTTCHHHHHTCCCHHHHH---HHHHHHHHHHHHHCTTCEEEEEETTEEEEEECCCCTTCCTHHHHH
T ss_pred ccCCCCCEEEEecccccchhhhhhhccHHHHH---HHHHHHHHHHhccCCCcEEEEEECCEEEEecCCCCCCchHHHHHH
Confidence 345799999998 8887773 222333 3456889999999999988884 4432 1 125777887
Q ss_pred HHhccCCCCCCCeEEEEEecCCeeEEEEeecC--CC---ceEEEeeCCccCCC
Q psy7164 301 LYTDRQDEDGDPVKIIYENVNPRWEVAIAPSD--RG---FQQVSFVNSIATTK 348 (2307)
Q Consensus 301 ~~~~~~~~~~~~~~ii~e~~~~~~EVAl~~s~--~~---y~~~SFVNnI~T~e 348 (2307)
.+.+... ....+.+..+..+..++..+++.+ .+ ..++.|||+.+...
T Consensus 216 ~i~G~~~-~~~li~i~~~~~~~~v~G~i~~p~~~~~~~~~~~~~fvNgR~V~~ 267 (333)
T 1b63_A 216 AICGTAF-LEQALAIEWQHGDLTLRGWVADPNHTTPALAEIQYCYVNGRMMRD 267 (333)
T ss_dssp HHHCHHH-HHHEEEEEEEETTEEEEEEEECGGGCCTTGGGCEEEEETTEECCC
T ss_pred HHhChhh-HhheEEEEecCCCEEEEEEEEcCccccCCCCCcEEEEECCEEecC
Confidence 7653211 112234444555667787787754 12 34799999998764
No 43
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.49 E-value=2.1e-14 Score=175.10 Aligned_cols=183 Identities=16% Similarity=0.166 Sum_probs=125.6
Q ss_pred hhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeEEEEEEc
Q psy7164 35 IYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQ 114 (2307)
Q Consensus 35 ~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~ 114 (2307)
.++.|.....-+.++|++|. .+.+++.|+|+||+|+. ++.|.|.++.
T Consensus 8 ~I~~L~~~~~~~Iaagevi~----------------------------~~~~vv~eLv~NAidA~-----a~~I~I~i~~ 54 (348)
T 3na3_A 8 VIRRLDETVVNRIAAGEVIQ----------------------------RPANAIKEMIENCLDAK-----STSIQVIVKE 54 (348)
T ss_dssp CCCCCCHHHHHHHHHHHHCC----------------------------SHHHHHHHHHHHHHHTT-----CSEEEEEEEG
T ss_pred ccccCCHHHHHhhcccCccc----------------------------CHHHHHHHHHHHHHHcC-----CCEEEEEEEe
Confidence 46777777777777777663 35689999999999963 4689999986
Q ss_pred cCC-eEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCccccccCCCcc
Q psy7164 115 ETN-TISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGY 193 (2307)
Q Consensus 115 d~g-sIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGV 193 (2307)
++. .|+|.|||+|||.+..+. +| ..|+++|+.+ ++|.....|+|.||+
T Consensus 55 ~~~~~I~V~DnG~GI~~~~l~~--------~~-~~~~tsK~~~----------------------~~dl~~i~s~GfrGe 103 (348)
T 3na3_A 55 GGLKLIQIQDNGTGIRKEDLDI--------VC-ERFTTSKLQS----------------------FEDLASISTYGFRGE 103 (348)
T ss_dssp GGTSEEEEEECSCCCCGGGGGT--------TT-STTCCSSCCC----------------------C---------CCTTC
T ss_pred CCEEEEEEEECCcCcChHHhhh--------hh-ccccccccCc----------------------chhhhccccCCcCCh
Confidence 432 599999999999886532 12 2344422221 223334589999999
Q ss_pred cccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCCCCCCCcEEEE------EeCcccc-cccccCHHHHHH
Q psy7164 194 GAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITF------TPDLTKF-KMTSLDKDMVDL 266 (2307)
Q Consensus 194 GasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~~~~~GT~VtF------~PD~~iF-~~~~f~~d~l~~ 266 (2307)
|++.++++| +++|+++.......|++.|.+|...... ..+...+||+|+| +|+..+| ......++ .
T Consensus 104 aL~Si~avs-~l~v~sr~~~~~~~~~~~~~~G~~~~~~---~~~~~~~GTtV~v~~LF~n~P~R~k~lk~~~~e~~---~ 176 (348)
T 3na3_A 104 ALASISHVA-HVTITTKTADGKCAYRASYSDGKLKAPP---KPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYG---K 176 (348)
T ss_dssp HHHHHHHSS-EEEEEEECTTCSSEEEEEEETTEESSCC---EEECCCSEEEEEEESTTTTCHHHHHTSCCHHHHHH---H
T ss_pred HHHHhhccc-EEEEEEEECCCCceEEEEEeCCEEeeee---eEecCCCCcEEEECcccccCchhhhhccccHHHHH---H
Confidence 999999999 7999887543346899999887542221 1224578999999 6888777 33333333 3
Q ss_pred HHHHHHHhhccCCCcEEEeccc
Q psy7164 267 ITRRAYDAAASTKDVKVFLNGE 288 (2307)
Q Consensus 267 l~~Rl~dlA~LnpGLkI~lnde 288 (2307)
+.++++++|++|||++|.|.++
T Consensus 177 i~~~l~~~Al~~p~v~f~l~~~ 198 (348)
T 3na3_A 177 ILEVVGRYSVHNAGISFSVKKQ 198 (348)
T ss_dssp HHHHHHHHHHHCTTCEEEEEET
T ss_pred HHHHHHHHHhhCCCeEEEEEEC
Confidence 5689999999999999999764
No 44
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.44 E-value=8.5e-14 Score=148.57 Aligned_cols=90 Identities=17% Similarity=0.413 Sum_probs=74.9
Q ss_pred CCCCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCChhhHhhc---CCCCcee
Q psy7164 1341 SRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKL---KPGDKII 1417 (2307)
Q Consensus 1341 ~~~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~K~~~~---k~~~kIV 1417 (2307)
.+..||+||+|||+|++. +.+..|+.++..|||++..+++.+|||||+........+.+ ..+.+||
T Consensus 36 ~~~~lF~g~~i~i~G~~~-----------~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~~~~~~~~~~~~~~~~~iV 104 (132)
T 1wf6_A 36 APEDLLDGCRIYLCGFSG-----------RKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYDDELKQFWNKSAHRPHVV 104 (132)
T ss_dssp CCTTTTTTCEEEEESCCS-----------HHHHHHHHHHHHTTCEEESSCCSSCCEEEESSCCSHHHHHHHHSCCCCCEE
T ss_pred ccccccCCEEEEEECCCh-----------HHHHHHHHHHHHCCCEEeCcCCCCCeEEEECCchHHHHHHHHhhCCCCeEe
Confidence 456899999999999975 57788999999999999999999999999987433211111 1368999
Q ss_pred ccChHHHHHHhCCCCCCcCceeee
Q psy7164 1418 KPEWIVDSISAGKLLDHKKYLLYT 1441 (2307)
Q Consensus 1418 kpeWI~DSI~~gklLp~~~Y~l~~ 1441 (2307)
+|+||.|||++|++|||.+|++..
T Consensus 105 ~~~Wv~dsi~~~~ll~e~~Y~~~~ 128 (132)
T 1wf6_A 105 GAKWLLECFSKGYMLSEEPYIHSG 128 (132)
T ss_dssp EHHHHHHHHHHSSCCCSGGGBCCC
T ss_pred chHHHHHHHHcCCcCCHhhccCCC
Confidence 999999999999999999997643
No 45
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.43 E-value=6.5e-14 Score=172.12 Aligned_cols=160 Identities=19% Similarity=0.118 Sum_probs=113.0
Q ss_pred chhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCccc
Q psy7164 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEED 159 (2307)
Q Consensus 82 pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~ 159 (2307)
..+.+++.|+|+||+|+ + ++.|.|.+.. +| .|+|.|||+|||.+..+. +| ..|+.+|+.
T Consensus 24 ~~~~~vv~eLv~NaiDA----~-a~~I~I~i~~-~~~~~i~V~DnG~Gi~~~~l~~--------~~-~~~~tsK~~---- 84 (367)
T 3h4l_A 24 TDLTTAVKELVDNSIDA----N-ANQIEIIFKD-YGLESIECSDNGDGIDPSNYEF--------LA-LKHYTSKIA---- 84 (367)
T ss_dssp CSHHHHHHHHHHHHHHT----T-CSEEEEEEET-TTTSEEEEEECSCCCCGGGTTT--------TT-CCEEC--------
T ss_pred cCHHHHHHHHHHHHHHC----C-CCEEEEEEEe-CCEEEEEEEECCCCcChhHhcc--------ce-eccccCcCC----
Confidence 45778999999999995 2 5689999975 44 899999999999986642 11 223332222
Q ss_pred ccccccccccccccccccCCCCCccccccCCCcccccccccccceeEEEEEeecccEEEEEEee-cCCCcCCCccccCCC
Q psy7164 160 KVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWK-DNMSKVTSPEIKSGS 238 (2307)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~-~g~~~~~~~~i~~~~ 238 (2307)
.++|-....|.|.||+|++.++++| +++|+++... ...|++.|. +|..... ..+.
T Consensus 85 ------------------~~~Dl~~i~t~GfrGeaL~Si~avS-~l~V~sr~~~-~~~~~~~~~~~G~~~~~----~~~~ 140 (367)
T 3h4l_A 85 ------------------KFQDVAKVQTLGFRGEALSSLCGIA-KLSVITTTSP-PKADKLEYDMVGHITSK----TTTS 140 (367)
T ss_dssp -----------------------CCCCEEEETTHHHHHHHHSS-EEEEEEESST-TCEEEEEECTTCCEEEE----EEEC
T ss_pred ------------------chhhhhhhhccCccchHHHHhhccC-EEEEEEEECC-CCEEEEEEcCCCcEEee----cccc
Confidence 1233344579999999999999999 5999887532 478999996 5543221 1234
Q ss_pred CCCCcEEEE------EeCccc-c-cccccCHHHHHHHHHHHHHhhccCCCcEEEecc
Q psy7164 239 KDDFTKITF------TPDLTK-F-KMTSLDKDMVDLITRRAYDAAASTKDVKVFLNG 287 (2307)
Q Consensus 239 ~~~GT~VtF------~PD~~i-F-~~~~f~~d~l~~l~~Rl~dlA~LnpGLkI~lnd 287 (2307)
..+||+|+| +|+..+ | ......++. +..+++++|++|||++|.|.+
T Consensus 141 ~~~GTtV~v~~LF~n~P~R~k~flk~~~~e~~~---i~~~l~~~Al~~p~v~~~l~~ 194 (367)
T 3h4l_A 141 RNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTK---CLTVIQGYAIINAAIKFSVWN 194 (367)
T ss_dssp CSSEEEEEEESTTTTCHHHHHHHHTTHHHHHHH---HHHHHHHHHHHCTTCEEEEEE
T ss_pred CCCCeEEEEchhhccCchhhhhhccchHHHHHH---HHHHHHHHHhhCCCeEEEEEE
Confidence 579999999 688777 7 333334443 558899999999999999964
No 46
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.4e-13 Score=146.36 Aligned_cols=89 Identities=26% Similarity=0.500 Sum_probs=80.7
Q ss_pred CCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCChhhHhhcCC-CCceeccCh
Q psy7164 1343 GGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKP-GDKIIKPEW 1421 (2307)
Q Consensus 1343 ~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~K~~~~k~-~~kIVkpeW 1421 (2307)
+.+|+||+|+|+|++. +++.+|+++|..|||+|..+++.+||||||......|+....+ +++||+|+|
T Consensus 20 ~~~f~g~~i~itG~~~-----------~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~~K~~~A~~~gi~IV~~~W 88 (129)
T 2d8m_A 20 GKILQGVVVVLSGFQN-----------PFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKEW 88 (129)
T ss_dssp TTTSTTEEEEEESCCT-----------THHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSCHHHHHHHHHTCEEEETHH
T ss_pred cccCCCeEEEEeCCCc-----------HHHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCCChHHHHHHHCCCcEecHHH
Confidence 3699999999999986 7899999999999999999999999999999877777766543 899999999
Q ss_pred HHHHHHhCCCCCCcCceeeec
Q psy7164 1422 IVDSISAGKLLDHKKYLLYTG 1442 (2307)
Q Consensus 1422 I~DSI~~gklLp~~~Y~l~~~ 1442 (2307)
|.||++++++|||.+|+|...
T Consensus 89 l~d~~~~~~~l~e~~Y~l~~~ 109 (129)
T 2d8m_A 89 VLDCHRMRRRLPSQRYLMAGP 109 (129)
T ss_dssp HHHHHHTTSCCCGGGGBCSSS
T ss_pred HHHHHHhCCcCChHhcccCCC
Confidence 999999999999999988654
No 47
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.40 E-value=1.5e-13 Score=141.42 Aligned_cols=89 Identities=20% Similarity=0.260 Sum_probs=74.7
Q ss_pred CCCCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCC---CChhhHhhcC-CCCce
Q psy7164 1341 SRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASN---LPHTKIKKLK-PGDKI 1416 (2307)
Q Consensus 1341 ~~~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~---l~~~K~~~~k-~~~kI 1416 (2307)
..+++|+||+|+|+|++. +++.+|+++|.++||+|...++.+||||||.. ....|....+ .|++|
T Consensus 11 ~~~~~l~g~~i~isg~~~-----------~~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~~~~~K~~~A~~~gi~I 79 (107)
T 3l3e_A 11 EAPKPLHKVVVCVSKKLS-----------KKQSELNGIAASLGADYRRSFDETVTHFIYQGRPNDTNREYKSVKERGVHI 79 (107)
T ss_dssp ---CTTTTCEEEECGGGG-----------GGHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTTCCCHHHHHHHHTTCEE
T ss_pred cccCCCCCeEEEEeCCCh-----------HhHHHHHHHHHHcCCEEeccccCCceEEEecCCCCCCCHHHHHHHHCCCeE
Confidence 456899999999999986 68899999999999999999999999999953 2234544433 38999
Q ss_pred eccChHHHHHHhCCCCCCcCceee
Q psy7164 1417 IKPEWIVDSISAGKLLDHKKYLLY 1440 (2307)
Q Consensus 1417 VkpeWI~DSI~~gklLp~~~Y~l~ 1440 (2307)
|+|+||.||+++|++||+.+|.+.
T Consensus 80 V~~~Wl~~c~~~~~~l~e~~Y~~~ 103 (107)
T 3l3e_A 80 VSEHWLLDCAQECKHLPESLYPHT 103 (107)
T ss_dssp ECHHHHHHHHHHTSCCCGGGCCTT
T ss_pred ecHHHHHHHHHhCCCCchhhCCCC
Confidence 999999999999999999999764
No 48
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.39 E-value=9.4e-14 Score=143.58 Aligned_cols=89 Identities=19% Similarity=0.293 Sum_probs=78.2
Q ss_pred CCCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCChhhHhhcCC-CCceeccC
Q psy7164 1342 RGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKP-GDKIIKPE 1420 (2307)
Q Consensus 1342 ~~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~K~~~~k~-~~kIVkpe 1420 (2307)
+-.+|+||+||++|+.. ..+.+|+++|..|||+|...++.+|||||+......|.....+ +.+||+++
T Consensus 9 ~~~~F~g~~i~~sg~~~-----------~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~~~K~~~a~~~~i~IV~~~ 77 (109)
T 2cou_A 9 KVPPFQDCILSFLGFSD-----------EEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTVKDLPFEPSKKLFVVKQE 77 (109)
T ss_dssp CCCTTTTCBEEEESSCH-----------HHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTTCSSCSSCCCTTSEEECHH
T ss_pred cCCcCCCeEEEecCCCH-----------HHHHHHHHHHHHcCCEEecccCCCccEEEEeCCccHHHHHHHHCCCeEecHH
Confidence 45799999999999986 6788999999999999999999999999999866666555333 89999999
Q ss_pred hHHHHHHhCCCCCCcCceeee
Q psy7164 1421 WIVDSISAGKLLDHKKYLLYT 1441 (2307)
Q Consensus 1421 WI~DSI~~gklLp~~~Y~l~~ 1441 (2307)
||.|||+.|++|+|.+|.+..
T Consensus 78 Wl~dsi~~g~~ldE~~Y~~~~ 98 (109)
T 2cou_A 78 WFWGSIQMDARAGETMYLYEK 98 (109)
T ss_dssp HHHHHHHTTSCCCGGGTBCCC
T ss_pred HHHHHHHcCCcCChhccCCCC
Confidence 999999999999999997754
No 49
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=99.38 E-value=2.7e-13 Score=160.39 Aligned_cols=92 Identities=15% Similarity=0.288 Sum_probs=79.6
Q ss_pred CCCCCccceEEEE-eeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCChhhHhhcCCC-Cceec
Q psy7164 1341 SRGGIFQGVAIFV-NGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKPG-DKIIK 1418 (2307)
Q Consensus 1341 ~~~~IF~G~~iyV-nGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~K~~~~k~~-~kIVk 1418 (2307)
..++||+|++||| ||++. +++.+|+++|.+|||++.+++++.+|||||+..+.+....++++ ++||+
T Consensus 6 ~~s~lF~G~~f~V~sg~~~-----------~~k~~L~~lI~~~GG~v~~n~~~~t~~iIa~~~~~k~~~~~~~g~~~IV~ 74 (263)
T 3ii6_X 6 KISNIFEDVEFCVMSGTDS-----------QPKPDLENRIAEFGGYIVQNPGPDTYCVIAGSENIRVKNIILSNKHDVVK 74 (263)
T ss_dssp CCCCTTTTCEEEECCCC-------------CCHHHHHHHHHHTTCEECSSCCTTEEEEECSSCCHHHHHHHHSCSCCEEC
T ss_pred cCcccCCCeEEEEEcCCCC-----------CCHHHHHHHHHHcCCEEEecCCCCEEEEEeCCCCHHHHHHHhcCCCCEee
Confidence 4678999999999 89986 89999999999999999999988889999999875544445444 99999
Q ss_pred cChHHHHHHhCCCCCCcCceeeecC
Q psy7164 1419 PEWIVDSISAGKLLDHKKYLLYTGT 1443 (2307)
Q Consensus 1419 peWI~DSI~~gklLp~~~Y~l~~~~ 1443 (2307)
|+||+|||++|++|||++|.++...
T Consensus 75 p~Wv~Dci~~~~llp~~p~~~~~~~ 99 (263)
T 3ii6_X 75 PAWLLECFKTKSFVPWQPRFMIHMC 99 (263)
T ss_dssp HHHHHHHHHHTSCCCCCGGGEEECC
T ss_pred hHHHHHHHhcCCcCCCCHHHHhhCC
Confidence 9999999999999999999888754
No 50
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.36 E-value=2.5e-13 Score=140.79 Aligned_cols=88 Identities=18% Similarity=0.277 Sum_probs=78.0
Q ss_pred CCCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCChhhHhhcCC-CCceeccC
Q psy7164 1342 RGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKP-GDKIIKPE 1420 (2307)
Q Consensus 1342 ~~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~K~~~~k~-~~kIVkpe 1420 (2307)
+-++|.||+|+++|+.. ..+.+|.++|..|||+|...++.+|||+|+......|.....+ +.+||+++
T Consensus 18 ~~p~F~g~~Ic~sGf~~-----------~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~~~K~~~A~~~~i~IVs~e 86 (112)
T 3l46_A 18 GVPPFQDCILSFLGFSD-----------EEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVKDLPFEPSKKLYVVKQE 86 (112)
T ss_dssp CCCTTTTCEECEESCCH-----------HHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTTBSSCSSCCCSSCEEEEHH
T ss_pred CCCccCCeEEEEeCCCH-----------HHHHHHHHHHHHcCCEECcccCCCceEEEecCCchhhHHHHHHCCeeEecHH
Confidence 34799999999999986 5678999999999999999999999999999877666554433 89999999
Q ss_pred hHHHHHHhCCCCCCcCceee
Q psy7164 1421 WIVDSISAGKLLDHKKYLLY 1440 (2307)
Q Consensus 1421 WI~DSI~~gklLp~~~Y~l~ 1440 (2307)
|+.|||+.|.++++..|.+.
T Consensus 87 Wl~dsi~~g~~ldE~~Y~~~ 106 (112)
T 3l46_A 87 WFWGSIQMDARAGETMYLYE 106 (112)
T ss_dssp HHHHHHHHTSCCCGGGSBCC
T ss_pred HHHHHHHcCCccChhhceec
Confidence 99999999999999999874
No 51
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.7e-12 Score=132.15 Aligned_cols=82 Identities=27% Similarity=0.467 Sum_probs=68.2
Q ss_pred CCCCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEe-----------ccCCccEEEeCCCChhhHhh
Q psy7164 1341 SRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHY-----------ESSRTTHIIASNLPHTKIKK 1409 (2307)
Q Consensus 1341 ~~~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~-----------l~~~vTHIIas~l~~~K~~~ 1409 (2307)
..++||+|++|||+..+ ++.+|..+|..|||++... .+.++||+|+...+..+ .
T Consensus 8 ~~~~LF~g~~F~i~~e~-------------p~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~~~~--~ 72 (100)
T 2ep8_A 8 KHKKLFEGLKFFLNREV-------------PREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQQT--S 72 (100)
T ss_dssp CSCCTTSSCEEECCSSS-------------CHHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTTTSC--C
T ss_pred chHHHcCCcEEEEecCC-------------CHHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccchhh--h
Confidence 45789999999998753 5889999999999999875 35689999999854432 2
Q ss_pred cCCCCceeccChHHHHHHhCCCCCCcCce
Q psy7164 1410 LKPGDKIIKPEWIVDSISAGKLLDHKKYL 1438 (2307)
Q Consensus 1410 ~k~~~kIVkpeWI~DSI~~gklLp~~~Y~ 1438 (2307)
. .+.+||+|+||+|||+++++||+++|+
T Consensus 73 ~-~~r~~VqPqWV~Dcin~~~lLp~~~Y~ 100 (100)
T 2ep8_A 73 V-IGRCYVQPQWVFDSVNARLLLPVAEYF 100 (100)
T ss_dssp B-TTBEEECTHHHHHHHHHTSCCCTTTCC
T ss_pred c-CCCeEEcchHHHHHHhcCCcCChhhcC
Confidence 2 367999999999999999999999995
No 52
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.29 E-value=1.8e-12 Score=159.76 Aligned_cols=194 Identities=11% Similarity=0.075 Sum_probs=117.3
Q ss_pred hhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeEEEEEEc
Q psy7164 35 IYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQ 114 (2307)
Q Consensus 35 ~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~ 114 (2307)
.++.|.....-+.++|++|. .+.+++.|+|+||+|.. ++.|.|.+..
T Consensus 14 ~I~~L~~~~~~~i~agevi~----------------------------~~~~vl~eLv~NAiDA~-----a~~I~I~i~~ 60 (365)
T 1h7s_A 14 AIKPIDRKSVHQICSGQVVL----------------------------SLSTAVKELVENSLDAG-----ATNIDLKLKD 60 (365)
T ss_dssp ---------------CEEEC----------------------------CHHHHHHHHHHHHHHTT-----CSEEEEEEEG
T ss_pred hhccCCHHHHHHhcCCCchh----------------------------hHHHHHHHHHHHHHHCC-----CCEEEEEEEe
Confidence 47778888777777777653 35689999999999952 4689999976
Q ss_pred cC-CeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCC--Cccc-cccCC
Q psy7164 115 ET-NTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYND--EEDK-VTGGR 190 (2307)
Q Consensus 115 d~-gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~--~~yk-~sgGl 190 (2307)
++ ..|+|.|||+|||.+..+. +|.. |+. +|+.+ +.++ .+.|.
T Consensus 61 ~~~~~I~V~DnG~Gi~~~~l~~--------~f~~-~~t-------------------------sK~~~~~dl~~i~s~G~ 106 (365)
T 1h7s_A 61 YGVDLIEVSDNGCGVEEENFEG--------LTLK-HHT-------------------------SKIQEFADLTQVETFGF 106 (365)
T ss_dssp GGTSEEEEEECSCCCCGGGSGG--------GGC------------------------------------CCTTCSEEESS
T ss_pred CCcEEEEEEECCCCcCHHHHHH--------Hhhh-ccc-------------------------cccccccchhcccccCC
Confidence 32 3899999999999876542 2222 222 23221 2344 57899
Q ss_pred CcccccccccccceeEEEEEeecccEEEEEEee-cCCCcCCCccccCCCCCCCcEEEEEeCcccccccc-----c--C-H
Q psy7164 191 NGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWK-DNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTS-----L--D-K 261 (2307)
Q Consensus 191 hGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~-~g~~~~~~~~i~~~~~~~GT~VtF~PD~~iF~~~~-----f--~-~ 261 (2307)
||+|++.++++| +++|++........|.+.|. +|.... .......+||+|+|+ .+|.... | + .
T Consensus 107 rG~gl~si~~vs-~v~v~t~~~~~~~~~~~~~~~~G~~~~----~~~~~~~~GT~V~v~---~LF~n~P~R~k~flk~~~ 178 (365)
T 1h7s_A 107 RGEALSSLCALS-DVTISTCHASAKVGTRLMFDHNGKIIQ----KTPYPRPRGTTVSVQ---QLFSTLPVRHKEFQRNIK 178 (365)
T ss_dssp SSSHHHHHHHHS-EEEEEEECTTCSSCEEEEECTTSCEEE----EEECCCCSEEEEEEE---STTTTSHHHHHHHHHTHH
T ss_pred CCchhhhhhhhc-cEEEEEccCCCcceEEEEEcCCCceEe----ecccCCCCCcEEEEe---ecccccchhhhhhccchH
Confidence 999999999999 99999875333346888886 453211 112345789999997 3443211 2 0 0
Q ss_pred HHHHHHHHHHHHhhccCCCcEEEeccccC----------C-ccchHHHHHHHh
Q psy7164 262 DMVDLITRRAYDAAASTKDVKVFLNGEKL----------P-VKNFQDYVKLYT 303 (2307)
Q Consensus 262 d~l~~l~~Rl~dlA~LnpGLkI~lnder~----------~-~~G~~dYV~~~~ 303 (2307)
.....+..+++.+|+++||++|.|.+... + ..++.+.+..+.
T Consensus 179 ~e~~~i~~~v~~~al~~p~v~f~l~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 231 (365)
T 1h7s_A 179 KEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVF 231 (365)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEECTTSCEEEEEECCCCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhcCCceEEEEEecCCCCcEEEEEEcCCCchHHHHHHHhc
Confidence 11234568899999999999999986541 1 135777777655
No 53
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=99.27 E-value=3.3e-12 Score=131.57 Aligned_cols=93 Identities=15% Similarity=0.220 Sum_probs=76.2
Q ss_pred CCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCChhhHhhcCC-CCceeccCh
Q psy7164 1343 GGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKP-GDKIIKPEW 1421 (2307)
Q Consensus 1343 ~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~K~~~~k~-~~kIVkpeW 1421 (2307)
.++|+||+|||++|+.. +. +.....|..++..+||++...++..|||||+..-...+.+..++ +++||+|+|
T Consensus 5 ~p~f~g~vvyvd~~~~~--g~-----~~~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~~~~~~~~A~~~~i~iV~~~W 77 (107)
T 3pa6_A 5 APILKDVVAYVEVWSSN--GT-----ENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGYQSTWDKAQKRGVKLVSVLW 77 (107)
T ss_dssp CCTTTTCEEEEEEBCTT--SC-----CBCHHHHHHHHHHTTCEECSSCCTTCCEEEEESCCHHHHHHHHHHTCEEECHHH
T ss_pred ccccCCEEEEEeccCCC--Ch-----hhHHHHHHHHHHHcCCEEecccCCCccEEEEeCCCChHHHHHhcCCCEEECHHH
Confidence 36999999999999841 10 02456799999999999999999999999998755555444332 799999999
Q ss_pred HHHHHHhCCCCCCcCceeeec
Q psy7164 1422 IVDSISAGKLLDHKKYLLYTG 1442 (2307)
Q Consensus 1422 I~DSI~~gklLp~~~Y~l~~~ 1442 (2307)
|.||+++|+++|+.+|++...
T Consensus 78 v~~C~~~~~~vdE~~Y~i~~~ 98 (107)
T 3pa6_A 78 VEKCRTAGAHIDESLFPAANM 98 (107)
T ss_dssp HHHHHHHTSCCCGGGSBCCCT
T ss_pred HHHHHHhCccCChhcccCCCC
Confidence 999999999999999987553
No 54
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.22 E-value=7.3e-12 Score=158.98 Aligned_cols=191 Identities=20% Similarity=0.223 Sum_probs=122.5
Q ss_pred hhhhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCeEEEE
Q psy7164 32 VEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKIT 111 (2307)
Q Consensus 32 ~~~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~I~V~ 111 (2307)
+.+.++.++..|.++++|+||+.+.++ ..|.+++.|+|+||+|.....+....|.|.
T Consensus 4 L~~~~k~is~~eff~~~~~~~~~~~d~-----------------------~~L~qvl~nLv~NAida~~~gg~~p~I~I~ 60 (471)
T 1mu5_A 4 AKEKFTSLSPAEFFKRNPELAGFPNPA-----------------------RALYQTVRELIENSLDATDVHGILPNIKIT 60 (471)
T ss_dssp -------CCHHHHHHHCGGGTTCSSHH-----------------------HHHHHHHHHHHHHHHHTTGGGTCCCEEEEE
T ss_pred HHHHHhhcCHHHhhhcCCceEEEeCCH-----------------------HHHHHHHHHHHHHHHHHhhcCCCceEEEEE
Confidence 345778888899999999999988763 479999999999999986543333479999
Q ss_pred EEccC---C--eEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCcccc
Q psy7164 112 VNQET---N--TISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKV 186 (2307)
Q Consensus 112 i~~d~---g--sIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~ 186 (2307)
+..++ + .|+|.|||+|||.+..+ .+|..++++ +++. . ..
T Consensus 61 i~~~~~~~~~~~I~V~DnG~GI~~e~l~--------~iF~~f~~t-------------------------sk~~--~-~~ 104 (471)
T 1mu5_A 61 IDLIDDARQIYKVNVVDNGIGIPPQEVP--------NAFGRVLYS-------------------------SKYV--N-RQ 104 (471)
T ss_dssp EEEEETTTTEEEEEEECCSCCCCGGGHH--------HHHHCCCCC--------------------------CCC--C-SC
T ss_pred EEECCCcCcEEEEEEEECCCCCCHHHHH--------HHhcccccc-------------------------cccc--c-cc
Confidence 87642 2 79999999999987543 234333333 4542 1 13
Q ss_pred ccCCCcccccccccccce-----eEEEEEeecccEEEEEEeecCCC----cC-CCccccCCCCCCCcEEEEEeCcccccc
Q psy7164 187 TGGRNGYGAKLCNIFSSK-----FVVETSCSEYKKSFKQVWKDNMS----KV-TSPEIKSGSKDDFTKITFTPDLTKFKM 256 (2307)
Q Consensus 187 sgGlhGVGasvvNAlS~~-----f~Vev~~~~~gk~y~q~f~~g~~----~~-~~~~i~~~~~~~GT~VtF~PD~~iF~~ 256 (2307)
+.|.+|+|+++|+.+++. +.|++........|...+.-... .. ...........+||+|++. |..
T Consensus 105 ~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~-----l~~ 179 (471)
T 1mu5_A 105 TRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAIS-----IPG 179 (471)
T ss_dssp CSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEECCTTCCEEEEEEE-----EEC
T ss_pred CCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCcccccccccCCCCCCCEEEEEE-----EcC
Confidence 445699999999999998 78877542211244433321111 00 0111111134689999998 433
Q ss_pred cccCHHHHHHHHHHHHHhhccCCCcEEEeccc
Q psy7164 257 TSLDKDMVDLITRRAYDAAASTKDVKVFLNGE 288 (2307)
Q Consensus 257 ~~f~~d~l~~l~~Rl~dlA~LnpGLkI~lnde 288 (2307)
..... ...+..+++++|++||+++|.|.+.
T Consensus 180 ~~~e~--~~~I~~~l~~~al~~p~v~i~l~~~ 209 (471)
T 1mu5_A 180 DWPKA--KSRIYEYIKRTYIITPYAEFIFKDP 209 (471)
T ss_dssp CHHHH--HHHHHHHHHHHHHHCTTCEEEEECT
T ss_pred CcchH--HHHHHHHHHHHHhHCCCeEEEEEEC
Confidence 22222 2345688999999999999998764
No 55
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=99.14 E-value=5.9e-12 Score=148.79 Aligned_cols=96 Identities=19% Similarity=0.333 Sum_probs=74.1
Q ss_pred CCCCccceEEEE-eeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCC-----ccEEEeCCCChhhHhhcCCCCc
Q psy7164 1342 RGGIFQGVAIFV-NGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSR-----TTHIIASNLPHTKIKKLKPGDK 1415 (2307)
Q Consensus 1342 ~~~IF~G~~iyV-nGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~-----vTHIIas~l~~~K~~~~k~~~k 1415 (2307)
.++||+||.||| +|++++..+. ..++.+|..+|.+|||++..+.... +||||+...+.+.....+++++
T Consensus 2 ~s~lF~g~~f~v~~~~~~p~~~~-----~~~~~~L~~li~~~GG~~~~~~~~~t~~~~~~~iI~~~~t~k~~~~~~~~~~ 76 (264)
T 1z56_C 2 ISNIFAGLLFYVLSDYVTEDTGI-----RITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISCKTTTECKALIDRGYD 76 (264)
T ss_dssp -CCCCCTTCCCCSEEEECCCCCS-----SSSCCCTHHHHHHHHTTSCCCSSCCCCCSSCCEEEECSCCGGGGGGTTTTCC
T ss_pred ccccCCCcEEEEEcCCCCccccc-----cCCHHHHHHHHHHcCCEEeecCCCCccCccceEEEecCCcHHHHHHHhCCCC
Confidence 368999999999 9998611110 1278899999999999988765432 4899998855543333345799
Q ss_pred eeccChHHHHHHhCCCCCCcCceeeec
Q psy7164 1416 IIKPEWIVDSISAGKLLDHKKYLLYTG 1442 (2307)
Q Consensus 1416 IVkpeWI~DSI~~gklLp~~~Y~l~~~ 1442 (2307)
||+|+||+|||++|++||+++|.++..
T Consensus 77 vV~p~Wv~dci~~~~llp~~~y~~~~~ 103 (264)
T 1z56_C 77 ILHPNWVLDCIAYKRLILIEPNYCFNV 103 (264)
T ss_dssp CBCSSTTHHHHSSCSCCCCCSCBSCCC
T ss_pred EEechHHHHHhhcCCCCCCChHHhhcC
Confidence 999999999999999999999987753
No 56
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=99.13 E-value=4.8e-12 Score=161.36 Aligned_cols=65 Identities=34% Similarity=0.617 Sum_probs=41.6
Q ss_pred CCCCCCCCcCCCcchHHHhhhcccchhhhcccchhhhhhhHHHhhhccCCccceeeecccCCCCCCCCCCcccchhHHHH
Q psy7164 1183 KPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQLISLQQDKQLPAIQVISIRSPRARPPRRSSTMGSMFKQY 1262 (2307)
Q Consensus 1183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1262 (2307)
++.|+..+++.||+||++||+||||||||||+++ ||+|
T Consensus 5 ~~~~~~~~~~~~~~f~~~~~~~srlh~~~t~~~~------------------------------------------~~~~ 42 (504)
T 3gqc_A 5 KAAPSVPSKPSDCNFISNFYSHSRLHHISMWKCE------------------------------------------LTEF 42 (504)
T ss_dssp ----------CHHHHHHHHHHHCHHHHHHHHHHH------------------------------------------HHHH
T ss_pred ccCCccCCCCCCchHHHHHHhhhhHHHHHHHHHH------------------------------------------HHHH
Confidence 4456778999999999999999999999999999 8888
Q ss_pred HHHHhhccCccccchHHHHhhhccCCC
Q psy7164 1263 VNELREKHDGVFRGIEAIRKWKTSLGI 1289 (2307)
Q Consensus 1263 ~~~~~~~~~~~~~g~e~lrk~k~~~~~ 1289 (2307)
|++|+++.+|+|+++++++|+++.+.+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (504)
T 3gqc_A 43 VNTLQRQSNGIFPGREKLKKMKTGRSA 69 (504)
T ss_dssp HHHHTC-----CHHHHTTCC-------
T ss_pred HHHHHHhccCCCcchhhhhhhcccccc
Confidence 889998899999999999999888873
No 57
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.11 E-value=2.3e-11 Score=146.37 Aligned_cols=91 Identities=26% Similarity=0.368 Sum_probs=81.2
Q ss_pred CCCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEecc-CCccEEEeCCCChhhHhhcCC-CCceecc
Q psy7164 1342 RGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYES-SRTTHIIASNLPHTKIKKLKP-GDKIIKP 1419 (2307)
Q Consensus 1342 ~~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~-~~vTHIIas~l~~~K~~~~k~-~~kIVkp 1419 (2307)
+..+|+|++|+++|+.. +++.+|+++|..|||+|..+++ .+||||||.....+|....++ |++||+|
T Consensus 196 ~~~~f~g~~i~~tG~~~-----------~~r~~l~~li~~~GG~~~~~ls~~~~THLI~~~~~g~K~~~A~~~gi~IV~~ 264 (298)
T 3olc_X 196 KCPIFLGCIICVTGLCG-----------LDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEPKGQKYECAKRWNVHCVTT 264 (298)
T ss_dssp BCCTTTTCEEEECSCCH-----------HHHHHHHHHHHHTTCEECSSCCTTTCCEEECSSSCSHHHHHHHHTTCEEECH
T ss_pred cccccCCeEEEEeCCCC-----------ccHHHHHHHHHHcCCEEeceecCCCceEEEEeCCCchHHHHHHHCCCeEEeH
Confidence 45799999999999986 6789999999999999999998 789999999988888777653 8999999
Q ss_pred ChHHHHHHhCCCCCCcCceeeecC
Q psy7164 1420 EWIVDSISAGKLLDHKKYLLYTGT 1443 (2307)
Q Consensus 1420 eWI~DSI~~gklLp~~~Y~l~~~~ 1443 (2307)
+||.||+++|++|||.+|.+....
T Consensus 265 ~Wl~dsi~~g~~lde~~Y~l~~~~ 288 (298)
T 3olc_X 265 QWFFDSIEKGFCQDESIYKTEPRP 288 (298)
T ss_dssp HHHHHHHHHTSCCCGGGSBSCC--
T ss_pred HHHHHHHHCCCCCCchhcCCCCCc
Confidence 999999999999999999886543
No 58
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=99.08 E-value=1.2e-10 Score=137.85 Aligned_cols=97 Identities=20% Similarity=0.306 Sum_probs=75.0
Q ss_pred CCCCCccceEEEEeeeeccccccccccCCCCHHHH-HHHHHHcCCEEEEeccCCccEEEeCCCChh--hHh----hcCCC
Q psy7164 1341 SRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEEL-KALMMLHGGIYHHYESSRTTHIIASNLPHT--KIK----KLKPG 1413 (2307)
Q Consensus 1341 ~~~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL-~~li~~hGG~~~~~l~~~vTHIIas~l~~~--K~~----~~k~~ 1413 (2307)
.+..||+||+|||++|+. .+++.+.+...+.++ +.++..|||++..+++++|||||+...... ..+ .+.++
T Consensus 160 ~~~~lF~~~~vy~~~~~~--~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l~~~vTHVVv~~~~~r~~~~~~~~~~~~~~ 237 (263)
T 3ii6_X 160 SPLSMFRRHTVYLDSYAV--INDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRRTFKRK 237 (263)
T ss_dssp CGGGTTTTCEEEECCBSS--TTCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTTCCEEEECSCCTTHHHHHHHHHTCSSC
T ss_pred CcchhhCCeEEEEecccc--cCCcccccchhHHHHHHHHHHccCCEEecCCCCCceEEEECCCCccHHHHHHHHhhcCCC
Confidence 355899999999999975 344445555556664 777777999999999999999999863221 122 22236
Q ss_pred CceeccChHHHHHHhCCCCCCcCcee
Q psy7164 1414 DKIIKPEWIVDSISAGKLLDHKKYLL 1439 (2307)
Q Consensus 1414 ~kIVkpeWI~DSI~~gklLp~~~Y~l 1439 (2307)
.+||+|+||.|||++|++|||.+|++
T Consensus 238 ~~iV~~~Wv~dci~~~~~l~E~~Y~i 263 (263)
T 3ii6_X 238 FKILKESWVTDSIDKCELQEENQYLI 263 (263)
T ss_dssp CEEEETHHHHHHHHTTSCCCGGGTBC
T ss_pred CEEeChHHHHHHHHcCCcCCHhhCCC
Confidence 89999999999999999999999975
No 59
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=99.05 E-value=1.1e-10 Score=115.63 Aligned_cols=76 Identities=25% Similarity=0.427 Sum_probs=63.8
Q ss_pred CCCCCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEecc-CCccEEEeCCCChhhHhhcCCCCceec
Q psy7164 1340 DSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYES-SRTTHIIASNLPHTKIKKLKPGDKIIK 1418 (2307)
Q Consensus 1340 ~~~~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~-~~vTHIIas~l~~~K~~~~k~~~kIVk 1418 (2307)
..-++||.|++|||.+-+ |....|+++|+++||.+.+.++ +++||||+++ + +. .+.++|+
T Consensus 11 ~~LpdiFsg~~~~l~~~v------------~~~~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~-~-----~~-~~~~~V~ 71 (88)
T 3pc7_A 11 KVLLDIFTGVRLYLPPST------------PDFSRLRRYFVAFDGDLVQEFDMTSATHVLGSR-D-----KN-PAAQQVS 71 (88)
T ss_dssp CCCCCCSTTCEECCCTTS------------TTHHHHHHHHHHTTCEECCGGGGGGCSEEESCC-T-----TC-TTSEEEC
T ss_pred CcCChhhcCeEEEccCCc------------CchhhheeeeeecCCEEecccCCCcCeEEecCC-C-----cC-CCCcEEc
Confidence 356799999999996654 4457899999999999988666 5899999876 1 23 3799999
Q ss_pred cChHHHHHHhCCCCCC
Q psy7164 1419 PEWIVDSISAGKLLDH 1434 (2307)
Q Consensus 1419 peWI~DSI~~gklLp~ 1434 (2307)
|+||.|||++|+|||.
T Consensus 72 p~WI~dcI~k~~Ll~~ 87 (88)
T 3pc7_A 72 PEWIWACIRKRRLVAP 87 (88)
T ss_dssp HHHHHHHHHHTSCCSC
T ss_pred hHHHHHHHhCCcccCC
Confidence 9999999999999985
No 60
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=98.96 E-value=3.1e-10 Score=140.05 Aligned_cols=91 Identities=26% Similarity=0.398 Sum_probs=79.2
Q ss_pred CCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCChhhHhhcCC--CCceeccC
Q psy7164 1343 GGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKP--GDKIIKPE 1420 (2307)
Q Consensus 1343 ~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~K~~~~k~--~~kIVkpe 1420 (2307)
+.+|+||+|+++|+... +.+ |.+.+|.+++..+||++...++.+||||||.....+|....++ +++||+|+
T Consensus 280 ~~~L~G~~ivfSG~~~~--~~~-----~~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~~~t~K~~~A~~~~~I~IV~~~ 352 (372)
T 3ef0_A 280 QKVLKGCRLLFSGVIPL--GVD-----VLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLN 352 (372)
T ss_dssp TTTSTTCEEEEESSSCT--TSC-----TTTSHHHHHHHHTTCEEESSSSSCCSEEEECSCCCHHHHHHHHSSSCCEEEHH
T ss_pred hhhcCCcEEEEecccCC--Ccc-----hhHHHHHHHHHHcCCEEeCcCCCCceEEEEcCCCchHHHHHHhcCCCEEEcHH
Confidence 47999999999999741 112 6678999999999999999999999999999877777665543 68999999
Q ss_pred hHHHHHHhCCCCCCcCceee
Q psy7164 1421 WIVDSISAGKLLDHKKYLLY 1440 (2307)
Q Consensus 1421 WI~DSI~~gklLp~~~Y~l~ 1440 (2307)
||.||++.++++||.+|+||
T Consensus 353 Wl~~c~~~~~~vdE~~Y~l~ 372 (372)
T 3ef0_A 353 WLTESLSQWKRLPESDYLLY 372 (372)
T ss_dssp HHHHHHHTTSCCCGGGGBCC
T ss_pred HHHHHHHhCCcCChhhceeC
Confidence 99999999999999999986
No 61
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=98.92 E-value=3.5e-10 Score=141.20 Aligned_cols=90 Identities=26% Similarity=0.388 Sum_probs=79.2
Q ss_pred CCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCChhhHhhcCC--CCceeccCh
Q psy7164 1344 GIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKP--GDKIIKPEW 1421 (2307)
Q Consensus 1344 ~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~K~~~~k~--~~kIVkpeW 1421 (2307)
++|+||+|+++|+.... ..|++.+|..++..+||+|...++.+|||+||......|....++ +++||+|+|
T Consensus 351 ~~L~G~~IvfSG~~p~~-------~~~~r~~l~~~~~~lGa~~~~~vs~~vTHLVa~~~~t~K~~~A~~~g~IkIVs~~W 423 (442)
T 3ef1_A 351 KVLKGCRLLFSGVIPLG-------VDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNW 423 (442)
T ss_dssp TTSTTCEEEEESSSCTT-------SCSTTSHHHHHHHTTTCEECSSSSSCCSEEEECSCCCHHHHHHHHHSSSEEEEHHH
T ss_pred cccCCcEEEEecccCCC-------CCccHHHHHHHHHHcCCEEeCCCCCCceEEEeCCCCCHHHHHHHhcCCCEEEeHHH
Confidence 59999999999998411 126788999999999999999999999999999877777776554 589999999
Q ss_pred HHHHHHhCCCCCCcCceee
Q psy7164 1422 IVDSISAGKLLDHKKYLLY 1440 (2307)
Q Consensus 1422 I~DSI~~gklLp~~~Y~l~ 1440 (2307)
|.||++.++++||.+|+||
T Consensus 424 L~dcl~~~krldE~~YlLy 442 (442)
T 3ef1_A 424 LTESLSQWKRLPESDYLLY 442 (442)
T ss_dssp HHHHHHHTSCCCGGGTBCC
T ss_pred HHHHHHcCCcCChhccccC
Confidence 9999999999999999986
No 62
>3ku8_A GYRA14, DNA gyrase subunit A; alpha+beta, SH3 domain, topoisomerase, toxin-isomerase compl; HET: DNA; 1.93A {Escherichia coli} PDB: 4ely_A* 1x75_A* 3kua_A* 4elz_A*
Probab=98.84 E-value=2.1e-09 Score=116.58 Aligned_cols=96 Identities=9% Similarity=0.044 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHh------------------hhhHHHhhcc--cCCCchHHHHHHHhh----------ccccc---cc-
Q psy7164 793 YKIDDDSEEEEIEE------------------VFHDNELAKP--QKTGPQLERQERQAA----------EGEDD---EA- 838 (2307)
Q Consensus 793 ~~~Rl~~y~rr~e~------------------l~ni~~li~~--~~~d~~~a~~~~~~~----------~~~~~---~~- 838 (2307)
+-||.++++||+.| +.|++++|++ .++++..|+...... ..... ..
T Consensus 14 ~~hR~eVVtRRt~f~L~Ka~~R~HILEGL~iAl~nIDeVI~iIR~S~~~~eAk~~Lm~~~w~~~~v~~~~~~~~~~~~~p 93 (156)
T 3ku8_A 14 LVPRGSHMTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARP 93 (156)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCSSHHHHHHHHHHSCEECTTHHHHGGGSSTTTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHhccccchhHHHHHHHhhhhcccc
Confidence 45888888887766 6668999988 777777776655431 00000 00
Q ss_pred -------cccCCCCCCChhhHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHcc
Q psy7164 839 -------GSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKK 888 (2307)
Q Consensus 839 -------~~~~~~~~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~el~~ei~~L~~~ 888 (2307)
......|.+++.|++|||+|+|+|||++|++||++|+++|.++|++|+.+
T Consensus 94 ~~~~~~~~~~~~~f~LSe~QA~AILdmRL~rLT~LE~~ki~~E~~eL~~~I~~l~~I 150 (156)
T 3ku8_A 94 EWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRI 150 (156)
T ss_dssp TTCCTTSEEETTEEECCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccchhccccccCCCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00113578999999999999999999999999999999999999999987
No 63
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=98.76 E-value=3.1e-09 Score=120.99 Aligned_cols=83 Identities=28% Similarity=0.476 Sum_probs=68.8
Q ss_pred CCCCCccce-EEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCChhhHhhcCCCCceecc
Q psy7164 1341 SRGGIFQGV-AIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKPGDKIIKP 1419 (2307)
Q Consensus 1341 ~~~~IF~G~-~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~K~~~~k~~~kIVkp 1419 (2307)
..+.+|+|+ ++|+++++. |+.++|+.||..|||++...+. .+++||+.. ..++ ..+.++|+|
T Consensus 115 ~~~~LF~g~~~~~v~~~~~-----------~~~~~L~~lI~~~GG~v~~~~~-~~~iiI~~~-~~~~----~~~~~~V~p 177 (199)
T 3u3z_A 115 YRGTLFADQPVMFVSPASS-----------PPVAKLCELVHLCGGRVSQVPR-QASIVIGPY-SGKK----KATVKYLSE 177 (199)
T ss_dssp CCCCTTTTSCCEEECTTCS-----------SCHHHHHHHHHHTTCCBCSSGG-GCSEEESCC-CSCC----CTTCEEECH
T ss_pred ccchhhCCCeEEEECCCCC-----------CCHHHHHHHHHHcCCEEeccCC-CCEEEEeCC-chhc----cCCCcEECh
Confidence 356899999 688999886 8999999999999999999885 366667543 3221 237899999
Q ss_pred ChHHHHHHhCCCCCCcCceee
Q psy7164 1420 EWIVDSISAGKLLDHKKYLLY 1440 (2307)
Q Consensus 1420 eWI~DSI~~gklLp~~~Y~l~ 1440 (2307)
+||+|||.++++||+++|++-
T Consensus 178 ~Wi~DsI~~~~llp~~~Y~~~ 198 (199)
T 3u3z_A 178 KWVLDSITQHKVCAPENYLLS 198 (199)
T ss_dssp HHHHHHHHHTSCCCGGGGBCC
T ss_pred hHHHHHHHcCCcCChHhccCC
Confidence 999999999999999999874
No 64
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=98.76 E-value=1.8e-09 Score=111.21 Aligned_cols=90 Identities=17% Similarity=0.365 Sum_probs=66.1
Q ss_pred CCCCCccceEEEEeeeeccccccccccCCCCHHH-HHHHHHHcCCEEEEeccCCccEEEeCC-CChhh------HhhcCC
Q psy7164 1341 SRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEE-LKALMMLHGGIYHHYESSRTTHIIASN-LPHTK------IKKLKP 1412 (2307)
Q Consensus 1341 ~~~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~e-L~~li~~hGG~~~~~l~~~vTHIIas~-l~~~K------~~~~k~ 1412 (2307)
....+|+||+||+--+-. ..++.+ ...++..+||++...++..|||||+.. .+.+- ...+..
T Consensus 7 ~~~~~F~g~~v~~~p~~~----------~~~r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd~~~s~~~~l~~l~~~~l~~ 76 (106)
T 2jw5_A 7 EAEEWLSSLRAHVVRTGI----------GRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRLPQLPP 76 (106)
T ss_dssp CGGGCGGGSCCCBCTTTC----------CSSSTTHHHHHHHHTTCCCCSTTCTTCCEEEECSSSCHHHHHHHTTCSSCCS
T ss_pred cCcCEeCCeEEEEEecCC----------chHHHHHHHHHHHHcCCEEeeccCCCccEEEEcCCCCHHHHHHHHhhcccCC
Confidence 456899999999832211 123334 455777799999999988999999974 33221 112223
Q ss_pred CCceeccChHHHHHHhCCCCCCcCceee
Q psy7164 1413 GDKIIKPEWIVDSISAGKLLDHKKYLLY 1440 (2307)
Q Consensus 1413 ~~kIVkpeWI~DSI~~gklLp~~~Y~l~ 1440 (2307)
+.+||+++|+.||+++|++|++.+|.+.
T Consensus 77 ~~~iV~~~Wv~dci~~~~llde~~y~~~ 104 (106)
T 2jw5_A 77 GAQLVKSAWLSLCLQERRLVDVAGFSIF 104 (106)
T ss_dssp SCEEEEHHHHHHHHHTCSCCCGGGTBCS
T ss_pred CcEEecCchHHHHHhcCcccCccccccc
Confidence 6799999999999999999999999753
No 65
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=1e-08 Score=107.23 Aligned_cols=91 Identities=19% Similarity=0.256 Sum_probs=69.9
Q ss_pred CCCCCccceEEEEeeeeccccccccccCCCCHHH-HHHHHHHcCCEEEEeccCCccEEEeCCCChhhHhhcC--------
Q psy7164 1341 SRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEE-LKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLK-------- 1411 (2307)
Q Consensus 1341 ~~~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~e-L~~li~~hGG~~~~~l~~~vTHIIas~l~~~K~~~~k-------- 1411 (2307)
....+|+||+||+..+-- ..++.+ +.+++..|||++...++.+|||||+.+...+.+..+.
T Consensus 16 ~p~~~F~g~~iy~v~~~~----------g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve~~~~~e~~~~l~~~~l~~~ 85 (120)
T 2coe_A 16 PQDIKFQDLVVFILEKKM----------GTTRRALLMELARRKGFRVENELSDSVTHIVAENNSGSDVLEWLQAQKVQVS 85 (120)
T ss_dssp SSCCSCTTCEEEEECTTT----------CHHHHHHHHHHHHHHTCEECSSCCTTCCEEEESSCCHHHHHHHHHHCCCCCS
T ss_pred CcccccCCeEEEEeeccc----------chHHHHHHHHHHHHcCCEEeeccCCCcCEEEecCCCHHHHHHHHhccccccc
Confidence 345799999999977742 234545 6777777999999999999999999865543222211
Q ss_pred CCCceeccChHHHHHHhCCCCCCcCceeee
Q psy7164 1412 PGDKIIKPEWIVDSISAGKLLDHKKYLLYT 1441 (2307)
Q Consensus 1412 ~~~kIVkpeWI~DSI~~gklLp~~~Y~l~~ 1441 (2307)
.+.+||+.+|+.||+++|+++|++.|-+..
T Consensus 86 ~~~~lv~i~Wl~esmk~g~lv~ee~~~~l~ 115 (120)
T 2coe_A 86 SQPELLDVSWLIECIGAGKPVEMTGKHQLS 115 (120)
T ss_dssp SCCEEEEHHHHHHHHHTTSCCCCSSSSBCC
T ss_pred cccEEeecHHHHHHHHcCCccCcccceEec
Confidence 158999999999999999999997765544
No 66
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=98.67 E-value=1.7e-08 Score=119.35 Aligned_cols=102 Identities=19% Similarity=0.167 Sum_probs=72.5
Q ss_pred CCCCCccceEEEEeeeeccccccc--ccc----------------CCCCHHHHHHHHHHcCCEEEEeccCC------ccE
Q psy7164 1341 SRGGIFQGVAIFVNGYTKHCMMLD--AYY----------------IVPSAEELKALMMLHGGIYHHYESSR------TTH 1396 (2307)
Q Consensus 1341 ~~~~IF~G~~iyVnGyt~~~~~~~--~~~----------------~~ps~~eL~~li~~hGG~~~~~l~~~------vTH 1396 (2307)
..+.||.|+.|+|.+.+...-.+. .+. ..-+..+|+++|..|||.+...+... +||
T Consensus 11 ~~~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~~t~ 90 (259)
T 1kzy_C 11 LNKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQCL 90 (259)
T ss_dssp SSTTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTCEEE
T ss_pred CCCcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCCCeE
Confidence 346899999999988764210000 000 01256899999999999999877643 699
Q ss_pred EEeCCCC-hhhHh-hcCCCCceeccChHHHHHHhCCCCCCcCceeeec
Q psy7164 1397 IIASNLP-HTKIK-KLKPGDKIIKPEWIVDSISAGKLLDHKKYLLYTG 1442 (2307)
Q Consensus 1397 IIas~l~-~~K~~-~~k~~~kIVkpeWI~DSI~~gklLp~~~Y~l~~~ 1442 (2307)
+|+.... ..|.. -+..|..||+++||.||+++|+++||.+|+|-.+
T Consensus 91 LIa~~~~rt~K~l~ala~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~~g 138 (259)
T 1kzy_C 91 LIADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLLPAG 138 (259)
T ss_dssp EEESSCCCSHHHHHHHHHTCCEEETHHHHHHHHHTSCCCGGGSBCCCE
T ss_pred EEcCCCCCcHHHHHHHhcCCCCccHHHHHHHHHcCCcCCHHHccCCCC
Confidence 9998622 22322 2223899999999999999999999999998654
No 67
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=98.63 E-value=2.3e-08 Score=117.04 Aligned_cols=92 Identities=17% Similarity=0.297 Sum_probs=70.5
Q ss_pred CCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEe-----c--cC-------------------CccEE
Q psy7164 1344 GIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHY-----E--SS-------------------RTTHI 1397 (2307)
Q Consensus 1344 ~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~-----l--~~-------------------~vTHI 1397 (2307)
.||+|++|+|+|.... -.....+|.++|.+|||++... + .. ..|||
T Consensus 1 ~lF~g~~F~ls~~~~~--------~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~l 72 (241)
T 2vxb_A 1 LIFDDCVFAFSGPVHE--------DAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFV 72 (241)
T ss_dssp CTTTTEEEEECCCSST--------TSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEE
T ss_pred CCCCCcEEEEecCCCC--------chhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEE
Confidence 4899999999988320 0147899999999999999774 2 11 24999
Q ss_pred EeCCCC-hhhHhh-cCCCCceeccChHHHHHHhCCCCCCcCceeeecC
Q psy7164 1398 IASNLP-HTKIKK-LKPGDKIIKPEWIVDSISAGKLLDHKKYLLYTGT 1443 (2307)
Q Consensus 1398 Ias~l~-~~K~~~-~k~~~kIVkpeWI~DSI~~gklLp~~~Y~l~~~~ 1443 (2307)
|+.... ..|... +..|.+||+|+||.||+++|+++||.+|+|-.+.
T Consensus 73 ia~~~~rt~K~~~ala~gipiV~~~Wi~dc~~~~~~~~~~~ylL~~~~ 120 (241)
T 2vxb_A 73 VSDTFSRKVKYLEALAFNIPCVHPQFIKQCLKMNRVVDFSPYLLASGY 120 (241)
T ss_dssp ECSSCCCCHHHHHHHHHTCCEECTHHHHHHHHHTSCCCSGGGBBEEEE
T ss_pred EcCCCCCcHHHHHHHHcCCCEecHHHHHHHHHcCCcCChhhccCCCCc
Confidence 998744 223322 2238999999999999999999999999997654
No 68
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=98.63 E-value=6.2e-09 Score=122.99 Aligned_cols=90 Identities=18% Similarity=0.277 Sum_probs=50.5
Q ss_pred CCCCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCC---hh---hHh-hcCC-
Q psy7164 1341 SRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLP---HT---KIK-KLKP- 1412 (2307)
Q Consensus 1341 ~~~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~---~~---K~~-~~k~- 1412 (2307)
....||+||+||++|++. .....-|+.+|..|||++...++..+||||+.... .. +.. .+..
T Consensus 156 ~~~~lF~g~~~yl~~~~~----------~~~~~~l~~~i~~~GG~v~~~l~~~t~hVV~~~~~~~~~~~~~~~~~~~~~~ 225 (264)
T 1z56_C 156 FPLFLFSNRIAYVPRRKI----------STEDDIIEMKIKLFGGKITDQQSLCNLIIIPYTDPILRKDCMNEVHEKIKEQ 225 (264)
T ss_dssp CCCC------------------------------CHHHHHHHTTSCCCCSSSCSEEECCCSSTTTHHHHSSHHHHTTTTT
T ss_pred CchhhhCCeEEEEecCCC----------chhHHHHHHHHHHcCCEEecccCCCEEEEEeCCCccchHHHHHHHHHHHHhh
Confidence 445799999999999863 02344567889999999999998777888875422 11 111 1111
Q ss_pred --------C-CceeccChHHHHHHhCCCCCCcCceee
Q psy7164 1413 --------G-DKIIKPEWIVDSISAGKLLDHKKYLLY 1440 (2307)
Q Consensus 1413 --------~-~kIVkpeWI~DSI~~gklLp~~~Y~l~ 1440 (2307)
+ .+||+|+||.|||++|++||+.+|++.
T Consensus 226 ~~~~~~~~~~~~iV~~~Wv~dci~~~~ll~e~~Y~~~ 262 (264)
T 1z56_C 226 IKASDTIPKIARVVAPEWVDHSINENCQVPEEDFPVV 262 (264)
T ss_dssp TTSSSSCCCCCEEECTHHHHHHHTTSCCCSSCCC---
T ss_pred cccccccCCCCEEecHHHHHHHHHcCCcCCHHHcCCC
Confidence 2 499999999999999999999999764
No 69
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=98.54 E-value=4.9e-08 Score=112.68 Aligned_cols=87 Identities=18% Similarity=0.227 Sum_probs=71.9
Q ss_pred CCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCC------hhhHh-hcCCCCce
Q psy7164 1344 GIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLP------HTKIK-KLKPGDKI 1416 (2307)
Q Consensus 1344 ~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~------~~K~~-~~k~~~kI 1416 (2307)
.-+++++|+++|+.. .....|.+++..+||.+...+++.|||||+.... ..|.. -+..|..|
T Consensus 3 ~~~~~~~i~~sg~~~-----------~~~~~l~~~~~~~G~~~~~~~~~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~I 71 (229)
T 1l0b_A 3 RAERDISMVVSGLTP-----------KEVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWI 71 (229)
T ss_dssp CCCCCCEEEEESCCH-----------HHHHHHHHHHHHTTCEECSSCCSSCCEEEECBCTTSEECCCHHHHHHHHTTCEE
T ss_pred CCCCCeEEEEcCCCH-----------HHHHHHHHHHHHcCCEEeCCcCCCCCEEEEcCCccccccccHHHHHHHHCCCcE
Confidence 468899999999975 3466899999999999999999999999998742 22322 12248899
Q ss_pred eccChHHHHHHhCCCCCCcCceeee
Q psy7164 1417 IKPEWIVDSISAGKLLDHKKYLLYT 1441 (2307)
Q Consensus 1417 VkpeWI~DSI~~gklLp~~~Y~l~~ 1441 (2307)
|+|+||.||+++|+++|+.+|.+..
T Consensus 72 V~~~Wl~~~~~~~~~~~e~~y~~~~ 96 (229)
T 1l0b_A 72 VSYSWVIKSIQERKLLSVHEFEVKG 96 (229)
T ss_dssp EETHHHHHHHTTTSCCCSGGGBCCE
T ss_pred ecHHHHHHHHHCCCcCChHHeEecc
Confidence 9999999999999999999998765
No 70
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=98.52 E-value=5e-08 Score=111.19 Aligned_cols=84 Identities=17% Similarity=0.244 Sum_probs=68.7
Q ss_pred cceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCC------hhhH-hhcCCCCceecc
Q psy7164 1347 QGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLP------HTKI-KKLKPGDKIIKP 1419 (2307)
Q Consensus 1347 ~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~------~~K~-~~~k~~~kIVkp 1419 (2307)
+|++|.++|... .....|.+++.++||.+...++..|||||+.... ..|. .-+..|..||+|
T Consensus 3 ~~~~~~~sg~~~-----------~~~~~l~~~~~~~G~~~~~~~~~~~THli~~~~~~~~~~rt~k~~~a~~~g~~IV~~ 71 (214)
T 1t15_A 3 KRMSMVVSGLTP-----------EEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSY 71 (214)
T ss_dssp -CCEEEEESCCH-----------HHHHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEET
T ss_pred CcEEEEECCCCH-----------HHHHHHHHHHHHhCCEEeCccCCCCcEEEEeCCcccchhhhHHHHHHHhcCCEEeCH
Confidence 578999999874 3567899999999999999999999999998742 2232 222248899999
Q ss_pred ChHHHHHHhCCCCCCcCceeee
Q psy7164 1420 EWIVDSISAGKLLDHKKYLLYT 1441 (2307)
Q Consensus 1420 eWI~DSI~~gklLp~~~Y~l~~ 1441 (2307)
+||.||+++|+++|+.+|.+..
T Consensus 72 ~Wl~~~~~~~~~~~e~~y~~~~ 93 (214)
T 1t15_A 72 FWVTQSIKERKMLNEHDFEVRG 93 (214)
T ss_dssp HHHHHHHHTTSCCCGGGGBCCE
T ss_pred HHHHHHHHCCCcCChHHeEeec
Confidence 9999999999999999998864
No 71
>1unn_C POL IV, DNA polymerase IV; beta-clamp, translesion, transferase, DNA-directed D polymerase, DNA replication; HET: DNA; 1.9A {Escherichia coli} SCOP: d.240.1.1
Probab=98.52 E-value=2.5e-07 Score=96.30 Aligned_cols=99 Identities=19% Similarity=0.191 Sum_probs=86.6
Q ss_pred cccEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhccccceEEE---EEEEEecCCCcccccccccCceeeeecceecc
Q psy7164 2045 KSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCIT---LKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121 (2307)
Q Consensus 2045 KSIs~e~nfg~r~~~~eel~~~L~~La~eL~~RLr~~~~~~r~LT---LkL~~R~~~Ap~ep~K~lGhG~cD~~skS~~L 2121 (2307)
..++.|.+|+.++.+.+++...|..||++++.||++.+ .+++|+ |+|++..+ ...+++...
T Consensus 5 ~~~g~e~Tf~~d~~~~~~l~~~l~~l~~~v~~rLr~~~-~~~tV~k~~vkir~~dF---------------~~~trs~t~ 68 (115)
T 1unn_C 5 HHVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVK-PDLLIARQGVKLKFDDF---------------QQTTQEHVW 68 (115)
T ss_dssp CEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHC-TTCBCSEEEEEEEETTS---------------CEEEEEEEC
T ss_pred CCCccceECCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCCeEEEeEEEEEECCC---------------CeEEecccc
Confidence 35899999999999999999999999999999999999 999999 99998433 124555557
Q ss_pred CcCChhHHHHHHHHHHhhhcCCCCCceEEeeeecccccc
Q psy7164 2122 PIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITK 2160 (2307)
Q Consensus 2122 pt~~~~~L~~aA~~lL~~i~~~~~~yr~~Gv~l~dl~sk 2160 (2307)
|+++...|.++|..+++.++ .+.++|.+||++.++.+.
T Consensus 69 pt~~~~~i~~~a~~Ll~~~~-~~~~vRllGV~ls~L~~~ 106 (115)
T 1unn_C 69 PRLNKADLIATARKTWDERR-GGRGVRLVGLHVTLLDPQ 106 (115)
T ss_dssp SBCCHHHHHHHHHHHHHHHC-TTCCEEEEEEEEECCCCC
T ss_pred CcCCHHHHHHHHHHHHHhhh-cCCCEEEEEEEEeCCCCC
Confidence 99999999999999999988 678999999999887663
No 72
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=98.48 E-value=1.1e-07 Score=108.46 Aligned_cols=89 Identities=19% Similarity=0.279 Sum_probs=66.7
Q ss_pred CCCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCC-----ccEEEeCCCC----hhhHhhc--
Q psy7164 1342 RGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSR-----TTHIIASNLP----HTKIKKL-- 1410 (2307)
Q Consensus 1342 ~~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~-----vTHIIas~l~----~~K~~~~-- 1410 (2307)
.+.+|+|+.||+.|... .+++.+|..+|..+||++...+... +.+||...-. ..+...+
T Consensus 112 ~~~lF~g~~~~~~~~~~----------~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~~~~~~~~~a~ 181 (214)
T 1t15_A 112 DRKIFRGLEICCYGPFT----------NMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQ 181 (214)
T ss_dssp TSCTTTTCEEEECSCCS----------SSCHHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCSSCGGGGSSTT
T ss_pred CCcccCCCEEEEEecCC----------CCCHHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCcccchhhHHHHHH
Confidence 45799999999977542 2789999999999999999988642 2345443211 1122222
Q ss_pred CCCCceeccChHHHHHHhCCCCCCcCceee
Q psy7164 1411 KPGDKIIKPEWIVDSISAGKLLDHKKYLLY 1440 (2307)
Q Consensus 1411 k~~~kIVkpeWI~DSI~~gklLp~~~Y~l~ 1440 (2307)
+.+.+||+|+||+|||.+++++|+++|+|-
T Consensus 182 ~~~~~iV~~~Wi~dsi~~~~~l~~~~Y~l~ 211 (214)
T 1t15_A 182 MCEAPVVTREWVLDSVALYQCQELDTYLIP 211 (214)
T ss_dssp TCSSCEEEHHHHHHHHHHTSCCCSGGGBCC
T ss_pred hcCCcEEeccHHHHhHhhcCcCCCcceeec
Confidence 137899999999999999999999999774
No 73
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=98.46 E-value=8.5e-08 Score=109.61 Aligned_cols=83 Identities=17% Similarity=0.189 Sum_probs=68.3
Q ss_pred ceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCC---ChhhH-hhcCCCCceeccChHH
Q psy7164 1348 GVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNL---PHTKI-KKLKPGDKIIKPEWIV 1423 (2307)
Q Consensus 1348 G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l---~~~K~-~~~k~~~kIVkpeWI~ 1423 (2307)
|++|.++|+.. ..+..|.+++.++||.+...+++.|||||+..- ...|. .-+..|..||+|+||.
T Consensus 2 ~~vi~~sg~~~-----------~~~~~l~~~~~~~G~~~~~~~~~~~THlV~~~~~~~rt~K~l~a~~~g~~IV~~~Wl~ 70 (210)
T 2nte_A 2 PLVLIGSGLSS-----------EQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVK 70 (210)
T ss_dssp CCEEEESSCCH-----------HHHHHHHHHHHHTTCEEESSCCTTCCEEEESSSSCCCSHHHHHHHHTTCEEEETHHHH
T ss_pred CEEEEECCCCH-----------HHHHHHHHHHHHcCCEEeCCCCCCCeEEEEcCCCcchHHHHHHHHhcCCEEecHHHHH
Confidence 68899999875 456789999999999999999999999999762 12232 2222489999999999
Q ss_pred HHHHhCCCCCCcCceeee
Q psy7164 1424 DSISAGKLLDHKKYLLYT 1441 (2307)
Q Consensus 1424 DSI~~gklLp~~~Y~l~~ 1441 (2307)
||+++|+++|+.+|.+..
T Consensus 71 ~c~~~~~~~~e~~y~~~~ 88 (210)
T 2nte_A 71 ACLRRKVCEQEEKYEIPE 88 (210)
T ss_dssp HHHHHTSCCCGGGTBCTT
T ss_pred HHHHcCCcCChhhccCCC
Confidence 999999999999998863
No 74
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=98.41 E-value=1.8e-07 Score=108.00 Aligned_cols=88 Identities=18% Similarity=0.290 Sum_probs=62.0
Q ss_pred CCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccC-----CccEE-EeCCC---ChhhHhhcC--C
Q psy7164 1344 GIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESS-----RTTHI-IASNL---PHTKIKKLK--P 1412 (2307)
Q Consensus 1344 ~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~-----~vTHI-Ias~l---~~~K~~~~k--~ 1412 (2307)
.+|+|+.||+.|... .|+..+|.++|..+||++...+.. .++|+ |+..- ...+...+. .
T Consensus 116 ~lF~g~~~~~~~~~~----------~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~~l~~~~ 185 (229)
T 1l0b_A 116 KLFEGLQIYCCEPFT----------NMPKDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIGQLC 185 (229)
T ss_dssp -CCTTCEEEECSCCS----------SSCHHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC-----------------
T ss_pred hhhcCceEEEEecCC----------CCCHHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccchhhhHHHHHHHc
Confidence 799999999987532 278999999999999999998864 25774 44421 122333331 3
Q ss_pred CCceeccChHHHHHHhCCCCCCcCceeee
Q psy7164 1413 GDKIIKPEWIVDSISAGKLLDHKKYLLYT 1441 (2307)
Q Consensus 1413 ~~kIVkpeWI~DSI~~gklLp~~~Y~l~~ 1441 (2307)
+.+||+++||+|||.+++++|+++|+|..
T Consensus 186 ~i~iVs~~WlldsI~~~~~~~~~~Y~l~~ 214 (229)
T 1l0b_A 186 KGRLVMWDWVLDSISVYRCRDLDAYLVQN 214 (229)
T ss_dssp --CEEETHHHHHHHHTTSCCCGGGGBCC-
T ss_pred CCeEeehhHHHHHHhcCCcCCccceEccc
Confidence 78999999999999999999999998764
No 75
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=98.34 E-value=2.2e-07 Score=107.28 Aligned_cols=85 Identities=20% Similarity=0.404 Sum_probs=70.1
Q ss_pred CccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCCh-hhHhh-cCCCCceeccChH
Q psy7164 1345 IFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPH-TKIKK-LKPGDKIIKPEWI 1422 (2307)
Q Consensus 1345 IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~-~K~~~-~k~~~kIVkpeWI 1422 (2307)
-..|++|.++|+.. ....+|++++..+||.+.... .+|||+|+..... .|... +..|..||+|+||
T Consensus 13 ~~~~~~i~~SG~~~-----------~~~~~l~~~i~~lGg~v~~~~-~~~THLI~~~~~rT~K~l~A~~~g~~IVs~~Wl 80 (219)
T 3sqd_A 13 PELTPFVLFTGFEP-----------VQVQQYIKKLYILGGEVAESA-QKCTHLIASKVTRTVKFLTAISVVKHIVTPEWL 80 (219)
T ss_dssp GGGCCEEEECSCCH-----------HHHHHHHHHHHHTTCEECSSG-GGCSEEECSSCCCCHHHHHHTTTCSEEECHHHH
T ss_pred CCCCeEEEEeCCCh-----------HHHHHHHHHHHHCCCEEeCCC-CCceEEEECCCCCCHHHHHHHHcCCCEecHHHH
Confidence 57899999999975 445789999999999998775 7799999987432 24333 3348899999999
Q ss_pred HHHHHhCCCCCCcCceeee
Q psy7164 1423 VDSISAGKLLDHKKYLLYT 1441 (2307)
Q Consensus 1423 ~DSI~~gklLp~~~Y~l~~ 1441 (2307)
.||+++|+++|+++|.+.+
T Consensus 81 ~~c~~~~~~l~e~~y~l~d 99 (219)
T 3sqd_A 81 EECFRCQKFIDEQNYILRD 99 (219)
T ss_dssp HHHHHHTSCCCSGGGBCCC
T ss_pred HHHHHcCCCCChHhccCCC
Confidence 9999999999999999865
No 76
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=98.30 E-value=4.3e-07 Score=105.91 Aligned_cols=85 Identities=13% Similarity=0.216 Sum_probs=68.9
Q ss_pred ccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEE--eccCCccEEEeCCCC-hhh-HhhcCCCCceeccCh
Q psy7164 1346 FQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHH--YESSRTTHIIASNLP-HTK-IKKLKPGDKIIKPEW 1421 (2307)
Q Consensus 1346 F~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~--~l~~~vTHIIas~l~-~~K-~~~~k~~~kIVkpeW 1421 (2307)
=++.+|.++|+.+ ....+|.++|..+||.+.. .++.+|||+|+.... ..| ..-+..|..||+|+|
T Consensus 7 ~~~~~~~~Sg~~~-----------~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~RT~K~l~aia~G~wIvs~~w 75 (235)
T 3al2_A 7 KKQYIFQLSSLNP-----------QERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSY 75 (235)
T ss_dssp -CCCEEEEESCCH-----------HHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCCCSHHHHHHHHTTCEEECTHH
T ss_pred CCCEEEEEcCCCH-----------HHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCCCCHHHHHHHHcCCcCccHHH
Confidence 3678899999975 4567899999999999976 577899999998753 223 222334899999999
Q ss_pred HHHHHHhCCCCCCcCceeee
Q psy7164 1422 IVDSISAGKLLDHKKYLLYT 1441 (2307)
Q Consensus 1422 I~DSI~~gklLp~~~Y~l~~ 1441 (2307)
|.||+++|+.||+.+|.+..
T Consensus 76 l~~s~~~g~~l~E~~ye~~~ 95 (235)
T 3al2_A 76 LEACRTAGHFVQEEDYEWGS 95 (235)
T ss_dssp HHHHHHHTSCCCSGGGBTTS
T ss_pred HHHHHHcCCCCChhceeecC
Confidence 99999999999999998754
No 77
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=98.29 E-value=2.7e-07 Score=111.12 Aligned_cols=84 Identities=20% Similarity=0.268 Sum_probs=72.6
Q ss_pred CCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCChhhHhhcC-CCCceeccCh
Q psy7164 1343 GGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLK-PGDKIIKPEW 1421 (2307)
Q Consensus 1343 ~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~K~~~~k-~~~kIVkpeW 1421 (2307)
+.+|+|++|+++|+.. ..+.+|.++|..+||++...++++||||||......|..... .+.+||+|+|
T Consensus 103 ~~~l~g~~~~~tG~~~-----------~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~~t~Ky~~A~~~gi~IV~~~W 171 (298)
T 3olc_X 103 NMVMSDVTISCTSLEK-----------EKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPILLPSW 171 (298)
T ss_dssp CCTTTTCEEEEESCCH-----------HHHHHHHHHHHHTTCEECSSCCTTCCEEEESSSCSHHHHHHHHTTCCEECHHH
T ss_pred ccccCCeEEEeCCCcH-----------HhHHHHHHHHHHCCCEEecCcCCCeeEEEEeCCCChHHHHHHHCCCeEeeHHH
Confidence 5689999999999975 467899999999999999999999999999987666665543 3899999999
Q ss_pred HHHHHHhCCCCCCcCc
Q psy7164 1422 IVDSISAGKLLDHKKY 1437 (2307)
Q Consensus 1422 I~DSI~~gklLp~~~Y 1437 (2307)
|.+|++.|+.++..+|
T Consensus 172 l~~c~~~~~~~~~~~~ 187 (298)
T 3olc_X 172 IKTLWEKSQEKKITRY 187 (298)
T ss_dssp HHHHHHHHHTTCCSSG
T ss_pred HHHHHHcCCcCCcccc
Confidence 9999999998876555
No 78
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=98.25 E-value=5.9e-07 Score=94.69 Aligned_cols=89 Identities=20% Similarity=0.193 Sum_probs=69.5
Q ss_pred CCCCCccceEEEEeeeeccccccccccCCCCH-HHHHHHHHHcCCEEEEeccCCccEEEeCCCChhhHh--------hcC
Q psy7164 1341 SRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSA-EELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIK--------KLK 1411 (2307)
Q Consensus 1341 ~~~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~-~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~K~~--------~~k 1411 (2307)
.....|.||+|||=..-- + .++ +-|.+++.++||++..-+++.|||||+.+.+.+.+. .+.
T Consensus 6 ~~~~~F~~v~iyive~km---G-------~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~~s~~~~~~~L~~~~~~l~ 75 (133)
T 2dun_A 6 SGSTRFPGVAIYLVEPRM---G-------RSRRAFLTGLARSKGFRVLDACSSEATHVVMEETSAEEAVSWQERRMAAAP 75 (133)
T ss_dssp CSSCSEEEEEEEECHHHH---C-------SHHHHHHHHHHHHHTEEECSSCCTTCCEEEESSCCHHHHHHHHHHHHHHSC
T ss_pred CCccccCccEEEEecCCc---C-------HHHHHHHHHHHHhcCCEeccccCCCceEEEecCCCHHHHHHHHHHhhcccC
Confidence 345799999999955531 1 334 569999999999999999999999999886654333 222
Q ss_pred ---CCCceeccChHHHHHHhCCCCCCcCcee
Q psy7164 1412 ---PGDKIIKPEWIVDSISAGKLLDHKKYLL 1439 (2307)
Q Consensus 1412 ---~~~kIVkpeWI~DSI~~gklLp~~~Y~l 1439 (2307)
.+..+|+..|+.||+++|+++|+..|-+
T Consensus 76 ~~~~~~~lLdisWltecm~~g~pV~~e~~~~ 106 (133)
T 2dun_A 76 PGCTPPALLDISWLTESLGAGQPVPVECRHR 106 (133)
T ss_dssp TTCCCCEEEEHHHHHHHHHHTSCCCCCTTTS
T ss_pred cCCCCcEEeccHHHHHHHhcCCcCCcccceE
Confidence 3678999999999999999999955533
No 79
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=98.23 E-value=7.2e-07 Score=102.15 Aligned_cols=85 Identities=16% Similarity=0.284 Sum_probs=64.0
Q ss_pred CCCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCC-hhhHhh-cCCCCceecc
Q psy7164 1342 RGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLP-HTKIKK-LKPGDKIIKP 1419 (2307)
Q Consensus 1342 ~~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~-~~K~~~-~k~~~kIVkp 1419 (2307)
+++..++++|.++|+.+ .+++++|..+||.+...+. .+||+||.... ..|... +..|..||+|
T Consensus 6 ~~~~~~~~~v~~sG~~~--------------~~~~~~i~~lGg~~~~~~~-~~THlI~~~~~rt~K~l~a~~~g~~IV~~ 70 (209)
T 2etx_A 6 LNQESTAPKVLFTGVVD--------------ARGERAVLALGGSLAGSAA-EASHLVTDRIRRTVKFLCALGRGIPILSL 70 (209)
T ss_dssp ------CCEEEECSSCC--------------HHHHHHHHHTTCEECSSTT-TCSEEECSSCCCSHHHHHHHHHTCCEECT
T ss_pred ccccCCCcEEEEeCCCc--------------HHHHHHHHHCCCEEeCCCC-CceEEEECCCCCCHHHHHHHhcCCccccH
Confidence 45678899999999974 2568999999999988876 49999998642 233222 2238899999
Q ss_pred ChHHHHHHhCCCCCCcCceeee
Q psy7164 1420 EWIVDSISAGKLLDHKKYLLYT 1441 (2307)
Q Consensus 1420 eWI~DSI~~gklLp~~~Y~l~~ 1441 (2307)
+||.||+++|+++|+++|.+.+
T Consensus 71 ~Wl~~~~~~~~~l~e~~y~~~~ 92 (209)
T 2etx_A 71 DWLHQSRKAGFFLPPDEYVVTD 92 (209)
T ss_dssp HHHHHHHHHTSCCCSGGGBCCC
T ss_pred HHHHHHHHcCCCCChhhccccC
Confidence 9999999999999999998853
No 80
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=98.19 E-value=1e-06 Score=100.24 Aligned_cols=83 Identities=11% Similarity=0.189 Sum_probs=65.1
Q ss_pred eEEEEeeeeccccccccccCCCCHHHHHHHHHHcCC-EEEEeccCCccEEEeCCC--ChhhHhhcCCCCceeccChHHHH
Q psy7164 1349 VAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGG-IYHHYESSRTTHIIASNL--PHTKIKKLKPGDKIIKPEWIVDS 1425 (2307)
Q Consensus 1349 ~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG-~~~~~l~~~vTHIIas~l--~~~K~~~~k~~~kIVkpeWI~DS 1425 (2307)
-+|.++|... ....+|.+++..+|| .+...++..|||||+... +.+-..-+.+|..||+|+||.||
T Consensus 12 ~~~~~sgl~~-----------~~~~~l~~~i~~lgG~~~~~~~~~~~THlv~~~~~rT~K~l~ai~~g~~Iv~~~Wv~~~ 80 (199)
T 3u3z_A 12 RTLVMTSMPS-----------EKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVLWS 80 (199)
T ss_dssp CEEEEESCCH-----------HHHHHHHHHHHHHCSCEEESSCCTTEEEEEESSCCCBHHHHHHHHTTCEEEETHHHHHH
T ss_pred eEEEEcCCCH-----------HHHHHHHHHHHHcCCcEEecCCCCCCeEEEECCCCCCHHHHHHHHCCCcEEeHHHHHHH
Confidence 4566688865 456779999999988 677888889999999873 22222223348899999999999
Q ss_pred HHhCCCCCCcCceeeec
Q psy7164 1426 ISAGKLLDHKKYLLYTG 1442 (2307)
Q Consensus 1426 I~~gklLp~~~Y~l~~~ 1442 (2307)
+++|+++||++|.+.+.
T Consensus 81 ~~~g~~l~e~~y~~~~~ 97 (199)
T 3u3z_A 81 LELGHWISEEPFELSHH 97 (199)
T ss_dssp HHHTSCCCSGGGBCTTT
T ss_pred hhCCCCCChhhccccCC
Confidence 99999999999988654
No 81
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=98.13 E-value=1.5e-06 Score=99.28 Aligned_cols=84 Identities=17% Similarity=0.209 Sum_probs=61.5
Q ss_pred CCCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEecc-----------------------CCccEEE
Q psy7164 1342 RGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYES-----------------------SRTTHII 1398 (2307)
Q Consensus 1342 ~~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~-----------------------~~vTHII 1398 (2307)
.+.+|.|+.||+.|-.. .+++.+|.++|..+||++..... ..+||.|
T Consensus 101 ~~~lF~g~~~~l~~~~~----------~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~i 170 (210)
T 2nte_A 101 LPKLFDGCYFYLWGTFK----------HHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYI 170 (210)
T ss_dssp CCCTTTTCEEEECSCCS----------SSCHHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEE
T ss_pred cccccCceEEEEeccCC----------CCCHHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEE
Confidence 35799999999987432 27899999999999999985210 2357887
Q ss_pred eCCCChhhH--hhcC-CCCceeccChHHHHHHhCCCCCCcC
Q psy7164 1399 ASNLPHTKI--KKLK-PGDKIIKPEWIVDSISAGKLLDHKK 1436 (2307)
Q Consensus 1399 as~l~~~K~--~~~k-~~~kIVkpeWI~DSI~~gklLp~~~ 1436 (2307)
...- ..|. ..++ .+.++|+|+||+|||.++++||+++
T Consensus 171 v~~~-~~~~~~~~~~~~~v~~V~~~Wl~dcI~~~~llp~~~ 210 (210)
T 2nte_A 171 IYED-LCNYHPERVRQGKVWKAPSSWFIDCVMSFELLPLDS 210 (210)
T ss_dssp EECS-CSSCCCSCSEETTEEEEEHHHHHHHHHHTSCCCSCC
T ss_pred Eecc-ccccCHHHHhccCcccccHHHHHHHHHhCeeccCCC
Confidence 7552 2221 1111 2468999999999999999999863
No 82
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=98.03 E-value=2.9e-06 Score=97.09 Aligned_cols=87 Identities=14% Similarity=0.327 Sum_probs=68.1
Q ss_pred CCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCC--ccEEEeCCCC-hhhHh-hcCCCCceecc
Q psy7164 1344 GIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSR--TTHIIASNLP-HTKIK-KLKPGDKIIKP 1419 (2307)
Q Consensus 1344 ~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~--vTHIIas~l~-~~K~~-~~k~~~kIVkp 1419 (2307)
.+|+|+.||+.+... |+..+|.++|..+||++...+... -+|||.+.-. ..+.. ..+.+.+||++
T Consensus 114 ~lF~g~~~~~~~~~~-----------~~~~~l~~li~~~GG~v~~~~~~~~~~~~ivI~~~~d~~~~~~~~~~~i~vvs~ 182 (209)
T 2etx_A 114 RLLEGYEIYVTPGVQ-----------PPPPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQDFPHCSIPLRVGLPLLSP 182 (209)
T ss_dssp CTTTTCEEEECTTCS-----------SCHHHHHHHHHHTTCEECSSCCCSCCTTEEEECCGGGGGGCHHHHHHTCCEECT
T ss_pred CCcCCcEEEEeCCCC-----------CCHHHHHHHHHHCCCEEECCCCCCCCCceEEEECcccHHHHHHHHHCCCeEEcH
Confidence 799999999998875 889999999999999999888653 2676664322 22221 12237899999
Q ss_pred ChHHHHHHhCCCCCCcCceeeec
Q psy7164 1420 EWIVDSISAGKLLDHKKYLLYTG 1442 (2307)
Q Consensus 1420 eWI~DSI~~gklLp~~~Y~l~~~ 1442 (2307)
+||+|||..+++ ++++|+|...
T Consensus 183 eWi~~sI~~q~l-d~e~y~l~~~ 204 (209)
T 2etx_A 183 EFLLTGVLKQEA-KPEAFVLSPL 204 (209)
T ss_dssp HHHHHHHHHTCC-CGGGGBCCTT
T ss_pred HHHHHHHHhccc-ChHHheecCC
Confidence 999999999886 9999988754
No 83
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=97.90 E-value=2e-05 Score=91.09 Aligned_cols=169 Identities=15% Similarity=0.121 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhhhhccc-------------CCCCCeEEEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeeccc
Q psy7164 85 YKIFDEILVNACDNKQR-------------DPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTS 151 (2307)
Q Consensus 85 ~~i~~EILdNavDe~~r-------------~g~~~~I~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag 151 (2307)
...+.|+|.||+|.... .+..-.|.|.++.+...|+|.|||.||+-+.... .|+.+.++
T Consensus 28 ~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~~~i~I~DnG~GMs~edl~~--------~l~~ia~S 99 (220)
T 2wer_A 28 EIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELIN--------NLGTIAKS 99 (220)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSCCCCHHHHHH--------HTTTSCCT
T ss_pred hHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCCCEEEEEEcCCCCCHHHHHH--------HHHhHhcc
Confidence 36899999999998531 0112246666666567999999999999764211 11111112
Q ss_pred ccCCCcccccccccccccccccccccCCCCCccccccCCCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCC
Q psy7164 152 SNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTS 231 (2307)
Q Consensus 152 ~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~ 231 (2307)
++ + .++ .+.....-....|..|+|...+-+++..++|.+... +...|......+-. ...
T Consensus 100 ~~------~--~f~-----------~k~~~~~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~-~~~~~~~~~~~~~~-~~i 158 (220)
T 2wer_A 100 GT------K--AFM-----------EALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSN-DDEQYIWESNAGGS-FTV 158 (220)
T ss_dssp TH------H--HHH-----------HHHTTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECT-TSCCEEEEECSSSE-EEE
T ss_pred cc------h--hHH-----------HHhhccCCcccCCccchhHHHhhhcCCeeEEEEecC-CCceeEEEeCCCCc-eEe
Confidence 00 0 000 011111224578999999999989999999988642 22334444333211 110
Q ss_pred cccc-CCCCCCCcEEEEEeCcccccccccCHHHHHHHHHHHHHhh-ccCCCcEEEecccc
Q psy7164 232 PEIK-SGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA-ASTKDVKVFLNGEK 289 (2307)
Q Consensus 232 ~~i~-~~~~~~GT~VtF~PD~~iF~~~~f~~d~l~~l~~Rl~dlA-~LnpGLkI~lnder 289 (2307)
.... .....+||+|+.....+. ..-++...+. .-+...| |+ ..-|++++++
T Consensus 159 ~~~~~~~~~~~GT~I~l~Lk~~~--~~~~e~~~i~---~~v~~~a~~l--~~PI~~~~~~ 211 (220)
T 2wer_A 159 TLDEVNERIGRGTILRLFLKDDQ--LEYLEEKRIK---EVIKRHSEFV--AYPIQLVVTK 211 (220)
T ss_dssp EECSSSCCCSSEEEEEEEECTTC--GGGGCHHHHH---HHHHHHCTTC--CSCEEECCCC
T ss_pred ecccCCCCCCCCeEEEEEECcch--HHhCCHHHHH---HHHHHHHhcC--CCceEEEecc
Confidence 0011 113468999998632211 0113444443 3333344 33 3456776664
No 84
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=97.82 E-value=1.3e-05 Score=83.42 Aligned_cols=83 Identities=14% Similarity=0.201 Sum_probs=70.0
Q ss_pred CCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCC---ChhhHhhcCC-CCceec
Q psy7164 1343 GGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNL---PHTKIKKLKP-GDKIIK 1418 (2307)
Q Consensus 1343 ~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l---~~~K~~~~k~-~~kIVk 1418 (2307)
...|.|.+|.|.|... -++++++++|..|||++..-++.+|+|||++.- ..+|..+.+. +++||+
T Consensus 8 ~~~l~G~~~ViTG~l~-----------~~R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~~gsKl~kA~~lgI~Ivs 76 (113)
T 2cok_A 8 DKPLSNMKILTLGKLS-----------RNKDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMNKKMEEVKEANIRVVS 76 (113)
T ss_dssp CCSSSSCEEEECSCCS-----------SCHHHHHHHHHHTTCEEESCSTTCSEEECCHHHHHHCCHHHHHHHHTTCCEEC
T ss_pred CCCcCCCEEEEEecCC-----------CCHHHHHHHHHHCCCEEcCccccCccEEEECCCCCCCChHHHHHHHCCCcEEe
Confidence 4679999999999875 489999999999999999999999999999832 3455555443 899999
Q ss_pred cCh----------HHHHHHhCCCCCCcC
Q psy7164 1419 PEW----------IVDSISAGKLLDHKK 1436 (2307)
Q Consensus 1419 peW----------I~DSI~~gklLp~~~ 1436 (2307)
.+| +.+||+...++||..
T Consensus 77 E~~l~~~~~~~~~~~~~i~k~~i~~w~~ 104 (113)
T 2cok_A 77 EDFLQDVSASTKSLQELFLAHILSSWGA 104 (113)
T ss_dssp THHHHHHHSCCSCHHHHHHHTBCSSCCC
T ss_pred HHHHHHHHhhchhHHHHHHHhcCCCCCC
Confidence 999 778888888888876
No 85
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=97.80 E-value=4.5e-06 Score=105.57 Aligned_cols=33 Identities=33% Similarity=0.563 Sum_probs=30.2
Q ss_pred CCCcCCCcchHHHhhhcccchhhhcccchhhhh
Q psy7164 1188 STKNASNEDFLGEFYNKSRLHHLSTMGSMFKQY 1220 (2307)
Q Consensus 1188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1220 (2307)
+..++.||+||++||+||||||||||++.+++.
T Consensus 2 ~~~~~~~~~f~~~~~~~srlh~~~~w~~~~~~~ 34 (434)
T 2aq4_A 2 RIVACDDPDFLTSYFAHSRLHHLSAWKANLKDK 34 (434)
T ss_dssp CCCCTTSTTHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CcccCCCccHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999874
No 86
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=97.78 E-value=1.4e-05 Score=80.22 Aligned_cols=74 Identities=22% Similarity=0.347 Sum_probs=66.4
Q ss_pred CCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCChhhHhhcCC-CCceeccCh
Q psy7164 1343 GGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKP-GDKIIKPEW 1421 (2307)
Q Consensus 1343 ~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~K~~~~k~-~~kIVkpeW 1421 (2307)
.+.|.|.+|.|.|... .++.+++.+|..+||++...++.+++|+|+..-..+|..+.+. +++||+.+|
T Consensus 5 ~~~l~G~~~v~TG~l~-----------~~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~~lgI~Ii~E~~ 73 (92)
T 1l7b_A 5 GEALKGLTFVITGELS-----------RPREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEE 73 (92)
T ss_dssp CCSSTTCEEECSTTTT-----------SCHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHHCSSSCCEEHHH
T ss_pred CCCcCCcEEEEecCCC-----------CCHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHHHHcCCcEEeHHH
Confidence 4679999999999985 4899999999999999999999999999999877777776654 899999999
Q ss_pred HHHHHH
Q psy7164 1422 IVDSIS 1427 (2307)
Q Consensus 1422 I~DSI~ 1427 (2307)
.++++.
T Consensus 74 f~~~l~ 79 (92)
T 1l7b_A 74 LYRLLE 79 (92)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999986
No 87
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=97.72 E-value=1e-05 Score=93.43 Aligned_cols=81 Identities=22% Similarity=0.329 Sum_probs=63.2
Q ss_pred ccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCC-hhhH-hhcCCCCceeccChHH
Q psy7164 1346 FQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLP-HTKI-KKLKPGDKIIKPEWIV 1423 (2307)
Q Consensus 1346 F~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~-~~K~-~~~k~~~kIVkpeWI~ 1423 (2307)
=+++.|.++|+.. . +..+++.++||.+..... +|||+|+.... ..|. .-+..|..||+|+||.
T Consensus 6 ~~~~~v~fSG~~~------------~--~~~~~i~~lGg~v~~~~~-~~THlV~~~~~RT~K~l~Aia~g~~IVs~~Wl~ 70 (220)
T 3l41_A 6 SKRVYITFTGYDK------------K--PSIDNLKKLDMSITSNPS-KCTHLIAPRILRTSKFLCSIPYGPCVVTMDWIN 70 (220)
T ss_dssp -CCEEEEECSCSS------------C--CCCGGGGGGTEEECSCTT-TCSEEECSSCCCBHHHHHHGGGCCEEECHHHHH
T ss_pred cceEEEEEeccCC------------C--CCcchHhhcceeeccCch-hhhhhhhhhHhhhcceeecCCCCCeEEEhHHHH
Confidence 3578899999985 1 237788889999887764 59999998742 2232 2233489999999999
Q ss_pred HHHHhCCCCCCcCceeee
Q psy7164 1424 DSISAGKLLDHKKYLLYT 1441 (2307)
Q Consensus 1424 DSI~~gklLp~~~Y~l~~ 1441 (2307)
||+++|+.+++.+|.+.+
T Consensus 71 ~~~~~~~~l~e~~y~l~d 88 (220)
T 3l41_A 71 SCLKTHEIVDEEPYLLND 88 (220)
T ss_dssp HHHHHTSCCCSGGGBCCC
T ss_pred hhhhhhhccccCccccCC
Confidence 999999999999999865
No 88
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=97.69 E-value=3.9e-05 Score=89.53 Aligned_cols=129 Identities=19% Similarity=0.237 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhhhhccc-------------CCCCCeEEEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeeccc
Q psy7164 85 YKIFDEILVNACDNKQR-------------DPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTS 151 (2307)
Q Consensus 85 ~~i~~EILdNavDe~~r-------------~g~~~~I~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag 151 (2307)
...+.|+|.||+|.... ......|.|.++.++..|+|.|||.||+-+.... .|+...++
T Consensus 49 ~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~~~i~I~DnG~GMs~edl~~--------~~~~ia~S 120 (235)
T 2ior_A 49 EIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVID--------HLGTIAKS 120 (235)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTTEEEEEECSSCCCHHHHHH--------HHTTCCCT
T ss_pred HHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCceEEEEEECCCCCCHHHHHH--------HHHHHccc
Confidence 35899999999998520 0122457787777667999999999998764311 12222222
Q ss_pred ccCCCcccccccccccccccccccccCCCC------CccccccCCCcccccccccccceeEEEEEeecc--cEEEEEEee
Q psy7164 152 SNYNDEEDKVTGVVPTMIFGHLLTSSNYND------EEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEY--KKSFKQVWK 223 (2307)
Q Consensus 152 ~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~------~~yk~sgGlhGVGasvvNAlS~~f~Vev~~~~~--gk~y~q~f~ 223 (2307)
++ ..|.+ ..-....|..|+|...+-+++..++|.+..... ...|...+.
T Consensus 121 ~~-----------------------~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~ 177 (235)
T 2ior_A 121 GT-----------------------KSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESA 177 (235)
T ss_dssp TH-----------------------HHHHHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEEC
T ss_pred cc-----------------------cchhhhhccccccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEec
Confidence 00 01100 011345699999998888899999998864322 334554443
Q ss_pred cCCCcCCCccccC-CCCCCCcEEEEE
Q psy7164 224 DNMSKVTSPEIKS-GSKDDFTKITFT 248 (2307)
Q Consensus 224 ~g~~~~~~~~i~~-~~~~~GT~VtF~ 248 (2307)
.+-. ..+.. .....||+|+..
T Consensus 178 ~~~~----~~i~~~~~~~~GT~V~v~ 199 (235)
T 2ior_A 178 GEGE----YTVADITKEDRGTEITLH 199 (235)
T ss_dssp SSSE----EEEEEECCCSCEEEEEEE
T ss_pred CCCc----EEEeeCCCCCCCEEEEEE
Confidence 3211 11111 234689999864
No 89
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=97.68 E-value=3.3e-05 Score=89.69 Aligned_cols=131 Identities=18% Similarity=0.193 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhhhhccc-------C------CCCCeEEEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeeccc
Q psy7164 85 YKIFDEILVNACDNKQR-------D------PKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTS 151 (2307)
Q Consensus 85 ~~i~~EILdNavDe~~r-------~------g~~~~I~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag 151 (2307)
...+.|+|.||+|.... + +..-.|.|.++.....|+|.|||.||+-+.... .|++..++
T Consensus 34 ~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~DnG~GMs~edl~~--------~l~~ia~S 105 (228)
T 3t0h_A 34 EIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLIN--------NLGTIAKS 105 (228)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHT--------GGGSCHHH
T ss_pred HHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEeCCCCCCHHHHHH--------HHHhhccc
Confidence 35899999999998531 1 112256666666567999999999999764321 11222222
Q ss_pred ccCCCcccccccccccccccccccccCCCC----CccccccCCCcccccccccccceeEEEEEeecccEEEEEEeecCCC
Q psy7164 152 SNYNDEEDKVTGVVPTMIFGHLLTSSNYND----EEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMS 227 (2307)
Q Consensus 152 ~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~----~~yk~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~ 227 (2307)
.+ ..|.+ ..-..+.|..|+|...+-++|+.++|.+... +...|......|-.
T Consensus 106 --------------------~~---~~f~~~l~~~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~-~~~~~~w~~~g~~~ 161 (228)
T 3t0h_A 106 --------------------GT---KAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHN-DDEQYAWESSAGGS 161 (228)
T ss_dssp --------------------HH---HHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECT-TSCEEEEEECSTTE
T ss_pred --------------------cc---hhhhhhhcccCCcccCCCCChhHHHHhccCCEEEEEEecC-CCCcEEEEEcCCce
Confidence 00 00100 1124688999999999999999999998743 34556655554421
Q ss_pred cCCCccccCCCCCCCcEEEEE
Q psy7164 228 KVTSPEIKSGSKDDFTKITFT 248 (2307)
Q Consensus 228 ~~~~~~i~~~~~~~GT~VtF~ 248 (2307)
.............||+|+..
T Consensus 162 -~~v~~~~~~~~~~GT~I~v~ 181 (228)
T 3t0h_A 162 -FTVRTDTGEPMGRGTKVILH 181 (228)
T ss_dssp -EEEEECCSSCCSSEEEEEEE
T ss_pred -EEEeecCCCCCCCCcEEEEE
Confidence 11111111234689999887
No 90
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=97.62 E-value=7.8e-05 Score=87.63 Aligned_cols=131 Identities=17% Similarity=0.183 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhhhhccc-------------CCCCCeEEEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeeccc
Q psy7164 85 YKIFDEILVNACDNKQR-------------DPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTS 151 (2307)
Q Consensus 85 ~~i~~EILdNavDe~~r-------------~g~~~~I~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag 151 (2307)
...+.|+|.||+|.... .+..-.|.|.++.+...|+|.|||.||.-+.... .|++.-++
T Consensus 62 ~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnG~GMt~edl~~--------~l~~ia~S 133 (256)
T 3o0i_A 62 EIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLIN--------NLGTIAKS 133 (256)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHT--------HHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCceEEEEecCCCCcCHHHHHH--------HHHhhccc
Confidence 35799999999998531 1122356666676667999999999999764321 12222222
Q ss_pred ccCCCcccccccccccccccccccccCCCC----CccccccCCCcccccccccccceeEEEEEeecccEEEEEEeecCCC
Q psy7164 152 SNYNDEEDKVTGVVPTMIFGHLLTSSNYND----EEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMS 227 (2307)
Q Consensus 152 ~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~----~~yk~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~ 227 (2307)
.+ ..|.+ ..-..+.|..|+|...+-++|+.++|.+... +...|......|-.
T Consensus 134 --------------------~~---~~f~~~L~~~~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~-~~~g~~w~s~gg~~ 189 (256)
T 3o0i_A 134 --------------------GT---KAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHN-DDEQYAWESSAGGS 189 (256)
T ss_dssp --------------------HH---HHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECT-TSCEEEEEECSTTE
T ss_pred --------------------cc---cchhhhhcccCCccccCCCcchHHHhhccCCeEEEEEcCC-CCceEEEEEeccce
Confidence 00 00100 1124688999999999999999999998743 34456555444421
Q ss_pred cCCCccccCCCCCCCcEEEEE
Q psy7164 228 KVTSPEIKSGSKDDFTKITFT 248 (2307)
Q Consensus 228 ~~~~~~i~~~~~~~GT~VtF~ 248 (2307)
.............||+|+..
T Consensus 190 -~~v~~~~~~~~~~GT~I~l~ 209 (256)
T 3o0i_A 190 -FTVRTDTGEPMGRGTKVILH 209 (256)
T ss_dssp -EEEEECCSSCCSSEEEEEEE
T ss_pred -EEEeeCCCCCCCCCcEEEEE
Confidence 11111112234689999987
No 91
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=97.58 E-value=0.00011 Score=85.81 Aligned_cols=135 Identities=17% Similarity=0.184 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhhhhccc-------------CCCCCeEEEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeeccc
Q psy7164 85 YKIFDEILVNACDNKQR-------------DPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTS 151 (2307)
Q Consensus 85 ~~i~~EILdNavDe~~r-------------~g~~~~I~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag 151 (2307)
...+.|+|.||+|.... .+....|.|.++.+...|+|.|||.||+-+.... .|++.-++
T Consensus 34 ~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~i~I~DnG~GMt~edl~~--------~l~~ia~S 105 (236)
T 2gqp_A 34 EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVK--------NLGTIAKS 105 (236)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH--------HHHCC---
T ss_pred hHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCCCEEEEEECCcCCCHHHHHH--------HHhhhccc
Confidence 36899999999998520 1122467777777667999999999999764211 12222222
Q ss_pred ccCCCcccccccccccccccccccccCCCCC-----ccccccCCCcccccccccccceeEEEEEeecccEEEEEEeecCC
Q psy7164 152 SNYNDEEDKVTGVVPTMIFGHLLTSSNYNDE-----EDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNM 226 (2307)
Q Consensus 152 ~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~-----~yk~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~ 226 (2307)
++- .+. .+.... .-....|..|+|...+=.++..++|.+... +...|.... +|
T Consensus 106 g~~--------~f~-----------~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va~~v~V~Sr~~-~~~~~~w~~-~g- 163 (236)
T 2gqp_A 106 GTS--------EFL-----------NKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHN-NDTQHIWES-DS- 163 (236)
T ss_dssp -------------------------------------CHHHHHHTTCGGGGGGGTEEEEEEEEECT-TSCCEEEEE-SS-
T ss_pred ccH--------hHH-----------HHhhccccccccchhhcCCCCcchhhHhhcCCEEEEEEeCC-CCceEEEEE-eC-
Confidence 000 000 011110 223567999999999999999999988642 223343332 22
Q ss_pred CcCCCcccc-CCCCCCCcEEEEEe
Q psy7164 227 SKVTSPEIK-SGSKDDFTKITFTP 249 (2307)
Q Consensus 227 ~~~~~~~i~-~~~~~~GT~VtF~P 249 (2307)
......... .....+||+|+...
T Consensus 164 g~~~i~~~~~~~~~~~GT~I~l~L 187 (236)
T 2gqp_A 164 NEFSVIADPRGNTLGRGTTITLVL 187 (236)
T ss_dssp SCEEEEECTTCSCSSSEEEEEEEE
T ss_pred CEEEEEeccCCCCCCCCeEEEEEE
Confidence 211111111 11246899999863
No 92
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=97.55 E-value=7e-05 Score=88.55 Aligned_cols=85 Identities=15% Similarity=0.278 Sum_probs=59.0
Q ss_pred CCCCccceEEEEeeeeccccccccccCCC-CHHHHHHHHHHcCCEEEEeccC---------CccE-EEeCCC-ChhhHhh
Q psy7164 1342 RGGIFQGVAIFVNGYTKHCMMLDAYYIVP-SAEELKALMMLHGGIYHHYESS---------RTTH-IIASNL-PHTKIKK 1409 (2307)
Q Consensus 1342 ~~~IF~G~~iyVnGyt~~~~~~~~~~~~p-s~~eL~~li~~hGG~~~~~l~~---------~vTH-IIas~l-~~~K~~~ 1409 (2307)
+..+|+|+.|||.+... + ....+..++..+||.+...+.+ ..+| ||++.- +..+...
T Consensus 152 ~~~LF~G~~I~i~~~~~-----------~~~~~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv~d~~~~~~~~~~ 220 (259)
T 1kzy_C 152 RENPFQNLKVLLVSDQQ-----------QNFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSCPASVLKC 220 (259)
T ss_dssp CCCTTTTCEEEEEESCT-----------TTTHHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECTTCCHHHHHH
T ss_pred cCCCCCCeEEEEecCCC-----------CCHHHHHHHHHHhcCCEEEeccccchhhhhccCCCCeEEEECCCChHHHHHH
Confidence 35899999999988753 4 3455666777799998877642 3344 455432 2222211
Q ss_pred cC-CCCceeccChHHHHHHhCCCCCCcCc
Q psy7164 1410 LK-PGDKIIKPEWIVDSISAGKLLDHKKY 1437 (2307)
Q Consensus 1410 ~k-~~~kIVkpeWI~DSI~~gklLp~~~Y 1437 (2307)
.. .+.+||+.+||+|||..|++||+..+
T Consensus 221 a~~~~i~iVs~EWv~~sI~~~~ll~~~~h 249 (259)
T 1kzy_C 221 AEALQLPVVSQEWVIQCLIVGERIGFKQH 249 (259)
T ss_dssp HHHHTCCEECHHHHHHHHHHTSCCCTTSS
T ss_pred HHhcCCCEecHHHHHHHHHhCCcCCCCcC
Confidence 11 27999999999999999999997654
No 93
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=97.53 E-value=0.00011 Score=75.98 Aligned_cols=77 Identities=21% Similarity=0.273 Sum_probs=66.3
Q ss_pred CCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCCh-hhHhhcCC-CCceeccC
Q psy7164 1343 GGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPH-TKIKKLKP-GDKIIKPE 1420 (2307)
Q Consensus 1343 ~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~-~K~~~~k~-~~kIVkpe 1420 (2307)
++.|.|.+|.|.|... .-++.+++.+|..+||++...++.+|+|||+..-+. +|..+.+. |++||+.+
T Consensus 30 ~~~l~G~~~v~TG~l~----------~~~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~sK~~kA~~lgI~Ii~E~ 99 (109)
T 2k6g_A 30 ENCLEGLIFVITGVLE----------SIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDED 99 (109)
T ss_dssp TTTTTTCEEEEESBCS----------SCCHHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCHHHHHHHHHHTCEEECHH
T ss_pred CCCCCCCEEEEeeeCC----------CCCHHHHHHHHHHcCCEeeCcccCCceEEEECCCCChHHHHHHHHcCCeEEeHH
Confidence 4579999999999984 147999999999999999999999999999998665 66655443 89999999
Q ss_pred hHHHHHHhC
Q psy7164 1421 WIVDSISAG 1429 (2307)
Q Consensus 1421 WI~DSI~~g 1429 (2307)
|++++|..+
T Consensus 100 ~f~~ll~~~ 108 (109)
T 2k6g_A 100 GLLNLIRNL 108 (109)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 999999765
No 94
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=97.51 E-value=8.8e-05 Score=85.68 Aligned_cols=85 Identities=16% Similarity=0.263 Sum_probs=65.6
Q ss_pred CCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccC-------------CccEEEeCCCChhhHh-
Q psy7164 1343 GGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESS-------------RTTHIIASNLPHTKIK- 1408 (2307)
Q Consensus 1343 ~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~-------------~vTHIIas~l~~~K~~- 1408 (2307)
+.+|+|+.|||.+... |+..+|+.+|..+||++...+.. ....||++.-+.....
T Consensus 120 ~~LF~G~~f~it~~~~-----------~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~~~~~~ivis~~~d~~~~~~ 188 (219)
T 3sqd_A 120 SPLFKAKYFYITPGIC-----------PSLSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEIILISCENDLHLCRE 188 (219)
T ss_dssp SCTTTTEEEEECTTCS-----------SCHHHHHHHHHHTTCEEESSCCCHHHHHHHHHCTTSCEEEEEECGGGGGGGHH
T ss_pred ccccCCcEEEEeCCCC-----------CCHHHHHHHHHHCCCEEECCCCchHHhhhhhcccCCCCEEEEecccHHHHHHH
Confidence 4799999999988765 88999999999999999987643 1245666653433333
Q ss_pred hcCCCCceeccChHHHHHHhCCCCCCcCcee
Q psy7164 1409 KLKPGDKIIKPEWIVDSISAGKLLDHKKYLL 1439 (2307)
Q Consensus 1409 ~~k~~~kIVkpeWI~DSI~~gklLp~~~Y~l 1439 (2307)
..+.|..|++++||++||-.+++ +++.|.|
T Consensus 189 ~~~~~~~v~s~E~il~~Il~q~l-d~~~~~~ 218 (219)
T 3sqd_A 189 YFARGIDVHNAEFVLTGVLTQTL-DYESYKF 218 (219)
T ss_dssp HHHTTCCCEETHHHHHHHHHTCC-CTTTSBC
T ss_pred HHHCCCcEEeHHHHHHHHHheee-cchhccc
Confidence 33458999999999999997776 8888865
No 95
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=97.50 E-value=0.00013 Score=86.35 Aligned_cols=167 Identities=17% Similarity=0.202 Sum_probs=88.7
Q ss_pred HHHHHHHHHhhhhccc-------CC----CCCeEEEE--EEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccc
Q psy7164 86 KIFDEILVNACDNKQR-------DP----KMNCIKIT--VNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSS 152 (2307)
Q Consensus 86 ~i~~EILdNavDe~~r-------~g----~~~~I~V~--i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~ 152 (2307)
..+.|+|.||+|.... +. ..+.|.|. .+.+...|+|.|||.||.-+.... .|+++-+++
T Consensus 71 ~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG~GMs~edL~~--------~l~~ia~S~ 142 (264)
T 1yc1_A 71 IFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLIN--------NLGTIAKSG 142 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH--------HHHSCTTSC
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECCcCCCHHHHHH--------HHHhhcccc
Confidence 5899999999998530 00 11344444 455556999999999998764211 122222220
Q ss_pred cCCCcccccccccccccccccccccCCCCCccccccCCCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCc
Q psy7164 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSP 232 (2307)
Q Consensus 153 k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~ 232 (2307)
+- .++ .++.........|..|+|...+-+++..++|.+... +...|......+-. ....
T Consensus 143 ~~--------~f~-----------~~l~~~~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~-~~~~~~w~~~~~~~-~~i~ 201 (264)
T 1yc1_A 143 TK--------AFM-----------EALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHN-DDEQYAWESSAGGS-FTVR 201 (264)
T ss_dssp HH--------HHH-----------HHHHTTCCGGGGGGGTCGGGGHHHHEEEEEEEEECT-TSCCEEEEECSTTE-EEEE
T ss_pred ch--------hhh-----------hhhccccchhhcCCCCCCccccccCCCEEEEEEecC-CCceEEEEEcCCce-EEEe
Confidence 00 000 000001123568899999999999999999988642 22334433333211 1111
Q ss_pred cccCCCCCCCcEEEEEe--CcccccccccCHHHHHHHHHHHHHhhccCCCcEEEecccc
Q psy7164 233 EIKSGSKDDFTKITFTP--DLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEK 289 (2307)
Q Consensus 233 ~i~~~~~~~GT~VtF~P--D~~iF~~~~f~~d~l~~l~~Rl~dlA~LnpGLkI~lnder 289 (2307)
........+||+|+... |..-| ++...+. .-+...|-.. ..-|++++++
T Consensus 202 ~~~~~~~~~GT~I~l~Lk~~~~e~----~e~~~i~---~lv~k~s~fi-~~PI~~~~~~ 252 (264)
T 1yc1_A 202 TDTGEPMGRGTKVILHLKEDQTEY----LEERRIK---EIVKKHSQFI-GYPITLFVEK 252 (264)
T ss_dssp ECCSSCCSSEEEEEEEECGGGGGG----GSHHHHH---HHHHHHTTTC-SSCEEECCCC
T ss_pred ecCCCCCCCCeEEEEEECCchhhh----hhHHHHH---HHHHHHHhhC-CCCEEEeecc
Confidence 11111346899999873 22111 3445443 3333444222 3567777765
No 96
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=97.43 E-value=0.0002 Score=85.04 Aligned_cols=137 Identities=20% Similarity=0.262 Sum_probs=78.4
Q ss_pred HHHHHHHHHhhhhccc-------------CCCCCeEEEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccc
Q psy7164 86 KIFDEILVNACDNKQR-------------DPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSS 152 (2307)
Q Consensus 86 ~i~~EILdNavDe~~r-------------~g~~~~I~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~ 152 (2307)
..+.|+|.||+|.... .+..-.|.|.++.+++.|+|.|||.||.-+.... .|+++-.++
T Consensus 49 ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~~tLtI~DNGiGMt~edL~~--------~LgtIa~Sg 120 (281)
T 3peh_A 49 VFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKVDLIN--------NLGTIAKSG 120 (281)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH--------HHHHHHHSC
T ss_pred HHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCCcEEEEEeCCCCCCHHHHHH--------HHHHHHhHh
Confidence 4789999999998521 1223467888887778999999999998753211 122222220
Q ss_pred cCCCcccccccccccccccccccccCCCCCccccccCCCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCc
Q psy7164 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSP 232 (2307)
Q Consensus 153 k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~ 232 (2307)
+ ..|+ .....++ .-....|+.|||...+=+++..++|.+... +...|......| ..-...
T Consensus 121 t--------k~f~------e~l~~~~----~d~~~IGqFGVGFySaf~vadkV~V~Sk~~-~~~~~~Wes~g~-g~fti~ 180 (281)
T 3peh_A 121 T--------SNFL------EAISKSG----GDMSLIGQFGVGFYSAFLVADKVIVYTKNN-DDEQYIWESTAD-AKFTIY 180 (281)
T ss_dssp H--------HHHH------HHHHHTT----CCSTTTTTTTCGGGGGGGTEEEEEEEEECT-TSCCEEEEEETT-SCEEEE
T ss_pred h--------hhHH------Hhhhccc----cccccccccCccchhhccccCEEEEEEecC-CCCEEEEEECCC-ccEEEE
Confidence 0 0000 0000001 113468999999999988999999988642 233444333332 111111
Q ss_pred ccc-CCCCCCCcEEEEEeC
Q psy7164 233 EIK-SGSKDDFTKITFTPD 250 (2307)
Q Consensus 233 ~i~-~~~~~~GT~VtF~PD 250 (2307)
... +....+||+|+....
T Consensus 181 ~~~~~~~~~~GT~I~L~Lk 199 (281)
T 3peh_A 181 KDPRGATLKRGTRISLHLK 199 (281)
T ss_dssp ECTTCSTTSSEEEEEEEEC
T ss_pred EcCCCCCCCCCeEEEEEEC
Confidence 111 113468999998643
No 97
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=97.40 E-value=0.00019 Score=83.63 Aligned_cols=136 Identities=18% Similarity=0.187 Sum_probs=78.7
Q ss_pred HHHHHHHHHhhhhccc-------------CCCCCeEEEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccc
Q psy7164 86 KIFDEILVNACDNKQR-------------DPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSS 152 (2307)
Q Consensus 86 ~i~~EILdNavDe~~r-------------~g~~~~I~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~ 152 (2307)
..+.|+|.||.|.... .+..-.|.|.++.+...|+|.|||.||.-+.... .|+++-.++
T Consensus 42 ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~edL~~--------~LgtIA~Sg 113 (239)
T 3nmq_A 42 IFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLIN--------NLGTIAKSG 113 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHT--------HHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCCccEEEEEeCCCCCCHHHHHH--------HHHHHhccc
Confidence 4789999999998531 1123367788887778999999999998764321 112221220
Q ss_pred cCCCcccccccccccccccccccccCCCCCccccccCCCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCc
Q psy7164 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSP 232 (2307)
Q Consensus 153 k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~ 232 (2307)
+ ..|+ . ++..+.-....|+.|||...+=.+++.++|.+... +...|..+...+ ..-+..
T Consensus 114 t--------k~f~------e-----~~~~~~d~~~IGqFGvGfySaf~vadkv~V~Sk~~-~~~~~~W~s~~~-g~fti~ 172 (239)
T 3nmq_A 114 T--------KAFM------E-----ALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHN-DDEQYAWESSAG-GSFTVR 172 (239)
T ss_dssp H--------HHHH------H-----HHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECT-TSCCEEEEECST-TEEEEE
T ss_pred c--------hhhh------h-----hhcccCCcccccccCcccccccccCCEEEEEEeeC-CCceeEEEECCC-CcEEEE
Confidence 0 0000 0 00011124578999999999999999999998642 334454332222 111111
Q ss_pred cccCCCCCCCcEEEEEeC
Q psy7164 233 EIKSGSKDDFTKITFTPD 250 (2307)
Q Consensus 233 ~i~~~~~~~GT~VtF~PD 250 (2307)
...+....+||+|+....
T Consensus 173 ~~~~~~~~~GT~I~L~lk 190 (239)
T 3nmq_A 173 ADHGEPIGRGTKVILHLK 190 (239)
T ss_dssp ECCSSCCSSEEEEEEEEC
T ss_pred ecCCCcCCCCCEEEEEEC
Confidence 111123468999997643
No 98
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=97.37 E-value=0.00052 Score=88.77 Aligned_cols=133 Identities=19% Similarity=0.234 Sum_probs=78.1
Q ss_pred HHHHHHHHHhhhhcc--c-----------CCCCCeEEEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccc
Q psy7164 86 KIFDEILVNACDNKQ--R-----------DPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSS 152 (2307)
Q Consensus 86 ~i~~EILdNavDe~~--r-----------~g~~~~I~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~ 152 (2307)
..+.|+|.||+|... | ......|.|.++.+++.|+|.|||.||.-+.... .|++.-+|+
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnGiGMt~edl~~--------~l~tiA~Sg 101 (559)
T 1y4s_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVID--------HLGTIAKSG 101 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTTEEEEEECSSCCCHHHHHH--------HHSCCSCCC
T ss_pred HHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCCcEEEEEECCCCCCHHHHHH--------HHhhhcccc
Confidence 579999999999861 0 1223478888888778999999999999764211 122222220
Q ss_pred cCCCcccccccccccccccccccccCCCC--CccccccCCCcccccccccccceeEEEEEeec--ccEEEEEEeecCCCc
Q psy7164 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYND--EEDKVTGGRNGYGAKLCNIFSSKFVVETSCSE--YKKSFKQVWKDNMSK 228 (2307)
Q Consensus 153 k~~~~~~~~~~~~~~~~~~~~~~g~nfd~--~~yk~sgGlhGVGasvvNAlS~~f~Vev~~~~--~gk~y~q~f~~g~~~ 228 (2307)
+- .|+ .++.+ ..-....|..|+|...+=+++..++|.+.... ....|......| ..
T Consensus 102 ~~--------~f~-----------e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~-~~ 161 (559)
T 1y4s_A 102 TK--------SFL-----------ESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGE-GE 161 (559)
T ss_dssp CC--------CTT-----------CC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSS-SE
T ss_pred cH--------HHH-----------HHhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCC-Ce
Confidence 00 000 00110 01235689999999888888999999886422 123454443332 11
Q ss_pred CCCccccCC-CCCCCcEEEEEe
Q psy7164 229 VTSPEIKSG-SKDDFTKITFTP 249 (2307)
Q Consensus 229 ~~~~~i~~~-~~~~GT~VtF~P 249 (2307)
- .+... ...+||+|+...
T Consensus 162 ~---~i~~~~~~~~GT~I~L~L 180 (559)
T 1y4s_A 162 Y---TVADITKEDRGTEITLHL 180 (559)
T ss_dssp E---EEEEECCCSCEEEEEEEE
T ss_pred e---EEeECCCCCCCeEEEEEE
Confidence 1 11111 346899998763
No 99
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.35 E-value=0.00016 Score=75.11 Aligned_cols=75 Identities=21% Similarity=0.307 Sum_probs=65.1
Q ss_pred CCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCCh-hhHhhcCC-CCceeccCh
Q psy7164 1344 GIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPH-TKIKKLKP-GDKIIKPEW 1421 (2307)
Q Consensus 1344 ~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~-~K~~~~k~-~~kIVkpeW 1421 (2307)
+.|.|.+|.|.|... .-++.+++.+|..+||++...++.+++|||+..-.. +|..+.+. +++||+.+|
T Consensus 21 ~~l~G~~~v~TG~l~----------~~~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~sKl~KA~~lgI~IisE~~ 90 (112)
T 2ebu_A 21 NCLEGLIFVITGVLE----------SIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDG 90 (112)
T ss_dssp SSSTTCEEEECSCCS----------SSCHHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCSHHHHHHHHHTCEEEEHHH
T ss_pred CCcCCCEEEEeeeCC----------CCCHHHHHHHHHHcCCEEeccccCCeeEEEecCCCChHHHHHHHHcCCeEEeHHH
Confidence 579999999999984 147999999999999999999999999999998665 66655443 899999999
Q ss_pred HHHHHHh
Q psy7164 1422 IVDSISA 1428 (2307)
Q Consensus 1422 I~DSI~~ 1428 (2307)
+++.|..
T Consensus 91 f~~ll~~ 97 (112)
T 2ebu_A 91 LLNLIRT 97 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999974
No 100
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.00015 Score=72.20 Aligned_cols=86 Identities=16% Similarity=0.262 Sum_probs=64.6
Q ss_pred CCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCc--cEEEeCCCChhhHhhcCCCCceeccC
Q psy7164 1343 GGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRT--THIIASNLPHTKIKKLKPGDKIIKPE 1420 (2307)
Q Consensus 1343 ~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~v--THIIas~l~~~K~~~~k~~~kIVkpe 1420 (2307)
..+|+|+.||+|--++.. --.-..++|+++|..|||++..-+..+. -+.|.|. .... +.+.|.|.
T Consensus 9 ~~vF~g~~Fyin~d~~a~------ds~~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSp-----yN~t--~LpTVtpT 75 (106)
T 2l42_A 9 GPPLSNMKFYLNRDADAH------DSLNDIDQLARLIRANGGEVLDSKPRESKENVFIVSP-----YNHT--NLPTVTPT 75 (106)
T ss_dssp SCSSCCCCBEECCSSSCS------SCSSTHHHHHHHHHTTTSCCCEECCCCCSSCCCCBCT-----TCCC--SSSBCCTT
T ss_pred CccccCcEEEEcCCCccc------hhhhHHHHHHHHHHhcCcEEhhhCcccccCCeEEEeC-----CCCC--CCccccHH
Confidence 468999999997655411 1113568999999999999999887443 3444443 2221 58899999
Q ss_pred hHHHHHHhCCCCCCcCceeee
Q psy7164 1421 WIVDSISAGKLLDHKKYLLYT 1441 (2307)
Q Consensus 1421 WI~DSI~~gklLp~~~Y~l~~ 1441 (2307)
+|-.||.++.||+..+|++-.
T Consensus 76 YI~aC~~~nTLLnv~~YLvp~ 96 (106)
T 2l42_A 76 YIKACCQSNSLLNMENYLVPY 96 (106)
T ss_dssp HHHHHHHSTTSCGGGGCCBCS
T ss_pred HHHHHHhcCceecccccccCc
Confidence 999999999999999998754
No 101
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00077 Score=88.59 Aligned_cols=134 Identities=16% Similarity=0.168 Sum_probs=77.7
Q ss_pred HHHHHHHHHhhhhcc--c-----C------CCCCeEEEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccc
Q psy7164 86 KIFDEILVNACDNKQ--R-----D------PKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSS 152 (2307)
Q Consensus 86 ~i~~EILdNavDe~~--r-----~------g~~~~I~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~ 152 (2307)
..+.|+|.||+|... | + .....|.|.++.++.+|+|.|||.||.-+.... .|++.-+||
T Consensus 29 ifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~~~I~I~DnGiGMt~edl~~--------~l~tIA~Sg 100 (677)
T 2cg9_A 29 IFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELIN--------NLGTIAKSG 100 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGTEEEEEECSCCCCHHHHHG--------GGSSSSSCT
T ss_pred HHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCCCEEEEEECCCCCCHHHHHH--------HHHhHhccc
Confidence 479999999999852 1 1 123468888888778999999999999764321 011111110
Q ss_pred cCCCcccccccccccccccccccccCCCCCccccccCCCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCc
Q psy7164 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSP 232 (2307)
Q Consensus 153 k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~ 232 (2307)
. ..|+ .++.+..-....|+.|||...+=+++..++|.+... +...|......| ..-+..
T Consensus 101 ------t--~~f~-----------~kl~~~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~-~~~~~~W~s~g~-~~~ti~ 159 (677)
T 2cg9_A 101 ------T--KAFM-----------EALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSN-DDEQYIWESNAG-GSFTVT 159 (677)
T ss_dssp ------T--HHHH-----------SCCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEECT-TSCEEEEEECSS-SEEEEE
T ss_pred ------c--HHHH-----------HhhhcccchhhcCCCCchhHHHhhcCcEEEEEEccC-CCceEEEEEcCC-ceEEEe
Confidence 0 0000 012111223568999999988888889999988642 223444332222 111111
Q ss_pred c-ccCCCCCCCcEEEEE
Q psy7164 233 E-IKSGSKDDFTKITFT 248 (2307)
Q Consensus 233 ~-i~~~~~~~GT~VtF~ 248 (2307)
. ..+....+||+|+..
T Consensus 160 ~~~~~~~~~~GT~I~L~ 176 (677)
T 2cg9_A 160 LDEVNERIGRGTILRLF 176 (677)
T ss_dssp ECCSSCCCSSEEEEEEE
T ss_pred ecCCCCCCCCCeEEEEE
Confidence 1 111234689999986
No 102
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=97.20 E-value=0.0002 Score=85.02 Aligned_cols=128 Identities=19% Similarity=0.233 Sum_probs=74.8
Q ss_pred HHHHHHHHHhhhhcc--c-----------CCCCCeEEEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccc
Q psy7164 86 KIFDEILVNACDNKQ--R-----------DPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSS 152 (2307)
Q Consensus 86 ~i~~EILdNavDe~~--r-----------~g~~~~I~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~ 152 (2307)
..+.|+|.||+|... | .+..-.|.|.++.+...|+|.|||.||+-+.... .|+++-.+
T Consensus 31 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~I~DnGiGMt~edl~~--------~l~tia~S- 101 (269)
T 1qy5_A 31 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVK--------NLGTIAKS- 101 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH--------HHHSCCSH-
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCceEEEEEECCCCCCHHHHHH--------Hhhhhccc-
Confidence 489999999999852 1 1222357777777667999999999999763211 12222111
Q ss_pred cCCCcccccccccccccccccccccC-C----CC-----CccccccCCCcccccccccccceeEEEEEeecccEEEEEEe
Q psy7164 153 NYNDEEDKVTGVVPTMIFGHLLTSSN-Y----ND-----EEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVW 222 (2307)
Q Consensus 153 k~~~~~~~~~~~~~~~~~~~~~~g~n-f----d~-----~~yk~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f 222 (2307)
|.+ | .. ..-....|+.|||...+-.++..++|.+... +...|....
T Consensus 102 -----------------------gtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~-~~~~~~w~s 157 (269)
T 1qy5_A 102 -----------------------GTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHN-NDTQHIWES 157 (269)
T ss_dssp -----------------------HHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECT-TSCCEEEEE
T ss_pred -----------------------ccHHHHHhhhhcccccccchhhcCCccccHHHHhhccceEEEEEEec-CCcEEEEEE
Confidence 111 1 00 0113456899999999999999999988642 223343322
Q ss_pred ecCCCcCCCcccc-CCCCCCCcEEEEE
Q psy7164 223 KDNMSKVTSPEIK-SGSKDDFTKITFT 248 (2307)
Q Consensus 223 ~~g~~~~~~~~i~-~~~~~~GT~VtF~ 248 (2307)
.| ..-...... .....+||+|+..
T Consensus 158 -~g-g~~~i~~~~~~~~~~~GT~I~L~ 182 (269)
T 1qy5_A 158 -DS-NEFSVIADPRGNTLGRGTTITLV 182 (269)
T ss_dssp -CS-SCEEEEECTTCSCSSSEEEEEEE
T ss_pred -eC-CEEEEEeccCCCcCCCCeEEEEE
Confidence 22 111111111 1124689999876
No 103
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=97.07 E-value=0.00053 Score=89.76 Aligned_cols=133 Identities=18% Similarity=0.233 Sum_probs=77.5
Q ss_pred HHHHHHHHHhhhhcc-------cC------CCCCeEEEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccc
Q psy7164 86 KIFDEILVNACDNKQ-------RD------PKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSS 152 (2307)
Q Consensus 86 ~i~~EILdNavDe~~-------r~------g~~~~I~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~ 152 (2307)
..+.|+|.||+|... .+ .....|.|.++.+++.|+|.|||.||+-+.... .|++.-+|+
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGiGMt~edl~~--------~l~tiA~Sg 101 (624)
T 2ioq_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVID--------HLGTIAKSG 101 (624)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH--------HHHHHCC--
T ss_pred HHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCCcEEEEEECCCCCCHHHHHH--------HHHhhcccc
Confidence 579999999999851 01 122468888888778999999999999764211 122222220
Q ss_pred cCCCcccccccccccccccccccccCCCC--CccccccCCCcccccccccccceeEEEEEeec--ccEEEEEEeecCCCc
Q psy7164 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYND--EEDKVTGGRNGYGAKLCNIFSSKFVVETSCSE--YKKSFKQVWKDNMSK 228 (2307)
Q Consensus 153 k~~~~~~~~~~~~~~~~~~~~~~g~nfd~--~~yk~sgGlhGVGasvvNAlS~~f~Vev~~~~--~gk~y~q~f~~g~~~ 228 (2307)
+ ..|+ .++.+ ..-....|..|+|...+=++|..++|.+.... ....|......| ..
T Consensus 102 ~--------~~f~-----------~~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~-~~ 161 (624)
T 2ioq_A 102 T--------KSFL-----------ESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGE-GE 161 (624)
T ss_dssp --------------------------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSS-SC
T ss_pred c--------HHHH-----------HHhcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCC-Ce
Confidence 0 0000 00110 01235789999999888889999999886422 123454443332 11
Q ss_pred CCCccccCC-CCCCCcEEEEEe
Q psy7164 229 VTSPEIKSG-SKDDFTKITFTP 249 (2307)
Q Consensus 229 ~~~~~i~~~-~~~~GT~VtF~P 249 (2307)
- .+... ...+||+|+...
T Consensus 162 ~---~i~~~~~~~~GT~I~L~L 180 (624)
T 2ioq_A 162 Y---TVADITKEDRGTEITLHL 180 (624)
T ss_dssp C---EEEEECCSSSEEEEEEEE
T ss_pred E---EEEECCCCCCCeEEEEEE
Confidence 1 11111 346899998763
No 104
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=96.91 E-value=0.001 Score=77.79 Aligned_cols=115 Identities=22% Similarity=0.245 Sum_probs=64.9
Q ss_pred eEEEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCcccc
Q psy7164 107 CIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKV 186 (2307)
Q Consensus 107 ~I~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~ 186 (2307)
.|.|.++.++.+|+|+|||.||.-+.... .|+++-.++ . ..|+ .....++ .-..
T Consensus 120 ~I~I~~Dk~~~tLtI~DNGiGMTkeeL~~--------~LgtIA~SG------t--k~Fl------e~l~~~~----~d~~ 173 (272)
T 3ied_A 120 IIKIKPDKEKKTLTITDNGIGMDKSELIN--------NLGTIAQSG------T--AKFL------KQIEEGK----ADSN 173 (272)
T ss_dssp CEEEEEETTTTEEEEEECSCCCCHHHHHH--------HTTCSCCHH------H--HHHH------HHHHTTS----SCTT
T ss_pred EEEEEEeCCCCEEEEEeCCCCCCHHHHHH--------HHHHHhhcc------h--hhHH------HHhhccc----cccc
Confidence 58888888888999999999999764321 111221120 0 0000 0000011 1134
Q ss_pred ccCCCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCcccc------CCCCCCCcEEEEEeC
Q psy7164 187 TGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIK------SGSKDDFTKITFTPD 250 (2307)
Q Consensus 187 sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~------~~~~~~GT~VtF~PD 250 (2307)
..|+.|||...+=.+++.++|.+. .+...|..+-..+ ..-+...+. +....+||+|+....
T Consensus 174 ~IGqFGVGFySaFmVAdkV~V~Sk--~dd~~~~WeS~g~-gsfti~~~~~~~~~~g~~~~~GT~I~L~Lk 240 (272)
T 3ied_A 174 LIGQFGVGFYSSFLVSNRVEVYTK--KEDQIYRWSSDLK-GSFSVNEIKKYDQEYDDIKGSGTKIILHLK 240 (272)
T ss_dssp CGGGSCCGGGGGGGTEEEEEEEEE--SSSCEEEEEECSS-SEEEEEECTTCTTCC--CCSSEEEEEEEEC
T ss_pred ccCcccceeheeeccCCEEEEEEc--CCCceEEEEECCC-CCEEEEECcccccccCCCCCCCcEEEEEEC
Confidence 679999999999889999999886 3455565443222 111111111 113468999987643
No 105
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=96.90 E-value=0.00095 Score=70.85 Aligned_cols=48 Identities=23% Similarity=0.347 Sum_probs=37.1
Q ss_pred chhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcc
Q psy7164 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIP 129 (2307)
Q Consensus 82 pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIP 129 (2307)
.-+..++.|+|.||+...........|.|.+..+++ .|+|+|||.|||
T Consensus 38 ~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~g~~ 87 (145)
T 1th8_A 38 TEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIP 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEECSSCCS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeCCEEEEEEEECCCCcC
Confidence 357789999999999876532224678888876554 689999999999
No 106
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=96.79 E-value=0.0011 Score=86.98 Aligned_cols=133 Identities=19% Similarity=0.230 Sum_probs=67.7
Q ss_pred HHHHHHHHHhhhhcc--c-----C------CCCCeEEEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccc
Q psy7164 86 KIFDEILVNACDNKQ--R-----D------PKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSS 152 (2307)
Q Consensus 86 ~i~~EILdNavDe~~--r-----~------g~~~~I~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~ 152 (2307)
..+.|+|.||+|... | + .....|.|.++.++..|+|.|||.||.-+.... .|++.-+||
T Consensus 48 ifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGiGMt~edl~~--------~l~tIA~SG 119 (666)
T 2o1u_A 48 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVK--------NLGTIAKSG 119 (666)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH--------HTTC-----
T ss_pred HHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCCCEEEEEECCCCCCHHHHHH--------HHhhhcccc
Confidence 479999999999851 1 1 122468888887778999999999998764211 111111110
Q ss_pred cCCCcccccccccccccccccccccCCCCC-----ccccccCCCcccccccccccceeEEEEEeecccEEEEEEeecCCC
Q psy7164 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYNDE-----EDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMS 227 (2307)
Q Consensus 153 k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~-----~yk~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~ 227 (2307)
+ ..|+ .++.+. .-....|+.|||...+=+++..++|.+.... ...|.... .| .
T Consensus 120 t--------k~f~-----------~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~-~~~~~W~s-~g-g 177 (666)
T 2o1u_A 120 T--------SEFL-----------NKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNN-DTQHIWES-DS-N 177 (666)
T ss_dssp ---------------------------------------------CTTGGGGGTEEEEEEEEECTT-SCCEEEEE-SS-S
T ss_pred c--------HHHH-----------HHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCC-CceEEEEE-eC-C
Confidence 0 0000 011110 1234679999999988888899999886422 22343332 22 2
Q ss_pred cCCCcccc-CCCCCCCcEEEEE
Q psy7164 228 KVTSPEIK-SGSKDDFTKITFT 248 (2307)
Q Consensus 228 ~~~~~~i~-~~~~~~GT~VtF~ 248 (2307)
.-+..... .....+||+|+..
T Consensus 178 ~~ti~~~~~~~~~~~GT~I~L~ 199 (666)
T 2o1u_A 178 EFSVIADPRGNTLGRGTTITLV 199 (666)
T ss_dssp CCEEEECTTCCSSSSEEEEEEE
T ss_pred eEEEEecccCCCCCCCeEEEEE
Confidence 11111111 1124689999876
No 107
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=96.56 E-value=0.0034 Score=67.50 Aligned_cols=46 Identities=24% Similarity=0.349 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVEH 133 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~ 133 (2307)
-|..++.++|+||+... ...|.|.+..+++ .|+|.|||.|||.+..
T Consensus 47 ~l~~il~nll~NAik~~-----~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~ 94 (161)
T 1bxd_A 47 SIKRAVANMVVNAARYG-----NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQR 94 (161)
T ss_dssp HHHHHHHHHHHHHHTTC-----CSCEEEEEEEETTEEEEEEEEESSCSCTTGG
T ss_pred HHHHHHHHHHHHHHhhc-----CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHH
Confidence 47788888888888754 4578888876555 5899999999997643
No 108
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=96.54 E-value=0.0027 Score=67.27 Aligned_cols=46 Identities=26% Similarity=0.485 Sum_probs=36.5
Q ss_pred chhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCccccc
Q psy7164 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVE 132 (2307)
Q Consensus 82 pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~ 132 (2307)
.-|.+++.++|+||+.... + .|.|.+..+++ .|+|.|||.|||.+.
T Consensus 43 ~~l~~il~nLl~NAi~~~~--~---~i~i~~~~~~~~~~i~i~D~G~gi~~~~ 90 (152)
T 1id0_A 43 NDFVEVMGNVLDNACKYCL--E---FVEISARQTDEHLYIVVEDDGPGIPLSK 90 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCS--S---EEEEEEEECSSCEEEEEEESSSCCCGGG
T ss_pred HHHHHHHHHHHHHHHHhCc--C---eEEEEEEecCCEEEEEEEeCCCCcCHHH
Confidence 3488899999999998753 1 78888876554 689999999999764
No 109
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=96.49 E-value=0.0017 Score=76.04 Aligned_cols=87 Identities=15% Similarity=0.109 Sum_probs=53.2
Q ss_pred CCCCccceEEEEeee-eccccccccccCC--CCHHHHHHHHHHcCCEEEEec---cCCccEEEeCCCChhhHhhcCCCCc
Q psy7164 1342 RGGIFQGVAIFVNGY-TKHCMMLDAYYIV--PSAEELKALMMLHGGIYHHYE---SSRTTHIIASNLPHTKIKKLKPGDK 1415 (2307)
Q Consensus 1342 ~~~IF~G~~iyVnGy-t~~~~~~~~~~~~--ps~~eL~~li~~hGG~~~~~l---~~~vTHIIas~l~~~K~~~~k~~~k 1415 (2307)
++.+|+|++||+-+. .+. ...+..+-+ +..+.+..++..+||++ ..+ +...+|+|... .. . ...+.+.+
T Consensus 148 ~~~Lf~g~~i~~~~~~~~~-~~~~~~~~~~g~~~~~~~~i~~~~Ga~~-~~v~~~~~~~~d~v~~~-~~-~-~~~~~~~~ 222 (241)
T 2vxb_A 148 RKGPLFGKKILFIIPEAKS-WQKKIENTEQGQKALAHVYHALALGADV-EIRPNVAHLECDLILTM-DG-N-IVDETNCP 222 (241)
T ss_dssp CCCTTTTCEEEECCCC-------------CHHHHHHHHHHHHHTTCEE-ECCSCCSSCCCSEEECS-SS-C-CCSSCSSC
T ss_pred cCcCCCCcEEEEEeCCCcc-cccccccccccchHHHHHHHHHHcCCce-ecccccccCCccEEEEC-Cc-c-ccccCCCC
Confidence 457999999998433 210 000000000 01256677777799999 444 33457777753 21 1 12234799
Q ss_pred eeccChHHHHHHhCCCCC
Q psy7164 1416 IIKPEWIVDSISAGKLLD 1433 (2307)
Q Consensus 1416 IVkpeWI~DSI~~gklLp 1433 (2307)
||+++||+|||..|++|+
T Consensus 223 iV~~eWv~~~i~~g~~l~ 240 (241)
T 2vxb_A 223 VVDPEWIVECLISQSDIS 240 (241)
T ss_dssp EECHHHHHHHHHHTSCTT
T ss_pred EecHHHHHHHHHhceecC
Confidence 999999999999999986
No 110
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=96.42 E-value=0.0061 Score=64.29 Aligned_cols=48 Identities=27% Similarity=0.402 Sum_probs=37.9
Q ss_pred chhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCccccc
Q psy7164 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVE 132 (2307)
Q Consensus 82 pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~ 132 (2307)
.-|..++.++|+||+.... ....|.|.+..+++ .|+|.|||.|||.+.
T Consensus 46 ~~l~~il~nll~NAi~~~~---~~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~ 95 (152)
T 3a0y_A 46 TRIKQVLINLVQNAIEATG---ENGKIKITSEDMYTKVRVSVWNSGPPIPEEL 95 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHC---TTCEEEEEEEECSSEEEEEEEEESCCCCGGG
T ss_pred HHHHHHHHHHHHHHHHhcC---CCCEEEEEEEecCCEEEEEEEeCCCCcCHHH
Confidence 3588899999999998753 23578888876544 688999999999764
No 111
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=96.41 E-value=0.002 Score=72.13 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCCeEEEEeCCCCcccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEH 133 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~gsIsV~DnGrGIPvd~~ 133 (2307)
-|.+++.++|+||+.... ....|.|.+..+ .|+|+|||.|||.+..
T Consensus 117 ~l~~il~nLl~NAi~~~~---~~~~i~i~~~~~--~i~V~D~G~Gi~~~~~ 162 (222)
T 3jz3_A 117 LLSLLVRNLLDNAVRYSP---QGSVVDVTLNAD--NFIVRDNGPGVTPEAL 162 (222)
T ss_dssp HHHHHHHHHHHHHHHTCC---TTCEEEEEECSS--EEEEECSCC-------
T ss_pred HHHHHHHHHHHHHHHcCC---CCCeEEEEEccC--eEEEEECCCCCCHHHH
Confidence 478899999999998643 345688888764 4999999999997643
No 112
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=96.21 E-value=0.002 Score=75.22 Aligned_cols=87 Identities=18% Similarity=0.232 Sum_probs=64.0
Q ss_pred CCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEecc----CCccEEEeCC--CChh----hHhh-cC
Q psy7164 1343 GGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYES----SRTTHIIASN--LPHT----KIKK-LK 1411 (2307)
Q Consensus 1343 ~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~----~~vTHIIas~--l~~~----K~~~-~k 1411 (2307)
..+|.|+.||+-+- . |....|+++|...||++..-.. ...||++... ++.. +... .+
T Consensus 133 ~~lF~g~~v~l~~~-~-----------~~~~~l~~ii~agGg~vl~~~~~~~~~~~t~~~vd~~~~~~~~~~~~~~~~~~ 200 (235)
T 3al2_A 133 EGAFSGWKVILHVD-Q-----------SREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDLNKLKPDDSGVNIAEAAA 200 (235)
T ss_dssp SSTTTTCEEEEECC-H-----------HHHHHHHHHHHHTTCEECSSCCGGGGGGCSEEEECC--------CCCHHHHHH
T ss_pred CCCCCCcEEEEecC-C-----------CcHHHHHHHHHcCCcEEecCCCCCccccCceEEEecccCCccchhHHHHHHHH
Confidence 47999999999764 2 5667899999999999975432 2358987652 1111 1222 22
Q ss_pred CCCceeccChHHHHHHhCCCCCCcCceeee
Q psy7164 1412 PGDKIIKPEWIVDSISAGKLLDHKKYLLYT 1441 (2307)
Q Consensus 1412 ~~~kIVkpeWI~DSI~~gklLp~~~Y~l~~ 1441 (2307)
.+.+||+++||+|||-.+.+.++..|+|-.
T Consensus 201 ~~i~~v~~ewlld~i~~~~~~~~~~y~l~~ 230 (235)
T 3al2_A 201 QNVYCLRTEYIADYLMQESPPHVENYCLPE 230 (235)
T ss_dssp TTCEEEETHHHHHHHHCSSCCCHHHHBCGG
T ss_pred cCCcEEcHHHHHHHHhcCCCCChhheEccc
Confidence 489999999999999999999999998753
No 113
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=96.19 E-value=0.0045 Score=71.65 Aligned_cols=52 Identities=21% Similarity=0.374 Sum_probs=38.6
Q ss_pred chhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcccccc
Q psy7164 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVEH 133 (2307)
Q Consensus 82 pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~ 133 (2307)
.-|.+++..+|+||++.....+....|.|.+..+++ .|+|.|||.|||.+..
T Consensus 137 ~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 190 (258)
T 2c2a_A 137 TRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAK 190 (258)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGT
T ss_pred HHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecCCCeEEEEEEecCCCCCHHHH
Confidence 358889999999999865432333568888776544 5889999999997643
No 114
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=96.14 E-value=0.0027 Score=73.34 Aligned_cols=84 Identities=10% Similarity=0.269 Sum_probs=58.9
Q ss_pred CCCccceEEEEeeee--ccccccccccCCCCHHHHHHHHHHcCCEEEE---ecc-------CCccEEEeCCCChhhHhhc
Q psy7164 1343 GGIFQGVAIFVNGYT--KHCMMLDAYYIVPSAEELKALMMLHGGIYHH---YES-------SRTTHIIASNLPHTKIKKL 1410 (2307)
Q Consensus 1343 ~~IF~G~~iyVnGyt--~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~---~l~-------~~vTHIIas~l~~~K~~~~ 1410 (2307)
..+|+|+.|||.+.. . |+..+|..+|..+||++.. |-. ..-.+||++.-+..-+..|
T Consensus 111 ~~LF~G~~f~it~~~~~~-----------p~~~~l~~iI~~~GG~v~~~p~~~~~~~~~~~~~~~~vis~~~d~~~~~~f 179 (220)
T 3l41_A 111 PSLLEDYVVYLTSKTVAP-----------ENVPAVISIVKSNGGVCSTLNVYNKRLARHLEDGNVVLITCNEDSHIWTNF 179 (220)
T ss_dssp SCTTTTSEEEEETTSSCG-----------GGHHHHHHHHHHTTCEEEEECSCCHHHHHHHHHCCEEEEECGGGHHHHTTT
T ss_pred chhhhheeEEEeccccCC-----------CCCceEEEEEecCCcEechhhHHHHHHHHhcccCCEEEEEeCCcchHHHHh
Confidence 489999999998776 5 8899999999999999988 211 0125778874222222222
Q ss_pred C------CCCceeccChHHHHHHhCCCCCCcCce
Q psy7164 1411 K------PGDKIIKPEWIVDSISAGKLLDHKKYL 1438 (2307)
Q Consensus 1411 k------~~~kIVkpeWI~DSI~~gklLp~~~Y~ 1438 (2307)
+ .+.+||+++||++||=..++ .|.+.+
T Consensus 180 ~~~~~~~~~~~i~~~e~ll~~il~q~l-~~~~~~ 212 (220)
T 3l41_A 180 LDNASQNKTIFLQNYDWLIKTVLRQEI-DVNDRI 212 (220)
T ss_dssp HHHHTTCTTEEEEEHHHHHHHHHHTCC-CTTCCB
T ss_pred hccccccceEEEechhHHHHHHHHHHc-CcchHH
Confidence 2 13569999999999997655 444443
No 115
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=96.07 E-value=0.0045 Score=67.69 Aligned_cols=47 Identities=28% Similarity=0.466 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEE--EccCC--eEEEEeCCCCccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITV--NQETN--TISVWNNGKGIPVVE 132 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i--~~d~g--sIsV~DnGrGIPvd~ 132 (2307)
-|..++.++|+||++.... ...|.|.+ ..+++ .|+|.|||.|||.+.
T Consensus 43 ~l~~il~nLl~NAi~~~~~---~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~ 93 (177)
T 3sl2_A 43 KITQVLDNIISNALKYSPE---GGHVTFSIDVNEEEELLYISVKDEGIGIPKKD 93 (177)
T ss_dssp HHHHHHHHHHHHHHHTCCT---TCCEEEEEEEETTTTEEEEEEECCSSCCCTTT
T ss_pred HHHHHHHHHHHHHHHhCCC---CCeEEEEEEEccCCCEEEEEEEECCCCCCHHH
Confidence 4888999999999987632 23455555 65444 688999999999764
No 116
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=95.86 E-value=0.0053 Score=76.16 Aligned_cols=52 Identities=23% Similarity=0.240 Sum_probs=39.9
Q ss_pred chhHHHHHHHHHHhhhhcccCCC-----CCeEEEEEEccCC--eEEEEeCCCCcccccc
Q psy7164 82 PGLYKIFDEILVNACDNKQRDPK-----MNCIKITVNQETN--TISVWNNGKGIPVVEH 133 (2307)
Q Consensus 82 pGL~~i~~EILdNavDe~~r~g~-----~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~ 133 (2307)
.-|.+++.++|.||+......+. .+.|.|.+..+++ .|+|.|||.|||-+..
T Consensus 237 ~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~ 295 (388)
T 1gkz_A 237 MPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDL 295 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTT
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHH
Confidence 35889999999999998653321 2379999876544 6899999999997644
No 117
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=95.82 E-value=0.0062 Score=64.66 Aligned_cols=48 Identities=23% Similarity=0.242 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC------------eEEEEeCCCCccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN------------TISVWNNGKGIPVVE 132 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g------------sIsV~DnGrGIPvd~ 132 (2307)
-|..++.++|+||+...... ...|.|.+..+++ .|+|.|||.|||.+.
T Consensus 48 ~l~~il~nLl~NAik~~~~~--~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~ 107 (160)
T 1r62_A 48 QIEQVLLNIVRNALQALGPE--GGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHL 107 (160)
T ss_dssp HHHHHHHHHHHHHHHHHGGG--CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC----
T ss_pred HHHHHHHHHHHHHHHHhhcc--CCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHH
Confidence 48889999999999876421 4578888765433 588999999999764
No 118
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=95.79 E-value=0.0074 Score=63.93 Aligned_cols=48 Identities=23% Similarity=0.395 Sum_probs=36.7
Q ss_pred chhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcccccc
Q psy7164 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVEH 133 (2307)
Q Consensus 82 pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~ 133 (2307)
.-|..++.++|+||+.... ...|.|.+..+++ .|+|.|||.|||.+..
T Consensus 45 ~~l~~il~nLl~NA~~~~~----~~~I~i~~~~~~~~~~i~v~D~G~gi~~~~~ 94 (150)
T 1ysr_A 45 AGLRLAVDNAIANAVKHGG----ATLVQLSAVSSRAGVEIAIDDNGSGVPEGER 94 (150)
T ss_dssp HHHHHHHHHHHHHHHHTTC----CSEEEEEEEEETTEEEEEEEESSSCCCGGGH
T ss_pred HHHHHHHHHHHHHHHhcCC----CcEEEEEEEecCCEEEEEEEECCCCCCHHHH
Confidence 3578899999999998642 2378888876544 6899999999997643
No 119
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=95.55 E-value=0.02 Score=66.20 Aligned_cols=48 Identities=17% Similarity=0.342 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVEH 133 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~ 133 (2307)
-|..++.++|+||++... ....|.|.+..+++ .|+|.|||.|||.+..
T Consensus 155 ~l~~il~nLl~NA~~~~~---~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 204 (268)
T 4ew8_A 155 RLAQTLDHLVENALRQTP---PGGRVTLSARRALGEVRLDVSDTGRGVPFHVQ 204 (268)
T ss_dssp HHHHHHHHHHHHHHHHSC---TTCEEEEEEEECSSEEEEEEEESSCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCC---CCCEEEEEEEecCCEEEEEEEcCCCCCCHHHH
Confidence 488899999999998753 23588888877555 7889999999997643
No 120
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=95.53 E-value=0.0066 Score=75.56 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHhhhhcccCC----CCCeEEEEEEccCC--eEEEEeCCCCcccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDP----KMNCIKITVNQETN--TISVWNNGKGIPVVEH 133 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g----~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~ 133 (2307)
-|.+++.++|+||+......+ ....|.|.+..+++ .|+|.|+|.|||-+..
T Consensus 230 ~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~ 286 (394)
T 2e0a_A 230 HLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRII 286 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEECSSEEEEEEEECSCCCCGGGH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHH
Confidence 488999999999998764222 13468898876544 6899999999997643
No 121
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=95.22 E-value=0.0085 Score=74.53 Aligned_cols=109 Identities=17% Similarity=0.273 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHhhhhcccCC----CCCeEEEEEEccCC--eEEEEeCCCCcccccccCCCccccEEEEEeecccccCCC
Q psy7164 83 GLYKIFDEILVNACDNKQRDP----KMNCIKITVNQETN--TISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYND 156 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g----~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~ 156 (2307)
-|.+++.++|+||+......+ ....|.|.+..+++ .|+|.|||.|||-+..+. ||...+++
T Consensus 231 ~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~--------iF~~f~~~----- 297 (394)
T 2btz_A 231 HLYHMLFELFKNAMRATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIER--------LFSYMYST----- 297 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHH--------HTCTTTTC-----
T ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHH--------HhcccccC-----
Confidence 488999999999999764322 12468888876544 689999999999764321 23222222
Q ss_pred cccccccccccccccccccccCCC-CCccccccCCCccccccccccccee--EEEEEee-cccEEEEEEeec
Q psy7164 157 EEDKVTGVVPTMIFGHLLTSSNYN-DEEDKVTGGRNGYGAKLCNIFSSKF--VVETSCS-EYKKSFKQVWKD 224 (2307)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~g~nfd-~~~yk~sgGlhGVGasvvNAlS~~f--~Vev~~~-~~gk~y~q~f~~ 224 (2307)
..-. .+......+..|+|+++|..+.+.+ ++++... ..|-.|...+-.
T Consensus 298 --------------------~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~ 349 (394)
T 2btz_A 298 --------------------APTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKA 349 (394)
T ss_dssp --------------------CC--------------CCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEES
T ss_pred --------------------CCCCCcccCCCCCCCccCCHHHHHHHHHHhCCEEEEEecCCCceEEEEEecC
Confidence 0000 0001122345899999999999886 3333322 246666666543
No 122
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=95.21 E-value=0.0093 Score=74.54 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHhhhhcccCC----CCCeEEEEEEccCC--eEEEEeCCCCcccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDP----KMNCIKITVNQETN--TISVWNNGKGIPVVEH 133 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g----~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~ 133 (2307)
-|.+++.++|+||+......+ ....|.|.+..+++ .|+|.|||.|||-+..
T Consensus 243 ~L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~ 299 (407)
T 2q8g_A 243 HLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKI 299 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEECSSEEEEEEEECSCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHH
Confidence 478899999999998754221 13468888876544 6899999999997644
No 123
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=95.19 E-value=0.0088 Score=67.94 Aligned_cols=48 Identities=13% Similarity=0.235 Sum_probs=37.1
Q ss_pred chhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCccccc
Q psy7164 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVE 132 (2307)
Q Consensus 82 pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~ 132 (2307)
.-|..++.++|+||+.... ....|.|.+..+++ .|+|.|||.|||.+.
T Consensus 122 ~~l~~il~nLl~NA~~~~~---~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~ 171 (244)
T 3d36_A 122 EKFRQCLLNVMKNAIEAMP---NGGTLQVYVSIDNGRVLIRIADTGVGMTKEQ 171 (244)
T ss_dssp HHHHHHHHHHHHHHHHTCT---TCEEEEEEEEEETTEEEEEEEECSSCCCHHH
T ss_pred HHHHHHHHHHHHHHHHhcc---CCCeEEEEEEEeCCEEEEEEEecCCCCCHHH
Confidence 3578899999999998642 34578888876555 688999999999764
No 124
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=95.11 E-value=0.022 Score=68.18 Aligned_cols=48 Identities=27% Similarity=0.405 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVEH 133 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~ 133 (2307)
-|.+++.++|.||+.... ....|.|.+..+++ .|+|.|||.|||.+..
T Consensus 244 ~l~~vl~nLl~NA~k~~~---~~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~ 293 (349)
T 3a0r_A 244 RIKQVLINLVQNAIEATG---ENGKIKITSEDMYTKVRVSVWNSGPPIPEELK 293 (349)
T ss_dssp HHHHHHHHHHTHHHHTTC---TTCCEEEEEEEETTEEEEEEEEESCCCCGGGG
T ss_pred HHHHHHHHHHHHHHHhcc---CCCEEEEEEEecCCEEEEEEEECCCCCChHHH
Confidence 478899999999998652 34578888876554 6889999999998744
No 125
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=95.03 E-value=0.0086 Score=75.22 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHhhhhcccCC-----CCCeEEEEEEccCC--eEEEEeCCCCcccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDP-----KMNCIKITVNQETN--TISVWNNGKGIPVVEH 133 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g-----~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~ 133 (2307)
-|.+++.++|+||+......+ ....|.|.+..+++ .|+|.|||.|||-+..
T Consensus 253 ~L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l 310 (419)
T 1y8o_A 253 HLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKI 310 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHH
Confidence 488999999999998754211 03478888876544 7889999999997654
No 126
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=94.73 E-value=0.019 Score=71.23 Aligned_cols=50 Identities=24% Similarity=0.363 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHhhhhcccC---------CCCCeEEEEEEccCC--eEEEEeCCCCccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRD---------PKMNCIKITVNQETN--TISVWNNGKGIPVVE 132 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~---------g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~ 132 (2307)
-+..++.++|.||+|+.... .....|.|.+..+++ .|+|.|||+|||.+.
T Consensus 106 ~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~ 166 (379)
T 1b3q_A 106 EIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEK 166 (379)
T ss_dssp HHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEEeCCEEEEEEEECCCCCCHHH
Confidence 45556999999999986322 245688888877655 688999999999874
No 127
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=94.12 E-value=0.054 Score=56.17 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=36.9
Q ss_pred chhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCcccccc
Q psy7164 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVEH 133 (2307)
Q Consensus 82 pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~~ 133 (2307)
.-|+.++.|+|.||+... ..+.|.|.+..+++ .|+|.|||.|||.+..
T Consensus 39 ~~l~~il~nll~Na~k~~----~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 39 NILSMCLKEAVTNVVKHS----QAKTCRVDIQQLWKEVVITVSDDGTFKGEENS 88 (128)
T ss_dssp HHHHHHHHHHHHHHHHHT----CCSEEEEEEEEETTEEEEEEEESSCCCSCSSC
T ss_pred HHHHHHHHHHHHHHHhcC----CCcEEEEEEEEeCCEEEEEEEECCcCcCcccC
Confidence 456778888888888764 23578888876655 7899999999997643
No 128
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=93.37 E-value=0.085 Score=58.12 Aligned_cols=50 Identities=24% Similarity=0.363 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHhhhhcccC---------CCCCeEEEEEEccCC--eEEEEeCCCCccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRD---------PKMNCIKITVNQETN--TISVWNNGKGIPVVE 132 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~---------g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~ 132 (2307)
-+.+++.++|.||+...... .....|.|.+..+++ .|+|.|||.|||.+.
T Consensus 47 ~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~ 107 (189)
T 1i58_A 47 EIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEK 107 (189)
T ss_dssp HHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEEETTEEEEEEEECSSCCCHHH
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEecCCEEEEEEEeCCCCcCHHH
Confidence 45566999999999975321 345688888876555 689999999999763
No 129
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=92.98 E-value=0.042 Score=52.57 Aligned_cols=51 Identities=31% Similarity=0.426 Sum_probs=44.3
Q ss_pred CCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhC--cchHHHHHHHhc
Q psy7164 1981 LSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVG--NKNGLTLYKHCR 2031 (2307)
Q Consensus 1981 V~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG--~k~G~~L~~~ar 2031 (2307)
|.+|+||+..+..+|...||+|+.||+.++...|....| ...+.+|...+|
T Consensus 9 l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr 61 (70)
T 1wcn_A 9 LLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAAR 61 (70)
T ss_dssp HHSSTTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHH
Confidence 557889999999999999999999999999999998877 456677776665
No 130
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=92.83 E-value=0.18 Score=62.96 Aligned_cols=86 Identities=12% Similarity=0.100 Sum_probs=56.6
Q ss_pred chhHHHHHHHHHHhhhhcccCCCCCeEEEEEEcc-CC--eEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcc
Q psy7164 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQE-TN--TISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEE 158 (2307)
Q Consensus 82 pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d-~g--sIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~ 158 (2307)
.-+.-++.|++.||+.+....+....|.|.+..+ ++ .|+|+|+|+|+|.. ..
T Consensus 296 ~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~------------------~~------- 350 (399)
T 3ke6_A 296 ADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHR------------------DG------- 350 (399)
T ss_dssp HHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTSEEEEEEEESCBC-------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCCEEEEEEEECCCCCCCC------------------CC-------
Confidence 3466799999999999875444456788888754 33 78999999999864 00
Q ss_pred cccccccccccccccccccCCCCCccccccCCCcccccccccccceeEEEEEeecccEEEEEEee
Q psy7164 159 DKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWK 223 (2307)
Q Consensus 159 ~~~~~~~~~~~~~~~~~g~nfd~~~yk~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~ 223 (2307)
.+.+|.|+.+|..|+..+.+... ..|+.....|.
T Consensus 351 -----------------------------~~~~G~GL~lv~~l~~~~~~~~~--~~G~~v~~~~~ 384 (399)
T 3ke6_A 351 -----------------------------ARGRGRGLAMAEALVSEARIMHG--AGGTTATLTHR 384 (399)
T ss_dssp -----------------------------------CHHHHHTTSSEEEEEEE--TTEEEEEEEEE
T ss_pred -----------------------------CCCCCcHHHHHHHHHHheeeEEC--CCcEEEEEEEE
Confidence 12358999999999999887643 35666666554
No 131
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=92.59 E-value=0.098 Score=58.61 Aligned_cols=46 Identities=15% Similarity=0.144 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVE 132 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~ 132 (2307)
.|+.++.|+|.||+... ..+.|.|.+..+++ .|+|.|||.|||.+.
T Consensus 130 ~l~~il~nll~Na~k~~----~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~ 177 (218)
T 3ehh_A 130 ILSMCLKEAVTNVVKHS----QAKTCRVDIQQLWKEVVITVSDDGTFKGEEN 177 (218)
T ss_dssp HHHHHHHHHHHHHHHHT----CCSEEEEEEEEETTEEEEEEEESSCCCC---
T ss_pred HHHHHHHHHHHHHHHhC----CCCEEEEEEEEeCCEEEEEEEECCcCCCCCC
Confidence 46678888888888764 23578888876555 789999999999764
No 132
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=92.58 E-value=0.022 Score=75.09 Aligned_cols=76 Identities=20% Similarity=0.306 Sum_probs=0.0
Q ss_pred CCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCChhhHhhcCC-CCceeccCh
Q psy7164 1343 GGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKP-GDKIIKPEW 1421 (2307)
Q Consensus 1343 ~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~K~~~~k~-~~kIVkpeW 1421 (2307)
.+.|.|.+|.+.|... .++.+++.+|..+||++...++.+|+|+|++.-..+|..+.+. |++||+.+|
T Consensus 585 ~~~l~G~~~v~TG~l~-----------~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~gsKl~KA~~lgI~Ii~E~~ 653 (667)
T 1dgs_A 585 SDLLSGLTFVLTGELS-----------RPREEVKALLGRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVAVLTEEE 653 (667)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCEEEEeCCCC-----------CCHHHHHHHHHHcCCEEcCcccCCeeEEEECCCCChHHHHHHHCCCeEEeHHH
Confidence 4579999999999985 4789999999999999999999999999999877788777655 899999999
Q ss_pred HHHHHHhC
Q psy7164 1422 IVDSISAG 1429 (2307)
Q Consensus 1422 I~DSI~~g 1429 (2307)
.++.++.+
T Consensus 654 f~~~l~~~ 661 (667)
T 1dgs_A 654 FWRFLKEK 661 (667)
T ss_dssp --------
T ss_pred HHHHHhcC
Confidence 99999765
No 133
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=91.95 E-value=0.08 Score=61.53 Aligned_cols=47 Identities=11% Similarity=-0.027 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC--eEEEEeCCCCccccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVE 132 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g--sIsV~DnGrGIPvd~ 132 (2307)
-+.+++.-+|.||++.. +....|.|.+..+++ .|+|.|+|.||+++.
T Consensus 146 ~~~qvl~NLl~NA~~a~---~~gg~I~v~~~~~~~~~~i~V~D~G~Gi~i~~ 194 (247)
T 4fpp_A 146 PSSRAVLNIAQIAASAL---PAGGVATVKGVAADGRFSIIADAKGPRARLRP 194 (247)
T ss_dssp HHHHHHHHHHHHHHTTC---TTCCEEEEEEEEETTEEEEEEEEESTTCCCCH
T ss_pred HHHHHHHHHHHHHHHhc---CCCCeEEEEEEEECCEEEEEEEEcCCCCCCCH
Confidence 35677778888888753 334588888877655 688999999998763
No 134
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=91.80 E-value=0.22 Score=51.05 Aligned_cols=45 Identities=22% Similarity=0.382 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccCC-eEEEEeCCCCcccc
Q psy7164 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN-TISVWNNGKGIPVV 131 (2307)
Q Consensus 83 GL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~g-sIsV~DnGrGIPvd 131 (2307)
-|..++.|+|+||+... ....|.|.+..+++ .|+|.|||.|||.+
T Consensus 43 ~l~~il~nll~NA~k~~----~~~~i~i~~~~~~~~~i~v~D~G~gi~~~ 88 (129)
T 3zxo_A 43 QAEAVVREAVSNAVRHA----AASTLTVRVKVDDDLCIEVTDNGRGMPDE 88 (129)
T ss_dssp HHHHHHHHHHHHCCCCS----SCCEEEEEEEESSEEEEEEEECCCCCTTT
T ss_pred HHHHHHHHHHHHHHHhC----CCceEEEEEEEcCCEEEEEecCCCCCCcc
Confidence 46667777777777654 34588888876433 68899999999864
No 135
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=91.72 E-value=0.18 Score=51.54 Aligned_cols=46 Identities=22% Similarity=0.279 Sum_probs=33.6
Q ss_pred chhHHHHHHHHHHhhhhcccCCCCCeEEEEEEccC-CeEEEEeCCCCcccc
Q psy7164 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQET-NTISVWNNGKGIPVV 131 (2307)
Q Consensus 82 pGL~~i~~EILdNavDe~~r~g~~~~I~V~i~~d~-gsIsV~DnGrGIPvd 131 (2307)
..|+.++.|+|.||+... ..+.|.|.+..++ -.|+|.|||.|||.+
T Consensus 38 ~~l~~il~nll~Na~k~~----~~~~i~i~~~~~~~~~i~v~D~G~gi~~~ 84 (124)
T 3zxq_A 38 NHAEAVLREAVSNAVRHA----NATSLAINVSVEDDVRVEVVDDGVGISGD 84 (124)
T ss_dssp HHHHHHHHHHHHHHHTCT----TCCEEEEEEEEEEEEEEEEEECCCSSCGG
T ss_pred HHHHHHHHHHHHHHHHhC----CCCEEEEEEEeCCCEEEEEEECCCCCCcc
Confidence 356678888888887754 2357888876532 378999999999965
No 136
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=91.11 E-value=0.04 Score=72.70 Aligned_cols=75 Identities=20% Similarity=0.260 Sum_probs=0.0
Q ss_pred CCCccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEEeccCCccEEEeCCCChhhHhhcCC-CCceeccCh
Q psy7164 1343 GGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKP-GDKIIKPEW 1421 (2307)
Q Consensus 1343 ~~IF~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~K~~~~k~-~~kIVkpeW 1421 (2307)
.+.|.|.+|.|.|... .-++.+++.+|..+||++...++.+|+++|++.-..+|..+.+. |++||+.+|
T Consensus 595 ~~~l~G~~~v~TG~l~----------~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~gsKl~KA~~lgI~Ii~E~~ 664 (671)
T 2owo_A 595 DSPFAGKTVVLTGSLS----------QMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAE 664 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcccCcEEEEcCCCC----------CCCHHHHHHHHHHcCCEEeCcccCceeEEEECCCCChHHHHHHHCCCcEEcHHH
Confidence 3579999999999885 02789999999999999999999999999999877788777655 899999999
Q ss_pred HHHHHH
Q psy7164 1422 IVDSIS 1427 (2307)
Q Consensus 1422 I~DSI~ 1427 (2307)
.++.+.
T Consensus 665 f~~~l~ 670 (671)
T 2owo_A 665 MLRLLG 670 (671)
T ss_dssp ------
T ss_pred HHHHhc
Confidence 998874
No 137
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=89.10 E-value=0.35 Score=45.22 Aligned_cols=51 Identities=24% Similarity=0.324 Sum_probs=44.0
Q ss_pred CCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhCcch-HHHHHHHhcC
Q psy7164 1981 LSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKN-GLTLYKHCRG 2032 (2307)
Q Consensus 1981 V~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG~k~-G~~L~~~arG 2032 (2307)
+.++||||++..++|-.. +.++.+|...+.++|....|.+. +..+|++++.
T Consensus 6 L~~IpGIG~kr~~~LL~~-Fgs~~~i~~As~eeL~~vig~~~~A~~I~~~l~~ 57 (63)
T 2a1j_A 6 LLKMPGVNAKNCRSLMHH-VKNIAELAALSQDELTSILGNAANAKQLYDFIHT 57 (63)
T ss_dssp HHTSTTCCHHHHHHHHHH-CSSHHHHHTCCHHHHHHHHSCHHHHHHHHHHHHC
T ss_pred HHcCCCCCHHHHHHHHHH-cCCHHHHHHCCHHHHHHHcCchHHHHHHHHHHhc
Confidence 457899999999988432 34899999999999999999999 9999999874
No 138
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=86.70 E-value=0.44 Score=47.13 Aligned_cols=51 Identities=24% Similarity=0.324 Sum_probs=44.0
Q ss_pred CCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhCcch-HHHHHHHhcC
Q psy7164 1981 LSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKN-GLTLYKHCRG 2032 (2307)
Q Consensus 1981 V~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG~k~-G~~L~~~arG 2032 (2307)
+.+|||||++..++|-.. +.++.+|..++.++|...+|.+. +..+|++++.
T Consensus 20 L~~IpGIG~kr~~~LL~~-FgSl~~i~~AS~eEL~~vig~~~~A~~I~~~l~~ 71 (84)
T 1z00_B 20 LLKMPGVNAKNCRSLMHH-VKNIAELAALSQDELTSILGNAANAKQLYDFIHT 71 (84)
T ss_dssp HHTCSSCCHHHHHHHHHH-SSCHHHHHHSCHHHHHHHHSCHHHHHHHHHHHTS
T ss_pred HHhCCCCCHHHHHHHHHH-cCCHHHHHHCCHHHHHHHhCchHHHHHHHHHHHh
Confidence 346889999999998542 56899999999999999999988 9999999873
No 139
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=86.16 E-value=0.27 Score=49.51 Aligned_cols=35 Identities=31% Similarity=0.440 Sum_probs=31.1
Q ss_pred CCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHH
Q psy7164 1980 PLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRL 2014 (2307)
Q Consensus 1980 PV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L 2014 (2307)
.+++||+||+++++.|.+.||.|+.||+.+....+
T Consensus 5 ~L~~LPNiG~~~e~~L~~vGI~s~e~L~~~Ga~~a 39 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEA 39 (93)
T ss_dssp CGGGSTTCCHHHHHHHHHTTCCSHHHHHHHHHHHH
T ss_pred HhhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHH
Confidence 57899999999999999999999999998765544
No 140
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=85.41 E-value=0.4 Score=48.35 Aligned_cols=35 Identities=31% Similarity=0.440 Sum_probs=31.4
Q ss_pred CCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHH
Q psy7164 1980 PLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRL 2014 (2307)
Q Consensus 1980 PV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L 2014 (2307)
.+++||+||+.+++.|.+.||.|+.||+.+.....
T Consensus 5 ~L~dLPNig~~~e~~L~~~GI~t~~~Lr~~Ga~~a 39 (93)
T 3mab_A 5 NLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEA 39 (93)
T ss_dssp CGGGSTTCCHHHHHHHHHTTCCSHHHHHHHCHHHH
T ss_pred HHhhCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHH
Confidence 47899999999999999999999999998876544
No 141
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=85.41 E-value=0.76 Score=46.61 Aligned_cols=68 Identities=24% Similarity=0.634 Sum_probs=54.1
Q ss_pred hhHHHHHHhhhhcccC-CCCCChhhhhHhhhhhhhhhcccchHHHHHHHhhcccccccchhhHHHHHHH
Q psy7164 1813 SLQEMRTMLREWMCES-QPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVGKKESTVWAEAYQEM 1880 (2307)
Q Consensus 1813 ~~~~~~~~~~~~~~~~-~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ss~~~~lY~d~ 1880 (2307)
+++++++++..|.... .|.|.|.+.+..||+.+|+++.+.....+..++.+-.....+..|...|..+
T Consensus 10 ~l~dvr~~l~~Wv~~~~~P~~~DV~~l~~yL~~lv~~~~lek~~~vlk~l~rlv~~~~~~~W~~A~~~I 78 (97)
T 4fjo_A 10 EFSDVKTLLKEWITTISDPMEEDILQVVRYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFI 78 (97)
T ss_dssp SHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 5889999999998644 5778899999999999999999988888888777655544556676666444
No 142
>1unn_C POL IV, DNA polymerase IV; beta-clamp, translesion, transferase, DNA-directed D polymerase, DNA replication; HET: DNA; 1.9A {Escherichia coli} SCOP: d.240.1.1
Probab=83.99 E-value=2.2 Score=43.98 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=40.9
Q ss_pred ccccc--cccCCccCcchHHHHHHHHHHHHHhcCCCCccEEEeeeeccCcccccccc
Q psy7164 2155 CDYIT--KSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSKLEHQSKTL 2209 (2307)
Q Consensus 2155 ~dl~s--kq~~L~l~t~~~~~I~~e~~~L~r~~g~~~~~lRgIGIq~skL~~~S~~~ 2209 (2307)
.|+.+ ++.+ .++++...|.+.+..||++.. +...+|.+||.+++|.+....+
T Consensus 57 ~dF~~~trs~t--~pt~~~~~i~~~a~~Ll~~~~-~~~~vRllGV~ls~L~~~~~~Q 110 (115)
T 1unn_C 57 DDFQQTTQEHV--WPRLNKADLIATARKTWDERR-GGRGVRLVGLHVTLLDPQMERQ 110 (115)
T ss_dssp TTSCEEEEEEE--CSBCCHHHHHHHHHHHHHHHC-TTCCEEEEEEEEECCCCCCCCB
T ss_pred CCCCeEEeccc--cCcCCHHHHHHHHHHHHHhhh-cCCCEEEEEEEEeCCCCCCccc
Confidence 55544 4444 688999999999999999876 5678999999999997764333
No 143
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=83.65 E-value=0.45 Score=49.68 Aligned_cols=56 Identities=20% Similarity=0.190 Sum_probs=46.9
Q ss_pred cCCCCCCC--CCChhHHHHHHhcCCccchhhhcCCHHHHHhhh--CcchHHHHHHHhcCC
Q psy7164 1978 NIPLSDLP--GVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV--GNKNGLTLYKHCRGE 2033 (2307)
Q Consensus 1978 ~LPV~dLp--GIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~f--G~k~G~~L~~~arGi 2033 (2307)
++||.+|+ |||+...++|...|+.|+.+|+..++..|...- |...+.++...++-.
T Consensus 22 ~~~I~~L~~~GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl 81 (114)
T 1b22_A 22 PQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKL 81 (114)
T ss_dssp CCCHHHHHHTTCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHH
T ss_pred CccHHHHHhcCCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 35777777 999999999999999999999999999997654 556777887777654
No 144
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=82.40 E-value=0.71 Score=48.82 Aligned_cols=77 Identities=27% Similarity=0.635 Sum_probs=66.2
Q ss_pred hhhHHHHHHhhhhcccC-CCCCChhhhhHhhhhhhhhhcccchHHHHHHHhhcccccccchhhHHHHHHHhHHHhhcc
Q psy7164 1812 VSLQEMRTMLREWMCES-QPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAM 1888 (2307)
Q Consensus 1812 ~~~~~~~~~~~~~~~~~-~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ss~~~~lY~d~s~rv~~~l 1888 (2307)
.+++++++++.+|.... .|.|.|.+++..||..+|+++.+.....+..++.+-.....+..|..+|..+...+...+
T Consensus 36 t~l~evK~lL~~Wv~s~~~P~~~DV~~l~~yL~~lVeek~Lek~~~vlk~l~rlv~~~~~~~W~~Ay~~I~~~VQ~~m 113 (124)
T 3vu7_H 36 VEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVL 113 (124)
T ss_dssp CSHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 46899999999998643 677889999999999999999999999999988887666678899999999888776544
No 145
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=81.37 E-value=1.2 Score=42.97 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=45.8
Q ss_pred hhcCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhh--hCcchHHHHHHHhc
Q psy7164 1976 MLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNE--VGNKNGLTLYKHCR 2031 (2307)
Q Consensus 1976 L~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~--fG~k~G~~L~~~ar 2031 (2307)
+...||.+| ++..+...-|.+.||+|++||...+.+.|.+. ||++....+.+.+.
T Consensus 6 ~l~~~Ie~L-~LS~Ra~NcLkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L~ 62 (73)
T 1z3e_B 6 VLEMTIEEL-DLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLE 62 (73)
T ss_dssp HHTCBGGGS-CCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred hhcCcHHHh-CCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHHH
Confidence 344889988 79999999999999999999999999999765 88777666655543
No 146
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=74.83 E-value=1.7 Score=42.47 Aligned_cols=54 Identities=17% Similarity=0.216 Sum_probs=44.3
Q ss_pred hhcCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhh--hCcchHHHHHHHh
Q psy7164 1976 MLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNE--VGNKNGLTLYKHC 2030 (2307)
Q Consensus 1976 L~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~--fG~k~G~~L~~~a 2030 (2307)
+-..||.+| ++..+...-|.+.||+|++||...+...|.+. ||++....+...+
T Consensus 13 ~l~~~Ie~L-~LS~Ra~NcLk~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~~~L 68 (79)
T 3gfk_B 13 VLEMTIEEL-DLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKL 68 (79)
T ss_dssp GGGCBGGGS-CCBHHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHHH
T ss_pred HhcCcHHHh-CCCHHHHHHHHHhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHHHHH
Confidence 456788988 79999999999999999999999999998654 7776666554433
No 147
>1qw2_A Conserved hypothetical protein TA1206; structural genomics, beta/alpha, antiparallel beta sandwich, protein structure initiative; 1.50A {Thermoplasma acidophilum} SCOP: d.249.1.1
Probab=74.57 E-value=1.4 Score=44.83 Aligned_cols=27 Identities=11% Similarity=0.270 Sum_probs=24.6
Q ss_pred hhcccCCHHHHHcCCCCCCcHHHHHHh
Q psy7164 1669 RTMNRMGLNTREYGLGNGMFVGHALKK 1695 (2307)
Q Consensus 1669 ~~i~scNY~AR~~GVk~GM~l~~A~kL 1695 (2307)
..|.++|.+|++.||+.||+..+|+.+
T Consensus 74 a~i~~vt~~A~elGI~~GM~g~eAL~k 100 (102)
T 1qw2_A 74 AKVVEASQEAQKVGINPGDVLRNVIDK 100 (102)
T ss_dssp SBCSEECHHHHHTTCCTTCBHHHHGGG
T ss_pred ChHHHHHHHHHHhCCCCCCCHHHHHHh
Confidence 457899999999999999999999875
No 148
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=71.76 E-value=0.8 Score=53.63 Aligned_cols=54 Identities=24% Similarity=0.362 Sum_probs=0.0
Q ss_pred CCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhh--hCcchHHHHHHHhcC
Q psy7164 1979 IPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNE--VGNKNGLTLYKHCRG 2032 (2307)
Q Consensus 1979 LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~--fG~k~G~~L~~~arG 2032 (2307)
..+..|||||++++.+|...|+.++.+|...+...|.+. +|.+++++++..+..
T Consensus 15 ~~L~~IpGIGpk~a~~Ll~~gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l~~ 70 (241)
T 1vq8_Y 15 TELTDISGVGPSKAESLREAGFESVEDVRGADQSALADVSGIGNALAARIKADVGG 70 (241)
T ss_dssp --------------------------------------------------------
T ss_pred hHHhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHHHH
Confidence 467789999999999997779999999999999999887 888888888766643
No 149
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=68.54 E-value=4.7 Score=47.18 Aligned_cols=83 Identities=16% Similarity=0.150 Sum_probs=52.5
Q ss_pred ceEEEEeeeeccccccccccCCCCHHHHHHHHHH-cCCEEEEecc--CCccEEEeCCCC-hhhHhhcCC-CC--ceeccC
Q psy7164 1348 GVAIFVNGYTKHCMMLDAYYIVPSAEELKALMML-HGGIYHHYES--SRTTHIIASNLP-HTKIKKLKP-GD--KIIKPE 1420 (2307)
Q Consensus 1348 G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~-hGG~~~~~l~--~~vTHIIas~l~-~~K~~~~k~-~~--kIVkpe 1420 (2307)
.+.+-+.||... +-+..+ ...++ .|=++.+..+ .+++||||-..- .+|.-.--. +- .||+|+
T Consensus 22 ~i~ai~TGc~~~---------~~~~~D--~~~Lr~LGI~Iv~d~~~~~~~n~LiAPkilRT~KFL~sLa~~P~~~il~p~ 90 (256)
T 3t7k_A 22 DLKAVCTGCFHD---------GFNEVD--IEILNQLGIKIFDNIKETDKLNCIFAPKILRTEKFLKSLSFEPLKFALKPE 90 (256)
T ss_dssp CEEEEESSSCSS---------CCCHHH--HHHHHHTTEEECSSCCGGGCCCEEECSSCCCBHHHHHHTTSTTCCEEECTH
T ss_pred eEEEEecCCccc---------ccCHHH--HHHHHHcCeEEEecCcccCCCCEEEcCchhhHHHHHHHhccCccceEeCHH
Confidence 456667888730 133344 33344 5655666665 479999997622 333332221 12 499999
Q ss_pred hHHHHHHh---CC------CCCCcCceeee
Q psy7164 1421 WIVDSISA---GK------LLDHKKYLLYT 1441 (2307)
Q Consensus 1421 WI~DSI~~---gk------lLp~~~Y~l~~ 1441 (2307)
||+||++. |+ +++..+|.|-+
T Consensus 91 FI~~~Lk~ih~~~~~~~~~~l~~~dY~L~d 120 (256)
T 3t7k_A 91 FIIDLLKQIHSKKDKLSQININLFDYEING 120 (256)
T ss_dssp HHHHHHHHHC-------CCCCCSSTTBCTT
T ss_pred HHHHHHHHhhcCCcccccccCChhhccCCC
Confidence 99999999 88 99999998755
No 150
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=67.80 E-value=3.2 Score=41.27 Aligned_cols=54 Identities=19% Similarity=0.125 Sum_probs=44.4
Q ss_pred hcCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHh--hhCcchHHHHHHHhc
Q psy7164 1977 LNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQN--EVGNKNGLTLYKHCR 2031 (2307)
Q Consensus 1977 ~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~--~fG~k~G~~L~~~ar 2031 (2307)
-..||.+| ++..+...-|.+.||+|++||...+.+.|.+ -||.+....+.+.+.
T Consensus 10 l~~~I~~L-~LSvRa~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~ 65 (86)
T 3k4g_A 10 LLRPVDDL-ELTVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLA 65 (86)
T ss_dssp GGSBGGGG-CCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HhCcHHHh-CCCHHHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHHHHHH
Confidence 35678888 7999999999999999999999999998854 588777776665543
No 151
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=67.04 E-value=4.8 Score=39.92 Aligned_cols=50 Identities=18% Similarity=0.196 Sum_probs=41.3
Q ss_pred CCCCCCCChhHHHHHH-hcCCccchhhhcCCHHHHHhh--hCcchHHHHHHHhcC
Q psy7164 1981 LSDLPGVGHSLLFKLN-SLGAQTCGDLQNISLKRLQNE--VGNKNGLTLYKHCRG 2032 (2307)
Q Consensus 1981 V~dLpGIG~~~~~kL~-~lGI~TigDL~~lp~~~L~~~--fG~k~G~~L~~~arG 2032 (2307)
+..+||||.+++++|- .+| ++.+|...+.+.|.+. +|.+.+..++..+..
T Consensus 34 L~~IpgIG~~~A~~Ll~~fg--s~~~l~~as~~eL~~i~GIG~~~a~~I~~~l~~ 86 (91)
T 2a1j_B 34 LTTVKSVNKTDSQTLLTTFG--SLEQLIAASREDLALCPGLGPQKARRLFDVLHE 86 (91)
T ss_dssp HTTSTTCCHHHHHHHHHHHS--SHHHHHSCCHHHHHTSSSCCSHHHHHHHHHHHS
T ss_pred HHcCCCCCHHHHHHHHHHCC--CHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHhh
Confidence 4568999999999984 455 6888999999999888 888889988887754
No 152
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=66.85 E-value=2.7 Score=45.92 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=36.1
Q ss_pred CCcc-ceEEEEeeeeccccccccccCCCCHHH-------HHHHHHHcCCEEEEeccCCccEEEeCC
Q psy7164 1344 GIFQ-GVAIFVNGYTKHCMMLDAYYIVPSAEE-------LKALMMLHGGIYHHYESSRTTHIIASN 1401 (2307)
Q Consensus 1344 ~IF~-G~~iyVnGyt~~~~~~~~~~~~ps~~e-------L~~li~~hGG~~~~~l~~~vTHIIas~ 1401 (2307)
.||+ +++||++.--+.. ..+ --..+ |++-+...|+++.++++..|||||+..
T Consensus 57 kifk~~~vfYFDt~~~~~-~~~-----~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R 116 (160)
T 3qbz_A 57 KIMKRDSRIYFDITDDVE-MNT-----YNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRR 116 (160)
T ss_dssp HHHHHHCEEEECCCCSSC-CCH-----HHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESS
T ss_pred HhCccCcEEEecCCChhh-hhH-----HHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecC
Confidence 5998 8999997654310 000 00112 445566799999999999999999986
No 153
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=66.46 E-value=3.8 Score=50.28 Aligned_cols=55 Identities=27% Similarity=0.349 Sum_probs=44.3
Q ss_pred hcCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhCc--chHHHHHHHhc
Q psy7164 1977 LNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGN--KNGLTLYKHCR 2031 (2307)
Q Consensus 1977 ~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG~--k~G~~L~~~ar 2031 (2307)
...+|.+||||+..+.++|++.|++|+.++...++..|.+..|- ....++.+.++
T Consensus 33 ~~~~l~~l~Gi~~~~~~kL~~ag~~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~~ 89 (349)
T 1pzn_A 33 IIRSIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAAR 89 (349)
T ss_dssp --CCSSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred ccccHHHcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhhcCCCHHHHHHHHHHHh
Confidence 34589999999999999999999999999999999999988773 23445544443
No 154
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=64.81 E-value=4.7 Score=43.84 Aligned_cols=88 Identities=14% Similarity=0.258 Sum_probs=61.1
Q ss_pred ccceEEEEeeeeccccccccccCCCCHHHHHHHHHHcCCEEEE-eccCCccEEEeCCCChhhH--hhcC---CCCceecc
Q psy7164 1346 FQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHH-YESSRTTHIIASNLPHTKI--KKLK---PGDKIIKP 1419 (2307)
Q Consensus 1346 F~G~~iyVnGyt~~~~~~~~~~~~ps~~eL~~li~~hGG~~~~-~l~~~vTHIIas~l~~~K~--~~~k---~~~kIVkp 1419 (2307)
..|+++++.-.. ...+.+..++.+-+---|+.-.+ .+.-.+||.+|..|+.+.. ..++ .++.||+|
T Consensus 162 msgitvclgpld--------plkeisdlqisqclshigarplqrhvaidtthfvcndldneesneelirakhnnipivrp 233 (290)
T 4gns_A 162 MSGITVCLGPLD--------PLKEISDLQISQCLSHIGARPLQRHVAIDTTHFVCNDLDNEESNEELIRAKHNNIPIVRP 233 (290)
T ss_dssp CTTCCEEECCCC--------GGGTCCHHHHHHHHHHTTCCCCBSSCCTTCCEEECSCCTTCTTCHHHHHHHHTTCCEECT
T ss_pred ccCceEEecCCC--------hhhhhhhccHHHHHHHhCCchhhheeeeecceeeecCCCcccchHHHHhhhccCCCccCH
Confidence 457777763332 12235788888877777877544 3445689999998875422 2222 27999999
Q ss_pred ChHHHHHHhCCCCCCcCceeee
Q psy7164 1420 EWIVDSISAGKLLDHKKYLLYT 1441 (2307)
Q Consensus 1420 eWI~DSI~~gklLp~~~Y~l~~ 1441 (2307)
+|+-.|--..+++--+-|.|..
T Consensus 234 ewvracevekrivgvrgfylda 255 (290)
T 4gns_A 234 EWVRACEVEKRIVGVRGFYLDA 255 (290)
T ss_dssp HHHHHHHHTTSCCCSGGGBTTS
T ss_pred HHHHHHhhhheeeeeeeEEEcc
Confidence 9999999999999888876643
No 155
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=64.76 E-value=5.8 Score=39.19 Aligned_cols=44 Identities=20% Similarity=0.247 Sum_probs=39.4
Q ss_pred hcCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhCc
Q psy7164 1977 LNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGN 2020 (2307)
Q Consensus 1977 ~~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG~ 2020 (2307)
..+.++..||+..-+.+.|++.||+|+.|+...+..+|.+..|-
T Consensus 2 ~~l~~~~~p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~l 45 (83)
T 2kz3_A 2 GVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGL 45 (83)
T ss_dssp CCCCTTSSTTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTC
T ss_pred CccccccCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCC
Confidence 34566767999999999999999999999999999999999884
No 156
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=63.09 E-value=3.2 Score=42.23 Aligned_cols=53 Identities=19% Similarity=0.127 Sum_probs=44.7
Q ss_pred cCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhh--hCcchHHHHHHHhc
Q psy7164 1978 NIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNE--VGNKNGLTLYKHCR 2031 (2307)
Q Consensus 1978 ~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~--fG~k~G~~L~~~ar 2031 (2307)
..||.+| ++..+...-|.+.||+|++||...+...|.+. ||.+....+...+.
T Consensus 23 ~~~Ie~L-~LSvRs~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~ 77 (98)
T 1coo_A 23 LRPVDDL-ELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLA 77 (98)
T ss_dssp HSBGGGG-TCCTTTHHHHHTTTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred cCcHHHh-CCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3788888 69999999999999999999999999999654 89877776666553
No 157
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=63.06 E-value=2.5 Score=56.51 Aligned_cols=52 Identities=23% Similarity=0.386 Sum_probs=46.9
Q ss_pred CCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhCcchHHHHHHHhc
Q psy7164 1979 IPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCR 2031 (2307)
Q Consensus 1979 LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG~k~G~~L~~~ar 2031 (2307)
+|+..|||||+..+++|...|++|+.||+ .+...|.+.+|++.|.+++..+.
T Consensus 657 ~~L~qlp~i~~~rar~L~~~g~~s~~~l~-~~~~~l~~~l~~~~~~~i~~~~~ 708 (715)
T 2va8_A 657 LELVQISGVGRKRARLLYNNGIKELGDVV-MNPDKVKNLLGQKLGEKVVQEAA 708 (715)
T ss_dssp HHHHTSTTCCHHHHHHHHHTTCCSHHHHH-HCHHHHHHHHCHHHHHHHHHHHH
T ss_pred cchhhCCCCCHHHHHHHHHcCCCCHHHHh-CCHHHHHHHhChhHHHHHHHHHH
Confidence 45668999999999999999999999999 99999999999889999887553
No 158
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=62.33 E-value=4.1 Score=49.24 Aligned_cols=57 Identities=14% Similarity=0.102 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCCEEEEeccCCccEEEeCCCChhh-----HhhcCCCCceeccChHHHHHHh
Q psy7164 1372 AEELKALMMLHGGIYHHYESSRTTHIIASNLPHTK-----IKKLKPGDKIIKPEWIVDSISA 1428 (2307)
Q Consensus 1372 ~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~K-----~~~~k~~~kIVkpeWI~DSI~~ 1428 (2307)
..+|++.+.+.||++..|....|||+|.......| ..-+-.+..||+|+|+....+.
T Consensus 126 ~~~L~~~L~~LGik~v~~~~detTHlVm~krnT~KvTvK~L~ALI~gkPIV~~~Fl~al~~~ 187 (325)
T 3huf_A 126 LSQWASNLNLLGIPTGLRDSDATTHFVMNRQAGSSITVGTMYAFLKKTVIIDDSYLQYLSTV 187 (325)
T ss_dssp HHHHHHHHHTTTCCEESSCCTTCCEEECCCCCSSCCCHHHHHHHHTTCEEECHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCEEEEccCCCEEEEEEeccccccchHHHHHHHHCCCcEecHHHHHHHHHh
Confidence 44699999999999994446779999997544444 2222237899999999996543
No 159
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=62.30 E-value=4.4 Score=48.74 Aligned_cols=54 Identities=28% Similarity=0.300 Sum_probs=43.4
Q ss_pred CCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhCc--chHHHHHHHhcC
Q psy7164 1979 IPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGN--KNGLTLYKHCRG 2032 (2307)
Q Consensus 1979 LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG~--k~G~~L~~~arG 2032 (2307)
.+|.+|+||++.+.++|++.||.|+.||+..++..|....|- +...++...++-
T Consensus 3 ~~~~~l~gi~~~~~~kL~~~gi~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a~~ 58 (322)
T 2i1q_A 3 DNLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARD 58 (322)
T ss_dssp --CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred ccHhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999999887663 334555555554
No 160
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=62.30 E-value=4.9 Score=39.62 Aligned_cols=50 Identities=18% Similarity=0.196 Sum_probs=41.6
Q ss_pred CCCCCCCChhHHHHHHh-cCCccchhhhcCCHHHHHhh--hCcchHHHHHHHhcC
Q psy7164 1981 LSDLPGVGHSLLFKLNS-LGAQTCGDLQNISLKRLQNE--VGNKNGLTLYKHCRG 2032 (2307)
Q Consensus 1981 V~dLpGIG~~~~~kL~~-lGI~TigDL~~lp~~~L~~~--fG~k~G~~L~~~arG 2032 (2307)
+..+||||.+++++|-. +| ++.+|...+.+.|... +|++.+..++..+..
T Consensus 21 L~~IpgIG~~~A~~Ll~~fg--sl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~ 73 (89)
T 1z00_A 21 LTTVKSVNKTDSQTLLTTFG--SLEQLIAASREDLALCPGLGPQKARRLFDVLHE 73 (89)
T ss_dssp HTTSSSCCHHHHHHHHHHTC--BHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred HHcCCCCCHHHHHHHHHHCC--CHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 45689999999999854 54 6888999999999887 888888888887764
No 161
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=61.45 E-value=3.7 Score=40.86 Aligned_cols=30 Identities=27% Similarity=0.341 Sum_probs=26.7
Q ss_pred cCCCCCCCCCChhHHHHHHhcCCccchhhh
Q psy7164 1978 NIPLSDLPGVGHSLLFKLNSLGAQTCGDLQ 2007 (2307)
Q Consensus 1978 ~LPV~dLpGIG~~~~~kL~~lGI~TigDL~ 2007 (2307)
+=+|.+|||||+.++++|.+-|+.+..+|.
T Consensus 17 eK~V~evpGIG~~~~~~L~~~Gf~kAy~lL 46 (89)
T 1ci4_A 17 EKPVGSLAGIGEVLGKKLEERGFDKAYVVL 46 (89)
T ss_dssp TCCGGGSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred CCCcccCCCcCHHHHHHHHHcCccHHHHHH
Confidence 458999999999999999999999877765
No 162
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=61.12 E-value=4.1 Score=39.23 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=39.7
Q ss_pred CCCCCCCCChhHHHHHH-hcCCccchhhhcCCHHHHHhh--hCcchHHHHHHHh
Q psy7164 1980 PLSDLPGVGHSLLFKLN-SLGAQTCGDLQNISLKRLQNE--VGNKNGLTLYKHC 2030 (2307)
Q Consensus 1980 PV~dLpGIG~~~~~kL~-~lGI~TigDL~~lp~~~L~~~--fG~k~G~~L~~~a 2030 (2307)
.+..+||||++++++|- .+| ++.+|...+.+.|.+. +|++.+..++...
T Consensus 25 ~L~~I~gIG~~~A~~Ll~~fg--sl~~l~~a~~eeL~~i~GIG~~~a~~I~~~~ 76 (78)
T 1kft_A 25 SLETIEGVGPKRRQMLLKYMG--GLQGLRNASVEEIAKVPGISQGLAEKIFWSL 76 (78)
T ss_dssp GGGGCTTCSSSHHHHHHHHHS--CHHHHHHCCHHHHTTSSSTTSHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHcC--CHHHHHHCCHHHHHHCCCCCHHHHHHHHHHH
Confidence 46679999999999985 455 6888999999999887 7888888776654
No 163
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=60.14 E-value=9.5 Score=41.41 Aligned_cols=65 Identities=14% Similarity=0.068 Sum_probs=38.9
Q ss_pred CCc-cceEEEEeeeeccccccccccCCC--CHHHHHHHHHHcCCEEEEeccCCccEEEeCCCChhhHhhc
Q psy7164 1344 GIF-QGVAIFVNGYTKHCMMLDAYYIVP--SAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKL 1410 (2307)
Q Consensus 1344 ~IF-~G~~iyVnGyt~~~~~~~~~~~~p--s~~eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~K~~~~ 1410 (2307)
.|. +..+||++.--.. .+++..+-.. -.+-|++-+...||++.++++..|||||+.. +..+...+
T Consensus 19 kIM~r~s~iYFdt~~~~-~~~~~~~~~l~k~~~llkk~f~~LGa~I~~FFd~~VTiIITrR-~~~~~~~y 86 (151)
T 3oq0_A 19 SHMKRDSRIYFDITDDV-EMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRR-SVENIYLL 86 (151)
T ss_dssp --CCCCCEEEECCCCSS-CCCHHHHHHHHHHHHHHHHHHHHHTCEEESSCCTTCCEEEESS-CGGGGGGS
T ss_pred HHhccCCEEEEeCCCcc-hhhHHHHHHHHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCC-cCcccccC
Confidence 577 8999999744210 0111000000 0123667778899999999999999999987 43344333
No 164
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=58.95 E-value=6.7 Score=47.71 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=52.1
Q ss_pred cCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhCc--chHHHHHHHhcCCCCCccc
Q psy7164 1978 NIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGN--KNGLTLYKHCRGEDDKELT 2039 (2307)
Q Consensus 1978 ~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG~--k~G~~L~~~arGiD~~~V~ 2039 (2307)
..|+..|||||....++|...||.|+.||..++...+...+|- ..|..++..|+....-.+.
T Consensus 156 ~~pL~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~~P~l~v~ 219 (328)
T 3im1_A 156 DNPLRQIPHFNNKILEKCKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELT 219 (328)
T ss_dssp SCGGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEE
T ss_pred CCceeCCCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHhCCCEEEE
Confidence 4588999999999999999999999999999999999887663 4678888888877655443
No 165
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=56.73 E-value=3.2 Score=55.37 Aligned_cols=52 Identities=13% Similarity=0.204 Sum_probs=48.2
Q ss_pred CCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhCcchHHHHHHHhc
Q psy7164 1979 IPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCR 2031 (2307)
Q Consensus 1979 LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG~k~G~~L~~~ar 2031 (2307)
+|+..|||||+..+++|...|++|+.||.+++ ..|.+.+|++.|..++..++
T Consensus 632 ~~L~qlp~v~~~~ar~l~~~g~~s~~~l~~~~-~~l~~ll~~~~~~~i~~~~~ 683 (702)
T 2p6r_A 632 LELVRIRHIGRVRARKLYNAGIRNAEDIVRHR-EKVASLIGRGIAERVVEGIS 683 (702)
T ss_dssp HHHHTSTTCCHHHHHHHHTTTCCSHHHHHHTH-HHHHHHHCHHHHHHHHHHHH
T ss_pred HhhhcCCCCCHHHHHHHHHcCCCCHHHHHhhh-HHHHHHhChhHHHHHHHhcC
Confidence 45668999999999999999999999999999 99999999999999999888
No 166
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=56.53 E-value=14 Score=41.85 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHhhhhcccCCCCCeEEEEEEcc--C--CeEEEEeCCCCccccc
Q psy7164 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQE--T--NTISVWNNGKGIPVVE 132 (2307)
Q Consensus 84 L~~i~~EILdNavDe~~r~g~~~~I~V~i~~d--~--gsIsV~DnGrGIPvd~ 132 (2307)
+..++ +.+.||++++........|.|.|..+ + -.|.|.|+|.|||.+.
T Consensus 110 lgnLi-~na~~Ai~~~~~~~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~ 161 (192)
T 1ixm_A 110 LAKLM-RKLFHLFDQAVSRESENHLTVSLQTDHPDRQLILYLDFHGAFADPSA 161 (192)
T ss_dssp HHHHH-HHHHHHHHHHBCTTSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGG
T ss_pred HHHHH-HHHHHHHHhhhccCCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHH
Confidence 44444 44455555432234466899988764 3 3899999999999874
No 167
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=55.16 E-value=14 Score=45.67 Aligned_cols=89 Identities=15% Similarity=0.155 Sum_probs=54.8
Q ss_pred CcCChhHHHHHHHHHHhhhc-CCCCCceEEeeee--ccc--cccccCCccCcchHHHHHHHHHHHHHhcCC-CCcc-EEE
Q psy7164 2122 PIYERPLIITYFLLLVRSAE-APREASKFLGHGV--CDY--ITKSSSLPMYISQASQILKEVLFIVNKLKV-DPVE-LRG 2194 (2307)
Q Consensus 2122 pt~~~~~L~~aA~~lL~~i~-~~~~~yr~~Gv~l--~dl--~skq~~L~l~t~~~~~I~~e~~~L~r~~g~-~~~~-lRg 2194 (2307)
+..+...+...+..+.+.+. +.+..-+.+.+.+ .++ .+++.+++.+ ++...|.+.+..|++++.. +... +|+
T Consensus 255 ~~~~~~~l~~~l~~l~~~l~~rLr~~~~~v~l~i~~~~~~~~t~s~~l~~p-~d~~~i~~~a~~ll~~~~~~~~~~~vr~ 333 (362)
T 4f4y_A 255 NTRDVKVILPYLKKAINEAYNKVNGIPMRITVIAIMEDLDILSKGKKFKHG-ISIDNAYKVAEDLLRELLVRDKRRNVRR 333 (362)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHCSSEEEEEEEEEEETTSCEEEEEEECSSC-CCHHHHHHHHHHHHHHHTTSSCSCCEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCCcEEEEEEECCCC-CCHHHHHHHHHHHHHHHHhhcCCccEEE
Confidence 44455666555555555431 1111233333332 333 3467778888 9999999999999999985 4566 999
Q ss_pred eeeeccCcccccccccc
Q psy7164 2195 IGIQVSKLEHQSKTLAT 2211 (2307)
Q Consensus 2195 IGIq~skL~~~S~~~tT 2211 (2307)
+||++++|.+.+.++.+
T Consensus 334 lGV~~~~L~~~~~~q~~ 350 (362)
T 4f4y_A 334 IGVKLDNIIINKTNLSD 350 (362)
T ss_dssp EEEEEEEEEC-------
T ss_pred EEEEEeccccCCccccc
Confidence 99999999887665554
No 168
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=55.11 E-value=7.1 Score=45.11 Aligned_cols=50 Identities=20% Similarity=0.344 Sum_probs=42.8
Q ss_pred CCCCCCCCCChhHHHHHH-hcCCccchhhhcCCHHHHHhhhCc-chHHHHHHHh
Q psy7164 1979 IPLSDLPGVGHSLLFKLN-SLGAQTCGDLQNISLKRLQNEVGN-KNGLTLYKHC 2030 (2307)
Q Consensus 1979 LPV~dLpGIG~~~~~kL~-~lGI~TigDL~~lp~~~L~~~fG~-k~G~~L~~~a 2030 (2307)
.++..+||||++++++|. .+| ++..|.+.+.++|.+.+|+ +.+..++++.
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~Fg--Sl~~i~~As~EeL~~VIG~~~~A~~I~~~f 219 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEHFG--SLENIRSASLEEIARVIGSTEIARRVLDIL 219 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHC--SHHHHHTSCHHHHHHHHTCHHHHHHHHHHC
T ss_pred ccccCCCCcCHHHHHHHHHHcC--CHHHHHhCCHHHHHHHhChHHHHHHHHHHh
Confidence 356789999999999985 455 7888999999999999999 9999998764
No 169
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=54.74 E-value=22 Score=45.92 Aligned_cols=75 Identities=16% Similarity=0.267 Sum_probs=53.6
Q ss_pred HHHHHHHhhhcCCCCCceEEeeee--ccc--cccccCCccCcchHHHHHHHHHHHHHhcC----CCCccEEEeeeeccCc
Q psy7164 2131 TYFLLLVRSAEAPREASKFLGHGV--CDY--ITKSSSLPMYISQASQILKEVLFIVNKLK----VDPVELRGIGIQVSKL 2202 (2307)
Q Consensus 2131 ~aA~~lL~~i~~~~~~yr~~Gv~l--~dl--~skq~~L~l~t~~~~~I~~e~~~L~r~~g----~~~~~lRgIGIq~skL 2202 (2307)
+.+..+..++-..+..-+.+.+.+ .++ .+++.+++.++++...|++.+..|+++.. ..+..+|++||.+++|
T Consensus 426 ~La~~l~~rLr~~~~~~~~vtlklk~~~f~~~tr~~tl~~~t~~~~~i~~~a~~Ll~~~~~~~~~~~~~iRllGV~~s~l 505 (517)
T 3pzp_A 426 ELCSELAQDLQKERLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSF 505 (517)
T ss_dssp HHHHHHHHHHHTTTCCBSCEEEEEEETTSCEEEECCCCSSCBCSHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEECCC
T ss_pred HHHHHHHHHHHHcCCceeEEEEEEEecCCceeeEEEeCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEecCC
Confidence 344444445555555555554444 344 45788899999999999999999998763 2356799999999999
Q ss_pred ccc
Q psy7164 2203 EHQ 2205 (2307)
Q Consensus 2203 ~~~ 2205 (2307)
.+.
T Consensus 506 ~~~ 508 (517)
T 3pzp_A 506 PNE 508 (517)
T ss_dssp CCC
T ss_pred cCh
Confidence 764
No 170
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=54.07 E-value=8.5 Score=47.03 Aligned_cols=58 Identities=10% Similarity=0.157 Sum_probs=48.3
Q ss_pred cCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhC--cchHHHHHHHhcCCCC
Q psy7164 1978 NIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVG--NKNGLTLYKHCRGEDD 2035 (2307)
Q Consensus 1978 ~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG--~k~G~~L~~~arGiD~ 2035 (2307)
..|+..|||||....++|...|+.++.||..++...+...+| ...+..+++.++-...
T Consensus 160 ~~pL~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~~P~ 219 (339)
T 2q0z_X 160 DSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPN 219 (339)
T ss_dssp SCGGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTTSCC
T ss_pred CCceecCCCCCHHHHHHHHhcCCCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 458899999999999999999999999999999999888887 3346677777766543
No 171
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=52.57 E-value=13 Score=39.74 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCEEEEeccCCccEEEeCCCChhhHhh
Q psy7164 1374 ELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKK 1409 (2307)
Q Consensus 1374 eL~~li~~hGG~~~~~l~~~vTHIIas~l~~~K~~~ 1409 (2307)
-|++-+...||++.++++..|||||+.. +..+...
T Consensus 34 llk~~f~~LGa~I~~FFd~~VTiiITrR-~~~~~~~ 68 (134)
T 3oq4_A 34 LLKRGFLTLGAQITQFFDTTVTIVITRR-SVENIYL 68 (134)
T ss_dssp HHHHHHHHTTCEEESSCCTTCCEEEESS-CGGGGGG
T ss_pred HHHHHHHHcCCEEeeecCCceEEEEeCC-cCccccc
Confidence 3667777899999999999999999987 4343333
No 172
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=49.38 E-value=3.5 Score=49.82 Aligned_cols=54 Identities=24% Similarity=0.359 Sum_probs=0.0
Q ss_pred CCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhCc--chHHHHHHHhcC
Q psy7164 1979 IPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGN--KNGLTLYKHCRG 2032 (2307)
Q Consensus 1979 LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG~--k~G~~L~~~arG 2032 (2307)
.||.+||||+..+.++|++.|+.|+.++...++..|.+..|- ....++.+.++-
T Consensus 12 ~~~~~l~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~ 67 (324)
T 2z43_A 12 KTINDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARD 67 (324)
T ss_dssp --------------------------------------------------------
T ss_pred ccHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHhhCCCHHHHHHHHHHHHh
Confidence 489999999999999999999999999999999888877662 234444444443
No 173
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=48.52 E-value=9.3 Score=51.07 Aligned_cols=51 Identities=24% Similarity=0.257 Sum_probs=42.2
Q ss_pred cCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhCcchHHHHHHHh
Q psy7164 1978 NIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHC 2030 (2307)
Q Consensus 1978 ~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG~k~G~~L~~~a 2030 (2307)
.+|+..|||||+..+++|...|++|+.||+.++.+.|... ++.|.++++.+
T Consensus 645 ~~~L~qlp~v~~~rar~L~~~G~~s~~dl~~~~~~~l~~~--~~~~~~i~~~~ 695 (720)
T 2zj8_A 645 LIPLMQLPLVGRRRARALYNSGFRSIEDISQARPEELLKI--EGIGVKTVEAI 695 (720)
T ss_dssp GGGGTTSTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHTS--TTCCHHHHHHH
T ss_pred chhhhhCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHh--HhHHHHHHHHH
Confidence 4678899999999999999999999999999999999877 23444444433
No 174
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=48.29 E-value=26 Score=42.88 Aligned_cols=89 Identities=15% Similarity=0.145 Sum_probs=56.6
Q ss_pred CcCChhHHHHHHHHHHhhhcCC-CCCceEEeeee--ccc--cccccCCccCcchHHHHHHHHHHHHHhcCCCCc-c-EEE
Q psy7164 2122 PIYERPLIITYFLLLVRSAEAP-REASKFLGHGV--CDY--ITKSSSLPMYISQASQILKEVLFIVNKLKVDPV-E-LRG 2194 (2307)
Q Consensus 2122 pt~~~~~L~~aA~~lL~~i~~~-~~~yr~~Gv~l--~dl--~skq~~L~l~t~~~~~I~~e~~~L~r~~g~~~~-~-lRg 2194 (2307)
+..+...+...+..+.+.+... +..-+.+.+.+ .++ .+++.+++.++++...|++ +..+++++..+.. . +|+
T Consensus 255 ~~~~~~~l~~~l~~l~~~l~~rL~~~~~~v~l~~~~~~~~~~~~~~~l~~pt~~~~~i~~-~~~ll~~~~~~~~~~~vr~ 333 (354)
T 3bq0_A 255 NTRDVKVILPYLKKAINEAYNKVNGIPMRITVIAIMEDLDILSKGKKFKHGISIDNAYKV-AEDLLRELLVRDKRRNVRR 333 (354)
T ss_dssp EECCHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEETTSCEEEEEEECSSCCCHHHHHHH-HHHHHHHHTTSCSSCCEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhCCEEEEEEEeCCCCcceEEEECCCccCCHHHHHH-HHHHHHHHhccCCCCceEE
Confidence 4456666666666666654211 11223333333 333 3466778888999999999 9999999876545 7 999
Q ss_pred eeeeccCcccccccccc
Q psy7164 2195 IGIQVSKLEHQSKTLAT 2211 (2307)
Q Consensus 2195 IGIq~skL~~~S~~~tT 2211 (2307)
+||.+++|.+....+.+
T Consensus 334 lgv~~~~l~~~~~~q~~ 350 (354)
T 3bq0_A 334 IGVKLDNIIINKTNLSD 350 (354)
T ss_dssp EEEEEEEEECC------
T ss_pred EEEEEecCCCCCccccc
Confidence 99999999887544443
No 175
>3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli}
Probab=47.53 E-value=21 Score=44.40 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=29.2
Q ss_pred EEEeCCeEEEEeChHHHHHHHHHhcCCCccCcEEeccc
Q psy7164 596 KATKAREELSFYSLPEFEEWKEETTNWHTYKIKYYKVV 633 (2307)
Q Consensus 596 kv~~gk~~~~fys~~e~~~~~~~~~~~~~~~ikryKGL 633 (2307)
.+..+.....+.+-.|.-+|.-+.+ .+++.|||||||
T Consensus 322 ~i~~~~~~~~v~~~~~~~~~l~~~~-~kG~~IQRYKGL 358 (420)
T 3nuh_B 322 FIERGERRQPVASFEQALDWLVKES-RRGLSIQRYKGL 358 (420)
T ss_dssp EEEESSCEEEESSHHHHHHHHHHHH-TTTCEEEECSCG
T ss_pred EEEeCCcceecCCHHHHHHHHHHHh-hccceeeeeccC
Confidence 4456666667889889989987754 478999999999
No 176
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=45.46 E-value=21 Score=43.76 Aligned_cols=81 Identities=17% Similarity=0.245 Sum_probs=54.0
Q ss_pred CcCChhHHHHHHHHHHhh----hcCCCCCceEEeeee--ccc--cccccCCccCcchHHHHHHHHHHHHHhcCC-CCccE
Q psy7164 2122 PIYERPLIITYFLLLVRS----AEAPREASKFLGHGV--CDY--ITKSSSLPMYISQASQILKEVLFIVNKLKV-DPVEL 2192 (2307)
Q Consensus 2122 pt~~~~~L~~aA~~lL~~----i~~~~~~yr~~Gv~l--~dl--~skq~~L~l~t~~~~~I~~e~~~L~r~~g~-~~~~l 2192 (2307)
+..+...+...+..+.++ +-.. .-+.+.+.+ .++ .+++.+++.++++...|++ +..+++++.. +...+
T Consensus 254 ~~~~~~~l~~~l~~l~~~l~~rL~~~--~~~~v~l~l~~~~~~~~~~~~~l~~pt~~~~~l~~-a~~ll~~~~~~~~~~v 330 (352)
T 1jx4_A 254 NSRNLEEIKPYLFRAIEESYYKLDKR--IPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSE-SVKLLQKILEEDERKI 330 (352)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHTTC--CEEEEEEEEEETTSCEEEEEEECSSCCCHHHHHHH-HHHHHHHHHHHCCSCE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHh--cCCEEEEEEEECCCCcceeEEecCCCCCCHHHHHH-HHHHHHHHHhcCCCCE
Confidence 344555555555554443 3333 334444443 333 3467778889999999999 9999999865 46789
Q ss_pred EEeeeeccCcccc
Q psy7164 2193 RGIGIQVSKLEHQ 2205 (2307)
Q Consensus 2193 RgIGIq~skL~~~ 2205 (2307)
|++||.+++|.+.
T Consensus 331 r~lgv~~~~l~~~ 343 (352)
T 1jx4_A 331 RRIGVRFSKFIEA 343 (352)
T ss_dssp EEEEEEEEEEC--
T ss_pred EEEEEEEeCCCCc
Confidence 9999999999876
No 177
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=43.06 E-value=12 Score=35.22 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=40.1
Q ss_pred CCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhh--hCcchHHHHHHHhcC
Q psy7164 1981 LSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNE--VGNKNGLTLYKHCRG 2032 (2307)
Q Consensus 1981 V~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~--fG~k~G~~L~~~arG 2032 (2307)
+..+||||..++.+|-.. +.++.+|...+.+.|... +|++.+..++..+..
T Consensus 16 L~~i~giG~~~a~~Ll~~-fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~~ 68 (75)
T 1x2i_A 16 VEGLPHVSATLARRLLKH-FGSVERVFTASVAELMKVEGIGEKIAKEIRRVITA 68 (75)
T ss_dssp HTTSTTCCHHHHHHHHHH-HCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HcCCCCCCHHHHHHHHHH-cCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHhC
Confidence 467899999999998552 345788888899999877 788888888776654
No 178
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=42.99 E-value=56 Score=41.59 Aligned_cols=88 Identities=8% Similarity=-0.027 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHh-------hhhHHHhhcc--cCCCchHHHHHHHhhccccccccc---cCCCCCCChhhHHHH
Q psy7164 788 IAPKSYKIDDDSEEEEIEE-------VFHDNELAKP--QKTGPQLERQERQAAEGEDDEAGS---QTQEEEDPDKDYDYL 855 (2307)
Q Consensus 788 IL~eF~~~Rl~~y~rr~e~-------l~ni~~li~~--~~~d~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~q~dyI 855 (2307)
++..=.+|+++-.++|+.. +.+++++|++ .+.+...+...........+.|.+ .+.-..++.-..+.|
T Consensus 342 ~~~rR~~~~L~k~~~r~hilegl~~a~~~iD~vI~iIr~s~~~~~a~~~L~~~f~lse~Qa~aIl~mrL~rLt~le~~kl 421 (470)
T 3ilw_A 342 VIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLDIDEIQAQAILDMQLRRLAALERQRI 421 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCSSHHHHHHHHHHHHTCCHHHHHHHHTCBGGGGSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCHHHHHHHHHhHHHHhhhHHHHHH
Confidence 3333344444444555333 6678999887 555555665555554444433311 121122233223222
Q ss_pred HcCccccccHHHHHHHHHHHHHHHHHHHH
Q psy7164 856 LGMTFWSLTMERKNELLKKRDDKMTELNI 884 (2307)
Q Consensus 856 L~M~L~rLT~ee~~kL~~E~~el~~ei~~ 884 (2307)
..|.++|++++++++.-++.
T Consensus 422 ---------~~E~~~l~~~i~~l~~iL~~ 441 (470)
T 3ilw_A 422 ---------IDDLAKIEAEIADLEDILAK 441 (470)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHHHHHHHhCC
Confidence 34677777777777665544
No 179
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=41.20 E-value=15 Score=35.01 Aligned_cols=43 Identities=23% Similarity=0.274 Sum_probs=28.7
Q ss_pred CCCCCCCChhHHHHHHh-cCCccchhhhcCCHHHHHhhhCcchHHHHHHH
Q psy7164 1981 LSDLPGVGHSLLFKLNS-LGAQTCGDLQNISLKRLQNEVGNKNGLTLYKH 2029 (2307)
Q Consensus 1981 V~dLpGIG~~~~~kL~~-lGI~TigDL~~lp~~~L~~~fG~k~G~~L~~~ 2029 (2307)
+..+||||+++++++-. .+..++.||..++ -+|++...+++.+
T Consensus 29 L~~ipGIG~~~A~~Il~~r~~~s~~eL~~v~------Gig~k~~~~i~~~ 72 (75)
T 2duy_A 29 LMALPGIGPVLARRIVEGRPYARVEDLLKVK------GIGPATLERLRPY 72 (75)
T ss_dssp HTTSTTCCHHHHHHHHHTCCCSSGGGGGGST------TCCHHHHHHHGGG
T ss_pred HHhCCCCCHHHHHHHHHHcccCCHHHHHhCC------CCCHHHHHHHHHh
Confidence 35579999999999854 4666666666532 2565666666544
No 180
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=38.43 E-value=30 Score=43.10 Aligned_cols=103 Identities=17% Similarity=0.092 Sum_probs=55.4
Q ss_pred CCCCCCChhHHHHHHhcCCccchhhhc-----CCHHHH---------HhhhCc----chHHHHHHHhcCCCCCcc-c---
Q psy7164 1982 SDLPGVGHSLLFKLNSLGAQTCGDLQN-----ISLKRL---------QNEVGN----KNGLTLYKHCRGEDDKEL-T--- 2039 (2307)
Q Consensus 1982 ~dLpGIG~~~~~kL~~lGI~TigDL~~-----lp~~~L---------~~~fG~----k~G~~L~~~arGiD~~~V-~--- 2039 (2307)
..+||||++++++|...||+|+.||.. +....+ ..++-- ..+..+.+.++.+++... .
T Consensus 124 ~~I~GvGpk~a~~ly~~Gi~tledL~~~~g~kl~~~q~~Gl~~~~d~~~ripr~ea~~ia~~i~~~l~~~~~~~~v~i~G 203 (381)
T 1jms_A 124 TSVFGVGLKTAEKWFRMGFRTLSKIQSDKSLRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTG 203 (381)
T ss_dssp HTSTTCCHHHHHHHHHTTCCSHHHHHHCSSCCCCHHHHHHHHTHHHHHSCBCHHHHHHHHHHHHHHHHHHCTTCEEEECH
T ss_pred HccCCCCHHHHHHHHHcCCCcHHHHHhCcccchHHHHHHHHHHHHHhcCCEEHHHHHHHHHHHHHHHHhcCCCcEEEEcc
Confidence 458999999999997779999999983 222111 111110 133344445554433221 1
Q ss_pred cccCCcccEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhccccce
Q psy7164 2040 FEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGK 2086 (2307)
Q Consensus 2040 ~~~~rKSIs~e~nfg~r~~~~eel~~~L~~La~eL~~RLr~~~~~~r 2086 (2307)
..+-.|..+-++-+-+.-.+...... ..|+..|..+|.+.+....
T Consensus 204 SyRRgket~gDvDilit~~~~~~~~~--~~ll~~vv~~L~~~~~i~~ 248 (381)
T 1jms_A 204 GFRRGKMTGHDVDFLITSPEATEDEE--QQLLHKVTDFWKQQGLLLY 248 (381)
T ss_dssp HHHTTCSCBSSEEEEEECTTCCHHHH--HHHHHHHHHHHHHTTCEEE
T ss_pred ccccCCCCcCCeEEEEeCCCccccch--hhHHHHHHHHHHhCCCccc
Confidence 22334444545444322122111111 3477778888988877643
No 181
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=37.56 E-value=15 Score=49.75 Aligned_cols=30 Identities=33% Similarity=0.374 Sum_probs=28.2
Q ss_pred CCCCCCCCCChhHHHHHHhcCCccchhhhc
Q psy7164 1979 IPLSDLPGVGHSLLFKLNSLGAQTCGDLQN 2008 (2307)
Q Consensus 1979 LPV~dLpGIG~~~~~kL~~lGI~TigDL~~ 2008 (2307)
.||..|+|||++.+++|+++||.|++||..
T Consensus 115 ~~~~~l~gvg~~~~~~l~~lgi~~~~dll~ 144 (780)
T 1gm5_A 115 TDIQYAKGVGPNRKKKLKKLGIETLRDLLE 144 (780)
T ss_dssp CCSSSSSSCCHHHHHHHHTTTCCSSGGGTS
T ss_pred CCchhcCCCCHHHHHHHHHCCCCcHHHHHh
Confidence 489999999999999999999999999974
No 182
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=36.27 E-value=15 Score=45.95 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=44.9
Q ss_pred HhhcCCCCCCCC--CChhHHHHHHhcCCccchhhhcCCHHHHHhhhCcc--hHHHHHHHhc
Q psy7164 1975 FMLNIPLSDLPG--VGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNK--NGLTLYKHCR 2031 (2307)
Q Consensus 1975 fL~~LPV~dLpG--IG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG~k--~G~~L~~~ar 2031 (2307)
.-..+||.+|++ |+..+.++|.+.|+.|+.+|+..++..|.+..|-. ...++...++
T Consensus 77 ~~~~~~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~~~~~~L~~~~gis~~~~~~i~~~a~ 137 (400)
T 3lda_A 77 LGSFVPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAA 137 (400)
T ss_dssp -CCSCBGGGGCCTTCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred ccCccCHHHHHhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 334578888886 88999999999999999999999999999988842 2444444443
No 183
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=35.27 E-value=97 Score=41.40 Aligned_cols=105 Identities=11% Similarity=0.063 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHh-------hhhHHHhhcc--cCCCchHHHHHHHhhcccccccc---ccCCCCCCChhhHHHH
Q psy7164 788 IAPKSYKIDDDSEEEEIEE-------VFHDNELAKP--QKTGPQLERQERQAAEGEDDEAG---SQTQEEEDPDKDYDYL 855 (2307)
Q Consensus 788 IL~eF~~~Rl~~y~rr~e~-------l~ni~~li~~--~~~d~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~q~dyI 855 (2307)
++..=.+|+++-.++|++. +.|++++|++ .+.++....+ ......+.|. ..+.-..++.-..+.|
T Consensus 331 v~~rR~~~~L~k~~~r~hiLegl~ia~~~iDeVI~iIR~s~~~k~~L~---~~f~lse~QA~aIL~mrL~rLt~le~~kl 407 (716)
T 1zvu_A 331 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALM---SRFGLTETQAEAILELKLRHLAKLEEMKI 407 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSHHHHHH---HSTTCCTTHHHHHHTCCGGGGSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhcCchHHHHH---HhcCCCHHHHHHHHhhHHHHhhhhHHHHH
Confidence 3344444455555555443 6678999988 5555533332 2222333221 1222222333233222
Q ss_pred HcCccccccHHHHHHHHHHHHHHHHHHHHHHcc--CchhhHHHHHHHHHHH
Q psy7164 856 LGMTFWSLTMERKNELLKKRDDKMTELNILKKK--APTDLWSDDLDALREK 904 (2307)
Q Consensus 856 L~M~L~rLT~ee~~kL~~E~~el~~ei~~L~~~--s~~~lw~~DL~el~k~ 904 (2307)
..|.++|++++++++.-++.-+.. -.++...+..++|-..
T Consensus 408 ---------~~E~~eL~~~i~~l~~iL~~~~~l~~~i~~EL~~i~~kygd~ 449 (716)
T 1zvu_A 408 ---------RGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 449 (716)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred ---------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 357788888888888666554432 2344446677777555
No 184
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=32.08 E-value=31 Score=32.95 Aligned_cols=46 Identities=17% Similarity=0.167 Sum_probs=37.4
Q ss_pred CCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhC--cchHHHHHHHh
Q psy7164 1985 PGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVG--NKNGLTLYKHC 2030 (2307)
Q Consensus 1985 pGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG--~k~G~~L~~~a 2030 (2307)
.||+....++|..-|++|+.+++..|+..|...=| ......|...+
T Consensus 12 lgI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A 59 (70)
T 1u9l_A 12 LDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERA 59 (70)
T ss_dssp HTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHH
Confidence 38999999999999999999999999999977544 44555555444
No 185
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=31.96 E-value=15 Score=44.88 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=25.6
Q ss_pred CCCCCCCChhHHHHHHhcCCccchhhhcC
Q psy7164 1981 LSDLPGVGHSLLFKLNSLGAQTCGDLQNI 2009 (2307)
Q Consensus 1981 V~dLpGIG~~~~~kL~~lGI~TigDL~~l 2009 (2307)
+..+||||++++++|...||+|+.||...
T Consensus 100 l~~V~GiGpk~a~~l~~~Gi~tledL~~a 128 (335)
T 2fmp_A 100 LTRVSGIGPSAARKFVDEGIKTLEDLRKN 128 (335)
T ss_dssp HTTSTTCCHHHHHHHHHTTCCSHHHHHTC
T ss_pred HhCCCCCCHHHHHHHHHcCCCCHHHHHHh
Confidence 35689999999999977799999999863
No 186
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=31.22 E-value=24 Score=44.86 Aligned_cols=82 Identities=15% Similarity=0.206 Sum_probs=49.1
Q ss_pred CChhHHHHHHHHHHhhhc----CCCCCceEEeeee--ccc--cccccCCccCcchHHHHHHHHHHHHHhcCC----CCcc
Q psy7164 2124 YERPLIITYFLLLVRSAE----APREASKFLGHGV--CDY--ITKSSSLPMYISQASQILKEVLFIVNKLKV----DPVE 2191 (2307)
Q Consensus 2124 ~~~~~L~~aA~~lL~~i~----~~~~~yr~~Gv~l--~dl--~skq~~L~l~t~~~~~I~~e~~~L~r~~g~----~~~~ 2191 (2307)
.+...+...+..+..++. ..+..-+.+.+.+ .++ .+++..++.++++...|++.+..|++++.. .+..
T Consensus 359 ~~~~~l~~~l~~L~~~l~~rL~~~~~~~~~vtl~l~~~~~~~~srs~~l~~~t~~~~~i~~~a~~ll~~~~~~~~~~~~~ 438 (459)
T 1t94_A 359 NKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLR 438 (459)
T ss_dssp CCHHHHHHHHHHHHSSTTCCCC---CCCSCEEEEEEETTCCEEEECC-CCCCCCC--CHHHHHHHHHHHHHSSSTTSCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEEEEECCCceeeEEEECCCccCCHHHHHHHHHHHHHHHHhhccCCCCc
Confidence 455666666666666542 2222222222332 333 457778888899999999999999998742 3567
Q ss_pred EEEeeeeccCcccc
Q psy7164 2192 LRGIGIQVSKLEHQ 2205 (2307)
Q Consensus 2192 lRgIGIq~skL~~~ 2205 (2307)
+|++||.+++|.+.
T Consensus 439 ir~lGv~~~~l~~~ 452 (459)
T 1t94_A 439 LRLMGVRISSFPNE 452 (459)
T ss_dssp EEEEEEEECC----
T ss_pred EEEEEEEEccCcCc
Confidence 99999999999764
No 187
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=31.14 E-value=10 Score=43.98 Aligned_cols=53 Identities=19% Similarity=0.320 Sum_probs=0.0
Q ss_pred cCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhh-hCcchHHHHHHHhc
Q psy7164 1978 NIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNE-VGNKNGLTLYKHCR 2031 (2307)
Q Consensus 1978 ~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~-fG~k~G~~L~~~ar 2031 (2307)
..++..+||||++++++|... ..++..|.+.+.++|... +|++.+..++++++
T Consensus 172 ~s~L~~IpGIG~k~ak~Ll~~-FGSl~~i~~As~eeL~~VGIG~~~A~~I~~~f~ 225 (226)
T 3c65_A 172 HSVLDDIPGVGEKRKKALLNY-FGSVKKMKEATVEELQRANIPRAVAEKIYEKLH 225 (226)
T ss_dssp -------------------------------------------------------
T ss_pred cccccccCCCCHHHHHHHHHH-hCCHHHHHhCCHHHHHHcCCCHHHHHHHHHHhh
Confidence 446788999999999999654 356788888899999888 77777887776553
No 188
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=28.48 E-value=22 Score=40.17 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=43.8
Q ss_pred CCCCCCCChhHHHHH-HhcCCccch-hhhcCCHHHHHhh--hCcchHHHHHHHhcCCC
Q psy7164 1981 LSDLPGVGHSLLFKL-NSLGAQTCG-DLQNISLKRLQNE--VGNKNGLTLYKHCRGED 2034 (2307)
Q Consensus 1981 V~dLpGIG~~~~~kL-~~lGI~Tig-DL~~lp~~~L~~~--fG~k~G~~L~~~arGiD 2034 (2307)
+..++|||++++.+| ..+|..++. .+..-+.+.|.+. .|++++++++..+++.-
T Consensus 74 L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~~lk~k~ 131 (191)
T 1ixr_A 74 LLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELKGKV 131 (191)
T ss_dssp HHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHTTTS
T ss_pred HhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 345899999999987 567876654 4677889999988 88899999999998754
No 189
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=27.19 E-value=44 Score=44.48 Aligned_cols=48 Identities=21% Similarity=0.330 Sum_probs=39.8
Q ss_pred CCCCCCChhHHHHHHhc-CCccchhhhcCCHHHHHh--hhCcchHHHHHHH
Q psy7164 1982 SDLPGVGHSLLFKLNSL-GAQTCGDLQNISLKRLQN--EVGNKNGLTLYKH 2029 (2307)
Q Consensus 1982 ~dLpGIG~~~~~kL~~l-GI~TigDL~~lp~~~L~~--~fG~k~G~~L~~~ 2029 (2307)
=+++|+|.++.++|... +|+++.||..+..+.|.. .||.+.+..|++.
T Consensus 449 ldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~l~gfG~Ksa~nLl~a 499 (671)
T 2owo_A 449 MDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNA 499 (671)
T ss_dssp TCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhcccccchhHHHHHHHH
Confidence 45889999999999655 589999999999888876 5888888877654
No 190
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=26.85 E-value=43 Score=44.60 Aligned_cols=48 Identities=23% Similarity=0.380 Sum_probs=39.2
Q ss_pred CCCCCCChhHHHHHHh-cCCccchhhhcCCHHHHHh--hhCcchHHHHHHH
Q psy7164 1982 SDLPGVGHSLLFKLNS-LGAQTCGDLQNISLKRLQN--EVGNKNGLTLYKH 2029 (2307)
Q Consensus 1982 ~dLpGIG~~~~~kL~~-lGI~TigDL~~lp~~~L~~--~fG~k~G~~L~~~ 2029 (2307)
=+++|+|.++.++|-. .+|+++.||..+..+.|.. .||.+.+..|++.
T Consensus 444 ldI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~~l~g~G~Ksa~nLl~a 494 (667)
T 1dgs_A 444 MDIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNLLRQ 494 (667)
T ss_dssp SCCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHHTTSSCCSTTHHHHHHH
T ss_pred cCcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHhcccccchhhHHHHHHH
Confidence 3588999999999955 5689999999998888765 4888888877654
No 191
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=26.19 E-value=14 Score=45.04 Aligned_cols=52 Identities=21% Similarity=0.178 Sum_probs=0.0
Q ss_pred CCCCCC--CCChhHHHHHHhcCCccchhhhcCCHHHHHhhhCc--chHHHHHHHhc
Q psy7164 1980 PLSDLP--GVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGN--KNGLTLYKHCR 2031 (2307)
Q Consensus 1980 PV~dLp--GIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG~--k~G~~L~~~ar 2031 (2307)
||..|+ ||+..+.++|++.|+.|+.++...++..|.+..|- ....++.+.++
T Consensus 26 ~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~is~~~~~~~~~~a~ 81 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAAN 81 (343)
T ss_dssp --------------------------------------------------------
T ss_pred cHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCCCHHHHHHHHHHHH
Confidence 889998 99999999999999999999999999888877552 23344444444
No 192
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=25.41 E-value=28 Score=42.66 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=24.4
Q ss_pred CCCCCCChhHHHHHHhcCCccchhhhc
Q psy7164 1982 SDLPGVGHSLLFKLNSLGAQTCGDLQN 2008 (2307)
Q Consensus 1982 ~dLpGIG~~~~~kL~~lGI~TigDL~~ 2008 (2307)
..+||||++++++|...||+|+.||..
T Consensus 99 ~~v~GiG~k~a~~l~~~Gi~tledL~~ 125 (335)
T 2bcq_A 99 SNIWGAGTKTAQMWYQQGFRSLEDIRS 125 (335)
T ss_dssp HTSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred hcCCCcCHHHHHHHHHcCCCCHHHHHH
Confidence 368999999999998789999999975
No 193
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=23.14 E-value=34 Score=38.99 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=40.7
Q ss_pred CCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhh--hCcchHHHHHHHhcC
Q psy7164 1981 LSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNE--VGNKNGLTLYKHCRG 2032 (2307)
Q Consensus 1981 V~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~--fG~k~G~~L~~~arG 2032 (2307)
+..+||||.+.+.+|... ..++.+|...+.+.|... +|++.+..+++.++.
T Consensus 164 L~~i~gVg~~~a~~Ll~~-fgs~~~l~~a~~e~L~~v~GiG~~~a~~i~~~~~~ 216 (219)
T 2bgw_A 164 LQSFPGIGRRTAERILER-FGSLERFFTASKAEISKVEGIGEKRAEEIKKILMT 216 (219)
T ss_dssp HHTSTTCCHHHHHHHHHH-HSSHHHHTTCCHHHHHHSTTCCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHH-cCCHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHhc
Confidence 446899999999998543 235888999999999887 788889998887653
No 194
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=22.79 E-value=34 Score=42.26 Aligned_cols=101 Identities=15% Similarity=0.072 Sum_probs=58.1
Q ss_pred CCCCCCChhHHHHHHhcCCccchhhhcCC----HHH---------HHhhhC----cchHHHHHHHhcCCCCCccc----c
Q psy7164 1982 SDLPGVGHSLLFKLNSLGAQTCGDLQNIS----LKR---------LQNEVG----NKNGLTLYKHCRGEDDKELT----F 2040 (2307)
Q Consensus 1982 ~dLpGIG~~~~~kL~~lGI~TigDL~~lp----~~~---------L~~~fG----~k~G~~L~~~arGiD~~~V~----~ 2040 (2307)
..+||||++++++|...||+|+.||..-. ... +..++- ...+..+.+.++.+++.... .
T Consensus 105 ~~I~GvG~kta~~l~~~Gi~tledL~~~~~~L~~~~~~Gl~~~~d~~~ripr~ea~~i~~~i~~~l~~~~~~~~v~i~GS 184 (360)
T 2ihm_A 105 TQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRADAEALQQLIEAAVRQTLPGATVTLTGG 184 (360)
T ss_dssp HTSTTCCHHHHHHHHHTTCCSHHHHHTCCTTCCHHHHHHHHTHHHHHSCEEHHHHHHHHHHHHHHHHTTCTTCEEEECHH
T ss_pred hCCCCCCHHHHHHHHHcCCCCHHHHHhcccchHHHHHHHHHHHHHhcCCEEHHHHHHHHHHHHHHHHhcCCCcEEEEccc
Confidence 46999999999999877999999998322 111 111111 02445566677766544221 2
Q ss_pred ccCCcccEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhccccce
Q psy7164 2041 EHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGK 2086 (2307)
Q Consensus 2041 ~~~rKSIs~e~nfg~r~~~~eel~~~L~~La~eL~~RLr~~~~~~r 2086 (2307)
.+-.|..+-++-+-+.-.+.... ..|...|..+|.+.+....
T Consensus 185 yRRgket~gDvDilit~~~~~~~----~~ll~~v~~~L~~~~~i~~ 226 (360)
T 2ihm_A 185 FRRGKLQGHDVDFLITHPEEGQE----VGLLPKVMSCLQSQGLVLY 226 (360)
T ss_dssp HHTTCSEESEEEEEEECSSTTTT----TTHHHHHHHHHHHTTCEEE
T ss_pred cccCCCccCCeEEEEecCChhhh----hhHHHHHHHHHHhCCCeee
Confidence 23445556665553322222111 2366677888888877653
No 195
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=22.72 E-value=64 Score=42.32 Aligned_cols=48 Identities=21% Similarity=0.351 Sum_probs=41.9
Q ss_pred CCCCCChhHHHHHHhcC-CccchhhhcCCHHHHHh--hhCcchHHHHHHHh
Q psy7164 1983 DLPGVGHSLLFKLNSLG-AQTCGDLQNISLKRLQN--EVGNKNGLTLYKHC 2030 (2307)
Q Consensus 1983 dLpGIG~~~~~kL~~lG-I~TigDL~~lp~~~L~~--~fG~k~G~~L~~~a 2030 (2307)
++.|+|.++.++|-..| |+++.||..|..+.|.. .||.+.+..|++..
T Consensus 450 dI~GlG~~~i~~L~~~g~i~~~~Dly~L~~~~L~~l~g~geKsa~nL~~aI 500 (586)
T 4glx_A 450 DVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNAL 500 (586)
T ss_dssp CCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHhcCCCCCHHHHhCCCHHHHhcccCccHHHHHHHHHHH
Confidence 46799999999999888 59999999999999986 58988888887654
No 196
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=22.30 E-value=68 Score=26.76 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCchhhHHHHHHHH
Q psy7164 866 ERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDAL 901 (2307)
Q Consensus 866 ee~~kL~~E~~el~~ei~~L~~~s~~~lw~~DL~el 901 (2307)
-|-+||.++++.+..+|..|+.- .++|.+|
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~e------N~eL~El 36 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKE------NKELAEV 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------HHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh------hHHHHhh
Confidence 46789999999999999999876 4555543
No 197
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=21.95 E-value=41 Score=41.11 Aligned_cols=52 Identities=17% Similarity=0.372 Sum_probs=35.8
Q ss_pred CCCCCCCChhHHHHHHhc---C-CccchhhhcCCHHHHHhhh------CcchHHHHHHHhcCCCCC
Q psy7164 1981 LSDLPGVGHSLLFKLNSL---G-AQTCGDLQNISLKRLQNEV------GNKNGLTLYKHCRGEDDK 2036 (2307)
Q Consensus 1981 V~dLpGIG~~~~~kL~~l---G-I~TigDL~~lp~~~L~~~f------G~k~G~~L~~~arGiD~~ 2036 (2307)
+..|||||.++++++.++ | +..+.+|..- .. +...| |++++.+||+. |+..-
T Consensus 59 l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~~~-~p-~l~ll~~v~GiG~k~a~~l~~~--Gi~tl 120 (335)
T 2bcq_A 59 ACSIPGIGKRMAEKIIEILESGHLRKLDHISES-VP-VLELFSNIWGAGTKTAQMWYQQ--GFRSL 120 (335)
T ss_dssp HHTSTTCCHHHHHHHHHHHHSSSCGGGGGCCTT-HH-HHHHHHTSTTCCHHHHHHHHHT--TCCSH
T ss_pred HhcCCCccHHHHHHHHHHHHcCCchHHHHHhhh-hH-HHHHHhcCCCcCHHHHHHHHHc--CCCCH
Confidence 457999999999999765 3 5566666431 11 33344 77899999875 88654
No 198
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=21.23 E-value=43 Score=49.37 Aligned_cols=59 Identities=10% Similarity=0.142 Sum_probs=49.3
Q ss_pred cCCCCCCCCCChhHHHHHHhcCCccchhhhcCCHHHHHhhhC--cchHHHHHHHhcCCCCC
Q psy7164 1978 NIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVG--NKNGLTLYKHCRGEDDK 2036 (2307)
Q Consensus 1978 ~LPV~dLpGIG~~~~~kL~~lGI~TigDL~~lp~~~L~~~fG--~k~G~~L~~~arGiD~~ 2036 (2307)
..|+..|||||...+++|...||+|+.||..++...+...++ +..+..+.+.++....-
T Consensus 1556 ~~~L~qip~i~~~~ar~l~~~gi~t~~dl~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~i 1616 (1724)
T 4f92_B 1556 DSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNI 1616 (1724)
T ss_dssp SCGGGGSTTCCHHHHHHHHHHTCCSHHHHHSSCHHHHTTSSCCCHHHHHHHHHHHHHSCCE
T ss_pred CcCEecCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHHCCChHHHHHHHHHHHhCCce
Confidence 457889999999999999999999999999999999988876 34567777777655433
Done!