Your job contains 1 sequence.
>psy7164
MSSDESDFDPDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPIT
ETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTIS
VWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYN
DEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKD
DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVK
LYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAI
VKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKN
HIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTCVPKLEDANDAGTKNSIDCTLILTEGD
SAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYT
TVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKA
REELSFYSLPEFEEWKEETTNWHTYKIKYYKVVYVTGVLLFKMNLHKVTSDSISMFIGRI
EPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNFK
GEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDTLDTLLHGAEKDEVHPGPG
RKSHPRPIAPKSYKIDDDSEEEEIEEVFHDNELAKPQKTGPQLERQERQAAEGEDDEAGS
QTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDA
LREKDKIHPCPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSSGEDAPPPTKASPVKK
KKPAAKRPAPKSDSSDLSDSDGDSDFASRKKKTAAAKKAKPAKKESEYSSTVCLFKRFGR
RNCNDGGLIPKSQREGAQDSDLENNCRLDEVERKEKEEENSNITKIKSKLKEKGSKKRNP
LSSLDDTMPSAAGRRVEPKYEELLIKAEKAAAPKKPNEVLPGWESNLRPSADKAESRKRT
QTSQGTESEERKGHLRRWRRKEEESTQTVQVELREGVNISAPKPQASSTKNASNEDFLGE
FYNKSRLHHLSTMGSMFKQYVNQLISLQQDKQLPAIQVISIRSPRARPPRRSSTMGSMFK
QYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPKTTAPKKKKKGG
YMEAKKRKLEEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMM
LHGGIYHHYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYLLY
TGTDAKPLTKLLQKSYFENTEAPCCSKSLVETSSHTSTVSDSVDNTEESKSEAVNSEESK
SEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMG
SMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHID
MDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTRE
YGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLN
ALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPSPSPILDMSTSIL
DTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLNPIVILLRF
LRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSL
TPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIP
LSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTF
EHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAP
REASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITK
SSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSKLEHQSKTLATIDTFFTNKG
KPPDQLNNPRPGPSNSTITPGPSNSTLPPGPSNSTLPPGPSNSTLLPGPSFGLSLPLGLS
NLMVHKAVRFKFTSRIKQSNGTQSGSV
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy7164
(2307 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1NZF0 - symbol:TOP2A "DNA topoisomerase 2" spe... 731 3.1e-246 7
UNIPROTKB|O42130 - symbol:TOP2A "DNA topoisomerase 2-alph... 732 8.0e-246 7
UNIPROTKB|F1MDU7 - symbol:TOP2A "DNA topoisomerase 2" spe... 714 1.6e-244 8
MGI|MGI:98790 - symbol:Top2a "topoisomerase (DNA) II alph... 717 3.7e-244 8
UNIPROTKB|J9PAY8 - symbol:TOP2A "DNA topoisomerase 2" spe... 712 2.9e-243 7
UNIPROTKB|F1Q2M4 - symbol:TOP2A "DNA topoisomerase 2" spe... 712 3.1e-243 8
UNIPROTKB|O42131 - symbol:TOP2B "DNA topoisomerase 2-beta... 713 4.9e-243 8
UNIPROTKB|P41515 - symbol:TOP2A "DNA topoisomerase 2-alph... 719 6.1e-243 8
UNIPROTKB|O46374 - symbol:TOP2A "DNA topoisomerase 2-alph... 714 6.2e-243 9
UNIPROTKB|F1NR58 - symbol:TOP2B "DNA topoisomerase 2" spe... 713 6.3e-243 8
ZFIN|ZDB-GENE-041008-136 - symbol:top2b "topoisomerase (D... 719 7.8e-243 8
UNIPROTKB|F1PRA7 - symbol:TOP2B "DNA topoisomerase 2" spe... 719 4.4e-242 8
ZFIN|ZDB-GENE-030131-2453 - symbol:top2a "topoisomerase (... 710 8.1e-242 8
UNIPROTKB|F1P2F2 - symbol:TOP2A "DNA topoisomerase 2" spe... 819 9.8e-242 6
MGI|MGI:98791 - symbol:Top2b "topoisomerase (DNA) II beta... 719 1.3e-241 8
UNIPROTKB|F1RS45 - symbol:TOP2B "DNA topoisomerase 2" spe... 716 1.5e-241 8
UNIPROTKB|P11388 - symbol:TOP2A "DNA topoisomerase 2-alph... 714 1.9e-241 7
UNIPROTKB|Q64399 - symbol:TOP2B "DNA topoisomerase 2-beta... 719 4.4e-241 8
UNIPROTKB|Q02880 - symbol:TOP2B "DNA topoisomerase 2-beta... 719 1.4e-240 8
WB|WBGene00010785 - symbol:top-2 species:6239 "Caenorhabd... 700 4.3e-240 7
UNIPROTKB|Q23670 - symbol:K12D12.1 "Probable DNA topoisom... 700 4.3e-240 7
UNIPROTKB|E1BZ19 - symbol:TOP2B "DNA topoisomerase 2" spe... 713 1.4e-239 8
UNIPROTKB|F1M7A0 - symbol:Top2a "DNA topoisomerase 2" spe... 1748 1.2e-238 5
RGD|62048 - symbol:Top2a "topoisomerase (DNA) II alpha" s... 1712 7.7e-235 5
FB|FBgn0003732 - symbol:Top2 "Topoisomerase 2" species:72... 747 3.4e-233 5
UNIPROTKB|E9PCY5 - symbol:TOP2B "DNA topoisomerase 2" spe... 719 7.7e-233 6
UNIPROTKB|E9PTY5 - symbol:Top2a "DNA topoisomerase 2" spe... 711 3.5e-228 8
POMBASE|SPBC1A4.03c - symbol:top2 "DNA topoisomerase II" ... 570 5.1e-194 8
UNIPROTKB|F1MU48 - symbol:TOP2B "DNA topoisomerase 2" spe... 719 1.3e-189 7
UNIPROTKB|A8JD08 - symbol:TOP2 "DNA topoisomerase 2" spec... 826 1.3e-178 5
ASPGD|ASPL0000029372 - symbol:top2 species:162425 "Emeric... 517 2.1e-173 7
UNIPROTKB|Q5B224 - symbol:AN5406.2 "DNA topoisomerase 2" ... 517 2.1e-173 7
UNIPROTKB|Q0DYE1 - symbol:Os02g0699700 "DNA topoisomerase... 607 1.5e-170 5
UNIPROTKB|Q7RJ69 - symbol:PY03394 "DNA topoisomerase 2" s... 628 2.5e-162 6
WB|WBGene00019884 - symbol:R05D3.12 species:6239 "Caenorh... 459 2.2e-141 6
UNIPROTKB|P34534 - symbol:R05D3.12 "Putative DNA topoisom... 459 2.2e-141 6
SGD|S000005032 - symbol:TOP2 "Topoisomerase II, relieves ... 537 3.7e-139 6
CGD|CAL0005199 - symbol:TOP2 species:5476 "Candida albica... 517 2.3e-138 7
UNIPROTKB|Q5A1E7 - symbol:TOP2 "DNA topoisomerase 2" spec... 517 2.3e-138 7
DICTYBASE|DDB_G0270418 - symbol:top2 "DNA topoisomerase I... 563 5.3e-136 6
UNIPROTKB|Q755V8 - symbol:AER410W "DNA topoisomerase 2" s... 534 7.3e-135 6
TAIR|locus:2076201 - symbol:TOPII "AT3G23890" species:370... 549 1.4e-130 5
UNIPROTKB|F1P5H4 - symbol:REV1 "DNA repair protein REV1" ... 598 5.1e-124 5
UNIPROTKB|Q4KWZ7 - symbol:REV1 "DNA repair protein REV1" ... 598 5.1e-124 5
UNIPROTKB|Q7S9W8 - symbol:NCU06338 "DNA topoisomerase 2" ... 461 1.4e-114 6
UNIPROTKB|Q9UBZ9 - symbol:REV1 "DNA repair protein REV1" ... 599 1.7e-113 5
RGD|1306715 - symbol:Rev1 "REV1, polymerase (DNA directed... 595 2.9e-113 4
DICTYBASE|DDB_G0279737 - symbol:top2mt "DNA topoisomerase... 544 1.8e-111 6
MGI|MGI:1929074 - symbol:Rev1 "REV1 homolog (S. cerevisia... 591 2.8e-111 4
UNIPROTKB|E2RPL9 - symbol:REV1 "Uncharacterized protein" ... 604 1.3e-110 5
UNIPROTKB|F1STE9 - symbol:REV1 "Uncharacterized protein" ... 585 2.7e-107 5
UNIPROTKB|F1N787 - symbol:REV1 "Uncharacterized protein" ... 597 1.4e-105 5
FB|FBgn0035150 - symbol:Rev1 "Rev1" species:7227 "Drosoph... 600 2.4e-105 2
WB|WBGene00022854 - symbol:cin-4 species:6239 "Caenorhabd... 610 2.4e-100 3
UNIPROTKB|G5ECQ8 - symbol:cin-4 "Chromosome instability 4... 610 2.4e-100 3
ZFIN|ZDB-GENE-081105-180 - symbol:si:dkey-57a22.7 "si:dke... 568 6.7e-100 5
ASPGD|ASPL0000012133 - symbol:AN3909 species:162425 "Emer... 449 8.2e-74 4
WB|WBGene00014066 - symbol:rev-1 species:6239 "Caenorhabd... 419 6.7e-64 4
UNIPROTKB|F1NWD7 - symbol:TOP2B "DNA topoisomerase 2" spe... 639 5.2e-61 1
UNIPROTKB|J3KTB7 - symbol:TOP2A "DNA topoisomerase 2-alph... 531 1.6e-49 1
POMBASE|SPBC1347.01c - symbol:rev1 "deoxycytidyl transfer... 311 4.1e-46 4
CGD|CAL0001748 - symbol:orf19.4412 species:5476 "Candida ... 356 9.3e-46 3
SGD|S000005873 - symbol:REV1 "Deoxycytidyl transferase" s... 314 6.2e-45 4
TAIR|locus:2156319 - symbol:REV1 species:3702 "Arabidopsi... 406 3.9e-36 3
UNIPROTKB|Q4G402 - symbol:TOP2B "DNA topoisomerase II bet... 208 5.8e-33 2
WB|WBGene00021604 - symbol:Y46H3C.4 species:6239 "Caenorh... 283 1.4e-31 3
UNIPROTKB|Q9N4W3 - symbol:Y46H3C.4 "Protein Y46H3C.4" spe... 283 1.4e-31 3
UNIPROTKB|Q83EN5 - symbol:dinP "DNA polymerase IV" specie... 252 2.4e-31 4
TIGR_CMR|CBU_0280 - symbol:CBU_0280 "DNA-damage-inducible... 252 2.4e-31 4
RGD|1586156 - symbol:Top2b "topoisomerase (DNA) II beta" ... 339 4.3e-29 1
UNIPROTKB|Q47155 - symbol:dinB species:83333 "Escherichia... 267 1.7e-28 2
TIGR_CMR|CPS_1040 - symbol:CPS_1040 "DNA polymerase IV" s... 233 8.8e-25 3
UNIPROTKB|Q71Y46 - symbol:dinB "DNA polymerase IV" specie... 251 2.9e-24 3
UNIPROTKB|Q74CQ6 - symbol:dinB "DNA polymerase IV" specie... 222 3.8e-24 4
TIGR_CMR|GSU_1616 - symbol:GSU_1616 "ImpB/MucB/SamB famil... 222 3.8e-24 4
UNIPROTKB|O67137 - symbol:gyrB "DNA gyrase subunit B" spe... 208 5.5e-24 5
UNIPROTKB|Q9KPS5 - symbol:dinB "DNA polymerase IV" specie... 219 6.3e-23 3
TIGR_CMR|VC_2287 - symbol:VC_2287 "DNA-damage-inducible p... 219 6.3e-23 3
UNIPROTKB|Q8EHU9 - symbol:dinB "DNA polymerase IV" specie... 247 6.6e-23 2
TIGR_CMR|SO_1114 - symbol:SO_1114 "DNA-damage-inducible p... 247 6.6e-23 2
UNIPROTKB|P77993 - symbol:gyrB "DNA gyrase subunit B" spe... 206 2.6e-22 5
UNIPROTKB|Q74H89 - symbol:gyrB "DNA gyrase subunit B" spe... 209 1.3e-21 3
TIGR_CMR|GSU_0003 - symbol:GSU_0003 "DNA gyrase, B subuni... 209 1.3e-21 3
TIGR_CMR|CHY_2705 - symbol:CHY_2705 "DNA gyrase, B subuni... 217 2.7e-20 4
UNIPROTKB|Q81M86 - symbol:dinB "DNA polymerase IV" specie... 181 1.6e-19 4
TIGR_CMR|BA_4366 - symbol:BA_4366 "DNA-damage-inducible p... 181 1.6e-19 4
TIGR_CMR|CJE_0003 - symbol:CJE_0003 "DNA gyrase, B subuni... 184 3.4e-19 3
ASPGD|ASPL0000039840 - symbol:AN3373 species:162425 "Emer... 205 4.7e-19 3
ZFIN|ZDB-GENE-060526-137 - symbol:polk "polymerase (DNA d... 193 1.4e-18 3
UNIPROTKB|Q23CY2 - symbol:TTHERM_00052080 "DNA topoisomer... 169 1.8e-18 3
UNIPROTKB|Q74H50 - symbol:dinB "DNA polymerase IV" specie... 195 2.0e-18 3
TIGR_CMR|GSU_0043 - symbol:GSU_0043 "ImpB/MucB/SamB famil... 195 2.0e-18 3
UNIPROTKB|P05652 - symbol:gyrB "DNA gyrase subunit B" spe... 184 2.6e-18 5
TIGR_CMR|CBU_0004 - symbol:CBU_0004 "DNA gyrase, B subuni... 207 2.8e-18 3
UNIPROTKB|Q23CP4 - symbol:TTHERM_01335310 "DNA topoisomer... 169 3.7e-18 5
UNIPROTKB|Q8EYL9 - symbol:LA_4194 "DNA gyrase subunit B" ... 190 3.8e-18 3
UNIPROTKB|O08399 - symbol:gyrB "DNA gyrase subunit B" spe... 192 7.1e-18 4
UNIPROTKB|A6QNV6 - symbol:POLK "Uncharacterized protein" ... 181 1.0e-17 3
UNIPROTKB|Q5Q9G5 - symbol:POLK "DNA polymerase kappa" spe... 160 2.9e-17 3
UNIPROTKB|E9PST4 - symbol:Polk "Protein Polk" species:101... 179 3.2e-17 3
WARNING: Descriptions of 102 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|F1NZF0 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 IPI:IPI00822514 GeneTree:ENSGT00390000016222
EMBL:AADN02068749 Ensembl:ENSGALT00000040062 Uniprot:F1NZF0
Length = 1553
Score = 731 (262.4 bits), Expect = 3.1e-246, Sum P(7) = 3.1e-246
Identities = 134/170 (78%), Positives = 155/170 (91%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
VPKL+DANDAG KNSIDCTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+
Sbjct: 439 VPKLDDANDAGNKNSIDCTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKMLNVREAS 498
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
HKQI+ENAEINN++KI+GLQY K Y E +K+LRYG++MIMTDQDQDGSHIKGL+INFI
Sbjct: 499 HKQIMENAEINNIIKIVGLQYKKNYEDRESLKSLRYGKIMIMTDQDQDGSHIKGLLINFI 558
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHT 624
HHNWP+LLR FLEEFITPIIK +K +EE+ FYS+PEFEEWK T N+++
Sbjct: 559 HHNWPSLLRHNFLEEFITPIIKVSKNKEEIPFYSIPEFEEWKSSTQNYNS 608
Score = 701 (251.8 bits), Expect = 3.1e-246, Sum P(7) = 3.1e-246
Identities = 136/203 (66%), Positives = 160/203 (78%)
Query: 158 EDKVTGV-VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKK 216
E KV V VP +IFG LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VET+C EYKK
Sbjct: 130 EHKVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACREYKK 189
Query: 217 SFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
FKQ W DNM K +K +D+T +TF PDL+KFKMT LDKD+V L++RRAYD A
Sbjct: 190 LFKQTWTDNMGKAGEMTLKHFDGEDYTCVTFQPDLSKFKMTILDKDIVALMSRRAYDIAG 249
Query: 277 STKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
STKDVKVFLNG++LPVK F+ YV LY D+ DE G+ +K+I+E VN RWEV + S++GF
Sbjct: 250 STKDVKVFLNGKRLPVKGFRSYVDLYLKDKVDETGNALKVIHEEVNSRWEVCLTLSEKGF 309
Query: 336 QQVSFVNSIATTKGGRHVDAVVD 358
QQVSFVNSIATTKGGRHVD V D
Sbjct: 310 QQVSFVNSIATTKGGRHVDYVAD 332
Score = 530 (191.6 bits), Expect = 3.1e-246, Sum P(7) = 3.1e-246
Identities = 97/143 (67%), Positives = 119/143 (83%)
Query: 21 PKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITY 80
PK ++SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + R++T+
Sbjct: 20 PKADGAQKRLSVERIYQKKTQLEHILLRPDTYIGSVETVTQQMWVFDEDVG-LNCRDVTF 78
Query: 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
VPGLYKIFDEILVNA DNKQRD M+CIK+T++ E NTISVWNNGKGIPVVEHK EK++V
Sbjct: 79 VPGLYKIFDEILVNAADNKQRDKSMSCIKVTIDPENNTISVWNNGKGIPVVEHKVEKVYV 138
Query: 141 PTMIFGHLLTSSNYNDEEDKVTG 163
P +IFG LLTSSNY+D+E KVTG
Sbjct: 139 PALIFGQLLTSSNYDDDEKKVTG 161
Score = 339 (124.4 bits), Expect = 3.1e-246, Sum P(7) = 3.1e-246
Identities = 60/97 (61%), Positives = 78/97 (80%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWY+PIIPMVL+NGAEGIGTGW KIPN + RE V+NI+ ++ G++PLPM P YKN
Sbjct: 836 RVEPEWYMPIIPMVLINGAEGIGTGWSCKIPNFDIRETVNNIRCLLDGKEPLPMLPSYKN 895
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
FKG ID G +++V++GE++ILD +EITEL V W
Sbjct: 896 FKGTIDELGPNQYVISGEVSILDSTTIEITELPVRTW 932
Score = 208 (78.3 bits), Expect = 3.1e-246, Sum P(7) = 3.1e-246
Identities = 44/82 (53%), Positives = 57/82 (69%)
Query: 396 QMAKTLIDIGVRLG--GMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGST 453
Q+ LID+ + G+ +KPFQVKNH+WIF+N LI NPTFDSQTKENMTLQ SFGST
Sbjct: 333 QIVTKLIDVVKKKNKNGVGVKPFQVKNHMWIFVNSLIENPTFDSQTKENMTLQAKSFGST 392
Query: 454 CVPKLEDANDAGTKNSIDCTLI 475
C KL ++ K ++ C ++
Sbjct: 393 C--KL---SEKFIKGAVGCGIV 409
Score = 177 (67.4 bits), Expect = 3.1e-246, Sum P(7) = 3.1e-246
Identities = 39/89 (43%), Positives = 55/89 (61%)
Query: 816 PQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKR 875
P K +L+ +E E E DE+G ++ PD ++YLL M W LT E+K+EL K+R
Sbjct: 1087 PVKAWKELQNKE----EEEGDESGEESAAATGPD--FNYLLNMPLWYLTKEKKDELCKQR 1140
Query: 876 DDKMTELNILKKKAPTDLWSDDLDALREK 904
D+K EL LK K+P+DLW +DL A E+
Sbjct: 1141 DNKDKELEDLKHKSPSDLWKEDLAAFVEE 1169
Score = 46 (21.3 bits), Expect = 3.1e-246, Sum P(7) = 3.1e-246
Identities = 15/68 (22%), Positives = 30/68 (44%)
Query: 1129 PSADKAESRKRTQTSQGTESEERKGHLRRWRRKEEESTQTVQVELREGVNISAPKPQASS 1188
P A +A R+ + S+ T + +K R R+ + T + + G S P ++
Sbjct: 1449 PKAPRAAQREESPPSEATAAVAKKPGPPRGRKATKRLTSSSDSDSDFG---SRPSKSVAA 1505
Query: 1189 TKNASNED 1196
K+ ++D
Sbjct: 1506 KKSKRDDD 1513
Score = 44 (20.5 bits), Expect = 4.2e-42, Sum P(4) = 4.2e-42
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 1986 GVGHSL--LFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFE 2041
G G L +F C + + + + + +G +TL KH GED +TF+
Sbjct: 165 GYGAKLCNIFSTKFTVETACREYKKLFKQTWTDNMGKAGEMTL-KHFDGEDYTCVTFQ 221
Score = 42 (19.8 bits), Expect = 3.1e-245, Sum P(8) = 3.1e-245
Identities = 12/74 (16%), Positives = 33/74 (44%)
Query: 1124 ESNLRPSADKAESRKRTQTSQGTESEERKGHLRRWRRKEEESTQTVQVELREGVNISAPK 1183
+ ++ ++++ ++ +S E K L + +RK E+ T+ + +
Sbjct: 1237 KKKIKSEKNESDEKQEGNSSGDKEPSSLKQRLAQ-KRKAEQGTKRQTTLPFKPIKKMKRN 1295
Query: 1184 PQASSTKNASNEDF 1197
P + S ++ ++DF
Sbjct: 1296 PWSDSESDSESDDF 1309
Score = 39 (18.8 bits), Expect = 3.1e-245, Sum P(8) = 3.1e-245
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 2203 EHQSKTLATIDTFFTNKGKPP 2223
E+Q + D+ T+K KPP
Sbjct: 1346 EYQENSEGNTDSDTTSKKKPP 1366
Score = 38 (18.4 bits), Expect = 3.7e-200, Sum P(6) = 3.7e-200
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 2057 FQNNQEMETFLKQLAGEV 2074
F+ N + E + QLAG V
Sbjct: 735 FKRNDKREVKVAQLAGSV 752
Score = 38 (18.4 bits), Expect = 3.7e-200, Sum P(6) = 3.7e-200
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 2027 YKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
+K+ EDD +T +K V + F ++
Sbjct: 639 FKYSGPEDDAAITLAFSKKKVEERKEWLTNFMEDR 673
Score = 37 (18.1 bits), Expect = 4.3e-125, Sum P(7) = 4.3e-125
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 116 TNTISVWNNGKGIPV 130
T + V+ NGK +PV
Sbjct: 251 TKDVKVFLNGKRLPV 265
>UNIPROTKB|O42130 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000819
"sister chromatid segregation" evidence=IBA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS;IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=ISS;IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=ISS;IBA] [GO:0009295 "nucleoid" evidence=IBA]
[GO:0000287 "magnesium ion binding" evidence=ISS] [GO:0008301 "DNA
binding, bending" evidence=ISS] [GO:0006974 "response to DNA damage
stimulus" evidence=ISS] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISS] [GO:0006266 "DNA ligation"
evidence=ISS] [GO:0030263 "apoptotic chromosome condensation"
evidence=ISS] [GO:0008144 "drug binding" evidence=ISS] [GO:0003677
"DNA binding" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005654 GO:GO:0000287 GO:GO:0008144
GO:GO:0006974 GO:GO:0006261 GO:GO:0008301 GO:GO:0043065
GO:GO:0030263 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0006266
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0009330 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
EMBL:AB007445 IPI:IPI00822514 RefSeq:NP_990122.1 UniGene:Gga.2010
ProteinModelPortal:O42130 SMR:O42130 STRING:O42130 GeneID:395570
KEGG:gga:395570 CTD:7153 HOGENOM:HOG000216693 HOVERGEN:HBG052998
NextBio:20815644 Uniprot:O42130
Length = 1553
Score = 732 (262.7 bits), Expect = 8.0e-246, Sum P(7) = 8.0e-246
Identities = 134/170 (78%), Positives = 156/170 (91%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
VPKL+DANDAG+KNSIDCTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+
Sbjct: 439 VPKLDDANDAGSKNSIDCTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKMLNVREAS 498
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
HKQI+ENAEINN++KI+GLQY K Y E +K+LRYG++MIMTDQDQDGSHIKGL+INFI
Sbjct: 499 HKQIMENAEINNIIKIVGLQYKKNYEDRESLKSLRYGKIMIMTDQDQDGSHIKGLLINFI 558
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHT 624
HHNWP+LLR FLEEFITPIIK +K +EE+ FYS+PEFEEWK T N+++
Sbjct: 559 HHNWPSLLRHNFLEEFITPIIKVSKNKEEIPFYSIPEFEEWKSSTQNYNS 608
Score = 701 (251.8 bits), Expect = 8.0e-246, Sum P(7) = 8.0e-246
Identities = 136/203 (66%), Positives = 160/203 (78%)
Query: 158 EDKVTGV-VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKK 216
E KV V VP +IFG LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VET+C EYKK
Sbjct: 130 EHKVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACREYKK 189
Query: 217 SFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
FKQ W DNM K +K +D+T +TF PDL+KFKMT LDKD+V L++RRAYD A
Sbjct: 190 LFKQTWTDNMGKAGEMTLKHFDGEDYTCVTFQPDLSKFKMTILDKDIVALMSRRAYDIAG 249
Query: 277 STKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
STKDVKVFLNG++LPVK F+ YV LY D+ DE G+ +K+I+E VN RWEV + S++GF
Sbjct: 250 STKDVKVFLNGKRLPVKGFRSYVDLYLKDKVDETGNALKVIHEEVNSRWEVCLTLSEKGF 309
Query: 336 QQVSFVNSIATTKGGRHVDAVVD 358
QQVSFVNSIATTKGGRHVD V D
Sbjct: 310 QQVSFVNSIATTKGGRHVDYVAD 332
Score = 530 (191.6 bits), Expect = 8.0e-246, Sum P(7) = 8.0e-246
Identities = 97/143 (67%), Positives = 119/143 (83%)
Query: 21 PKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITY 80
PK ++SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + R++T+
Sbjct: 20 PKADGAQKRLSVERIYQKKTQLEHILLRPDTYIGSVETVTQQMWVFDEDVG-LNCRDVTF 78
Query: 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
VPGLYKIFDEILVNA DNKQRD M+CIK+T++ E NTISVWNNGKGIPVVEHK EK++V
Sbjct: 79 VPGLYKIFDEILVNAADNKQRDKSMSCIKVTIDPENNTISVWNNGKGIPVVEHKVEKVYV 138
Query: 141 PTMIFGHLLTSSNYNDEEDKVTG 163
P +IFG LLTSSNY+D+E KVTG
Sbjct: 139 PALIFGQLLTSSNYDDDEKKVTG 161
Score = 339 (124.4 bits), Expect = 8.0e-246, Sum P(7) = 8.0e-246
Identities = 60/97 (61%), Positives = 78/97 (80%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWY+PIIPMVL+NGAEGIGTGW KIPN + RE V+NI+ ++ G++PLPM P YKN
Sbjct: 836 RVEPEWYMPIIPMVLINGAEGIGTGWSCKIPNFDIRETVNNIRCLLDGKEPLPMLPSYKN 895
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
FKG ID G +++V++GE++ILD +EITEL V W
Sbjct: 896 FKGTIDELGPNQYVISGEVSILDSTTIEITELPVRTW 932
Score = 208 (78.3 bits), Expect = 8.0e-246, Sum P(7) = 8.0e-246
Identities = 44/82 (53%), Positives = 57/82 (69%)
Query: 396 QMAKTLIDIGVRLG--GMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGST 453
Q+ LID+ + G+ +KPFQVKNH+WIF+N LI NPTFDSQTKENMTLQ SFGST
Sbjct: 333 QIVTKLIDVVKKKNKNGVGVKPFQVKNHMWIFVNSLIENPTFDSQTKENMTLQAKSFGST 392
Query: 454 CVPKLEDANDAGTKNSIDCTLI 475
C KL ++ K ++ C ++
Sbjct: 393 C--KL---SEKFIKGAVGCGIV 409
Score = 177 (67.4 bits), Expect = 8.0e-246, Sum P(7) = 8.0e-246
Identities = 39/89 (43%), Positives = 55/89 (61%)
Query: 816 PQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKR 875
P K +L+ +E E E DE+G ++ PD ++YLL M W LT E+K+EL K+R
Sbjct: 1087 PVKAWKELQNKE----EEEGDESGEESAAATGPD--FNYLLNMPLWYLTKEKKDELCKQR 1140
Query: 876 DDKMTELNILKKKAPTDLWSDDLDALREK 904
D+K EL LK K+P+DLW +DL A E+
Sbjct: 1141 DNKDKELEDLKHKSPSDLWKEDLAAFVEE 1169
Score = 44 (20.5 bits), Expect = 2.6e-43, Sum P(3) = 2.6e-43
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 1986 GVGHSL--LFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFE 2041
G G L +F C + + + + + +G +TL KH GED +TF+
Sbjct: 165 GYGAKLCNIFSTKFTVETACREYKKLFKQTWTDNMGKAGEMTL-KHFDGEDYTCVTFQ 221
Score = 42 (19.8 bits), Expect = 2.4e-245, Sum P(8) = 2.4e-245
Identities = 12/74 (16%), Positives = 33/74 (44%)
Query: 1124 ESNLRPSADKAESRKRTQTSQGTESEERKGHLRRWRRKEEESTQTVQVELREGVNISAPK 1183
+ ++ ++++ ++ +S E K L + +RK E+ T+ + +
Sbjct: 1237 KKKIKSEKNESDEKQEGNSSGDKEPSSLKQRLAQ-KRKAEQGTKRQTTLPFKPIKKMKRN 1295
Query: 1184 PQASSTKNASNEDF 1197
P + S ++ ++DF
Sbjct: 1296 PWSDSESDSESDDF 1309
Score = 41 (19.5 bits), Expect = 8.0e-246, Sum P(7) = 8.0e-246
Identities = 14/68 (20%), Positives = 29/68 (42%)
Query: 1129 PSADKAESRKRTQTSQGTESEERKGHLRRWRRKEEESTQTVQVELREGVNISAPKPQASS 1188
P A + R+ + S+ T + +K R R+ + T + + G S P ++
Sbjct: 1449 PKAPRRAQREESPPSEATAAVAKKPGPPRGRKATKRLTSSSDSDSDFG---SRPSKSVAA 1505
Query: 1189 TKNASNED 1196
K+ ++D
Sbjct: 1506 KKSKRDDD 1513
Score = 39 (18.8 bits), Expect = 2.4e-245, Sum P(8) = 2.4e-245
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 2203 EHQSKTLATIDTFFTNKGKPP 2223
E+Q + D+ T+K KPP
Sbjct: 1346 EYQENSEGNTDSDTTSKKKPP 1366
Score = 38 (18.4 bits), Expect = 2.8e-200, Sum P(6) = 2.8e-200
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 2027 YKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
+K+ EDD +T +K V + F ++
Sbjct: 639 FKYSGPEDDAAITLAFSKKKVEERKEWLTNFMEDR 673
Score = 37 (18.1 bits), Expect = 3.6e-200, Sum P(6) = 3.6e-200
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 1698 NLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALP 1743
N+ +P D+ K+ +Y YN +N E V L++N ++P
Sbjct: 677 NVHGLPEDYLYGKDTNYLTYNDF----INKELV-LFSNSDNERSIP 717
Score = 37 (18.1 bits), Expect = 3.3e-125, Sum P(7) = 3.3e-125
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 116 TNTISVWNNGKGIPV 130
T + V+ NGK +PV
Sbjct: 251 TKDVKVFLNGKRLPV 265
>UNIPROTKB|F1MDU7 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9913 "Bos
taurus" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0045870
"positive regulation of retroviral genome replication"
evidence=IEA] [GO:0043130 "ubiquitin binding" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0042826 "histone deacetylase binding"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0040016 "embryonic cleavage" evidence=IEA]
[GO:0030263 "apoptotic chromosome condensation" evidence=IEA]
[GO:0009330 "DNA topoisomerase complex (ATP-hydrolyzing)"
evidence=IEA] [GO:0008144 "drug binding" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0007059 "chromosome
segregation" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006266 "DNA ligation" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0005814
"centriole" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005080 "protein kinase
C binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059
GO:GO:0005654 GO:GO:0005730 GO:GO:0005814 GO:GO:0008144
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0043065 GO:GO:0030263 Gene3D:3.30.565.10 SUPFAM:SSF55874
GO:GO:0000793 GO:GO:0006266 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GO:GO:0045870 GeneTree:ENSGT00390000016222
OMA:MFKQTWM EMBL:DAAA02049137 IPI:IPI00923890
Ensembl:ENSBTAT00000061367 ArrayExpress:F1MDU7 Uniprot:F1MDU7
Length = 1533
Score = 714 (256.4 bits), Expect = 1.6e-244, Sum P(8) = 1.6e-244
Identities = 129/167 (77%), Positives = 152/167 (91%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+PKL+DANDAG +NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+
Sbjct: 438 IPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREAS 497
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
HKQI+ENAEINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFI
Sbjct: 498 HKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFI 557
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN 621
HHNWP+LLR FLEEFITPI+K +K ++E++FYSLPEFEEWK T N
Sbjct: 558 HHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPN 604
Score = 700 (251.5 bits), Expect = 1.6e-244, Sum P(8) = 1.6e-244
Identities = 136/203 (66%), Positives = 160/203 (78%)
Query: 158 EDKVTGV-VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKK 216
E KV + VP +IFG LLTSSNY+DEE KVTGGRNGYGAKLCNIFS+KF VET+ EYKK
Sbjct: 129 EHKVEKMYVPALIFGQLLTSSNYDDEEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKK 188
Query: 217 SFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
FKQ W DNM K E+K S +D+T ITF PDL+KFKM SLDKD+V L+ RRAYD A
Sbjct: 189 MFKQTWMDNMGKAGEMELKPFSGEDYTCITFHPDLSKFKMQSLDKDIVALMVRRAYDIAG 248
Query: 277 STKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
STKDVKV+LNG +LPVK F+ YV LY D+ DE G+P+K+I+E VN RWEV + S++GF
Sbjct: 249 STKDVKVYLNGNRLPVKGFRSYVDLYLKDKVDETGNPLKVIHEQVNHRWEVCLTMSEKGF 308
Query: 336 QQVSFVNSIATTKGGRHVDAVVD 358
QQ+SFVNSIAT+KGGRHVD V D
Sbjct: 309 QQISFVNSIATSKGGRHVDYVAD 331
Score = 550 (198.7 bits), Expect = 1.6e-244, Sum P(8) = 1.6e-244
Identities = 106/159 (66%), Positives = 126/159 (79%)
Query: 6 SDFDPDVQQNGNGPSPKKKTPANK-MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMW 64
S P V +N KK A K +S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW
Sbjct: 4 SPLQP-VNENMQVSKTKKNEDAKKRLSIERIYQKKTQLEHILLRPDTYIGSVESVTQQMW 62
Query: 65 LMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNN 124
+ + + + RE+TYVPGLYKIFDEILVNA DNKQRDPKM+CI+IT++ E N IS+WNN
Sbjct: 63 VYDEDIG-INYREVTYVPGLYKIFDEILVNAADNKQRDPKMSCIRITIDPENNLISIWNN 121
Query: 125 GKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTG 163
GKGIPVVEHK EKM+VP +IFG LLTSSNY+DEE KVTG
Sbjct: 122 GKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDEEKKVTG 160
Score = 340 (124.7 bits), Expect = 1.6e-244, Sum P(8) = 1.6e-244
Identities = 58/97 (59%), Positives = 79/97 (81%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 835 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLMDGEEPLPMLPSYKN 894
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
FKG ++ +++V++GE+AIL+ +EI+EL + W
Sbjct: 895 FKGTVEELAPNQYVISGEVAILNSTTIEISELPIRTW 931
Score = 199 (75.1 bits), Expect = 1.6e-244, Sum P(8) = 1.6e-244
Identities = 39/61 (63%), Positives = 47/61 (77%)
Query: 396 QMAKTLIDIGVRL--GGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGST 453
Q+ L+D+ + GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ SFGST
Sbjct: 332 QIVTKLVDVVKKKNKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQVKSFGST 391
Query: 454 C 454
C
Sbjct: 392 C 392
Score = 169 (64.5 bits), Expect = 1.6e-244, Sum P(8) = 1.6e-244
Identities = 34/96 (35%), Positives = 54/96 (56%)
Query: 809 HDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERK 868
+D++ K K Q E + E + ++ ++ D ++YLL M W LT E+K
Sbjct: 1082 YDSDPVKAWKEAQQKVPDEEENEESDSEKETEKSDSATDSGPTFNYLLDMPLWYLTKEKK 1141
Query: 869 NELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
+EL K R++K EL LK+K+P+DLW +DL A E+
Sbjct: 1142 DELCKLRNEKEQELETLKRKSPSDLWKEDLAAFVEE 1177
Score = 52 (23.4 bits), Expect = 1.6e-244, Sum P(8) = 1.6e-244
Identities = 36/135 (26%), Positives = 50/135 (37%)
Query: 1486 TEESKSEAVNSEESKSEAANPIESKQT--VKTKESKLETVNISAPKPQASSTKNASNEDF 1543
TEE K+EA + K ++ N S Q ++ + KL +P + TK + F
Sbjct: 1224 TEEMKAEAEKKIKKKIKSENTEGSPQEDGMEMESQKLRLEKKQKREP-VTKTKKQTTLPF 1282
Query: 1544 LGEFYNKSR---LHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITED-EDL 1599
K R S M S + REK R A K+ L ED D
Sbjct: 1283 KPIKKAKKRNPWSDSESDMSSNESNFDVPPREKES---RRAAAKTKFTMDLDSDEDFSDF 1339
Query: 1600 EETFSDNPSPSEPEP 1614
+E D+ PS P
Sbjct: 1340 DEDTQDDFVPSNASP 1354
Score = 43 (20.2 bits), Expect = 1.4e-243, Sum P(8) = 1.4e-243
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 1133 KAESRKRTQTSQGTESEERKGHLRRWRRKEEESTQT 1168
K+E+ + + G E E +K L + ++K E T+T
Sbjct: 1240 KSENTEGSPQEDGMEMESQKLRLEK-KQKREPVTKT 1274
Score = 41 (19.5 bits), Expect = 2.3e-243, Sum P(8) = 2.3e-243
Identities = 8/31 (25%), Positives = 20/31 (64%)
Query: 1121 PGWESNL--RPSADKAESRKRTQTSQGTESE 1149
P +S++ +P+A K ++R++ + S +S+
Sbjct: 1447 PDLDSDVSKKPNAPKTKTRRKRKASSSDDSD 1477
Score = 41 (19.5 bits), Expect = 9.9e-231, Sum P(7) = 9.9e-231
Identities = 8/36 (22%), Positives = 21/36 (58%)
Query: 810 DNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEE 845
+N PQ+ G ++E Q+ + + + E ++T+++
Sbjct: 1242 ENTEGSPQEDGMEMESQKLRLEKKQKREPVTKTKKQ 1277
Score = 41 (19.5 bits), Expect = 5.6e-57, Sum P(6) = 5.6e-57
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 308 EDGDPVKIIYEN---VNPRWEVAIAP 330
+D +K +Y++ V P W + I P
Sbjct: 821 KDDHTLKFLYDDNQRVEPEWYIPIIP 846
Score = 38 (18.4 bits), Expect = 3.0e-200, Sum P(5) = 3.0e-200
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 2057 FQNNQEMETFLKQLAGEV 2074
F+ N + E + QLAG V
Sbjct: 734 FKRNDKREVKVAQLAGSV 751
Score = 37 (18.1 bits), Expect = 1.6e-244, Sum P(8) = 1.6e-244
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 1086 DTMPSAAGRRVEPK 1099
+ +PS +G+RV P+
Sbjct: 1209 EILPSPSGKRVIPR 1222
Score = 37 (18.1 bits), Expect = 6.6e-88, Sum P(6) = 6.6e-88
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYND 181
LT + + K+ G+ ++G T YND
Sbjct: 665 LTHFMEDRRQRKLLGLPDDYLYGQATTYLTYND 697
>MGI|MGI:98790 [details] [associations]
symbol:Top2a "topoisomerase (DNA) II alpha" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=ISO] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003916 "DNA
topoisomerase activity" evidence=ISO] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISO;IGI;IDA] [GO:0005080 "protein kinase C binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006200 "ATP catabolic process"
evidence=IGI;IDA] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=ISO;IDA] [GO:0006266
"DNA ligation" evidence=ISO] [GO:0006312 "mitotic recombination"
evidence=IBA] [GO:0006974 "response to DNA damage stimulus"
evidence=ISO] [GO:0007059 "chromosome segregation"
evidence=ISO;IMP;IDA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] [GO:0008144 "drug binding" evidence=ISO] [GO:0008301
"DNA binding, bending" evidence=ISO] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISO] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0019899 "enzyme binding" evidence=ISO]
[GO:0030261 "chromosome condensation" evidence=IMP] [GO:0030263
"apoptotic chromosome condensation" evidence=ISO] [GO:0040016
"embryonic cleavage" evidence=IMP] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0042826 "histone
deacetylase binding" evidence=ISO] [GO:0043065 "positive regulation
of apoptotic process" evidence=ISO] [GO:0043130 "ubiquitin binding"
evidence=ISO] [GO:0043234 "protein complex" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=ISO]
[GO:0043566 "structure-specific DNA binding" evidence=ISO]
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IBA]
[GO:0045070 "positive regulation of viral genome replication"
evidence=ISO] [GO:0045870 "positive regulation of retroviral genome
replication" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 MGI:MGI:98790 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005654 GO:GO:0005730 GO:GO:0005814 GO:GO:0042493
GO:GO:0000287 GO:GO:0008144 GO:GO:0007568 GO:GO:0043565
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0006261 GO:GO:0008301 GO:GO:0043065 GO:GO:0030263
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0030261 GO:GO:0006266
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0009330 GO:GO:0070683
GO:GO:0000712 GO:GO:0071107 EMBL:AL591067 GO:GO:0000795
GO:GO:0006265 GO:GO:0043566 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164 CTD:7153
HOGENOM:HOG000216693 HOVERGEN:HBG052998 OrthoDB:EOG4KWJS0
GO:GO:0045870 EMBL:D12513 EMBL:U01915 IPI:IPI00122223 PIR:JS0703
RefSeq:NP_035753.2 UniGene:Mm.4237 ProteinModelPortal:Q01320
SMR:Q01320 IntAct:Q01320 STRING:Q01320 PhosphoSite:Q01320
PaxDb:Q01320 PRIDE:Q01320 Ensembl:ENSMUST00000068031 GeneID:21973
KEGG:mmu:21973 UCSC:uc007lid.1 GeneTree:ENSGT00390000016222
InParanoid:Q01320 OMA:MFKQTWM BindingDB:Q01320 ChEMBL:CHEMBL3586
ChiTaRS:TOP2A NextBio:301670 Bgee:Q01320 CleanEx:MM_TOP2A
Genevestigator:Q01320 GermOnline:ENSMUSG00000020914 Uniprot:Q01320
Length = 1528
Score = 717 (257.5 bits), Expect = 3.7e-244, Sum P(8) = 3.7e-244
Identities = 129/167 (77%), Positives = 153/167 (91%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+PKL+DANDAG++NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+
Sbjct: 437 IPKLDDANDAGSRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREAS 496
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
HKQI+ENAEINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFI
Sbjct: 497 HKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFI 556
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN 621
HHNWP+LLR FLEEFITPI+K +K ++E++FYSLPEFEEWK T N
Sbjct: 557 HHNWPSLLRHRFLEEFITPIVKVSKNKQEIAFYSLPEFEEWKSSTPN 603
Score = 702 (252.2 bits), Expect = 3.7e-244, Sum P(8) = 3.7e-244
Identities = 136/203 (66%), Positives = 159/203 (78%)
Query: 158 EDKVTGV-VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKK 216
E KV + VP +IFG LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VET+ EYKK
Sbjct: 128 EHKVEKIYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKK 187
Query: 217 SFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
FKQ W DNM + E+K S +D+T ITF PDL+KFKM SLDKD+V L+ RRAYD A
Sbjct: 188 MFKQTWMDNMGRAGDMELKPFSGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAG 247
Query: 277 STKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
STKDVKVFLNG LPVK F+ YV LY D+ DE G+ +K+I+E VNPRWEV + S+RGF
Sbjct: 248 STKDVKVFLNGNSLPVKGFRSYVDLYLKDKVDETGNSLKVIHEQVNPRWEVCLTMSERGF 307
Query: 336 QQVSFVNSIATTKGGRHVDAVVD 358
QQ+SFVNSIAT+KGGRHVD V D
Sbjct: 308 QQISFVNSIATSKGGRHVDYVAD 330
Score = 532 (192.3 bits), Expect = 3.7e-244, Sum P(8) = 3.7e-244
Identities = 100/151 (66%), Positives = 123/151 (81%)
Query: 15 NGNGPSPKKKTPANK--MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNH 72
N N KKK K +S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + +
Sbjct: 10 NENMLMNKKKNEDGKKRLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG- 68
Query: 73 MERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVE 132
+ RE+T+VPGLYKIFDEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVE
Sbjct: 69 INYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNVISIWNNGKGIPVVE 128
Query: 133 HKDEKMFVPTMIFGHLLTSSNYNDEEDKVTG 163
HK EK++VP +IFG LLTSSNY+D+E KVTG
Sbjct: 129 HKVEKIYVPALIFGQLLTSSNYDDDEKKVTG 159
Score = 353 (129.3 bits), Expect = 3.7e-244, Sum P(8) = 3.7e-244
Identities = 61/97 (62%), Positives = 79/97 (81%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 834 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEEPLPMLPSYKN 893
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
FKG I+ +++V+NGE+AILD +EI+EL + W
Sbjct: 894 FKGTIEELASNQYVINGEVAILDSTTIEISELPIRTW 930
Score = 201 (75.8 bits), Expect = 3.7e-244, Sum P(8) = 3.7e-244
Identities = 39/61 (63%), Positives = 47/61 (77%)
Query: 396 QMAKTLIDIGVRL--GGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGST 453
Q+ L+D+ + GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ SFGST
Sbjct: 331 QIVSKLVDVVKKKNKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQAKSFGST 390
Query: 454 C 454
C
Sbjct: 391 C 391
Score = 171 (65.3 bits), Expect = 3.7e-244, Sum P(8) = 3.7e-244
Identities = 36/96 (37%), Positives = 56/96 (58%)
Query: 809 HDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERK 868
+D++ K K Q E + E + + + S + E P ++YLL M W LT E+K
Sbjct: 1081 YDSDPVKAWKEAQQKVPDEEENEESDTETSTSDSAAEAGPT--FNYLLDMPLWYLTKEKK 1138
Query: 869 NELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
+EL K+R++K ELN LK+K+P+DLW +DL E+
Sbjct: 1139 DELCKQRNEKEQELNTLKQKSPSDLWKEDLAVFIEE 1174
Score = 42 (19.8 bits), Expect = 3.7e-244, Sum P(8) = 3.7e-244
Identities = 28/129 (21%), Positives = 45/129 (34%)
Query: 1086 DTMPSAAGRRVEPKYXXXXXXXXXXXXXXXXXXV-LPGW--ESNLRPSADKAESRKRTQT 1142
D +PS G+RV P+ + G E P + + K+ +
Sbjct: 1207 DVLPSPRGKRVIPQVTVEMKAEAEKKIRKKIKSENVEGTPAEDGAEPGSLRQRIEKKQKK 1266
Query: 1143 SQGTESEERKGH--LRRWRRKEEESTQTVQVELREGVNISAP---KPQASSTKNA----- 1192
G + + +++ R+K S V E N+ P K Q S+ A
Sbjct: 1267 EPGAKKQTTLPFKPVKKGRKKNPWSDSESDVSSNES-NVDVPPRQKEQRSAAAKAKFTVD 1325
Query: 1193 --SNEDFLG 1199
S+EDF G
Sbjct: 1326 LDSDEDFSG 1334
Score = 39 (18.8 bits), Expect = 3.7e-244, Sum P(8) = 3.7e-244
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 1506 PIESKQTVKTKESKLETVNISAP-KPQASSTKNASNEDFLGE 1546
P +K+ +KT+ S + V++ + K ++ DF E
Sbjct: 1358 PKNTKKALKTQGSSMSVVDLESDVKDSVPASPGVPAADFPAE 1399
Score = 39 (18.8 bits), Expect = 2.1e-158, Sum P(7) = 2.1e-158
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 399 KTLIDIGVRLGGMALKPFQVKNHIWI 424
+T +D R G M LKPF +++ I
Sbjct: 191 QTWMDNMGRAGDMELKPFSGEDYTCI 216
Score = 38 (18.4 bits), Expect = 3.9e-199, Sum P(5) = 3.9e-199
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 2057 FQNNQEMETFLKQLAGEV 2074
F+ N + E + QLAG V
Sbjct: 733 FKRNDKREVKVAQLAGSV 750
Score = 38 (18.4 bits), Expect = 6.2e-55, Sum P(5) = 6.2e-55
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 308 EDGDPVKIIYEN---VNPRWEVAIAP 330
+D ++ +Y++ V P W + I P
Sbjct: 820 KDDHTLRFLYDDNQRVEPEWYIPIIP 845
Score = 37 (18.1 bits), Expect = 2.3e-230, Sum P(7) = 2.3e-230
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 1486 TEESKSEAVNSEESKSEAANPIESK 1510
T+E K E K + N ++ K
Sbjct: 1134 TKEKKDELCKQRNEKEQELNTLKQK 1158
Score = 37 (18.1 bits), Expect = 8.8e-129, Sum P(4) = 8.8e-129
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 587 LEEFITPIIKATKAREELSF 606
LE+ I P K+ +AR+ + +
Sbjct: 1498 LEDTIAPRAKSDRARKPIKY 1517
>UNIPROTKB|J9PAY8 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9615 "Canis
lupus familiaris" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222 OMA:MFKQTWM
EMBL:AAEX03006463 Ensembl:ENSCAFT00000046104 Uniprot:J9PAY8
Length = 1541
Score = 712 (255.7 bits), Expect = 2.9e-243, Sum P(7) = 2.9e-243
Identities = 129/167 (77%), Positives = 152/167 (91%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+PKL+DANDAG +NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+
Sbjct: 447 IPKLDDANDAGGRNSNECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREAS 506
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
HKQI+ENAEINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFI
Sbjct: 507 HKQIMENAEINNIIKIVGLQYKKNYDDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFI 566
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN 621
HHNWP+LLR FLEEFITPI+K +K ++E++FYSLPEFEEWK T N
Sbjct: 567 HHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPN 613
Score = 702 (252.2 bits), Expect = 2.9e-243, Sum P(7) = 2.9e-243
Identities = 134/203 (66%), Positives = 161/203 (79%)
Query: 158 EDKVTGV-VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKK 216
E KV + VP +IFG LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VET+ EYKK
Sbjct: 138 EHKVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKK 197
Query: 217 SFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
FKQ W DNM + E++ + +D+T ITF PDL+KFKM SLDKD+V L+ RRAYD A
Sbjct: 198 MFKQTWMDNMGRAGEMELRPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAG 257
Query: 277 STKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
STKDVKVFLNG KLPVK F+ YV +Y D+ DE G+P+KII+E VNPRWEV + S++GF
Sbjct: 258 STKDVKVFLNGNKLPVKGFRSYVDMYLKDKVDETGNPLKIIHEQVNPRWEVCLTMSEKGF 317
Query: 336 QQVSFVNSIATTKGGRHVDAVVD 358
QQ+SFVNSIAT+KGGRHVD + D
Sbjct: 318 QQISFVNSIATSKGGRHVDYIAD 340
Score = 542 (195.9 bits), Expect = 2.9e-243, Sum P(7) = 2.9e-243
Identities = 102/153 (66%), Positives = 124/153 (81%)
Query: 12 VQQNGNGPSPKKKTPANK-MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRET 70
V +N KK A K +S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + +
Sbjct: 18 VNENMQISKTKKNEDAKKRLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDI 77
Query: 71 NHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPV 130
M RE+T+VPGLYKIFDEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPV
Sbjct: 78 G-MNYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPV 136
Query: 131 VEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTG 163
VEHK EKM+VP +IFG LLTSSNY+D+E KVTG
Sbjct: 137 VEHKVEKMYVPALIFGQLLTSSNYDDDEKKVTG 169
Score = 338 (124.0 bits), Expect = 2.9e-243, Sum P(7) = 2.9e-243
Identities = 59/97 (60%), Positives = 79/97 (81%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 844 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRLMDGEEPLPMLPSYKN 903
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
F+G I+ +++V++GE+AIL+ +EI+EL V W
Sbjct: 904 FRGTIEELAPNQYVISGEVAILNSTTIEISELPVRTW 940
Score = 199 (75.1 bits), Expect = 2.9e-243, Sum P(7) = 2.9e-243
Identities = 39/61 (63%), Positives = 47/61 (77%)
Query: 396 QMAKTLIDIGVRL--GGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGST 453
Q+ L+D+ + GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ SFGST
Sbjct: 341 QIVTKLVDVVKKKNKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQVKSFGST 400
Query: 454 C 454
C
Sbjct: 401 C 401
Score = 171 (65.3 bits), Expect = 2.9e-243, Sum P(7) = 2.9e-243
Identities = 34/96 (35%), Positives = 53/96 (55%)
Query: 809 HDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERK 868
+D++ K K Q E + E +++ ++ D ++YLL M W LT E+K
Sbjct: 1091 YDSDPVKAWKEAQQKVPDEEENEESDNENEAEKSDSVRDSGPTFNYLLDMPLWYLTKEKK 1150
Query: 869 NELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
+EL K R++K EL LK+K+PTDLW +DL E+
Sbjct: 1151 DELCKLRNEKEQELETLKRKSPTDLWKEDLATFVEE 1186
Score = 47 (21.6 bits), Expect = 3.4e-243, Sum P(8) = 3.4e-243
Identities = 33/124 (26%), Positives = 50/124 (40%)
Query: 1486 TEESKSEAV--NSEESKSE--AANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNE 1541
T E K+EA N ++ K+E +P E ++ + +LE P + TK +
Sbjct: 1233 TIEMKAEAEKKNKKKIKNENTEGSPQEESIEIEGLKQRLEKKQKREP---GTKTKKQTTL 1289
Query: 1542 DFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEE 1601
F K R + M NE D R +E R+ T T D DL++
Sbjct: 1290 PFKPIKKGKKRNPWSDSESDMSS---NE--SNFDVPPREVEP-RRAATKTKFTVDLDLDD 1343
Query: 1602 TFSD 1605
+FSD
Sbjct: 1344 SFSD 1347
Score = 47 (21.6 bits), Expect = 8.5e-231, Sum P(6) = 8.5e-231
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 770 AEKDEVHPGPGRKSHPRPIAPKS 792
AE + V+P P +K + IAPKS
Sbjct: 1411 AETEIVNPLPKKKVDVKKIAPKS 1433
Score = 43 (20.2 bits), Expect = 9.0e-243, Sum P(8) = 9.0e-243
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 1275 RGIEAIRKWKTSLGITEDEDLEETFSD 1301
R +E R+ T T D DL+++FSD
Sbjct: 1322 REVEP-RRAATKTKFTVDLDLDDSFSD 1347
Score = 42 (19.8 bits), Expect = 5.6e-56, Sum P(6) = 5.6e-56
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 308 EDGDPVKIIYEN---VNPRWEVAIAP 330
+D +K +Y++ V P W + I P
Sbjct: 830 KDDQTLKFLYDDNQRVEPEWYIPIIP 855
Score = 41 (19.5 bits), Expect = 2.9e-243, Sum P(7) = 2.9e-243
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 1500 KSEAANPIESKQTVKTKESKLETVNI 1525
K + A +E + V+TKE + E + +
Sbjct: 1177 KEDLATFVEELEAVETKEKQEEQIGL 1202
Score = 41 (19.5 bits), Expect = 7.8e-230, Sum P(7) = 7.8e-230
Identities = 14/73 (19%), Positives = 34/73 (46%)
Query: 774 EVHPGP-GRKSHPRPIAPKSYKXXXXXXXXXXXXVFHDNELAKPQKTGPQLERQERQAAE 832
EV P P G++ PR + + + ++N PQ+ ++E +++ +
Sbjct: 1218 EVLPSPCGKRVIPRV----TIEMKAEAEKKNKKKIKNENTEGSPQEESIEIEGLKQRLEK 1273
Query: 833 GEDDEAGSQTQEE 845
+ E G++T+++
Sbjct: 1274 KQKREPGTKTKKQ 1286
Score = 38 (18.4 bits), Expect = 3.4e-243, Sum P(8) = 3.4e-243
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 1082 SSLDDTMPSAAGRRVEPK 1099
+ + + +PS G+RV P+
Sbjct: 1214 TQMAEVLPSPCGKRVIPR 1231
Score = 38 (18.4 bits), Expect = 2.3e-199, Sum P(5) = 2.3e-199
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 2057 FQNNQEMETFLKQLAGEV 2074
F+ N + E + QLAG V
Sbjct: 743 FKRNDKREVKVAQLAGSV 760
Score = 37 (18.1 bits), Expect = 3.3e-229, Sum P(7) = 3.3e-229
Identities = 18/60 (30%), Positives = 24/60 (40%)
Query: 886 KKKAPTDLWSDDLDALREKDKIHPCPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSS 945
+K AP + DLDA KD + P G+ LA P +V + P SS
Sbjct: 1381 QKSAPPVM---DLDADDAKDSV-PLSPGSTADFLAETEIVNPLPKKKVDVKKIAPKSQSS 1436
Score = 37 (18.1 bits), Expect = 1.4e-86, Sum P(6) = 1.4e-86
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYND 181
LT + + K+ G+ ++G T YND
Sbjct: 674 LTHFMEDRRQRKLLGLPEDYLYGQTTTYLTYND 706
>UNIPROTKB|F1Q2M4 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9615 "Canis
lupus familiaris" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222 EMBL:AAEX03006463
Ensembl:ENSCAFT00000025539 Uniprot:F1Q2M4
Length = 1533
Score = 712 (255.7 bits), Expect = 3.1e-243, Sum P(8) = 3.1e-243
Identities = 129/167 (77%), Positives = 152/167 (91%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+PKL+DANDAG +NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+
Sbjct: 438 IPKLDDANDAGGRNSNECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREAS 497
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
HKQI+ENAEINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFI
Sbjct: 498 HKQIMENAEINNIIKIVGLQYKKNYDDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFI 557
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN 621
HHNWP+LLR FLEEFITPI+K +K ++E++FYSLPEFEEWK T N
Sbjct: 558 HHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPN 604
Score = 702 (252.2 bits), Expect = 3.1e-243, Sum P(8) = 3.1e-243
Identities = 134/203 (66%), Positives = 161/203 (79%)
Query: 158 EDKVTGV-VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKK 216
E KV + VP +IFG LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VET+ EYKK
Sbjct: 129 EHKVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKK 188
Query: 217 SFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
FKQ W DNM + E++ + +D+T ITF PDL+KFKM SLDKD+V L+ RRAYD A
Sbjct: 189 MFKQTWMDNMGRAGEMELRPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAG 248
Query: 277 STKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
STKDVKVFLNG KLPVK F+ YV +Y D+ DE G+P+KII+E VNPRWEV + S++GF
Sbjct: 249 STKDVKVFLNGNKLPVKGFRSYVDMYLKDKVDETGNPLKIIHEQVNPRWEVCLTMSEKGF 308
Query: 336 QQVSFVNSIATTKGGRHVDAVVD 358
QQ+SFVNSIAT+KGGRHVD + D
Sbjct: 309 QQISFVNSIATSKGGRHVDYIAD 331
Score = 543 (196.2 bits), Expect = 3.1e-243, Sum P(8) = 3.1e-243
Identities = 104/159 (65%), Positives = 126/159 (79%)
Query: 6 SDFDPDVQQNGNGPSPKKKTPANK-MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMW 64
S P V +N KK A K +S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW
Sbjct: 4 SPLQP-VNENMQISKTKKNEDAKKRLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMW 62
Query: 65 LMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNN 124
+ + + M RE+T+VPGLYKIFDEILVNA DNKQRDPKM+CI++T++ E N IS+WNN
Sbjct: 63 VYDEDIG-MNYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNN 121
Query: 125 GKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTG 163
GKGIPVVEHK EKM+VP +IFG LLTSSNY+D+E KVTG
Sbjct: 122 GKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEKKVTG 160
Score = 338 (124.0 bits), Expect = 3.1e-243, Sum P(8) = 3.1e-243
Identities = 59/97 (60%), Positives = 79/97 (81%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 835 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRLMDGEEPLPMLPSYKN 894
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
F+G I+ +++V++GE+AIL+ +EI+EL V W
Sbjct: 895 FRGTIEELAPNQYVISGEVAILNSTTIEISELPVRTW 931
Score = 199 (75.1 bits), Expect = 3.1e-243, Sum P(8) = 3.1e-243
Identities = 39/61 (63%), Positives = 47/61 (77%)
Query: 396 QMAKTLIDIGVRL--GGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGST 453
Q+ L+D+ + GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ SFGST
Sbjct: 332 QIVTKLVDVVKKKNKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQVKSFGST 391
Query: 454 C 454
C
Sbjct: 392 C 392
Score = 171 (65.3 bits), Expect = 3.1e-243, Sum P(8) = 3.1e-243
Identities = 34/96 (35%), Positives = 53/96 (55%)
Query: 809 HDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERK 868
+D++ K K Q E + E +++ ++ D ++YLL M W LT E+K
Sbjct: 1083 YDSDPVKAWKEAQQKVPDEEENEESDNENEAEKSDSVRDSGPTFNYLLDMPLWYLTKEKK 1142
Query: 869 NELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
+EL K R++K EL LK+K+PTDLW +DL E+
Sbjct: 1143 DELCKLRNEKEQELETLKRKSPTDLWKEDLATFVEE 1178
Score = 47 (21.6 bits), Expect = 6.1e-231, Sum P(6) = 6.1e-231
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 770 AEKDEVHPGPGRKSHPRPIAPKS 792
AE + V+P P +K + IAPKS
Sbjct: 1403 AETEIVNPLPKKKVDVKKIAPKS 1425
Score = 43 (20.2 bits), Expect = 3.1e-243, Sum P(8) = 3.1e-243
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 1579 RGIEAIRKWKTSLGITEDEDLEETFSD 1605
R +E R+ T T D DL+++FSD
Sbjct: 1314 REVEP-RRAATKTKFTVDLDLDDSFSD 1339
Score = 43 (20.2 bits), Expect = 6.4e-243, Sum P(8) = 6.4e-243
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 1275 RGIEAIRKWKTSLGITEDEDLEETFSD 1301
R +E R+ T T D DL+++FSD
Sbjct: 1314 REVEP-RRAATKTKFTVDLDLDDSFSD 1339
Score = 42 (19.8 bits), Expect = 2.3e-142, Sum P(7) = 2.3e-142
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 501 FPLRGKLLNVREATHKQIL--ENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTD 558
F LR K +R+ +L E+A++NN + + + K VE+ +++I
Sbjct: 1023 FELRLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIVENKPKKELIKVLIQRG 1082
Query: 559 QDQD 562
D D
Sbjct: 1083 YDSD 1086
Score = 42 (19.8 bits), Expect = 6.6e-56, Sum P(7) = 6.6e-56
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 308 EDGDPVKIIYEN---VNPRWEVAIAP 330
+D +K +Y++ V P W + I P
Sbjct: 821 KDDQTLKFLYDDNQRVEPEWYIPIIP 846
Score = 41 (19.5 bits), Expect = 3.1e-243, Sum P(8) = 3.1e-243
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 1500 KSEAANPIESKQTVKTKESKLETVNI 1525
K + A +E + V+TKE + E + +
Sbjct: 1169 KEDLATFVEELEAVETKEKQEEQIGL 1194
Score = 39 (18.8 bits), Expect = 9.0e-230, Sum P(7) = 9.0e-230
Identities = 7/37 (18%), Positives = 22/37 (59%)
Query: 809 HDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEE 845
++N PQ+ ++E +++ + + E G++T+++
Sbjct: 1242 NENTEGSPQEESIEIEGLKQRLEKKQKREPGTKTKKQ 1278
Score = 38 (18.4 bits), Expect = 6.4e-243, Sum P(8) = 6.4e-243
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 1082 SSLDDTMPSAAGRRVEPK 1099
+ + + +PS G+RV P+
Sbjct: 1206 TQMAEVLPSPCGKRVIPR 1223
Score = 38 (18.4 bits), Expect = 1.7e-199, Sum P(5) = 1.7e-199
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 2057 FQNNQEMETFLKQLAGEV 2074
F+ N + E + QLAG V
Sbjct: 734 FKRNDKREVKVAQLAGSV 751
Score = 37 (18.1 bits), Expect = 3.8e-229, Sum P(7) = 3.8e-229
Identities = 18/60 (30%), Positives = 24/60 (40%)
Query: 886 KKKAPTDLWSDDLDALREKDKIHPCPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSS 945
+K AP + DLDA KD + P G+ LA P +V + P SS
Sbjct: 1373 QKSAPPVM---DLDADDAKDSV-PLSPGSTADFLAETEIVNPLPKKKVDVKKIAPKSQSS 1428
Score = 37 (18.1 bits), Expect = 1.3e-86, Sum P(6) = 1.3e-86
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYND 181
LT + + K+ G+ ++G T YND
Sbjct: 665 LTHFMEDRRQRKLLGLPEDYLYGQTTTYLTYND 697
>UNIPROTKB|O42131 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2-beta" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0003682 "chromatin binding" evidence=IBA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISS;IBA] [GO:0005080 "protein kinase C binding"
evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change"
evidence=ISS;IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] [GO:0042826 "histone deacetylase binding"
evidence=IBA] [GO:0071778 "WINAC complex" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005080 GO:GO:0005654 GO:GO:0003682
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0042826
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0071778 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 HOVERGEN:HBG052998 EMBL:AB007446
IPI:IPI00819818 RefSeq:NP_990413.1 UniGene:Gga.30963
ProteinModelPortal:O42131 SMR:O42131 STRING:O42131 PRIDE:O42131
GeneID:395966 KEGG:gga:395966 CTD:7155 NextBio:20816031
Uniprot:O42131
Length = 1627
Score = 713 (256.0 bits), Expect = 4.9e-243, Sum P(8) = 4.9e-243
Identities = 128/167 (76%), Positives = 154/167 (92%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+PKL+DANDAG K+S+DCTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+
Sbjct: 464 IPKLDDANDAGGKHSLDCTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREAS 523
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
HKQI+ENAEINN++KI+GLQY K Y E +K+LRYG++MIMTDQDQDGSHIKGL+INFI
Sbjct: 524 HKQIMENAEINNIIKIVGLQYKKSYEDPESLKSLRYGKIMIMTDQDQDGSHIKGLLINFI 583
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN 621
HHNWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N
Sbjct: 584 HHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHMEN 630
Score = 693 (249.0 bits), Expect = 4.9e-243, Sum P(8) = 4.9e-243
Identities = 135/203 (66%), Positives = 159/203 (78%)
Query: 158 EDKVTGV-VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKK 216
E KV V VP +IFG LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VET+C EYK
Sbjct: 155 EHKVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKH 214
Query: 217 SFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
SFKQ W +NM K + P+IK DD+T ITF PDL+KFKM +LDKD+V L+TRRAYD A
Sbjct: 215 SFKQTWMNNMMKTSEPKIKHFEGDDYTCITFQPDLSKFKMENLDKDIVSLMTRRAYDLAG 274
Query: 277 STKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
S K VKV LNG+KLPV F+ YV LY D+ DE G +K+I+E VN RW+V + S++GF
Sbjct: 275 SCKGVKVMLNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHEVVNERWDVCLTLSEKGF 334
Query: 336 QQVSFVNSIATTKGGRHVDAVVD 358
QQ+SFVNSIATTKGGRHVD VVD
Sbjct: 335 QQISFVNSIATTKGGRHVDYVVD 357
Score = 537 (194.1 bits), Expect = 4.9e-243, Sum P(8) = 4.9e-243
Identities = 99/144 (68%), Positives = 120/144 (83%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
S K + KMSVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T
Sbjct: 44 SVNKNDTSKKMSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVT 102
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
+VPGLYKIFDEILVNA DNKQRD M CIKI+++ E+N IS+WNNGKGIPVVEHK EK++
Sbjct: 103 FVPGLYKIFDEILVNAADNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEHKVEKVY 162
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTG 163
VP +IFG LLTSSNY+D+E KVTG
Sbjct: 163 VPALIFGQLLTSSNYDDDEKKVTG 186
Score = 339 (124.4 bits), Expect = 4.9e-243, Sum P(8) = 4.9e-243
Identities = 61/97 (62%), Positives = 78/97 (80%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVLVNGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 861 RVEPEWYIPIIPMVLVNGAEGIGTGWACKLPNYDTREIVNNVRRMLDGLDPHPMLPNYKN 920
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
F+G I G +++VV+GEI ++D + +EITEL V W
Sbjct: 921 FRGTIQELGQNQYVVSGEIFVVDRNTVEITELPVRTW 957
Score = 203 (76.5 bits), Expect = 4.9e-243, Sum P(8) = 4.9e-243
Identities = 35/45 (77%), Positives = 41/45 (91%)
Query: 410 GMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC 454
G+++KPFQVKNHIW+F+NCLI NP+FDSQTKENMTLQ SFGS C
Sbjct: 374 GVSVKPFQVKNHIWVFVNCLIENPSFDSQTKENMTLQPKSFGSKC 418
Score = 174 (66.3 bits), Expect = 4.9e-243, Sum P(8) = 4.9e-243
Identities = 41/90 (45%), Positives = 57/90 (63%)
Query: 824 ERQERQAAEGED-----DEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDK 878
E QE+ AAE ED D+A S + PD ++Y+L M+ WSLT E+ EL+K RD K
Sbjct: 1118 EAQEK-AAEEEDPQNANDDASSASGSTSGPD--FNYILNMSLWSLTKEKVEELIKHRDSK 1174
Query: 879 MTELNILKKKAPTDLWSDDLDA-LREKDKI 907
ELN LK+K+ +DLW +DL A + E +K+
Sbjct: 1175 ERELNDLKRKSASDLWKEDLAAFVEELEKV 1204
Score = 51 (23.0 bits), Expect = 4.9e-243, Sum P(8) = 4.9e-243
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 1084 LDDTMPSAAGRRVEPK 1099
L++TMPS GRR+ P+
Sbjct: 1235 LEETMPSPFGRRIVPQ 1250
Score = 47 (21.6 bits), Expect = 1.1e-44, Sum P(4) = 1.1e-44
Identities = 16/75 (21%), Positives = 28/75 (37%)
Query: 214 YKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKI---TFTPD---LTKFKMTSLDKDMVDLI 267
Y+ + WK+ K E + DD + T PD + + SL K+ V+ +
Sbjct: 1108 YESDPVKAWKEAQEKAAEEEDPQNANDDASSASGSTSGPDFNYILNMSLWSLTKEKVEEL 1167
Query: 268 TRRAYDAAASTKDVK 282
+ D+K
Sbjct: 1168 IKHRDSKERELNDLK 1182
Score = 42 (19.8 bits), Expect = 4.9e-243, Sum P(8) = 4.9e-243
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 1486 TEESKSEAVNSEESKSEA-ANPIESKQTVK----TKESKLETVNIS-----APKPQASST 1535
T++ ++ + EE + ++P KQT K T +K V++ APK + T
Sbjct: 1463 TDDDTTKLDSDEEDSTPVFSSPFAPKQTEKMLSKTVAAKKAKVDVPPKPKRAPKAKKMET 1522
Query: 1536 KNASNEDFLG 1545
N+ ++ G
Sbjct: 1523 VNSDSDSEFG 1532
Score = 42 (19.8 bits), Expect = 1.4e-228, Sum P(7) = 1.4e-228
Identities = 28/134 (20%), Positives = 52/134 (38%)
Query: 811 NELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNE 870
N A KT P+L+R++++ A S T+ K + WS +
Sbjct: 1298 NTAASGTKT-PKLKREKKEPGT-RVRRAPSSTKSSAKKVKKRNP------WSDDESKSES 1349
Query: 871 LLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCPGGNRTRGLALKRQTRYQPS 930
L++ + + + L ++A D D +E+D H N L + + + P
Sbjct: 1350 DLEESEPVIIPRDSLLRRAAADRAKYTFDFSKEEDDAHDDDDANNNNDLD-ELKVKASP- 1407
Query: 931 NRVLTSRDEPMVVS 944
V+ R++ V S
Sbjct: 1408 --VINDREDEFVPS 1419
Score = 42 (19.8 bits), Expect = 5.7e-36, Sum P(5) = 5.7e-36
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 448 GSFGSTCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAV 487
GS G TCV ++ +A K + + + D++K ++V
Sbjct: 20 GSGGLTCVTLFDNQINASKKEESES---VNKNDTSKKMSV 56
Score = 40 (19.1 bits), Expect = 4.3e-56, Sum P(6) = 4.3e-56
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 309 DGDPVKIIYEN---VNPRWEVAIAP 330
D + +K +Y++ V P W + I P
Sbjct: 848 DDNLLKFLYDDNQRVEPEWYIPIIP 872
Score = 39 (18.8 bits), Expect = 2.9e-228, Sum P(7) = 2.9e-228
Identities = 18/71 (25%), Positives = 26/71 (36%)
Query: 835 DDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLW 894
D+E G E D G L E+K + R + + KK + W
Sbjct: 1281 DEEFGGVQAEGGGDDTVNTAASGTKTPKLKREKKEPGTRVRRAPSSTKSSAKKVKKRNPW 1340
Query: 895 SDDLDALREKD 905
SDD ++ E D
Sbjct: 1341 SDD-ESKSESD 1350
Score = 39 (18.8 bits), Expect = 7.6e-44, Sum P(4) = 7.6e-44
Identities = 18/76 (23%), Positives = 34/76 (44%)
Query: 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCS 212
N ND+ +G F ++L S ++ ++KV +L SK E +
Sbjct: 1131 NANDDASSASGSTSGPDFNYILNMSLWSLTKEKVE--------ELIKHRDSK---ERELN 1179
Query: 213 EYK-KSFKQVWKDNMS 227
+ K KS +WK++++
Sbjct: 1180 DLKRKSASDLWKEDLA 1195
Score = 38 (18.4 bits), Expect = 4.0e-198, Sum P(5) = 4.0e-198
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 2057 FQNNQEMETFLKQLAGEV 2074
F+ N + E + QLAG V
Sbjct: 760 FKRNDKREVKVAQLAGSV 777
Score = 38 (18.4 bits), Expect = 4.0e-198, Sum P(5) = 4.0e-198
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 2026 LYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
L+++ EDD +T +K + + F ++
Sbjct: 663 LFRYAGPEDDAAITLAFSKKKIDDRKEWLTNFMEDR 698
Score = 38 (18.4 bits), Expect = 1.1e-106, Sum P(6) = 1.1e-106
Identities = 16/73 (21%), Positives = 30/73 (41%)
Query: 19 PSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWL-------MNRETN 71
PS +T N K + K QL + + G +E I W+ +N++ +
Sbjct: 397 PSFDSQTKENMTLQPKSFGSKCQLSEKFFKAASNCGIIESILN--WVKFKAQTQLNKKCS 454
Query: 72 HMERREITYVPGL 84
++ +I +P L
Sbjct: 455 SVKHSKIKGIPKL 467
Score = 37 (18.1 bits), Expect = 2.0e-141, Sum P(7) = 2.0e-141
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 497 KYGVFPLRGKLLNVREA-THK--QILENAEINNLVKILGLQYSKKYTTVEDM 545
K+ V KL A HK ++ + N++V + KKY TV+D+
Sbjct: 993 KFVVKMTEEKLAQAEAAGLHKVFKLQTSLTCNSMVLFDHMGCLKKYETVQDI 1044
>UNIPROTKB|P41515 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:10029
"Cricetulus griseus" [GO:0000287 "magnesium ion binding"
evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0008301 "DNA binding,
bending" evidence=ISS] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0000287 GO:GO:0008301 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 PROSITE:PS50880 CTD:7153
HOVERGEN:HBG052998 EMBL:L04607 PIR:A44406 RefSeq:NP_001233667.1
ProteinModelPortal:P41515 SMR:P41515 GeneID:100689304
Uniprot:P41515
Length = 1526
Score = 719 (258.2 bits), Expect = 6.1e-243, Sum P(8) = 6.1e-243
Identities = 130/167 (77%), Positives = 153/167 (91%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+PKL+DANDAG++NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+
Sbjct: 437 IPKLDDANDAGSRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREAS 496
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
HKQI+ENAEINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFI
Sbjct: 497 HKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFI 556
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN 621
HHNWP+LLR FLEEFITPI+K +K ++EL+FYSLPEFEEWK T N
Sbjct: 557 HHNWPSLLRHRFLEEFITPIVKVSKNKQELAFYSLPEFEEWKSSTPN 603
Score = 694 (249.4 bits), Expect = 6.1e-243, Sum P(8) = 6.1e-243
Identities = 132/203 (65%), Positives = 160/203 (78%)
Query: 158 EDKVTGV-VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKK 216
E KV + VP +IFG LLTSSNY+D+E KVTGGRNGYGAKLCNIFS++F VET+ EYKK
Sbjct: 128 EHKVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTRFTVETASKEYKK 187
Query: 217 SFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
FKQ W DNM + E+K + +D+T ITF PDL+KFKM SLDKD+V L+ RRAYD A
Sbjct: 188 MFKQTWMDNMGRAGDMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAG 247
Query: 277 STKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
STKDVKVFLNG KLPVK F+ YV +Y D+ DE G+ +K+++E VNPRWEV + S++GF
Sbjct: 248 STKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETGNALKVVHEQVNPRWEVCLTMSEKGF 307
Query: 336 QQVSFVNSIATTKGGRHVDAVVD 358
QQ+SFVNSIAT+KGGRHVD V D
Sbjct: 308 QQISFVNSIATSKGGRHVDYVAD 330
Score = 537 (194.1 bits), Expect = 6.1e-243, Sum P(8) = 6.1e-243
Identities = 100/158 (63%), Positives = 125/158 (79%)
Query: 6 SDFDPDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWL 65
S P V +N K + ++S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+
Sbjct: 4 SPLQP-VNENMQMNKKKNEDAKKRLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWV 62
Query: 66 MNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNG 125
+ + + RE+T+VPGLYKIFDEILVNA DNKQRDPKM+CI++T++ E N IS+WNNG
Sbjct: 63 YDEDVG-INYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNG 121
Query: 126 KGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTG 163
KGIPVVEHK EKM+VP +IFG LLTSSNY+D+E KVTG
Sbjct: 122 KGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEKKVTG 159
Score = 347 (127.2 bits), Expect = 6.1e-243, Sum P(8) = 6.1e-243
Identities = 60/97 (61%), Positives = 79/97 (81%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 834 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRLLDGEEPLPMLPSYKN 893
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
FKG I+ +++V+NGE+AIL+ +EI+EL + W
Sbjct: 894 FKGTIEELASNQYVINGEVAILNSTTIEISELPIRTW 930
Score = 201 (75.8 bits), Expect = 6.1e-243, Sum P(8) = 6.1e-243
Identities = 39/61 (63%), Positives = 47/61 (77%)
Query: 396 QMAKTLIDIGVRL--GGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGST 453
Q+ L+D+ + GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ SFGST
Sbjct: 331 QIVSKLVDVVKKKNKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQAKSFGST 390
Query: 454 C 454
C
Sbjct: 391 C 391
Score = 164 (62.8 bits), Expect = 6.1e-243, Sum P(8) = 6.1e-243
Identities = 32/82 (39%), Positives = 52/82 (63%)
Query: 824 ERQERQAAEGEDDEAGSQTQEE-EDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTEL 882
E Q++ E E++E+ ++ + + ++YLL M W LT E+K+EL K+R++K EL
Sbjct: 1091 EAQQKVPDEEENEESDNENSDSVAESGPTFNYLLDMPLWYLTKEKKDELCKQRNEKEQEL 1150
Query: 883 NILKKKAPTDLWSDDLDALREK 904
N LK K+P+DLW +DL E+
Sbjct: 1151 NTLKNKSPSDLWKEDLAVFIEE 1172
Score = 46 (21.3 bits), Expect = 6.1e-243, Sum P(8) = 6.1e-243
Identities = 19/82 (23%), Positives = 34/82 (41%)
Query: 1120 LPGWESNLRPSADKAESRKRTQTSQGTESEERKGHLRRWRRKEEESTQTVQVELREGVNI 1179
LP L+PS+ + + K+T T + S G +R K +S + E +
Sbjct: 1394 LPADTEQLKPSSKQTVAVKKTAT-KSQSSTSTAGTKKRAVPKGSKSDSALNAHGPEKP-V 1451
Query: 1180 SAPKPQASSTKNASNEDFLGEF 1201
A + K +S++D +F
Sbjct: 1452 PAKAKNSRKRKQSSSDDSDSDF 1473
Score = 41 (19.5 bits), Expect = 1.9e-54, Sum P(6) = 1.9e-54
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 308 EDGDPVKIIYEN---VNPRWEVAIAP 330
+D +K +Y++ V P W + I P
Sbjct: 820 KDDHTLKFLYDDNQRVEPEWYIPIIP 845
Score = 40 (19.1 bits), Expect = 2.6e-242, Sum P(8) = 2.6e-242
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 1124 ESNLRPSADKAESRKRTQTSQGTESEERKGHLRRWRRKEEESTQTVQVEL 1173
E +R K+E+ + T T G E K + + ++KE + Q L
Sbjct: 1227 EKKIRKKI-KSENVEGTPTENGLELGSLKQRIEKKQKKEPGAMTKKQTTL 1275
Score = 39 (18.8 bits), Expect = 5.2e-158, Sum P(7) = 5.2e-158
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 399 KTLIDIGVRLGGMALKPFQVKNHIWI 424
+T +D R G M LKPF +++ I
Sbjct: 191 QTWMDNMGRAGDMELKPFNGEDYTCI 216
Score = 38 (18.4 bits), Expect = 1.7e-230, Sum P(6) = 1.7e-230
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 1486 TEESKSEAVNSEESKSEAANPIESK 1510
T+E K E K + N +++K
Sbjct: 1132 TKEKKDELCKQRNEKEQELNTLKNK 1156
Score = 38 (18.4 bits), Expect = 4.7e-199, Sum P(5) = 4.7e-199
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 2057 FQNNQEMETFLKQLAGEV 2074
F+ N + E + QLAG V
Sbjct: 733 FKRNDKREVKVAQLAGSV 750
Score = 37 (18.1 bits), Expect = 6.1e-243, Sum P(8) = 6.1e-243
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 1082 SSLDDTMPSAAGRRVEPK 1099
+ + + +PS G+RV P+
Sbjct: 1200 AQMSEVLPSPHGKRVIPQ 1217
Score = 37 (18.1 bits), Expect = 4.5e-86, Sum P(6) = 4.5e-86
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYND 181
LT + + K+ G+ ++G T YND
Sbjct: 664 LTHFMEDRRQRKLLGLPEDYLYGQTTTYLTYND 696
Score = 37 (18.1 bits), Expect = 3.6e-43, Sum P(3) = 3.6e-43
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 204 KFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSG 237
K V + + S+ K Q ++ ++ + P KSG
Sbjct: 1475 KVVSKVAASKKSKGENQDFRVDLDETMVPRAKSG 1508
>UNIPROTKB|O46374 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:9823 "Sus
scrofa" [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISS] [GO:0000287 "magnesium ion binding" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045870 "positive regulation of
retroviral genome replication" evidence=IEA] [GO:0043130 "ubiquitin
binding" evidence=IEA] [GO:0043065 "positive regulation of
apoptotic process" evidence=IEA] [GO:0042826 "histone deacetylase
binding" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0040016 "embryonic cleavage"
evidence=IEA] [GO:0030263 "apoptotic chromosome condensation"
evidence=IEA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IEA] [GO:0008144 "drug binding"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006266 "DNA ligation" evidence=IEA] [GO:0005814 "centriole"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005080 "protein kinase C binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059 GO:GO:0005654
GO:GO:0005730 GO:GO:0005814 GO:GO:0000287 GO:GO:0008144
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0008301 GO:GO:0043065 GO:GO:0030263 Gene3D:3.30.565.10
SUPFAM:SSF55874 GO:GO:0000793 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 eggNOG:COG0187 Gene3D:3.40.50.670
PROSITE:PS50880 KO:K03164 HOGENOM:HOG000216693 HOVERGEN:HBG052998
OrthoDB:EOG4KWJS0 GO:GO:0045870 GeneTree:ENSGT00390000016222
OMA:MFKQTWM EMBL:AB009387 RefSeq:NP_999049.1 UniGene:Ssc.14506
ProteinModelPortal:O46374 SMR:O46374 STRING:O46374 PRIDE:O46374
Ensembl:ENSSSCT00000019023 GeneID:396917 KEGG:ssc:396917
CTD:100038293 Uniprot:O46374
Length = 1533
Score = 714 (256.4 bits), Expect = 6.2e-243, Sum P(9) = 6.2e-243
Identities = 129/167 (77%), Positives = 152/167 (91%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+PKL+DANDAG +NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+
Sbjct: 438 IPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREAS 497
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
HKQI+ENAEINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFI
Sbjct: 498 HKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFI 557
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN 621
HHNWP+LLR FLEEFITPI+K +K ++E++FYSLPEFEEWK T N
Sbjct: 558 HHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPN 604
Score = 701 (251.8 bits), Expect = 6.2e-243, Sum P(9) = 6.2e-243
Identities = 137/203 (67%), Positives = 160/203 (78%)
Query: 158 EDKVTGV-VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKK 216
E KV + VP +IFG LLTSSNY+DEE KVTGGRNGYGAKLCNIFS+KF VET+ EYKK
Sbjct: 129 EHKVEKMYVPALIFGQLLTSSNYDDEEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKK 188
Query: 217 SFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
FKQ W DNM + E+K + +D+T ITF PDL+KFKM SLDKD+V L+ RRAYD A
Sbjct: 189 MFKQTWMDNMGRAGEMELKPFNGEDYTCITFHPDLSKFKMQSLDKDIVALMVRRAYDIAG 248
Query: 277 STKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
STKDVKVFLNG KLPVK F+ YV LY D+ DE G+P+KII+E VN RWEV + S++GF
Sbjct: 249 STKDVKVFLNGNKLPVKGFRSYVDLYLKDKVDETGNPLKIIHEQVNHRWEVCLTMSEKGF 308
Query: 336 QQVSFVNSIATTKGGRHVDAVVD 358
QQ+SFVNSIAT+KGGRHVD V D
Sbjct: 309 QQISFVNSIATSKGGRHVDYVAD 331
Score = 544 (196.6 bits), Expect = 6.2e-243, Sum P(9) = 6.2e-243
Identities = 104/159 (65%), Positives = 126/159 (79%)
Query: 6 SDFDPDVQQNGNGPSPKKKTPANK-MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMW 64
S P V +N KK A K +S+E+IYQKK+QLEHILLRPDTYIGSVE +T+ MW
Sbjct: 4 SPLQP-VNENMQVNKTKKNEEAKKRLSIERIYQKKTQLEHILLRPDTYIGSVESVTQQMW 62
Query: 65 LMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNN 124
+ + + + RE+T+VPGLYKIFDEILVNA DNKQRDPKM+CI++T++ E N IS+WNN
Sbjct: 63 VYDEDIG-INYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNN 121
Query: 125 GKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTG 163
GKGIPVVEHK EKM+VP +IFG LLTSSNY+DEE KVTG
Sbjct: 122 GKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDEEKKVTG 160
Score = 334 (122.6 bits), Expect = 6.2e-243, Sum P(9) = 6.2e-243
Identities = 58/97 (59%), Positives = 78/97 (80%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+ ++ GE+PLPM P YKN
Sbjct: 835 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRLLMDGEEPLPMLPSYKN 894
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
FKG I+ +++V++GE+AIL+ +EI+EL + W
Sbjct: 895 FKGTIEELAPNQYVISGEVAILNSTTIEISELPIRTW 931
Score = 199 (75.1 bits), Expect = 6.2e-243, Sum P(9) = 6.2e-243
Identities = 39/61 (63%), Positives = 47/61 (77%)
Query: 396 QMAKTLIDIGVRL--GGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGST 453
Q+ L+D+ + GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ SFGST
Sbjct: 332 QIVAKLVDVVKKKNKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQVKSFGST 391
Query: 454 C 454
C
Sbjct: 392 C 392
Score = 171 (65.3 bits), Expect = 6.2e-243, Sum P(9) = 6.2e-243
Identities = 34/96 (35%), Positives = 55/96 (57%)
Query: 809 HDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERK 868
+D++ K K Q E + E ++++ ++ D ++YLL M W LT E+K
Sbjct: 1082 YDSDPVKAWKEAQQKVPDEEENEESDNEKEADKSDSVADSGPTFNYLLDMPLWYLTKEKK 1141
Query: 869 NELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
+EL K R++K EL LK+K+P+DLW +DL A E+
Sbjct: 1142 DELCKLRNEKEQELETLKRKSPSDLWKEDLAAFIEE 1177
Score = 63 (27.2 bits), Expect = 2.0e-232, Sum P(6) = 2.0e-232
Identities = 32/114 (28%), Positives = 48/114 (42%)
Query: 809 HDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERK 868
H N+ KPQK+ P + + A + +D+ S + P D+ +T + +K
Sbjct: 1364 HTNKEPKPQKSTPSVS--DFDADDAKDNVPPSPSS----PVADFP---AVTETIKPVSKK 1414
Query: 869 NELLKK---RDDKMTELNILKKKA-PTDLWSD-DLDALREKDKIHPCPGGNRTR 917
N +KK + T KK+A P D DLD+ K P P G R R
Sbjct: 1415 NVTVKKTAAKSQSSTSTTGAKKRAAPKGAKKDPDLDSDVSKKPNPPKPKGRRKR 1468
Score = 48 (22.0 bits), Expect = 2.8e-230, Sum P(8) = 2.8e-230
Identities = 31/141 (21%), Positives = 56/141 (39%)
Query: 774 EVHPGP-GRKSHPRPIAPKSYKXXXXXXXXXXXXVFHDNELAKPQKTGPQLERQERQAAE 832
EV P P G++ PR + + + +N PQ+ G ++E +++ +
Sbjct: 1209 EVLPSPCGKRVIPRV----TVEMKAEAEKKIKKKIKSENTEGSPQEDGMEVEGLKQRLEK 1264
Query: 833 GEDDEAGSQTQEEED-PDKDYDYLLGMTFWS-----LTMERKNELLKKRDDKMTELNILK 886
+ E G++T+++ P K WS ++ + N + R+ K K
Sbjct: 1265 KQKREPGTKTKKQTTLPFKPIKKAKKRNPWSDSESDISSDESNFNVPPRE-KEPRRAAAK 1323
Query: 887 KKAPTDLWSD-DLDALREKDK 906
K DL SD D EK +
Sbjct: 1324 TKFTVDLDSDEDFSDADEKTR 1344
Score = 47 (21.6 bits), Expect = 6.2e-243, Sum P(9) = 6.2e-243
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 2219 KGKPPDQLNNPRPGPSNSTITPGPSNSTLPPGPSNSTLPPGPSN 2262
K + + N P P ST PS S + +PP PS+
Sbjct: 1357 KAETSPKHTNKEPKPQKST----PSVSDFDADDAKDNVPPSPSS 1396
Score = 46 (21.3 bits), Expect = 1.5e-242, Sum P(10) = 1.5e-242
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 1592 GITEDEDLEETFSDNPSPSEPE 1613
G +D DL+ S P+P +P+
Sbjct: 1442 GAKKDPDLDSDVSKKPNPPKPK 1463
Score = 41 (19.5 bits), Expect = 6.2e-243, Sum P(9) = 6.2e-243
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 1133 KAESRKRTQTSQGTESEERKGHLRRWRRKEEESTQT 1168
K+E+ + + G E E K L + ++K E T+T
Sbjct: 1240 KSENTEGSPQEDGMEVEGLKQRLEK-KQKREPGTKT 1274
Score = 41 (19.5 bits), Expect = 1.3e-55, Sum P(8) = 1.3e-55
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 308 EDGDPVKIIYEN---VNPRWEVAIAP 330
+D +K +Y++ V P W + I P
Sbjct: 821 KDDHTLKFLYDDNQRVEPEWYIPIIP 846
Score = 39 (18.8 bits), Expect = 1.5e-242, Sum P(10) = 1.5e-242
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 1511 QTVKTKESKLETVNISAPKPQAS-STKNA 1538
+T+K K TV +A K Q+S ST A
Sbjct: 1406 ETIKPVSKKNVTVKKTAAKSQSSTSTTGA 1434
Score = 38 (18.4 bits), Expect = 6.2e-243, Sum P(9) = 6.2e-243
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 1082 SSLDDTMPSAAGRRVEPK 1099
+ + + +PS G+RV P+
Sbjct: 1205 TQMAEVLPSPCGKRVIPR 1222
Score = 38 (18.4 bits), Expect = 5.4e-242, Sum P(9) = 5.4e-242
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 1288 GITEDEDLEETFSDNPSP 1305
G +D DL+ S P+P
Sbjct: 1442 GAKKDPDLDSDVSKKPNP 1459
Score = 38 (18.4 bits), Expect = 1.1e-199, Sum P(6) = 1.1e-199
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 2057 FQNNQEMETFLKQLAGEV 2074
F+ N + E + QLAG V
Sbjct: 734 FKRNDKREVKVAQLAGSV 751
Score = 38 (18.4 bits), Expect = 4.4e-157, Sum P(9) = 4.4e-157
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 399 KTLIDIGVRLGGMALKPFQVKNHIWI 424
+T +D R G M LKPF +++ I
Sbjct: 192 QTWMDNMGRAGEMELKPFNGEDYTCI 217
Score = 37 (18.1 bits), Expect = 1.5e-85, Sum P(8) = 1.5e-85
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYND 181
LT + + K+ G+ ++G T YND
Sbjct: 665 LTHFMEDRRQRKLLGLPEDYLYGQTTTYLTYND 697
>UNIPROTKB|F1NR58 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222 IPI:IPI00819818
EMBL:AADN02001127 Ensembl:ENSGALT00000037716 ArrayExpress:F1NR58
Uniprot:F1NR58
Length = 1627
Score = 713 (256.0 bits), Expect = 6.3e-243, Sum P(8) = 6.3e-243
Identities = 128/167 (76%), Positives = 154/167 (92%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+PKL+DANDAG K+S+DCTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+
Sbjct: 464 IPKLDDANDAGGKHSLDCTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREAS 523
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
HKQI+ENAEINN++KI+GLQY K Y E +K+LRYG++MIMTDQDQDGSHIKGL+INFI
Sbjct: 524 HKQIMENAEINNIIKIVGLQYKKSYEDPESLKSLRYGKIMIMTDQDQDGSHIKGLLINFI 583
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN 621
HHNWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N
Sbjct: 584 HHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHMEN 630
Score = 692 (248.7 bits), Expect = 6.3e-243, Sum P(8) = 6.3e-243
Identities = 135/203 (66%), Positives = 158/203 (77%)
Query: 158 EDKVTGV-VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKK 216
E KV V VP +IFG LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VET+C EYK
Sbjct: 155 EHKVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKH 214
Query: 217 SFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
SFKQ W +NM K + P+IK DD+T ITF PDL+KFKM LDKD+V L+TRRAYD A
Sbjct: 215 SFKQTWMNNMMKTSEPKIKHFEGDDYTCITFQPDLSKFKMEKLDKDIVSLMTRRAYDLAG 274
Query: 277 STKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
S K VKV LNG+KLPV F+ YV LY D+ DE G +K+I+E VN RW+V + S++GF
Sbjct: 275 SCKGVKVMLNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHEVVNERWDVCLTLSEKGF 334
Query: 336 QQVSFVNSIATTKGGRHVDAVVD 358
QQ+SFVNSIATTKGGRHVD VVD
Sbjct: 335 QQISFVNSIATTKGGRHVDYVVD 357
Score = 537 (194.1 bits), Expect = 6.3e-243, Sum P(8) = 6.3e-243
Identities = 99/144 (68%), Positives = 120/144 (83%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
S K + KMSVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T
Sbjct: 44 SVNKNDTSKKMSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVT 102
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
+VPGLYKIFDEILVNA DNKQRD M CIKI+++ E+N IS+WNNGKGIPVVEHK EK++
Sbjct: 103 FVPGLYKIFDEILVNAADNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEHKVEKVY 162
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTG 163
VP +IFG LLTSSNY+D+E KVTG
Sbjct: 163 VPALIFGQLLTSSNYDDDEKKVTG 186
Score = 339 (124.4 bits), Expect = 6.3e-243, Sum P(8) = 6.3e-243
Identities = 61/97 (62%), Positives = 78/97 (80%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVLVNGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 861 RVEPEWYIPIIPMVLVNGAEGIGTGWACKLPNYDTREIVNNVRRMLDGLDPHPMLPNYKN 920
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
F+G I G +++VV+GEI ++D + +EITEL V W
Sbjct: 921 FRGTIQELGQNQYVVSGEIFVVDRNTVEITELPVRTW 957
Score = 203 (76.5 bits), Expect = 6.3e-243, Sum P(8) = 6.3e-243
Identities = 35/45 (77%), Positives = 41/45 (91%)
Query: 410 GMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC 454
G+++KPFQVKNHIW+F+NCLI NP+FDSQTKENMTLQ SFGS C
Sbjct: 374 GVSVKPFQVKNHIWVFVNCLIENPSFDSQTKENMTLQPKSFGSKC 418
Score = 174 (66.3 bits), Expect = 6.3e-243, Sum P(8) = 6.3e-243
Identities = 41/90 (45%), Positives = 57/90 (63%)
Query: 824 ERQERQAAEGED-----DEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDK 878
E QE+ AAE ED D+A S + PD ++Y+L M+ WSLT E+ EL+K RD K
Sbjct: 1118 EAQEK-AAEEEDPQNANDDASSASGSTSGPD--FNYILNMSLWSLTKEKVEELIKHRDSK 1174
Query: 879 MTELNILKKKAPTDLWSDDLDA-LREKDKI 907
ELN LK+K+ +DLW +DL A + E +K+
Sbjct: 1175 ERELNDLKRKSASDLWKEDLAAFVEELEKV 1204
Score = 51 (23.0 bits), Expect = 6.3e-243, Sum P(8) = 6.3e-243
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 1084 LDDTMPSAAGRRVEPK 1099
L++TMPS GRR+ P+
Sbjct: 1235 LEETMPSPFGRRIVPQ 1250
Score = 47 (21.6 bits), Expect = 1.1e-44, Sum P(4) = 1.1e-44
Identities = 16/75 (21%), Positives = 28/75 (37%)
Query: 214 YKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKI---TFTPD---LTKFKMTSLDKDMVDLI 267
Y+ + WK+ K E + DD + T PD + + SL K+ V+ +
Sbjct: 1108 YESDPVKAWKEAQEKAAEEEDPQNANDDASSASGSTSGPDFNYILNMSLWSLTKEKVEEL 1167
Query: 268 TRRAYDAAASTKDVK 282
+ D+K
Sbjct: 1168 IKHRDSKERELNDLK 1182
Score = 42 (19.8 bits), Expect = 6.3e-243, Sum P(8) = 6.3e-243
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 1486 TEESKSEAVNSEESKSEA-ANPIESKQTVK----TKESKLETVNIS-----APKPQASST 1535
T++ ++ + EE + ++P KQT K T +K V++ APK + T
Sbjct: 1463 TDDDTTKLDSDEEDSTPVFSSPFAPKQTEKMLSKTVAAKKAKVDVPPKPKRAPKAKKMET 1522
Query: 1536 KNASNEDFLG 1545
N+ ++ G
Sbjct: 1523 VNSDSDSEFG 1532
Score = 40 (19.1 bits), Expect = 4.3e-56, Sum P(6) = 4.3e-56
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 309 DGDPVKIIYEN---VNPRWEVAIAP 330
D + +K +Y++ V P W + I P
Sbjct: 848 DDNLLKFLYDDNQRVEPEWYIPIIP 872
Score = 39 (18.8 bits), Expect = 3.6e-228, Sum P(7) = 3.6e-228
Identities = 18/71 (25%), Positives = 26/71 (36%)
Query: 835 DDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLW 894
D+E G E D G L E+K + R + + KK + W
Sbjct: 1281 DEEFGGVQAEGGGDDTVNTAASGTKTPKLKREKKEPGTRVRRAPSSTKSSAKKVKKRNPW 1340
Query: 895 SDDLDALREKD 905
SDD ++ E D
Sbjct: 1341 SDD-ESKSESD 1350
Score = 39 (18.8 bits), Expect = 7.6e-44, Sum P(4) = 7.6e-44
Identities = 18/76 (23%), Positives = 34/76 (44%)
Query: 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCS 212
N ND+ +G F ++L S ++ ++KV +L SK E +
Sbjct: 1131 NANDDASSASGSTSGPDFNYILNMSLWSLTKEKVE--------ELIKHRDSK---ERELN 1179
Query: 213 EYK-KSFKQVWKDNMS 227
+ K KS +WK++++
Sbjct: 1180 DLKRKSASDLWKEDLA 1195
Score = 38 (18.4 bits), Expect = 5.0e-198, Sum P(5) = 5.0e-198
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 2057 FQNNQEMETFLKQLAGEV 2074
F+ N + E + QLAG V
Sbjct: 760 FKRNDKREVKVAQLAGSV 777
Score = 38 (18.4 bits), Expect = 5.0e-198, Sum P(5) = 5.0e-198
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 2026 LYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
L+++ EDD +T +K + + F ++
Sbjct: 663 LFRYAGPEDDAAITLAFSKKKIDDRKEWLTNFMEDR 698
Score = 38 (18.4 bits), Expect = 1.1e-106, Sum P(6) = 1.1e-106
Identities = 16/73 (21%), Positives = 30/73 (41%)
Query: 19 PSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWL-------MNRETN 71
PS +T N K + K QL + + G +E I W+ +N++ +
Sbjct: 397 PSFDSQTKENMTLQPKSFGSKCQLSEKFFKAASNCGIIESILN--WVKFKAQTQLNKKCS 454
Query: 72 HMERREITYVPGL 84
++ +I +P L
Sbjct: 455 SVKHSKIKGIPKL 467
Score = 37 (18.1 bits), Expect = 2.6e-141, Sum P(7) = 2.6e-141
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 497 KYGVFPLRGKLLNVREA-THK--QILENAEINNLVKILGLQYSKKYTTVEDM 545
K+ V KL A HK ++ + N++V + KKY TV+D+
Sbjct: 993 KFVVKMTEEKLAQAEAAGLHKVFKLQTSLTCNSMVLFDHMGCLKKYETVQDI 1044
>ZFIN|ZDB-GENE-041008-136 [details] [associations]
symbol:top2b "topoisomerase (DNA) II beta"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006259 "DNA metabolic
process" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS;IBA] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS] [GO:0030261
"chromosome condensation" evidence=ISS] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISS] [GO:0007059 "chromosome segregation"
evidence=ISS;IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0071778 "WINAC complex"
evidence=IBA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0005080 "protein kinase C binding" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] [GO:0003682 "chromatin binding"
evidence=IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0042826
"histone deacetylase binding" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0010842 "retina layer
formation" evidence=IMP] [GO:0031290 "retinal ganglion cell axon
guidance" evidence=IMP] [GO:0007412 "axon target recognition"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 ZFIN:ZDB-GENE-041008-136
GO:GO:0005524 GO:GO:0005080 GO:GO:0003682 GO:GO:0006261
GO:GO:0010842 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0042826
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0071778 GO:GO:0007412
GO:GO:0031290 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 HOVERGEN:HBG052998
GeneTree:ENSGT00390000016222 CTD:7155 EMBL:BX927238 EMBL:CR391921
IPI:IPI00495305 RefSeq:NP_001038656.1 UniGene:Dr.105756 SMR:Q1LUT2
STRING:Q1LUT2 Ensembl:ENSDART00000130695 GeneID:569877
KEGG:dre:569877 InParanoid:Q1LUT2 OMA:PITKAAP NextBio:20889886
Uniprot:Q1LUT2
Length = 1618
Score = 719 (258.2 bits), Expect = 7.8e-243, Sum P(8) = 7.8e-243
Identities = 131/172 (76%), Positives = 155/172 (90%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+PKL+DANDAG K+S +CTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREAT
Sbjct: 458 IPKLDDANDAGGKHSSECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREAT 517
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
HKQI+ENAEINN++KILGLQY K Y E +K+LRYGR+MIMTDQDQDGSHIKGL+INF
Sbjct: 518 HKQIMENAEINNIIKILGLQYKKSYDDPESLKSLRYGRIMIMTDQDQDGSHIKGLLINFF 577
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN---WH 623
HHNWP+LL+ FLEEFITPI+KA+K ++E+SFYS+PEFEEWK+ T + WH
Sbjct: 578 HHNWPSLLKHTFLEEFITPIVKASKNKQEVSFYSIPEFEEWKKHTESYKTWH 629
Score = 669 (240.6 bits), Expect = 7.8e-243, Sum P(8) = 7.8e-243
Identities = 125/195 (64%), Positives = 149/195 (76%)
Query: 165 VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKD 224
VP +IFGHLLTSSNY+D E KVTGGRNGYGAKLCNIFS KF VET+C EYK+SFKQ W +
Sbjct: 157 VPALIFGHLLTSSNYDDNEKKVTGGRNGYGAKLCNIFSLKFTVETACKEYKRSFKQTWTE 216
Query: 225 NMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVF 284
NM K +IK +DFT +TF PDL KF M LDKD+V L+TRRAYD A S + VKV
Sbjct: 217 NMGKSNEAKIKYFDGEDFTCVTFQPDLAKFNMEKLDKDIVALLTRRAYDVAGSCRGVKVI 276
Query: 285 LNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNS 343
LNG+KLPV +F+ YV Y D+ DE G +K++ E VN RWEV + S++GFQQ+SFVNS
Sbjct: 277 LNGKKLPVNSFRSYVDFYVKDKLDETGVALKVVNETVNERWEVCLTMSEKGFQQISFVNS 336
Query: 344 IATTKGGRHVDAVVD 358
IATTKGGRH+D +VD
Sbjct: 337 IATTKGGRHIDYIVD 351
Score = 571 (206.1 bits), Expect = 7.8e-243, Sum P(8) = 7.8e-243
Identities = 110/155 (70%), Positives = 127/155 (81%)
Query: 13 QQNGNGPSPK----KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNR 68
+ NG G + K KK + KMSVE+IYQKK+QLEHILLRPDTYIGSVEP+T+ MW+ +
Sbjct: 27 EMNGRGDAGKSEVVKKESSKKMSVERIYQKKTQLEHILLRPDTYIGSVEPVTQQMWVFDE 86
Query: 69 ETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGI 128
E M REI++VPGLYKIFDEILVNA DNKQRD M IKIT++ E+NTISVWNNGKGI
Sbjct: 87 EIG-MNLREISFVPGLYKIFDEILVNAADNKQRDKNMTTIKITIDPESNTISVWNNGKGI 145
Query: 129 PVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTG 163
PVVEHKDEKM+VP +IFGHLLTSSNY+D E KVTG
Sbjct: 146 PVVEHKDEKMYVPALIFGHLLTSSNYDDNEKKVTG 180
Score = 354 (129.7 bits), Expect = 7.8e-243, Sum P(8) = 7.8e-243
Identities = 62/97 (63%), Positives = 80/97 (82%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
++EPEWYIPIIPMVLVNGAEGIGTGW KIPN++PREIV+NI RM+ +DPLPM P YKN
Sbjct: 855 KVEPEWYIPIIPMVLVNGAEGIGTGWACKIPNYDPREIVNNINRMLNHQDPLPMLPSYKN 914
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
FKG I G ++++V+GE+++LD + +EI+EL V W
Sbjct: 915 FKGTIHELGQNQYLVSGEVSVLDKNTIEISELPVRTW 951
Score = 196 (74.1 bits), Expect = 7.8e-243, Sum P(8) = 7.8e-243
Identities = 34/45 (75%), Positives = 40/45 (88%)
Query: 410 GMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC 454
G+++KPFQVKNH+W+F+N LI NPTFDSQTKENMTLQ SFGS C
Sbjct: 368 GVSVKPFQVKNHLWVFVNALIENPTFDSQTKENMTLQTKSFGSKC 412
Score = 135 (52.6 bits), Expect = 7.8e-243, Sum P(8) = 7.8e-243
Identities = 32/97 (32%), Positives = 50/97 (51%)
Query: 827 ERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILK 886
E + G D ++ + P+ ++Y+L M W LT E+ ELLK+RD K ELN L+
Sbjct: 1119 EEEDGGGNDSDSSVDSGSFSGPN--FNYILNMPLWCLTKEKVEELLKQRDLKKAELNELQ 1176
Query: 887 KKAPTDLWSDDLDA-LREKDKIHPCPGGNRTRGLALK 922
K +LW +DL + E D++ + G A+K
Sbjct: 1177 SKTSENLWREDLAVFIEELDRVEEQEKESVNLGKAVK 1213
Score = 56 (24.8 bits), Expect = 7.8e-243, Sum P(8) = 7.8e-243
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 1084 LDDTMPSAAGRRVEPK 1099
L++T+PS GRRVEP+
Sbjct: 1229 LEETLPSPFGRRVEPQ 1244
Score = 51 (23.0 bits), Expect = 1.2e-232, Sum P(6) = 1.2e-232
Identities = 29/122 (23%), Positives = 42/122 (34%)
Query: 836 DEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERK-NELLKKRDD---KMTELNILKKKAPT 891
D+ S + D D D + S E+ + KK D K + + KK T
Sbjct: 1452 DDKISDDDMKSDSDGDRGPVFSSYSSSSAFEKPAKKTAKKPVDTPPKPKKAPVKAKKPDT 1511
Query: 892 DLWSDDLDALREKDKIHPCPGGNRT--RGLALKRQTRYQPSNR---VLTSRDEPMVVSSG 946
+W D D +K G R+ R + + Y P + TSR S
Sbjct: 1512 SVWDSDSDTGTKKPPASKGSGKGRSKKRKQSSLEEDEYSPMKKHGKSATSRKPKKAASDD 1571
Query: 947 ED 948
ED
Sbjct: 1572 ED 1573
Score = 49 (22.3 bits), Expect = 7.8e-243, Sum P(8) = 7.8e-243
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 1484 DNTEESKSEAVNSEESKSEA-ANPIES-KQTVKTKESKLETVNISAPK 1529
D +EE + E EE +++A A+P+ S K T + + + +I PK
Sbjct: 1379 DFSEEEEEEEDGDEEQENDASASPVHSFKNTEQHDDEVDDDDDIFPPK 1426
Score = 44 (20.5 bits), Expect = 6.8e-232, Sum P(6) = 6.8e-232
Identities = 22/103 (21%), Positives = 42/103 (40%)
Query: 787 PIAPKSYKXXXXXXXXXXXXVFHDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEE 846
P+ P+ F +E + ++ G E QE A+ + Q ++
Sbjct: 1358 PVIPRD-STSRRASAVKAKYTFDFSEEEEEEEDGD--EEQENDASASPVHSFKNTEQHDD 1414
Query: 847 DPDKDYDYLLGMTFWSL---TMERKNE--LLKKR---DDKMTE 881
+ D D D T ++L T ++KN +L + DDK+++
Sbjct: 1415 EVDDDDDIFPPKTTFTLPTSTAKKKNPEPVLPSKTTYDDKISD 1457
Score = 41 (19.5 bits), Expect = 7.4e-49, Sum P(2) = 7.4e-49
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 244 KITFT-PDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDY 298
K TFT P T K + + V L ++ YD S D+K +G++ PV F Y
Sbjct: 1426 KTTFTLPTSTAKKK---NPEPV-LPSKTTYDDKISDDDMKSDSDGDRGPV--FSSY 1475
Score = 40 (19.1 bits), Expect = 6.5e-58, Sum P(5) = 6.5e-58
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 309 DGDPVKIIYEN---VNPRWEVAIAP 330
D +K +Y++ V P W + I P
Sbjct: 842 DSSLLKFLYDDNQKVEPEWYIPIIP 866
Score = 37 (18.1 bits), Expect = 5.0e-106, Sum P(6) = 5.0e-106
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 410 GMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQK 447
GM L+ ++ + ++VN + Q +NMT K
Sbjct: 89 GMNLREISFVPGLYKIFDEILVNAADNKQRDKNMTTIK 126
>UNIPROTKB|F1PRA7 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9615 "Canis
lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0042826 "histone deacetylase binding" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005080 "protein kinase C binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0001764 "neuron migration" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524 GO:GO:0001764
GO:GO:0005654 GO:GO:0030900 GO:GO:0003682 GO:GO:0007409
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:AAEX03013556 Ensembl:ENSCAFT00000009221
Uniprot:F1PRA7
Length = 1602
Score = 719 (258.2 bits), Expect = 4.4e-242, Sum P(8) = 4.4e-242
Identities = 132/188 (70%), Positives = 161/188 (85%)
Query: 435 FDSQTKENMTLQKGSFGSTC-VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVV 493
F +QT+ N + +PKL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+
Sbjct: 415 FKAQTQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVI 474
Query: 494 GRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRL 553
GRD+YGVFPLRGK+LNVREA+HKQI+ENAEINN++KI+GLQY K Y E +KTLRYG++
Sbjct: 475 GRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKI 534
Query: 554 MIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFE 613
MIMTDQDQDGSHIKGL+INFIHHNWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+
Sbjct: 535 MIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFD 594
Query: 614 EWKEETTN 621
EWK+ N
Sbjct: 595 EWKKHIEN 602
Score = 670 (240.9 bits), Expect = 4.4e-242, Sum P(8) = 4.4e-242
Identities = 131/203 (64%), Positives = 155/203 (76%)
Query: 158 EDKVTGV-VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKK 216
E KV V VP +IFG LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VET+C EYK
Sbjct: 127 EHKVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKH 186
Query: 217 SFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD+V L+TRRAYD A
Sbjct: 187 SFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAG 246
Query: 277 STKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N RW+V + S++GF
Sbjct: 247 SCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGF 306
Query: 336 QQVSFVNSIATTKGGRHVDAVVD 358
QQ+SFVNSIATTKGGRHVD VVD
Sbjct: 307 QQISFVNSIATTKGGRHVDYVVD 329
Score = 531 (192.0 bits), Expect = 4.4e-242, Sum P(8) = 4.4e-242
Identities = 96/141 (68%), Positives = 119/141 (84%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 19 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVP 77
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 78 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 137
Query: 143 MIFGHLLTSSNYNDEEDKVTG 163
+IFG LLTSSNY+D+E KVTG
Sbjct: 138 LIFGQLLTSSNYDDDEKKVTG 158
Score = 337 (123.7 bits), Expect = 4.4e-242, Sum P(8) = 4.4e-242
Identities = 60/97 (61%), Positives = 77/97 (79%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 835 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 894
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
FKG I G +++ V+GEI ++D + +EITEL V W
Sbjct: 895 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTW 931
Score = 208 (78.3 bits), Expect = 4.4e-242, Sum P(8) = 4.4e-242
Identities = 37/45 (82%), Positives = 41/45 (91%)
Query: 410 GMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC 454
G+++KPFQVKNHIW+FINCLI NPTFDSQTKENMTLQ SFGS C
Sbjct: 346 GVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKC 390
Score = 178 (67.7 bits), Expect = 4.4e-242, Sum P(8) = 4.4e-242
Identities = 37/100 (37%), Positives = 62/100 (62%)
Query: 809 HDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERK 868
++++ K K Q + E + + + D++ S + PD ++Y+L M+ WSLT E+
Sbjct: 1082 YESDPVKAWKEA-QEKAAEEEETQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKV 1138
Query: 869 NELLKKRDDKMTELNILKKKAPTDLWSDDLDA-LREKDKI 907
EL+K+RD K E+N LK+K+P+DLW +DL A + E DK+
Sbjct: 1139 EELIKQRDAKGREVNDLKRKSPSDLWKEDLAAFVEELDKV 1178
Score = 51 (23.0 bits), Expect = 4.4e-242, Sum P(8) = 4.4e-242
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 1084 LDDTMPSAAGRRVEPK 1099
L++TMPS GRR+ P+
Sbjct: 1209 LEETMPSPYGRRIVPE 1224
Score = 47 (21.6 bits), Expect = 4.4e-242, Sum P(8) = 4.4e-242
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 1486 TEESKSEAVNSEESKSEAANPIESKQTVKTKESKLETVN 1524
T++ S+ + +++ K + + K+T K K K+ET+N
Sbjct: 1462 TDKVPSKTIAAKKGKPSSDTAAKPKRTPKQK--KVETIN 1498
Score = 47 (21.6 bits), Expect = 1.4e-44, Sum P(4) = 1.4e-44
Identities = 15/75 (20%), Positives = 28/75 (37%)
Query: 214 YKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPD------LTKFKMTSLDKDMVDLI 267
Y+ + WK+ K E DD + + TP + + SL K+ V+ +
Sbjct: 1082 YESDPVKAWKEAQEKAAEEEETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEEL 1141
Query: 268 TRRAYDAAASTKDVK 282
++ D+K
Sbjct: 1142 IKQRDAKGREVNDLK 1156
Score = 40 (19.1 bits), Expect = 2.6e-57, Sum P(5) = 2.6e-57
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 309 DGDPVKIIYEN---VNPRWEVAIAP 330
D + +K +Y++ V P W + I P
Sbjct: 822 DDNLLKFLYDDNQRVEPEWYIPIIP 846
Score = 39 (18.8 bits), Expect = 8.0e-241, Sum P(8) = 8.0e-241
Identities = 16/70 (22%), Positives = 31/70 (44%)
Query: 1123 WESNLRP---SADKAESRKRTQTSQGTESEERKGHLRRWRRKEEESTQTVQVELREGV-- 1177
W+ +L DK E+++R G + KG + + + K+ + +T+ +
Sbjct: 1164 WKEDLAAFVEELDKVEAQEREDILAGMAGKAIKGKVGKPKVKKLQLEETMPSPYGRRIVP 1223
Query: 1178 NISAPKPQAS 1187
I+A K AS
Sbjct: 1224 EITAMKADAS 1233
Score = 39 (18.8 bits), Expect = 7.1e-227, Sum P(7) = 7.1e-227
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 816 PQKTGPQLERQERQAAEGEDDEAGSQTQ-EEEDP 848
P +G ++ ++ DDE+ S++ EE +P
Sbjct: 1297 PTSSGKSSAKKVKKRNPWSDDESKSESDLEETEP 1330
Score = 38 (18.4 bits), Expect = 3.9e-241, Sum P(8) = 3.9e-241
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 1128 RPSADKAESRKRTQTSQGTES 1148
+PS+D A KRT + E+
Sbjct: 1476 KPSSDTAAKPKRTPKQKKVET 1496
Score = 38 (18.4 bits), Expect = 2.3e-196, Sum P(5) = 2.3e-196
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 2057 FQNNQEMETFLKQLAGEV 2074
F+ N + E + QLAG V
Sbjct: 734 FKRNDKREVKVAQLAGSV 751
Score = 38 (18.4 bits), Expect = 2.3e-196, Sum P(5) = 2.3e-196
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 2026 LYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
L+++ EDD +T +K + + F ++
Sbjct: 635 LFRYAGPEDDAAITLAFSKKKIDDRKEWLTNFMEDR 670
Score = 37 (18.1 bits), Expect = 1.5e-43, Sum P(4) = 1.5e-43
Identities = 9/52 (17%), Positives = 24/52 (46%)
Query: 261 KDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDP 312
KD++ ++ +R Y++ VK + ++ + ++ + D + G P
Sbjct: 1071 KDLIQMLVQRGYES----DPVKAWKEAQEKAAEE-EETQNQHDDSSSDSGTP 1117
Score = 37 (18.1 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIK 109
GL+K+F C++ M C+K
Sbjct: 984 GLHKVFKLQTTLTCNSMVLFDHMGCLK 1010
>ZFIN|ZDB-GENE-030131-2453 [details] [associations]
symbol:top2a "topoisomerase (DNA) II alpha"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006259 "DNA metabolic
process" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS;IBA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0007059 "chromosome segregation" evidence=ISS;IMP] [GO:0009330
"DNA topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0030261 "chromosome condensation" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=IBA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0009295 "nucleoid" evidence=IBA] [GO:0031100 "organ
regeneration" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0003916 "DNA topoisomerase activity" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 ZFIN:ZDB-GENE-030131-2453
GO:GO:0005524 GO:GO:0031100 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 CTD:7153 HOVERGEN:HBG052998
EMBL:AY648832 IPI:IPI00488403 RefSeq:NP_001003834.1
UniGene:Dr.119089 UniGene:Dr.31760 ProteinModelPortal:Q6DRC7
SMR:Q6DRC7 STRING:Q6DRC7 GeneID:323733 KEGG:dre:323733
NextBio:20808410 Uniprot:Q6DRC7
Length = 1574
Score = 710 (255.0 bits), Expect = 8.1e-242, Sum P(8) = 8.1e-242
Identities = 131/167 (78%), Positives = 153/167 (91%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
VPKL+DANDAG KNS CTLILTEGDSAK+LAVSGLGVVGRD+YGVFPLRGK+LNVREA+
Sbjct: 437 VPKLDDANDAGGKNSNSCTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLRGKMLNVREAS 496
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
HKQI+ENAEINN++KILGLQY K Y+ E +K+LRYG+LMIMTDQDQDGSHIKGL+INFI
Sbjct: 497 HKQIMENAEINNIIKILGLQYKKNYSDPESLKSLRYGKLMIMTDQDQDGSHIKGLLINFI 556
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN 621
HHNWP+LLR FLEEFITPIIKA+ ++E+SFYS+PEF EWKE+ ++
Sbjct: 557 HHNWPSLLRHNFLEEFITPIIKASNKKQEISFYSIPEFTEWKEKQSS 603
Score = 652 (234.6 bits), Expect = 8.1e-242, Sum P(8) = 8.1e-242
Identities = 127/203 (62%), Positives = 150/203 (73%)
Query: 158 EDKVTGV-VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKK 216
E KV V VP +IFG LLTSSNY+D+E KVTGGRNGYGAKLCNIFS KF VET+C E K+
Sbjct: 128 EHKVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSLKFTVETACRESKR 187
Query: 217 SFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
FKQ W DNM + +IK DD+T ITF PDL KFKM +LDKD V L+TRRAYD A
Sbjct: 188 CFKQTWFDNMERAGESKIKPFDGDDYTCITFQPDLAKFKMQALDKDTVALLTRRAYDIAG 247
Query: 277 STKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
STK V+V LNG++LP+ NF+ YV LY D+ DE G P+ +++E VN RWEV + S++GF
Sbjct: 248 STKGVRVLLNGKRLPINNFRTYVDLYVKDKVDETGSPLTVVHEMVNERWEVCLTLSEKGF 307
Query: 336 QQVSFVNSIATTKGGRHVDAVVD 358
QQVSFVNSI KGGRH D V D
Sbjct: 308 QQVSFVNSIDKNKGGRHTDYVAD 330
Score = 546 (197.3 bits), Expect = 8.1e-242, Sum P(8) = 8.1e-242
Identities = 101/142 (71%), Positives = 120/142 (84%)
Query: 22 KKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYV 81
K K ++SVE+IYQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + +T M R+IT+V
Sbjct: 19 KPKKDEKRLSVERIYQKKTQLEHILLRPDTYIGSVEPVTQQMWVFDEDTG-MNCRDITFV 77
Query: 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVP 141
PGLYKIFDEILVNA DNKQRD MNCIK+ ++ E NTISVWNNGKGIPVVEHK EK++VP
Sbjct: 78 PGLYKIFDEILVNAADNKQRDKTMNCIKVNIDPENNTISVWNNGKGIPVVEHKVEKVYVP 137
Query: 142 TMIFGHLLTSSNYNDEEDKVTG 163
+IFG LLTSSNY+D+E KVTG
Sbjct: 138 ALIFGQLLTSSNYDDDEKKVTG 159
Score = 323 (118.8 bits), Expect = 8.1e-242, Sum P(8) = 8.1e-242
Identities = 59/99 (59%), Positives = 75/99 (75%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMK--PWY 716
R+EPEWY+PIIP+VL NG EGIGTGW ++IP ++ REI++NI RMI GE+PLPM P Y
Sbjct: 834 RVEPEWYMPIIPLVLANGGEGIGTGWASRIPKYDVREIINNIHRMINGEEPLPMVNLPSY 893
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
K FKG ID +++V NGE+AI+D +EITEL V W
Sbjct: 894 KGFKGTIDELAKNQYVNNGEVAIIDSTTIEITELPVKTW 932
Score = 208 (78.3 bits), Expect = 8.1e-242, Sum P(8) = 8.1e-242
Identities = 42/80 (52%), Positives = 56/80 (70%)
Query: 396 QMAKTLIDIGVRLG--GMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGST 453
Q+ LI++ + G+A+KPFQVKNH+W+F+NCLI NP+FDSQTKENMTLQ+ +FGS
Sbjct: 331 QIVSKLIEVVKKKNKAGVAVKPFQVKNHMWLFVNCLIENPSFDSQTKENMTLQQKNFGSA 390
Query: 454 CVPK---LEDANDAGTKNSI 470
C ++ AN G SI
Sbjct: 391 CSLSDKFVKQANGCGIVESI 410
Score = 204 (76.9 bits), Expect = 8.1e-242, Sum P(8) = 8.1e-242
Identities = 41/81 (50%), Positives = 54/81 (66%)
Query: 824 ERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELN 883
+ QE++ E ED E + ++E+ DY+YLL M W LT E+K+EL K+RD KMTELN
Sbjct: 1095 DAQEKE--EEEDAEDDDEKEKEDTSGPDYNYLLSMPMWYLTKEKKDELCKQRDAKMTELN 1152
Query: 884 ILKKKAPTDLWSDDLDALREK 904
LK KAP DLW +DL A E+
Sbjct: 1153 TLKMKAPADLWKEDLAAFTEE 1173
Score = 50 (22.7 bits), Expect = 8.1e-242, Sum P(8) = 8.1e-242
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 1492 EAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNE 1541
E+ N E S + ++ ++S K++ + A KP+ASS ++ +E
Sbjct: 1362 ESFNPEPSAAPDSD-VDSPPPPVVKKAPTKVAKAKAEKPEASSKSSSHSE 1410
Score = 48 (22.0 bits), Expect = 1.3e-241, Sum P(8) = 1.3e-241
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 1484 DNTEESKSEAVNSEESKSEAANPIE-SKQTVKTKESKLETVNISAPKPQASSTKNASNED 1542
+ E S + +SE S+ A P++ S + K +T +S K +A+ +K S D
Sbjct: 1397 EKPEASSKSSSHSEASQEPAPKPVKKSAEGAAKKPPAKKTSAVS--KKKAADSKQPSILD 1454
Query: 1543 FLGE 1546
L +
Sbjct: 1455 VLSK 1458
Score = 45 (20.9 bits), Expect = 8.1e-242, Sum P(8) = 8.1e-242
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 1085 DDTMPSAAGRRVEPK 1099
++TMP+ GRRV P+
Sbjct: 1205 NETMPTPQGRRVIPR 1219
Score = 45 (20.9 bits), Expect = 2.7e-241, Sum P(8) = 2.7e-241
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 1490 KSEAVNSEESKSEAANPIESKQTVKTKESKLET 1522
K AV S S++A P +K+ K ++S L +
Sbjct: 1469 KPTAVKPLSSDSDSAGPAVAKKQAKKRKSVLSS 1501
Score = 44 (20.5 bits), Expect = 1.1e-223, Sum P(7) = 1.1e-223
Identities = 35/149 (23%), Positives = 57/149 (38%)
Query: 1532 ASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRK----- 1586
A ED G YN L + M + K+ +EL ++ D + ++
Sbjct: 1105 AEDDDEKEKEDTSGPDYNY--LLSMP-MWYLTKEKKDELCKQRDAKMTELNTLKMKAPAD 1161
Query: 1587 -WKTSLG-ITED-EDLE--ETFSDNPSP----SEPEPVIMHIDMDCFFVSVGIRHHPELQ 1637
WK L TE+ E +E E + N P +P ++ + + G R P +
Sbjct: 1162 LWKEDLAAFTEELERVEQKEKEAQNAMPLVKGKVGKPKVVKVKNETMPTPQGRRVIPRIT 1221
Query: 1638 D--EPVAVAHGKGNSSKVREGVDRQAEFD 1664
+ AV +G SK G+ + EFD
Sbjct: 1222 STMKVQAVKKERGKGSKKEAGLVMKMEFD 1250
Score = 44 (20.5 bits), Expect = 3.9e-61, Sum P(6) = 3.9e-61
Identities = 18/87 (20%), Positives = 40/87 (45%)
Query: 223 KDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDL--ITRRAYDAAASTKD 280
++ + V P K G K ++ + ++ +D +++ + + + + K+
Sbjct: 882 EEPLPMVNLPSYK-GFKGTIDELAKNQYVNNGEVAIIDSTTIEITELPVKTWTPGLTYKE 940
Query: 281 --VKVFLNG-EKLPVKNFQDYVKLYTD 304
++V LNG EK+P DY + +TD
Sbjct: 941 NVLEVMLNGTEKVPAL-ITDYKEYHTD 966
Score = 41 (19.5 bits), Expect = 2.1e-241, Sum P(8) = 2.1e-241
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 1030 PKSQREGAQDSDLE 1043
P S EG DSDLE
Sbjct: 1300 PWSSDEGESDSDLE 1313
Score = 41 (19.5 bits), Expect = 1.0e-224, Sum P(7) = 1.0e-224
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 810 DNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEED 847
D EL ++T P+ E++ER+AA + S E +D
Sbjct: 1311 DLELMS-EETAPR-EKRERRAAVEKKYSLSSSEDEFDD 1346
Score = 40 (19.1 bits), Expect = 9.0e-241, Sum P(8) = 9.0e-241
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 1499 SKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNE 1541
+K++A P S ++ E+ E APKP S + A+ +
Sbjct: 1392 AKAKAEKPEASSKSSSHSEASQEP----APKPVKKSAEGAAKK 1430
Score = 40 (19.1 bits), Expect = 1.7e-125, Sum P(7) = 1.7e-125
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 139 FVPTM--IFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYND 181
FVP + IF +L ++ N + DK + I T S +N+
Sbjct: 76 FVPGLYKIFDEILVNAADNKQRDKTMNCIKVNIDPENNTISVWNN 120
Score = 39 (18.8 bits), Expect = 4.9e-90, Sum P(6) = 4.9e-90
Identities = 22/105 (20%), Positives = 47/105 (44%)
Query: 144 IFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGG-----RNGYGAKLC 198
I G L NY+D E + ++ +G L+ ++ + + + G + + + L
Sbjct: 512 ILG-LQYKKNYSDPES-----LKSLRYGKLMIMTDQDQDGSHIKGLLINFIHHNWPSLLR 565
Query: 199 NIFSSKFV---VETSCSEYKKSFKQV-----WKDNMSKVTSPEIK 235
+ F +F+ ++ S + + SF + WK+ S + S +IK
Sbjct: 566 HNFLEEFITPIIKASNKKQEISFYSIPEFTEWKEKQSSIKSWKIK 610
Score = 38 (18.4 bits), Expect = 2.3e-195, Sum P(6) = 2.3e-195
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1279 AIRKWKTS----LGITEDEDLEETFSD 1301
+I+ WK LG + ++ +E FSD
Sbjct: 603 SIKSWKIKYYKGLGTSTSKEAKEYFSD 629
Score = 38 (18.4 bits), Expect = 4.2e-194, Sum P(6) = 4.2e-194
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 2057 FQNNQEMETFLKQLAGEV 2074
F+ N + E + QLAG V
Sbjct: 733 FKRNDKREVKVAQLAGSV 750
Score = 38 (18.4 bits), Expect = 4.2e-194, Sum P(6) = 4.2e-194
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1583 AIRKWKTS----LGITEDEDLEETFSD 1605
+I+ WK LG + ++ +E FSD
Sbjct: 603 SIKSWKIKYYKGLGTSTSKEAKEYFSD 629
Score = 37 (18.1 bits), Expect = 2.7e-224, Sum P(7) = 2.7e-224
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 1278 EAIRKWKTSLGITEDEDLEE 1297
+ ++ WK + E+ED E+
Sbjct: 1088 DPVKAWKDAQEKEEEEDAED 1107
Score = 37 (18.1 bits), Expect = 6.5e-224, Sum P(6) = 6.5e-224
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 1582 EAIRKWKTSLGITEDEDLEE 1601
+ ++ WK + E+ED E+
Sbjct: 1088 DPVKAWKDAQEKEEEEDAED 1107
>UNIPROTKB|F1P2F2 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0040016 "embryonic cleavage" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0042826 "histone
deacetylase binding" evidence=IEA] [GO:0043065 "positive regulation
of apoptotic process" evidence=IEA] [GO:0043130 "ubiquitin binding"
evidence=IEA] [GO:0045870 "positive regulation of retroviral genome
replication" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0005080 "protein kinase C binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005814 "centriole" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0006266 "DNA
ligation" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008144 "drug binding" evidence=IEA] [GO:0009330
"DNA topoisomerase complex (ATP-hydrolyzing)" evidence=IEA]
[GO:0030263 "apoptotic chromosome condensation" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0007059 GO:GO:0005654 GO:GO:0005730
GO:GO:0005814 GO:GO:0008144 GO:GO:0045944 GO:GO:0003682
GO:GO:0006974 GO:GO:0043065 GO:GO:0030263 Gene3D:3.30.565.10
SUPFAM:SSF55874 GO:GO:0000793 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GO:GO:0045870
GeneTree:ENSGT00390000016222 EMBL:AADN02068749 IPI:IPI00571557
Ensembl:ENSGALT00000006249 Uniprot:F1P2F2
Length = 1586
Score = 819 (293.4 bits), Expect = 9.8e-242, Sum P(6) = 9.8e-242
Identities = 176/323 (54%), Positives = 215/323 (66%)
Query: 158 EDKVTGV-VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKK 216
E KV V VP +IFG LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VET+C EYKK
Sbjct: 126 EHKVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACREYKK 185
Query: 217 SFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
FKQ W DNM K +K +D+T +TF PDL+KFKMT LDKD+V L++RRAYD A
Sbjct: 186 LFKQTWTDNMGKAGEMTLKHFDGEDYTCVTFQPDLSKFKMTILDKDIVALMSRRAYDIAG 245
Query: 277 STKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
STKDVKVFLNG++LPVK F+ YV LY D+ DE G+ +K+I+E VN RWEV + S++GF
Sbjct: 246 STKDVKVFLNGKRLPVKGFRSYVDLYLKDKVDETGNALKVIHEEVNSRWEVCLTLSEKGF 305
Query: 336 QQVSFVNSIATTKG-GRHVDAVVDAXXXXXXXXXXXXXXDLGCTIIMLFGXXXXXXXXXX 394
QQVSFVNSIATTK H+ + LFG
Sbjct: 306 QQVSFVNSIATTKSHSLHILCYWHCVLFHWKH-------------LKLFGPGGRHVDYVA 352
Query: 395 LQMAKTLIDIGVRLG--GMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS 452
Q+ LID+ + G+ +KPFQVKNH+WIF+N LI NPTFDSQTKENMTLQ SFGS
Sbjct: 353 DQIVTKLIDVVKKKNKNGVGVKPFQVKNHMWIFVNSLIENPTFDSQTKENMTLQAKSFGS 412
Query: 453 TCVPKLEDANDAGTKNSIDCTLI 475
TC KL ++ K ++ C ++
Sbjct: 413 TC--KL---SEKFIKGAVGCGIV 430
Score = 731 (262.4 bits), Expect = 9.8e-242, Sum P(6) = 9.8e-242
Identities = 134/170 (78%), Positives = 155/170 (91%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
VPKL+DANDAG KNSIDCTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+
Sbjct: 460 VPKLDDANDAGNKNSIDCTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKMLNVREAS 519
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
HKQI+ENAEINN++KI+GLQY K Y E +K+LRYG++MIMTDQDQDGSHIKGL+INFI
Sbjct: 520 HKQIMENAEINNIIKIVGLQYKKNYEDRESLKSLRYGKIMIMTDQDQDGSHIKGLLINFI 579
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHT 624
HHNWP+LLR FLEEFITPIIK +K +EE+ FYS+PEFEEWK T N+++
Sbjct: 580 HHNWPSLLRHNFLEEFITPIIKVSKNKEEIPFYSIPEFEEWKSSTQNYNS 629
Score = 530 (191.6 bits), Expect = 9.8e-242, Sum P(6) = 9.8e-242
Identities = 97/143 (67%), Positives = 119/143 (83%)
Query: 21 PKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITY 80
PK ++SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + R++T+
Sbjct: 16 PKADGAQKRLSVERIYQKKTQLEHILLRPDTYIGSVETVTQQMWVFDEDVG-LNCRDVTF 74
Query: 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
VPGLYKIFDEILVNA DNKQRD M+CIK+T++ E NTISVWNNGKGIPVVEHK EK++V
Sbjct: 75 VPGLYKIFDEILVNAADNKQRDKSMSCIKVTIDPENNTISVWNNGKGIPVVEHKVEKVYV 134
Query: 141 PTMIFGHLLTSSNYNDEEDKVTG 163
P +IFG LLTSSNY+D+E KVTG
Sbjct: 135 PALIFGQLLTSSNYDDDEKKVTG 157
Score = 339 (124.4 bits), Expect = 9.8e-242, Sum P(6) = 9.8e-242
Identities = 60/97 (61%), Positives = 78/97 (80%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWY+PIIPMVL+NGAEGIGTGW KIPN + RE V+NI+ ++ G++PLPM P YKN
Sbjct: 857 RVEPEWYMPIIPMVLINGAEGIGTGWSCKIPNFDIRETVNNIRCLLDGKEPLPMLPSYKN 916
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
FKG ID G +++V++GE++ILD +EITEL V W
Sbjct: 917 FKGTIDELGPNQYVISGEVSILDSTTIEITELPVRTW 953
Score = 171 (65.3 bits), Expect = 9.8e-242, Sum P(6) = 9.8e-242
Identities = 35/73 (47%), Positives = 48/73 (65%)
Query: 832 EGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPT 891
E E DE+G ++ PD ++YLL M W LT E+K+EL K+RD+K EL LK K+P+
Sbjct: 1130 EEEGDESGEESAAATGPD--FNYLLNMPLWYLTKEKKDELCKQRDNKDKELEDLKHKSPS 1187
Query: 892 DLWSDDLDALREK 904
DLW +DL A E+
Sbjct: 1188 DLWKEDLAAFVEE 1200
Score = 46 (21.3 bits), Expect = 9.8e-242, Sum P(6) = 9.8e-242
Identities = 15/68 (22%), Positives = 30/68 (44%)
Query: 1129 PSADKAESRKRTQTSQGTESEERKGHLRRWRRKEEESTQTVQVELREGVNISAPKPQASS 1188
P A +A R+ + S+ T + +K R R+ + T + + G S P ++
Sbjct: 1482 PKAPRAAQREESPPSEATAAVAKKPGPPRGRKATKRLTSSSDSDSDFG---SRPSKSVAA 1538
Query: 1189 TKNASNED 1196
K+ ++D
Sbjct: 1539 KKSKRDDD 1546
Score = 45 (20.9 bits), Expect = 4.2e-241, Sum P(7) = 4.2e-241
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 2203 EHQSKTLATIDTFFTNKGKPPDQLNNPRPGPSNSTITP 2240
E+Q + D+ T+K KPP P G S P
Sbjct: 1379 EYQENSEGNTDSDTTSKKKPPKAKAVPNRGGSVGCFRP 1416
Score = 44 (20.5 bits), Expect = 1.2e-42, Sum P(4) = 1.2e-42
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 1986 GVGHSL--LFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFE 2041
G G L +F C + + + + + +G +TL KH GED +TF+
Sbjct: 161 GYGAKLCNIFSTKFTVETACREYKKLFKQTWTDNMGKAGEMTL-KHFDGEDYTCVTFQ 217
Score = 40 (19.1 bits), Expect = 4.2e-241, Sum P(7) = 4.2e-241
Identities = 14/76 (18%), Positives = 35/76 (46%)
Query: 1124 ESNLRPSADKAESRKRTQTSQGTESEERKGHLRRWRRKEEESTQTV-QVELR-EGVNISA 1181
+ ++ ++++ ++ +S E K L + +RK E+ +T Q L + +
Sbjct: 1268 KKKIKSEKNESDEKQEGNSSGDKEPSSLKQRLAQ-KRKAEQGKRTKRQTTLPFKPIKKMK 1326
Query: 1182 PKPQASSTKNASNEDF 1197
P + S ++ ++DF
Sbjct: 1327 RNPWSDSESDSESDDF 1342
Score = 38 (18.4 bits), Expect = 6.3e-197, Sum P(5) = 6.3e-197
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 2057 FQNNQEMETFLKQLAGEV 2074
F+ N + E + QLAG V
Sbjct: 756 FKRNDKREVKVAQLAGSV 773
Score = 38 (18.4 bits), Expect = 6.3e-197, Sum P(5) = 6.3e-197
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 2027 YKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
+K+ EDD +T +K V + F ++
Sbjct: 660 FKYSGPEDDAAITLAFSKKKVEERKEWLTNFMEDR 694
Score = 37 (18.1 bits), Expect = 1.3e-107, Sum P(6) = 1.3e-107
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 116 TNTISVWNNGKGIPV 130
T + V+ NGK +PV
Sbjct: 247 TKDVKVFLNGKRLPV 261
>MGI|MGI:98791 [details] [associations]
symbol:Top2b "topoisomerase (DNA) II beta" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0000819 "sister chromatid segregation" evidence=IBA]
[GO:0001764 "neuron migration" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=ISO;IBA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISO;IBA] [GO:0005080 "protein
kinase C binding" evidence=ISO;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005694 "chromosome" evidence=IDA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=ISO;IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0008022 "protein C-terminus binding" evidence=ISO] [GO:0016853
"isomerase activity" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0030900 "forebrain development" evidence=IMP]
[GO:0042826 "histone deacetylase binding" evidence=ISO;IBA]
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IBA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] [GO:0071778 "WINAC
complex" evidence=ISO;IBA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
MGI:MGI:98791 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005080 GO:GO:0005654 GO:GO:0005730
GO:GO:0030900 GO:GO:0003682 GO:GO:0006261 GO:GO:0007409
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0042826 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0071778 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 eggNOG:COG0187 Gene3D:3.40.50.670
PROSITE:PS50880 KO:K03164 HOGENOM:HOG000216693 HOVERGEN:HBG052998
GeneTree:ENSGT00390000016222 CTD:7155 OMA:AKEYFQD EMBL:D38046
EMBL:BC041106 EMBL:BC054541 IPI:IPI00135443 RefSeq:NP_033435.2
UniGene:Mm.130362 ProteinModelPortal:Q64511 SMR:Q64511
IntAct:Q64511 STRING:Q64511 PhosphoSite:Q64511 PaxDb:Q64511
PRIDE:Q64511 Ensembl:ENSMUST00000017629 GeneID:21974 KEGG:mmu:21974
UCSC:uc007shc.1 InParanoid:Q64511 OrthoDB:EOG4640B2
BindingDB:Q64511 ChEMBL:CHEMBL5564 NextBio:301674 Bgee:Q64511
CleanEx:MM_TOP2B Genevestigator:Q64511
GermOnline:ENSMUSG00000017485 Uniprot:Q64511
Length = 1612
Score = 719 (258.2 bits), Expect = 1.3e-241, Sum P(8) = 1.3e-241
Identities = 132/188 (70%), Positives = 161/188 (85%)
Query: 435 FDSQTKENMTLQKGSFGSTC-VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVV 493
F +QT+ N + +PKL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+
Sbjct: 426 FKAQTQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVI 485
Query: 494 GRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRL 553
GRD+YGVFPLRGK+LNVREA+HKQI+ENAEINN++KI+GLQY K Y E +KTLRYG++
Sbjct: 486 GRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKI 545
Query: 554 MIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFE 613
MIMTDQDQDGSHIKGL+INFIHHNWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+
Sbjct: 546 MIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFD 605
Query: 614 EWKEETTN 621
EWK+ N
Sbjct: 606 EWKKHIEN 613
Score = 670 (240.9 bits), Expect = 1.3e-241, Sum P(8) = 1.3e-241
Identities = 131/203 (64%), Positives = 155/203 (76%)
Query: 158 EDKVTGV-VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKK 216
E KV V VP +IFG LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VET+C EYK
Sbjct: 138 EHKVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKH 197
Query: 217 SFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD+V L+TRRAYD A
Sbjct: 198 SFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAG 257
Query: 277 STKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N RW+V + S++GF
Sbjct: 258 SCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGF 317
Query: 336 QQVSFVNSIATTKGGRHVDAVVD 358
QQ+SFVNSIATTKGGRHVD VVD
Sbjct: 318 QQISFVNSIATTKGGRHVDYVVD 340
Score = 530 (191.6 bits), Expect = 1.3e-241, Sum P(8) = 1.3e-241
Identities = 96/141 (68%), Positives = 118/141 (83%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 30 KNDSTKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVP 88
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 89 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 148
Query: 143 MIFGHLLTSSNYNDEEDKVTG 163
+IFG LLTSSNY+D+E KVTG
Sbjct: 149 LIFGQLLTSSNYDDDEKKVTG 169
Score = 339 (124.4 bits), Expect = 1.3e-241, Sum P(8) = 1.3e-241
Identities = 60/97 (61%), Positives = 77/97 (79%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 844 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLEGLDPHPMLPNYKN 903
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
FKG I G +++ V+GEI ++D + +EITEL V W
Sbjct: 904 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTW 940
Score = 210 (79.0 bits), Expect = 1.3e-241, Sum P(8) = 1.3e-241
Identities = 40/61 (65%), Positives = 48/61 (78%)
Query: 396 QMAKTLIDIGVRLG--GMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGST 453
Q+ LI++ + G+++KPFQVKNHIW+FINCLI NPTFDSQTKENMTLQ SFGS
Sbjct: 341 QVVSKLIEVVKKKNKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSK 400
Query: 454 C 454
C
Sbjct: 401 C 401
Score = 180 (68.4 bits), Expect = 1.3e-241, Sum P(8) = 1.3e-241
Identities = 41/90 (45%), Positives = 59/90 (65%)
Query: 824 ERQERQAAEGED-----DEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDK 878
E QE+ AAE ED D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K
Sbjct: 1101 EAQEK-AAEEEDSQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDTK 1157
Query: 879 MTELNILKKKAPTDLWSDDLDA-LREKDKI 907
E+N LK+K+P+DLW +DL A + E DK+
Sbjct: 1158 GREVNDLKRKSPSDLWKEDLAAFVEELDKV 1187
Score = 51 (23.0 bits), Expect = 1.3e-241, Sum P(8) = 1.3e-241
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 1084 LDDTMPSAAGRRVEPK 1099
L++TMPS GRR+ P+
Sbjct: 1218 LEETMPSPYGRRIVPE 1233
Score = 49 (22.3 bits), Expect = 9.6e-44, Sum P(4) = 9.6e-44
Identities = 15/75 (20%), Positives = 28/75 (37%)
Query: 214 YKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPD------LTKFKMTSLDKDMVDLI 267
Y+ + WK+ K E DD + + TP + + SL K+ V+ +
Sbjct: 1091 YESDPVKAWKEAQEKAAEEEDSQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEEL 1150
Query: 268 TRRAYDAAASTKDVK 282
++ D+K
Sbjct: 1151 IKQRDTKGREVNDLK 1165
Score = 41 (19.5 bits), Expect = 2.1e-226, Sum P(7) = 2.1e-226
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 816 PQKTGPQLERQERQAAEGEDDEAGSQTQ-EEEDP 848
P TG ++ ++ DDE+ S++ EE +P
Sbjct: 1306 PTSTGKTNAKKVKKRNPWSDDESKSESDLEEAEP 1339
Score = 41 (19.5 bits), Expect = 6.5e-43, Sum P(4) = 6.5e-43
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 261 KDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDP 312
KD++ ++ +R Y++ VK + ++ + +D + D + G P
Sbjct: 1080 KDLIQMLVQRGYES----DPVKAWKEAQEKAAEE-EDSQNQHDDSSSDSGTP 1126
Score = 40 (19.1 bits), Expect = 2.7e-226, Sum P(7) = 2.7e-226
Identities = 16/70 (22%), Positives = 31/70 (44%)
Query: 1123 WESNLRP---SADKAESRKRTQTSQGTESEERKGHLRRWRRKEEESTQTVQVELREGV-- 1177
W+ +L DK E+++R G + KG + + + K+ + +T+ +
Sbjct: 1173 WKEDLAAFVEELDKVEAQEREDILAGMSGKAIKGKVGKPKVKKLQLEETMPSPYGRRIVP 1232
Query: 1178 NISAPKPQAS 1187
I+A K AS
Sbjct: 1233 EITAMKADAS 1242
Score = 40 (19.1 bits), Expect = 1.8e-56, Sum P(5) = 1.8e-56
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 309 DGDPVKIIYEN---VNPRWEVAIAP 330
D + +K +Y++ V P W + I P
Sbjct: 831 DDNLLKFLYDDNQRVEPEWYIPIIP 855
Score = 38 (18.4 bits), Expect = 1.3e-241, Sum P(8) = 1.3e-241
Identities = 14/55 (25%), Positives = 19/55 (34%)
Query: 1495 NSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYN 1549
N E++ S A KQT K + P A K A + + E N
Sbjct: 1454 NEEDTASVFAPSFGLKQTDKLPSKTVAAKKGKPPSDTAPKAKRAPKQKKIVETIN 1508
Score = 38 (18.4 bits), Expect = 2.0e-196, Sum P(5) = 2.0e-196
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 2057 FQNNQEMETFLKQLAGEV 2074
F+ N + E + QLAG V
Sbjct: 743 FKRNDKREVKVAQLAGSV 760
Score = 38 (18.4 bits), Expect = 2.0e-196, Sum P(5) = 2.0e-196
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 2026 LYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
L+++ EDD +T +K + + F ++
Sbjct: 646 LFRYAGPEDDAAITLAFSKKKIDDRKEWLTNFMEDR 681
Score = 37 (18.1 bits), Expect = 7.5e-06, Sum P(4) = 7.5e-06
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIK 109
GL+K+F C++ M C+K
Sbjct: 993 GLHKVFKLQTTLTCNSMVLFDHMGCLK 1019
>UNIPROTKB|F1RS45 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0042826
"histone deacetylase binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005080 "protein kinase C binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001764 "neuron migration"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005654 GO:GO:0030900 GO:GO:0003682
GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:CU582923 Ensembl:ENSSSCT00000012279
ArrayExpress:F1RS45 Uniprot:F1RS45
Length = 1615
Score = 716 (257.1 bits), Expect = 1.5e-241, Sum P(8) = 1.5e-241
Identities = 131/188 (69%), Positives = 161/188 (85%)
Query: 435 FDSQTKENMTLQKGSFGSTC-VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVV 493
F +QT+ N + +PKL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+
Sbjct: 430 FKAQTQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVI 489
Query: 494 GRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRL 553
GRD+YGVFPLRGK+LNVREA+HKQI+ENAEINN++KI+GLQY K Y E +KTLRYG++
Sbjct: 490 GRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKI 549
Query: 554 MIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFE 613
MIMTDQDQDGSHIKGL+INFIHHNWP+LL+ FLEEFITPI+KA+K ++EL+FYS+PEF+
Sbjct: 550 MIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELAFYSIPEFD 609
Query: 614 EWKEETTN 621
EWK+ N
Sbjct: 610 EWKKHIEN 617
Score = 669 (240.6 bits), Expect = 1.5e-241, Sum P(8) = 1.5e-241
Identities = 131/203 (64%), Positives = 154/203 (75%)
Query: 158 EDKVTGV-VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKK 216
E KV V VP +IFG LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VET+C EYK
Sbjct: 142 EHKVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKH 201
Query: 217 SFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
SFKQ W +NM K + +IK +D+T ITF PDL KFKM LDKD+V L+TRRAYD A
Sbjct: 202 SFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLAKFKMEKLDKDIVALMTRRAYDLAG 261
Query: 277 STKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N RW+V + S++GF
Sbjct: 262 SCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGF 321
Query: 336 QQVSFVNSIATTKGGRHVDAVVD 358
QQ+SFVNSIATTKGGRHVD VVD
Sbjct: 322 QQISFVNSIATTKGGRHVDYVVD 344
Score = 531 (192.0 bits), Expect = 1.5e-241, Sum P(8) = 1.5e-241
Identities = 96/141 (68%), Positives = 119/141 (84%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 34 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVP 92
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 93 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 152
Query: 143 MIFGHLLTSSNYNDEEDKVTG 163
+IFG LLTSSNY+D+E KVTG
Sbjct: 153 LIFGQLLTSSNYDDDEKKVTG 173
Score = 337 (123.7 bits), Expect = 1.5e-241, Sum P(8) = 1.5e-241
Identities = 60/97 (61%), Positives = 77/97 (79%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 850 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 909
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
FKG I G +++ V+GEI ++D + +EITEL V W
Sbjct: 910 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTW 946
Score = 208 (78.3 bits), Expect = 1.5e-241, Sum P(8) = 1.5e-241
Identities = 37/45 (82%), Positives = 41/45 (91%)
Query: 410 GMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC 454
G+++KPFQVKNHIW+FINCLI NPTFDSQTKENMTLQ SFGS C
Sbjct: 361 GVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKC 405
Score = 178 (67.7 bits), Expect = 1.5e-241, Sum P(8) = 1.5e-241
Identities = 37/100 (37%), Positives = 62/100 (62%)
Query: 809 HDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERK 868
++++ K K Q + E + + + D++ S + PD ++Y+L M+ WSLT E+
Sbjct: 1097 YESDPVKAWKEA-QEKAAEEEETQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKV 1153
Query: 869 NELLKKRDDKMTELNILKKKAPTDLWSDDLDA-LREKDKI 907
EL+K+RD K E+N LK+K+P+DLW +DL A + E DK+
Sbjct: 1154 EELIKQRDAKGREVNDLKRKSPSDLWKEDLAAFVEELDKV 1193
Score = 51 (23.0 bits), Expect = 1.5e-241, Sum P(8) = 1.5e-241
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 1084 LDDTMPSAAGRRVEPK 1099
L++TMPS GRR+ P+
Sbjct: 1224 LEETMPSPFGRRIVPE 1239
Score = 47 (21.6 bits), Expect = 1.5e-241, Sum P(8) = 1.5e-241
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 1486 TEESKSEAVNSEESKSEAANPIESKQTVKTKESKLETVN 1524
TE+ S+ V +++ K + K+T K K K+ET+N
Sbjct: 1476 TEKVPSKTVAAKKGKPSLDTTPKPKRTPKQK--KVETIN 1512
Score = 47 (21.6 bits), Expect = 1.4e-44, Sum P(4) = 1.4e-44
Identities = 15/75 (20%), Positives = 28/75 (37%)
Query: 214 YKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPD------LTKFKMTSLDKDMVDLI 267
Y+ + WK+ K E DD + + TP + + SL K+ V+ +
Sbjct: 1097 YESDPVKAWKEAQEKAAEEEETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEEL 1156
Query: 268 TRRAYDAAASTKDVK 282
++ D+K
Sbjct: 1157 IKQRDAKGREVNDLK 1171
Score = 42 (19.8 bits), Expect = 1.3e-240, Sum P(8) = 1.3e-240
Identities = 16/70 (22%), Positives = 31/70 (44%)
Query: 1123 WESNLRP---SADKAESRKRTQTSQGTESEERKGHLRRWRRKEEESTQTVQVELREGV-- 1177
W+ +L DK E+++R G + KG + + + K+ + +T+ +
Sbjct: 1179 WKEDLAAFVEELDKVEAQEREDVLAGMAGKAIKGKIGKPKVKKLQLEETMPSPFGRRIVP 1238
Query: 1178 NISAPKPQAS 1187
I+A K AS
Sbjct: 1239 EITAMKADAS 1248
Score = 41 (19.5 bits), Expect = 1.6e-226, Sum P(6) = 1.6e-226
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 810 DNELAKPQKTGPQLERQ--ERQAAEGEDDE 837
D+E P+KT P+ + + +++ A G ++E
Sbjct: 1516 DSEFGIPKKTAPKGKGRGAKKRKASGSENE 1545
Score = 40 (19.1 bits), Expect = 2.8e-57, Sum P(5) = 2.8e-57
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 309 DGDPVKIIYEN---VNPRWEVAIAP 330
D + +K +Y++ V P W + I P
Sbjct: 837 DDNLLKFLYDDNQRVEPEWYIPIIP 861
Score = 38 (18.4 bits), Expect = 2.9e-226, Sum P(7) = 2.9e-226
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 816 PQKTGPQLERQERQAAEGEDDEAGSQTQ-EEEDP 848
P +G ++ ++ DDE+ S++ EE +P
Sbjct: 1312 PTSSGKPSAKKVKKRNPWSDDESKSESDLEETEP 1345
Score = 38 (18.4 bits), Expect = 7.1e-196, Sum P(5) = 7.1e-196
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 2057 FQNNQEMETFLKQLAGEV 2074
F+ N + E + QLAG V
Sbjct: 749 FKRNDKREVKVAQLAGSV 766
Score = 38 (18.4 bits), Expect = 7.1e-196, Sum P(5) = 7.1e-196
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 2026 LYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
L+++ EDD +T +K + + F ++
Sbjct: 650 LFRYAGPEDDAAITLAFSKKKIDDRKEWLTNFMEDR 685
Score = 37 (18.1 bits), Expect = 4.2e-226, Sum P(6) = 4.2e-226
Identities = 27/141 (19%), Positives = 54/141 (38%)
Query: 1486 TEESKSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNA----SNE 1541
T+E E + ++K N ++ K + L K +A ++ + +
Sbjct: 1149 TKEKVEELIKQRDAKGREVNDLKRKSPSDLWKEDLAAFVEELDKVEAQEREDVLAGMAGK 1208
Query: 1542 DFLGEFYNKSRLHHLS---TMGSMF-KQYVNELREKHDGVFRGIEAIRKWKTSLGITEDE 1597
G+ K ++ L TM S F ++ V E+ + + ++K K L T +
Sbjct: 1209 AIKGKI-GKPKVKKLQLEETMPSPFGRRIVPEITAMKADASKKL--LKKKKGDLDTTAVK 1265
Query: 1598 -DLEETFSDNPSPSEPEPVIM 1617
+ +E FS P E ++
Sbjct: 1266 VEFDEEFSGTPVEGTGEEALI 1286
Score = 37 (18.1 bits), Expect = 1.6e-43, Sum P(4) = 1.6e-43
Identities = 9/52 (17%), Positives = 24/52 (46%)
Query: 261 KDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDP 312
KD++ ++ +R Y++ VK + ++ + ++ + D + G P
Sbjct: 1086 KDLIQMLVQRGYES----DPVKAWKEAQEKAAEE-EETQNQHDDSSSDSGTP 1132
Score = 37 (18.1 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIK 109
GL+K+F C++ M C+K
Sbjct: 999 GLHKVFKLQTTLTCNSMVLFDHMGCLK 1025
>UNIPROTKB|P11388 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0040016
"embryonic cleavage" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0000819 "sister chromatid segregation" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IDA;IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] [GO:0048015 "phosphatidylinositol-mediated signaling"
evidence=NAS] [GO:0006260 "DNA replication" evidence=NAS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0005814 "centriole" evidence=IDA] [GO:0042826 "histone
deacetylase binding" evidence=IPI] [GO:0007059 "chromosome
segregation" evidence=IMP] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IDA] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0030263 "apoptotic chromosome condensation"
evidence=IDA] [GO:0019035 "viral integration complex" evidence=NAS]
[GO:0045070 "positive regulation of viral genome replication"
evidence=IMP] [GO:0045870 "positive regulation of retroviral genome
replication" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] [GO:0006266 "DNA ligation" evidence=IDA] [GO:0008144
"drug binding" evidence=IDA] [GO:0006974 "response to DNA damage
stimulus" evidence=IDA] [GO:0043065 "positive regulation of
apoptotic process" evidence=IDA] [GO:0005080 "protein kinase C
binding" evidence=IPI] [GO:0006281 "DNA repair" evidence=NAS]
[GO:0043130 "ubiquitin binding" evidence=IMP] [GO:0008301 "DNA
binding, bending" evidence=IDA] [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=TAS]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005737 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0005730 GO:GO:0042493 GO:GO:0000287 GO:GO:0008144
GO:GO:0007568 EMBL:CH471152 GO:GO:0043565 GO:GO:0006281
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006261
DrugBank:DB01204 GO:GO:0008301 GO:GO:0043065 GO:GO:0030263
DrugBank:DB00537 GO:GO:0048015 Gene3D:3.30.565.10 SUPFAM:SSF55874
DrugBank:DB01044 DrugBank:DB04967 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0043130 GO:GO:0009330 GO:GO:0070683 GO:GO:0000712
DrugBank:DB00445 GO:GO:0071107 DrugBank:DB00467 DrugBank:DB01137
DrugBank:DB00978 DrugBank:DB01059 DrugBank:DB01165 DrugBank:DB00487
DrugBank:DB00444 DrugBank:DB00997 DrugBank:DB00773 GO:GO:0000795
GO:GO:0006265 GO:GO:0043566 DrugBank:DB00276 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 EMBL:AC080112
KO:K03164 CTD:7153 HOVERGEN:HBG052998 EMBL:J04088 EMBL:AF071747
EMBL:AF071738 EMBL:AF071739 EMBL:AF071740 EMBL:AF071741
EMBL:AF071742 EMBL:AF071743 EMBL:AF071744 EMBL:AF071745
EMBL:AF071746 EMBL:AJ011741 EMBL:AJ011742 EMBL:AJ011743
EMBL:AJ011744 EMBL:AJ011745 EMBL:AJ011746 EMBL:AJ011747
EMBL:AJ011748 EMBL:AJ011749 EMBL:AJ011750 EMBL:AJ011751
EMBL:AJ011752 EMBL:AJ011753 EMBL:AJ011754 EMBL:AJ011755
EMBL:AJ011756 EMBL:AJ011757 EMBL:AJ011758 EMBL:AF285157
EMBL:AF285158 EMBL:BC140791 EMBL:AF285159 EMBL:AF069522
EMBL:AF064590 IPI:IPI00414101 IPI:IPI00478232 IPI:IPI00879004
IPI:IPI01011132 PIR:A40493 RefSeq:NP_001058.2 UniGene:Hs.156346
PDB:1LWZ PDB:1ZXM PDB:1ZXN PDB:4FM9 PDBsum:1LWZ PDBsum:1ZXM
PDBsum:1ZXN PDBsum:4FM9 ProteinModelPortal:P11388 SMR:P11388
DIP:DIP-33887N IntAct:P11388 MINT:MINT-98770 STRING:P11388
PhosphoSite:P11388 DMDM:13959709 UCD-2DPAGE:P11388 PaxDb:P11388
PRIDE:P11388 Ensembl:ENST00000423485 GeneID:7153 KEGG:hsa:7153
UCSC:uc002huq.3 GeneCards:GC17M038544 H-InvDB:HIX0013797
HGNC:HGNC:11989 HPA:CAB002448 HPA:HPA006458 HPA:HPA026773
MIM:126430 neXtProt:NX_P11388 PharmGKB:PA354 OrthoDB:EOG4KWJS0
BRENDA:5.99.1.3 BindingDB:P11388 ChEMBL:CHEMBL1806 DrugBank:DB00380
DrugBank:DB04576 DrugBank:DB01177 DrugBank:DB00218 DrugBank:DB01179
DrugBank:DB01208 DrugBank:DB00685 DrugBank:DB00385
EvolutionaryTrace:P11388 GenomeRNAi:7153 NextBio:27992
ArrayExpress:P11388 Bgee:P11388 CleanEx:HS_TOP2A
Genevestigator:P11388 GO:GO:0045870 Uniprot:P11388
Length = 1531
Score = 714 (256.4 bits), Expect = 1.9e-241, Sum P(7) = 1.9e-241
Identities = 129/167 (77%), Positives = 152/167 (91%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+PKL+DANDAG +NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+
Sbjct: 438 IPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREAS 497
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
HKQI+ENAEINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFI
Sbjct: 498 HKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFI 557
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN 621
HHNWP+LLR FLEEFITPI+K +K ++E++FYSLPEFEEWK T N
Sbjct: 558 HHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPN 604
Score = 688 (247.2 bits), Expect = 1.9e-241, Sum P(7) = 1.9e-241
Identities = 133/203 (65%), Positives = 159/203 (78%)
Query: 158 EDKVTGV-VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKK 216
E KV + VP +IFG LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VET+ EYKK
Sbjct: 129 EHKVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKK 188
Query: 217 SFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
FKQ W DNM + E+K + +D+T ITF PDL+KFKM SLDKD+V L+ RRAYD A
Sbjct: 189 MFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAG 248
Query: 277 STKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
STKDVKVFLNG KLPVK F+ YV +Y D+ DE G+ +K+I+E VN RWEV + S++GF
Sbjct: 249 STKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVCLTMSEKGF 308
Query: 336 QQVSFVNSIATTKGGRHVDAVVD 358
QQ+SFVNSIAT+KGGRHVD V D
Sbjct: 309 QQISFVNSIATSKGGRHVDYVAD 331
Score = 539 (194.8 bits), Expect = 1.9e-241, Sum P(7) = 1.9e-241
Identities = 104/159 (65%), Positives = 126/159 (79%)
Query: 6 SDFDPDVQQNGNGPSPKKKTPANK-MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMW 64
S P V +N KK A K +SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW
Sbjct: 4 SPLQP-VNENMQVNKIKKNEDAKKRLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMW 62
Query: 65 LMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNN 124
+ + + + RE+T+VPGLYKIFDEILVNA DNKQRDPKM+CI++T++ E N IS+WNN
Sbjct: 63 VYDEDVG-INYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNN 121
Query: 125 GKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTG 163
GKGIPVVEHK EKM+VP +IFG LLTSSNY+D+E KVTG
Sbjct: 122 GKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEKKVTG 160
Score = 343 (125.8 bits), Expect = 1.9e-241, Sum P(7) = 1.9e-241
Identities = 61/97 (62%), Positives = 79/97 (81%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + REIV+NI+R++ GE+PLPM P YKN
Sbjct: 835 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEEPLPMLPSYKN 894
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
FKG I+ +++V++GE+AIL+ +EI+EL V W
Sbjct: 895 FKGTIEELAPNQYVISGEVAILNSTTIEISELPVRTW 931
Score = 200 (75.5 bits), Expect = 1.9e-241, Sum P(7) = 1.9e-241
Identities = 39/61 (63%), Positives = 47/61 (77%)
Query: 396 QMAKTLIDIGVRL--GGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGST 453
Q+ L+D+ + GG+A+K QVKNH+WIF+N LI NPTFDSQTKENMTLQ SFGST
Sbjct: 332 QIVTKLVDVVKKKNKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPKSFGST 391
Query: 454 C 454
C
Sbjct: 392 C 392
Score = 163 (62.4 bits), Expect = 1.9e-241, Sum P(7) = 1.9e-241
Identities = 32/96 (33%), Positives = 55/96 (57%)
Query: 809 HDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERK 868
+D++ K K Q E + E ++++ ++ D ++YLL M W LT E+K
Sbjct: 1082 YDSDPVKAWKEAQQKVPDEEENEESDNEKETEKSDSVTDSGPTFNYLLDMPLWYLTKEKK 1141
Query: 869 NELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
+EL + R++K EL+ LK+K+P+DLW +DL E+
Sbjct: 1142 DELCRLRNEKEQELDTLKRKSPSDLWKEDLATFIEE 1177
Score = 48 (22.0 bits), Expect = 2.2e-229, Sum P(7) = 2.2e-229
Identities = 9/37 (24%), Positives = 23/37 (62%)
Query: 809 HDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEE 845
++N PQ+ G +LE +++ + + E G++T+++
Sbjct: 1241 NENTEGSPQEDGVELEGLKQRLEKKQKREPGTKTKKQ 1277
Score = 44 (20.5 bits), Expect = 5.8e-229, Sum P(7) = 5.8e-229
Identities = 21/91 (23%), Positives = 39/91 (42%)
Query: 817 QKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRD 876
Q+ P++ + + AE ++ + E P +D L G+ L ++K E K
Sbjct: 1217 QRVIPRITIEMKAEAEKKNKKKIKNENTEGSPQEDGVELEGLK-QRLEKKQKREPGTKTK 1275
Query: 877 DKMT-ELNILKKKAPTDLWSDDLDALREKDK 906
+ T +KK + WSD ++ R D+
Sbjct: 1276 KQTTLAFKPIKKGKKRNPWSDS-ESDRSSDE 1305
Score = 41 (19.5 bits), Expect = 5.8e-55, Sum P(5) = 5.8e-55
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 308 EDGDPVKIIYEN---VNPRWEVAIAP 330
+D +K +Y++ V P W + I P
Sbjct: 821 KDDHTLKFLYDDNQRVEPEWYIPIIP 846
Score = 40 (19.1 bits), Expect = 1.9e-241, Sum P(7) = 1.9e-241
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 1585 RKWKTSLGITEDEDLEETFSDNPSPSEPEPVI 1616
R+ T T D D +E FSD ++ E +
Sbjct: 1318 RRAATKTKFTMDLDSDEDFSDFDEKTDDEDFV 1349
Score = 39 (18.8 bits), Expect = 2.5e-86, Sum P(5) = 2.5e-86
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYND 181
LT+ + + K+ G+ ++G T YND
Sbjct: 665 LTNFMEDRRQRKLLGLPEDYLYGQTTTYLTYND 697
Score = 38 (18.4 bits), Expect = 6.0e-198, Sum P(5) = 6.0e-198
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 2057 FQNNQEMETFLKQLAGEV 2074
F+ N + E + QLAG V
Sbjct: 734 FKRNDKREVKVAQLAGSV 751
Score = 38 (18.4 bits), Expect = 3.8e-157, Sum P(6) = 3.8e-157
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 399 KTLIDIGVRLGGMALKPFQVKNHIWI 424
+T +D R G M LKPF +++ I
Sbjct: 192 QTWMDNMGRAGEMELKPFNGEDYTCI 217
Score = 37 (18.1 bits), Expect = 4.0e-241, Sum P(7) = 4.0e-241
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 1281 RKWKTSLGITEDEDLEETFSD 1301
R+ T T D D +E FSD
Sbjct: 1318 RRAATKTKFTMDLDSDEDFSD 1338
Score = 37 (18.1 bits), Expect = 3.2e-228, Sum P(7) = 3.2e-228
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 1148 SEERKGHLRRWRRKEEESTQTVQ 1170
++E+K L R R ++E+ T++
Sbjct: 1137 TKEKKDELCRLRNEKEQELDTLK 1159
>UNIPROTKB|Q64399 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2-beta" species:10030
"Cricetulus longicaudatus" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
GO:GO:0005730 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 PROSITE:PS50880 HOVERGEN:HBG052998 EMBL:X86455
ProteinModelPortal:Q64399 SMR:Q64399 PRIDE:Q64399 Uniprot:Q64399
Length = 1612
Score = 719 (258.2 bits), Expect = 4.4e-241, Sum P(8) = 4.4e-241
Identities = 132/188 (70%), Positives = 161/188 (85%)
Query: 435 FDSQTKENMTLQKGSFGSTC-VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVV 493
F +QT+ N + +PKL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+
Sbjct: 426 FKAQTQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVI 485
Query: 494 GRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRL 553
GRD+YGVFPLRGK+LNVREA+HKQI+ENAEINN++KI+GLQY K Y E +KTLRYG++
Sbjct: 486 GRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKI 545
Query: 554 MIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFE 613
MIMTDQDQDGSHIKGL+INFIHHNWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+
Sbjct: 546 MIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFD 605
Query: 614 EWKEETTN 621
EWK+ N
Sbjct: 606 EWKKHIEN 613
Score = 669 (240.6 bits), Expect = 4.4e-241, Sum P(8) = 4.4e-241
Identities = 131/203 (64%), Positives = 154/203 (75%)
Query: 158 EDKVTGV-VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKK 216
E KV V VP +IFG LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VET+C EYK
Sbjct: 138 EHKVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKH 197
Query: 217 SFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
SFKQ W +NM K + +IK +D+T ITF PDL KFKM LDKD+V L+TRRAYD A
Sbjct: 198 SFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLAKFKMEKLDKDIVALMTRRAYDLAG 257
Query: 277 STKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N RW+V + S++GF
Sbjct: 258 SCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGF 317
Query: 336 QQVSFVNSIATTKGGRHVDAVVD 358
QQ+SFVNSIATTKGGRHVD VVD
Sbjct: 318 QQISFVNSIATTKGGRHVDYVVD 340
Score = 531 (192.0 bits), Expect = 4.4e-241, Sum P(8) = 4.4e-241
Identities = 96/141 (68%), Positives = 119/141 (84%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 30 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVP 88
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 89 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 148
Query: 143 MIFGHLLTSSNYNDEEDKVTG 163
+IFG LLTSSNY+D+E KVTG
Sbjct: 149 LIFGQLLTSSNYDDDEKKVTG 169
Score = 337 (123.7 bits), Expect = 4.4e-241, Sum P(8) = 4.4e-241
Identities = 60/97 (61%), Positives = 77/97 (79%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 844 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 903
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
FKG I G +++ V+GEI ++D + +EITEL V W
Sbjct: 904 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTW 940
Score = 208 (78.3 bits), Expect = 4.4e-241, Sum P(8) = 4.4e-241
Identities = 37/45 (82%), Positives = 41/45 (91%)
Query: 410 GMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC 454
G+++KPFQVKNHIW+FINCLI NPTFDSQTKENMTLQ SFGS C
Sbjct: 357 GVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKC 401
Score = 180 (68.4 bits), Expect = 4.4e-241, Sum P(8) = 4.4e-241
Identities = 41/90 (45%), Positives = 59/90 (65%)
Query: 824 ERQERQAAEGED-----DEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDK 878
E QE+ AAE ED D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K
Sbjct: 1101 EAQEK-AAEEEDTQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDTK 1157
Query: 879 MTELNILKKKAPTDLWSDDLDA-LREKDKI 907
E+N LK+K+P+DLW +DL A + E DK+
Sbjct: 1158 GREVNDLKRKSPSDLWKEDLAAFVEELDKV 1187
Score = 51 (23.0 bits), Expect = 4.4e-241, Sum P(8) = 4.4e-241
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 1084 LDDTMPSAAGRRVEPK 1099
L++TMPS GRR+ P+
Sbjct: 1218 LEETMPSPYGRRIVPE 1233
Score = 48 (22.0 bits), Expect = 1.2e-43, Sum P(4) = 1.2e-43
Identities = 15/75 (20%), Positives = 28/75 (37%)
Query: 214 YKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPD------LTKFKMTSLDKDMVDLI 267
Y+ + WK+ K E DD + + TP + + SL K+ V+ +
Sbjct: 1091 YESDPVRAWKEAQEKAAEEEDTQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEEL 1150
Query: 268 TRRAYDAAASTKDVK 282
++ D+K
Sbjct: 1151 IKQRDTKGREVNDLK 1165
Score = 40 (19.1 bits), Expect = 8.9e-226, Sum P(7) = 8.9e-226
Identities = 16/70 (22%), Positives = 31/70 (44%)
Query: 1123 WESNLRP---SADKAESRKRTQTSQGTESEERKGHLRRWRRKEEESTQTVQVELREGV-- 1177
W+ +L DK E+++R G + KG + + + K+ + +T+ +
Sbjct: 1173 WKEDLAAFVEELDKVEAQEREDILAGMSGKAIKGKVGKPKVKKLQLEETMPSPYGRRIVP 1232
Query: 1178 NISAPKPQAS 1187
I+A K AS
Sbjct: 1233 EITAMKADAS 1242
Score = 40 (19.1 bits), Expect = 1.8e-56, Sum P(5) = 1.8e-56
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 309 DGDPVKIIYEN---VNPRWEVAIAP 330
D + +K +Y++ V P W + I P
Sbjct: 831 DDNLLKFLYDDNQRVEPEWYIPIIP 855
Score = 39 (18.8 bits), Expect = 1.1e-225, Sum P(7) = 1.1e-225
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 828 RQAAEGEDDEAGSQTQEEEDPDKDYD 853
R AAE +EEED D D D
Sbjct: 1350 RAAAERPKYTFDFSEEEEEDADDDDD 1375
Score = 38 (18.4 bits), Expect = 3.2e-196, Sum P(5) = 3.2e-196
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 2057 FQNNQEMETFLKQLAGEV 2074
F+ N + E + QLAG V
Sbjct: 743 FKRNDKREVKVAQLAGSV 760
Score = 38 (18.4 bits), Expect = 3.2e-196, Sum P(5) = 3.2e-196
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 2026 LYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
L+++ EDD +T +K + + F ++
Sbjct: 646 LFRYAGPEDDAAITLAFSKKKIDDRKEWLTNFMEDR 681
Score = 38 (18.4 bits), Expect = 1.3e-42, Sum P(4) = 1.3e-42
Identities = 9/52 (17%), Positives = 24/52 (46%)
Query: 261 KDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDP 312
KD++ ++ +R Y++ V+ + ++ + +D + D + G P
Sbjct: 1080 KDLIQMLVQRGYES----DPVRAWKEAQEKAAEE-EDTQNQHDDSSSDSGTP 1126
Score = 37 (18.1 bits), Expect = 4.4e-241, Sum P(8) = 4.4e-241
Identities = 14/65 (21%), Positives = 24/65 (36%)
Query: 1486 TEESKSEAVNSEESKSEAANP-IESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFL 1544
+E+ ++ ++EE + P KQT K + P A K A + +
Sbjct: 1444 SEDDSAKFDSNEEDTASVFTPSFGLKQTDKVPSKTVAAKKGKPPSDTAPKAKRAPKQKKV 1503
Query: 1545 GEFYN 1549
E N
Sbjct: 1504 VETVN 1508
Score = 37 (18.1 bits), Expect = 9.3e-06, Sum P(4) = 9.3e-06
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIK 109
GL+K+F C++ M C+K
Sbjct: 993 GLHKVFKLQTTLTCNSMVLFDHMGCLK 1019
>UNIPROTKB|Q02880 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2-beta" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0001764 "neuron migration"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0000712 "resolution of
meiotic recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IDA;IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IDA;IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA] [GO:0005080
"protein kinase C binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0042826
"histone deacetylase binding" evidence=IPI] [GO:0000792
"heterochromatin" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0008022
"protein C-terminus binding" evidence=IPI] [GO:0046982 "protein
heterodimerization activity" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0019899 "enzyme binding" evidence=IPI]
[GO:0071778 "WINAC complex" evidence=IDA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005654 GO:GO:0030900 GO:GO:0003682
GO:GO:0006261 GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0071778 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 HOVERGEN:HBG052998 CTD:7155 EMBL:X68060
EMBL:X71911 EMBL:Z15111 EMBL:Z15115 EMBL:M27504 EMBL:AJ011721
EMBL:AJ011722 EMBL:AJ011723 EMBL:AJ011724 EMBL:AJ011725
EMBL:AJ011726 EMBL:AJ011727 EMBL:AJ011728 EMBL:AJ011729
EMBL:AJ011730 EMBL:AJ011731 EMBL:AJ011732 EMBL:X53662 EMBL:U54831
IPI:IPI00027280 IPI:IPI00217709 PIR:S26730 RefSeq:NP_001059.2
UniGene:Hs.475733 PDB:3QX3 PDBsum:3QX3 ProteinModelPortal:Q02880
SMR:Q02880 IntAct:Q02880 STRING:Q02880 PhosphoSite:Q02880
DMDM:20141946 PaxDb:Q02880 PRIDE:Q02880 Ensembl:ENST00000264331
Ensembl:ENST00000435706 GeneID:7155 KEGG:hsa:7155 UCSC:uc003cdj.2
UCSC:uc011awn.1 GeneCards:GC03M025639 H-InvDB:HIX0030807
HGNC:HGNC:11990 HPA:CAB004601 HPA:HPA024120 MIM:126431
neXtProt:NX_Q02880 PharmGKB:PA36672 InParanoid:Q02880 OMA:AKEYFQD
PhylomeDB:Q02880 BindingDB:Q02880 ChEMBL:CHEMBL3396 ChiTaRS:TOP2B
GenomeRNAi:7155 NextBio:27998 ArrayExpress:Q02880 Bgee:Q02880
CleanEx:HS_TOP2B Genevestigator:Q02880 GermOnline:ENSG00000077097
Uniprot:Q02880
Length = 1626
Score = 719 (258.2 bits), Expect = 1.4e-240, Sum P(8) = 1.4e-240
Identities = 132/188 (70%), Positives = 161/188 (85%)
Query: 435 FDSQTKENMTLQKGSFGSTC-VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVV 493
F +QT+ N + +PKL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+
Sbjct: 438 FKAQTQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVI 497
Query: 494 GRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRL 553
GRD+YGVFPLRGK+LNVREA+HKQI+ENAEINN++KI+GLQY K Y E +KTLRYG++
Sbjct: 498 GRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKI 557
Query: 554 MIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFE 613
MIMTDQDQDGSHIKGL+INFIHHNWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+
Sbjct: 558 MIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFD 617
Query: 614 EWKEETTN 621
EWK+ N
Sbjct: 618 EWKKHIEN 625
Score = 667 (239.9 bits), Expect = 1.4e-240, Sum P(8) = 1.4e-240
Identities = 130/203 (64%), Positives = 155/203 (76%)
Query: 158 EDKVTGV-VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKK 216
E KV V VP +IFG LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VET+C EYK
Sbjct: 150 EHKVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKH 209
Query: 217 SFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD+V L+TRRAYD A
Sbjct: 210 SFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAG 269
Query: 277 STKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
S + VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N RW+V + S++GF
Sbjct: 270 SCRGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGF 329
Query: 336 QQVSFVNSIATTKGGRHVDAVVD 358
QQ+SFVNSIATTKGGRHVD VVD
Sbjct: 330 QQISFVNSIATTKGGRHVDYVVD 352
Score = 530 (191.6 bits), Expect = 1.4e-240, Sum P(8) = 1.4e-240
Identities = 96/141 (68%), Positives = 119/141 (84%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 42 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVG-MNCREVTFVP 100
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 101 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 160
Query: 143 MIFGHLLTSSNYNDEEDKVTG 163
+IFG LLTSSNY+D+E KVTG
Sbjct: 161 LIFGQLLTSSNYDDDEKKVTG 181
Score = 337 (123.7 bits), Expect = 1.4e-240, Sum P(8) = 1.4e-240
Identities = 60/97 (61%), Positives = 77/97 (79%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 856 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 915
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
FKG I G +++ V+GEI ++D + +EITEL V W
Sbjct: 916 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTW 952
Score = 208 (78.3 bits), Expect = 1.4e-240, Sum P(8) = 1.4e-240
Identities = 37/45 (82%), Positives = 41/45 (91%)
Query: 410 GMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC 454
G+++KPFQVKNHIW+FINCLI NPTFDSQTKENMTLQ SFGS C
Sbjct: 369 GVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKC 413
Score = 178 (67.7 bits), Expect = 1.4e-240, Sum P(8) = 1.4e-240
Identities = 39/89 (43%), Positives = 57/89 (64%)
Query: 824 ERQERQAAEGED----DEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKM 879
E QE+ A E E D++ S + PD ++Y+L M+ WSLT E+ EL+K+RD K
Sbjct: 1113 EAQEKAAEEDETQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKVEELIKQRDAKG 1170
Query: 880 TELNILKKKAPTDLWSDDLDA-LREKDKI 907
E+N LK+K+P+DLW +DL A + E DK+
Sbjct: 1171 REVNDLKRKSPSDLWKEDLAAFVEELDKV 1199
Score = 50 (22.7 bits), Expect = 1.4e-240, Sum P(8) = 1.4e-240
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 1084 LDDTMPSAAGRRVEPK 1099
L++TMPS GRR+ P+
Sbjct: 1230 LEETMPSPYGRRIIPE 1245
Score = 44 (20.5 bits), Expect = 5.0e-226, Sum P(7) = 5.0e-226
Identities = 17/70 (24%), Positives = 31/70 (44%)
Query: 1123 WESNLRP---SADKAESRKRTQTSQGTESEERKGHLRRWRRKEEESTQTVQVELREGV-- 1177
W+ +L DK ES++R G + KG + + + K+ + +T+ +
Sbjct: 1185 WKEDLAAFVEELDKVESQEREDVLAGMSGKAIKGKVGKPKVKKLQLEETMPSPYGRRIIP 1244
Query: 1178 NISAPKPQAS 1187
I+A K AS
Sbjct: 1245 EITAMKADAS 1254
Score = 44 (20.5 bits), Expect = 3.4e-43, Sum P(4) = 3.4e-43
Identities = 14/75 (18%), Positives = 28/75 (37%)
Query: 214 YKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPD------LTKFKMTSLDKDMVDLI 267
Y+ + WK+ K + DD + + TP + + SL K+ V+ +
Sbjct: 1103 YESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEEL 1162
Query: 268 TRRAYDAAASTKDVK 282
++ D+K
Sbjct: 1163 IKQRDAKGREVNDLK 1177
Score = 40 (19.1 bits), Expect = 3.2e-56, Sum P(5) = 3.2e-56
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 309 DGDPVKIIYEN---VNPRWEVAIAP 330
D + +K +Y++ V P W + I P
Sbjct: 843 DDNLLKFLYDDNQRVEPEWYIPIIP 867
Score = 39 (18.8 bits), Expect = 1.4e-240, Sum P(8) = 1.4e-240
Identities = 26/134 (19%), Positives = 52/134 (38%)
Query: 1390 ESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYLLYTGTDAKPLT 1449
E + T + + P K +K +PG ++ K SA K+ KK ++ ++K
Sbjct: 1288 EEALTPSVPINKGPKPKREKKEPGTRVRKTPTSSGKPSAKKV---KKRNPWSDDESK--- 1341
Query: 1450 KLLQKSYFENTEAPCCSKXXXXXXXXXXXXXXXXDNTEESKSEAVNSEESKSEAANPIES 1509
+S E TE + D +EE +A + ++ ++ ++
Sbjct: 1342 ---SESDLEETEPVVIPRDSLLRRAAAERPKYTFDFSEEEDDDADDDDDDNNDLEE-LKV 1397
Query: 1510 KQTVKTKESKLETV 1523
K + T + + E V
Sbjct: 1398 KASPITNDGEDEFV 1411
Score = 38 (18.4 bits), Expect = 3.4e-226, Sum P(6) = 3.4e-226
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 816 PQKTGPQLERQERQAAEGEDDEAGSQTQ-EEEDP 848
P +G ++ ++ DDE+ S++ EE +P
Sbjct: 1318 PTSSGKPSAKKVKKRNPWSDDESKSESDLEETEP 1351
Score = 38 (18.4 bits), Expect = 7.3e-196, Sum P(5) = 7.3e-196
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 2057 FQNNQEMETFLKQLAGEV 2074
F+ N + E + QLAG V
Sbjct: 755 FKRNDKREVKVAQLAGSV 772
Score = 38 (18.4 bits), Expect = 7.3e-196, Sum P(5) = 7.3e-196
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 2026 LYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
L+++ EDD +T +K + + F ++
Sbjct: 658 LFRYAGPEDDAAITLAFSKKKIDDRKEWLTNFMEDR 693
Score = 37 (18.1 bits), Expect = 4.4e-226, Sum P(6) = 4.4e-226
Identities = 13/66 (19%), Positives = 26/66 (39%)
Query: 1486 TEESKSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLG 1545
T+E E + ++K N ++ K S L +++A + ++ ED L
Sbjct: 1155 TKEKVEELIKQRDAKGREVNDLKRKSP-----SDLWKEDLAAFVEELDKVESQEREDVLA 1209
Query: 1546 EFYNKS 1551
K+
Sbjct: 1210 GMSGKA 1215
Score = 37 (18.1 bits), Expect = 1.2e-05, Sum P(4) = 1.2e-05
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIK 109
GL+K+F C++ M C+K
Sbjct: 1005 GLHKVFKLQTTLTCNSMVLFDHMGCLK 1031
>WB|WBGene00010785 [details] [associations]
symbol:top-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0009792 GO:GO:0006261 GO:GO:0000910 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 GeneTree:ENSGT00390000016222 EMBL:Z49069
EMBL:Z70213 PIR:T23620 RefSeq:NP_496536.1 ProteinModelPortal:Q23670
SMR:Q23670 DIP:DIP-27416N IntAct:Q23670 MINT:MINT-227249
STRING:Q23670 PaxDb:Q23670 EnsemblMetazoa:K12D12.1 GeneID:174825
KEGG:cel:CELE_K12D12.1 CTD:174825 WormBase:K12D12.1
InParanoid:Q23670 OMA:ADNKQND NextBio:885666 Uniprot:Q23670
Length = 1520
Score = 700 (251.5 bits), Expect = 4.3e-240, Sum P(7) = 4.3e-240
Identities = 128/168 (76%), Positives = 147/168 (87%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+PKLEDANDAGTKNS CTLILTEGDSAK+LAVSGL VVGRDKYGVFPLRGKLLNVRE
Sbjct: 473 IPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDKYGVFPLRGKLLNVREGN 532
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
KQI +NAE+N ++KILGLQY KKY T +D KTLRYG+LM+M DQDQDGSHIKGL+INFI
Sbjct: 533 MKQIADNAEVNAMIKILGLQYKKKYETEDDFKTLRYGKLMVMADQDQDGSHIKGLVINFI 592
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNW 622
HH WP+L++ F+EEFITPI+KATK +EE+SFYSLPE+ EW+ T NW
Sbjct: 593 HHFWPSLIQRNFVEEFITPIVKATKGKEEVSFYSLPEYSEWRMNTDNW 640
Score = 679 (244.1 bits), Expect = 4.3e-240, Sum P(7) = 4.3e-240
Identities = 127/202 (62%), Positives = 159/202 (78%)
Query: 158 EDKVTGV-VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKK 216
+ KV V VP +IFG LLTSSNYND+E KVTGGRNGYGAKLCNIFS+KF +ETS +YK
Sbjct: 164 QHKVEKVYVPELIFGTLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTKFTLETSSRDYKS 223
Query: 217 SFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
+FKQ W NM++ P+I + +DFTKITF+PDL KFKM LD D+ L+ RRAYD A
Sbjct: 224 AFKQTWIKNMTRDEEPKIVKSTDEDFTKITFSPDLAKFKMKELDDDICHLMARRAYDVAG 283
Query: 277 STKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQ 336
S+K V VFLNG+++P+K F+DYV++YT + + +G+P+KI YE V RW+VA+A S++GFQ
Sbjct: 284 SSKGVAVFLNGKRIPIKGFEDYVQMYTSQFNNEGEPLKIAYEQVGDRWQVALALSEKGFQ 343
Query: 337 QVSFVNSIATTKGGRHVDAVVD 358
QVSFVNSIATTKGGRHVD V D
Sbjct: 344 QVSFVNSIATTKGGRHVDYVAD 365
Score = 528 (190.9 bits), Expect = 4.3e-240, Sum P(7) = 4.3e-240
Identities = 101/143 (70%), Positives = 121/143 (84%)
Query: 22 KKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITET-MWLMNRETNHMERREITY 80
KK + +M++E IYQKKSQLEHILLRPDTYIGSVE +T MW+ N E + +E+R+I+Y
Sbjct: 53 KKGGGSKQMAIEDIYQKKSQLEHILLRPDTYIGSVEHTEKTPMWVYNMEESKLEQRDISY 112
Query: 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
VPGLYKI+DEILVNA DNKQRDPKMN IKIT+N+E N ISV+NNGKGIPV +HK EK++V
Sbjct: 113 VPGLYKIYDEILVNAADNKQRDPKMNTIKITINKEKNEISVYNNGKGIPVTQHKVEKVYV 172
Query: 141 PTMIFGHLLTSSNYNDEEDKVTG 163
P +IFG LLTSSNYND+E KVTG
Sbjct: 173 PELIFGTLLTSSNYNDDEKKVTG 195
Score = 355 (130.0 bits), Expect = 4.3e-240, Sum P(7) = 4.3e-240
Identities = 63/97 (64%), Positives = 76/97 (78%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPEWY PIIPMVLVNGA+GIGTGW T IPN+NPRE+V NIKR+I GE + PWYKN
Sbjct: 870 RIEPEWYCPIIPMVLVNGAQGIGTGWSTNIPNYNPRELVKNIKRLIAGEPQKALAPWYKN 929
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
F+G+I SRF GE+A+LDD+ +EITEL + +W
Sbjct: 930 FRGKIIQIDPSRFACYGEVAVLDDNTIEITELPIKQW 966
Score = 202 (76.2 bits), Expect = 4.3e-240, Sum P(7) = 4.3e-240
Identities = 40/63 (63%), Positives = 47/63 (74%)
Query: 396 QMAKTLID-IGVRLG--GMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS 452
QM ID I +L M +KPFQ+KNH+W+F+NCLI NPTFDSQTKE MTLQ+ FGS
Sbjct: 366 QMVAKFIDSIKRKLTKTSMNIKPFQIKNHMWVFVNCLIENPTFDSQTKETMTLQQKQFGS 425
Query: 453 TCV 455
TCV
Sbjct: 426 TCV 428
Score = 165 (63.1 bits), Expect = 4.3e-240, Sum P(7) = 4.3e-240
Identities = 37/100 (37%), Positives = 61/100 (61%)
Query: 810 DNELAKPQKTGP-QLERQERQAAEGEDDEA-GSQTQEEEDPDKDYDYLLGMTFWSLTMER 867
+ +L + +++G +L+ + A E+DEA S + E DYDYL+GM L+ E
Sbjct: 1129 EQKLKELRESGEIELDEDDLAAVAVEEDEAISSAAKAVETKLSDYDYLVGMALIKLSEEE 1188
Query: 868 KNELLKKRDDKMTELNILKKKAPTDLWSDDLDA-LREKDK 906
KN+L+K+ ++KM E+ +++KK DLW +DLD + E DK
Sbjct: 1189 KNKLIKESEEKMAEVRVIEKKTWQDLWHEDLDNFVSELDK 1228
Score = 49 (22.3 bits), Expect = 6.4e-228, Sum P(7) = 6.4e-228
Identities = 16/73 (21%), Positives = 28/73 (38%)
Query: 1028 LIPKSQREGAQDSDLENNC-RLDXXXXXXXXXXNSNITXXXXXXXXXXXXXRNPLSSL-D 1085
+I K + DL+N LD +++I R P ++
Sbjct: 1205 VIEKKTWQDLWHEDLDNFVSELDKQEAREKADQDASIKNAAKKLAADAKTGRGPKKNVCT 1264
Query: 1086 DTMPSAAGRRVEP 1098
+ +PS G+R+EP
Sbjct: 1265 EVLPSKDGQRIEP 1277
Score = 46 (21.3 bits), Expect = 4.3e-240, Sum P(7) = 4.3e-240
Identities = 14/57 (24%), Positives = 21/57 (36%)
Query: 1490 KSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGE 1546
K E K E P E K+ K + + ++ +APK + N D E
Sbjct: 1289 KMSQPKKERVKKEPKEPKEPKKVKKEGQDIKKFMSPAAPKTAKKEKSDGFNSDMSEE 1345
Score = 45 (20.9 bits), Expect = 4.3e-195, Sum P(6) = 4.3e-195
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 1149 EERKGHLRRWRRKEEESTQ 1167
EERK L +W R++++ Q
Sbjct: 694 EERKDWLSKWMREKKDRKQ 712
Score = 44 (20.5 bits), Expect = 7.0e-240, Sum P(7) = 7.0e-240
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 1496 SEESKSEAANPIESKQTVKTKESKLETVN--ISAPKPQASSTKNASNED 1542
+E+ S + P K KT E K + V A K + +ED
Sbjct: 1426 AEKKPSTSKKPSPKKAAPKTAEPKSKAVTDFFGASKKNGKKAAGSDDED 1474
Score = 41 (19.5 bits), Expect = 4.2e-227, Sum P(6) = 4.2e-227
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 771 EKDEVHPGPGRKSHPRPIAPKS 792
E+ E P +K P+ APK+
Sbjct: 1424 EEAEKKPSTSKKPSPKKAAPKT 1445
Score = 40 (19.1 bits), Expect = 5.4e-227, Sum P(6) = 5.4e-227
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 1486 TEESKSEAVNSEESKSEAANPIESK--QTVKTKE-----SKLETVNISAPKPQASSTKNA 1538
+EE K++ + E K IE K Q + ++ S+L+ Q +S KNA
Sbjct: 1185 SEEEKNKLIKESEEKMAEVRVIEKKTWQDLWHEDLDNFVSELDKQEAREKADQDASIKNA 1244
Query: 1539 SNE 1541
+ +
Sbjct: 1245 AKK 1247
Score = 39 (18.8 bits), Expect = 2.6e-55, Sum P(4) = 2.6e-55
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 700 IKRMIRGEDPLPMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDD 743
IK M R E+P +K ++F +I + D + ++ LDDD
Sbjct: 230 IKNMTRDEEPKIVKSTDEDFT-KITFSPD---LAKFKMKELDDD 269
Score = 39 (18.8 bits), Expect = 2.9e-42, Sum P(4) = 2.9e-42
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 1344 GIFQGVAIFVNG 1355
G +GVA+F+NG
Sbjct: 283 GSSKGVAVFLNG 294
Score = 38 (18.4 bits), Expect = 3.0e-239, Sum P(7) = 3.0e-239
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 1497 EESKSEAANPIESKQTVKTKESKLETVNISAPK---PQASSTKNASNEDFLG 1545
++ KSE ++ + + + E K T +PK P+ + K+ + DF G
Sbjct: 1408 KKKKSEFSD-LSGGDSDEEAEKKPSTSKKPSPKKAAPKTAEPKSKAVTDFFG 1458
Score = 38 (18.4 bits), Expect = 8.7e-227, Sum P(6) = 8.7e-227
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 1493 AVNSEESKSEAANPIESK 1510
AV +E+ S AA +E+K
Sbjct: 1152 AVEEDEAISSAAKAVETK 1169
Score = 38 (18.4 bits), Expect = 9.3e-189, Sum P(7) = 9.3e-189
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQ 41
SPKKKT K EK KK +
Sbjct: 13 SPKKKTAPKK---EKASPKKKK 31
Score = 38 (18.4 bits), Expect = 1.3e-36, Sum P(4) = 1.3e-36
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 456 PKLEDANDAGTKNSIDCTLILTEGD 480
PK E A+ K+ + ++++TE D
Sbjct: 20 PKKEKASPKKKKDDANESMVMTEED 44
Score = 37 (18.1 bits), Expect = 9.3e-207, Sum P(7) = 9.3e-207
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 710 LPMKPWYKNFKGEI 723
LP+K W +++K ++
Sbjct: 961 LPIKQWTQDYKEKV 974
Score = 37 (18.1 bits), Expect = 8.1e-122, Sum P(7) = 8.1e-122
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 119 ISVWNNGKGIPVVEHKD 135
++V+ NGK IP+ +D
Sbjct: 288 VAVFLNGKRIPIKGFED 304
>UNIPROTKB|Q23670 [details] [associations]
symbol:K12D12.1 "Probable DNA topoisomerase 2" species:6239
"Caenorhabditis elegans" [GO:0009295 "nucleoid" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0009792 GO:GO:0006261 GO:GO:0000910
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 GeneTree:ENSGT00390000016222 EMBL:Z49069
EMBL:Z70213 PIR:T23620 RefSeq:NP_496536.1 ProteinModelPortal:Q23670
SMR:Q23670 DIP:DIP-27416N IntAct:Q23670 MINT:MINT-227249
STRING:Q23670 PaxDb:Q23670 EnsemblMetazoa:K12D12.1 GeneID:174825
KEGG:cel:CELE_K12D12.1 CTD:174825 WormBase:K12D12.1
InParanoid:Q23670 OMA:ADNKQND NextBio:885666 Uniprot:Q23670
Length = 1520
Score = 700 (251.5 bits), Expect = 4.3e-240, Sum P(7) = 4.3e-240
Identities = 128/168 (76%), Positives = 147/168 (87%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+PKLEDANDAGTKNS CTLILTEGDSAK+LAVSGL VVGRDKYGVFPLRGKLLNVRE
Sbjct: 473 IPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDKYGVFPLRGKLLNVREGN 532
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
KQI +NAE+N ++KILGLQY KKY T +D KTLRYG+LM+M DQDQDGSHIKGL+INFI
Sbjct: 533 MKQIADNAEVNAMIKILGLQYKKKYETEDDFKTLRYGKLMVMADQDQDGSHIKGLVINFI 592
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNW 622
HH WP+L++ F+EEFITPI+KATK +EE+SFYSLPE+ EW+ T NW
Sbjct: 593 HHFWPSLIQRNFVEEFITPIVKATKGKEEVSFYSLPEYSEWRMNTDNW 640
Score = 679 (244.1 bits), Expect = 4.3e-240, Sum P(7) = 4.3e-240
Identities = 127/202 (62%), Positives = 159/202 (78%)
Query: 158 EDKVTGV-VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKK 216
+ KV V VP +IFG LLTSSNYND+E KVTGGRNGYGAKLCNIFS+KF +ETS +YK
Sbjct: 164 QHKVEKVYVPELIFGTLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTKFTLETSSRDYKS 223
Query: 217 SFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
+FKQ W NM++ P+I + +DFTKITF+PDL KFKM LD D+ L+ RRAYD A
Sbjct: 224 AFKQTWIKNMTRDEEPKIVKSTDEDFTKITFSPDLAKFKMKELDDDICHLMARRAYDVAG 283
Query: 277 STKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQ 336
S+K V VFLNG+++P+K F+DYV++YT + + +G+P+KI YE V RW+VA+A S++GFQ
Sbjct: 284 SSKGVAVFLNGKRIPIKGFEDYVQMYTSQFNNEGEPLKIAYEQVGDRWQVALALSEKGFQ 343
Query: 337 QVSFVNSIATTKGGRHVDAVVD 358
QVSFVNSIATTKGGRHVD V D
Sbjct: 344 QVSFVNSIATTKGGRHVDYVAD 365
Score = 528 (190.9 bits), Expect = 4.3e-240, Sum P(7) = 4.3e-240
Identities = 101/143 (70%), Positives = 121/143 (84%)
Query: 22 KKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITET-MWLMNRETNHMERREITY 80
KK + +M++E IYQKKSQLEHILLRPDTYIGSVE +T MW+ N E + +E+R+I+Y
Sbjct: 53 KKGGGSKQMAIEDIYQKKSQLEHILLRPDTYIGSVEHTEKTPMWVYNMEESKLEQRDISY 112
Query: 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
VPGLYKI+DEILVNA DNKQRDPKMN IKIT+N+E N ISV+NNGKGIPV +HK EK++V
Sbjct: 113 VPGLYKIYDEILVNAADNKQRDPKMNTIKITINKEKNEISVYNNGKGIPVTQHKVEKVYV 172
Query: 141 PTMIFGHLLTSSNYNDEEDKVTG 163
P +IFG LLTSSNYND+E KVTG
Sbjct: 173 PELIFGTLLTSSNYNDDEKKVTG 195
Score = 355 (130.0 bits), Expect = 4.3e-240, Sum P(7) = 4.3e-240
Identities = 63/97 (64%), Positives = 76/97 (78%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPEWY PIIPMVLVNGA+GIGTGW T IPN+NPRE+V NIKR+I GE + PWYKN
Sbjct: 870 RIEPEWYCPIIPMVLVNGAQGIGTGWSTNIPNYNPRELVKNIKRLIAGEPQKALAPWYKN 929
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
F+G+I SRF GE+A+LDD+ +EITEL + +W
Sbjct: 930 FRGKIIQIDPSRFACYGEVAVLDDNTIEITELPIKQW 966
Score = 202 (76.2 bits), Expect = 4.3e-240, Sum P(7) = 4.3e-240
Identities = 40/63 (63%), Positives = 47/63 (74%)
Query: 396 QMAKTLID-IGVRLG--GMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS 452
QM ID I +L M +KPFQ+KNH+W+F+NCLI NPTFDSQTKE MTLQ+ FGS
Sbjct: 366 QMVAKFIDSIKRKLTKTSMNIKPFQIKNHMWVFVNCLIENPTFDSQTKETMTLQQKQFGS 425
Query: 453 TCV 455
TCV
Sbjct: 426 TCV 428
Score = 165 (63.1 bits), Expect = 4.3e-240, Sum P(7) = 4.3e-240
Identities = 37/100 (37%), Positives = 61/100 (61%)
Query: 810 DNELAKPQKTGP-QLERQERQAAEGEDDEA-GSQTQEEEDPDKDYDYLLGMTFWSLTMER 867
+ +L + +++G +L+ + A E+DEA S + E DYDYL+GM L+ E
Sbjct: 1129 EQKLKELRESGEIELDEDDLAAVAVEEDEAISSAAKAVETKLSDYDYLVGMALIKLSEEE 1188
Query: 868 KNELLKKRDDKMTELNILKKKAPTDLWSDDLDA-LREKDK 906
KN+L+K+ ++KM E+ +++KK DLW +DLD + E DK
Sbjct: 1189 KNKLIKESEEKMAEVRVIEKKTWQDLWHEDLDNFVSELDK 1228
Score = 49 (22.3 bits), Expect = 6.4e-228, Sum P(7) = 6.4e-228
Identities = 16/73 (21%), Positives = 28/73 (38%)
Query: 1028 LIPKSQREGAQDSDLENNC-RLDXXXXXXXXXXNSNITXXXXXXXXXXXXXRNPLSSL-D 1085
+I K + DL+N LD +++I R P ++
Sbjct: 1205 VIEKKTWQDLWHEDLDNFVSELDKQEAREKADQDASIKNAAKKLAADAKTGRGPKKNVCT 1264
Query: 1086 DTMPSAAGRRVEP 1098
+ +PS G+R+EP
Sbjct: 1265 EVLPSKDGQRIEP 1277
Score = 46 (21.3 bits), Expect = 4.3e-240, Sum P(7) = 4.3e-240
Identities = 14/57 (24%), Positives = 21/57 (36%)
Query: 1490 KSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGE 1546
K E K E P E K+ K + + ++ +APK + N D E
Sbjct: 1289 KMSQPKKERVKKEPKEPKEPKKVKKEGQDIKKFMSPAAPKTAKKEKSDGFNSDMSEE 1345
Score = 45 (20.9 bits), Expect = 4.3e-195, Sum P(6) = 4.3e-195
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 1149 EERKGHLRRWRRKEEESTQ 1167
EERK L +W R++++ Q
Sbjct: 694 EERKDWLSKWMREKKDRKQ 712
Score = 44 (20.5 bits), Expect = 7.0e-240, Sum P(7) = 7.0e-240
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 1496 SEESKSEAANPIESKQTVKTKESKLETVN--ISAPKPQASSTKNASNED 1542
+E+ S + P K KT E K + V A K + +ED
Sbjct: 1426 AEKKPSTSKKPSPKKAAPKTAEPKSKAVTDFFGASKKNGKKAAGSDDED 1474
Score = 41 (19.5 bits), Expect = 4.2e-227, Sum P(6) = 4.2e-227
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 771 EKDEVHPGPGRKSHPRPIAPKS 792
E+ E P +K P+ APK+
Sbjct: 1424 EEAEKKPSTSKKPSPKKAAPKT 1445
Score = 40 (19.1 bits), Expect = 5.4e-227, Sum P(6) = 5.4e-227
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 1486 TEESKSEAVNSEESKSEAANPIESK--QTVKTKE-----SKLETVNISAPKPQASSTKNA 1538
+EE K++ + E K IE K Q + ++ S+L+ Q +S KNA
Sbjct: 1185 SEEEKNKLIKESEEKMAEVRVIEKKTWQDLWHEDLDNFVSELDKQEAREKADQDASIKNA 1244
Query: 1539 SNE 1541
+ +
Sbjct: 1245 AKK 1247
Score = 39 (18.8 bits), Expect = 2.6e-55, Sum P(4) = 2.6e-55
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 700 IKRMIRGEDPLPMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDD 743
IK M R E+P +K ++F +I + D + ++ LDDD
Sbjct: 230 IKNMTRDEEPKIVKSTDEDFT-KITFSPD---LAKFKMKELDDD 269
Score = 39 (18.8 bits), Expect = 2.9e-42, Sum P(4) = 2.9e-42
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 1344 GIFQGVAIFVNG 1355
G +GVA+F+NG
Sbjct: 283 GSSKGVAVFLNG 294
Score = 38 (18.4 bits), Expect = 3.0e-239, Sum P(7) = 3.0e-239
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 1497 EESKSEAANPIESKQTVKTKESKLETVNISAPK---PQASSTKNASNEDFLG 1545
++ KSE ++ + + + E K T +PK P+ + K+ + DF G
Sbjct: 1408 KKKKSEFSD-LSGGDSDEEAEKKPSTSKKPSPKKAAPKTAEPKSKAVTDFFG 1458
Score = 38 (18.4 bits), Expect = 8.7e-227, Sum P(6) = 8.7e-227
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 1493 AVNSEESKSEAANPIESK 1510
AV +E+ S AA +E+K
Sbjct: 1152 AVEEDEAISSAAKAVETK 1169
Score = 38 (18.4 bits), Expect = 9.3e-189, Sum P(7) = 9.3e-189
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQ 41
SPKKKT K EK KK +
Sbjct: 13 SPKKKTAPKK---EKASPKKKK 31
Score = 38 (18.4 bits), Expect = 1.3e-36, Sum P(4) = 1.3e-36
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 456 PKLEDANDAGTKNSIDCTLILTEGD 480
PK E A+ K+ + ++++TE D
Sbjct: 20 PKKEKASPKKKKDDANESMVMTEED 44
Score = 37 (18.1 bits), Expect = 9.3e-207, Sum P(7) = 9.3e-207
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 710 LPMKPWYKNFKGEI 723
LP+K W +++K ++
Sbjct: 961 LPIKQWTQDYKEKV 974
Score = 37 (18.1 bits), Expect = 8.1e-122, Sum P(7) = 8.1e-122
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 119 ISVWNNGKGIPVVEHKD 135
++V+ NGK IP+ +D
Sbjct: 288 VAVFLNGKRIPIKGFED 304
>UNIPROTKB|E1BZ19 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005080 "protein kinase C binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0042826 "histone deacetylase
binding" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005829 GO:GO:0005524 GO:GO:0005654 GO:GO:0003682
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:AADN02001127 IPI:IPI00599764
ProteinModelPortal:E1BZ19 Ensembl:ENSGALT00000018432
ArrayExpress:E1BZ19 Uniprot:E1BZ19
Length = 1629
Score = 713 (256.0 bits), Expect = 1.4e-239, Sum P(8) = 1.4e-239
Identities = 128/167 (76%), Positives = 154/167 (92%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+PKL+DANDAG K+S+DCTLILTEGDSAKSLAVSGLGV+GRD+YGVFPLRGK+LNVREA+
Sbjct: 466 IPKLDDANDAGGKHSLDCTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREAS 525
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
HKQI+ENAEINN++KI+GLQY K Y E +K+LRYG++MIMTDQDQDGSHIKGL+INFI
Sbjct: 526 HKQIMENAEINNIIKIVGLQYKKSYEDPESLKSLRYGKIMIMTDQDQDGSHIKGLLINFI 585
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN 621
HHNWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+EWK+ N
Sbjct: 586 HHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHMEN 632
Score = 686 (246.5 bits), Expect = 1.4e-239, Sum P(8) = 1.4e-239
Identities = 133/203 (65%), Positives = 157/203 (77%)
Query: 158 EDKVTGV-VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKK 216
E KV V VP +IFG LLTSSNY+D+E K+ GGRNGYGAKLCNIFS+KF VET+C EYK
Sbjct: 155 EHKVEKVYVPALIFGQLLTSSNYDDDEKKIVGGRNGYGAKLCNIFSTKFTVETACKEYKH 214
Query: 217 SFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
SFKQ W +NM K + P+IK DD+T ITF PDL+KFKM LDKD+V L+TRRAYD A
Sbjct: 215 SFKQTWMNNMMKTSEPKIKHFEGDDYTCITFQPDLSKFKMEKLDKDIVSLMTRRAYDLAG 274
Query: 277 STKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
S K VKV LNG+KLPV F+ YV LY D+ DE G +K+I+E VN RW+V + S++GF
Sbjct: 275 SCKGVKVMLNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHEVVNERWDVCLTLSEKGF 334
Query: 336 QQVSFVNSIATTKGGRHVDAVVD 358
QQ+SFVNSIATTKGGRHVD VVD
Sbjct: 335 QQISFVNSIATTKGGRHVDYVVD 357
Score = 531 (192.0 bits), Expect = 1.4e-239, Sum P(8) = 1.4e-239
Identities = 97/144 (67%), Positives = 119/144 (82%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
S K + KMSVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T
Sbjct: 44 SVNKNDTSKKMSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVT 102
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
+VPGLYKIFDEILVNA DNKQRD M CIKI+++ E+N IS+WNNGKGIPVVEHK EK++
Sbjct: 103 FVPGLYKIFDEILVNAADNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEHKVEKVY 162
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTG 163
VP +IFG LLTSSNY+D+E K+ G
Sbjct: 163 VPALIFGQLLTSSNYDDDEKKIVG 186
Score = 339 (124.4 bits), Expect = 1.4e-239, Sum P(8) = 1.4e-239
Identities = 61/97 (62%), Positives = 78/97 (80%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVLVNGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 863 RVEPEWYIPIIPMVLVNGAEGIGTGWACKLPNYDTREIVNNVRRMLDGLDPHPMLPNYKN 922
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
F+G I G +++VV+GEI ++D + +EITEL V W
Sbjct: 923 FRGTIQELGQNQYVVSGEIFVVDRNTVEITELPVRTW 959
Score = 183 (69.5 bits), Expect = 1.4e-239, Sum P(8) = 1.4e-239
Identities = 33/47 (70%), Positives = 39/47 (82%)
Query: 410 GMALKPFQVKN--HIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC 454
G+++KPFQ N HIW+F+NCLI NP+FDSQTKENMTLQ SFGS C
Sbjct: 374 GVSVKPFQASNFNHIWVFVNCLIENPSFDSQTKENMTLQPKSFGSKC 420
Score = 174 (66.3 bits), Expect = 1.4e-239, Sum P(8) = 1.4e-239
Identities = 41/90 (45%), Positives = 57/90 (63%)
Query: 824 ERQERQAAEGED-----DEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDK 878
E QE+ AAE ED D+A S + PD ++Y+L M+ WSLT E+ EL+K RD K
Sbjct: 1120 EAQEK-AAEEEDPQNANDDASSASGSTSGPD--FNYILNMSLWSLTKEKVEELIKHRDSK 1176
Query: 879 MTELNILKKKAPTDLWSDDLDA-LREKDKI 907
ELN LK+K+ +DLW +DL A + E +K+
Sbjct: 1177 ERELNDLKRKSASDLWKEDLAAFVEELEKV 1206
Score = 51 (23.0 bits), Expect = 1.4e-239, Sum P(8) = 1.4e-239
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 1084 LDDTMPSAAGRRVEPK 1099
L++TMPS GRR+ P+
Sbjct: 1237 LEETMPSPFGRRIVPQ 1252
Score = 47 (21.6 bits), Expect = 5.0e-44, Sum P(4) = 5.0e-44
Identities = 16/75 (21%), Positives = 28/75 (37%)
Query: 214 YKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKI---TFTPD---LTKFKMTSLDKDMVDLI 267
Y+ + WK+ K E + DD + T PD + + SL K+ V+ +
Sbjct: 1110 YESDPVKAWKEAQEKAAEEEDPQNANDDASSASGSTSGPDFNYILNMSLWSLTKEKVEEL 1169
Query: 268 TRRAYDAAASTKDVK 282
+ D+K
Sbjct: 1170 IKHRDSKERELNDLK 1184
Score = 42 (19.8 bits), Expect = 1.4e-239, Sum P(8) = 1.4e-239
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 1486 TEESKSEAVNSEESKSEA-ANPIESKQTVK----TKESKLETVNIS-----APKPQASST 1535
T++ ++ + EE + ++P KQT K T +K V++ APK + T
Sbjct: 1465 TDDDTTKLDSDEEDSTPVFSSPFAPKQTEKMLSKTVAAKKAKVDVPPKPKRAPKAKKMET 1524
Query: 1536 KNASNEDFLG 1545
N+ ++ G
Sbjct: 1525 VNSDSDSEFG 1534
Score = 40 (19.1 bits), Expect = 1.9e-55, Sum P(6) = 1.9e-55
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 309 DGDPVKIIYEN---VNPRWEVAIAP 330
D + +K +Y++ V P W + I P
Sbjct: 850 DDNLLKFLYDDNQRVEPEWYIPIIP 874
Score = 39 (18.8 bits), Expect = 8.4e-225, Sum P(7) = 8.4e-225
Identities = 18/71 (25%), Positives = 26/71 (36%)
Query: 835 DDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLW 894
D+E G E D G L E+K + R + + KK + W
Sbjct: 1283 DEEFGGVQAEGGGDDTVNTAASGTKTPKLKREKKEPGTRVRRAPSSTKSSAKKVKKRNPW 1342
Query: 895 SDDLDALREKD 905
SDD ++ E D
Sbjct: 1343 SDD-ESKSESD 1352
Score = 39 (18.8 bits), Expect = 3.4e-43, Sum P(4) = 3.4e-43
Identities = 18/76 (23%), Positives = 34/76 (44%)
Query: 153 NYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCS 212
N ND+ +G F ++L S ++ ++KV +L SK E +
Sbjct: 1133 NANDDASSASGSTSGPDFNYILNMSLWSLTKEKVE--------ELIKHRDSK---ERELN 1181
Query: 213 EYK-KSFKQVWKDNMS 227
+ K KS +WK++++
Sbjct: 1182 DLKRKSASDLWKEDLA 1197
Score = 38 (18.4 bits), Expect = 1.2e-194, Sum P(5) = 1.2e-194
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 2057 FQNNQEMETFLKQLAGEV 2074
F+ N + E + QLAG V
Sbjct: 762 FKRNDKREVKVAQLAGSV 779
Score = 38 (18.4 bits), Expect = 1.2e-194, Sum P(5) = 1.2e-194
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 2026 LYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
L+++ EDD +T +K + + F ++
Sbjct: 665 LFRYAGPEDDAAITLAFSKKKIDDRKEWLTNFMEDR 700
Score = 38 (18.4 bits), Expect = 1.2e-106, Sum P(6) = 1.2e-106
Identities = 16/73 (21%), Positives = 30/73 (41%)
Query: 19 PSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWL-------MNRETN 71
PS +T N K + K QL + + G +E I W+ +N++ +
Sbjct: 399 PSFDSQTKENMTLQPKSFGSKCQLSEKFFKAASNCGIIESILN--WVKFKAQTQLNKKCS 456
Query: 72 HMERREITYVPGL 84
++ +I +P L
Sbjct: 457 SVKHSKIKGIPKL 469
Score = 37 (18.1 bits), Expect = 6.6e-138, Sum P(7) = 6.6e-138
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 497 KYGVFPLRGKLLNVREA-THK--QILENAEINNLVKILGLQYSKKYTTVEDM 545
K+ V KL A HK ++ + N++V + KKY TV+D+
Sbjct: 995 KFVVKMTEEKLAQAEAAGLHKVFKLQTSLTCNSMVLFDHMGCLKKYETVQDI 1046
>UNIPROTKB|F1M7A0 [details] [associations]
symbol:Top2a "DNA topoisomerase 2" species:10116 "Rattus
norvegicus" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059 GO:GO:0005654
GO:GO:0005730 GO:GO:0005814 GO:GO:0008144 GO:GO:0045944
GO:GO:0003682 GO:GO:0040016 GO:GO:0006974 GO:GO:0043065
GO:GO:0030263 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0000793
GO:GO:0006266 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GO:GO:0045870 GeneTree:ENSGT00390000016222
IPI:IPI00562522 Ensembl:ENSRNOT00000050725 ArrayExpress:F1M7A0
Uniprot:F1M7A0
Length = 1528
Score = 1748 (620.4 bits), Expect = 1.2e-238, Sum P(5) = 1.2e-238
Identities = 357/614 (58%), Positives = 432/614 (70%)
Query: 22 KKKTPANK--MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
KKK K +SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T
Sbjct: 17 KKKNEDGKKRLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVT 75
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
+VPGLYKIFDEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+
Sbjct: 76 FVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDAENNLISIWNNGKGIPVVEHKVEKMY 135
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCN 199
VP +IFG LLTSSNY+D+E KVTG GRNGYGAKLCN
Sbjct: 136 VPALIFGQLLTSSNYDDDEKKVTG-------------------------GRNGYGAKLCN 170
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSL 259
IFS+KF VET+ EYKK FKQ W DNM + E+K S +D+T ITF PDL+KFKM SL
Sbjct: 171 IFSTKFTVETASREYKKMFKQTWMDNMGRAGDMELKPFSGEDYTCITFQPDLSKFKMQSL 230
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYE 318
DKD+V L+ RRAYD A STKDVKVFLNG +LPVK F+ YV +Y D+ DE G+ +K+++E
Sbjct: 231 DKDIVALMVRRAYDIAGSTKDVKVFLNGNRLPVKGFRSYVDMYLKDKVDETGNALKVVHE 290
Query: 319 NVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAXXXXXXXXXXXXXXDLGCT 378
VNPRWEV + S++GFQQ+SFVNSIAT+KGGRHVD V D G
Sbjct: 291 QVNPRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVSKLVDVVKKKNKG-GVA 349
Query: 379 I--------IMLFGXXXXXXXXXXLQMAKTLIDIGVRLGGMALKPFQ-VKNHIWIFINCL 429
+ I + G Q TL RL + +KN I I
Sbjct: 350 VKAHQLPGHIQITGSSFVAHDGLLTQSPPTLYPSSARLSNTCQAQHKFIKNAIGCGIVES 409
Query: 430 IVN-PTFDSQTKENMTLQKGSFGSTC-VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAV 487
I+N F +Q + N +PKL+DANDAG++NS +CTLILTEGDSAK+LAV
Sbjct: 410 ILNWVKFKAQIQLNKKCSAVKHNRIKGIPKLDDANDAGSRNSAECTLILTEGDSAKTLAV 469
Query: 488 SGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKT 547
SGLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENAEINN++KI+GLQY K Y + +KT
Sbjct: 470 SGLGVVGRDKYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKT 529
Query: 548 LRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFY 607
LRYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LLR FLEEFITPI+K +K ++E++FY
Sbjct: 530 LRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEIAFY 589
Query: 608 SLPEFEEWKEETTN 621
SLPEFEEWK N
Sbjct: 590 SLPEFEEWKSANPN 603
Score = 349 (127.9 bits), Expect = 1.2e-238, Sum P(5) = 1.2e-238
Identities = 60/97 (61%), Positives = 79/97 (81%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 834 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEEPLPMLPSYKN 893
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
+KG I+ +++V+NGE+AIL+ +EITEL + W
Sbjct: 894 YKGTIEELASNQYVINGEVAILNSTTIEITELPIRTW 930
Score = 189 (71.6 bits), Expect = 1.2e-238, Sum P(5) = 1.2e-238
Identities = 40/96 (41%), Positives = 57/96 (59%)
Query: 809 HDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERK 868
+D++ K K Q +E + E E+ E+ S + E ++YLL M W LT E+K
Sbjct: 1081 YDSDPVKAWKEAQQKVPEEEENEENEESESESSSPAAES-GPTFNYLLDMPLWYLTKEKK 1139
Query: 869 NELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
+EL K+RD+K ELN LKKK P+DLW +DL A E+
Sbjct: 1140 DELCKQRDEKEQELNTLKKKTPSDLWKEDLAAFVEE 1175
Score = 44 (20.5 bits), Expect = 1.5e-217, Sum P(3) = 1.5e-217
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 1595 EDEDLEETFSDNPSPS-EPEPVIMHI-DMDCFFVS 1627
E+E+ EE+ S++ SP+ E P ++ DM ++++
Sbjct: 1101 ENEENEESESESSSPAAESGPTFNYLLDMPLWYLT 1135
Score = 42 (19.8 bits), Expect = 2.4e-217, Sum P(3) = 2.4e-217
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 1487 EESKSEAVNSEESKSEAANPI-ESKQT 1512
EE ++E +EES+SE+++P ES T
Sbjct: 1098 EEEENE--ENEESESESSSPAAESGPT 1122
Score = 39 (18.8 bits), Expect = 1.2e-238, Sum P(5) = 1.2e-238
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 1082 SSLDDTMPSAAGRRVEPK 1099
+ + + +PS G+RV P+
Sbjct: 1203 AQISEVLPSPVGKRVIPQ 1220
Score = 39 (18.8 bits), Expect = 1.2e-238, Sum P(5) = 1.2e-238
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1130 SADKAESRKRTQTSQGTESEERKGHLR 1156
S+D ++S S+G S++ KG R
Sbjct: 1468 SSDSSDSEFEKAISKGATSKKPKGEER 1494
Score = 39 (18.8 bits), Expect = 5.0e-217, Sum P(3) = 5.0e-217
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 1486 TEESKSEAVNSEESKSEAANPIESK 1510
T+E K E + K + N ++ K
Sbjct: 1135 TKEKKDELCKQRDEKEQELNTLKKK 1159
Score = 38 (18.4 bits), Expect = 8.9e-182, Sum P(2) = 8.9e-182
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 2057 FQNNQEMETFLKQLAGEV 2074
F+ N + E + QLAG V
Sbjct: 733 FKRNDKREVKVAQLAGSV 750
Score = 38 (18.4 bits), Expect = 6.9e-06, Sum P(4) = 6.9e-06
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 308 EDGDPVKIIYEN---VNPRWEVAIAP 330
+D ++ +Y++ V P W + I P
Sbjct: 820 KDDHTLRFLYDDNQRVEPEWYIPIIP 845
Score = 37 (18.1 bits), Expect = 1.4e-219, Sum P(4) = 1.4e-219
Identities = 21/86 (24%), Positives = 35/86 (40%)
Query: 816 PQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKR 875
P++ P++ + + D + +E+D D+D+ + L T M KN KK
Sbjct: 1310 PREKEPRIAATKAKFTADLDSDDDFSGLDEKDEDEDF-FPLDDTPPKTKMPPKNT--KKA 1366
Query: 876 DDKMTELNILKKKAPTDLWSDDLDAL 901
L K DL SD D++
Sbjct: 1367 ------LKPQKSSTSVDLESDGKDSV 1386
>RGD|62048 [details] [associations]
symbol:Top2a "topoisomerase (DNA) II alpha" species:10116 "Rattus
norvegicus" [GO:0000287 "magnesium ion binding" evidence=ISO;ISS]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0003677 "DNA binding"
evidence=ISO;TAS] [GO:0003682 "chromatin binding" evidence=ISO;IDA]
[GO:0003916 "DNA topoisomerase activity" evidence=IDA] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISO;IDA] [GO:0005080 "protein kinase C binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IDA;TAS]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006261 "DNA-dependent DNA
replication" evidence=IBA] [GO:0006265 "DNA topological change"
evidence=ISO;IDA] [GO:0006266 "DNA ligation" evidence=ISO]
[GO:0006312 "mitotic recombination" evidence=IBA] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0007059
"chromosome segregation" evidence=ISO;IBA] [GO:0007420 "brain
development" evidence=IEP] [GO:0007568 "aging" evidence=IEP]
[GO:0008022 "protein C-terminus binding" evidence=ISO] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISO] [GO:0008144 "drug
binding" evidence=ISO] [GO:0008301 "DNA binding, bending"
evidence=ISO;ISS] [GO:0009295 "nucleoid" evidence=IBA] [GO:0009330
"DNA topoisomerase complex (ATP-hydrolyzing)" evidence=ISO;IDA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0021702 "cerebellar
Purkinje cell differentiation" evidence=IEP] [GO:0021707 "cerebellar
granule cell differentiation" evidence=IEP] [GO:0030261 "chromosome
condensation" evidence=ISO] [GO:0030263 "apoptotic chromosome
condensation" evidence=ISO] [GO:0040016 "embryonic cleavage"
evidence=ISO] [GO:0042493 "response to drug" evidence=IEP]
[GO:0042803 "protein homodimerization activity" evidence=ISO]
[GO:0042826 "histone deacetylase binding" evidence=ISO] [GO:0043065
"positive regulation of apoptotic process" evidence=ISO] [GO:0043130
"ubiquitin binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0043566 "structure-specific DNA binding"
evidence=IDA] [GO:0045070 "positive regulation of viral genome
replication" evidence=ISO] [GO:0045870 "positive regulation of
retroviral genome replication" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046982 "protein heterodimerization activity"
evidence=ISO] [GO:0071107 "response to parathyroid hormone stimulus"
evidence=IEP] [GO:0000228 "nuclear chromosome" evidence=ISO]
[GO:0005814 "centriole" evidence=ISO] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 RGD:62048 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005654 GO:GO:0005730 GO:GO:0005814 GO:GO:0042493
GO:GO:0000287 GO:GO:0008144 GO:GO:0007568 GO:GO:0043565
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0006261 GO:GO:0008301 GO:GO:0043065 GO:GO:0030263
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0009330 GO:GO:0070683 GO:GO:0000712 GO:GO:0071107
GO:GO:0000795 GO:GO:0006265 GO:GO:0043566 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164 CTD:7153
HOGENOM:HOG000216693 HOVERGEN:HBG052998 OrthoDB:EOG4KWJS0
GO:GO:0045870 EMBL:Z46372 EMBL:Z19552 EMBL:Z29676 IPI:IPI00193944
PIR:A48536 PIR:JN0598 RefSeq:NP_071519.2 UniGene:Rn.90996
ProteinModelPortal:P41516 SMR:P41516 STRING:P41516 PRIDE:P41516
GeneID:360243 KEGG:rno:360243 BindingDB:P41516 ChEMBL:CHEMBL3400
NextBio:672745 ArrayExpress:P41516 Genevestigator:P41516
Uniprot:P41516
Length = 1526
Score = 1712 (607.7 bits), Expect = 7.7e-235, Sum P(5) = 7.7e-235
Identities = 353/613 (57%), Positives = 428/613 (69%)
Query: 22 KKKTPANK--MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
KKK K +SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T
Sbjct: 17 KKKNEDGKKRLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVT 75
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
+VPGLYKIFDEILVNA DNKQRDPKM+CI++T+ N IS+WNNGKGIPVVEHK EKM+
Sbjct: 76 FVPGLYKIFDEILVNAADNKQRDPKMSCIRVTM-MRNNLISIWNNGKGIPVVEHKVEKMY 134
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCN 199
VP +IFG LLTSSNY+D+E KVTG GRNGYGAKLCN
Sbjct: 135 VPALIFGQLLTSSNYDDDEKKVTG-------------------------GRNGYGAKLCN 169
Query: 200 IFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSL 259
IFS+KF VET+ EYKK FKQ W DNM + E+K S +D+T ITF PDL+KFKM SL
Sbjct: 170 IFSTKFTVETASREYKKMFKQTWMDNMGRAGDMELKPFSGEDYTCITFQPDLSKFKMQSL 229
Query: 260 DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYE 318
DKD+V L+ RRAYD A STKDVKVFLNG +LPVK F+ YV +Y D+ DE G+ +K+++E
Sbjct: 230 DKDIVALMVRRAYDIAGSTKDVKVFLNGNRLPVKGFRSYVDMYLKDKVDETGNALKVVHE 289
Query: 319 NVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAXXXXXXXXXX-------XX 371
VNPRWEV + S++GFQQ+SFVNSIAT+KGGRHVD V D
Sbjct: 290 QVNPRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVSKLVDVVKKKNKGGVAV 349
Query: 372 XXDLGCTIIMLFGXXXXXXXXXXLQMAKTLIDIGVRLGGMA-LKPFQVKNHIWIFINCLI 430
D + +FG Q + + G L +K I I I
Sbjct: 350 KADQVKNHMWIFGNAVIENPTFDSQTKENMTLQAKSFGSTCQLSEKFIKAAIGCGIVESI 409
Query: 431 VN-PTFDSQTKENMTLQKGSFGSTC-VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVS 488
+N F +Q + N +PKL+DANDAG++NS +CTLILTEGDSAK+LAVS
Sbjct: 410 LNWVKFKAQIQLNKKCSAVKHNRIKGIPKLDDANDAGSRNSAECTLILTEGDSAKTLAVS 469
Query: 489 GLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTL 548
GLGVVGRDKYGVFPLRGK+LNVREA+HKQI+ENAEINN++KI+GLQY K Y + +KTL
Sbjct: 470 GLGVVGRDKYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTL 529
Query: 549 RYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYS 608
RYG++MIMTDQDQDGSHIKGL+INFIHHNWP+LLR FLEEFITPI+K +K ++E++FYS
Sbjct: 530 RYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEIAFYS 589
Query: 609 LPEFEEWKEETTN 621
LPEFEEWK N
Sbjct: 590 LPEFEEWKSTNPN 602
Score = 349 (127.9 bits), Expect = 7.7e-235, Sum P(5) = 7.7e-235
Identities = 60/97 (61%), Positives = 79/97 (81%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 833 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEEPLPMLPSYKN 892
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
+KG I+ +++V+NGE+AIL+ +EITEL + W
Sbjct: 893 YKGTIEELASNQYVINGEVAILNSTTIEITELPIRTW 929
Score = 189 (71.6 bits), Expect = 7.7e-235, Sum P(5) = 7.7e-235
Identities = 40/96 (41%), Positives = 57/96 (59%)
Query: 809 HDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERK 868
+D++ K K Q +E + E E+ E+ S T + ++YLL M W LT E+K
Sbjct: 1080 YDSDPVKAWKEAQQKVPEEEENEENEESESES-TSPAAESGPTFNYLLDMPLWYLTKEKK 1138
Query: 869 NELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
+EL K+RD+K ELN LKKK P+DLW +DL A E+
Sbjct: 1139 DELCKQRDEKEQELNTLKKKTPSDLWKEDLAAFVEE 1174
Score = 44 (20.5 bits), Expect = 9.4e-214, Sum P(3) = 9.4e-214
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 1595 EDEDLEETFSDNPSPS-EPEPVIMHI-DMDCFFVS 1627
E+E+ EE+ S++ SP+ E P ++ DM ++++
Sbjct: 1100 ENEENEESESESTSPAAESGPTFNYLLDMPLWYLT 1134
Score = 41 (19.5 bits), Expect = 2.0e-213, Sum P(3) = 2.0e-213
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 1487 EESKSEAVNSEESKSEAANPI-ESKQT 1512
EE ++E +EES+SE+ +P ES T
Sbjct: 1097 EEEENE--ENEESESESTSPAAESGPT 1121
Score = 39 (18.8 bits), Expect = 7.7e-235, Sum P(5) = 7.7e-235
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 1082 SSLDDTMPSAAGRRVEPK 1099
+ + + +PS G+RV P+
Sbjct: 1202 AQISEVLPSPVGKRVIPQ 1219
Score = 39 (18.8 bits), Expect = 7.7e-235, Sum P(5) = 7.7e-235
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1130 SADKAESRKRTQTSQGTESEERKGHLR 1156
S+D ++S S+G S++ KG R
Sbjct: 1466 SSDSSDSEFEKAISKGATSKKLKGEER 1492
Score = 39 (18.8 bits), Expect = 3.2e-213, Sum P(3) = 3.2e-213
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 1486 TEESKSEAVNSEESKSEAANPIESK 1510
T+E K E + K + N ++ K
Sbjct: 1134 TKEKKDELCKQRDEKEQELNTLKKK 1158
Score = 38 (18.4 bits), Expect = 6.8e-216, Sum P(4) = 6.8e-216
Identities = 29/134 (21%), Positives = 48/134 (35%)
Query: 771 EKDEVHPGP-GRKSHPRPIAP--KSYKXXXXXXXXXXXXVFHDNELAKPQKTGPQLERQE 827
++ + PG +K P P K+ K N P++ P++ +
Sbjct: 1260 KRQKREPGTRAKKQTTLPFKPIKKAQKQNPWSDSESDMSSNESNFDVPPREKEPRIAATK 1319
Query: 828 RQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKK 887
+ D + +E+D D+D+ + L T M KN KK L K
Sbjct: 1320 AKFTADLDSDDDFSGLDEKDEDEDF-FPLDDTPPKTKMPPKNT--KKA------LKPQKS 1370
Query: 888 KAPTDLWSDDLDAL 901
DL SD D++
Sbjct: 1371 STSVDLESDGKDSV 1384
Score = 38 (18.4 bits), Expect = 5.7e-178, Sum P(2) = 5.7e-178
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 2057 FQNNQEMETFLKQLAGEV 2074
F+ N + E + QLAG V
Sbjct: 732 FKRNDKREVKVAQLAGSV 749
Score = 38 (18.4 bits), Expect = 6.9e-06, Sum P(4) = 6.9e-06
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 308 EDGDPVKIIYEN---VNPRWEVAIAP 330
+D ++ +Y++ V P W + I P
Sbjct: 819 KDDHTLRFLYDDNQRVEPEWYIPIIP 844
>FB|FBgn0003732 [details] [associations]
symbol:Top2 "Topoisomerase 2" species:7227 "Drosophila
melanogaster" [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=NAS;IDA]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
[GO:0016590 "ACF complex" evidence=IDA] [GO:0008623 "CHRAC"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP;TAS] [GO:0007126
"meiosis" evidence=TAS] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005694 "chromosome"
evidence=IDA] [GO:0051310 "metaphase plate congression"
evidence=IDA] [GO:0000819 "sister chromatid segregation"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000182
"rDNA binding" evidence=IDA] [GO:0003696 "satellite DNA binding"
evidence=IDA] [GO:0006342 "chromatin silencing" evidence=IDA]
[GO:0007076 "mitotic chromosome condensation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
[GO:0009295 "nucleoid" evidence=IBA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IBA] [GO:0044774 "mitotic DNA integrity
checkpoint" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0007095 GO:GO:0007052 EMBL:AE014134 GO:GO:0003729
GO:GO:0006261 GO:GO:0006342 Gene3D:3.30.565.10 SUPFAM:SSF55874
GO:GO:0007076 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0006312 GO:GO:0008623 GO:GO:0070683
GO:GO:0000712 GO:GO:0003696 GO:GO:0051310 GO:GO:0000182
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 GO:GO:0000400 KO:K03164
GeneTree:ENSGT00390000016222 ChiTaRS:TOP2A OMA:AKEYFQD EMBL:X61209
PIR:S02160 RefSeq:NP_476760.1 UniGene:Dm.22886
ProteinModelPortal:P15348 SMR:P15348 STRING:P15348 PaxDb:P15348
PRIDE:P15348 EnsemblMetazoa:FBtr0081287 EnsemblMetazoa:FBtr0332320
GeneID:35225 KEGG:dme:Dmel_CG10223 CTD:35225 FlyBase:FBgn0003732
InParanoid:P15348 OrthoDB:EOG4HQC04 PhylomeDB:P15348
BindingDB:P15348 ChEMBL:CHEMBL2671 GenomeRNAi:35225 NextBio:792468
Bgee:P15348 GermOnline:CG10223 Uniprot:P15348
Length = 1447
Score = 747 (268.0 bits), Expect = 3.4e-233, Sum P(5) = 3.4e-233
Identities = 141/170 (82%), Positives = 153/170 (90%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+PKLEDAN+AG KNSI CTLILTEGDSAKSLAVSGLGV+GRD YGVFPLRGKLLNVREA
Sbjct: 418 IPKLEDANEAGGKNSIKCTLILTEGDSAKSLAVSGLGVIGRDLYGVFPLRGKLLNVREAN 477
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
KQ+ ENAEINNL KI+GLQY KKY T +D+KTLRYG++MIMTDQDQDGSHIKGL+INFI
Sbjct: 478 FKQLSENAEINNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIMTDQDQDGSHIKGLLINFI 537
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHT 624
H NWP LLRLPFLEEFITPI+KATK EELSFYSLPEFEEWK +T N HT
Sbjct: 538 HTNWPELLRLPFLEEFITPIVKATKKNEELSFYSLPEFEEWKNDTANHHT 587
Score = 704 (252.9 bits), Expect = 3.4e-233, Sum P(5) = 3.4e-233
Identities = 134/195 (68%), Positives = 157/195 (80%)
Query: 165 VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKD 224
VPTMIFGHLLTSSNYND+E KVTGGRNGYGAKLCNIFS+ F VET+ EYKKSFKQ W +
Sbjct: 118 VPTMIFGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTSFTVETATREYKKSFKQTWGN 177
Query: 225 NMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVF 284
NM K + +IK + D+T+ITF+PDL KFKM LD+D+V L++RRAYD AAS+K V VF
Sbjct: 178 NMGKASDVQIKDFNGTDYTRITFSPDLAKFKMDRLDEDIVALMSRRAYDVAASSKGVSVF 237
Query: 285 LNGEKLPVKNFQDYVKLYTDRQDED-GDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNS 343
LNG KL V+NF+DY+ L+ D+D G P+KI++E N RWEVA PSDRGFQQVSFVNS
Sbjct: 238 LNGNKLGVRNFKDYIDLHIKNTDDDSGPPIKIVHEVANERWEVACCPSDRGFQQVSFVNS 297
Query: 344 IATTKGGRHVDAVVD 358
IAT KGGRHVD VVD
Sbjct: 298 IATYKGGRHVDHVVD 312
Score = 515 (186.3 bits), Expect = 3.4e-233, Sum P(5) = 3.4e-233
Identities = 96/137 (70%), Positives = 115/137 (83%)
Query: 28 NK-MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYK 86
NK +S+E++YQKKSQLEHILLRPD+YIGSVE E MW+ + N M ++EI++VPGLYK
Sbjct: 5 NKALSIEQMYQKKSQLEHILLRPDSYIGSVEFTKELMWVYDNSQNRMVQKEISFVPGLYK 64
Query: 87 IFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFG 146
IFDEILVNA DNKQRD MN IKI ++ E N +SVWNNG+GIPV HK++KM+VPTMIFG
Sbjct: 65 IFDEILVNAADNKQRDKSMNTIKIDIDPERNMVSVWNNGQGIPVTMHKEQKMYVPTMIFG 124
Query: 147 HLLTSSNYNDEEDKVTG 163
HLLTSSNYND+E KVTG
Sbjct: 125 HLLTSSNYNDDEKKVTG 141
Score = 348 (127.6 bits), Expect = 3.4e-233, Sum P(5) = 3.4e-233
Identities = 60/97 (61%), Positives = 76/97 (78%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP WY+PIIPMVLVNGAEGIGTGW TKI N+NPREI+ N+++MI G++P M PWYKN
Sbjct: 815 KIEPLWYLPIIPMVLVNGAEGIGTGWSTKISNYNPREIMKNLRKMINGQEPSVMHPWYKN 874
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
F G ++Y D R++ G I IL ++LEI+EL VG W
Sbjct: 875 FLGRMEYVSDGRYIQTGNIQILSGNRLEISELPVGVW 911
Score = 211 (79.3 bits), Expect = 1.8e-176, Sum P(5) = 1.8e-176
Identities = 38/81 (46%), Positives = 53/81 (65%)
Query: 409 GGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTCVPKLEDANDAGTKN 468
GG+ +KPFQV+NH+W+F+NCLI NPTFDSQTKENMTLQ+ FGS C + N+
Sbjct: 328 GGINIKPFQVRNHLWVFVNCLIENPTFDSQTKENMTLQQKGFGSKCTLSEKFINNMSKSG 387
Query: 469 SIDCTLILTEGDSAKSLAVSG 489
++ L + + +A +G
Sbjct: 388 IVESVLAWAKFKAQNDIAKTG 408
Score = 194 (73.4 bits), Expect = 3.4e-233, Sum P(5) = 3.4e-233
Identities = 40/95 (42%), Positives = 59/95 (62%)
Query: 810 DNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKN 869
D E + ++ P + + ++ E + ++A + + K +DYLLGM+ W LT E+KN
Sbjct: 1085 DEEDEEEEEAAPSVSSKAKKEKEVDPEKAFKKLTDV----KKFDYLLGMSMWMLTEEKKN 1140
Query: 870 ELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
ELLK+RD K++EL L+KK P LW DDLDAL K
Sbjct: 1141 ELLKQRDTKLSELESLRKKTPEMLWLDDLDALESK 1175
Score = 48 (22.0 bits), Expect = 7.7e-218, Sum P(5) = 7.7e-218
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 810 DNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYD 853
D +K P +R R E +DD+ + E++D D D++
Sbjct: 1407 DESSGGAKKKAPPKKR--RAVIESDDDDI--EIDEDDDDDSDFN 1446
Score = 44 (20.5 bits), Expect = 3.2e-201, Sum P(5) = 3.2e-201
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 688 IPNHNPREIVDNIKRMIRGEDPLPMKPWYKNFKGE 722
+ N + + D + + RG P P+K W + K E
Sbjct: 1047 VENKQRKAMCDELLK--RGYRPDPVKEWQRRIKME 1079
Score = 42 (19.8 bits), Expect = 3.3e-217, Sum P(5) = 3.3e-217
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 817 QKTGPQLERQERQAAEGEDDEAGSQTQEEED 847
++ P+ ER R+ A + D + + EEED
Sbjct: 1349 EEVTPRAERPGRRQASKKIDYSSLFSDEEED 1379
Score = 40 (19.1 bits), Expect = 4.3e-216, Sum P(6) = 4.3e-216
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 1491 SEAVNSEESKSEAANPIESKQTVKTKE 1517
+E + E+ + E A P S + K KE
Sbjct: 1081 AEQADEEDEEEEEAAPSVSSKAKKEKE 1107
Score = 38 (18.4 bits), Expect = 8.7e-217, Sum P(5) = 8.7e-217
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 827 ERQAAEGEDDEAGSQTQEEEDPDK 850
+R A G +DE+ +++ P K
Sbjct: 1398 KRPAKRGREDESSGGAKKKAPPKK 1421
Score = 38 (18.4 bits), Expect = 8.7e-217, Sum P(5) = 8.7e-217
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 1254 TMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEET 1298
+M + ++ NEL ++ D +E++RK + +D D E+
Sbjct: 1130 SMWMLTEEKKNELLKQRDTKLSELESLRKKTPEMLWLDDLDALES 1174
Score = 38 (18.4 bits), Expect = 4.3e-216, Sum P(6) = 4.3e-216
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 1558 TMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEET 1602
+M + ++ NEL ++ D +E++RK + +D D E+
Sbjct: 1130 SMWMLTEEKKNELLKQRDTKLSELESLRKKTPEMLWLDDLDALES 1174
Score = 38 (18.4 bits), Expect = 3.5e-42, Sum P(3) = 3.5e-42
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 297 DYVKLYTDRQDEDGDPV 313
DY L++D ++EDG V
Sbjct: 1368 DYSSLFSD-EEEDGGNV 1383
Score = 38 (18.4 bits), Expect = 3.4e-40, Sum P(4) = 3.4e-40
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 1441 TGTDAKPLTKLLQKSYFENTEAPCC 1465
T D+ P K++ + E E CC
Sbjct: 259 TDDDSGPPIKIVHEVANERWEVACC 283
>UNIPROTKB|E9PCY5 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007409 "axonogenesis" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005634 GO:GO:0001764 GO:GO:0005694 GO:GO:0030900
GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 HGNC:HGNC:11990 ChiTaRS:TOP2B EMBL:AC093416
IPI:IPI00925477 ProteinModelPortal:E9PCY5 SMR:E9PCY5
Ensembl:ENST00000424225 ArrayExpress:E9PCY5 Bgee:E9PCY5
Uniprot:E9PCY5
Length = 1150
Score = 719 (258.2 bits), Expect = 7.7e-233, Sum P(6) = 7.7e-233
Identities = 132/188 (70%), Positives = 161/188 (85%)
Query: 435 FDSQTKENMTLQKGSFGSTC-VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVV 493
F +QT+ N + +PKL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+
Sbjct: 433 FKAQTQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVI 492
Query: 494 GRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRL 553
GRD+YGVFPLRGK+LNVREA+HKQI+ENAEINN++KI+GLQY K Y E +KTLRYG++
Sbjct: 493 GRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKI 552
Query: 554 MIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFE 613
MIMTDQDQDGSHIKGL+INFIHHNWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+
Sbjct: 553 MIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFD 612
Query: 614 EWKEETTN 621
EWK+ N
Sbjct: 613 EWKKHIEN 620
Score = 667 (239.9 bits), Expect = 7.7e-233, Sum P(6) = 7.7e-233
Identities = 130/203 (64%), Positives = 155/203 (76%)
Query: 158 EDKVTGV-VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKK 216
E KV V VP +IFG LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VET+C EYK
Sbjct: 145 EHKVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKH 204
Query: 217 SFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LDKD+V L+TRRAYD A
Sbjct: 205 SFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAG 264
Query: 277 STKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
S + VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N RW+V + S++GF
Sbjct: 265 SCRGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGF 324
Query: 336 QQVSFVNSIATTKGGRHVDAVVD 358
QQ+SFVNSIATTKGGRHVD VVD
Sbjct: 325 QQISFVNSIATTKGGRHVDYVVD 347
Score = 530 (191.6 bits), Expect = 7.7e-233, Sum P(6) = 7.7e-233
Identities = 96/141 (68%), Positives = 119/141 (84%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 37 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVG-MNCREVTFVP 95
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 96 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 155
Query: 143 MIFGHLLTSSNYNDEEDKVTG 163
+IFG LLTSSNY+D+E KVTG
Sbjct: 156 LIFGQLLTSSNYDDDEKKVTG 176
Score = 337 (123.7 bits), Expect = 7.7e-233, Sum P(6) = 7.7e-233
Identities = 60/97 (61%), Positives = 77/97 (79%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 851 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 910
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
FKG I G +++ V+GEI ++D + +EITEL V W
Sbjct: 911 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTW 947
Score = 208 (78.3 bits), Expect = 7.7e-233, Sum P(6) = 7.7e-233
Identities = 37/45 (82%), Positives = 41/45 (91%)
Query: 410 GMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC 454
G+++KPFQVKNHIW+FINCLI NPTFDSQTKENMTLQ SFGS C
Sbjct: 364 GVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKC 408
Score = 69 (29.3 bits), Expect = 7.7e-233, Sum P(6) = 7.7e-233
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 824 ERQERQAAEGED----DEAGSQTQEEEDPDKDYDYLLGMTFWSLT 864
E QE+ A E E D++ S + PD ++Y+L M+ WSLT
Sbjct: 1108 EAQEKAAEEDETQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLT 1150
Score = 40 (19.1 bits), Expect = 7.2e-47, Sum P(3) = 7.2e-47
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 309 DGDPVKIIYEN---VNPRWEVAIAP 330
D + +K +Y++ V P W + I P
Sbjct: 838 DDNLLKFLYDDNQRVEPEWYIPIIP 862
Score = 38 (18.4 bits), Expect = 1.1e-198, Sum P(5) = 1.1e-198
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 2057 FQNNQEMETFLKQLAGEV 2074
F+ N + E + QLAG V
Sbjct: 750 FKRNDKREVKVAQLAGSV 767
Score = 38 (18.4 bits), Expect = 1.1e-198, Sum P(5) = 1.1e-198
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 2026 LYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
L+++ EDD +T +K + + F ++
Sbjct: 653 LFRYAGPEDDAAITLAFSKKKIDDRKEWLTNFMEDR 688
Score = 38 (18.4 bits), Expect = 8.9e-45, Sum P(2) = 8.9e-45
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 214 YKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTP 249
Y+ + WK+ K + DD + + TP
Sbjct: 1098 YESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTP 1133
>UNIPROTKB|E9PTY5 [details] [associations]
symbol:Top2a "DNA topoisomerase 2" species:10116 "Rattus
norvegicus" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 IPI:IPI00193944 Ensembl:ENSRNOT00000044306
ArrayExpress:E9PTY5 Uniprot:E9PTY5
Length = 1526
Score = 711 (255.3 bits), Expect = 3.5e-228, Sum P(8) = 3.5e-228
Identities = 128/167 (76%), Positives = 152/167 (91%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+PKL+DANDAG++NS +CTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+
Sbjct: 437 IPKLDDANDAGSRNSAECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREAS 496
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
HKQI+ENAEINN++KI+GLQY K Y + +KTLRYG++MIMTDQDQDGSHIKGL+INFI
Sbjct: 497 HKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFI 556
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN 621
HHNWP+LLR FLEEFITPI+K +K ++E++FYSLPEFEEWK N
Sbjct: 557 HHNWPSLLRHRFLEEFITPIVKVSKNKQEIAFYSLPEFEEWKSANPN 603
Score = 696 (250.1 bits), Expect = 3.5e-228, Sum P(8) = 3.5e-228
Identities = 133/203 (65%), Positives = 160/203 (78%)
Query: 158 EDKVTGV-VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKK 216
E KV + VP +IFG LLTSSNY+D+E KVTGGRNGYGAKLCNIFS+KF VET+ EYKK
Sbjct: 128 EHKVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKK 187
Query: 217 SFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
FKQ W DNM + E+K S +D+T ITF PDL+KFKM SLDKD+V L+ RRAYD A
Sbjct: 188 MFKQTWMDNMGRAGDMELKPFSGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAG 247
Query: 277 STKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
STKDVKVFLNG +LPVK F+ YV +Y D+ DE G+ +K+++E VNPRWEV + S++GF
Sbjct: 248 STKDVKVFLNGNRLPVKGFRSYVDMYLKDKVDETGNALKVVHEQVNPRWEVCLTMSEKGF 307
Query: 336 QQVSFVNSIATTKGGRHVDAVVD 358
QQ+SFVNSIAT+KGGRHVD V D
Sbjct: 308 QQISFVNSIATSKGGRHVDYVAD 330
Score = 535 (193.4 bits), Expect = 3.5e-228, Sum P(8) = 3.5e-228
Identities = 100/144 (69%), Positives = 121/144 (84%)
Query: 22 KKKTPANK--MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
KKK K +SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T
Sbjct: 17 KKKNEDGKKRLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVT 75
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
+VPGLYKIFDEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+
Sbjct: 76 FVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDAENNLISIWNNGKGIPVVEHKVEKMY 135
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTG 163
VP +IFG LLTSSNY+D+E KVTG
Sbjct: 136 VPALIFGQLLTSSNYDDDEKKVTG 159
Score = 349 (127.9 bits), Expect = 3.5e-228, Sum P(8) = 3.5e-228
Identities = 60/97 (61%), Positives = 79/97 (81%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW KIPN + RE+V+NI+R++ GE+PLPM P YKN
Sbjct: 834 RVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEEPLPMLPSYKN 893
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
+KG I+ +++V+NGE+AIL+ +EITEL + W
Sbjct: 894 YKGTIEELASNQYVINGEVAILNSTTIEITELPIRTW 930
Score = 189 (71.6 bits), Expect = 3.5e-228, Sum P(8) = 3.5e-228
Identities = 40/96 (41%), Positives = 57/96 (59%)
Query: 809 HDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERK 868
+D++ K K Q +E + E E+ E+ S + E ++YLL M W LT E+K
Sbjct: 1081 YDSDPVKAWKEAQQKVPEEEENEENEESESESSSPAAES-GPTFNYLLDMPLWYLTKEKK 1139
Query: 869 NELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
+EL K+RD+K ELN LKKK P+DLW +DL A E+
Sbjct: 1140 DELCKQRDEKEQELNTLKKKTPSDLWKEDLAAFVEE 1175
Score = 47 (21.6 bits), Expect = 3.5e-228, Sum P(8) = 3.5e-228
Identities = 23/81 (28%), Positives = 36/81 (44%)
Query: 396 QMAKTLIDIGVRL--GGMALKPFQVKNHIWIFINCLIVNPTFDSQTK----ENMTLQKGS 449
Q+ L+D+ + GG+A+K QV I +F++ I N + NM + S
Sbjct: 331 QIVSKLVDVVKKKNKGGVAVKAHQVCMCICVFMHKFIKNTELKAPASLLITANMERSRSS 390
Query: 450 FGSTCVPKLEDANDAGTKNSI 470
F + V L+ A G SI
Sbjct: 391 FPNANVFVLK-AIGCGIVESI 410
Score = 44 (20.5 bits), Expect = 2.9e-214, Sum P(6) = 2.9e-214
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 1595 EDEDLEETFSDNPSPS-EPEPVIMHI-DMDCFFVS 1627
E+E+ EE+ S++ SP+ E P ++ DM ++++
Sbjct: 1101 ENEENEESESESSSPAAESGPTFNYLLDMPLWYLT 1135
Score = 42 (19.8 bits), Expect = 4.7e-214, Sum P(6) = 4.7e-214
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 1487 EESKSEAVNSEESKSEAANPI-ESKQT 1512
EE ++E +EES+SE+++P ES T
Sbjct: 1098 EEEENE--ENEESESESSSPAAESGPT 1122
Score = 39 (18.8 bits), Expect = 3.5e-228, Sum P(8) = 3.5e-228
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 1082 SSLDDTMPSAAGRRVEPK 1099
+ + + +PS G+RV P+
Sbjct: 1203 AQISEVLPSPVGKRVIPQ 1220
Score = 39 (18.8 bits), Expect = 3.5e-228, Sum P(8) = 3.5e-228
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1130 SADKAESRKRTQTSQGTESEERKGHLR 1156
S+D ++S S+G S++ KG R
Sbjct: 1466 SSDSSDSEFEKAISKGATSKKPKGEER 1492
Score = 39 (18.8 bits), Expect = 9.8e-214, Sum P(6) = 9.8e-214
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 1486 TEESKSEAVNSEESKSEAANPIESK 1510
T+E K E + K + N ++ K
Sbjct: 1135 TKEKKDELCKQRDEKEQELNTLKKK 1159
Score = 39 (18.8 bits), Expect = 3.6e-159, Sum P(7) = 3.6e-159
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 399 KTLIDIGVRLGGMALKPFQVKNHIWI 424
+T +D R G M LKPF +++ I
Sbjct: 191 QTWMDNMGRAGDMELKPFSGEDYTCI 216
Score = 38 (18.4 bits), Expect = 5.7e-182, Sum P(5) = 5.7e-182
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 2057 FQNNQEMETFLKQLAGEV 2074
F+ N + E + QLAG V
Sbjct: 733 FKRNDKREVKVAQLAGSV 750
Score = 38 (18.4 bits), Expect = 8.3e-57, Sum P(5) = 8.3e-57
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 308 EDGDPVKIIYEN---VNPRWEVAIAP 330
+D ++ +Y++ V P W + I P
Sbjct: 820 KDDHTLRFLYDDNQRVEPEWYIPIIP 845
Score = 37 (18.1 bits), Expect = 8.2e-213, Sum P(7) = 8.2e-213
Identities = 21/86 (24%), Positives = 35/86 (40%)
Query: 816 PQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKR 875
P++ P++ + + D + +E+D D+D+ + L T M KN KK
Sbjct: 1308 PREKEPRIAATKAKFTADLDSDDDFSGLDEKDEDEDF-FPLDDTPPKTKMPPKNT--KKA 1364
Query: 876 DDKMTELNILKKKAPTDLWSDDLDAL 901
L K DL SD D++
Sbjct: 1365 ------LKPQKSSTSVDLESDGKDSV 1384
>POMBASE|SPBC1A4.03c [details] [associations]
symbol:top2 "DNA topoisomerase II" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=NAS] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IMP] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IGI;IDA;IMP] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006265 "DNA topological change" evidence=IGI;IDA;IMP]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=ISO] [GO:0006325 "chromatin organization" evidence=IGI]
[GO:0006406 "mRNA export from nucleus" evidence=IMP] [GO:0007076
"mitotic chromosome condensation" evidence=IMP] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IGI] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 PomBase:SPBC1A4.03c Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0006406
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0007076 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006325 GO:GO:0000228
GO:GO:0006271 GO:GO:0000712 GO:GO:0042790 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 OMA:AKEYFQD EMBL:X04326 PIR:T39851
RefSeq:NP_595805.1 ProteinModelPortal:P08096 SMR:P08096
STRING:P08096 EnsemblFungi:SPBC1A4.03c.1 GeneID:2540541
KEGG:spo:SPBC1A4.03c OrthoDB:EOG4XPTPZ NextBio:20801667
Uniprot:P08096
Length = 1485
Score = 570 (205.7 bits), Expect = 5.1e-194, Sum P(8) = 5.1e-194
Identities = 109/202 (53%), Positives = 146/202 (72%)
Query: 159 DKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSF 218
DK +P +IFG+LLTSSNY+D + KVTGGRNGYGAKLCNIFS++FVVET+ E K +
Sbjct: 176 DKEKIYIPELIFGNLLTSSNYDDNQKKVTGGRNGYGAKLCNIFSTEFVVETADKERMKKY 235
Query: 219 KQVWKDNMSKVTSPEIKSGSK-DDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAS 277
KQ W DNMS+ + P I S K D++TKITF PDL KF M +D DMV +I RR YD A +
Sbjct: 236 KQTWYDNMSRKSEPVITSLKKPDEYTKITFKPDLAKFGMDKIDDDMVSIIKRRIYDMAGT 295
Query: 278 TKDVKVFLNGEKLPVKNFQDYVKLYTDRQDE-DGDPVKIIYENVNPRWEVAIAPSDRGFQ 336
++ KV+LN E++ + F+ YV++Y + D +P ++IYE+VN RW+VA A SD F+
Sbjct: 296 VRETKVYLNNERISISGFKKYVEMYLASDTKPDEEPPRVIYEHVNDRWDVAFAVSDGQFK 355
Query: 337 QVSFVNSIATTKGGRHVDAVVD 358
QVSFVN+I+T +GG HV+ V +
Sbjct: 356 QVSFVNNISTIRGGTHVNYVAN 377
Score = 567 (204.7 bits), Expect = 5.1e-194, Sum P(8) = 5.1e-194
Identities = 118/187 (63%), Positives = 138/187 (73%)
Query: 440 KENMTLQKGSFGS----TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGR 495
K + L KG G T + KLEDAN AGTK S C LILTEGDSAKSLAVSGL VVGR
Sbjct: 463 KADQQLSKGDGGLRSRITGLTKLEDANKAGTKESHKCVLILTEGDSAKSLAVSGLSVVGR 522
Query: 496 DKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMI 555
D YGVFPLRGKLLNVREA+H QIL N EI + KI+G + K YT D+K LRYG LMI
Sbjct: 523 DYYGVFPLRGKLLNVREASHSQILNNKEIQAIKKIMGFTHKKTYT---DVKGLRYGHLMI 579
Query: 556 MTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEE 614
MTDQD DGSHIKGLIIN++ ++P+LL++P FL +FITPIIK T+ + +FY+LPE+E
Sbjct: 580 MTDQDHDGSHIKGLIINYLESSYPSLLQIPGFLIQFITPIIKCTRGNQVQAFYTLPEYEY 639
Query: 615 WKEETTN 621
WKE N
Sbjct: 640 WKEANNN 646
Score = 446 (162.1 bits), Expect = 5.1e-194, Sum P(8) = 5.1e-194
Identities = 86/162 (53%), Positives = 113/162 (69%)
Query: 2 SSDESDFDPDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITE 61
S S+ P V NGNG S +V YQ+ + EH+L RPDTYIGS+EP T
Sbjct: 54 SMTASEQIPLVTNNGNGNS----------NVSTQYQRLTPREHVLRRPDTYIGSIEPTTS 103
Query: 62 TMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISV 121
MW+ + E N ++ + +TYVPGLYKIFDEI+VNA DNK RDP MN +K+T++ E N IS+
Sbjct: 104 EMWVFDSEKNKLDYKAVTYVPGLYKIFDEIIVNAADNKVRDPNMNTLKVTLDPEANVISI 163
Query: 122 WNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTG 163
+NNGKGIP+ H EK+++P +IFG+LLTSSNY+D + KVTG
Sbjct: 164 YNNGKGIPIEIHDKEKIYIPELIFGNLLTSSNYDDNQKKVTG 205
Score = 288 (106.4 bits), Expect = 5.1e-194, Sum P(8) = 5.1e-194
Identities = 55/114 (48%), Positives = 74/114 (64%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLP-MKPWYKN 718
IEPE+Y+PI+PMVLVNGAEGIGTGW T IPN+NP++I N++ M+ GE PL M PWY+
Sbjct: 866 IEPEYYVPILPMVLVNGAEGIGTGWSTFIPNYNPKDITANLRHMLNGE-PLEIMTPWYRG 924
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWXXXXXXXXXXXXHGAEK 772
F+G I R+ ++G I + ++K+EITEL + W G EK
Sbjct: 925 FRGSITKVAPDRYKISGIINQIGENKVEITELPIRFWTQDMKEYLEAGLVGTEK 978
Score = 182 (69.1 bits), Expect = 5.1e-194, Sum P(8) = 5.1e-194
Identities = 43/88 (48%), Positives = 58/88 (65%)
Query: 813 LAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELL 872
++KP+K G L E + A E++++G +Q+E D D Y+YLL M WSLT ER ELL
Sbjct: 1114 ISKPKK-G-HLVDLEVENALAEEEQSGDVSQDE-DSDA-YNYLLSMPLWSLTYERYVELL 1169
Query: 873 KKRDDKMTELNILKKKAPTDLWSDDLDA 900
KK+D+ M EL+ L KK P +LW DLDA
Sbjct: 1170 KKKDEVMAELDALIKKTPKELWLHDLDA 1197
Score = 140 (54.3 bits), Expect = 5.1e-194, Sum P(8) = 5.1e-194
Identities = 23/42 (54%), Positives = 33/42 (78%)
Query: 413 LKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC 454
+K FQ+KN++ +F+NC I NP+FDSQTKE +T + +FGS C
Sbjct: 396 VKAFQIKNYVQVFVNCQIENPSFDSQTKETLTTKVSAFGSQC 437
Score = 59 (25.8 bits), Expect = 3.5e-181, Sum P(8) = 3.5e-181
Identities = 28/81 (34%), Positives = 36/81 (44%)
Query: 1496 SEESKSEAANPIESKQTVKTKESKLE-TVNISAPKPQASSTKNASNEDFLGEFYNKSRLH 1554
+E EA N ES + VK K S+ + T N+ A K S ED L EFY
Sbjct: 1002 TEAGMKEALN--ESLE-VKFKLSRTQATSNMIAFDASGRIKKYDSVEDILTEFYEV---- 1054
Query: 1555 HLSTMGSMFKQYVNELREKHD 1575
L T + VNEL ++ D
Sbjct: 1055 RLRTYQRRKEHMVNELEKRFD 1075
Score = 54 (24.1 bits), Expect = 5.1e-194, Sum P(8) = 5.1e-194
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 2208 TLATIDTFFTNKGKPPDQLNNPRPGPSNST-ITPGPSNSTLPPGPSNSTLPPGPSNS 2263
T+ + NKGK + P + I PG S+ST P S + PP S+S
Sbjct: 1379 TITSTKASAKNKGKKASSVKKQSPEDDDDDFIIPG-SSST-PKASSTNAEPPEDSDS 1433
Score = 48 (22.0 bits), Expect = 4.9e-180, Sum P(8) = 4.9e-180
Identities = 23/116 (19%), Positives = 48/116 (41%)
Query: 1122 GWESNLRPSADKAESRKRTQTSQGTESEERKGHLRRWRRKEEESTQTVQVELREGVNISA 1181
G + L S + RTQ + + + G ++++ E+ T+ +V LR
Sbjct: 1005 GMKEALNESLEVKFKLSRTQATSNMIAFDASGRIKKYDSVEDILTEFYEVRLR------T 1058
Query: 1182 PKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMF---KQYVNQLISLQQDKQLP 1234
+ + N + F F N++R H+ G + K+ + ++ L++ K P
Sbjct: 1059 YQRRKEHMVNELEKRF-DRFSNQARFIHMIIEGELVVSKKKKKDLIVELKEKKFQP 1113
Score = 44 (20.5 bits), Expect = 5.1e-194, Sum P(8) = 5.1e-194
Identities = 22/99 (22%), Positives = 46/99 (46%)
Query: 1740 NALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPSPSPILDMSTSI 1799
N + +DI++E+L++ + ++R + +P + T R P ST++
Sbjct: 1203 NKVMDDIQREMLEEEQSSRDFVNRTKK--KPRGKS-------TGTRKPRAIAGSSSSTAV 1253
Query: 1800 LDTTTSHILSSNVSLQEMRTMLREWMCESQPEPS-DIEM 1837
+S S + ++ +T+L E+ +PE S DI +
Sbjct: 1254 KKEASSESKPSTTN-RKQQTLL-EFAASKEPEKSSDINI 1290
Score = 43 (20.2 bits), Expect = 6.5e-194, Sum P(8) = 6.5e-194
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 1130 SADKAESRKRTQTSQGTESEERK 1152
S+D +SRKR+Q+ ++ +K
Sbjct: 1315 SSDSGKSRKRSQSVDSEDAGSKK 1337
Score = 42 (19.8 bits), Expect = 8.3e-194, Sum P(8) = 8.3e-194
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 1129 PSADKAESRKRTQTSQGTESEE 1150
P D ++S K + SQ +SE+
Sbjct: 1311 PGLDSSDSGKSRKRSQSVDSED 1332
Score = 41 (19.5 bits), Expect = 3.5e-97, Sum P(7) = 3.5e-97
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 230 TSPEIKSGSKDDFTKITFTPDLTKFKMTSLD-KDMVDLIT 268
T + + S K TPDL + +TS+ + + L+T
Sbjct: 26 TKRKASTTSSKSRAKKASTPDLRQTSLTSMTASEQIPLVT 65
Score = 40 (19.1 bits), Expect = 1.3e-193, Sum P(8) = 1.3e-193
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 1484 DNTEESKSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDF 1543
D+++ KS S+ SE A SK+ VK + KP A++ ++ +ED
Sbjct: 1314 DSSDSGKSRK-RSQSVDSEDAG---SKKPVKKIAASASGRGRKTNKPVATTIFSSDDEDD 1369
Query: 1544 L 1544
L
Sbjct: 1370 L 1370
Score = 40 (19.1 bits), Expect = 2.4e-155, Sum P(8) = 2.4e-155
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 1282 KWKTSLGITEDEDLEETFSD 1301
K+ LG ++ +D++ FSD
Sbjct: 653 KYYKGLGTSDHDDMKSYFSD 672
Score = 40 (19.1 bits), Expect = 8.0e-154, Sum P(7) = 8.0e-154
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 1586 KWKTSLGITEDEDLEETFSD 1605
K+ LG ++ +D++ FSD
Sbjct: 653 KYYKGLGTSDHDDMKSYFSD 672
Score = 40 (19.1 bits), Expect = 5.9e-90, Sum P(3) = 5.9e-90
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 429 LIVNPTFDSQTKENMTLQKGSFGSTCVPKLEDAND 463
+ V+P+FDS + +M Q SF V ED +D
Sbjct: 1451 IYVDPSFDSMDEPSM--QDDSF---IVDNDEDVDD 1480
Score = 38 (18.4 bits), Expect = 2.2e-193, Sum P(8) = 2.2e-193
Identities = 9/39 (23%), Positives = 23/39 (58%)
Query: 1497 EESKSEAANPIESKQTVKTKESKLETVNISAPKPQASST 1535
E + ++ + I+ ++ ++ ++S + VN + KP+ ST
Sbjct: 1199 EHAWNKVMDDIQ-REMLEEEQSSRDFVNRTKKKPRGKST 1236
Score = 38 (18.4 bits), Expect = 4.3e-179, Sum P(7) = 4.3e-179
Identities = 18/70 (25%), Positives = 28/70 (40%)
Query: 1705 DFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSRE 1764
D + Y E I ++ E+ N F L E +E L++ + LSR
Sbjct: 964 DMKEYLEAGLVGTEKIRKFIVDYESHHGEGNVHFNVTLTEAGMKEALNESLEVKFKLSRT 1023
Query: 1765 QNTTEPLAQD 1774
Q T+ +A D
Sbjct: 1024 QATSNMIAFD 1033
Score = 38 (18.4 bits), Expect = 9.7e-32, Sum P(5) = 9.7e-32
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 133 HKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVV 165
HK V + +GHL+ ++ + + + G++
Sbjct: 562 HKKTYTDVKGLRYGHLMIMTDQDHDGSHIKGLI 594
Score = 37 (18.1 bits), Expect = 1.8e-113, Sum P(7) = 1.8e-113
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 537 KKYTTVEDMKTLRY 550
KKY +VED+ T Y
Sbjct: 1039 KKYDSVEDILTEFY 1052
>UNIPROTKB|F1MU48 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9913 "Bos
taurus" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0042826
"histone deacetylase binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005080 "protein kinase C binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001764 "neuron migration"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005654 GO:GO:0030900 GO:GO:0003682
GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:DAAA02061099 EMBL:DAAA02061100 EMBL:DAAA02061101
EMBL:DAAA02061102 IPI:IPI01003475 Ensembl:ENSBTAT00000006030
Uniprot:F1MU48
Length = 1599
Score = 719 (258.2 bits), Expect = 1.3e-189, Sum P(7) = 1.3e-189
Identities = 132/188 (70%), Positives = 161/188 (85%)
Query: 435 FDSQTKENMTLQKGSFGSTC-VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVV 493
F +QT+ N + +PKL+DANDAG K+S++CTLILTEGDSAKSLAVSGLGV+
Sbjct: 417 FKAQTQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVI 476
Query: 494 GRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRL 553
GRD+YGVFPLRGK+LNVREA+HKQI+ENAEINN++KI+GLQY K Y E +KTLRYG++
Sbjct: 477 GRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKI 536
Query: 554 MIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFE 613
MIMTDQDQDGSHIKGL+INFIHHNWP+LL+ FLEEFITPI+KA+K ++ELSFYS+PEF+
Sbjct: 537 MIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFD 596
Query: 614 EWKEETTN 621
EWK+ N
Sbjct: 597 EWKKHIEN 604
Score = 656 (236.0 bits), Expect = 1.3e-189, Sum P(7) = 1.3e-189
Identities = 130/205 (63%), Positives = 155/205 (75%)
Query: 158 EDKVTGV-VPTMIFGHLLTSSNYNDEEDK--VTGGRNGYGAKLCNIFSSKFVVETSCSEY 214
E KV V VP +IFG LLTSSNY+D+E K VTGGRNGYGAKLCNIFS+KF VET+C EY
Sbjct: 127 EHKVEKVYVPALIFGQLLTSSNYDDDEKKKKVTGGRNGYGAKLCNIFSTKFTVETACKEY 186
Query: 215 KKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDA 274
K SFKQ W +NM K + +IK +D+T ITF PDL+KFKM LD+D+V L+TRRAYD
Sbjct: 187 KHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDRDIVALMTRRAYDL 246
Query: 275 AASTKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDR 333
A S K VKV NG+KLPV F+ YV LY D+ DE G +K+I+E N RW+V + S++
Sbjct: 247 AGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEK 306
Query: 334 GFQQVSFVNSIATTKGGRHVDAVVD 358
GFQQ+SFVNSIATTKGGRHVD VVD
Sbjct: 307 GFQQISFVNSIATTKGGRHVDYVVD 331
Score = 520 (188.1 bits), Expect = 2.2e-175, Sum P(7) = 2.2e-175
Identities = 96/143 (67%), Positives = 119/143 (83%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
K + K+SVE++YQKK+QLEHILLRPDTYIGSVEP+T+ MW+ + + M RE+T+VP
Sbjct: 19 KNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVG-MNCREVTFVP 77
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GLYKIFDEILVNA DNKQRD M CIK++++ E+N IS+WNNGKGIPVVEHK EK++VP
Sbjct: 78 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPA 137
Query: 143 MIFGHLLTSSNYNDEEDK--VTG 163
+IFG LLTSSNY+D+E K VTG
Sbjct: 138 LIFGQLLTSSNYDDDEKKKKVTG 160
Score = 337 (123.7 bits), Expect = 1.3e-189, Sum P(7) = 1.3e-189
Identities = 60/97 (61%), Positives = 77/97 (79%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIV+N++RM+ G DP PM P YKN
Sbjct: 835 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKN 894
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
FKG I G +++ V+GEI ++D + +EITEL V W
Sbjct: 895 FKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTW 931
Score = 208 (78.3 bits), Expect = 1.3e-189, Sum P(7) = 1.3e-189
Identities = 37/45 (82%), Positives = 41/45 (91%)
Query: 410 GMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC 454
G+++KPFQVKNHIW+FINCLI NPTFDSQTKENMTLQ SFGS C
Sbjct: 348 GVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKC 392
Score = 174 (66.3 bits), Expect = 1.3e-189, Sum P(7) = 1.3e-189
Identities = 36/100 (36%), Positives = 63/100 (63%)
Query: 809 HDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERK 868
++++ K K Q + E + ++ + D++ S + PD ++Y+L M+ WSLT E+
Sbjct: 1082 YESDPVKAWKEA-QEKAAEEEESQNQHDDSSSDSGTPSGPD--FNYILNMSLWSLTKEKV 1138
Query: 869 NELLKKRDDKMTELNILKKKAPTDLWSDDLDA-LREKDKI 907
EL+K+RD K E++ LK+K+P+DLW +DL A + E DK+
Sbjct: 1139 EELIKQRDAKGREVSDLKRKSPSDLWKEDLAAFVEELDKV 1178
Score = 52 (23.4 bits), Expect = 1.3e-189, Sum P(7) = 1.3e-189
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 1084 LDDTMPSAAGRRVEPK 1099
L++TMPS GRRV P+
Sbjct: 1209 LEETMPSPYGRRVVPE 1224
Score = 49 (22.3 bits), Expect = 1.3e-189, Sum P(7) = 1.3e-189
Identities = 14/47 (29%), Positives = 18/47 (38%)
Query: 2214 TFFTNKGKPP-DQLNNPRPGPSNSTITPGPSNSTLPPGPSNSTLPPG 2259
T KGKP D + P+ P + S+S G T P G
Sbjct: 1468 TVAAKKGKPSLDTASKPKRAPKQKKVETVNSDSDSEFGVPKKTAPKG 1514
Score = 48 (22.0 bits), Expect = 7.9e-44, Sum P(4) = 7.9e-44
Identities = 15/75 (20%), Positives = 28/75 (37%)
Query: 214 YKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPD------LTKFKMTSLDKDMVDLI 267
Y+ + WK+ K E DD + + TP + + SL K+ V+ +
Sbjct: 1082 YESDPVKAWKEAQEKAAEEEESQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEEL 1141
Query: 268 TRRAYDAAASTKDVK 282
++ D+K
Sbjct: 1142 IKQRDAKGREVSDLK 1156
Score = 44 (20.5 bits), Expect = 4.4e-189, Sum P(7) = 4.4e-189
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 1486 TEESKSEAVNSEESKSEAANPIESKQTVKTKESKLETVN 1524
TE+ S+ V +++ K + K+ K K K+ETVN
Sbjct: 1461 TEKVPSKTVAAKKGKPSLDTASKPKRAPKQK--KVETVN 1497
Score = 42 (19.8 bits), Expect = 6.1e-175, Sum P(5) = 6.1e-175
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 810 DNELAKPQKTGPQLERQ--ERQAAEGEDDE 837
D+E P+KT P+ + + +++ A G ++E
Sbjct: 1501 DSEFGVPKKTAPKGKGRGAKKRKASGSENE 1530
Score = 41 (19.5 bits), Expect = 1.9e-188, Sum P(7) = 1.9e-188
Identities = 17/70 (24%), Positives = 31/70 (44%)
Query: 1123 WESNLRP---SADKAESRKRTQTSQGTESEERKGHLRRWRRKEEESTQTVQVELREGV-- 1177
W+ +L DK E+++R G + KG + + + K+ + +T+ V
Sbjct: 1164 WKEDLAAFVEELDKVEAQEREDVLAGMAGKAIKGKVGKPKVKKLQLEETMPSPYGRRVVP 1223
Query: 1178 NISAPKPQAS 1187
I+A K AS
Sbjct: 1224 EITAMKADAS 1233
Score = 40 (19.1 bits), Expect = 5.0e-56, Sum P(5) = 5.0e-56
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 309 DGDPVKIIYEN---VNPRWEVAIAP 330
D + +K +Y++ V P W + I P
Sbjct: 822 DDNLLKFLYDDNQRVEPEWYIPIIP 846
Score = 38 (18.4 bits), Expect = 1.1e-174, Sum P(6) = 1.1e-174
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 816 PQKTGPQLERQERQAAEGEDDEAGSQTQ-EEEDP 848
P +G ++ ++ DDE+ S++ EE +P
Sbjct: 1296 PTSSGKPSAKKVKKRNPWSDDESKSESDLEETEP 1329
Score = 38 (18.4 bits), Expect = 2.6e-144, Sum P(5) = 2.6e-144
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 2057 FQNNQEMETFLKQLAGEV 2074
F+ N + E + QLAG V
Sbjct: 734 FKRNDKREVKVAQLAGSV 751
Score = 38 (18.4 bits), Expect = 2.6e-144, Sum P(5) = 2.6e-144
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 2026 LYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
L+++ EDD +T +K + + F ++
Sbjct: 637 LFRYAGPEDDAAITLAFSKKKIDDRKEWLTNFMEDR 672
Score = 37 (18.1 bits), Expect = 1.1e-42, Sum P(4) = 1.1e-42
Identities = 9/52 (17%), Positives = 24/52 (46%)
Query: 261 KDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDP 312
KD++ ++ +R Y++ VK + ++ + ++ + D + G P
Sbjct: 1071 KDLIQMLVQRGYES----DPVKAWKEAQEKAAEE-EESQNQHDDSSSDSGTP 1117
Score = 37 (18.1 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIK 109
GL+K+F C++ M C+K
Sbjct: 984 GLHKVFKLQTTLTCNSMVLFDHMGCLK 1010
>UNIPROTKB|A8JD08 [details] [associations]
symbol:TOP2 "DNA topoisomerase 2" species:3055
"Chlamydomonas reinhardtii" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 KO:K03164 EMBL:DS496159
RefSeq:XP_001700298.1 ProteinModelPortal:A8JD08 STRING:A8JD08
EnsemblPlants:EDO98265 GeneID:5725848 KEGG:cre:CHLREDRAFT_38019
ProtClustDB:PLN03128 BioCyc:CHLAMY:CHLREDRAFT_38019-MONOMER
Uniprot:A8JD08
Length = 1167
Score = 826 (295.8 bits), Expect = 1.3e-178, Sum P(5) = 1.3e-178
Identities = 174/343 (50%), Positives = 228/343 (66%)
Query: 18 GPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERRE 77
GPS A S+E++YQKK+QLEHI+LRPDTYIGS E +W+ + ME ++
Sbjct: 5 GPSNAAAPAAGGKSIEEMYQKKTQLEHIILRPDTYIGSTERQPNHVWVHTGQK--MEYKQ 62
Query: 78 ITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEK 137
++Y PGLYKIFDEILVNA DNK RD M+ IK+ ++ TN+I VWNNGKGIPV HK+E
Sbjct: 63 VSYPPGLYKIFDEILVNAADNKVRDATMDTIKVDIDAATNSIRVWNNGKGIPVDVHKEEG 122
Query: 138 MFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKL 197
++VP +IFGHLLTSSNYND E K V H T+ Y ++TGGRNGYGAKL
Sbjct: 123 VYVPELIFGHLLTSSNYNDSEKKALTV-------H--TNIPYAPPP-QITGGRNGYGAKL 172
Query: 198 CNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITFTPDLTKFKM 256
NIFS++F++ET K +KQ + NM +P+I + D++T ITF PDL +F M
Sbjct: 173 ANIFSTEFIIETCDGSRLKRYKQTFTKNMQVKGTPKITDCKASDNWTSITFKPDLARFGM 232
Query: 257 TSLDKDMVDLITRRAYDAAAST-KDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKI 315
+LD+D+V L+ RR YD A K KV+ NGE+L +K+FQ+YV +Y ++G P
Sbjct: 233 EALDEDVVSLLRRRVYDMAGVLGKGAKVYYNGERLSIKSFQEYVDMYLG--PKNGVPR-- 288
Query: 316 IYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVD 358
E +N RWEV I+ +D FQQVSFVNSI+T KGG HVD +V+
Sbjct: 289 FCERINDRWEVCISITDGSFQQVSFVNSISTQKGGTHVDYIVN 331
Score = 563 (203.2 bits), Expect = 1.3e-178, Sum P(5) = 1.3e-178
Identities = 113/173 (65%), Positives = 136/173 (78%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+ KL+DANDAG S +CTLILTEGDSAK+LA+SGLGVVGRD YGVFPLRGKLLNVREA+
Sbjct: 437 ITKLDDANDAGGPRSRECTLILTEGDSAKALAISGLGVVGRDHYGVFPLRGKLLNVREAS 496
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
QI NAEI N+ +I+GLQ+ K Y E+ +LRYG LMIMTDQD DGSHIKGLI+NF+
Sbjct: 497 AAQIAANAEIQNIKQIMGLQHGKVY---ENTTSLRYGHLMIMTDQDHDGSHIKGLIMNFL 553
Query: 575 HHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEE----TTNW 622
H +P+LLR+P FL EFITPI+KA + R+ FY++PE+E WKE TT W
Sbjct: 554 HSFFPSLLRIPGFLLEFITPIVKARRGRDTKVFYTMPEYEAWKESLGNATTAW 606
Score = 279 (103.3 bits), Expect = 1.3e-178, Sum P(5) = 1.3e-178
Identities = 50/101 (49%), Positives = 68/101 (67%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEPEWY+PI+P VL+NGA+GIGTGW T IPN+NPR+I+ N++R++ GE M PWY+ F
Sbjct: 822 IEPEWYMPILPTVLINGADGIGTGWSTTIPNYNPRDIMANLRRLLEGEAQEAMHPWYRGF 881
Query: 720 KGEIDYC-----GDSRFVVNGEIAILDDDKLEITELQVGKW 755
G I G +VV+G + + +EITEL + KW
Sbjct: 882 NGNIAEAATHKSGSRSYVVSGTVTQTGPNTIEITELPIRKW 922
Score = 176 (67.0 bits), Expect = 1.3e-178, Sum P(5) = 1.3e-178
Identities = 33/62 (53%), Positives = 43/62 (69%)
Query: 412 ALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC---VPKLEDANDAGTKN 468
A+KP VKNH+W+F+NC + NP FDSQTKE +TL+ +FGS C VP L+ AG +
Sbjct: 350 AIKPAMVKNHLWVFLNCYVENPAFDSQTKETLTLRATAFGSKCELPVPLLDKVLKAGLSD 409
Query: 469 SI 470
SI
Sbjct: 410 SI 411
Score = 97 (39.2 bits), Expect = 1.3e-178, Sum P(5) = 1.3e-178
Identities = 25/84 (29%), Positives = 42/84 (50%)
Query: 818 KTGPQLERQERQAAE-GEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRD 876
K G +++ + + AE GE+ E G + YDYLL M+ ++LT E+ +L ++
Sbjct: 1083 KAGAKVKVRITEVAEDGEEGEGGEAAVTASN-GASYDYLLSMSIYNLTREKIAKLQEEAA 1141
Query: 877 DKMTELNILKKKAPTDLWSDDLDA 900
+ L D+W+ DLDA
Sbjct: 1142 KAKERVEYLCSITGRDMWAQDLDA 1165
Score = 42 (19.8 bits), Expect = 1.3e-92, Sum P(3) = 1.3e-92
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 1365 AYYIVPSAE--ELKALMML-HGGIYHHYESSRTTHII 1398
A I +AE +K +M L HG +Y + S R H++
Sbjct: 497 AAQIAANAEIQNIKQIMGLQHGKVYENTTSLRYGHLM 533
Score = 39 (18.8 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 307 DEDGDPVKIIY--ENVNPR--WEVAIAPS---DRGFQQVSFVNSI 344
DEDGD +++ + + V+ R W P D+ ++S+ + I
Sbjct: 641 DEDGDSIELAFSKKRVDDRKEWLSNFVPGTFLDQSADRISYSDFI 685
>ASPGD|ASPL0000029372 [details] [associations]
symbol:top2 species:162425 "Emericella nidulans"
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IEA] [GO:0006325 "chromatin organization"
evidence=IEA] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IEA]
[GO:0007076 "mitotic chromosome condensation" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR017956
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418 SMART:SM00384
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261 EMBL:BN001305
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:AACD01000094 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 OMA:ADNKQND OrthoDB:EOG4XPTPZ
RefSeq:XP_663010.1 ProteinModelPortal:Q5B224 SMR:Q5B224
STRING:Q5B224 EnsemblFungi:CADANIAT00003686 GeneID:2871696
KEGG:ani:AN5406.2 Uniprot:Q5B224
Length = 1709
Score = 517 (187.1 bits), Expect = 2.1e-173, Sum P(7) = 2.1e-173
Identities = 101/199 (50%), Positives = 135/199 (67%)
Query: 165 VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKD 224
+P +IFG+LLTSSNY+D ++K+TGGRNG+GAKLCN+FS++F VET S+ KK + Q W D
Sbjct: 224 IPQLIFGNLLTSSNYDDAKEKITGGRNGFGAKLCNVFSTEFTVETQDSKQKKRYLQTWTD 283
Query: 225 NMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVF 284
NM V P+I + DFT++TF D +F M +D D LI RR YD A +T V V
Sbjct: 284 NMQTVGKPKITAAKGSDFTRVTFKADFPRFGMDGIDDDFEALIKRRVYDLAGTT-GVTVK 342
Query: 285 LNGEKLPVKNFQDYVKLYT-----DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVS 339
LNG +LPV+NF+ Y+++YT +R D+D II + +P WE+ A SD F+QVS
Sbjct: 343 LNGTRLPVRNFKKYMEMYTKAIRRERGDDDSKSDPIITCSPHPYWEIGFAVSDGSFKQVS 402
Query: 340 FVNSIATTKGGRHVDAVVD 358
FVNSIATT GG HV+ + D
Sbjct: 403 FVNSIATTSGGTHVNYIAD 421
Score = 477 (173.0 bits), Expect = 2.1e-173, Sum P(7) = 2.1e-173
Identities = 96/169 (56%), Positives = 125/169 (73%)
Query: 456 PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATH 515
PKL DAN AGTK+ CTLILTEG+SAK LA++G VVG D +GV+PLRGK+LNVR+A+
Sbjct: 528 PKLTDANRAGTKDGYKCTLILTEGESAKGLAMAGRAVVGADLFGVYPLRGKMLNVRDASF 587
Query: 516 KQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIH 575
QI +N EI ++ +GLQ+ K+YT D K LRYG LMIMTDQD DGSHIKGL+INF+
Sbjct: 588 DQISKNEEIQSIKNFMGLQHKKEYT---DTKGLRYGHLMIMTDQDHDGSHIKGLLINFLE 644
Query: 576 HNWPTLLRLP-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEE 618
+P+LL++P FL EFITPI+K K ++ SF+++ E+ WKE+
Sbjct: 645 AQFPSLLKIPEFLIEFITPIVKVWKGDIKDPTKQHSFFTIQEYNAWKEK 693
Score = 438 (159.2 bits), Expect = 2.1e-173, Sum P(7) = 2.1e-173
Identities = 87/165 (52%), Positives = 118/165 (71%)
Query: 2 SSDESDFDP--DVQQNGNGPSPKKKTPANK-MSVEKIYQKKSQLEHILLRPDTYIGSVEP 58
++ +S F P DV+ N P A++ + YQK + EHI +RPD+YIGSVE
Sbjct: 86 ATKKSGFKPLADVE---NESIPIDDVDASEEVKASSKYQKLNLREHITIRPDSYIGSVER 142
Query: 59 ITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNT 118
T+ MW+ N E + ME RE++YVPGLYKIFDEI+VNA DNKQ D M+ I++T ++ETN
Sbjct: 143 TTQEMWVYNSEIDGMEFREVSYVPGLYKIFDEIVVNAADNKQNDDNMDEIRVTYSRETNE 202
Query: 119 ISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTG 163
ISVWNNGKGIPV H++ M++P +IFG+LLTSSNY+D ++K+TG
Sbjct: 203 ISVWNNGKGIPVEMHEEHGMYIPQLIFGNLLTSSNYDDAKEKITG 247
Score = 318 (117.0 bits), Expect = 2.1e-173, Sum P(7) = 2.1e-173
Identities = 53/96 (55%), Positives = 73/96 (76%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP Y+P++PM+L+NGA+GIGTGW T IPN+NP +IVDN+KRMIRGE+ PM+PW+K F
Sbjct: 916 IEPWVYVPVVPMILINGADGIGTGWSTSIPNYNPEDIVDNLKRMIRGEEIKPMQPWFKGF 975
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
KGE+ G ++ +G I + D +LE+TEL + W
Sbjct: 976 KGEVTQLGPDKYKFSGLIKQVSDKELEVTELPIRTW 1011
Score = 139 (54.0 bits), Expect = 2.1e-173, Sum P(7) = 2.1e-173
Identities = 39/108 (36%), Positives = 55/108 (50%)
Query: 811 NELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNE 870
N+ A K G + E+ +A+E ED EA TQ D +DYLLGM WSLT ER +
Sbjct: 1165 NKTADAAKAG-ETEKVI-EASEDEDTEAQDDTQ---DLAHAFDYLLGMAIWSLTQERVEK 1219
Query: 871 LLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCPGGNRTRG 918
L ++ +K E++ L K + D+W DLD + + R RG
Sbjct: 1220 LRRQIGEKEHEIDELIKLSSEDIWLRDLDEFINEWRFQLSETDRRRRG 1267
Score = 125 (49.1 bits), Expect = 2.1e-173, Sum P(7) = 2.1e-173
Identities = 24/52 (46%), Positives = 36/52 (69%)
Query: 410 GMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTCVPKLEDA 461
G LKP Q++N+ ++F+N IVNP F SQTKE +T ++ FGS P L+++
Sbjct: 439 GSILKPAQIRNYCFLFVNAKIVNPAFSSQTKEQLTTKQTQFGSK--PILDES 488
Score = 64 (27.6 bits), Expect = 9.0e-166, Sum P(6) = 9.0e-166
Identities = 21/63 (33%), Positives = 27/63 (42%)
Query: 886 KKKAPTDLWSDDLDALREKDKIHPCPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSS 945
KKK D DD+DA+ + I P G R A R T +PS R T + +
Sbjct: 1636 KKKTLMDDSEDDIDAMA--NDILDSPVGIRDEAPAPPRSTASRPSRRTTTKKSYVIEDDD 1693
Query: 946 GED 948
ED
Sbjct: 1694 SED 1696
Score = 55 (24.4 bits), Expect = 4.3e-91, Sum P(5) = 4.3e-91
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 1545 GEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFS 1604
G+ + ++ H T+ ++Y N +EKH G RG E K+ LG + E+ +E F
Sbjct: 670 GDIKDPTKQHSFFTI----QEY-NAWKEKH-GHERGWE--HKYYKGLGTSSTEEAQEYFR 721
Query: 1605 D 1605
D
Sbjct: 722 D 722
Score = 53 (23.7 bits), Expect = 5.8e-136, Sum P(7) = 5.8e-136
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 1261 QYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSD 1301
Q N +EKH G RG E K+ LG + E+ +E F D
Sbjct: 685 QEYNAWKEKH-GHERGWE--HKYYKGLGTSSTEEAQEYFRD 722
Score = 51 (23.0 bits), Expect = 1.4e-163, Sum P(7) = 1.4e-163
Identities = 31/115 (26%), Positives = 47/115 (40%)
Query: 1514 KTKESK-LETVNISAPKPQASSTKNASNEDFLGEFYN-------KSRLHHLSTMGSMFKQ 1565
K K SK + T N+ A + TK + E L EFY K + H L + ++
Sbjct: 1067 KFKLSKTIATTNLVAFNAEGQMTKYPNVEAILEEFYRLRLKFYGKRKQHQLDQLQIELEK 1126
Query: 1566 YVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLE-ETFS---DNPSPSEPEPVI 1616
N+ R + G + K K S+ + E + L + F+ D E E VI
Sbjct: 1127 LTNQARFVQM-IIDGDLVVSKKKKSVLVKELDSLGFKRFNKTADAAKAGETEKVI 1180
Score = 46 (21.3 bits), Expect = 2.1e-173, Sum P(7) = 2.1e-173
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 1487 EESKSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDF 1543
++S + V S+ K AAN E + + K PKP+ ++ + S+ DF
Sbjct: 1296 DDSDDDFVVSKSKKKAAANKTEPAGGIMSFLKK-------TPKPEPAANDSDSDSDF 1345
Score = 46 (21.3 bits), Expect = 1.5e-131, Sum P(8) = 1.5e-131
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 2 SSD-ESDFDPDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPD 50
SSD +D P ++ +PKK PA K +V+ + K+ E + PD
Sbjct: 17 SSDFMTDEAPKPKKAAKKAAPKK-APAKKAAVKPKKKAKADSEDEMSDPD 65
Score = 45 (20.9 bits), Expect = 3.0e-29, Sum P(6) = 3.0e-29
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 109 KITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVV 165
+I+ N+E +I N G+ +HK E + +GHL+ ++ + + + G++
Sbjct: 589 QISKNEEIQSIK---NFMGL---QHKKEYTDTKGLRYGHLMIMTDQDHDGSHIKGLL 639
Score = 44 (20.5 bits), Expect = 2.6e-172, Sum P(8) = 2.6e-172
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 1087 TMPSAAGRRVEPKY 1100
T P AGR+ PKY
Sbjct: 1452 TAPPRAGRKAAPKY 1465
Score = 44 (20.5 bits), Expect = 2.1e-82, Sum P(8) = 2.1e-82
Identities = 16/66 (24%), Positives = 34/66 (51%)
Query: 241 DFTKITFTPDLTKF----KMTSLDK----DMVDLITRRAYDAAASTKDVKVFLNGEKLPV 292
+F ++++ P L K + + D D +D I R Y + T ++ V+ NG+ +PV
Sbjct: 158 EFREVSYVPGLYKIFDEIVVNAADNKQNDDNMDEI-RVTY--SRETNEISVWNNGKGIPV 214
Query: 293 KNFQDY 298
+ +++
Sbjct: 215 EMHEEH 220
Score = 41 (19.5 bits), Expect = 4.9e-131, Sum P(8) = 4.9e-131
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 1 MSSDESDFDPDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRP 49
MS D+S +G+ + P K + +K KK+ + ++P
Sbjct: 1 MSDDDSLMGSVFSDDGSSDFMTDEAPKPKKAAKKAAPKKAPAKKAAVKP 49
Score = 40 (19.1 bits), Expect = 9.1e-173, Sum P(7) = 9.1e-173
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 1752 DDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPSPSPILDMSTSILD 1801
DD +S N TEP A I+ L +TP P P + S S D
Sbjct: 1300 DDFVVSKSKKKAAANKTEP-AGGIMSF----LKKTPKPEPAANDSDSDSD 1344
Score = 40 (19.1 bits), Expect = 3.2e-162, Sum P(7) = 3.2e-162
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 1178 NISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL-ISLQQ-DKQLPA 1235
N+ A + TK + E L EFY RL L G + ++QL I L++ Q
Sbjct: 1078 NLVAFNAEGQMTKYPNVEAILEEFY---RLR-LKFYGKRKQHQLDQLQIELEKLTNQARF 1133
Query: 1236 IQVI 1239
+Q+I
Sbjct: 1134 VQMI 1137
Score = 40 (19.1 bits), Expect = 6.1e-134, Sum P(8) = 6.1e-134
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 1186 ASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQLISLQQDK 1231
++S N + ED + R + M FK + ++ L DK
Sbjct: 941 STSIPNYNPEDIVDNLKRMIRGEEIKPMQPWFKGFKGEVTQLGPDK 986
Score = 40 (19.1 bits), Expect = 1.9e-35, Sum P(3) = 1.9e-35
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 304 DRQDEDGDPVKIIYENVNPRWEVAIAP 330
D DE+ P+K P+ + A AP
Sbjct: 1563 DLDDEEDKPIKPAKTKAAPKAKAAPAP 1589
Score = 39 (18.8 bits), Expect = 6.1e-134, Sum P(8) = 6.1e-134
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 1149 EERKGHLRRWRRKEEESTQTVQVE 1172
+E+ GH R W K + T E
Sbjct: 691 KEKHGHERGWEHKYYKGLGTSSTE 714
Score = 38 (18.4 bits), Expect = 2.6e-172, Sum P(8) = 2.6e-172
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 1491 SEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTK 1536
SE+++ ++ + + P ++K K K +AP P+A + K
Sbjct: 1559 SESIDLDDEEDKPIKPAKTKAAPKAK---------AAPAPKAGTGK 1595
Score = 37 (18.1 bits), Expect = 1.4e-171, Sum P(8) = 1.4e-171
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 1182 PKPQASSTKNASNEDF 1197
PKP+ ++ + S+ DF
Sbjct: 1330 PKPEPAANDSDSDSDF 1345
Score = 37 (18.1 bits), Expect = 8.8e-32, Sum P(4) = 8.8e-32
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 288 EKLPVKNFQDYVKLYTDRQDEDGD 311
E +P K+ + VK +DEDGD
Sbjct: 1351 EVMPKKS-RGPVKASPQLKDEDGD 1373
>UNIPROTKB|Q5B224 [details] [associations]
symbol:AN5406.2 "DNA topoisomerase 2" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR017956
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418 SMART:SM00384
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261 EMBL:BN001305
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:AACD01000094 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 OMA:ADNKQND OrthoDB:EOG4XPTPZ
RefSeq:XP_663010.1 ProteinModelPortal:Q5B224 SMR:Q5B224
STRING:Q5B224 EnsemblFungi:CADANIAT00003686 GeneID:2871696
KEGG:ani:AN5406.2 Uniprot:Q5B224
Length = 1709
Score = 517 (187.1 bits), Expect = 2.1e-173, Sum P(7) = 2.1e-173
Identities = 101/199 (50%), Positives = 135/199 (67%)
Query: 165 VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKD 224
+P +IFG+LLTSSNY+D ++K+TGGRNG+GAKLCN+FS++F VET S+ KK + Q W D
Sbjct: 224 IPQLIFGNLLTSSNYDDAKEKITGGRNGFGAKLCNVFSTEFTVETQDSKQKKRYLQTWTD 283
Query: 225 NMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVF 284
NM V P+I + DFT++TF D +F M +D D LI RR YD A +T V V
Sbjct: 284 NMQTVGKPKITAAKGSDFTRVTFKADFPRFGMDGIDDDFEALIKRRVYDLAGTT-GVTVK 342
Query: 285 LNGEKLPVKNFQDYVKLYT-----DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVS 339
LNG +LPV+NF+ Y+++YT +R D+D II + +P WE+ A SD F+QVS
Sbjct: 343 LNGTRLPVRNFKKYMEMYTKAIRRERGDDDSKSDPIITCSPHPYWEIGFAVSDGSFKQVS 402
Query: 340 FVNSIATTKGGRHVDAVVD 358
FVNSIATT GG HV+ + D
Sbjct: 403 FVNSIATTSGGTHVNYIAD 421
Score = 477 (173.0 bits), Expect = 2.1e-173, Sum P(7) = 2.1e-173
Identities = 96/169 (56%), Positives = 125/169 (73%)
Query: 456 PKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATH 515
PKL DAN AGTK+ CTLILTEG+SAK LA++G VVG D +GV+PLRGK+LNVR+A+
Sbjct: 528 PKLTDANRAGTKDGYKCTLILTEGESAKGLAMAGRAVVGADLFGVYPLRGKMLNVRDASF 587
Query: 516 KQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIH 575
QI +N EI ++ +GLQ+ K+YT D K LRYG LMIMTDQD DGSHIKGL+INF+
Sbjct: 588 DQISKNEEIQSIKNFMGLQHKKEYT---DTKGLRYGHLMIMTDQDHDGSHIKGLLINFLE 644
Query: 576 HNWPTLLRLP-FLEEFITPIIKATKA-----REELSFYSLPEFEEWKEE 618
+P+LL++P FL EFITPI+K K ++ SF+++ E+ WKE+
Sbjct: 645 AQFPSLLKIPEFLIEFITPIVKVWKGDIKDPTKQHSFFTIQEYNAWKEK 693
Score = 438 (159.2 bits), Expect = 2.1e-173, Sum P(7) = 2.1e-173
Identities = 87/165 (52%), Positives = 118/165 (71%)
Query: 2 SSDESDFDP--DVQQNGNGPSPKKKTPANK-MSVEKIYQKKSQLEHILLRPDTYIGSVEP 58
++ +S F P DV+ N P A++ + YQK + EHI +RPD+YIGSVE
Sbjct: 86 ATKKSGFKPLADVE---NESIPIDDVDASEEVKASSKYQKLNLREHITIRPDSYIGSVER 142
Query: 59 ITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNT 118
T+ MW+ N E + ME RE++YVPGLYKIFDEI+VNA DNKQ D M+ I++T ++ETN
Sbjct: 143 TTQEMWVYNSEIDGMEFREVSYVPGLYKIFDEIVVNAADNKQNDDNMDEIRVTYSRETNE 202
Query: 119 ISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTG 163
ISVWNNGKGIPV H++ M++P +IFG+LLTSSNY+D ++K+TG
Sbjct: 203 ISVWNNGKGIPVEMHEEHGMYIPQLIFGNLLTSSNYDDAKEKITG 247
Score = 318 (117.0 bits), Expect = 2.1e-173, Sum P(7) = 2.1e-173
Identities = 53/96 (55%), Positives = 73/96 (76%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP Y+P++PM+L+NGA+GIGTGW T IPN+NP +IVDN+KRMIRGE+ PM+PW+K F
Sbjct: 916 IEPWVYVPVVPMILINGADGIGTGWSTSIPNYNPEDIVDNLKRMIRGEEIKPMQPWFKGF 975
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
KGE+ G ++ +G I + D +LE+TEL + W
Sbjct: 976 KGEVTQLGPDKYKFSGLIKQVSDKELEVTELPIRTW 1011
Score = 139 (54.0 bits), Expect = 2.1e-173, Sum P(7) = 2.1e-173
Identities = 39/108 (36%), Positives = 55/108 (50%)
Query: 811 NELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNE 870
N+ A K G + E+ +A+E ED EA TQ D +DYLLGM WSLT ER +
Sbjct: 1165 NKTADAAKAG-ETEKVI-EASEDEDTEAQDDTQ---DLAHAFDYLLGMAIWSLTQERVEK 1219
Query: 871 LLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCPGGNRTRG 918
L ++ +K E++ L K + D+W DLD + + R RG
Sbjct: 1220 LRRQIGEKEHEIDELIKLSSEDIWLRDLDEFINEWRFQLSETDRRRRG 1267
Score = 125 (49.1 bits), Expect = 2.1e-173, Sum P(7) = 2.1e-173
Identities = 24/52 (46%), Positives = 36/52 (69%)
Query: 410 GMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTCVPKLEDA 461
G LKP Q++N+ ++F+N IVNP F SQTKE +T ++ FGS P L+++
Sbjct: 439 GSILKPAQIRNYCFLFVNAKIVNPAFSSQTKEQLTTKQTQFGSK--PILDES 488
Score = 64 (27.6 bits), Expect = 9.0e-166, Sum P(6) = 9.0e-166
Identities = 21/63 (33%), Positives = 27/63 (42%)
Query: 886 KKKAPTDLWSDDLDALREKDKIHPCPGGNRTRGLALKRQTRYQPSNRVLTSRDEPMVVSS 945
KKK D DD+DA+ + I P G R A R T +PS R T + +
Sbjct: 1636 KKKTLMDDSEDDIDAMA--NDILDSPVGIRDEAPAPPRSTASRPSRRTTTKKSYVIEDDD 1693
Query: 946 GED 948
ED
Sbjct: 1694 SED 1696
Score = 55 (24.4 bits), Expect = 4.3e-91, Sum P(5) = 4.3e-91
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 1545 GEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFS 1604
G+ + ++ H T+ ++Y N +EKH G RG E K+ LG + E+ +E F
Sbjct: 670 GDIKDPTKQHSFFTI----QEY-NAWKEKH-GHERGWE--HKYYKGLGTSSTEEAQEYFR 721
Query: 1605 D 1605
D
Sbjct: 722 D 722
Score = 53 (23.7 bits), Expect = 5.8e-136, Sum P(7) = 5.8e-136
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 1261 QYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSD 1301
Q N +EKH G RG E K+ LG + E+ +E F D
Sbjct: 685 QEYNAWKEKH-GHERGWE--HKYYKGLGTSSTEEAQEYFRD 722
Score = 51 (23.0 bits), Expect = 1.4e-163, Sum P(7) = 1.4e-163
Identities = 31/115 (26%), Positives = 47/115 (40%)
Query: 1514 KTKESK-LETVNISAPKPQASSTKNASNEDFLGEFYN-------KSRLHHLSTMGSMFKQ 1565
K K SK + T N+ A + TK + E L EFY K + H L + ++
Sbjct: 1067 KFKLSKTIATTNLVAFNAEGQMTKYPNVEAILEEFYRLRLKFYGKRKQHQLDQLQIELEK 1126
Query: 1566 YVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLE-ETFS---DNPSPSEPEPVI 1616
N+ R + G + K K S+ + E + L + F+ D E E VI
Sbjct: 1127 LTNQARFVQM-IIDGDLVVSKKKKSVLVKELDSLGFKRFNKTADAAKAGETEKVI 1180
Score = 46 (21.3 bits), Expect = 2.1e-173, Sum P(7) = 2.1e-173
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 1487 EESKSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDF 1543
++S + V S+ K AAN E + + K PKP+ ++ + S+ DF
Sbjct: 1296 DDSDDDFVVSKSKKKAAANKTEPAGGIMSFLKK-------TPKPEPAANDSDSDSDF 1345
Score = 46 (21.3 bits), Expect = 1.5e-131, Sum P(8) = 1.5e-131
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 2 SSD-ESDFDPDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPD 50
SSD +D P ++ +PKK PA K +V+ + K+ E + PD
Sbjct: 17 SSDFMTDEAPKPKKAAKKAAPKK-APAKKAAVKPKKKAKADSEDEMSDPD 65
Score = 45 (20.9 bits), Expect = 3.0e-29, Sum P(6) = 3.0e-29
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 109 KITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVV 165
+I+ N+E +I N G+ +HK E + +GHL+ ++ + + + G++
Sbjct: 589 QISKNEEIQSIK---NFMGL---QHKKEYTDTKGLRYGHLMIMTDQDHDGSHIKGLL 639
Score = 44 (20.5 bits), Expect = 2.6e-172, Sum P(8) = 2.6e-172
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 1087 TMPSAAGRRVEPKY 1100
T P AGR+ PKY
Sbjct: 1452 TAPPRAGRKAAPKY 1465
Score = 44 (20.5 bits), Expect = 2.1e-82, Sum P(8) = 2.1e-82
Identities = 16/66 (24%), Positives = 34/66 (51%)
Query: 241 DFTKITFTPDLTKF----KMTSLDK----DMVDLITRRAYDAAASTKDVKVFLNGEKLPV 292
+F ++++ P L K + + D D +D I R Y + T ++ V+ NG+ +PV
Sbjct: 158 EFREVSYVPGLYKIFDEIVVNAADNKQNDDNMDEI-RVTY--SRETNEISVWNNGKGIPV 214
Query: 293 KNFQDY 298
+ +++
Sbjct: 215 EMHEEH 220
Score = 41 (19.5 bits), Expect = 4.9e-131, Sum P(8) = 4.9e-131
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 1 MSSDESDFDPDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRP 49
MS D+S +G+ + P K + +K KK+ + ++P
Sbjct: 1 MSDDDSLMGSVFSDDGSSDFMTDEAPKPKKAAKKAAPKKAPAKKAAVKP 49
Score = 40 (19.1 bits), Expect = 9.1e-173, Sum P(7) = 9.1e-173
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 1752 DDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPSPSPILDMSTSILD 1801
DD +S N TEP A I+ L +TP P P + S S D
Sbjct: 1300 DDFVVSKSKKKAAANKTEP-AGGIMSF----LKKTPKPEPAANDSDSDSD 1344
Score = 40 (19.1 bits), Expect = 3.2e-162, Sum P(7) = 3.2e-162
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 1178 NISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL-ISLQQ-DKQLPA 1235
N+ A + TK + E L EFY RL L G + ++QL I L++ Q
Sbjct: 1078 NLVAFNAEGQMTKYPNVEAILEEFY---RLR-LKFYGKRKQHQLDQLQIELEKLTNQARF 1133
Query: 1236 IQVI 1239
+Q+I
Sbjct: 1134 VQMI 1137
Score = 40 (19.1 bits), Expect = 6.1e-134, Sum P(8) = 6.1e-134
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 1186 ASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQLISLQQDK 1231
++S N + ED + R + M FK + ++ L DK
Sbjct: 941 STSIPNYNPEDIVDNLKRMIRGEEIKPMQPWFKGFKGEVTQLGPDK 986
Score = 40 (19.1 bits), Expect = 1.9e-35, Sum P(3) = 1.9e-35
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 304 DRQDEDGDPVKIIYENVNPRWEVAIAP 330
D DE+ P+K P+ + A AP
Sbjct: 1563 DLDDEEDKPIKPAKTKAAPKAKAAPAP 1589
Score = 39 (18.8 bits), Expect = 6.1e-134, Sum P(8) = 6.1e-134
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 1149 EERKGHLRRWRRKEEESTQTVQVE 1172
+E+ GH R W K + T E
Sbjct: 691 KEKHGHERGWEHKYYKGLGTSSTE 714
Score = 38 (18.4 bits), Expect = 2.6e-172, Sum P(8) = 2.6e-172
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 1491 SEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTK 1536
SE+++ ++ + + P ++K K K +AP P+A + K
Sbjct: 1559 SESIDLDDEEDKPIKPAKTKAAPKAK---------AAPAPKAGTGK 1595
Score = 37 (18.1 bits), Expect = 1.4e-171, Sum P(8) = 1.4e-171
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 1182 PKPQASSTKNASNEDF 1197
PKP+ ++ + S+ DF
Sbjct: 1330 PKPEPAANDSDSDSDF 1345
Score = 37 (18.1 bits), Expect = 8.8e-32, Sum P(4) = 8.8e-32
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 288 EKLPVKNFQDYVKLYTDRQDEDGD 311
E +P K+ + VK +DEDGD
Sbjct: 1351 EVMPKKS-RGPVKASPQLKDEDGD 1373
>UNIPROTKB|Q0DYE1 [details] [associations]
symbol:Os02g0699700 "DNA topoisomerase 2" species:39947
"Oryza sativa Japonica Group" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
EMBL:AP008208 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:3.40.50.670 KO:K03164
RefSeq:NP_001047833.1 UniGene:Os.34202 ProteinModelPortal:Q0DYE1
STRING:Q0DYE1 PRIDE:Q0DYE1 GeneID:4330426 KEGG:osa:4330426
Gramene:Q0DYE1 Uniprot:Q0DYE1
Length = 956
Score = 607 (218.7 bits), Expect = 1.5e-170, Sum P(5) = 1.5e-170
Identities = 126/199 (63%), Positives = 157/199 (78%)
Query: 427 NCLIVNPTFDSQTKENMTLQK--GSFGS--TCVPKLEDANDAGTKNSIDCTLILTEGDSA 482
+ +++N ++ K + LQK GS S T +PKLEDAN AG K+S +CTLILTEGDSA
Sbjct: 405 SAIVLNLLSWAEFKLSKELQKTDGSKRSRLTGIPKLEDANGAGGKDSNNCTLILTEGDSA 464
Query: 483 KSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTV 542
K+LA++G+ VVGRD YGVFPLRGKLLNVREA+HKQI+ENAEI N+ +ILGLQ+ K+Y
Sbjct: 465 KALAMAGISVVGRDYYGVFPLRGKLLNVREASHKQIMENAEIQNIKQILGLQHGKQY--- 521
Query: 543 EDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAR 601
+ K LRYG LMIMTDQD DGSHIKGL+INFIH WP+L+++P FL EFITPIIKAT R
Sbjct: 522 DSTKGLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSLIKIPSFLVEFITPIIKATNKR 581
Query: 602 EE---LSFYSLPEFEEWKE 617
++ L FYS+PE+E+WKE
Sbjct: 582 DKKIVLPFYSMPEYEQWKE 600
Score = 513 (185.6 bits), Expect = 1.5e-170, Sum P(5) = 1.5e-170
Identities = 108/202 (53%), Positives = 139/202 (68%)
Query: 163 GV-VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQV 221
GV VP MIFGHLLTSSNY+D K TGGRNGYGAKL NIFS++FV+ET+ +K +KQV
Sbjct: 131 GVYVPEMIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFVIETADGRRQKKYKQV 190
Query: 222 WKDNMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAST-K 279
+ +NM K + P+I K +++T++TF PDL KF MT L+ D+V L+ +R D A + K
Sbjct: 191 FSENMGKKSEPQITKCKQGENWTRVTFKPDLAKFNMTHLENDVVALMRKRVVDMAGTLGK 250
Query: 280 DVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVK---IIYENVNPRWEVAIAPSDRGFQ 336
VKV L+ +K+PV +F DYVKLY +D D V I + VN RWEV ++ S+ FQ
Sbjct: 251 TVKVELDHQKVPVHSFSDYVKLYIKSASKDRDDVNELPSISQKVNDRWEVCVSLSEGQFQ 310
Query: 337 QVSFVNSIATTKGGRHVDAVVD 358
QVSFVN IAT KGG HVD V +
Sbjct: 311 QVSFVNRIATIKGGTHVDYVTN 332
Score = 434 (157.8 bits), Expect = 1.5e-170, Sum P(5) = 1.5e-170
Identities = 82/133 (61%), Positives = 103/133 (77%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
++E++YQKK+QLEHILLRPDTYIGSVE T +W+ E M R +TYVPGLYKIFDE
Sbjct: 27 TIEEMYQKKTQLEHILLRPDTYIGSVEKHTAQLWVY--EDGAMVSRSVTYVPGLYKIFDE 84
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNKQRDP M+ +++ ++ + ISV+NNG GIPV H++E ++VP MIFGHLLT
Sbjct: 85 ILVNAADNKQRDPSMDSLRVEIDADEGRISVYNNGDGIPVEIHQEEGVYVPEMIFGHLLT 144
Query: 151 SSNYNDEEDKVTG 163
SSNY+D K TG
Sbjct: 145 SSNYDDNVKKTTG 157
Score = 299 (110.3 bits), Expect = 1.5e-170, Sum P(5) = 1.5e-170
Identities = 54/100 (54%), Positives = 69/100 (69%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
IEP WY+PI+PMVLVNG+EGIGTGW T IPN+NPR+IV N++R++ E PM PWY+ F
Sbjct: 825 IEPTWYVPILPMVLVNGSEGIGTGWSTFIPNYNPRDIVANLRRLLNDEPVEPMDPWYRGF 884
Query: 720 KGEIDYCGDSR----FVVNGEIAILDDDKLEITELQVGKW 755
KG I G + V G I ++DD L ITEL + +W
Sbjct: 885 KGSIQKTGTKAGGVSYTVTGIIEVVDDTTLRITELPIRRW 924
Score = 144 (55.7 bits), Expect = 2.2e-120, Sum P(5) = 2.2e-120
Identities = 24/42 (57%), Positives = 32/42 (76%)
Query: 413 LKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC 454
+K VK+H+W+F+N LI NP FDSQTKE +T ++ SFGS C
Sbjct: 351 MKAHNVKSHLWVFVNALIDNPAFDSQTKETLTTRQASFGSKC 392
Score = 40 (19.1 bits), Expect = 6.2e-144, Sum P(4) = 6.2e-144
Identities = 15/71 (21%), Positives = 34/71 (47%)
Query: 2026 LYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQL--AGEVEKRLEEVKM 2083
++K+ + ++D EL F +K ++ + FQ+ ++T K + + + K L + M
Sbjct: 640 VWKNDQDDNDIELAFS--KKRITDRKEWLTNFQSGTHLDTEGKYIKYSDFINKELIQFSM 697
Query: 2084 KGKCITLKLMV 2094
++ MV
Sbjct: 698 ADLLRSIPSMV 708
Score = 38 (18.4 bits), Expect = 1.5e-170, Sum P(5) = 1.5e-170
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 1873 WAEAYQEMLSCVQSAMKHKPSSESK 1897
W++ Y+E L + K K + K
Sbjct: 924 WSQDYKEFLISIGGTDKSKDKDKDK 948
Score = 37 (18.1 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 2041 EHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEV 2081
++ +K+ YG + N E ++ G +K+ ++V
Sbjct: 150 DNVKKTTGGRNGYGAKLTNIFSTEFVIETADGRRQKKYKQV 190
>UNIPROTKB|Q7RJ69 [details] [associations]
symbol:PY03394 "DNA topoisomerase 2" species:73239
"Plasmodium yoelii yoelii" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 KO:K03164 EMBL:AABL01000973
RefSeq:XP_731396.1 HSSP:P06786 ProteinModelPortal:Q7RJ69
STRING:Q7RJ69 GeneID:3830618 KEGG:pyo:PY03394
EuPathDB:PlasmoDB:PY03394 Uniprot:Q7RJ69
Length = 1489
Score = 628 (226.1 bits), Expect = 2.5e-162, Sum P(6) = 2.5e-162
Identities = 150/351 (42%), Positives = 206/351 (58%)
Query: 287 GEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRG-FQQVSFVNSIA 345
G+ P K ++ + + + VKI +E + RWE+ I+ +D FQQVSFVNSI
Sbjct: 302 GDITPTKTTEENGNSNFNNNKYEEEIVKI-HEKQH-RWEIVISKTDGSQFQQVSFVNSIC 359
Query: 346 TTKGGRHVDAVVDAXXXXXXXXXXXXXXDLGCTI--------IMLFGXXXXXXXXXXLQM 397
TTKGG HV +VD G I + +F Q
Sbjct: 360 TTKGGTHVSYIVDQLLNSLSKKANAKNKG-GMEIKAGHIRNHLWVFVNCLIVNPTFDSQT 418
Query: 398 AKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKG-SFGSTC-- 454
+TL + G + N++ + ++ N +Q K + L+K GS+
Sbjct: 419 KETLTTKQAKFGSKCTLTDKTINNV--LKSSILSNILLWAQAKAQVELRKKMKAGSSKAR 476
Query: 455 -----VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLN 509
+PKLEDANDAG+K S +CTLILTEGDSAK+ ++GL +VGRD+YGVFPL+GKLLN
Sbjct: 477 ERIIGIPKLEDANDAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDRYGVFPLKGKLLN 536
Query: 510 VREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGL 569
VR+A+ KQ+++N EI N+ KI+GL + K +D+K LRYG LMIMTDQD DGSHIKGL
Sbjct: 537 VRDASFKQLMDNKEIQNIFKIMGLDITDK--NKQDIKGLRYGSLMIMTDQDYDGSHIKGL 594
Query: 570 IINFIHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWKEET 619
+IN IH WP+LL+ FL EF+TPI+K K +ELSF+++ E+E+WKE T
Sbjct: 595 LINMIHKFWPSLLKHKGFLCEFVTPIVKVQKGNQELSFFTIAEYEQWKENT 645
Score = 433 (157.5 bits), Expect = 2.5e-162, Sum P(6) = 2.5e-162
Identities = 84/141 (59%), Positives = 109/141 (77%)
Query: 28 NKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKI 87
NK ++E+ YQKKSQ+EHILLRPDTYIGSVE T+ +W+ N+E + M ++ ITYVPGLYKI
Sbjct: 4 NK-TIEERYQKKSQIEHILLRPDTYIGSVEMHTQLLWIWNKEKSRMVQKNITYVPGLYKI 62
Query: 88 FDEILVNACDNKQRDPK-----MNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
FDEI+VNA D K R+ + M CIKI +N+E ISV+N+G+GIPV HK+ ++VP
Sbjct: 63 FDEIIVNAADVKAREKEKSENPMTCIKIEINREQKKISVYNDGEGIPVDIHKEMNIYVPH 122
Query: 143 MIFGHLLTSSNYNDEEDKVTG 163
MIFG LLTS NY+D ED++TG
Sbjct: 123 MIFGELLTSDNYDDAEDRITG 143
Score = 399 (145.5 bits), Expect = 2.5e-162, Sum P(6) = 2.5e-162
Identities = 79/149 (53%), Positives = 102/149 (68%)
Query: 165 VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKD 224
VP MIFG LLTS NY+D ED++TGGRNG+GAKL NIFS +F V+ S KK FK W
Sbjct: 120 VPHMIFGELLTSDNYDDAEDRITGGRNGFGAKLTNIFSKEFTVQCGDSSRKKEFKMTWFQ 179
Query: 225 NMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVF 284
NMSK + P IK+ + D+ K+TF PDL KF M+ LD D+ L+ +R YD A T +V+V+
Sbjct: 180 NMSKFSDPHIKNYNGKDYVKVTFKPDLDKFGMSELDDDIECLLHKRVYDLAG-TCNVRVY 238
Query: 285 LNGEKLPVKNFQDYVKLYT-DRQDEDGDP 312
LNG +LPVK+F+ YV LY D + +P
Sbjct: 239 LNGTRLPVKDFKSYVDLYLRDNNTPNTNP 267
Score = 279 (103.3 bits), Expect = 2.5e-162, Sum P(6) = 2.5e-162
Identities = 51/97 (52%), Positives = 72/97 (74%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+IEP++YIP+IP +LVNG EGIGTG+ + IPN+N ++I++NIK+ I E +PM PWYK+
Sbjct: 865 KIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIINNIKKYIDKEPLVPMVPWYKD 924
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
FKG I+ G S + G I +DD+ LEITEL + +W
Sbjct: 925 FKGRIEPNGKSGYETIGIINKIDDETLEITELPIKRW 961
Score = 114 (45.2 bits), Expect = 2.5e-162, Sum P(6) = 2.5e-162
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 850 KDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
KDY+YLL M +SLT+E+ ELL + +K EL ILK +W D++ + E
Sbjct: 1148 KDYNYLLNMPIFSLTLEKVEELLSQLKEKEQELEILKSITVETMWLKDIEKVEE 1201
Score = 42 (19.8 bits), Expect = 8.5e-155, Sum P(6) = 8.5e-155
Identities = 17/65 (26%), Positives = 28/65 (43%)
Query: 1484 DNTE-ESKSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNED 1542
DN+ E + + K + A ++ K K S L T N++ P+ + AS D
Sbjct: 986 DNSSHEDVCFTIKMDPIKLKRAEEEGLEKVFKLK-STLTTTNMTLFDPKLKLQRYASELD 1044
Query: 1543 FLGEF 1547
L +F
Sbjct: 1045 ILKDF 1049
Score = 40 (19.1 bits), Expect = 3.6e-70, Sum P(3) = 3.6e-70
Identities = 13/59 (22%), Positives = 28/59 (47%)
Query: 1926 ASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDL 1984
A ++R + C ++ + L TK+AK + LT + I++ + + LS++
Sbjct: 394 AGHIRNHLWVFVNCLIVNPTFDSQTKETLTTKQAKFGSKCTLTDKTINNVLKSSILSNI 452
Score = 39 (18.8 bits), Expect = 2.5e-162, Sum P(6) = 2.5e-162
Identities = 35/167 (20%), Positives = 72/167 (43%)
Query: 1652 KVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKE 1711
KV E ++ Q ++ + N+ + ++ G G KK K + D E +
Sbjct: 1198 KVEEAIEFQRNVELANREESNKFKVARKKIGAG--------FKKKKKKKKLTSDDESEGD 1249
Query: 1712 VSYCLYNLIASLTLNIEAVSLYT-NESFLNALPEDIRQE----VLDDLSRQQSVLSREQN 1766
S +I SL NI+ S T N+ N++ + IR+ +DD + Q +L N
Sbjct: 1250 TSDSSEFMINSL--NIKKNSKKTPNKKNNNSVRKKIRKIDSGISVDDNNTQTPILI---N 1304
Query: 1767 TTEPLAQDIICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVS 1813
+ E +I + + +P+++ I++T+ H +++ ++
Sbjct: 1305 SNEIDDSNISYSKTGDNAYNSDDTPLIN---KIINTSNIHDVNTPIA 1348
Score = 39 (18.8 bits), Expect = 3.2e-130, Sum P(5) = 3.2e-130
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 1586 KWKTSLGITEDEDLEETFSD 1605
K+ LG + D++ ++ FSD
Sbjct: 653 KYYKGLGTSTDKEFKQYFSD 672
Score = 39 (18.8 bits), Expect = 9.9e-130, Sum P(6) = 9.9e-130
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 1282 KWKTSLGITEDEDLEETFSD 1301
K+ LG + D++ ++ FSD
Sbjct: 653 KYYKGLGTSTDKEFKQYFSD 672
>WB|WBGene00019884 [details] [associations]
symbol:R05D3.12 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000003 "reproduction" evidence=IMP] [GO:0007276 "gamete
generation" evidence=IMP] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 EMBL:FO081667 GO:GO:0007276
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880
HOGENOM:HOG000216693 GeneTree:ENSGT00390000016222
RefSeq:NP_001129839.2 RefSeq:NP_001254958.1 RefSeq:NP_741252.2
ProteinModelPortal:P34534 SMR:P34534 PaxDb:P34534
EnsemblMetazoa:R05D3.12a GeneID:259522 KEGG:cel:CELE_R05D3.12
UCSC:R05D3.1 CTD:259522 WormBase:R05D3.12a WormBase:R05D3.12b
WormBase:R05D3.12c InParanoid:P34534 OMA:KLEDAEW NextBio:891486
Uniprot:P34534
Length = 1170
Score = 459 (166.6 bits), Expect = 2.2e-141, Sum P(6) = 2.2e-141
Identities = 95/206 (46%), Positives = 130/206 (63%)
Query: 165 VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKD 224
VPT++FG+L TSSNY+D E K GGRNGYGAKLCNIFS +F+VET + K+ F+Q W D
Sbjct: 152 VPTLVFGNLFTSSNYDDSEIKTVGGRNGYGAKLCNIFSKEFIVETVDTRIKRRFRQKWYD 211
Query: 225 NMSKVTSPE---IKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAST-KD 280
NM K E I + D+TK+ F PDL +F++ L D++DLI RR ++ AA+ +D
Sbjct: 212 NMKKCNEAEVVEILDETVKDYTKVEFVPDLERFQIDKLSDDVIDLIGRRVFEVAATLPRD 271
Query: 281 VKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQ--- 337
V V+LNG+K V F+DYVK++ D +++ + PRW V +A + F +
Sbjct: 272 VDVYLNGQKCDVDGFEDYVKMFNDSSS-------LLFLHPTPRWHVGVAKRNNFFGESHV 324
Query: 338 -----VSFVNSIATTKGGRHVDAVVD 358
VSFVN+I T KGG HVD V+D
Sbjct: 325 VLPKIVSFVNNINTEKGGSHVDYVMD 350
Score = 437 (158.9 bits), Expect = 2.2e-141, Sum P(6) = 2.2e-141
Identities = 88/172 (51%), Positives = 122/172 (70%)
Query: 455 VPKLEDANDAGTKNSID-CTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREA 513
+ KLEDA AG + + CTLILTEGDSAK+LA++GL V+GR+ YGVFPL+GKLLNV
Sbjct: 457 IVKLEDAEWAGITGTAEKCTLILTEGDSAKALALAGLEVLGRETYGVFPLKGKLLNVSNL 516
Query: 514 THKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINF 573
+ +N EI+NL++ILGL++ + + +LRYGRL+I+ DQD+DGSHIKGLI+NF
Sbjct: 517 DDARASKNEEISNLLRILGLKFEDSNSITRE--SLRYGRLLILADQDEDGSHIKGLIVNF 574
Query: 574 IHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWK--EETTNW 622
IH WP+L+ F++ F TP++KA K + SF+S+ E+ +W EE W
Sbjct: 575 IHKFWPSLVHTDGFIQSFRTPLLKAKKGDKVRSFFSMNEYRKWADVEEGGKW 626
Score = 378 (138.1 bits), Expect = 2.2e-141, Sum P(6) = 2.2e-141
Identities = 72/129 (55%), Positives = 92/129 (71%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETM-WLMNRETNHMERREITYVPGLYKIFDEILVN 94
Y+KKS EH+LLRPDTYIG V + + WL + E M +E+TY PGL KIFDEILVN
Sbjct: 47 YEKKSPTEHVLLRPDTYIGGVAMREDQIIWLRDSENRKMIAKEVTYPPGLLKIFDEILVN 106
Query: 95 ACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
A DNK RD MN +++ +++ET ISVWNNG G+PV H E ++VPT++FG+L TSSNY
Sbjct: 107 AADNKARDSSMNRLEVWLDRETARISVWNNGSGLPVEIHPTEGIYVPTLVFGNLFTSSNY 166
Query: 155 NDEEDKVTG 163
+D E K G
Sbjct: 167 DDSEIKTVG 175
Score = 222 (83.2 bits), Expect = 2.2e-141, Sum P(6) = 2.2e-141
Identities = 40/104 (38%), Positives = 66/104 (63%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRG-EDPLPMKPWYKN 718
+EP W PI+P++L+NG EGIGTGW TKI N NP +I+D I+R I + P+Y+
Sbjct: 844 VEPTWLCPIVPLILINGTEGIGTGWSTKIANRNPIDIIDMIRRKIDSISTEYEIPPFYEE 903
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDK-------LEITELQVGKW 755
F+G+++ ++F+ +G+I ++ ++ +EI EL +G W
Sbjct: 904 FRGKLEVVTPTKFISSGKIQLIRPERKNASTFSIEIVELPIGIW 947
Score = 128 (50.1 bits), Expect = 2.2e-141, Sum P(6) = 2.2e-141
Identities = 25/58 (43%), Positives = 40/58 (68%)
Query: 395 LQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS 452
+ + K ++D + ++KP +KN++ IFINCLI NP+F+SQTKE +T + +FGS
Sbjct: 353 VNIIKPIVDSKLGDPTKSVKPAVIKNNLSIFINCLIENPSFESQTKETLTTKAKNFGS 410
Score = 68 (29.0 bits), Expect = 2.2e-141, Sum P(6) = 2.2e-141
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
+Y YLL M LT + L +++ + TEL + +W +LD L E
Sbjct: 1110 NYGYLLEMPVSRLTSDEMKRLEERKSRRRTELEAAESADWKSVWRSELDKLAE 1162
Score = 52 (23.4 bits), Expect = 3.0e-90, Sum P(5) = 3.0e-90
Identities = 30/112 (26%), Positives = 51/112 (45%)
Query: 196 KLCNIFSSKFVVETSCSEYKKSFKQ-VWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKF 254
K+ NI K +V++ + KS K V K+N+S + I++ S + TK T T F
Sbjct: 351 KIVNII--KPIVDSKLGDPTKSVKPAVIKNNLSIFINCLIENPSFESQTKETLTTKAKNF 408
Query: 255 -KMTSLD-KDMVDLITRRAY--DAAASTKDVKVF-LNGEKLPVKNFQDYVKL 301
+ D K + + D ++K L G+++ V + +D VKL
Sbjct: 409 GSIFECDAKKTAEWAEQSGLIEDIVEEVLNMKKKKLPGKRVSVSSVRDIVKL 460
Score = 48 (22.0 bits), Expect = 1.7e-49, Sum P(5) = 1.7e-49
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 306 QDEDGDPVK-IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHV 353
QDEDG +K +I ++ W ++ +D GF Q SF + K G V
Sbjct: 560 QDEDGSHIKGLIVNFIHKFWP-SLVHTD-GFIQ-SFRTPLLKAKKGDKV 605
>UNIPROTKB|P34534 [details] [associations]
symbol:R05D3.12 "Putative DNA topoisomerase 2,
mitochondrial" species:6239 "Caenorhabditis elegans" [GO:0009295
"nucleoid" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0000819 "sister chromatid segregation" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:FO081667 GO:GO:0007276 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 HOGENOM:HOG000216693
GeneTree:ENSGT00390000016222 RefSeq:NP_001129839.2
RefSeq:NP_001254958.1 RefSeq:NP_741252.2 ProteinModelPortal:P34534
SMR:P34534 PaxDb:P34534 EnsemblMetazoa:R05D3.12a GeneID:259522
KEGG:cel:CELE_R05D3.12 UCSC:R05D3.1 CTD:259522 WormBase:R05D3.12a
WormBase:R05D3.12b WormBase:R05D3.12c InParanoid:P34534 OMA:KLEDAEW
NextBio:891486 Uniprot:P34534
Length = 1170
Score = 459 (166.6 bits), Expect = 2.2e-141, Sum P(6) = 2.2e-141
Identities = 95/206 (46%), Positives = 130/206 (63%)
Query: 165 VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKD 224
VPT++FG+L TSSNY+D E K GGRNGYGAKLCNIFS +F+VET + K+ F+Q W D
Sbjct: 152 VPTLVFGNLFTSSNYDDSEIKTVGGRNGYGAKLCNIFSKEFIVETVDTRIKRRFRQKWYD 211
Query: 225 NMSKVTSPE---IKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAST-KD 280
NM K E I + D+TK+ F PDL +F++ L D++DLI RR ++ AA+ +D
Sbjct: 212 NMKKCNEAEVVEILDETVKDYTKVEFVPDLERFQIDKLSDDVIDLIGRRVFEVAATLPRD 271
Query: 281 VKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQ--- 337
V V+LNG+K V F+DYVK++ D +++ + PRW V +A + F +
Sbjct: 272 VDVYLNGQKCDVDGFEDYVKMFNDSSS-------LLFLHPTPRWHVGVAKRNNFFGESHV 324
Query: 338 -----VSFVNSIATTKGGRHVDAVVD 358
VSFVN+I T KGG HVD V+D
Sbjct: 325 VLPKIVSFVNNINTEKGGSHVDYVMD 350
Score = 437 (158.9 bits), Expect = 2.2e-141, Sum P(6) = 2.2e-141
Identities = 88/172 (51%), Positives = 122/172 (70%)
Query: 455 VPKLEDANDAGTKNSID-CTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREA 513
+ KLEDA AG + + CTLILTEGDSAK+LA++GL V+GR+ YGVFPL+GKLLNV
Sbjct: 457 IVKLEDAEWAGITGTAEKCTLILTEGDSAKALALAGLEVLGRETYGVFPLKGKLLNVSNL 516
Query: 514 THKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINF 573
+ +N EI+NL++ILGL++ + + +LRYGRL+I+ DQD+DGSHIKGLI+NF
Sbjct: 517 DDARASKNEEISNLLRILGLKFEDSNSITRE--SLRYGRLLILADQDEDGSHIKGLIVNF 574
Query: 574 IHHNWPTLLRLP-FLEEFITPIIKATKAREELSFYSLPEFEEWK--EETTNW 622
IH WP+L+ F++ F TP++KA K + SF+S+ E+ +W EE W
Sbjct: 575 IHKFWPSLVHTDGFIQSFRTPLLKAKKGDKVRSFFSMNEYRKWADVEEGGKW 626
Score = 378 (138.1 bits), Expect = 2.2e-141, Sum P(6) = 2.2e-141
Identities = 72/129 (55%), Positives = 92/129 (71%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETM-WLMNRETNHMERREITYVPGLYKIFDEILVN 94
Y+KKS EH+LLRPDTYIG V + + WL + E M +E+TY PGL KIFDEILVN
Sbjct: 47 YEKKSPTEHVLLRPDTYIGGVAMREDQIIWLRDSENRKMIAKEVTYPPGLLKIFDEILVN 106
Query: 95 ACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNY 154
A DNK RD MN +++ +++ET ISVWNNG G+PV H E ++VPT++FG+L TSSNY
Sbjct: 107 AADNKARDSSMNRLEVWLDRETARISVWNNGSGLPVEIHPTEGIYVPTLVFGNLFTSSNY 166
Query: 155 NDEEDKVTG 163
+D E K G
Sbjct: 167 DDSEIKTVG 175
Score = 222 (83.2 bits), Expect = 2.2e-141, Sum P(6) = 2.2e-141
Identities = 40/104 (38%), Positives = 66/104 (63%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRG-EDPLPMKPWYKN 718
+EP W PI+P++L+NG EGIGTGW TKI N NP +I+D I+R I + P+Y+
Sbjct: 844 VEPTWLCPIVPLILINGTEGIGTGWSTKIANRNPIDIIDMIRRKIDSISTEYEIPPFYEE 903
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDK-------LEITELQVGKW 755
F+G+++ ++F+ +G+I ++ ++ +EI EL +G W
Sbjct: 904 FRGKLEVVTPTKFISSGKIQLIRPERKNASTFSIEIVELPIGIW 947
Score = 128 (50.1 bits), Expect = 2.2e-141, Sum P(6) = 2.2e-141
Identities = 25/58 (43%), Positives = 40/58 (68%)
Query: 395 LQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGS 452
+ + K ++D + ++KP +KN++ IFINCLI NP+F+SQTKE +T + +FGS
Sbjct: 353 VNIIKPIVDSKLGDPTKSVKPAVIKNNLSIFINCLIENPSFESQTKETLTTKAKNFGS 410
Score = 68 (29.0 bits), Expect = 2.2e-141, Sum P(6) = 2.2e-141
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 851 DYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
+Y YLL M LT + L +++ + TEL + +W +LD L E
Sbjct: 1110 NYGYLLEMPVSRLTSDEMKRLEERKSRRRTELEAAESADWKSVWRSELDKLAE 1162
Score = 52 (23.4 bits), Expect = 3.0e-90, Sum P(5) = 3.0e-90
Identities = 30/112 (26%), Positives = 51/112 (45%)
Query: 196 KLCNIFSSKFVVETSCSEYKKSFKQ-VWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKF 254
K+ NI K +V++ + KS K V K+N+S + I++ S + TK T T F
Sbjct: 351 KIVNII--KPIVDSKLGDPTKSVKPAVIKNNLSIFINCLIENPSFESQTKETLTTKAKNF 408
Query: 255 -KMTSLD-KDMVDLITRRAY--DAAASTKDVKVF-LNGEKLPVKNFQDYVKL 301
+ D K + + D ++K L G+++ V + +D VKL
Sbjct: 409 GSIFECDAKKTAEWAEQSGLIEDIVEEVLNMKKKKLPGKRVSVSSVRDIVKL 460
Score = 48 (22.0 bits), Expect = 1.7e-49, Sum P(5) = 1.7e-49
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 306 QDEDGDPVK-IIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHV 353
QDEDG +K +I ++ W ++ +D GF Q SF + K G V
Sbjct: 560 QDEDGSHIKGLIVNFIHKFWP-SLVHTD-GFIQ-SFRTPLLKAKKGDKV 605
>SGD|S000005032 [details] [associations]
symbol:TOP2 "Topoisomerase II, relieves torsional strain in
DNA by cleaving and re" species:4932 "Saccharomyces cerevisiae"
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IMP]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA;IDA]
[GO:0006333 "chromatin assembly or disassembly" evidence=IMP]
[GO:0006265 "DNA topological change" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0000795 "synaptonemal complex"
evidence=IDA] [GO:0000019 "regulation of mitotic recombination"
evidence=IMP] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006259
"DNA metabolic process" evidence=IEA] [GO:0031055 "chromatin
remodeling at centromere" evidence=IMP] [GO:0097046 "replication
fork progression beyond termination site" evidence=IMP] [GO:0097047
"DNA replication termination region" evidence=IPI]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
SGD:S000005032 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739
GO:GO:0005524 EMBL:BK006947 GO:GO:0006333 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0009330 GO:GO:0070683
GO:GO:0006271 GO:GO:0000712 EMBL:X89016 GO:GO:0000795 EMBL:AF458969
EMBL:AF458971 EMBL:AF458972 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 GO:GO:0031055
GO:GO:0000019 KO:K02952 GO:GO:0097046 RefSeq:NP_014311.3
GeneID:855636 KEGG:sce:YNL088W KO:K03164 RefSeq:NP_014318.3
GeneID:855643 KEGG:sce:YNL081C HOGENOM:HOG000216693
GeneTree:ENSGT00390000016222 OMA:AKEYFQD OrthoDB:EOG4XPTPZ
EMBL:M13814 EMBL:Z71364 PIR:S57534 PDB:1BGW PDB:1BJT PDB:1PVG
PDB:1QZR PDB:2RGR PDB:3L4J PDB:3L4K PDB:4GFH PDBsum:1BGW
PDBsum:1BJT PDBsum:1PVG PDBsum:1QZR PDBsum:2RGR PDBsum:3L4J
PDBsum:3L4K PDBsum:4GFH DisProt:DP00076 ProteinModelPortal:P06786
SMR:P06786 DIP:DIP-2300N IntAct:P06786 MINT:MINT-495862
STRING:P06786 PaxDb:P06786 PeptideAtlas:P06786 EnsemblFungi:YNL088W
CYGD:YNL088w ChEMBL:CHEMBL5290 EvolutionaryTrace:P06786
NextBio:979854 ArrayExpress:P06786 Genevestigator:P06786
GermOnline:YNL088W GO:GO:0097047 Uniprot:P06786
Length = 1428
Score = 537 (194.1 bits), Expect = 3.7e-139, Sum P(6) = 3.7e-139
Identities = 111/176 (63%), Positives = 136/176 (77%)
Query: 453 TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVRE 512
T PKLEDAN AGTK CTL+LTEGDSA SLAV+GL VVGRD YG +PLRGK+LNVRE
Sbjct: 424 TNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVRE 483
Query: 513 ATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIIN 572
A+ QIL+NAEI + KI+GLQ+ KKY ED K+LRYG LMIMTDQD DGSHIKGLIIN
Sbjct: 484 ASADQILKNAEIQAIKKIMGLQHRKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIIN 540
Query: 573 FIHHNWPTLLRLP-FLEEFITPIIKA--TK-AREELSFYSLPEFEEWKEETTNWHT 624
F+ ++P LL + FL EFITPIIK TK + ++FY++P++E+W+EE ++ T
Sbjct: 541 FLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFT 596
Score = 533 (192.7 bits), Expect = 3.7e-139, Sum P(6) = 3.7e-139
Identities = 140/336 (41%), Positives = 193/336 (57%)
Query: 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFD 89
+S YQK SQLEHIL RPDTYIGSVE + W+ + ET+ M + +T VPGL+KIFD
Sbjct: 6 VSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFD 65
Query: 90 EILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
EILVNA DNK RDP M I + ++ E +TI V N+GKGIP+ H E +++P MIFGHLL
Sbjct: 66 EILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLL 125
Query: 150 TSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET 209
TSSNY+D+E KVTG +G L + ++ E T N G K + + +
Sbjct: 126 TSSNYDDDEKKVTG--GRNGYGAKLCNI-FSTEFILETADLN-VGQKYVQKWENNMSI-- 179
Query: 210 SCSEYK-KSFKQVWKDNMSKVT-SPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDL 266
C K S+K+ + +KVT P++ + G K+ I + + ++ ++ + D+
Sbjct: 180 -CHPPKITSYKK--GPSYTKVTFKPDLTRFGMKELDNDIL---GVMRRRVYDINGSVRDI 233
Query: 267 ITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDG----DPVKIIYENVNP 322
Y S K ++ F N +L +K+ + K D EDG D I+YE +N
Sbjct: 234 ---NVYLNGKSLK-IRNFKNYVELYLKSLEK--KRQLDN-GEDGAAKSDIPTILYERINN 286
Query: 323 RWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVD 358
RWEVA A SD FQQ+SFVNSIATT GG HV+ + D
Sbjct: 287 RWEVAFAVSDISFQQISFVNSIATTMGGTHVNYITD 322
Score = 262 (97.3 bits), Expect = 3.7e-139, Sum P(6) = 3.7e-139
Identities = 49/113 (43%), Positives = 67/113 (59%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+PI+PM+LVNGAEGIGTGW T IP NP EI+ NI+ ++ E+ M PW++ +
Sbjct: 813 VEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGW 872
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWXXXXXXXXXXXXHGAEK 772
G I+ R+ + G I + D+ LEITEL W G +K
Sbjct: 873 TGTIEEIEPLRYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDK 925
Score = 148 (57.2 bits), Expect = 3.7e-139, Sum P(6) = 3.7e-139
Identities = 31/67 (46%), Positives = 43/67 (64%)
Query: 396 QMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTCV 455
Q+ K + +I + ++K FQ+KN+++IFINCLI NP F SQTKE +T + FGS C
Sbjct: 323 QIVKKISEILKKKKKKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCE 382
Query: 456 PKLEDAN 462
LE N
Sbjct: 383 IPLEYIN 389
Score = 146 (56.5 bits), Expect = 3.7e-139, Sum P(6) = 3.7e-139
Identities = 39/101 (38%), Positives = 52/101 (51%)
Query: 811 NELAKPQKTGPQLERQE-----RQAAEGEDDEAGSQTQEEE---DPDK---DYDYLLGMT 859
N+ KP P E E + A E+DE S E P++ Y+YLLGM
Sbjct: 1061 NKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMR 1120
Query: 860 FWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDA 900
WSLT ER +LLK++ +K TEL L K + D+W+ DL A
Sbjct: 1121 IWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKA 1161
Score = 49 (22.3 bits), Expect = 3.7e-139, Sum P(6) = 3.7e-139
Identities = 20/72 (27%), Positives = 34/72 (47%)
Query: 1487 EESKSEAVNSEE---SKSEAANPIESKQTVKTKESKLETVNISAPKPQASST-----KNA 1538
E+ E + E+ +KS+A I+ ++T E+K E +AP +SS+ K
Sbjct: 1222 EDKNFERILLEQKLVTKSKAPTKIKKEKTPSVSETKTEEEE-NAPSSTSSSSIFDIKKED 1280
Query: 1539 SNEDFLGEFYNK 1550
+E L + NK
Sbjct: 1281 KDEGELSKISNK 1292
Score = 47 (21.6 bits), Expect = 5.5e-78, Sum P(5) = 5.5e-78
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 403 DIGVRLGGMALKPFQVKNHIWIFINCL 429
DI V L G +LK KN++ +++ L
Sbjct: 232 DINVYLNGKSLKIRNFKNYVELYLKSL 258
Score = 40 (19.1 bits), Expect = 1.1e-105, Sum P(5) = 1.1e-105
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 1386 YHHYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEW 1421
Y + E ++ T I K ++ +K ++PEW
Sbjct: 782 YIYTELNKLTRKIFHPADDPLYKYIQEDEKTVEPEW 817
Score = 40 (19.1 bits), Expect = 1.9e-25, Sum P(4) = 1.9e-25
Identities = 7/40 (17%), Positives = 22/40 (55%)
Query: 126 KGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVV 165
K I ++H+ + ++ +GHL+ ++ + + + G++
Sbjct: 499 KKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLI 538
Score = 39 (18.8 bits), Expect = 5.4e-128, Sum P(6) = 5.4e-128
Identities = 18/72 (25%), Positives = 31/72 (43%)
Query: 1366 YYIVPSAEELKALMMLHGGIYHHYE---SSRTTHIIASNLPHTKIKKLKPGDKIIKPEWI 1422
+ I S EE+ + G Y ++ +++A + PH KIKK ++I+ +
Sbjct: 943 FIITLSPEEMAKTRKI--GFYERFKLISPISLMNMVAFD-PHGKIKKYNSVNEILSEFYY 999
Query: 1423 VDSISAGKLLDH 1434
V K DH
Sbjct: 1000 VRLEYYQKRKDH 1011
Score = 39 (18.8 bits), Expect = 8.0e-128, Sum P(5) = 8.0e-128
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 1518 SKLETVNISAPKPQASSTKNASNEDFLGEFY 1548
S + +N+ A P K S + L EFY
Sbjct: 968 SPISLMNMVAFDPHGKIKKYNSVNEILSEFY 998
>CGD|CAL0005199 [details] [associations]
symbol:TOP2 species:5476 "Candida albicans" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IGI;ISS]
[GO:0036244 "cellular response to neutral pH" evidence=IMP]
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0030447 "filamentous growth" evidence=IMP] [GO:0097047 "DNA
replication termination region" evidence=IEA] [GO:0000795
"synaptonemal complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0006406
"mRNA export from nucleus" evidence=IEA] [GO:0006333 "chromatin
assembly or disassembly" evidence=IEA] [GO:0044774 "mitotic DNA
integrity checkpoint" evidence=IEA] [GO:0000712 "resolution of
meiotic recombination intermediates" evidence=IEA] [GO:0097046
"replication fork progression beyond termination site"
evidence=IEA] [GO:0031055 "chromatin remodeling at centromere"
evidence=IEA] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IEA] [GO:0000019 "regulation of mitotic
recombination" evidence=IEA] [GO:0042790 "transcription of nuclear
large rRNA transcript from RNA polymerase I promoter" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 SMART:SM00387 SMART:SM00433
SMART:SM00434 CGD:CAL0005199 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 GO:GO:0036244 GO:GO:0036178
GO:GO:0009267 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0036170
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0006265 EMBL:AACQ01000084 EMBL:AACQ01000083 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 RefSeq:XP_715530.1 RefSeq:XP_715586.1
ProteinModelPortal:Q5A1E7 SMR:Q5A1E7 STRING:Q5A1E7 GeneID:3642722
GeneID:3642777 KEGG:cal:CaO19.10391 KEGG:cal:CaO19.2873
Uniprot:Q5A1E7
Length = 1461
Score = 517 (187.1 bits), Expect = 2.3e-138, Sum P(7) = 2.3e-138
Identities = 115/192 (59%), Positives = 142/192 (73%)
Query: 437 SQTKENMTLQK--GSFGSTCVPK--LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGV 492
+ E+ LQK GS S + L DAN AGTK+ +CTLILTEG SA +LAV+GL V
Sbjct: 459 ANANEDKALQKADGSRKSRIKGQVNLVDANKAGTKDGHNCTLILTEGLSAMNLAVAGLSV 518
Query: 493 VGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGR 552
VGRD YG FPLRGKLLNVREA+ QI +NAEIN+L +I+GLQ+ K YT E++K+LRYG
Sbjct: 519 VGRDYYGCFPLRGKLLNVREASADQISKNAEINSLKQIIGLQHKKVYTA-ENIKSLRYGH 577
Query: 553 LMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKAT-KAR-----EELS 605
+MIMTDQDQDGSHIKGLIINF+ ++P LL +P FL EFITPI+K T KAR +
Sbjct: 578 IMIMTDQDQDGSHIKGLIINFLETSFPGLLDIPGFLLEFITPIVKVTVKARGAGGKRVIP 637
Query: 606 FYSLPEFEEWKE 617
FY++PEFE W++
Sbjct: 638 FYTMPEFEHWRD 649
Score = 509 (184.2 bits), Expect = 2.3e-138, Sum P(7) = 2.3e-138
Identities = 141/382 (36%), Positives = 207/382 (54%)
Query: 1 MSSDESDFDPDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPI- 59
MS ESD+ D ++ P+ KK T N S K Q + + + + +P
Sbjct: 1 MSESESDYFTDGSEDDFVPTSKKSTKKNASSKSK--QPLGDATNSTVS-SSRSSTPKPTN 57
Query: 60 -TETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQ---RD----PKMNCI--K 109
+ET ++ + H+ +R TY+ + K E+ + + ++ P + I +
Sbjct: 58 ASETYQKLS-QLEHILKRPDTYIGSVEKTKTEMWCFDAETESMVFKEVTIVPGLYKIFDE 116
Query: 110 ITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMI 169
I VN N I + K I V + E + M G + + E +P +I
Sbjct: 117 ILVNAADNKIRD-PSMKNIRV-KIDAENNIIEVMNDGKGIPIEMHTKENM----YIPELI 170
Query: 170 FGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKV 229
FG+LLTSSNY+D++ KVTGGRNG+GAKLCNIFS++F VET+ K +KQ W +NMS V
Sbjct: 171 FGNLLTSSNYDDDQKKVTGGRNGFGAKLCNIFSTQFEVETADLNMGKLYKQSWTNNMSNV 230
Query: 230 TSPEIKS-GSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGE 288
+ P+I + K ++TKITF PDL+KF M LD D++ ++ RR YD + K+ ++LN +
Sbjct: 231 SKPKITTLRPKKEYTKITFRPDLSKFDMDCLDNDLLSVLRRRVYDLCGTVKNCNIYLNDK 290
Query: 289 KLPVKNFQDYVKLYT----DRQDE----DGDPVK----IIYENVNPRWEVAIAPSDRGFQ 336
+L + +F+ YV++Y +R E DG +K I++E N RWEVA A SD F
Sbjct: 291 RLNISSFKGYVEMYVKAIKERSPEPEPQDGT-IKNFTTIVHEVFNDRWEVAFAVSDGSFN 349
Query: 337 QVSFVNSIATTKGGRHVDAVVD 358
QVSFVNSIATT GG HV V D
Sbjct: 350 QVSFVNSIATTSGGTHVKYVSD 371
Score = 305 (112.4 bits), Expect = 2.3e-138, Sum P(7) = 2.3e-138
Identities = 49/96 (51%), Positives = 73/96 (76%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+P++PM+LVNGAEGIGTGW T IP++NP+++V NI+R++ GE+ M PWYK +
Sbjct: 873 VEPEWYLPVLPMILVNGAEGIGTGWSTNIPSYNPKDLVTNIRRLMNGEELQEMTPWYKGW 932
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
G+++ G +F V+G I +D + +EITE+ V W
Sbjct: 933 GGDLEPMGPQKFKVSGRIEQIDSNTVEITEIPVKTW 968
Score = 163 (62.4 bits), Expect = 2.3e-138, Sum P(7) = 2.3e-138
Identities = 39/96 (40%), Positives = 53/96 (55%)
Query: 824 ERQERQAAEGEDDEAGSQTQ--EEEDPDK----------DYDYLLGMTFWSLTMERKNEL 871
E +E Q EG++D + +E +P++ YDYLLGM WSLT ER +
Sbjct: 1140 EEEETQEQEGDEDVGNTSVANIQEGEPEQAAHVPETIYSSYDYLLGMAIWSLTYERFMRI 1199
Query: 872 LKKRDDKMTELNILKKKAPTDLWSDDLDA-LREKDK 906
+++RD K ELN L K+ DLW+ DLD L E DK
Sbjct: 1200 MQQRDQKEAELNALLSKSAKDLWNQDLDEFLAEFDK 1235
Score = 116 (45.9 bits), Expect = 2.3e-138, Sum P(7) = 2.3e-138
Identities = 20/41 (48%), Positives = 31/41 (75%)
Query: 411 MALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFG 451
+ +KP +V++++++FINCLI NP F SQTKE +T + FG
Sbjct: 391 LMIKPQEVRDNMFLFINCLIENPAFTSQTKEQLTTKVSQFG 431
Score = 59 (25.8 bits), Expect = 2.3e-138, Sum P(7) = 2.3e-138
Identities = 21/80 (26%), Positives = 39/80 (48%)
Query: 1135 ESRKRTQTSQGTESEERKGHLRRWRRKEEESTQTVQVELREGVNISA-P--------KPQ 1185
E + + S G + + K + K++ + + V+VE +E +ISA P +PQ
Sbjct: 1241 EQERESLASNG-KKKSTKRRAKATATKDQPNNKKVKVEPKEKKSISAKPVVKKEASNEPQ 1299
Query: 1186 ASSTKNASNEDFLGEFYNKS 1205
ASS+ +D + F++ S
Sbjct: 1300 ASSSSKPKEKDDILSFFSSS 1319
Score = 59 (25.8 bits), Expect = 2.8e-126, Sum P(6) = 2.8e-126
Identities = 31/112 (27%), Positives = 50/112 (44%)
Query: 845 EEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
++D D+D L + + E K+ +K + K++ D +DL+ L
Sbjct: 1347 DDDDDEDIFNLNSSSSTKVKKETKSRSATPAAEKSKKPKSSGKQSILDEL-EDLEILGNF 1405
Query: 905 DKIHPCPGGNRTRGLA--LKRQTRYQPSNRVLTSRDEP------MVVSSGED 948
DK P P RTR A KR T+ +P ++ S DE +V+S G+D
Sbjct: 1406 DK--PEPKERRTRETASTTKRNTKKKPV--IIDSDDEDEDEEDDIVMSDGDD 1453
Score = 48 (22.0 bits), Expect = 4.0e-137, Sum P(6) = 4.0e-137
Identities = 13/62 (20%), Positives = 32/62 (51%)
Query: 1490 KSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYN 1549
+++A +++ + +E K+ K+ +K ++ +PQASS+ +D + F++
Sbjct: 1259 RAKATATKDQPNNKKVKVEPKEK-KSISAKPVVKKEASNEPQASSSSKPKEKDDILSFFS 1317
Query: 1550 KS 1551
S
Sbjct: 1318 SS 1319
Score = 48 (22.0 bits), Expect = 2.1e-126, Sum P(7) = 2.1e-126
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 807 VFHDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKD 851
+ ++ K K G ++ E + G+D + +TQE+E D+D
Sbjct: 1110 LLEEHNFTKFSKDGKPIKSSE-ELLTGDDADEEEETQEQEG-DED 1152
Score = 47 (21.6 bits), Expect = 2.3e-138, Sum P(7) = 2.3e-138
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 1487 EESKSEAVNSEESKSEAANPIESKQTVKTKESKLETV-NISAPKPQASSTKNASN 1540
+E+KS + KS+ KQ++ + LE + N P+P+ T+ ++
Sbjct: 1367 KETKSRSATPAAEKSKKPKS-SGKQSILDELEDLEILGNFDKPEPKERRTRETAS 1420
Score = 40 (19.1 bits), Expect = 1.1e-32, Sum P(5) = 1.1e-32
Identities = 12/69 (17%), Positives = 36/69 (52%)
Query: 101 RDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF----VPTMIFGHLLTSSNYND 156
R +N + + +Q + + N+ K I ++HK K++ + ++ +GH++ ++ +
Sbjct: 530 RGKLLNVREASADQISKNAEI-NSLKQIIGLQHK--KVYTAENIKSLRYGHIMIMTDQDQ 586
Query: 157 EEDKVTGVV 165
+ + G++
Sbjct: 587 DGSHIKGLI 595
>UNIPROTKB|Q5A1E7 [details] [associations]
symbol:TOP2 "DNA topoisomerase 2" species:237561 "Candida
albicans SC5314" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IGI] [GO:0009267 "cellular
response to starvation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:0036244 "cellular response to neutral pH" evidence=IMP]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 SMART:SM00387 SMART:SM00433
SMART:SM00434 CGD:CAL0005199 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 GO:GO:0036244 GO:GO:0036178
GO:GO:0009267 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0036170
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0006265 EMBL:AACQ01000084 EMBL:AACQ01000083 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 RefSeq:XP_715530.1 RefSeq:XP_715586.1
ProteinModelPortal:Q5A1E7 SMR:Q5A1E7 STRING:Q5A1E7 GeneID:3642722
GeneID:3642777 KEGG:cal:CaO19.10391 KEGG:cal:CaO19.2873
Uniprot:Q5A1E7
Length = 1461
Score = 517 (187.1 bits), Expect = 2.3e-138, Sum P(7) = 2.3e-138
Identities = 115/192 (59%), Positives = 142/192 (73%)
Query: 437 SQTKENMTLQK--GSFGSTCVPK--LEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGV 492
+ E+ LQK GS S + L DAN AGTK+ +CTLILTEG SA +LAV+GL V
Sbjct: 459 ANANEDKALQKADGSRKSRIKGQVNLVDANKAGTKDGHNCTLILTEGLSAMNLAVAGLSV 518
Query: 493 VGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGR 552
VGRD YG FPLRGKLLNVREA+ QI +NAEIN+L +I+GLQ+ K YT E++K+LRYG
Sbjct: 519 VGRDYYGCFPLRGKLLNVREASADQISKNAEINSLKQIIGLQHKKVYTA-ENIKSLRYGH 577
Query: 553 LMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKAT-KAR-----EELS 605
+MIMTDQDQDGSHIKGLIINF+ ++P LL +P FL EFITPI+K T KAR +
Sbjct: 578 IMIMTDQDQDGSHIKGLIINFLETSFPGLLDIPGFLLEFITPIVKVTVKARGAGGKRVIP 637
Query: 606 FYSLPEFEEWKE 617
FY++PEFE W++
Sbjct: 638 FYTMPEFEHWRD 649
Score = 509 (184.2 bits), Expect = 2.3e-138, Sum P(7) = 2.3e-138
Identities = 141/382 (36%), Positives = 207/382 (54%)
Query: 1 MSSDESDFDPDVQQNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPI- 59
MS ESD+ D ++ P+ KK T N S K Q + + + + +P
Sbjct: 1 MSESESDYFTDGSEDDFVPTSKKSTKKNASSKSK--QPLGDATNSTVS-SSRSSTPKPTN 57
Query: 60 -TETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQ---RD----PKMNCI--K 109
+ET ++ + H+ +R TY+ + K E+ + + ++ P + I +
Sbjct: 58 ASETYQKLS-QLEHILKRPDTYIGSVEKTKTEMWCFDAETESMVFKEVTIVPGLYKIFDE 116
Query: 110 ITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMI 169
I VN N I + K I V + E + M G + + E +P +I
Sbjct: 117 ILVNAADNKIRD-PSMKNIRV-KIDAENNIIEVMNDGKGIPIEMHTKENM----YIPELI 170
Query: 170 FGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKV 229
FG+LLTSSNY+D++ KVTGGRNG+GAKLCNIFS++F VET+ K +KQ W +NMS V
Sbjct: 171 FGNLLTSSNYDDDQKKVTGGRNGFGAKLCNIFSTQFEVETADLNMGKLYKQSWTNNMSNV 230
Query: 230 TSPEIKS-GSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGE 288
+ P+I + K ++TKITF PDL+KF M LD D++ ++ RR YD + K+ ++LN +
Sbjct: 231 SKPKITTLRPKKEYTKITFRPDLSKFDMDCLDNDLLSVLRRRVYDLCGTVKNCNIYLNDK 290
Query: 289 KLPVKNFQDYVKLYT----DRQDE----DGDPVK----IIYENVNPRWEVAIAPSDRGFQ 336
+L + +F+ YV++Y +R E DG +K I++E N RWEVA A SD F
Sbjct: 291 RLNISSFKGYVEMYVKAIKERSPEPEPQDGT-IKNFTTIVHEVFNDRWEVAFAVSDGSFN 349
Query: 337 QVSFVNSIATTKGGRHVDAVVD 358
QVSFVNSIATT GG HV V D
Sbjct: 350 QVSFVNSIATTSGGTHVKYVSD 371
Score = 305 (112.4 bits), Expect = 2.3e-138, Sum P(7) = 2.3e-138
Identities = 49/96 (51%), Positives = 73/96 (76%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+P++PM+LVNGAEGIGTGW T IP++NP+++V NI+R++ GE+ M PWYK +
Sbjct: 873 VEPEWYLPVLPMILVNGAEGIGTGWSTNIPSYNPKDLVTNIRRLMNGEELQEMTPWYKGW 932
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
G+++ G +F V+G I +D + +EITE+ V W
Sbjct: 933 GGDLEPMGPQKFKVSGRIEQIDSNTVEITEIPVKTW 968
Score = 163 (62.4 bits), Expect = 2.3e-138, Sum P(7) = 2.3e-138
Identities = 39/96 (40%), Positives = 53/96 (55%)
Query: 824 ERQERQAAEGEDDEAGSQTQ--EEEDPDK----------DYDYLLGMTFWSLTMERKNEL 871
E +E Q EG++D + +E +P++ YDYLLGM WSLT ER +
Sbjct: 1140 EEEETQEQEGDEDVGNTSVANIQEGEPEQAAHVPETIYSSYDYLLGMAIWSLTYERFMRI 1199
Query: 872 LKKRDDKMTELNILKKKAPTDLWSDDLDA-LREKDK 906
+++RD K ELN L K+ DLW+ DLD L E DK
Sbjct: 1200 MQQRDQKEAELNALLSKSAKDLWNQDLDEFLAEFDK 1235
Score = 116 (45.9 bits), Expect = 2.3e-138, Sum P(7) = 2.3e-138
Identities = 20/41 (48%), Positives = 31/41 (75%)
Query: 411 MALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFG 451
+ +KP +V++++++FINCLI NP F SQTKE +T + FG
Sbjct: 391 LMIKPQEVRDNMFLFINCLIENPAFTSQTKEQLTTKVSQFG 431
Score = 59 (25.8 bits), Expect = 2.3e-138, Sum P(7) = 2.3e-138
Identities = 21/80 (26%), Positives = 39/80 (48%)
Query: 1135 ESRKRTQTSQGTESEERKGHLRRWRRKEEESTQTVQVELREGVNISA-P--------KPQ 1185
E + + S G + + K + K++ + + V+VE +E +ISA P +PQ
Sbjct: 1241 EQERESLASNG-KKKSTKRRAKATATKDQPNNKKVKVEPKEKKSISAKPVVKKEASNEPQ 1299
Query: 1186 ASSTKNASNEDFLGEFYNKS 1205
ASS+ +D + F++ S
Sbjct: 1300 ASSSSKPKEKDDILSFFSSS 1319
Score = 59 (25.8 bits), Expect = 2.8e-126, Sum P(6) = 2.8e-126
Identities = 31/112 (27%), Positives = 50/112 (44%)
Query: 845 EEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
++D D+D L + + E K+ +K + K++ D +DL+ L
Sbjct: 1347 DDDDDEDIFNLNSSSSTKVKKETKSRSATPAAEKSKKPKSSGKQSILDEL-EDLEILGNF 1405
Query: 905 DKIHPCPGGNRTRGLA--LKRQTRYQPSNRVLTSRDEP------MVVSSGED 948
DK P P RTR A KR T+ +P ++ S DE +V+S G+D
Sbjct: 1406 DK--PEPKERRTRETASTTKRNTKKKPV--IIDSDDEDEDEEDDIVMSDGDD 1453
Score = 48 (22.0 bits), Expect = 4.0e-137, Sum P(6) = 4.0e-137
Identities = 13/62 (20%), Positives = 32/62 (51%)
Query: 1490 KSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYN 1549
+++A +++ + +E K+ K+ +K ++ +PQASS+ +D + F++
Sbjct: 1259 RAKATATKDQPNNKKVKVEPKEK-KSISAKPVVKKEASNEPQASSSSKPKEKDDILSFFS 1317
Query: 1550 KS 1551
S
Sbjct: 1318 SS 1319
Score = 48 (22.0 bits), Expect = 2.1e-126, Sum P(7) = 2.1e-126
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 807 VFHDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKD 851
+ ++ K K G ++ E + G+D + +TQE+E D+D
Sbjct: 1110 LLEEHNFTKFSKDGKPIKSSE-ELLTGDDADEEEETQEQEG-DED 1152
Score = 47 (21.6 bits), Expect = 2.3e-138, Sum P(7) = 2.3e-138
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 1487 EESKSEAVNSEESKSEAANPIESKQTVKTKESKLETV-NISAPKPQASSTKNASN 1540
+E+KS + KS+ KQ++ + LE + N P+P+ T+ ++
Sbjct: 1367 KETKSRSATPAAEKSKKPKS-SGKQSILDELEDLEILGNFDKPEPKERRTRETAS 1420
Score = 40 (19.1 bits), Expect = 1.1e-32, Sum P(5) = 1.1e-32
Identities = 12/69 (17%), Positives = 36/69 (52%)
Query: 101 RDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF----VPTMIFGHLLTSSNYND 156
R +N + + +Q + + N+ K I ++HK K++ + ++ +GH++ ++ +
Sbjct: 530 RGKLLNVREASADQISKNAEI-NSLKQIIGLQHK--KVYTAENIKSLRYGHIMIMTDQDQ 586
Query: 157 EEDKVTGVV 165
+ + G++
Sbjct: 587 DGSHIKGLI 595
>DICTYBASE|DDB_G0270418 [details] [associations]
symbol:top2 "DNA topoisomerase II" species:44689
"Dictyostelium discoideum" [GO:0006265 "DNA topological change"
evidence=IEA;ISS;IBA] [GO:0006259 "DNA metabolic process"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0009295 "nucleoid"
evidence=IBA] [GO:0044774 "mitotic DNA integrity checkpoint"
evidence=IBA] [GO:0007059 "chromosome segregation" evidence=IBA]
[GO:0006312 "mitotic recombination" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 dictyBase:DDB_G0270418 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
ProtClustDB:PTZ00108 OMA:ADNKQND RefSeq:XP_646786.1 HSSP:P11388
ProteinModelPortal:Q55BP5 SMR:Q55BP5 STRING:Q55BP5 PRIDE:Q55BP5
EnsemblProtists:DDB0231510 GeneID:8617759 KEGG:ddi:DDB_G0270418
Uniprot:Q55BP5
Length = 1521
Score = 563 (203.2 bits), Expect = 5.3e-136, Sum P(6) = 5.3e-136
Identities = 112/184 (60%), Positives = 136/184 (73%)
Query: 436 DSQTKENMTLQKGSFGSTCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGR 495
D + T G G +PKL+DAN AG S DCTLILTEGDSAKSLA +G+ VVG+
Sbjct: 491 DQSALKRSTSSGGKKGKVSIPKLDDANLAGGTKSEDCTLILTEGDSAKSLATAGISVVGK 550
Query: 496 DKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMI 555
D YG FPL+GKLLNVR+ + K ++ N EINN+V ILGL+Y K Y T+ D LRYG LMI
Sbjct: 551 DHYGAFPLKGKLLNVRDQSTK-VINNDEINNIVTILGLKYGKVYETLSD---LRYGHLMI 606
Query: 556 MTDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATKAREE-LSFYSLPEFE 613
MTDQD DGSHIKGLIIN +HH WPTLLR+P FL EFITPI+K K ++ +SFY++PEF
Sbjct: 607 MTDQDHDGSHIKGLIINMVHHFWPTLLRMPGFLVEFITPIVKVFKNNQKPISFYTMPEFL 666
Query: 614 EWKE 617
+W+E
Sbjct: 667 KWRE 670
Score = 481 (174.4 bits), Expect = 5.3e-136, Sum P(6) = 5.3e-136
Identities = 111/247 (44%), Positives = 154/247 (62%)
Query: 109 KITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTM 168
+I VN N N K I VV + EK F+ G + ++ E K+ +P +
Sbjct: 159 EILVNAADNKQRE-GNMKFIKVVIDR-EKGFISVTNDGAGIPIQVHS--EHKI--YIPEL 212
Query: 169 IFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSK 228
IFG+LLTSS+Y+D E ++TGGRNG+GAKL NIFS+KF+VE + S+ KK +KQ + +NM
Sbjct: 213 IFGNLLTSSHYDDSEKRLTGGRNGFGAKLANIFSTKFIVECADSKSKKLYKQTFTNNMRS 272
Query: 229 VTSPEIKS-GSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNG 287
P+I S +K D+TKITF P+L +F M D D+V L+++R YD A +KV LN
Sbjct: 273 KEDPKITSYQNKTDYTKITFYPELDRFGMVEFDDDLVALLSKRVYDIAGCNPTLKVSLND 332
Query: 288 EKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRG-FQQVSFVNSIAT 346
E+L +++F+ Y+ LY DE+ P K+ YE V+ RWE+A+ S F QVSFVNSI T
Sbjct: 333 EELGIRSFEKYINLYFP--DEENAP-KVYYEKVSDRWELAVTLSKESQFNQVSFVNSICT 389
Query: 347 TKGGRHV 353
KGG HV
Sbjct: 390 VKGGTHV 396
Score = 393 (143.4 bits), Expect = 3.0e-126, Sum P(7) = 3.0e-126
Identities = 79/165 (47%), Positives = 110/165 (66%)
Query: 3 SDESDFDPDVQQNGNGPSPKKKTPANKM----SVEKIYQKKSQLEHILLRPDTYIGSVEP 58
SD DF D + + + K A+ S+E+IYQKK L+ ILLRPDTYIGS E
Sbjct: 70 SDNDDFSGDDKSSSSDNENVFKNIASSAKKGKSIEEIYQKKELLDQILLRPDTYIGSTER 129
Query: 59 ITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNT 118
E +W+ E M R++++VPG+YKIFDEILVNA DNKQR+ M IK+ +++E
Sbjct: 130 QEEELWVW--EDKRMVHRKVSFVPGIYKIFDEILVNAADNKQREGNMKFIKVVIDREKGF 187
Query: 119 ISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTG 163
ISV N+G GIP+ H + K+++P +IFG+LLTSS+Y+D E ++TG
Sbjct: 188 ISVTNDGAGIPIQVHSEHKIYIPELIFGNLLTSSHYDDSEKRLTG 232
Score = 251 (93.4 bits), Expect = 5.3e-136, Sum P(6) = 5.3e-136
Identities = 45/102 (44%), Positives = 69/102 (67%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
+++P++YIP+IPM+LVNG GIGTGW + IPN+NPR+++ N++ I G+ P+KPWY+
Sbjct: 891 KVQPKFYIPVIPMILVNGCVGIGTGWSSTIPNYNPRDLIQNMRLAIDGKPLKPIKPWYRG 950
Query: 719 FKGEIDYCGDSR-----FVVNGEIAILDDDKLEITELQVGKW 755
F G I+ S+ ++ G L D++ EITEL +G W
Sbjct: 951 FLGSIEANQGSKVQGGQYLSKGIWKKLSDNRFEITELPIGFW 992
Score = 160 (61.4 bits), Expect = 5.3e-136, Sum P(6) = 5.3e-136
Identities = 37/114 (32%), Positives = 63/114 (55%)
Query: 827 ERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILK 886
E AA D+E +E++D K YDYLL + WSLT+ER +L+++RD K E +IL
Sbjct: 1202 EEDAAISSDEEKDGAQEEQDDDTKGYDYLLSLPLWSLTLERVKKLIEERDSKKKEWDILL 1261
Query: 887 KKAPTDLWSDDLDALREK--DK-IHPCPGGNRTRGLALKRQTRYQPSNRVLTSR 937
+++ DLDAL + D+ + N+T L + +T+ P + ++++
Sbjct: 1262 STPIQEIYKRDLDALEKALDDQDAYDESLKNQTESLKKRTKTKALPRAKKISAK 1315
Score = 149 (57.5 bits), Expect = 5.3e-136, Sum P(6) = 5.3e-136
Identities = 27/48 (56%), Positives = 34/48 (70%)
Query: 409 GGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTCVP 456
G +KP +KNH+ +F+NCLI NP FDSQTKE +T + SFGS C P
Sbjct: 417 GSADIKPAFIKNHLSVFVNCLIENPHFDSQTKETLTSKISSFGSRCEP 464
Score = 53 (23.7 bits), Expect = 2.1e-125, Sum P(5) = 2.1e-125
Identities = 20/79 (25%), Positives = 33/79 (41%)
Query: 814 AKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLK 873
A P+KT +E + ++ E D+ Q + E P K T + K
Sbjct: 1411 APPKKTSKVIELSDE--SDQESDQESDQGSDPESPPKRSKAPPKKPTTIATKKATTSKSK 1468
Query: 874 KRDDKMTELNILKKKAPTD 892
DDK ++ ++K APT+
Sbjct: 1469 VIDDKSSDDEVIK--APTN 1485
Score = 42 (19.8 bits), Expect = 5.3e-136, Sum P(6) = 5.3e-136
Identities = 10/56 (17%), Positives = 25/56 (44%)
Query: 1486 TEESKSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNE 1541
++ES E+ + S+ +P + + K + + T + K + K++ +E
Sbjct: 1423 SDESDQESDQESDQGSDPESPPKRSKAPPKKPTTIATKKATTSKSKVIDDKSSDDE 1478
Score = 42 (19.8 bits), Expect = 5.3e-136, Sum P(6) = 5.3e-136
Identities = 25/116 (21%), Positives = 45/116 (38%)
Query: 2159 TKSSSLPMYISQASQILKEVLFI-VNKLKVDPVEL---RGIGIQVSKLEHQSKTLATIDT 2214
TK+ +LP +++++K+ + KL V++ + SK + T +T +
Sbjct: 1301 TKTKALPRAKKISAKVVKDTKEAPLTKLVKPTVKIPTTTDSNVSGSKRKKSDDTTSTSTS 1360
Query: 2215 FFTNKG-KPPDQL-----NNPRPGPSNSTITPGPSNSTLPPGPSNSTLPPGPSNST 2264
T+ KP + P P ST+ S+S S+ P P T
Sbjct: 1361 TTTSSNTKPIESFFAKEDKKPTPAVKKSTLVSLDSDSDFDDDVVVSSKPKAPPKKT 1416
Score = 42 (19.8 bits), Expect = 1.1e-123, Sum P(6) = 1.1e-123
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 1873 WAEAYQEMLSCVQSAMKHKPSSESKIVSAVS 1903
W + Y+E+L +++ K E K A S
Sbjct: 992 WTQDYRELLDELETPGTRKKKKEEKEKKAAS 1022
Score = 40 (19.1 bits), Expect = 8.6e-136, Sum P(6) = 8.6e-136
Identities = 17/83 (20%), Positives = 31/83 (37%)
Query: 1441 TGTDAKPLTKLLQKSYFENT-EAPCCSKXXXXXXXXXXXXXXXXDNTEESKSEAVNSEES 1499
T T A P K + ++T EAP +K ++ KS+ S +
Sbjct: 1301 TKTKALPRAKKISAKVVKDTKEAPL-TKLVKPTVKIPTTTDSNVSGSKRKKSDDTTSTST 1359
Query: 1500 KSEAANPIESKQTVKTKESKLET 1522
+ ++ + ++ KE K T
Sbjct: 1360 STTTSSNTKPIESFFAKEDKKPT 1382
Score = 40 (19.1 bits), Expect = 3.0e-126, Sum P(7) = 3.0e-126
Identities = 14/58 (24%), Positives = 22/58 (37%)
Query: 298 YVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPS-DRGFQQVSFVNSIATTKGGRHVD 354
Y + +T+ DP Y+N ++ P DR F V F + + R D
Sbjct: 262 YKQTFTNNMRSKEDPKITSYQNKTDYTKITFYPELDR-FGMVEFDDDLVALLSKRVYD 318
Score = 38 (18.4 bits), Expect = 2.8e-123, Sum P(6) = 2.8e-123
Identities = 12/74 (16%), Positives = 31/74 (41%)
Query: 861 WSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREKDKIHPCPGGNRTRGLA 920
W + + + + KRD E + + A + + ++L+++ K P +
Sbjct: 1257 WDILLSTPIQEIYKRDLDALEKALDDQDAYDESLKNQTESLKKRTKTKALPRAKKISAKV 1316
Query: 921 LKRQTRYQPSNRVL 934
+K T+ P +++
Sbjct: 1317 VK-DTKEAPLTKLV 1329
Score = 38 (18.4 bits), Expect = 1.1e-24, Sum P(4) = 1.1e-24
Identities = 5/25 (20%), Positives = 15/25 (60%)
Query: 145 FGHLLTSSNYNDEEDKVTGVVPTMI 169
+GHL+ ++ + + + G++ M+
Sbjct: 601 YGHLMIMTDQDHDGSHIKGLIINMV 625
>UNIPROTKB|Q755V8 [details] [associations]
symbol:AER410W "DNA topoisomerase 2" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:AE016818 GenomeReviews:AE016818_GR GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 OMA:AKEYFQD OrthoDB:EOG4XPTPZ
RefSeq:NP_985265.1 ProteinModelPortal:Q755V8 SMR:Q755V8
STRING:Q755V8 EnsemblFungi:AAS53089 GeneID:4621483
KEGG:ago:AGOS_AER410W PhylomeDB:Q755V8 Uniprot:Q755V8
Length = 1427
Score = 534 (193.0 bits), Expect = 7.3e-135, Sum P(6) = 7.3e-135
Identities = 108/179 (60%), Positives = 138/179 (77%)
Query: 453 TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVRE 512
T PKLEDAN AGTK CTL+LTEGDSA SLAV+GL VVGRD YG FPL+GK+LNVR+
Sbjct: 429 TDYPKLEDANKAGTKEGHKCTLVLTEGDSALSLAVAGLSVVGRDYYGCFPLKGKILNVRD 488
Query: 513 ATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIIN 572
A+ +QI +N EI + KI+GLQ+ K+YT +EDMKTLRYG +MIMTDQD DGSHIKGL+IN
Sbjct: 489 ASVEQIRKNTEIQAIKKIMGLQHKKQYT-IEDMKTLRYGHVMIMTDQDHDGSHIKGLLIN 547
Query: 573 FIHHNWPTLLRLP-FLEEFITPIIKAT--KAREE-LSFYSLPEFEEWKEETTN---WHT 624
F +P LL +P FL EFITPI+K T K +++ + FY+LP++E+W++ ++ W T
Sbjct: 548 FFESTFPGLLDIPGFLIEFITPIMKVTILKPKKQVIPFYNLPDYEKWRDTESHKYVWKT 606
Score = 500 (181.1 bits), Expect = 7.3e-135, Sum P(6) = 7.3e-135
Identities = 133/329 (40%), Positives = 186/329 (56%)
Query: 65 LMNRETNHMER-REITYVPGLYKIFDEIL--VNACDNKQ--RDPKMNCIKITVNQETNTI 119
+M +E N E ++IT + + K D + V D D +M+C+ V ++ N +
Sbjct: 4 IMTKEKNASETYQKITQLEHILKRPDTYIGSVEMQDFHMWVHDAEMDCM---VEKQVNIV 60
Query: 120 -SVWNNGKGIPVVEHKDEKMFVPTM--IFGHLLTSSNY----ND------EEDKVTGV-V 165
++ I +V D K+ P+M I + NY ND E G+ +
Sbjct: 61 PGLFKIFDEI-IVNAADNKVRDPSMKKIEVVINREENYIEVKNDGNGIPIEVHAKEGIYI 119
Query: 166 PTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDN 225
P +IFGHLLTSSNY+D E KVTGGRNGYGAKLCNIFS++F++ETS + + + Q W+ N
Sbjct: 120 PELIFGHLLTSSNYDDNEKKVTGGRNGYGAKLCNIFSTEFILETSDPKSGQKYVQKWESN 179
Query: 226 MSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVF 284
M+ P+I S K +TKITF PDL +F M LD D++ ++ RR YD S +DV V
Sbjct: 180 MNVCHPPKITSYKKGPSYTKITFKPDLQRFGMEVLDDDILGVMRRRVYDINGSVRDVNVS 239
Query: 285 LNGEKLPVKNFQDYVKLYT-----DRQDEDG-------DPVK---IIYENVNPRWEVAIA 329
LNG+ L ++NF+ Y++LY R + G + V I+YE VN RWE+ A
Sbjct: 240 LNGKSLKIRNFKSYMELYMRSLEKKRLIDSGMAPESASEKVNAPTILYEKVNDRWELGFA 299
Query: 330 PSDRGFQQVSFVNSIATTKGGRHVDAVVD 358
SD FQQ+SFVNSIATT GG HV+ + D
Sbjct: 300 VSDISFQQISFVNSIATTSGGTHVNYLTD 328
Score = 390 (142.3 bits), Expect = 2.2e-123, Sum P(6) = 2.2e-123
Identities = 74/133 (55%), Positives = 96/133 (72%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
+ + YQK +QLEHIL RPDTYIGSVE MW+ + E + M +++ VPGL+KIFDE
Sbjct: 10 NASETYQKITQLEHILKRPDTYIGSVEMQDFHMWVHDAEMDCMVEKQVNIVPGLFKIFDE 69
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
I+VNA DNK RDP M I++ +N+E N I V N+G GIP+ H E +++P +IFGHLLT
Sbjct: 70 IIVNAADNKVRDPSMKKIEVVINREENYIEVKNDGNGIPIEVHAKEGIYIPELIFGHLLT 129
Query: 151 SSNYNDEEDKVTG 163
SSNY+D E KVTG
Sbjct: 130 SSNYDDNEKKVTG 142
Score = 271 (100.5 bits), Expect = 7.3e-135, Sum P(6) = 7.3e-135
Identities = 47/113 (41%), Positives = 70/113 (61%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNF 719
+EPEWY+P +PMVLVNGAEGIGTGW T IP NP +IV+N+++++RG++P M PW++ +
Sbjct: 821 VEPEWYVPALPMVLVNGAEGIGTGWSTSIPPFNPIDIVNNLRKLMRGDEPDDMAPWFRGW 880
Query: 720 KGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWXXXXXXXXXXXXHGAEK 772
G + R+ + G I + ++ +EITEL W G E+
Sbjct: 881 NGTMQKIDAQRYRIFGRIEQVGENTVEITELPARTWTTTIKEHLLLALSGNER 933
Score = 145 (56.1 bits), Expect = 7.3e-135, Sum P(6) = 7.3e-135
Identities = 26/42 (61%), Positives = 33/42 (78%)
Query: 413 LKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC 454
+KPFQ++N+I+IFINCLI NP F SQTKE +T + FGS C
Sbjct: 345 VKPFQIRNNIFIFINCLIENPAFTSQTKEQLTTRVRDFGSKC 386
Score = 134 (52.2 bits), Expect = 7.3e-135, Sum P(6) = 7.3e-135
Identities = 39/104 (37%), Positives = 56/104 (53%)
Query: 815 KP--QKTGPQLERQERQAAE--GED-DEAGSQTQEEE---DP-DK--DYDYLLGMTFWSL 863
KP +K LE + E E+ DE G + +E P +K Y+YLLGM WSL
Sbjct: 1073 KPHFEKIDEDLEEMDASDPEEFAEELDEQGGEVADENVVVGPLEKFGTYEYLLGMKIWSL 1132
Query: 864 TMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDA-LREKDK 906
T E+ LL+++ +K EL L K+ DLW+ DLD +RE ++
Sbjct: 1133 TKEKYERLLREKQNKEAELQELLGKSAKDLWNADLDMFVREYEE 1176
Score = 50 (22.7 bits), Expect = 7.3e-135, Sum P(6) = 7.3e-135
Identities = 28/86 (32%), Positives = 38/86 (44%)
Query: 2182 VNKLKVD-PVELRGIGIQVSKLEHQSKTLATIDTFFTNKGKPPDQLNNPRP--GPSNSTI 2238
V KLK + PVE I ++ E Q K A + T TN P Q P+ ++S+
Sbjct: 1221 VKKLKTEQPVER--ILLEPPTQE-QVKKPAKVKTE-TNVSIPK-QTPTPKSKSASASSSK 1275
Query: 2239 TPGPSNSTLPPGPSNSTLPPGPSNST 2264
P P + P PS P S+ST
Sbjct: 1276 VPTPLSKQEPEAPSTIFDAPSSSSST 1301
Score = 45 (20.9 bits), Expect = 2.4e-134, Sum P(6) = 2.4e-134
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 2218 NKGKPPDQLNNPRPGPSNSTITPGPSNSTLPPGPSN 2253
+ K P L+ P + STI PS+S+ P P +
Sbjct: 1272 SSSKVPTPLSKQEP-EAPSTIFDAPSSSSSTPVPGH 1306
Score = 44 (20.5 bits), Expect = 3.1e-134, Sum P(6) = 3.1e-134
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 1595 EDEDLEETFSDNPSPSEPEPVIMHIDM 1621
++ + T D PS S PV H+D+
Sbjct: 1283 QEPEAPSTIFDAPSSSSSTPVPGHLDI 1309
Score = 41 (19.5 bits), Expect = 6.4e-134, Sum P(6) = 6.4e-134
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 2217 TNKGKPPDQLNNPRPGPSNSTITPGPSNSTLPPGPSNSTLPPG 2259
T K K ++ P P + PS P S+ST PG
Sbjct: 1263 TPKSKSASASSSKVPTPLSKQEPEAPSTIFDAPSSSSSTPVPG 1305
Score = 41 (19.5 bits), Expect = 8.4e-102, Sum P(5) = 8.4e-102
Identities = 8/36 (22%), Positives = 21/36 (58%)
Query: 1391 SSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSI 1426
+S + H+ + L + + ++ +K ++PEW V ++
Sbjct: 796 NSISKHVF-NPLDNPLLTYVQDDEKTVEPEWYVPAL 830
Score = 37 (18.1 bits), Expect = 6.4e-29, Sum P(3) = 6.4e-29
Identities = 8/54 (14%), Positives = 27/54 (50%)
Query: 284 FLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQ 337
+L G K+ + Y +L ++Q+++ + +++ ++ W + R +++
Sbjct: 1123 YLLGMKIWSLTKEKYERLLREKQNKEAELQELLGKSAKDLWNADLDMFVREYEE 1176
>TAIR|locus:2076201 [details] [associations]
symbol:TOPII "AT3G23890" species:3702 "Arabidopsis
thaliana" [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006259 "DNA metabolic process" evidence=IEA;ISS] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IEA;ISS;IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS;IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS;IBA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0044774 "mitotic DNA integrity checkpoint"
evidence=IBA] [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0000226 "microtubule cytoskeleton organization"
evidence=RCA] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006260 "DNA replication" evidence=RCA]
[GO:0006270 "DNA replication initiation" evidence=RCA] [GO:0006275
"regulation of DNA replication" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0009909 "regulation of flower development" evidence=RCA]
[GO:0009957 "epidermal cell fate specification" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0016458
"gene silencing" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0034968 "histone lysine
methylation" evidence=RCA] [GO:0051225 "spindle assembly"
evidence=RCA] [GO:0051567 "histone H3-K9 methylation" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 EMBL:AP001297
GO:GO:0009330 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 eggNOG:COG0187 Gene3D:3.40.50.670
PROSITE:PS50880 KO:K03164 HOGENOM:HOG000216693 OMA:AKEYFQD
EMBL:L21015 EMBL:U12284 EMBL:U12285 EMBL:M84654 IPI:IPI00527804
PIR:S53598 RefSeq:NP_189031.1 UniGene:At.22343
ProteinModelPortal:P30182 SMR:P30182 STRING:P30182 PaxDb:P30182
PRIDE:P30182 EnsemblPlants:AT3G23890.1 GeneID:821972
KEGG:ath:AT3G23890 GeneFarm:2656 TAIR:At3g23890 InParanoid:P30182
PhylomeDB:P30182 ProtClustDB:PLN03237 Genevestigator:P30182
GermOnline:AT3G23890 Uniprot:P30182
Length = 1473
Score = 549 (198.3 bits), Expect = 1.4e-130, Sum P(5) = 1.4e-130
Identities = 117/193 (60%), Positives = 143/193 (74%)
Query: 440 KENMTLQKGS---FGSTCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRD 496
K+N L+K G V KL+DA +AG KNS CTLILTEGDSAKSLA++G V+G +
Sbjct: 420 KQNKDLKKSDGAKTGRVLVEKLDDAAEAGGKNSRLCTLILTEGDSAKSLALAGRSVLGNN 479
Query: 497 KYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIM 556
GVFPLRGKLLNVREA+ QI N EI NL KILGL+ + KY E++ +LRYG++MIM
Sbjct: 480 YCGVFPLRGKLLNVREASTTQITNNKEIENLKKILGLKQNMKY---ENVNSLRYGQMMIM 536
Query: 557 TDQDQDGSHIKGLIINFIHHNWPTLLRLP-FLEEFITPIIKATK--AREELSFYSLPEFE 613
TDQD DGSHIKGL+INFIH WP+LL++P FL EFITPI+KAT+ ++ LSFYS+PE+E
Sbjct: 537 TDQDHDGSHIKGLLINFIHSFWPSLLQVPSFLVEFITPIVKATRKGTKKVLSFYSMPEYE 596
Query: 614 EWKEE----TTNW 622
EWKE T W
Sbjct: 597 EWKESLKGNATGW 609
Score = 530 (191.6 bits), Expect = 1.4e-130, Sum P(5) = 1.4e-130
Identities = 107/196 (54%), Positives = 140/196 (71%)
Query: 165 VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKD 224
VP MIFGHLLTSSNY+D K TGGRNGYGAKL NIFS++F++ET+ + K +KQV+++
Sbjct: 137 VPEMIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFEN 196
Query: 225 NMSKVTSPEI-KSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAST-KDVK 282
NM K + P I K +++TK+TF PDL KF MT L+ D+V L+++R +D A K VK
Sbjct: 197 NMGKKSEPVITKCNKSENWTKVTFKPDLKKFNMTELEDDVVALMSKRVFDIAGCLGKSVK 256
Query: 283 VFLNGEKLPVKNFQDYVKLYTDRQDEDG--DPVKIIYENVNPRWEVAIAPSDRGFQQVSF 340
V LNG+++PVK+F DYV LY ++ DP+ + E VN RWEV ++ S+ FQQVSF
Sbjct: 257 VELNGKQIPVKSFTDYVDLYLSAANKSRTEDPLPRLTEKVNDRWEVCVSLSEGQFQQVSF 316
Query: 341 VNSIATTKGGRHVDAV 356
VNSIAT KGG HVD V
Sbjct: 317 VNSIATIKGGTHVDYV 332
Score = 453 (164.5 bits), Expect = 1.5e-122, Sum P(5) = 1.5e-122
Identities = 99/217 (45%), Positives = 137/217 (63%)
Query: 22 KKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYV 81
K + A ++E++YQKKSQLEHILLRPDTYIGS+E T+T+W+ E + M +R +TYV
Sbjct: 21 KSRAAAGGKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQTLWVY--EKDEMVQRPVTYV 78
Query: 82 PGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVP 141
PGLYKIFDEILVNA DNKQRD KM+ +++ ++ E N ISV N+G G+PV H++E ++VP
Sbjct: 79 PGLYKIFDEILVNAADNKQRDAKMDSVQVVIDVEQNLISVCNSGAGVPVEIHQEEGIYVP 138
Query: 142 TMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRN--GYGAKLCN 199
MIFGHLLTSSNY+D K TG +G LT+ + + G+ Y N
Sbjct: 139 EMIFGHLLTSSNYDDNVKKTTG--GRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFEN 196
Query: 200 IFSSKFV-VETSCSEYKKSFKQVWKDNMSKVTSPEIK 235
K V T C++ + K +K ++ K E++
Sbjct: 197 NMGKKSEPVITKCNKSENWTKVTFKPDLKKFNMTELE 233
Score = 299 (110.3 bits), Expect = 1.4e-130, Sum P(5) = 1.4e-130
Identities = 54/101 (53%), Positives = 70/101 (69%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEP WY+PIIP VLVNGAEGIGTGW T IPN+NPREIV N++R++ GE +PM PWY+
Sbjct: 824 RIEPTWYMPIIPTVLVNGAEGIGTGWSTFIPNYNPREIVANVRRLLNGESMVPMDPWYRG 883
Query: 719 FKGEIDYC----GDSRFVVNGEIAILDDDKLEITELQVGKW 755
FKG I+ G + + G +D+ + ITEL + +W
Sbjct: 884 FKGTIEKTASKEGGCTYTITGLYEEVDETTIRITELPIRRW 924
Score = 156 (60.0 bits), Expect = 1.9e-89, Sum P(5) = 1.9e-89
Identities = 33/83 (39%), Positives = 44/83 (53%)
Query: 413 LKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTCVPKLEDANDAGTKNSIDC 472
+K VKNH+W+F+N LI NP FDSQTKE +TL++ SFGS C + G ++
Sbjct: 353 VKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKKVGKSGVVEN 412
Query: 473 TLILTEGDSAKSLAVSGLGVVGR 495
L + K L S GR
Sbjct: 413 LLSWADFKQNKDLKKSDGAKTGR 435
Score = 127 (49.8 bits), Expect = 1.4e-130, Sum P(5) = 1.4e-130
Identities = 29/79 (36%), Positives = 43/79 (54%)
Query: 830 AAEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKA 889
A E E+ ++ P +YDYLL M SLT+E+ ELL RD + + +KK
Sbjct: 1095 AEEPEEILVDPESSSSYIPGSEYDYLLAMAIASLTIEKVEELLADRDKMIIAVADMKKTT 1154
Query: 890 PTDLWSDDLDAL-REKDKI 907
P LW DL++L +E +K+
Sbjct: 1155 PKSLWLSDLESLDKELEKL 1173
Score = 46 (21.3 bits), Expect = 3.8e-97, Sum P(3) = 3.8e-97
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 1906 EMYVDCSQLLQELSLTPLQ-----FASYLRETIAKETGCTCS-TG 1944
E+ + +LL S+ P+ F + +T +KE GCT + TG
Sbjct: 860 EIVANVRRLLNGESMVPMDPWYRGFKGTIEKTASKEGGCTYTITG 904
Score = 41 (19.5 bits), Expect = 1.4e-130, Sum P(5) = 1.4e-130
Identities = 13/60 (21%), Positives = 24/60 (40%)
Query: 1484 DNTEESKSEAVNSEESKSEAANPIES-KQTVKTKESKLETVNISAPKPQASSTKNASNED 1542
DN EE SE V S ++ + + + + K+ V + A+ ++ ED
Sbjct: 1409 DNKEEESSENVAGNSSSEKSGGDVSAISRPQRANRRKMTYVLSDSESESANDSEFDDIED 1468
>UNIPROTKB|F1P5H4 [details] [associations]
symbol:REV1 "DNA repair protein REV1" species:9031 "Gallus
gallus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0009411
"response to UV" evidence=IEA] [GO:0017125 "deoxycytidyl
transferase activity" evidence=IEA] [GO:0042276 "error-prone
translesion synthesis" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0009411 GO:GO:0000287
GO:GO:0003684 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003887 GO:GO:0042276 Gene3D:3.30.1490.100 SUPFAM:SSF100879
GO:GO:0017125 GeneTree:ENSGT00530000062942 OMA:YRFCRGL
EMBL:AADN02017696 EMBL:AADN02017697 IPI:IPI01017381
Ensembl:ENSGALT00000027069 Uniprot:F1P5H4
Length = 1255
Score = 598 (215.6 bits), Expect = 5.1e-124, Sum P(5) = 5.1e-124
Identities = 121/246 (49%), Positives = 167/246 (67%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E+ V + +S + + AVSCDE VD +++L E LTP + A+ +R+ I
Sbjct: 556 AYKEVAQTVYEIL----ASYTHNIEAVSCDEALVDITEILTETRLTPDELANAIRDEIKA 611
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T CT S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVG S+ KL
Sbjct: 612 QTKCTASVGMGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGRSMESKL 671
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ S+ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 672 ASLGIRTCGDLQCASMSKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 731
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR A AP E +K+ GHG+CD I
Sbjct: 732 RFTQPKEAEAFLLSLSEEIQRRLEAAGMKGKRLTLKIMVRKAGAPVEPAKYGGHGICDNI 791
Query: 2116 TKSSSL 2121
++ +L
Sbjct: 792 ARTVTL 797
Score = 289 (106.8 bits), Expect = 5.1e-124, Sum P(5) = 5.1e-124
Identities = 65/182 (35%), Positives = 101/182 (55%)
Query: 1495 NSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQ--AS-STKNASNEDFLGEFYNKS 1551
NS S S +N + T + T + S P P AS S S+ F+ +FY++S
Sbjct: 302 NSSSSSSLHSNTKINGAHHSTVQGPSSTKSTSVPTPSKAASLSVSKPSDCSFISDFYSRS 361
Query: 1552 RLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSE 1611
RLHH+ST ++VN L+ K+ GVF G E ++KWK + + + + S ++
Sbjct: 362 RLHHISTWKCELTEFVNSLQRKNSGVFPGREKLKKWKAGRSALKTDTGNVSVA---SSAK 418
Query: 1612 PEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKG-NSSKVREGVDRQAEFDIYRQRT 1670
P+ IMH+DMDCFFVSV IR+ P+L+ +PVAV +G + +R G + Q E+ Y+ +
Sbjct: 419 PQSCIMHVDMDCFFVSVAIRNRPDLKGKPVAVTSNRGAGKAPLRPGANPQLEWQYYQNKL 478
Query: 1671 MN 1672
+N
Sbjct: 479 LN 480
Score = 286 (105.7 bits), Expect = 5.1e-124, Sum P(5) = 5.1e-124
Identities = 65/119 (54%), Positives = 82/119 (68%)
Query: 1329 LEEQFELE-ANSDSRGG----IFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHG 1383
LE+QF + A R G IF GVAI+VNG+T PSA+EL+ LMMLHG
Sbjct: 30 LEDQFRSDSAIQHQRDGNSSSIFSGVAIYVNGFTD-----------PSADELRRLMMLHG 78
Query: 1384 GIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYLLYT 1441
G YH +Y S+TTHIIA+NLP+ KIK+LK G+K+++PEWIV+SI AG+LL H Y LYT
Sbjct: 79 GQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVVRPEWIVESIKAGRLLSHIPYQLYT 136
Score = 161 (61.7 bits), Expect = 5.1e-124, Sum P(5) = 5.1e-124
Identities = 34/76 (44%), Positives = 44/76 (57%)
Query: 1656 GVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYC 1715
GVD + + + R+ G+ NGMF G A K CPNL+ V YDF YKEV+
Sbjct: 506 GVD--CDLTVLSMAEIASCSYEARQAGIKNGMFFGQAKKLCPNLQAVSYDFNAYKEVAQT 563
Query: 1716 LYNLIASLTLNIEAVS 1731
+Y ++AS T NIEAVS
Sbjct: 564 VYEILASYTHNIEAVS 579
Score = 138 (53.6 bits), Expect = 5.1e-124, Sum P(5) = 5.1e-124
Identities = 30/74 (40%), Positives = 47/74 (63%)
Query: 2135 LLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRG 2194
++VR A AP E +K+ GHG+CD I ++ +L A I KE L + + +K++ ++RG
Sbjct: 768 IMVRKAGAPVEPAKYGGHGICDNIARTVTLDHATDSAKVIGKETLNMFHTMKLNISDMRG 827
Query: 2195 IGIQVSKLEHQSKT 2208
+GIQV +L SKT
Sbjct: 828 VGIQVQQLVPISKT 841
Score = 120 (47.3 bits), Expect = 2.6e-63, Sum P(5) = 2.6e-63
Identities = 24/93 (25%), Positives = 52/93 (55%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+L+EW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1163 LAGAVEFNDVKTLLKEWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVVKYMKRLMQ 1222
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKIV 1899
+VW A+ +L VQ ++ S K++
Sbjct: 1223 SSVESVWNMAFDFILDNVQVVLQQTYGSTLKVI 1255
Score = 90 (36.7 bits), Expect = 7.9e-81, Sum P(7) = 7.9e-81
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 1175 EGVNISAPKPQAS-STKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
+ ++ P AS S S+ F+ +FY++SRLHH+ST ++VN L
Sbjct: 330 KSTSVPTPSKAASLSVSKPSDCSFISDFYSRSRLHHISTWKCELTEFVNSL 380
Score = 72 (30.4 bits), Expect = 7.9e-81, Sum P(7) = 7.9e-81
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 1261 QYVNELREKHDGVFRGIEAIRKWK 1284
++VN L+ K+ GVF G E ++KWK
Sbjct: 375 EFVNSLQRKNSGVFPGREKLKKWK 398
Score = 53 (23.7 bits), Expect = 2.6e-63, Sum P(5) = 2.6e-63
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 1723 LTLNIEAVSL-YTNESFLNALPEDIRQEVLDDLSRQQ 1758
L L+IE S ++S L ALP D+R++V + QQ
Sbjct: 936 LNLSIEVPSASQLDKSVLEALPPDLREQVEQIYTIQQ 972
Score = 45 (20.9 bits), Expect = 2.6e-98, Sum P(6) = 2.6e-98
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 429 LIVNPTFDSQTKENMTLQKG-SFGSTCVPKLEDA 461
L+ + + TK++ ++QKG SF S C P EDA
Sbjct: 126 LLSHIPYQLYTKQS-SVQKGLSFNSICKP--EDA 156
Score = 39 (18.8 bits), Expect = 2.6e-98, Sum P(6) = 2.6e-98
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 1120 LPGWESNLRPSADKAESRKRTQTSQGTESEERKGHLRRWRRKEEEST 1166
+PG SN+ ++ K+ + ESE + W +EEE +
Sbjct: 157 MPG-PSNIAKDLNRVNHIKQCEM----ESEITPNGISSWNEEEEEDS 198
Score = 39 (18.8 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 2234 SNSTITPGPSNSTLPPGPSN--STLPPGPSNS 2263
SN+ I G +ST+ GPS+ ST P PS +
Sbjct: 311 SNTKIN-GAHHSTVQ-GPSSTKSTSVPTPSKA 340
Score = 38 (18.4 bits), Expect = 2.0e-54, Sum P(4) = 2.0e-54
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 1984 LPGVGHSLLFKLNSLGAQTCGD 2005
LPG HS++ L+ A+ C +
Sbjct: 853 LPGGSHSVIDLLHVQKAKKCSE 874
>UNIPROTKB|Q4KWZ7 [details] [associations]
symbol:REV1 "DNA repair protein REV1" species:9031 "Gallus
gallus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0019985
"translesion synthesis" evidence=TAS] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0002206 "gene conversion of
immunoglobulin genes" evidence=IMP] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005654 GO:GO:0000287
GO:GO:0003684 GO:GO:0006260 GO:GO:0006302 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 Reactome:REACT_115612 GO:GO:0003887
GO:GO:0019985 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
KO:K03515 EMBL:AY675169 IPI:IPI00571721 RefSeq:NP_001025982.2
UniGene:Gga.24037 ProteinModelPortal:Q4KWZ7 SMR:Q4KWZ7
STRING:Q4KWZ7 GeneID:418703 KEGG:gga:418703 CTD:51455
HOGENOM:HOG000154094 HOVERGEN:HBG054140 InParanoid:Q4KWZ7
OrthoDB:EOG4GF3DF NextBio:20821851 GO:GO:0002206 Uniprot:Q4KWZ7
Length = 1255
Score = 598 (215.6 bits), Expect = 5.1e-124, Sum P(5) = 5.1e-124
Identities = 121/246 (49%), Positives = 167/246 (67%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E+ V + +S + + AVSCDE VD +++L E LTP + A+ +R+ I
Sbjct: 556 AYKEVAQTVYEIL----ASYTHNIEAVSCDEALVDITEILTETRLTPDELANAIRDEIKA 611
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T CT S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVG S+ KL
Sbjct: 612 QTKCTASVGMGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGRSMESKL 671
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ S+ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 672 ASLGIRTCGDLQCASMSKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 731
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR A AP E +K+ GHG+CD I
Sbjct: 732 RFTQPKEAEAFLLSLSEEIQRRLEAAGMKGKRLTLKIMVRKAGAPVEPAKYGGHGICDNI 791
Query: 2116 TKSSSL 2121
++ +L
Sbjct: 792 ARTVTL 797
Score = 289 (106.8 bits), Expect = 5.1e-124, Sum P(5) = 5.1e-124
Identities = 65/182 (35%), Positives = 101/182 (55%)
Query: 1495 NSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQ--AS-STKNASNEDFLGEFYNKS 1551
NS S S +N + T + T + S P P AS S S+ F+ +FY++S
Sbjct: 302 NSSSSSSLHSNTKINGAHHSTVQGPSSTKSTSVPTPSKAASLSVSKPSDCSFISDFYSRS 361
Query: 1552 RLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSE 1611
RLHH+ST ++VN L+ K+ GVF G E ++KWK + + + + S ++
Sbjct: 362 RLHHISTWKCELTEFVNSLQRKNSGVFPGREKLKKWKAGRSALKTDTGNVSVA---SSAK 418
Query: 1612 PEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKG-NSSKVREGVDRQAEFDIYRQRT 1670
P+ IMH+DMDCFFVSV IR+ P+L+ +PVAV +G + +R G + Q E+ Y+ +
Sbjct: 419 PQSCIMHVDMDCFFVSVAIRNRPDLKGKPVAVTSNRGAGKAPLRPGANPQLEWQYYQNKL 478
Query: 1671 MN 1672
+N
Sbjct: 479 LN 480
Score = 286 (105.7 bits), Expect = 5.1e-124, Sum P(5) = 5.1e-124
Identities = 65/119 (54%), Positives = 82/119 (68%)
Query: 1329 LEEQFELE-ANSDSRGG----IFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHG 1383
LE+QF + A R G IF GVAI+VNG+T PSA+EL+ LMMLHG
Sbjct: 30 LEDQFRSDSAIQHQRDGNSSSIFSGVAIYVNGFTD-----------PSADELRRLMMLHG 78
Query: 1384 GIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYLLYT 1441
G YH +Y S+TTHIIA+NLP+ KIK+LK G+K+++PEWIV+SI AG+LL H Y LYT
Sbjct: 79 GQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVVRPEWIVESIKAGRLLSHIPYQLYT 136
Score = 161 (61.7 bits), Expect = 5.1e-124, Sum P(5) = 5.1e-124
Identities = 34/76 (44%), Positives = 44/76 (57%)
Query: 1656 GVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYC 1715
GVD + + + R+ G+ NGMF G A K CPNL+ V YDF YKEV+
Sbjct: 506 GVD--CDLTVLSMAEIASCSYEARQAGIKNGMFFGQAKKLCPNLQAVSYDFNAYKEVAQT 563
Query: 1716 LYNLIASLTLNIEAVS 1731
+Y ++AS T NIEAVS
Sbjct: 564 VYEILASYTHNIEAVS 579
Score = 138 (53.6 bits), Expect = 5.1e-124, Sum P(5) = 5.1e-124
Identities = 30/74 (40%), Positives = 47/74 (63%)
Query: 2135 LLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRG 2194
++VR A AP E +K+ GHG+CD I ++ +L A I KE L + + +K++ ++RG
Sbjct: 768 IMVRKAGAPVEPAKYGGHGICDNIARTVTLDHATDSAKVIGKETLNMFHTMKLNISDMRG 827
Query: 2195 IGIQVSKLEHQSKT 2208
+GIQV +L SKT
Sbjct: 828 VGIQVQQLVPISKT 841
Score = 120 (47.3 bits), Expect = 2.6e-63, Sum P(5) = 2.6e-63
Identities = 24/93 (25%), Positives = 52/93 (55%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+L+EW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1163 LAGAVEFNDVKTLLKEWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVVKYMKRLMQ 1222
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKIV 1899
+VW A+ +L VQ ++ S K++
Sbjct: 1223 SSVESVWNMAFDFILDNVQVVLQQTYGSTLKVI 1255
Score = 90 (36.7 bits), Expect = 7.9e-81, Sum P(7) = 7.9e-81
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 1175 EGVNISAPKPQAS-STKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
+ ++ P AS S S+ F+ +FY++SRLHH+ST ++VN L
Sbjct: 330 KSTSVPTPSKAASLSVSKPSDCSFISDFYSRSRLHHISTWKCELTEFVNSL 380
Score = 72 (30.4 bits), Expect = 7.9e-81, Sum P(7) = 7.9e-81
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 1261 QYVNELREKHDGVFRGIEAIRKWK 1284
++VN L+ K+ GVF G E ++KWK
Sbjct: 375 EFVNSLQRKNSGVFPGREKLKKWK 398
Score = 53 (23.7 bits), Expect = 2.6e-63, Sum P(5) = 2.6e-63
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 1723 LTLNIEAVSL-YTNESFLNALPEDIRQEVLDDLSRQQ 1758
L L+IE S ++S L ALP D+R++V + QQ
Sbjct: 936 LNLSIEVPSASQLDKSVLEALPPDLREQVEQIYTIQQ 972
Score = 45 (20.9 bits), Expect = 2.6e-98, Sum P(6) = 2.6e-98
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 429 LIVNPTFDSQTKENMTLQKG-SFGSTCVPKLEDA 461
L+ + + TK++ ++QKG SF S C P EDA
Sbjct: 126 LLSHIPYQLYTKQS-SVQKGLSFNSICKP--EDA 156
Score = 39 (18.8 bits), Expect = 2.6e-98, Sum P(6) = 2.6e-98
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 1120 LPGWESNLRPSADKAESRKRTQTSQGTESEERKGHLRRWRRKEEEST 1166
+PG SN+ ++ K+ + ESE + W +EEE +
Sbjct: 157 MPG-PSNIAKDLNRVNHIKQCEM----ESEITPNGISSWNEEEEEDS 198
Score = 39 (18.8 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 2234 SNSTITPGPSNSTLPPGPSN--STLPPGPSNS 2263
SN+ I G +ST+ GPS+ ST P PS +
Sbjct: 311 SNTKIN-GAHHSTVQ-GPSSTKSTSVPTPSKA 340
Score = 38 (18.4 bits), Expect = 2.0e-54, Sum P(4) = 2.0e-54
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 1984 LPGVGHSLLFKLNSLGAQTCGD 2005
LPG HS++ L+ A+ C +
Sbjct: 853 LPGGSHSVIDLLHVQKAKKCSE 874
>UNIPROTKB|Q7S9W8 [details] [associations]
symbol:NCU06338 "DNA topoisomerase 2" species:367110
"Neurospora crassa OR74A" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR017956
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00384 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 KO:K03164 HOGENOM:HOG000216693 OrthoDB:EOG4XPTPZ
EMBL:AABX02000026 RefSeq:XP_962372.2 UniGene:Ncr.23351
ProteinModelPortal:Q7S9W8 SMR:Q7S9W8 STRING:Q7S9W8
EnsemblFungi:EFNCRT00000006113 GeneID:3878536 KEGG:ncr:NCU06338
OMA:FFTLPQY Uniprot:Q7S9W8
Length = 1909
Score = 461 (167.3 bits), Expect = 1.4e-114, Sum P(6) = 1.4e-114
Identities = 100/202 (49%), Positives = 131/202 (64%)
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHK 516
KL +AN AG + S +CTLILTEGDSA+ LAV+G ++ ++ GVFPLRGK+LNVR+A+
Sbjct: 533 KLIEANYAGGRYSQECTLILTEGDSARGLAVAGRAILDPNRIGVFPLRGKMLNVRDASAD 592
Query: 517 QILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHH 576
QIL+N E+ N+ K LGL++ K YT D K LRYG LMIM DQD DGSHIKGL+INF
Sbjct: 593 QILKNKEVENIKKFLGLKHGKVYT---DTKDLRYGHLMIMADQDLDGSHIKGLLINFFEC 649
Query: 577 NWPTLLRLP-FLEEFITPIIKA-----TKAREELS-FYSLPEFEEWKE----ETTNWHTX 625
+P+LLR+P F +EFITP++K K + L F++LP++EEWKE E W
Sbjct: 650 QFPSLLRIPNFFQEFITPVVKVWQGPNPKKPQRLQGFFTLPQYEEWKEAHRNELRRWKYK 709
Query: 626 XXXXXXXXXXTGVLLFKMNLHK 647
L+ NL+K
Sbjct: 710 YLKGLGSSTTDDAQLYFTNLNK 731
Score = 448 (162.8 bits), Expect = 1.4e-114, Sum P(6) = 1.4e-114
Identities = 87/144 (60%), Positives = 106/144 (73%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREIT 79
+P KKT A K + E +YQK +QLEHIL RPDTYIGSVE + MW+ N+ T ME R+I+
Sbjct: 116 APAKKTGAAKTATE-MYQKLTQLEHILKRPDTYIGSVERSEQKMWVFNKATGLMENRQIS 174
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMF 139
+VPGLYKIFDEILVNA DN QRD M +K+T+N+E+ ISV NNGKGIPV H EK +
Sbjct: 175 FVPGLYKIFDEILVNAADNSQRDSSMTFLKVTINRESGEISVENNGKGIPVEIHGTEKCY 234
Query: 140 VPTMIFGHLLTSSNYNDEEDKVTG 163
VP +IFGHLL SN++D E K G
Sbjct: 235 VPELIFGHLLAGSNFDDNEKKTVG 258
Score = 242 (90.2 bits), Expect = 1.4e-114, Sum P(6) = 1.4e-114
Identities = 52/106 (49%), Positives = 73/106 (68%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKR-MIR-----GED-PL-P 711
IEP+ Y PIIPMVLVNGA+GIGTGW T IPN++P +IV+N+KR M R GE+ P P
Sbjct: 922 IEPKVYAPIIPMVLVNGADGIGTGWSTSIPNYHPLDIVENLKRRMGRDSSGDGEEKPFEP 981
Query: 712 MKPWYKNFKGEIDYCGDSRFVVNG--EIAILDDDKLEITELQVGKW 755
M PW++ +KG + G +RF NG E+ + +++++TEL + W
Sbjct: 982 MTPWFRGWKGTPEPDGPNRFKFNGIVEVNPQNPNEVDVTELPIRMW 1027
Score = 133 (51.9 bits), Expect = 1.4e-114, Sum P(6) = 1.4e-114
Identities = 26/45 (57%), Positives = 29/45 (64%)
Query: 410 GMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC 454
G LK VKN +IFINCLI NP F SQTKE +T + FGS C
Sbjct: 443 GHGLKTANVKNQFFIFINCLIDNPAFSSQTKEQLTTKPAKFGSKC 487
Score = 127 (49.8 bits), Expect = 1.4e-114, Sum P(6) = 1.4e-114
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 825 RQERQAAEGEDDEAGS-QTQEEEDP---DKDYDYLLGMTFWSLTMERKNELLKKRDDKMT 880
+ + + + D+E G+ ++EED +DYDYLL M WSLT ER ++L ++ K
Sbjct: 1182 KSDGRNVKSPDEELGAADNEDEEDAVGGARDYDYLLSMPIWSLTFERLDKLKQQIAAKKA 1241
Query: 881 ELNILKKKAPTDLWSDDLDA 900
E + L + DLW DLDA
Sbjct: 1242 EHDELDALSEKDLWCRDLDA 1261
Score = 50 (22.7 bits), Expect = 1.6e-106, Sum P(7) = 1.6e-106
Identities = 26/128 (20%), Positives = 53/128 (41%)
Query: 1175 EGVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQY--VNQLISLQQDK- 1231
+G N+ +P + + N ED +G + L + F++ + Q I+ ++ +
Sbjct: 1184 DGRNVKSPDEELGAADNEDEEDAVGGARDYDYLLSMPIWSLTFERLDKLKQQIAAKKAEH 1243
Query: 1232 -QLPAIQVISIXXXXXXXXXXXXTMGSMFKQYVN-ELREKHDGV-FRGIEAIRKWKTSLG 1288
+L A+ + + V E+R+K V ++G A+ + K S G
Sbjct: 1244 DELDALSEKDLWCRDLDAFTAEWEEQLRLEDEVRKEIRQKGRRVSYKG-GAVSRLKKSRG 1302
Query: 1289 ITEDEDLE 1296
+DED +
Sbjct: 1303 AKDDEDFD 1310
Score = 48 (22.0 bits), Expect = 5.5e-114, Sum P(8) = 5.5e-114
Identities = 15/61 (24%), Positives = 32/61 (52%)
Query: 1484 DNTEESKSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDF 1543
D+ + +A + + K E A P+ + +V+ K + ++ PK A S ++ S+++F
Sbjct: 1360 DDFDLLNKKAPAAAKKKDEDAEPVTTIASVRAKRA-----TVAKPKTYALSDED-SDDEF 1413
Query: 1544 L 1544
L
Sbjct: 1414 L 1414
Score = 45 (20.9 bits), Expect = 1.4e-114, Sum P(6) = 1.4e-114
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 1569 ELREKHDGV-FRGIEAIRKWKTSLGITEDEDLE 1600
E+R+K V ++G A+ + K S G +DED +
Sbjct: 1279 EIRQKGRRVSYKG-GAVSRLKKSRGAKDDEDFD 1310
Score = 45 (20.9 bits), Expect = 1.6e-106, Sum P(5) = 1.6e-106
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 810 DNELAKPQKTGPQLERQERQAAEGED---DEAGSQTQEEEDPD 849
D +++ +K P R+ AA+ + DE S+++ +D D
Sbjct: 1617 DKMVSEAEKPAPANPRKRAAAAKAKSFFIDEEDSESEASDDDD 1659
Score = 45 (20.9 bits), Expect = 2.1e-72, Sum P(8) = 2.1e-72
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 1 MSSDESD-FDPDVQQNGNGPSPKKKTPANKMSVEKIYQ 37
M ESD + P+V+ P+ KK + +K+ Q
Sbjct: 8 MFEGESDAYSPEVKPKAKKPAAKKAAAPKAPAAKKLTQ 45
Score = 44 (20.5 bits), Expect = 5.5e-114, Sum P(8) = 5.5e-114
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 1595 EDEDLEETFSDNPSPSEPEP 1614
EDED + F D +P EP P
Sbjct: 1497 EDEDSDVEFQD--APEEPIP 1514
Score = 43 (20.2 bits), Expect = 9.6e-106, Sum P(6) = 9.6e-106
Identities = 12/60 (20%), Positives = 28/60 (46%)
Query: 1486 TEESKSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLG 1545
+E +++ V S++ KS + ++ + K + N+ +P + + N ED +G
Sbjct: 1150 SEIIENKLVVSKKKKSVLVQELRERK-YEAFPPKSDGRNVKSPDEELGAADNEDEEDAVG 1208
Score = 41 (19.5 bits), Expect = 5.5e-114, Sum P(8) = 5.5e-114
Identities = 18/80 (22%), Positives = 40/80 (50%)
Query: 1133 KAESRKRTQTSQGTESEER-KGHLRRWRRKEEESTQTVQVE---LREGVNISAPKPQASS 1188
K + R + S+G + +E ++ + K +T++ + L + ++ PKP++++
Sbjct: 1290 KGGAVSRLKKSRGAKDDEDFDPGAKKAKAKAAPKAETIKTQQRFLEKFSGMAKPKPKSTA 1349
Query: 1189 -TKNA---SNEDFLGEFYNK 1204
T A S++DF + NK
Sbjct: 1350 FTDGADDLSDDDF--DLLNK 1367
Score = 40 (19.1 bits), Expect = 2.3e-113, Sum P(7) = 2.3e-113
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 1484 DNTEESKSEAVNSEESKSEAANPIESKQTVKTK 1516
D+ E + + SE K ANP + K K
Sbjct: 1609 DDLESDGDDKMVSEAEKPAPANPRKRAAAAKAK 1641
Score = 38 (18.4 bits), Expect = 8.7e-106, Sum P(5) = 8.7e-106
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 818 KTGPQLERQERQAAEG-EDDEAGSQ 841
K+ P+ + +A EG EDD G +
Sbjct: 1729 KSSPRKHSKTGEADEGSEDDSIGKK 1753
Score = 38 (18.4 bits), Expect = 2.0e-85, Sum P(7) = 2.0e-85
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 860 FWSLTMERKN-ELLKKRDDKMTELNILKKKA 889
F +L K +++ + + +M EL KKKA
Sbjct: 726 FTNLNKHLKEFDVMTREESEMFELAFSKKKA 756
Score = 38 (18.4 bits), Expect = 5.5e-33, Sum P(5) = 5.5e-33
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 174 LTSSNYNDEEDKVTGGRN 191
L +++ DEED V G R+
Sbjct: 1195 LGAADNEDEEDAVGGARD 1212
Score = 37 (18.1 bits), Expect = 4.7e-113, Sum P(7) = 4.7e-113
Identities = 7/18 (38%), Positives = 15/18 (83%)
Query: 1488 ESKSEAVNSEESKSEAAN 1505
++KS ++ E+S+SEA++
Sbjct: 1639 KAKSFFIDEEDSESEASD 1656
Score = 37 (18.1 bits), Expect = 8.0e-93, Sum P(8) = 8.0e-93
Identities = 5/15 (33%), Positives = 11/15 (73%)
Query: 710 LPMKPWYKNFKGEID 724
LP++ W +FK +++
Sbjct: 1022 LPIRMWTDDFKSKLE 1036
>UNIPROTKB|Q9UBZ9 [details] [associations]
symbol:REV1 "DNA repair protein REV1" species:9606 "Homo
sapiens" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017125 "deoxycytidyl transferase
activity" evidence=IEA] [GO:0042276 "error-prone translesion
synthesis" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0009411 "response to UV" evidence=IDA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] Reactome:REACT_216 InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0009411 GO:GO:0005654
GO:GO:0000287 GO:GO:0003684 GO:GO:0006260 EMBL:AC018690
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003887
GO:GO:0042276 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
PDB:3VU7 PDBsum:3VU7 GO:GO:0017125 PDB:2LSK PDBsum:2LSK KO:K03515
CTD:51455 HOGENOM:HOG000154094 HOVERGEN:HBG054140 OrthoDB:EOG4GF3DF
EMBL:AF151538 EMBL:AF206019 EMBL:AB047646 EMBL:AF357886
EMBL:AK002087 EMBL:AJ131720 IPI:IPI00008816 IPI:IPI00552928
IPI:IPI00552936 RefSeq:NP_001032961.1 RefSeq:NP_057400.1
UniGene:Hs.443077 PDB:2EBW PDB:2LSY PDB:3GQC PDBsum:2EBW
PDBsum:2LSY PDBsum:3GQC ProteinModelPortal:Q9UBZ9 SMR:Q9UBZ9
MINT:MINT-140323 STRING:Q9UBZ9 PhosphoSite:Q9UBZ9 DMDM:59798439
PaxDb:Q9UBZ9 PRIDE:Q9UBZ9 Ensembl:ENST00000258428
Ensembl:ENST00000393445 GeneID:51455 KEGG:hsa:51455 UCSC:uc002tac.3
UCSC:uc002tad.3 UCSC:uc002tae.1 GeneCards:GC02M100016
HGNC:HGNC:14060 HPA:HPA044534 HPA:HPA051036 MIM:606134
neXtProt:NX_Q9UBZ9 PharmGKB:PA162401120 InParanoid:Q9UBZ9
OMA:YRFCRGL PhylomeDB:Q9UBZ9 ChiTaRS:REV1 EvolutionaryTrace:Q9UBZ9
GenomeRNAi:51455 NextBio:55069 ArrayExpress:Q9UBZ9 Bgee:Q9UBZ9
CleanEx:HS_REV1 Genevestigator:Q9UBZ9 GermOnline:ENSG00000135945
Uniprot:Q9UBZ9
Length = 1251
Score = 599 (215.9 bits), Expect = 1.7e-113, Sum P(5) = 1.7e-113
Identities = 120/246 (48%), Positives = 167/246 (67%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E+ + + +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 545 AYKEVAQTLYETL----ASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEIKD 600
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVGHS+ KL
Sbjct: 601 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGHSMESKL 660
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 661 ASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 720
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE MKGK +TLK+MVR AP E +KF GHG+CD I
Sbjct: 721 RFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKPGAPVETAKFGGHGICDNI 780
Query: 2116 TKSSSL 2121
++ +L
Sbjct: 781 ARTVTL 786
Score = 295 (108.9 bits), Expect = 1.7e-113, Sum P(5) = 1.7e-113
Identities = 67/117 (57%), Positives = 81/117 (69%)
Query: 1329 LEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGI 1385
LEEQF +A G IF GVAI+VNGYT PSAEEL+ LMMLHGG
Sbjct: 29 LEEQFRSDAAMQKDGTSSTIFSGVAIYVNGYTD-----------PSAEELRKLMMLHGGQ 77
Query: 1386 YH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYLLYT 1441
YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+LL + Y LYT
Sbjct: 78 YHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRLLSYIPYQLYT 133
Score = 252 (93.8 bits), Expect = 1.7e-113, Sum P(5) = 1.7e-113
Identities = 59/165 (35%), Positives = 95/165 (57%)
Query: 1512 TVKTKESKLETVNISAPKPQASSTKNASNE-DFLGEFYNKSRLHHLSTMGSMFKQYVNEL 1570
TV+ S T ++S A S + ++ +F+ FY+ SRLHH+S ++VN L
Sbjct: 316 TVQGPSSTKSTSSVSTFSKAAPSVPSKPSDCNFISNFYSHSRLHHISMWKCELTEFVNTL 375
Query: 1571 REKHDGVFRGIEAIRKWKT---SLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVS 1627
+ + +G+F G E ++K KT +L +T+ D+ N SP + IMH+DMDCFFVS
Sbjct: 376 QRQSNGIFPGREKLKKMKTGRSALVVTDTGDMSVL---N-SPRH-QSCIMHVDMDCFFVS 430
Query: 1628 VGIRHHPELQDEPVAVAHGKGNS-SKVREGVDRQAEFDIYRQRTM 1671
VGIR+ P+L+ +PVAV +G + +R G + Q E+ Y+ + +
Sbjct: 431 VGIRNRPDLKGKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKIL 475
Score = 173 (66.0 bits), Expect = 1.7e-113, Sum P(5) = 1.7e-113
Identities = 33/53 (62%), Positives = 39/53 (73%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
R+ G+ NGMF GHA + CPNL+ VPYDF YKEV+ LY +AS T NIEAVS
Sbjct: 516 RQLGIKNGMFFGHAKQLCPNLQAVPYDFHAYKEVAQTLYETLASYTHNIEAVS 568
Score = 122 (48.0 bits), Expect = 8.4e-62, Sum P(5) = 8.4e-62
Identities = 25/68 (36%), Positives = 43/68 (63%)
Query: 2135 LLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRG 2194
++VR AP E +KF GHG+CD I ++ +L A I K +L + + +K++ ++RG
Sbjct: 757 IMVRKPGAPVETAKFGGHGICDNIARTVTLDQATDNAKIIGKAMLNMFHTMKLNISDMRG 816
Query: 2195 IGIQVSKL 2202
+GI V++L
Sbjct: 817 VGIHVNQL 824
Score = 122 (48.0 bits), Expect = 1.6e-61, Sum P(4) = 1.6e-61
Identities = 25/92 (27%), Positives = 52/92 (56%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+LREW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1159 LAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1218
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1219 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1250
Score = 70 (29.7 bits), Expect = 2.7e-70, Sum P(5) = 2.7e-70
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 1183 KPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
K S S+ +F+ FY+ SRLHH+S ++VN L
Sbjct: 334 KAAPSVPSKPSDCNFISNFYSHSRLHHISMWKCELTEFVNTL 375
Score = 62 (26.9 bits), Expect = 2.7e-70, Sum P(5) = 2.7e-70
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 1261 QYVNELREKHDGVFRGIEAIRKWKT---SLGITEDEDL 1295
++VN L+ + +G+F G E ++K KT +L +T+ D+
Sbjct: 370 EFVNTLQRQSNGIFPGREKLKKMKTGRSALVVTDTGDM 407
Score = 57 (25.1 bits), Expect = 3.9e-41, Sum P(5) = 3.9e-41
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 1723 LTLNIEAVS-LYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPL 1771
L L+IE S ++S L ALP D+R++V + + Q S EP+
Sbjct: 926 LNLSIEVPSPSQLDQSVLEALPPDLREQV-EQVCAVQQAESHGDKKKEPV 974
Score = 52 (23.4 bits), Expect = 1.7e-113, Sum P(5) = 1.7e-113
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 2212 IDTFFTNKGKPPDQLNNPRPGPSNSTITPG-PSNSTLPPGPSNSTLPPGPS 2261
ID F ++G P + +P S T G P S+L P+ PP P+
Sbjct: 1113 IDGFLKHEGPPAE-----KPLEELSASTSGVPGLSSLQSDPAGCVRPPAPN 1158
Score = 37 (18.1 bits), Expect = 5.0e-53, Sum P(5) = 5.0e-53
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 1957 KKAKPNGQFHLTPQIISDFMLNIPLSDLPG 1986
KK K G +++ +LN P LPG
Sbjct: 1075 KKKKTIGSPKRIQSPLNNKLLNSPAKTLPG 1104
>RGD|1306715 [details] [associations]
symbol:Rev1 "REV1, polymerase (DNA directed)" species:10116
"Rattus norvegicus" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0009411 "response to UV" evidence=IEA;ISO] [GO:0017125
"deoxycytidyl transferase activity" evidence=IEA;ISO] [GO:0042276
"error-prone translesion synthesis" evidence=IEA;ISO]
InterPro:IPR001126 InterPro:IPR012112 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573
PROSITE:PS50173 InterPro:IPR001357 Pfam:PF00533 RGD:1306715
GO:GO:0000287 GO:GO:0003684 GO:GO:0006281 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 EMBL:CH473965 GO:GO:0003887
Gene3D:3.30.1490.100 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
KO:K03515 CTD:51455 OrthoDB:EOG4GF3DF IPI:IPI00951348
RefSeq:NP_001101683.1 UniGene:Rn.94641 Ensembl:ENSRNOT00000067197
GeneID:316344 KEGG:rno:316344 UCSC:RGD:1306715 NextBio:670745
Uniprot:D3ZRU9
Length = 1119
Score = 595 (214.5 bits), Expect = 2.9e-113, Sum P(4) = 2.9e-113
Identities = 119/238 (50%), Positives = 159/238 (66%)
Query: 1884 VQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCST 1943
V A+ +S + + AVSCDE +D + +L E L+P +FA+ LR I +T C S
Sbjct: 547 VAQALYETLASYTHSIEAVSCDEALIDVTDILAETKLSPEEFAAALRMEIKNKTQCAASV 606
Query: 1944 GFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTC 2003
G GSN L AR+ATKKAKP+GQ+HL P + DF+ ++ LPGVG S+ KL SLG +TC
Sbjct: 607 GIGSNILLARMATKKAKPDGQYHLQPDEVDDFIRGQLVTSLPGVGRSMESKLASLGIKTC 666
Query: 2004 GDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEM 2063
GDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGIRF +E
Sbjct: 667 GDLQCLTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGIRFTQPREA 726
Query: 2064 ETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
E FL L+GE++ RLE MKGK +TLK+MVR AP E +KF GHG+CD I ++ +L
Sbjct: 727 EAFLLSLSGEIQSRLEAAGMKGKRLTLKIMVRKPGAPIETAKFGGHGICDNIARTVTL 784
Score = 297 (109.6 bits), Expect = 2.9e-113, Sum P(4) = 2.9e-113
Identities = 73/131 (55%), Positives = 86/131 (65%)
Query: 1329 LEEQFELEANSDSRG---GIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGI 1385
LEEQF +A G IF GVAI+VNGYT PSAEEL+ LMMLHGG
Sbjct: 29 LEEQFRSDAAKQKDGTASAIFSGVAIYVNGYTD-----------PSAEELRNLMMLHGGQ 77
Query: 1386 YH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYLLYTGTD 1444
YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+LL Y LYT
Sbjct: 78 YHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRLLSSVPYQLYT--- 133
Query: 1445 AKPLTKLLQKS 1455
KP T QKS
Sbjct: 134 -KPSTA--QKS 141
Score = 267 (99.0 bits), Expect = 2.9e-113, Sum P(4) = 2.9e-113
Identities = 61/164 (37%), Positives = 95/164 (57%)
Query: 1512 TVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELR 1571
TV+ S T ++ K S S+ F+ +FY++SRLHH+ST ++V+ L+
Sbjct: 315 TVQGPSSTKSTSALTLSKVAPSVPSKPSDCSFISDFYSRSRLHHISTWKCELTEFVSALQ 374
Query: 1572 EKHDGVFRGIEAIRKWKT---SLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSV 1628
+ GVF G E ++K KT SL +T+ D+ S SP P+ +MH+DMDCFFVSV
Sbjct: 375 RQRSGVFPGREKLKKVKTGRSSLVVTDTGDMS-VLS---SP-RPQSCVMHVDMDCFFVSV 429
Query: 1629 GIRHHPELQDEPVAVAHGKGNS-SKVREGVDRQAEFDIYRQRTM 1671
GIR+ P+L+ +PVAV +G + +R G + Q E+ Y+ + +
Sbjct: 430 GIRNRPDLKGKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKLL 473
Score = 157 (60.3 bits), Expect = 2.9e-113, Sum P(4) = 2.9e-113
Identities = 30/53 (56%), Positives = 38/53 (71%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
R+ G+ NGMF GHA + CPNL+ VPYDF +EV+ LY +AS T +IEAVS
Sbjct: 514 RQVGIKNGMFFGHAKQLCPNLQAVPYDFHACREVAQALYETLASYTHSIEAVS 566
Score = 125 (49.1 bits), Expect = 3.1e-62, Sum P(4) = 3.1e-62
Identities = 33/103 (32%), Positives = 56/103 (54%)
Query: 2100 PREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYIT 2159
PREA FL + ++ + + + L + ++VR AP E +KF GHG+CD I
Sbjct: 723 PREAEAFLLSLSGEIQSRLEAAGMKGKRLTLK---IMVRKPGAPIETAKFGGHGICDNIA 779
Query: 2160 KSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSKL 2202
++ +L A I K L + + +K++ ++RG+GIQV +L
Sbjct: 780 RTVTLDQATDSAKIIGKATLNMFHTMKLNISDMRGVGIQVHQL 822
Score = 75 (31.5 bits), Expect = 8.2e-69, Sum P(4) = 8.2e-69
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 1179 ISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
++ K S S+ F+ +FY++SRLHH+ST ++V+ L
Sbjct: 328 LTLSKVAPSVPSKPSDCSFISDFYSRSRLHHISTWKCELTEFVSAL 373
Score = 64 (27.6 bits), Expect = 8.2e-69, Sum P(4) = 8.2e-69
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 1261 QYVNELREKHDGVFRGIEAIRKWKT---SLGITEDEDLEETFSDNP 1303
++V+ L+ + GVF G E ++K KT SL +T+ D+ S P
Sbjct: 368 EFVSALQRQRSGVFPGREKLKKVKTGRSSLVVTDTGDMSVLSSPRP 413
Score = 60 (26.2 bits), Expect = 2.2e-44, Sum P(3) = 2.2e-44
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 1723 LTLNIEAVS-LYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPL 1771
L L+IE S ++S L ALP DIR++V + QQ R EP+
Sbjct: 924 LNLSIEVPSPSQIDQSVLEALPPDIREQVEQAYAAQQGE-PRGSKKKEPV 972
Score = 49 (22.3 bits), Expect = 5.6e-79, Sum P(3) = 5.6e-79
Identities = 28/106 (26%), Positives = 44/106 (41%)
Query: 1739 LNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPSPSPILDMSTS 1798
L++ E+ R E R S + +TT D +C+ H RT S SP L +T
Sbjct: 255 LDSTQEEKRAEKSSTDFRDCSRQHLQHSTTNA---DTLCSP-H---RTSSLSPSLHSNTK 307
Query: 1799 ILDTTTSHILSSNVSLQEMRTMLREWMCESQP-EPSDIEMFSEYLS 1843
I S + + S + + + S P +PSD S++ S
Sbjct: 308 INGAHHSTVQGPS-STKSTSALTLSKVAPSVPSKPSDCSFISDFYS 352
Score = 40 (19.1 bits), Expect = 2.3e-63, Sum P(3) = 2.3e-63
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 495 RDKYGVFPLRGKLLNVR 511
R + GVFP R KL V+
Sbjct: 375 RQRSGVFPGREKLKKVK 391
>DICTYBASE|DDB_G0279737 [details] [associations]
symbol:top2mt "DNA topoisomerase II" species:44689
"Dictyostelium discoideum" [GO:0006265 "DNA topological change"
evidence=IEA;IC;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0006259 "DNA metabolic process" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA]
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006261 "DNA-dependent
DNA replication" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 dictyBase:DDB_G0279737 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 EMBL:AAFI02000032 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
EMBL:D82024 PIR:T30577 RefSeq:XP_641531.1 ProteinModelPortal:P90520
STRING:P90520 EnsemblProtists:DDB0214907 GeneID:8622204
KEGG:ddi:DDB_G0279737 OMA:MQDRRER ProtClustDB:PTZ00108
Uniprot:P90520
Length = 1284
Score = 544 (196.6 bits), Expect = 1.8e-111, Sum P(6) = 1.8e-111
Identities = 103/164 (62%), Positives = 130/164 (79%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+ KL+DAN AG S +CTLI+TEGDSAKSLA++GL VVGR+ YGVFPLRGKLLNVR+
Sbjct: 543 ISKLDDANWAGGLKSKECTLIITEGDSAKSLALAGLSVVGRNSYGVFPLRGKLLNVRDVA 602
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
KQ+L N EINNL ILGL + Y T E M+ LRYGR+MIM DQD DGSHIKGL++NFI
Sbjct: 603 SKQLLSNEEINNLTTILGLSHKNSYDTDESMEDLRYGRVMIMADQDHDGSHIKGLVMNFI 662
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAR-EELSFYSLPEFEEWKE 617
H+ WP LL+ FL EF+TPIIKATK+ ++ SF+++ ++E+W+E
Sbjct: 663 HYFWPNLLKRGFLVEFVTPIIKATKSSTQKKSFFTIKDYEKWRE 706
Score = 409 (149.0 bits), Expect = 1.8e-111, Sum P(6) = 1.8e-111
Identities = 107/293 (36%), Positives = 155/293 (52%)
Query: 23 KKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVP 82
+KT K +E IYQKK+ EH+LLRPD+YIG++E I + MW+++ + E++ I
Sbjct: 80 EKTTTRK--IEDIYQKKTPTEHVLLRPDSYIGTIEKIEDDMWVLSNSMFNKEKKTIELNN 137
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHK--DEKM-F 139
+ E + P I + +++ + ++K D KM F
Sbjct: 138 DNNEKNVESTTTTTTKTNKKPLTYIHPIKATYIPGLLKIYDEIL-VNAADNKKRDSKMSF 196
Query: 140 VPTMIFGHLLTSSNYNDEE-------DKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNG 192
+ I + + S ND + V M+ G+L++ SN+ND E KV GGRNG
Sbjct: 197 IKVEINPNENSISIMNDGKGIPVVMHQTENCYVVEMVMGNLMSGSNFNDSELKVVGGRNG 256
Query: 193 YGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKS-GS-KDDFTKITFTPD 250
+GAKL NIFS +F VET K + Q W +NM + P I G + D+TKITF PD
Sbjct: 257 FGAKLTNIFSKEFTVETVDKSSGKKYFQRWSNNMGDRSEPIITPIGEGESDYTKITFKPD 316
Query: 251 LTKFKMTSL-DKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY 302
L KFK+ SL D +++ L+ RR YD A ++ V LNG++L NFQ YVKLY
Sbjct: 317 LEKFKIKSLWDDNILQLMERRLYDIAGCNTELMVTLNGKRLNY-NFQSYVKLY 368
Score = 361 (132.1 bits), Expect = 1.8e-106, Sum P(6) = 1.8e-106
Identities = 108/322 (33%), Positives = 167/322 (51%)
Query: 45 ILLRPDTYIGSVEPITETMWLMNRET-NHMERREITYVPGLYKIFDEILVNACDNKQRDP 103
I L D +VE T T N++ ++ + TY+PGL KI+DEILVNA DNK+RD
Sbjct: 133 IELNNDNNEKNVESTTTTTTKTNKKPLTYIHPIKATYIPGLLKIYDEILVNAADNKKRDS 192
Query: 104 KMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTG 163
KM+ IK+ +N N+IS+ N+GKGIPVV H+ E +V M+ G+L++ SN+ND E KV G
Sbjct: 193 KMSFIKVEINPNENSISIMNDGKGIPVVMHQTENCYVVEMVMGNLMSGSNFNDSELKVVG 252
Query: 164 VVPTMIFGHLLT---SSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQ 220
FG LT S + E + G+ + N+ + T E + + +
Sbjct: 253 --GRNGFGAKLTNIFSKEFTVETVDKSSGKKYFQRWSNNMGDRSEPIITPIGEGESDYTK 310
Query: 221 V-WKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKD-MVDLITRRA-YDAAAS 277
+ +K ++ K +IKS D+ ++ + + + + + MV L +R Y+ +
Sbjct: 311 ITFKPDLEKF---KIKSLWDDNILQLM---ERRLYDIAGCNTELMVTLNGKRLNYNFQSY 364
Query: 278 TKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRG-FQ 336
K + LN K +D + Y + E G+ ++PRW++ I S+ G F
Sbjct: 365 VKLYEHHLNNS---TKR-EDNEEQYREESFEFGE--------ISPRWKIGIGLSETGQFT 412
Query: 337 QVSFVNSIATTKGGRHVDAVVD 358
QVSFVNSI T KGG HV+ + D
Sbjct: 413 QVSFVNSINTVKGGTHVNFLAD 434
Score = 210 (79.0 bits), Expect = 1.8e-111, Sum P(6) = 1.8e-111
Identities = 45/99 (45%), Positives = 66/99 (66%)
Query: 660 IEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMK---PWY 716
I+P++YIPIIPM+LVNG+EGIG G T IP +P +I+D + M+R + + +K PWY
Sbjct: 931 IQPDYYIPIIPMLLVNGSEGIGVGMSTSIPLFSPIDIIDQL--MLRLNNQVALKKLIPWY 988
Query: 717 KNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
+ FKG I + + NG I ++ + LEITEL +G+W
Sbjct: 989 RGFKGTISPDRHT-YRTNGVIKLVGRN-LEITELPIGRW 1025
Score = 128 (50.1 bits), Expect = 1.8e-111, Sum P(6) = 1.8e-111
Identities = 25/60 (41%), Positives = 42/60 (70%)
Query: 411 MALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTCVPKLEDANDAG-TKNS 469
+ ++P +K+H+ +F+NCL+ NP+FDSQ+KE +T + FGST P++ ++ A KNS
Sbjct: 451 LEIRPMNIKHHLALFVNCLVDNPSFDSQSKETLTTKPMLFGST--PEIPESLLAQFVKNS 508
Score = 74 (31.1 bits), Expect = 1.8e-111, Sum P(6) = 1.8e-111
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 848 PDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALRE 903
P + Y +L ++ +T ER + L + + +E + P LW+ DL L+E
Sbjct: 1182 PPEVYQHLFSLSILDITKERIDNLTNQLTKRKSEHQSISSSDPKSLWTADLQQLKE 1237
Score = 46 (21.3 bits), Expect = 4.9e-39, Sum P(4) = 4.9e-39
Identities = 21/77 (27%), Positives = 35/77 (45%)
Query: 527 LVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDG-SHIK-GLIINFIHHNWPTLLRL 584
L+K L Q + TT++ ++ + G+L I QD ++ G I+ F N+ T
Sbjct: 1127 LLKSLDNQIKRLTTTIQFLEVIASGKLKIQGRSKQDLIKELESGEIVGF--ENFGTHPPE 1184
Query: 585 PFLEEFITPIIKATKAR 601
+ F I+ TK R
Sbjct: 1185 VYQHLFSLSILDITKER 1201
Score = 44 (20.5 bits), Expect = 3.8e-109, Sum P(5) = 3.8e-109
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 1439 LYTGTDAKPLTKLLQKSYFENTEAPCCSKXXXXXXXXXXXXXXXXDNTEESKSEAVNSE 1497
L+T D + L + L+KS E + P + +T +SK++ + S+
Sbjct: 1227 LWTA-DLQQLKEYLEKSDKEFQKKPLKTSSSSSFDVSSSSESAKLSSTRKSKTDKIKSK 1284
Score = 43 (20.2 bits), Expect = 4.2e-92, Sum P(4) = 4.2e-92
Identities = 16/71 (22%), Positives = 35/71 (49%)
Query: 1700 KIVPYDFEGYK-EVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQ 1758
K++P+ + G+K +S + + + + +L E + D + EVL+DL +
Sbjct: 983 KLIPW-YRGFKGTISPDRHTYRTNGVIKLVGRNLEITELPIGRWTSDYK-EVLNDLIDKD 1040
Query: 1759 SVLSREQNTTE 1769
+ S +++ TE
Sbjct: 1041 VIKSFQESNTE 1051
Score = 39 (18.8 bits), Expect = 1.3e-108, Sum P(5) = 1.3e-108
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 2035 DKELTFEHQRKSVSAEVNYGIRFQNNQ--EME 2064
DK++ Q + V++ I NNQ +ME
Sbjct: 1038 DKDVIKSFQESNTENSVHFTILLNNNQLEQME 1069
Score = 39 (18.8 bits), Expect = 8.8e-12, Sum P(4) = 8.8e-12
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 225 NMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSL-DKDM 263
N+ K I DD K+ F DL+ + + + DM
Sbjct: 738 NLDKHVIKFIWGDEADDLIKMAFAKDLSSLRQRWIKETDM 777
Score = 38 (18.4 bits), Expect = 1.8e-111, Sum P(6) = 1.8e-111
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 1510 KQTVKTKESKLETVNISAPKPQASSTKNASNE 1541
K+ +KT S V+ S+ + SST+ + +
Sbjct: 1248 KKPLKTSSSSSFDVSSSSESAKLSSTRKSKTD 1279
>MGI|MGI:1929074 [details] [associations]
symbol:Rev1 "REV1 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0017125
"deoxycytidyl transferase activity" evidence=IDA] [GO:0042276
"error-prone translesion synthesis" evidence=IDA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 MGI:MGI:1929074 Pfam:PF00533 GO:GO:0005634
GO:GO:0009411 GO:GO:0000287 GO:GO:0003684 GO:GO:0006260
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003887
GO:GO:0042276 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
PDB:4FJO PDBsum:4FJO GO:GO:0017125 GeneTree:ENSGT00530000062942
PDB:2LSJ PDBsum:2LSJ KO:K03515 CTD:51455 HOGENOM:HOG000154094
HOVERGEN:HBG054140 OrthoDB:EOG4GF3DF OMA:YRFCRGL ChiTaRS:REV1
EMBL:AB057418 EMBL:AF179302 EMBL:BC058093 IPI:IPI00396706
RefSeq:NP_062516.2 UniGene:Mm.389103 PDB:2LSG PDBsum:2LSG
ProteinModelPortal:Q920Q2 SMR:Q920Q2 DIP:DIP-41772N IntAct:Q920Q2
STRING:Q920Q2 PhosphoSite:Q920Q2 PRIDE:Q920Q2
Ensembl:ENSMUST00000027251 GeneID:56210 KEGG:mmu:56210
UCSC:uc007asp.1 InParanoid:Q920Q2 NextBio:312050 Bgee:Q920Q2
CleanEx:MM_REV1 Genevestigator:Q920Q2 GermOnline:ENSMUSG00000026082
Uniprot:Q920Q2
Length = 1249
Score = 591 (213.1 bits), Expect = 2.8e-111, Sum P(4) = 2.8e-111
Identities = 119/238 (50%), Positives = 160/238 (67%)
Query: 1884 VQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCST 1943
V AM +S + + AVSCDE +D + +L E L+P +FA+ LR I +T C S
Sbjct: 547 VAQAMYETLASYTHSIEAVSCDEALIDVTDILAETKLSPEEFAAALRIEIKDKTKCAASV 606
Query: 1944 GFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTC 2003
G GSN L AR+ATKKAKP+GQ+HL P + DF+ +++LPGVG S+ KL SLG +TC
Sbjct: 607 GIGSNILLARMATKKAKPDGQYHLQPDEVDDFIRGQLVTNLPGVGRSMESKLASLGIKTC 666
Query: 2004 GDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEM 2063
GDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGIRF +E
Sbjct: 667 GDLQCLTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGIRFTQPKEA 726
Query: 2064 ETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
E FL L+ E+++RLE MKGK +TLK+MVR AP E +KF GHG+CD I ++ +L
Sbjct: 727 EAFLLSLSEEIQRRLEAAGMKGKRLTLKIMVRKPGAPIETAKFGGHGICDNIARTVTL 784
Score = 299 (110.3 bits), Expect = 2.8e-111, Sum P(4) = 2.8e-111
Identities = 68/121 (56%), Positives = 82/121 (67%)
Query: 1329 LEEQFELEANSDSRG---GIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGI 1385
LEEQF +A + G IF GVAI+VNGYT PSAEEL+ LMMLHGG
Sbjct: 29 LEEQFRTDAANQKDGTASAIFSGVAIYVNGYTD-----------PSAEELRNLMMLHGGQ 77
Query: 1386 YH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYLLYTGTD 1444
YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+LL Y LYT
Sbjct: 78 YHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRLLSSAPYQLYTKPS 136
Query: 1445 A 1445
A
Sbjct: 137 A 137
Score = 264 (98.0 bits), Expect = 2.8e-111, Sum P(4) = 2.8e-111
Identities = 61/164 (37%), Positives = 95/164 (57%)
Query: 1512 TVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELR 1571
TV+ S T ++ K S S+ +F+ +FY++SRLHH+ST ++VN L+
Sbjct: 315 TVQGPSSTKSTSVLTLSKVAPSVPSKPSDCNFISDFYSRSRLHHISTWKCELTEFVNTLQ 374
Query: 1572 EKHDGVFRGIEAIRKWKT---SLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSV 1628
+ G+F G E ++K KT SL +T+ T S SP + +MH+DMDCFFVSV
Sbjct: 375 RQSSGIFPGREKLKKVKTGRSSLVVTDTG----TMSVLSSPRH-QSCVMHVDMDCFFVSV 429
Query: 1629 GIRHHPELQDEPVAVAHGKGN-SSKVREGVDRQAEFDIYRQRTM 1671
GIR+ P+L+ +PVAV +G ++ +R G + Q E+ Y+ R +
Sbjct: 430 GIRNRPDLKGKPVAVTSNRGTGTAPLRPGANPQLEWQYYQNRAL 473
Score = 149 (57.5 bits), Expect = 2.8e-111, Sum P(4) = 2.8e-111
Identities = 28/53 (52%), Positives = 38/53 (71%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
R+ G+ NGMF G+A + CPNL+ VPYDF +EV+ +Y +AS T +IEAVS
Sbjct: 514 RQVGIKNGMFFGYAKQLCPNLQAVPYDFHACREVAQAMYETLASYTHSIEAVS 566
Score = 132 (51.5 bits), Expect = 9.4e-62, Sum P(4) = 9.4e-62
Identities = 28/77 (36%), Positives = 47/77 (61%)
Query: 2135 LLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRG 2194
++VR AP E +KF GHG+CD I ++ +L A I K L + + +K++ ++RG
Sbjct: 755 IMVRKPGAPIETAKFGGHGICDNIARTVTLDQATDSAKIIGKATLNMFHTMKLNISDMRG 814
Query: 2195 IGIQVSKLEHQSKTLAT 2211
+GIQV++L + L+T
Sbjct: 815 VGIQVNQLVPANSNLST 831
Score = 118 (46.6 bits), Expect = 2.7e-60, Sum P(4) = 2.7e-60
Identities = 24/92 (26%), Positives = 51/92 (55%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+L+EW+ S P DI Y ++L+EE+ L + +++++++R +
Sbjct: 1157 LAGAVEFSDVKTLLKEWITTISDPMEEDILQVVRYCTDLIEEKDLEKLDLVIKYMKRLMQ 1216
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1217 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1248
Score = 86 (35.3 bits), Expect = 2.3e-67, Sum P(4) = 2.3e-67
Identities = 28/96 (29%), Positives = 43/96 (44%)
Query: 1130 SADKAESRKRTQT-SQGTESEERKGHLRRWRRKEEESTQTVQVELREGVNISAPKPQASS 1188
SAD S RT + S S + + ST++ V + +S P S
Sbjct: 285 SADALRSPHRTNSLSPSLHSNTKINGAHHSTVQGPSSTKSTSV-----LTLSKVAPSVPS 339
Query: 1189 TKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
+ N F+ +FY++SRLHH+ST ++VN L
Sbjct: 340 KPSDCN--FISDFYSRSRLHHISTWKCELTEFVNTL 373
Score = 57 (25.1 bits), Expect = 2.3e-67, Sum P(4) = 2.3e-67
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 1261 QYVNELREKHDGVFRGIEAIRKWKT---SLGITE 1291
++VN L+ + G+F G E ++K KT SL +T+
Sbjct: 368 EFVNTLQRQSSGIFPGREKLKKVKTGRSSLVVTD 401
Score = 52 (23.4 bits), Expect = 3.2e-50, Sum P(4) = 3.2e-50
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 1723 LTLNIEAVS-LYTNESFLNALPEDIRQEVLDDLSRQQ 1758
L L+IE S ++S L ALP D+R+++ + QQ
Sbjct: 926 LNLSIEVPSPSQIDQSVLEALPLDLREQIEQVCAAQQ 962
Score = 43 (20.2 bits), Expect = 1.1e-77, Sum P(3) = 1.1e-77
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 1785 RTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQP-EPSDIEMFSEYLS 1843
RT S SP L +T I S + + S + + + S P +PSD S++ S
Sbjct: 294 RTNSLSPSLHSNTKINGAHHSTVQGPS-STKSTSVLTLSKVAPSVPSKPSDCNFISDFYS 352
Score = 39 (18.8 bits), Expect = 1.6e-61, Sum P(3) = 1.6e-61
Identities = 25/94 (26%), Positives = 35/94 (37%)
Query: 431 VNPTFDSQTKEN----MTLQ-KGSFGSTCVPKLEDANDAGTKNSIDCTLI--------LT 477
++P+ S TK N T+Q S ST V L + DC I L
Sbjct: 298 LSPSLHSNTKINGAHHSTVQGPSSTKSTSVLTLSKVAPSVPSKPSDCNFISDFYSRSRLH 357
Query: 478 EGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVR 511
+ K + + R G+FP R KL V+
Sbjct: 358 HISTWKCELTEFVNTLQRQSSGIFPGREKLKKVK 391
Score = 39 (18.8 bits), Expect = 6.3e-20, Sum P(2) = 6.3e-20
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 2199 VSKLEHQSKTLATIDT-FFTNKGKPPDQLNNPRPGPSNSTITPGPSNS 2245
V L+H +++ + + TN P N G +ST+ GPS++
Sbjct: 276 VQHLQHSTRSADALRSPHRTNSLSPSLHSNTKINGAHHSTVQ-GPSST 322
Score = 37 (18.1 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 2221 KPPDQLNNPRPGPSN 2235
KP D P PGPSN
Sbjct: 149 KPED----PGPGPSN 159
>UNIPROTKB|E2RPL9 [details] [associations]
symbol:REV1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042276 "error-prone translesion synthesis"
evidence=IEA] [GO:0017125 "deoxycytidyl transferase activity"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0009411 GO:GO:0000287
GO:GO:0003684 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003887 GO:GO:0042276 Gene3D:3.30.1490.100 SUPFAM:SSF100879
GO:GO:0017125 GeneTree:ENSGT00530000062942 KO:K03515 CTD:51455
OMA:YRFCRGL EMBL:AAEX03007444 RefSeq:XP_538458.3
Ensembl:ENSCAFT00000003562 GeneID:481337 KEGG:cfa:481337
Uniprot:E2RPL9
Length = 1253
Score = 604 (217.7 bits), Expect = 1.3e-110, Sum P(5) = 1.3e-110
Identities = 122/246 (49%), Positives = 168/246 (68%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E V M +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 545 AYKE----VARTMYETLASYTHNIEAVSCDEALVDITEILAETRLTPDEFANAVRTEIKD 600
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +S+LPGVG S+ KL
Sbjct: 601 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVSNLPGVGRSMESKL 660
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
NSLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKS+SAE+NYGI
Sbjct: 661 NSLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSISAEINYGI 720
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE +KGK +TLK+MVR + AP E +KF GHG+CD I
Sbjct: 721 RFTQPKEAEAFLLNLSEEIQRRLEAAHVKGKRLTLKVMVRKSGAPVETAKFGGHGICDNI 780
Query: 2116 TKSSSL 2121
T++ +L
Sbjct: 781 TRTVTL 786
Score = 287 (106.1 bits), Expect = 1.3e-110, Sum P(5) = 1.3e-110
Identities = 66/117 (56%), Positives = 80/117 (68%)
Query: 1329 LEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGI 1385
LEEQF +A G IF GVAI+VNGYT PSAEEL+ LMMLHGG
Sbjct: 29 LEEQFRSDATIQKDGTSSTIFSGVAIYVNGYTD-----------PSAEELRKLMMLHGGQ 77
Query: 1386 YH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYLLYT 1441
YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+LL Y LY+
Sbjct: 78 YHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRLLSCIPYQLYS 133
Score = 247 (92.0 bits), Expect = 1.3e-110, Sum P(5) = 1.3e-110
Identities = 62/189 (32%), Positives = 97/189 (51%)
Query: 1485 NTEESKSEAVNSEESKSEAANPIESK-QTVKTKESKLETVNISAPKPQASSTKNASNEDF 1543
N + S +++S S ++ S Q + +S +S P S + N F
Sbjct: 291 NPHRTNSFSLSSLHSNTKINGAHHSAVQGPSSTKSTSSVPTLSKAAPLVPSKPSDCN--F 348
Query: 1544 LGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETF 1603
+ +FY++SRLHH+S ++VN L+ + GVF G E ++K KT D
Sbjct: 349 ISDFYSRSRLHHISMWKCELTEFVNTLQRQSSGVFPGREKLKKMKTGRSTLVVTDTGN-M 407
Query: 1604 SDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS-SKVREGVDRQAE 1662
S SP + IMH+DMDCFFVSVGIR+ P+L+ +PVAV +G + +R G + Q E
Sbjct: 408 SVLSSPRH-QSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLRPGANPQLE 466
Query: 1663 FDIYRQRTM 1671
+ Y+ + +
Sbjct: 467 WQYYQNKIL 475
Score = 162 (62.1 bits), Expect = 1.3e-110, Sum P(5) = 1.3e-110
Identities = 31/53 (58%), Positives = 38/53 (71%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
R+ G+ NGMF G A + CPNL+ VPYDF YKEV+ +Y +AS T NIEAVS
Sbjct: 516 RQVGIKNGMFFGQAKQLCPNLQAVPYDFHAYKEVARTMYETLASYTHNIEAVS 568
Score = 127 (49.8 bits), Expect = 7.3e-59, Sum P(5) = 7.3e-59
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 2135 LLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRG 2194
++VR + AP E +KF GHG+CD IT++ +L A I K L + + +K++ ++RG
Sbjct: 757 VMVRKSGAPVETAKFGGHGICDNITRTVTLDQATDSAKIIGKATLNMFHTMKLNISDMRG 816
Query: 2195 IGIQVSKL 2202
+GI V++L
Sbjct: 817 VGIHVNQL 824
Score = 119 (46.9 bits), Expect = 1.1e-58, Sum P(4) = 1.1e-58
Identities = 24/92 (26%), Positives = 52/92 (56%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+L+EW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1161 LAGAVEFSDVKTLLKEWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1220
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1221 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1252
Score = 73 (30.8 bits), Expect = 2.5e-67, Sum P(4) = 2.5e-67
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 1193 SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
S+ +F+ +FY++SRLHH+S ++VN L
Sbjct: 344 SDCNFISDFYSRSRLHHISMWKCELTEFVNTL 375
Score = 58 (25.5 bits), Expect = 9.2e-66, Sum P(4) = 9.2e-66
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 1261 QYVNELREKHDGVFRGIEAIRKWKT 1285
++VN L+ + GVF G E ++K KT
Sbjct: 370 EFVNTLQRQSSGVFPGREKLKKMKT 394
Score = 57 (25.1 bits), Expect = 6.4e-40, Sum P(4) = 6.4e-40
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 1718 NLIASLTLNIEAVS-LYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPL 1771
+L + + L+IE S ++S L ALP D+R++V + + QQ L ++ EP+
Sbjct: 923 SLKSRINLSIEVPSPSQLDQSVLEALPPDLREQV-EQVCVQQGELHGDKRK-EPV 975
Score = 43 (20.2 bits), Expect = 1.3e-110, Sum P(5) = 1.3e-110
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 2221 KPPDQLNNPRPG-PSNSTITPGPSNSTLPPGPS 2252
KP +L+ G P S + P P PP P+
Sbjct: 1128 KPLGELSGSTSGVPGLSGLQPEPVGCGRPPAPN 1160
Score = 37 (18.1 bits), Expect = 5.6e-110, Sum P(5) = 5.6e-110
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 2239 TPG-PSNSTLPPGPSNSTLPPGPS 2261
T G P S L P P PP P+
Sbjct: 1137 TSGVPGLSGLQPEPVGCGRPPAPN 1160
>UNIPROTKB|F1STE9 [details] [associations]
symbol:REV1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042276 "error-prone translesion synthesis"
evidence=IEA] [GO:0017125 "deoxycytidyl transferase activity"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0009411 GO:GO:0000287
GO:GO:0003684 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003887 GO:GO:0042276 Gene3D:3.30.1490.100 SUPFAM:SSF100879
GO:GO:0017125 GeneTree:ENSGT00530000062942 OMA:YRFCRGL
EMBL:FP326722 EMBL:CU972417 EMBL:CU694748
Ensembl:ENSSSCT00000008958 Uniprot:F1STE9
Length = 1253
Score = 585 (211.0 bits), Expect = 2.7e-107, Sum P(5) = 2.7e-107
Identities = 120/246 (48%), Positives = 165/246 (67%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E V M +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 544 AYKE----VARTMYETLASYTHNIEAVSCDEALVDITEILAETRLTPDEFANAVRMEIKD 599
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVG S+ KL
Sbjct: 600 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGRSMESKL 659
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G K G LY+ CRG DD+ + E +RKSVSAE+NYGI
Sbjct: 660 MSLGIRTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 719
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE +KGK +TLK+MVR AP E +KF GHG+CD I
Sbjct: 720 RFTQPKEAEAFLLSLSEEIQRRLETAGVKGKRLTLKIMVRKPGAPVETAKFGGHGICDTI 779
Query: 2116 TKSSSL 2121
++ +L
Sbjct: 780 CRTVTL 785
Score = 287 (106.1 bits), Expect = 2.7e-107, Sum P(5) = 2.7e-107
Identities = 65/117 (55%), Positives = 81/117 (69%)
Query: 1329 LEEQFELEANSDSRGG---IFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGI 1385
LE+QF +A G IF GVAI+VNGYT PSAEEL+ LMMLHGG
Sbjct: 28 LEQQFRSDAAIQKDGTTSTIFSGVAIYVNGYTD-----------PSAEELRKLMMLHGGQ 76
Query: 1386 YH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYLLYT 1441
YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+PEWIV+SI AG+LL + Y LY+
Sbjct: 77 YHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRLLSYIPYQLYS 132
Score = 248 (92.4 bits), Expect = 2.7e-107, Sum P(5) = 2.7e-107
Identities = 59/167 (35%), Positives = 90/167 (53%)
Query: 1512 TVKTKESKLETVNISAPKPQASSTK-NASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNEL 1570
TV+ S T ++ P A S S+ +F+ +FY++SRLHH+S ++VN L
Sbjct: 313 TVQGPSSTRSTSSVPMPSKAAPSVPPRPSDCNFISDFYSRSRLHHISMWKCELTEFVNTL 372
Query: 1571 REKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGI 1630
+ + G+F G E ++K KT D S SP + IMH+DMDCFFVSVGI
Sbjct: 373 QRQSSGIFPGREKLKKMKTGRSALVVTDTGN-MSVLSSPRH-QSCIMHVDMDCFFVSVGI 430
Query: 1631 RHHPELQDEPVAVAHGKGNS-SKVREGVDRQAEFDIYRQRTMN-RMG 1675
R+ P+L+ +PVAV +G + + G + Q E+ Y+ + + R G
Sbjct: 431 RNRPDLKGKPVAVTSNRGTGRAPLCPGANPQLEWQYYQNKLLKGRAG 477
Score = 154 (59.3 bits), Expect = 2.7e-107, Sum P(5) = 2.7e-107
Identities = 29/53 (54%), Positives = 38/53 (71%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
R+ G+ NGM+ G A + CP+L+ VPYDF YKEV+ +Y +AS T NIEAVS
Sbjct: 515 RQVGIRNGMYFGQAKQLCPSLQAVPYDFHAYKEVARTMYETLASYTHNIEAVS 567
Score = 122 (48.0 bits), Expect = 2.9e-58, Sum P(4) = 2.9e-58
Identities = 25/92 (27%), Positives = 52/92 (56%)
Query: 1808 LSSNVSLQEMRTMLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVG 1866
L+ V +++T+LREW+ S P DI +Y ++L+EE+ L + +++++++R +
Sbjct: 1161 LAGAVEFSDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQ 1220
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKI 1898
+ +VW A+ +L VQ ++ S K+
Sbjct: 1221 QSVESVWNMAFDFILDNVQVVLQQTYGSTLKV 1252
Score = 119 (46.9 bits), Expect = 6.6e-57, Sum P(5) = 6.6e-57
Identities = 25/68 (36%), Positives = 42/68 (61%)
Query: 2135 LLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRG 2194
++VR AP E +KF GHG+CD I ++ +L A I K L + + +K++ ++RG
Sbjct: 756 IMVRKPGAPVETAKFGGHGICDTICRTVTLDQATDSAKVIGKATLNMFHAMKLNISDMRG 815
Query: 2195 IGIQVSKL 2202
+GI V++L
Sbjct: 816 VGILVNQL 823
Score = 77 (32.2 bits), Expect = 1.6e-65, Sum P(5) = 1.6e-65
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 1174 REGVNISAPKPQASSTK-NASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
R ++ P A S S+ +F+ +FY++SRLHH+S ++VN L
Sbjct: 321 RSTSSVPMPSKAAPSVPPRPSDCNFISDFYSRSRLHHISMWKCELTEFVNTL 372
Score = 57 (25.1 bits), Expect = 1.6e-65, Sum P(5) = 1.6e-65
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 1261 QYVNELREKHDGVFRGIEAIRKWKT 1285
++VN L+ + G+F G E ++K KT
Sbjct: 367 EFVNTLQRQSSGIFPGREKLKKMKT 391
Score = 51 (23.0 bits), Expect = 5.4e-39, Sum P(4) = 5.4e-39
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 1718 NLIASLTLNIEAVS-LYTNESFLNALPEDIRQEV 1750
+L + L L+IE S + S L ALP D+R++V
Sbjct: 922 SLKSRLNLSIEVPSPSQLDPSVLEALPPDLREQV 955
Score = 41 (19.5 bits), Expect = 7.1e-49, Sum P(5) = 7.1e-49
Identities = 20/84 (23%), Positives = 37/84 (44%)
Query: 1884 VQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCST 1943
VQS+ H P S ++ + + + +E+ L L L + A T CT
Sbjct: 839 VQSS--HFPGSSHSVLDLLQVQKTKKPPEEEHKEVFLAALD----LEISSASST-CTFLP 891
Query: 1944 GFGSNKLQ-ARLATKKAKPNGQFH 1966
++ A AT +A+P+G+++
Sbjct: 892 SLSAHPTSGASAATSRAEPSGKWN 915
Score = 40 (19.1 bits), Expect = 9.0e-49, Sum P(5) = 9.0e-49
Identities = 30/107 (28%), Positives = 46/107 (42%)
Query: 1750 VLDDLSRQQSVLSREQNTTEPL--AQDI-ICADSHTLVRTPS----PSPILDMSTSILDT 1802
VLD L Q++ E+ E A D+ I + S T PS P+ +TS +
Sbjct: 851 VLDLLQVQKTKKPPEEEHKEVFLAALDLEISSASSTCTFLPSLSAHPTSGASAATSRAEP 910
Query: 1803 TTS-HILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEE 1848
+ + L S +SL+ + E SQ +PS +E L VE+
Sbjct: 911 SGKWNGLRSPLSLKSRLNLSIEVPSPSQLDPSVLEALPPDLREQVEQ 957
Score = 39 (18.8 bits), Expect = 2.7e-107, Sum P(5) = 2.7e-107
Identities = 15/51 (29%), Positives = 21/51 (41%)
Query: 2212 IDTFFTNKGKPPDQLNNPRPGPSNSTITPGPSNST-LPPGPSNSTLPPGPS 2261
ID F ++G ++ P S T G + L P PS PP P+
Sbjct: 1115 IDGFLKHEGPASEE-----PLGDLSASTSGVAGLCGLQPDPSGWVRPPAPN 1160
Score = 37 (18.1 bits), Expect = 4.0e-17, Sum P(3) = 4.0e-17
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 1633 HPELQDEPVAVAHGKGNSSK 1652
+P LQ +P AV K N K
Sbjct: 1060 NPLLQLKPAAVREKKRNKKK 1079
>UNIPROTKB|F1N787 [details] [associations]
symbol:REV1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042276 "error-prone translesion synthesis"
evidence=IEA] [GO:0017125 "deoxycytidyl transferase activity"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 GO:GO:0009411 GO:GO:0000287 GO:GO:0003684
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003887
GO:GO:0042276 Gene3D:3.30.1490.100 SUPFAM:SSF100879 GO:GO:0017125
GeneTree:ENSGT00530000062942 OMA:YRFCRGL EMBL:DAAA02030163
EMBL:DAAA02030164 EMBL:DAAA02030165 EMBL:DAAA02030166
EMBL:DAAA02030167 EMBL:DAAA02030168 IPI:IPI00731687
Ensembl:ENSBTAT00000061518 Uniprot:F1N787
Length = 1202
Score = 597 (215.2 bits), Expect = 1.4e-105, Sum P(5) = 1.4e-105
Identities = 120/246 (48%), Positives = 168/246 (68%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E V M +S + + AVSCDE VD +++L E LTP +FA+ +R I
Sbjct: 494 AYKE----VAQTMYETLASYTHDIEAVSCDEALVDITEILAETRLTPDEFANAVRMEIKD 549
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+T C S G GSN L AR+AT+KAKP+GQ+HL P+ + DF+ +++LPGVG S+ KL
Sbjct: 550 QTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGRSMESKL 609
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG +TCGDLQ +++ +LQ E G+K G LY+ CRG DD+ + E +RKS+SAE+NYGI
Sbjct: 610 MSLGIRTCGDLQYMTMAKLQKEFGSKTGQMLYRFCRGLDDRPVRTEKERKSISAEINYGI 669
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E FL L+ E+++RLE V MKGK +TLK+MVR AP E++K+ GHG+CD
Sbjct: 670 RFSQPKEAEAFLLSLSEEIQRRLEAVGMKGKRLTLKIMVRKPGAPVESAKYGGHGICDIT 729
Query: 2116 TKSSSL 2121
T++ +L
Sbjct: 730 TRTVTL 735
Score = 253 (94.1 bits), Expect = 1.4e-105, Sum P(5) = 1.4e-105
Identities = 58/165 (35%), Positives = 98/165 (59%)
Query: 1512 TVKTKESKLETVNISAP-KPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNEL 1570
TV+ S T ++ +P + + S S+ +F+ +FY++SRLHH+S ++VN L
Sbjct: 265 TVQGPSSTKSTSSVPSPSRGRPSGPPRPSDFNFISDFYSRSRLHHISAWKWELTEFVNAL 324
Query: 1571 REKHDGVFRGIEAIRKWK---TSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVS 1627
+++ GVF G E ++K K ++L +T+ ++ S SP + IMH+DMDCFFVS
Sbjct: 325 QKQSSGVFPGREKLKKMKAGRSALVVTDTGNMS-VLS---SPRH-QSCIMHVDMDCFFVS 379
Query: 1628 VGIRHHPELQDEPVAVAHGKGNS-SKVREGVDRQAEFDIYRQRTM 1671
VGIR+ P+L+ +PVAV +G + +R G + Q E+ Y+ + +
Sbjct: 380 VGIRNRPDLKGKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKIL 424
Score = 244 (91.0 bits), Expect = 1.4e-105, Sum P(5) = 1.4e-105
Identities = 57/107 (53%), Positives = 75/107 (70%)
Query: 1360 CMMLDAYYIVPSAEELKALMMLHGGIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIK 1418
C +++ + PSAEEL+ LMMLHGG YH +Y S+TTHIIA+NLP+ KIK+LK G+K+I+
Sbjct: 2 CFIIN--FTDPSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIR 58
Query: 1419 PEWIVDSISAGKLLDHKKYLLYTGTDAKPLTKLLQKSYFENTEAPCC 1465
PEWIV+SI AG+LL Y LY+ KP + +QKS N P C
Sbjct: 59 PEWIVESIKAGRLLSCIPYQLYS----KPSS--VQKSLNFN---PVC 96
Score = 157 (60.3 bits), Expect = 1.4e-105, Sum P(5) = 1.4e-105
Identities = 29/53 (54%), Positives = 39/53 (73%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVS 1731
R+ G+ NGM+ G+A + CPNL+ VPYDF YKEV+ +Y +AS T +IEAVS
Sbjct: 465 RQVGIRNGMYFGYAKQLCPNLQAVPYDFHAYKEVAQTMYETLASYTHDIEAVS 517
Score = 132 (51.5 bits), Expect = 1.3e-55, Sum P(4) = 1.3e-55
Identities = 37/140 (26%), Positives = 72/140 (51%)
Query: 1761 LSREQNTTE-PLAQDIICADSHTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRT 1819
L E T+E PL + + A + + P D+STS+ + L+ V +++T
Sbjct: 1068 LKHEGPTSEKPLGE--LSASTSGVAGLSGLQP--DVSTSVRPPAPN--LAGAVEFSDVKT 1121
Query: 1820 MLREWMCE-SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVGKKESTVWAEAYQ 1878
+LREW+ S P DI +Y ++L+EE+ L + +++++++R + + +VW A+
Sbjct: 1122 LLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWNMAFD 1181
Query: 1879 EMLSCVQSAMKHKPSSESKI 1898
+L VQ ++ S K+
Sbjct: 1182 FILDNVQVVLQQTYGSTLKV 1201
Score = 116 (45.9 bits), Expect = 3.0e-53, Sum P(5) = 3.0e-53
Identities = 23/68 (33%), Positives = 41/68 (60%)
Query: 2135 LLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRG 2194
++VR AP E++K+ GHG+CD T++ +L A I L + + +K+ ++RG
Sbjct: 706 IMVRKPGAPVESAKYGGHGICDITTRTVTLDQATDSAKLIGTATLNMFHTMKLSIADMRG 765
Query: 2195 IGIQVSKL 2202
+GI V++L
Sbjct: 766 VGIHVNQL 773
Score = 79 (32.9 bits), Expect = 9.3e-67, Sum P(4) = 9.3e-67
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 1180 SAPKP---QASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
S P P + S S+ +F+ +FY++SRLHH+S ++VN L
Sbjct: 277 SVPSPSRGRPSGPPRPSDFNFISDFYSRSRLHHISAWKWELTEFVNAL 324
Score = 54 (24.1 bits), Expect = 3.7e-64, Sum P(4) = 3.7e-64
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 1261 QYVNELREKHDGVFRGIEAIRKWK 1284
++VN L+++ GVF G E ++K K
Sbjct: 319 EFVNALQKQSSGVFPGREKLKKMK 342
Score = 53 (23.7 bits), Expect = 1.5e-35, Sum P(4) = 1.5e-35
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 1723 LTLNIEAVS-LYTNESFLNALPEDIRQEVLDDLSRQQS 1759
L L+IE S + S L ALP D+R++V + QQ+
Sbjct: 876 LNLSIEVPSPSQLDRSVLEALPPDLREQVEQACAVQQA 913
Score = 49 (22.3 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 2213 DTFFTNKGKPPDQLNNPRPGPSNSTITPGPSN--STLP-PGPSNS--TLPPGPSN 2262
D T P +NPR ++ + GPS+ ST P PS + PP PS+
Sbjct: 240 DPHRTKPFSSPPLHSNPRVNGAHHSTVQGPSSTKSTSSVPSPSRGRPSGPPRPSD 294
Score = 42 (19.8 bits), Expect = 1.4e-105, Sum P(5) = 1.4e-105
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 2212 IDTFFTNKGKPPDQLNNPRPGPSNSTITPGPSN-STLPPGPSNSTLPPGPS 2261
+D F ++G P + +P S T G + S L P S S PP P+
Sbjct: 1064 LDGFLKHEG-PTSE----KPLGELSASTSGVAGLSGLQPDVSTSVRPPAPN 1109
Score = 40 (19.1 bits), Expect = 9.2e-72, Sum P(4) = 9.2e-72
Identities = 22/81 (27%), Positives = 31/81 (38%)
Query: 1767 TTEPLAQDIICADS-HTLVRT-PSPSPILDMSTSILDTTTSHIL--SSNVSLQEMRTMLR 1822
T +P Q AD+ RT P SP L + + S + SS S + + R
Sbjct: 224 TVQPAQQSACSADALRDPHRTKPFSSPPLHSNPRVNGAHHSTVQGPSSTKSTSSVPSPSR 283
Query: 1823 EWMCESQPEPSDIEMFSEYLS 1843
P PSD S++ S
Sbjct: 284 G-RPSGPPRPSDFNFISDFYS 303
Score = 40 (19.1 bits), Expect = 3.0e-51, Sum P(3) = 3.0e-51
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 1880 MLSCVQSAMKHKPSSESK 1897
+LSC+ + KPSS K
Sbjct: 71 LLSCIPYQLYSKPSSVQK 88
Score = 39 (18.8 bits), Expect = 1.4e-62, Sum P(4) = 1.4e-62
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 503 LRGKLLNVREATHKQILENAEINNLVKIL 531
LRGK + + + + ++A+IN + +L
Sbjct: 424 LRGKAAEIPDPSTWESQDSAQINGIDSVL 452
>FB|FBgn0035150 [details] [associations]
symbol:Rev1 "Rev1" species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0017125 "deoxycytidyl
transferase activity" evidence=ISS;NAS] [GO:0019985 "translesion
synthesis" evidence=NAS] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=IMP] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 EMBL:AE014296 GO:GO:0000287
GO:GO:0003684 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0010569 GO:GO:0003887 GO:GO:0019985 Gene3D:3.30.1490.100
SUPFAM:SSF100879 GO:GO:0017125 GeneTree:ENSGT00530000062942
KO:K03515 OMA:TIPYDFD CTD:51455 FlyBase:FBgn0035150 EMBL:AB049435
RefSeq:NP_612047.1 UniGene:Dm.2203 SMR:Q9W0P2 IntAct:Q9W0P2
STRING:Q9W0P2 EnsemblMetazoa:FBtr0072557 GeneID:38079
KEGG:dme:Dmel_CG12189 UCSC:CG12189-RA InParanoid:Q9W0P2
GenomeRNAi:38079 NextBio:806885 Uniprot:Q9W0P2
Length = 995
Score = 600 (216.3 bits), Expect = 2.4e-105, Sum P(2) = 2.4e-105
Identities = 137/333 (41%), Positives = 206/333 (61%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ AVSCDEM+V+ + L EL++ + F S+LR+ + +TGC CS G NKL AR+ATK+
Sbjct: 415 IEAVSCDEMFVELTDLAHELNVDVMAFVSHLRQEVYSKTGCPCSAGVAGNKLLARMATKE 474
Query: 1959 AKPNGQFHL-TPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNE 2017
AKPNGQF L + I +M + L LPGVG S+ KL G CGD+QN +L++++
Sbjct: 475 AKPNGQFLLDSSNDILAYMAPMSLDLLPGVGSSISHKLKQAGLNNCGDVQNTTLEKMEKV 534
Query: 2018 VGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKR 2077
+G K G L+++CRG DD+ L +E RK+VSAE+N+GIRF N+ E E FL QL+ EV KR
Sbjct: 535 LGKKLGQNLFQNCRGIDDRPLAYEQIRKTVSAEMNFGIRFTNSVECEQFLCQLSEEVTKR 594
Query: 2078 LEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPL-IITYFLL- 2135
L E++ K + I LK+MVR+AEAP E SK++GHGVCD I KSS + + +IT +L
Sbjct: 595 LVEIRRKARSINLKIMVRAAEAPVETSKYMGHGVCDIINKSSLIKYATDDVNVITTVVLD 654
Query: 2136 LVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVD-PVELRG 2194
L++ A+ P + + G G+ ++T+ + + + I KE+ +++++ D P+
Sbjct: 655 LMKDADIPPDELR--GLGI--HLTRLEDANE-VRKENNI-KEMFGKMSEMRKDKPIPQGA 708
Query: 2195 IGIQVSKLEHQSKTLATIDTFFTNKGKPPDQLN 2227
+G + + +K L F NK KP + N
Sbjct: 709 VGDKSIGDDKVNKPLV-----FENKPKPREPRN 736
Score = 535 (193.4 bits), Expect = 2.4e-105, Sum P(2) = 2.4e-105
Identities = 161/495 (32%), Positives = 243/495 (49%)
Query: 1329 LEEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHH 1388
LEEQF ++ + +FQG++IFVNG T PSA+ELK +MM+HGG +HH
Sbjct: 23 LEEQFAAASDPFRKSDLFQGISIFVNGRTD-----------PSADELKRIMMVHGGTFHH 71
Query: 1389 YESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYLLYTGTDAKPL 1448
YE S TT+IIAS LP K++ + K I +W+VD + K++D+K YLLYT + K
Sbjct: 72 YERSHTTYIIASVLPDVKVRNMNLS-KFISAKWVVDCLEKKKIVDYKPYLLYT--NQKTS 128
Query: 1449 TKLLQKSYFENTEAPCCSKXXXXXXXXXXXXXXXXDNT-EESKSEAVNSEESKSEAANPI 1507
+L F + ++ D+T +E++ E ++ +A
Sbjct: 129 QPML---IFGKPKDNGANESKSDVEPPKDKAEVEVDSTKDETQMELGGILKNLQQAVATS 185
Query: 1508 ESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYV 1567
K+ ESK+ N+S +++ + A++ +FL EFY SRLHH++T+G+ FKQYV
Sbjct: 186 PEKEA-SASESKI--TNLSTTSNNSTTARTAADPNFLSEFYKNSRLHHIATLGAGFKQYV 242
Query: 1568 NELREKHDGV-FRGIEAIRKWKTSLGITEDE-----DLEETFSDNPSPSEPE----PV-I 1616
LR+KH F E ++ S + D++ F + PE P+ +
Sbjct: 243 CRLRQKHGTQGFPKRETLKSLANSHHNCLERYVMHIDMDCFFVSVGLRTRPELRGLPIAV 302
Query: 1617 MHIDMDCFFVSVGIRHHPELQDEPVAVA-------HGKGNSSKVREGVDRQAEFDIYRQR 1669
H V + + + E A H + KVR G D++
Sbjct: 303 THSKGGNAATDVPVHPQADRKAELELFAQRFEHHFHDGDKAEKVRSGFDKKMSLS----- 357
Query: 1670 TMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEA 1729
+ RE G+ NGMFVG ALK CP LK +PYDFEGYKEV++ LY+ +A TLNIEA
Sbjct: 358 EIASCSYEAREKGIRNGMFVGQALKLCPELKTIPYDFEGYKEVAFTLYDTVAQYTLNIEA 417
Query: 1730 VSLYTNESF--LNALPEDIRQEVLDDLSR-QQSVLSREQ-NTTEPLAQDIICADSHTLVR 1785
VS +E F L L ++ +V+ +S +Q V S+ + +A + + A T
Sbjct: 418 VSC--DEMFVELTDLAHELNVDVMAFVSHLRQEVYSKTGCPCSAGVAGNKLLARMATKEA 475
Query: 1786 TPSPSPILDMSTSIL 1800
P+ +LD S IL
Sbjct: 476 KPNGQFLLDSSNDIL 490
Score = 132 (51.5 bits), Expect = 7.7e-63, Sum P(2) = 7.7e-63
Identities = 34/103 (33%), Positives = 57/103 (55%)
Query: 1124 ESNLRPSADKAESRKRTQTSQGTESEERKGHLRRWRRKEEESTQTVQVELREG--VNISA 1181
+S++ P DKAE + T T+ E G L+ ++ S + + E N+S
Sbjct: 146 KSDVEPPKDKAEVEVDS-TKDETQME-LGGILKNLQQAVATSPEK-EASASESKITNLST 202
Query: 1182 PKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
+++ + A++ +FL EFY SRLHH++T+G+ FKQYV +L
Sbjct: 203 TSNNSTTARTAADPNFLSEFYKNSRLHHIATLGAGFKQYVCRL 245
Score = 89 (36.4 bits), Expect = 4.5e-51, Sum P(2) = 4.5e-51
Identities = 24/109 (22%), Positives = 54/109 (49%)
Query: 1792 ILDMSTSILDTTTSHIL---SSNVSLQEM------RTMLREWMC-ESQPEPSDIEMFSEY 1841
+ D + D HIL S V + E+ + +L +W+ E P+P+D+++ +
Sbjct: 867 VADYIDDLPDFVNPHILKLISHPVEMPELLMGDNYKDLLNDWVSREEVPKPNDVDLILKQ 926
Query: 1842 LSNLVEERHLNPIVILLRFLRRHVGKKEST--VWAEAYQEMLSCVQSAM 1888
+S +++ L+ + ++++ R + K S+ W AY+ + +Q+ M
Sbjct: 927 VSRMIKNDQLDHVCDVMKYWCRIINMKRSSSCCWHVAYKHIEESIQNQM 975
Score = 59 (25.8 bits), Expect = 3.7e-55, Sum P(2) = 3.7e-55
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 1254 TMGSMFKQYVNELREKH 1270
T+G+ FKQYV LR+KH
Sbjct: 233 TLGAGFKQYVCRLRQKH 249
Score = 55 (24.4 bits), Expect = 0.00093, Sum P(3) = 0.00093
Identities = 34/171 (19%), Positives = 80/171 (46%)
Query: 1737 SFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQ-DIICADSHTLVRTPSPSPILD- 1794
S + L ED+ ++ +D+ R + + +RE++ +A+ D + + +R+P P+L+
Sbjct: 769 SLVPKLDEDVLAQLPEDI-RLEVIANREEHLC--IAEYDGYRSPQYPTLRSP---PLLNP 822
Query: 1795 -MSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLNP 1853
++T++ + + S R R+ E + ++ ++Y+ +L + +NP
Sbjct: 823 YVTTNVSPLKATDLKPSTSRAAVARLQKRKERKEQEHYIRSDQIVADYIDDLPD--FVNP 880
Query: 1854 IVILLRFLRRHVGKKESTVWAEAYQEMLS-CVQSAMKHKPSSESKIVSAVS 1903
+ L+ + V E + + Y+++L+ V KP+ I+ VS
Sbjct: 881 HI--LKLISHPVEMPE-LLMGDNYKDLLNDWVSREEVPKPNDVDLILKQVS 928
Score = 44 (20.5 bits), Expect = 4.0e-07, Sum P(3) = 4.0e-07
Identities = 12/57 (21%), Positives = 25/57 (43%)
Query: 1499 SKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLGE---FYNKSR 1552
++ E AN + + +K K+ + P PQ + + +D + + F NK +
Sbjct: 674 TRLEDANEVRKENNIKEMFGKMSEMRKDKPIPQGAVGDKSIGDDKVNKPLVFENKPK 730
Score = 41 (19.5 bits), Expect = 5.0e-46, Sum P(2) = 5.0e-46
Identities = 8/30 (26%), Positives = 20/30 (66%)
Query: 1952 ARLATKKAKPNGQFHL-TPQIISDFMLNIP 1980
ARL +K + + ++ + QI++D++ ++P
Sbjct: 846 ARLQKRKERKEQEHYIRSDQIVADYIDDLP 875
Score = 37 (18.1 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 1568 NELREKHD--GVFRGIEAIRKWKT-SLGITEDEDLEE-------TFSDNPSPSEPEPVI 1616
NE+R++++ +F + +RK K G D+ + + F + P P EP V+
Sbjct: 680 NEVRKENNIKEMFGKMSEMRKDKPIPQGAVGDKSIGDDKVNKPLVFENKPKPREPRNVL 738
>WB|WBGene00022854 [details] [associations]
symbol:cin-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0016246 "RNA interference" evidence=IMP]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00521 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00433 SMART:SM00434 GO:GO:0005524 GO:GO:0009792
GO:GO:0016246 GO:GO:0006261 GO:GO:0000910 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 EMBL:FO081697
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 GeneTree:ENSGT00390000016222
EMBL:EU191083 RefSeq:NP_495440.4 UniGene:Cel.20522
ProteinModelPortal:G5ECQ8 SMR:G5ECQ8 EnsemblMetazoa:ZK1127.7
GeneID:191525 KEGG:cel:CELE_ZK1127.7 CTD:191525 WormBase:ZK1127.7
OMA:SISIRTM NextBio:949466 Uniprot:G5ECQ8
Length = 842
Score = 610 (219.8 bits), Expect = 2.4e-100, Sum P(3) = 2.4e-100
Identities = 112/168 (66%), Positives = 135/168 (80%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+PKLEDANDAGTKNS CTLILTEGDSAK+LAVSGL VVGRDKYGVFP R KLLNV +
Sbjct: 40 IPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDKYGVFPFRRKLLNVCDLN 99
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
QI ++AE+N ++KILGLQY+KKY T +D KTLRYG+L+IM + D DGS KGL++NF
Sbjct: 100 VNQIADSAEVNAIIKILGLQYTKKYETEDDFKTLRYGKLLIMANHDSDGSQFKGLLLNFF 159
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNW 622
H WP L + F+E+FITPI KAT+ +EE+SFYSLPE+ EW+ T NW
Sbjct: 160 HRFWPALFKRDFVEDFITPIAKATEGKEEVSFYSLPEYSEWRMNTDNW 207
Score = 347 (127.2 bits), Expect = 2.4e-100, Sum P(3) = 2.4e-100
Identities = 61/97 (62%), Positives = 75/97 (77%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPEWY PIIPMVLVNGA+G GTGW T IPN+NPRE+V NIKR+I GE + PWYKN
Sbjct: 434 RIEPEWYCPIIPMVLVNGAQGTGTGWSTNIPNYNPRELVKNIKRLIAGEPQKALAPWYKN 493
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
F+G+I SRF GE+++LDD+ +EITEL + +W
Sbjct: 494 FRGKIIQIDPSRFACYGEVSVLDDNTIEITELPIKQW 530
Score = 150 (57.9 bits), Expect = 2.4e-100, Sum P(3) = 2.4e-100
Identities = 33/92 (35%), Positives = 55/92 (59%)
Query: 810 DNELAKPQKTGP-QLERQERQA-AEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMER 867
D +L + +++G +L+ + A A E ++ S + E DYDYL+G+ L+ E
Sbjct: 693 DQKLKELRESGEIELDEDDLAAVAVEEGEDISSAAKAVETKLSDYDYLVGLALIKLSEEE 752
Query: 868 KNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
KN+L+K+ ++KM E+ +L+KK DLW DLD
Sbjct: 753 KNKLIKESEEKMAEVRVLEKKTWQDLWITDLD 784
Score = 46 (21.3 bits), Expect = 1.9e-57, Sum P(3) = 1.9e-57
Identities = 11/59 (18%), Positives = 27/59 (45%)
Query: 2027 YKHCRGEDDKELTFEHQRKSVSAEVNYGIRF---QNNQEMETFLKQLAGEVEKRLEEVK 2082
+K+ +DDK + +K + A +Y ++ +N ++ + ++ E R +K
Sbjct: 240 FKYNGADDDKAVNMAFSKKKIEARTDYLMKLMQDKNQRKQQGLAEECLYNKETRFVTLK 298
Score = 42 (19.8 bits), Expect = 1.9e-57, Sum P(3) = 1.9e-57
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 2154 VCDYITKSSSLPMYISQASQILKEVLFI----VNKLKVDPVELRGIGIQVSKLEHQSKTL 2209
VC + S+P + ++VLF NK +V +L G ++S H ++L
Sbjct: 306 VCSW--NLHSIPCLVDGLKPGQRKVLFACFKRANKREVKVAQLAGAVAEISAYHHGEQSL 363
Score = 37 (18.1 bits), Expect = 1.8e-88, Sum P(3) = 1.8e-88
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 1486 TEESKSEAVNSEESKSEAANPIESK 1510
+EE K++ + E K +E K
Sbjct: 749 SEEEKNKLIKESEEKMAEVRVLEKK 773
Score = 37 (18.1 bits), Expect = 8.2e-68, Sum P(3) = 8.2e-68
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 710 LPMKPWYKNFKGEI 723
LP+K W +++K ++
Sbjct: 525 LPIKQWTQDYKEKV 538
>UNIPROTKB|G5ECQ8 [details] [associations]
symbol:cin-4 "Chromosome instability 4" species:6239
"Caenorhabditis elegans" [GO:0009295 "nucleoid" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00521 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00433
SMART:SM00434 GO:GO:0005524 GO:GO:0009792 GO:GO:0016246
GO:GO:0006261 GO:GO:0000910 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 EMBL:FO081697 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 GeneTree:ENSGT00390000016222
EMBL:EU191083 RefSeq:NP_495440.4 UniGene:Cel.20522
ProteinModelPortal:G5ECQ8 SMR:G5ECQ8 EnsemblMetazoa:ZK1127.7
GeneID:191525 KEGG:cel:CELE_ZK1127.7 CTD:191525 WormBase:ZK1127.7
OMA:SISIRTM NextBio:949466 Uniprot:G5ECQ8
Length = 842
Score = 610 (219.8 bits), Expect = 2.4e-100, Sum P(3) = 2.4e-100
Identities = 112/168 (66%), Positives = 135/168 (80%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
+PKLEDANDAGTKNS CTLILTEGDSAK+LAVSGL VVGRDKYGVFP R KLLNV +
Sbjct: 40 IPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDKYGVFPFRRKLLNVCDLN 99
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
QI ++AE+N ++KILGLQY+KKY T +D KTLRYG+L+IM + D DGS KGL++NF
Sbjct: 100 VNQIADSAEVNAIIKILGLQYTKKYETEDDFKTLRYGKLLIMANHDSDGSQFKGLLLNFF 159
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNW 622
H WP L + F+E+FITPI KAT+ +EE+SFYSLPE+ EW+ T NW
Sbjct: 160 HRFWPALFKRDFVEDFITPIAKATEGKEEVSFYSLPEYSEWRMNTDNW 207
Score = 347 (127.2 bits), Expect = 2.4e-100, Sum P(3) = 2.4e-100
Identities = 61/97 (62%), Positives = 75/97 (77%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPEWY PIIPMVLVNGA+G GTGW T IPN+NPRE+V NIKR+I GE + PWYKN
Sbjct: 434 RIEPEWYCPIIPMVLVNGAQGTGTGWSTNIPNYNPRELVKNIKRLIAGEPQKALAPWYKN 493
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
F+G+I SRF GE+++LDD+ +EITEL + +W
Sbjct: 494 FRGKIIQIDPSRFACYGEVSVLDDNTIEITELPIKQW 530
Score = 150 (57.9 bits), Expect = 2.4e-100, Sum P(3) = 2.4e-100
Identities = 33/92 (35%), Positives = 55/92 (59%)
Query: 810 DNELAKPQKTGP-QLERQERQA-AEGEDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMER 867
D +L + +++G +L+ + A A E ++ S + E DYDYL+G+ L+ E
Sbjct: 693 DQKLKELRESGEIELDEDDLAAVAVEEGEDISSAAKAVETKLSDYDYLVGLALIKLSEEE 752
Query: 868 KNELLKKRDDKMTELNILKKKAPTDLWSDDLD 899
KN+L+K+ ++KM E+ +L+KK DLW DLD
Sbjct: 753 KNKLIKESEEKMAEVRVLEKKTWQDLWITDLD 784
Score = 46 (21.3 bits), Expect = 1.9e-57, Sum P(3) = 1.9e-57
Identities = 11/59 (18%), Positives = 27/59 (45%)
Query: 2027 YKHCRGEDDKELTFEHQRKSVSAEVNYGIRF---QNNQEMETFLKQLAGEVEKRLEEVK 2082
+K+ +DDK + +K + A +Y ++ +N ++ + ++ E R +K
Sbjct: 240 FKYNGADDDKAVNMAFSKKKIEARTDYLMKLMQDKNQRKQQGLAEECLYNKETRFVTLK 298
Score = 42 (19.8 bits), Expect = 1.9e-57, Sum P(3) = 1.9e-57
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 2154 VCDYITKSSSLPMYISQASQILKEVLFI----VNKLKVDPVELRGIGIQVSKLEHQSKTL 2209
VC + S+P + ++VLF NK +V +L G ++S H ++L
Sbjct: 306 VCSW--NLHSIPCLVDGLKPGQRKVLFACFKRANKREVKVAQLAGAVAEISAYHHGEQSL 363
Score = 37 (18.1 bits), Expect = 1.8e-88, Sum P(3) = 1.8e-88
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 1486 TEESKSEAVNSEESKSEAANPIESK 1510
+EE K++ + E K +E K
Sbjct: 749 SEEEKNKLIKESEEKMAEVRVLEKK 773
Score = 37 (18.1 bits), Expect = 8.2e-68, Sum P(3) = 8.2e-68
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 710 LPMKPWYKNFKGEI 723
LP+K W +++K ++
Sbjct: 525 LPIKQWTQDYKEKV 538
>ZFIN|ZDB-GENE-081105-180 [details] [associations]
symbol:si:dkey-57a22.7 "si:dkey-57a22.7"
species:7955 "Danio rerio" [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 ZFIN:ZDB-GENE-081105-180
GO:GO:0000287 GO:GO:0003684 GO:GO:0006281 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003887 eggNOG:COG0389
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 GeneTree:ENSGT00530000062942 KO:K03515
HOGENOM:HOG000154094 HOVERGEN:HBG054140 EMBL:CR392332 EMBL:CR536604
IPI:IPI00862463 RefSeq:NP_001116772.1 UniGene:Dr.61598 SMR:B0UY97
Ensembl:ENSDART00000134915 GeneID:570043 KEGG:dre:570043
NextBio:20889959 Uniprot:B0UY97
Length = 1268
Score = 568 (205.0 bits), Expect = 6.7e-100, Sum P(5) = 6.7e-100
Identities = 117/243 (48%), Positives = 161/243 (66%)
Query: 1876 AYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAK 1935
AY+E V AM +S + + A+SCDE VD + LL EL ++P + A +RE I +
Sbjct: 584 AYKE----VALAMYEILASYTHNIEALSCDEALVDATALLVELGVSPDELARSIREDIKE 639
Query: 1936 ETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL 1995
+TGC S G SN L AR+AT+KAKP GQ+ L + + DF+ + P+S LPGVG S+ KL
Sbjct: 640 KTGCCASVGMSSNILLARMATRKAKPKGQYLLRSEEVDDFIRDQPVSSLPGVGRSMSSKL 699
Query: 1996 NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGI 2055
SLG TCGDLQ +SL +LQ E G + G TL++ CRG DD+ + E +RKSVSAE+NY I
Sbjct: 700 TSLGVSTCGDLQQLSLSQLQREFGPRTGQTLFRFCRGLDDRPVRSEKERKSVSAEMNYNI 759
Query: 2056 RFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYI 2115
RF +E E+FL L+ EV+KRLE ++G+ +TLK+M+R AP E +K+ GHG+CD
Sbjct: 760 RFTQVEEAESFLNNLSMEVQKRLEGAGLRGRRVTLKVMMRKPGAPVEPAKYGGHGICDNF 819
Query: 2116 TKS 2118
+S
Sbjct: 820 ARS 822
Score = 272 (100.8 bits), Expect = 6.7e-100, Sum P(5) = 6.7e-100
Identities = 61/118 (51%), Positives = 81/118 (68%)
Query: 1329 LEEQFELEA----NSDSRGG-IFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHG 1383
LEEQF+ +A D + IF GVAI+VNGYT PSA EL+ LMMLHG
Sbjct: 30 LEEQFQKDAPREQKKDGKSSCIFSGVAIYVNGYTD-----------PSAAELRRLMMLHG 78
Query: 1384 GIYH-HYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYLLY 1440
G +H +Y S+TTHIIA+NLP+ KI++LK G+K+++PEWI+DSI AG+ L + +Y LY
Sbjct: 79 GQFHLYYSRSKTTHIIATNLPNFKIQELK-GEKVVRPEWIIDSIKAGRQLSYIQYQLY 135
Score = 243 (90.6 bits), Expect = 6.7e-100, Sum P(5) = 6.7e-100
Identities = 71/253 (28%), Positives = 113/253 (44%)
Query: 1433 DHKKYLLYTGTDAKPLTKLLQKSYFENTEAPCCSKXXXXXXXXXXXXXXXXDNTEESKSE 1492
DH +++ A + L Q Y E E PCCS ++
Sbjct: 261 DHHPHVV---DKASNQSHLPQDKYREGEE-PCCSYTESKANSHLRSLISAASPAKQPGPH 316
Query: 1493 AVNSEESKSEAAN------P----IESKQTVKTKESKLETVNISAPKPQAS-STKNASNE 1541
+ ++ + +N P + + TV+ S T N S ++ S K+++
Sbjct: 317 NMQTDLHQKPTSNSGTLGAPQKASLHDQTTVRLNGSYHVTSNSSTLANSSNQSGKSSAEA 376
Query: 1542 DFLGEFYNKSRLHHLSTMGSMFKQYVNELREKH----DGVFRGIEAIRKWKTSLGITEDE 1597
+ EF++ SRLHH+ST + F +YVN L+ + VF G E ++K K +
Sbjct: 377 GIISEFFSHSRLHHISTWRNEFSEYVNSLQSRRRAAGGAVFSGREKLKKLKANCNSVSHF 436
Query: 1598 DLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKV-REG 1656
D + +P + ++H+DMDCFFVSVGIRH P+L +PVAV +G R G
Sbjct: 437 DPGSLMA---APQVRQSCVLHVDMDCFFVSVGIRHRPDLIGKPVAVTSNRGPGRVAQRPG 493
Query: 1657 VDRQAEFDIYRQR 1669
+ Q EF Y+ +
Sbjct: 494 ANPQLEFQYYQNK 506
Score = 158 (60.7 bits), Expect = 3.1e-57, Sum P(4) = 3.1e-57
Identities = 35/79 (44%), Positives = 52/79 (65%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESF 1738
R+ G+ NGMF G A + CP+L+ VPYDF YKEV+ +Y ++AS T NIEA+S +E+
Sbjct: 555 RQAGVRNGMFFGRAKQLCPDLQSVPYDFHAYKEVALAMYEILASYTHNIEALSC--DEAL 612
Query: 1739 LNALPEDIRQEVL-DDLSR 1756
++A + V D+L+R
Sbjct: 613 VDATALLVELGVSPDELAR 631
Score = 129 (50.5 bits), Expect = 3.1e-57, Sum P(4) = 3.1e-57
Identities = 39/132 (29%), Positives = 68/132 (51%)
Query: 1770 PLA-QDIICADS-HTLVRTPSPSPILDMSTSILDTTTSHILSSNVSLQEMRTMLREWMCE 1827
PL QD+ C S T V P PI + ++ +H S E+RT+LREW+
Sbjct: 1145 PLREQDLKCPSSLSTDVPETLPKPIPRPAPTLAG---AHEFS------EIRTLLREWVTT 1195
Query: 1828 -SQPEPSDIEMFSEYLSNLVEERHLNPIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQS 1886
S+P DI +Y + LVE++ L + +++++++R + + +VW+ A+ +L VQ
Sbjct: 1196 ISEPMEEDILQVVKYCTELVEDKDLEKLYLVIKYMKRLMQQSSESVWSMAFDFVLDNVQV 1255
Query: 1887 AMKHKPSSESKI 1898
++ S KI
Sbjct: 1256 VVQQTYGSTLKI 1267
Score = 112 (44.5 bits), Expect = 6.7e-100, Sum P(5) = 6.7e-100
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 2135 LLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRG 2194
+++R AP E +K+ GHG+CD +S L I E + + + +K++ ++RG
Sbjct: 796 VMMRKPGAPVEPAKYGGHGICDNFARSVLLAQPTDSGRVIASEAIKLFHAMKLNVKDMRG 855
Query: 2195 IGIQVSKLE 2203
+G+QV +L+
Sbjct: 856 VGLQVQQLD 864
Score = 90 (36.7 bits), Expect = 1.8e-60, Sum P(4) = 1.8e-60
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 1188 STKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQLIS 1226
S K+++ + EF++ SRLHH+ST + F +YVN L S
Sbjct: 369 SGKSSAEAGIISEFFSHSRLHHISTWRNEFSEYVNSLQS 407
Score = 51 (23.0 bits), Expect = 3.9e-46, Sum P(4) = 3.9e-46
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 1721 ASLTLNIEAVS-LYTNESFLNALPEDIRQEVLDDLS-RQQSVLSREQNTTEP 1770
A L ++IE S + S L ALP DIR++V + R++ + +T P
Sbjct: 965 ACLNISIEVPSPSQVDPSVLKALPIDIRRQVEETWRYREEQPSTSSHYSTPP 1016
Score = 51 (23.0 bits), Expect = 1.9e-24, Sum P(4) = 1.9e-24
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 1636 LQDEPVAVAHGKGNS--SKVRE-GVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHA 1692
++D+PV+ G G S SK+ GV + +Q +++++ RE+G G +
Sbjct: 680 IRDQPVSSLPGVGRSMSSKLTSLGVSTCGDL---QQLSLSQL---QREFGPRTGQTL--- 730
Query: 1693 LKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQEV 1750
+ C L P E KE ++ A + NI + ESFLN L ++++ +
Sbjct: 731 FRFCRGLDDRPVRSE--KERK----SVSAEMNYNIRFTQVEEAESFLNNLSMEVQKRL 782
Score = 49 (22.3 bits), Expect = 6.7e-100, Sum P(5) = 6.7e-100
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 2243 SNSTLPPGPSNSTLPPGPS 2261
S+ + PP P ST PPGPS
Sbjct: 1010 SHYSTPPRPP-STPPPGPS 1027
Score = 49 (22.3 bits), Expect = 6.7e-100, Sum P(5) = 6.7e-100
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 2230 RPGPSNSTITPGPSNSTLPPGPS 2252
+P S+ TP ST PPGPS
Sbjct: 1005 QPSTSSHYSTPPRPPSTPPPGPS 1027
Score = 47 (21.6 bits), Expect = 1.1e-99, Sum P(5) = 1.1e-99
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 2227 NNPRPGPSNSTITPGPSNSTLPPGPSNSTLPPGPSNS 2263
N R P+ S P S+S+ PP PS + + P P S
Sbjct: 916 NQKRVTPALSP-PPSTSSSSSPP-PSFTIIDPMPGTS 950
Score = 47 (21.6 bits), Expect = 6.3e-93, Sum P(4) = 6.3e-93
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 2186 KVDPVELRGIGIQVSK-LEHQSKTLATIDTFFTNKGKPPDQLNNPRPGPS 2234
+VDP L+ + I + + +E + + ++ PP + P PGPS
Sbjct: 978 QVDPSVLKALPIDIRRQVEETWRYREEQPSTSSHYSTPPRPPSTPPPGPS 1027
Score = 45 (20.9 bits), Expect = 1.8e-99, Sum P(5) = 1.8e-99
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 2215 FFTNKGKPPDQLNNPRPGPSNSTITPGPSNSTLPPGPSNS 2254
F +N+ + L+ P P S+S+ +P PS + + P P S
Sbjct: 913 FSSNQKRVTPALSPP-PSTSSSS-SPPPSFTIIDPMPGTS 950
Score = 39 (18.8 bits), Expect = 3.6e-55, Sum P(4) = 3.6e-55
Identities = 13/54 (24%), Positives = 21/54 (38%)
Query: 1125 SNLRPSADKAESRKRTQTSQGTESE----ERKGHLRRWRRKEEESTQTVQVELR 1174
SN A+ + ++ G SE R H+ WR + E ++Q R
Sbjct: 357 SNSSTLANSSNQSGKSSAEAGIISEFFSHSRLHHISTWRNEFSEYVNSLQSRRR 410
Score = 39 (18.8 bits), Expect = 5.7e-25, Sum P(3) = 5.7e-25
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 1635 ELQDEPVAVAHGKGNS-SKVREGVDRQAEFDIYRQRTMNRM 1674
ELQ+E + KGN+ ++ V+++ F +Q + ++
Sbjct: 1065 ELQEELCSAYRNKGNAQAQASTVVEQKNSFPQLKQPAVGKL 1105
>ASPGD|ASPL0000012133 [details] [associations]
symbol:AN3909 species:162425 "Emericella nidulans"
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005819 "spindle" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017956 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573
PROSITE:PS50173 SMART:SM00384 InterPro:IPR001357 GO:GO:0000287
GO:GO:0003684 GO:GO:0006281 EMBL:BN001302 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 EMBL:AACD01000064 GO:GO:0003887
eggNOG:COG0389 Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 InterPro:IPR025527 Pfam:PF14377 KO:K03515
OrthoDB:EOG49PF6V RefSeq:XP_661513.1 ProteinModelPortal:Q5B6C1
STRING:Q5B6C1 EnsemblFungi:CADANIAT00004788 GeneID:2873330
KEGG:ani:AN3909.2 HOGENOM:HOG000216225 OMA:SAEVNWG Uniprot:Q5B6C1
Length = 1139
Score = 449 (163.1 bits), Expect = 8.2e-74, Sum P(4) = 8.2e-74
Identities = 94/200 (47%), Positives = 127/200 (63%)
Query: 1924 QFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSD 1983
+ A LR I +ETGC S G G N LQA++A +KAKP GQF L P + DF+ +P+ +
Sbjct: 476 EVAEQLRAAIKRETGCAVSVGIGGNILQAKVALRKAKPAGQFQLKPDAVLDFIGELPVQN 535
Query: 1984 LPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQ 2043
LPGVG+SL KL LG + D++++S ++L + +G K G L + RG D E+ E
Sbjct: 536 LPGVGYSLSAKLEDLGVKIVKDIRDLSREKLSSSLGPKTGAKLADYARGIDRTEVGNEVT 595
Query: 2044 RKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREA 2103
RKSVSAEVN+GIRF + E F++ L E+ +RL E MKG+ +TLK+M R+ +AP EA
Sbjct: 596 RKSVSAEVNWGIRFVTQDQAEDFMRSLCEELHRRLVENLMKGQQLTLKVMRRALDAPLEA 655
Query: 2104 SKFLGHGVCDYITKSSSLPI 2123
K LGHG CD KS L I
Sbjct: 656 VKHLGHGKCDVFNKSVILGI 675
Score = 231 (86.4 bits), Expect = 8.2e-74, Sum P(4) = 8.2e-74
Identities = 93/350 (26%), Positives = 149/350 (42%)
Query: 1329 LEEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHH 1388
L+ A +D+ IF+ V VNGYT+ PS ++L L++ HGG +
Sbjct: 51 LDNDIRSSAAADNCPQIFRSVVACVNGYTQ-----------PSLQDLHKLIVRHGGGFLQ 99
Query: 1389 YESSRT--THIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY-LLYTGTDA 1445
Y +T THIIAS+L K ++ + +++KP W+VDS++AG+LL Y +L G
Sbjct: 100 YLDGKTSATHIIASSLTPKKREEFRRY-RVVKPAWVVDSVNAGRLLPWDLYRVLDEGQGQ 158
Query: 1446 KPLT----KLLQKSYFENT---EAPCCSKXXXXXXXXXXXXXXXXD--NTEESK--SEAV 1494
K L +++ ++ T + S+ D T SK ++A
Sbjct: 159 KVLNFEGGRIVSQANSHRTNYKDESRASRYTSQWPSERATNDRSPDPPETPASKQSNDAT 218
Query: 1495 NSE----ESKSEAANPIESKQTVKTKESKLETVNISAP--KP-QASSTKNASNEDFLGEF 1547
S+ S S P +S + + + + P P + + + L
Sbjct: 219 QSDYGDFPSFSSLDQPAQSATSPSSPPPHGQGDRLGEPVITPGEPAENQRTDMGTTLSPQ 278
Query: 1548 YNKSRLHHLSTMGSMF-KQYVNELREKHDGVFRGIEAIRKWKTSLGIT-EDEDLEETFSD 1605
R+ + S + F +QY E R H + WK L + + E+ S
Sbjct: 279 QPDPRMRNSSVVNPDFLQQYYKESRLHH---------LSTWKAELKAQLQSKAQEKARSQ 329
Query: 1606 NPSPSEP--EPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKV 1653
P IMH+D DCFF +V HPEL+ +PVA+AHG G S++
Sbjct: 330 RRKKLVPGARRYIMHVDFDCFFAAVSTLKHPELEGKPVAIAHGTGTGSEI 379
Score = 155 (59.6 bits), Expect = 8.2e-74, Sum P(4) = 8.2e-74
Identities = 45/123 (36%), Positives = 64/123 (52%)
Query: 2138 RSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGI 2197
R+ +AP EA K LGHG CD KS L + + A + KE + ++ L + P +LRG+G+
Sbjct: 647 RALDAPLEAVKHLGHGKCDVFNKSVILGIATNAADVLGKEAIAMLRSLAISPGDLRGLGV 706
Query: 2198 QVSKLEHQSKTLATID------TFFTN----KGKP---PDQLNNPRPGPSNSTITPGPS- 2243
Q++KLE T D F + + +P PD L++PR G S S I GP
Sbjct: 707 QMTKLEPLKSTSEKSDGSQQQLAFKASTAPKRAQPIDDPDLLDSPRKGESES-IRHGPQL 765
Query: 2244 NST 2246
N T
Sbjct: 766 NDT 768
Score = 115 (45.5 bits), Expect = 8.2e-74, Sum P(4) = 8.2e-74
Identities = 27/100 (27%), Positives = 53/100 (53%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESF 1738
R G+ NGM++ AL+ CP+L+++PYDF Y+E S Y I + +++VS+ +E+
Sbjct: 387 RASGVKNGMWMKGALQACPDLRVLPYDFPAYEEASRKFYRAILGIDGLVQSVSI--DEAL 444
Query: 1739 LNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICA 1778
++ + + + + REQ + +A+ + A
Sbjct: 445 VDITTICLEAGGSEGKGVSEGSIYREQAKADEVAEQLRAA 484
Score = 97 (39.2 bits), Expect = 7.4e-19, Sum P(2) = 7.4e-19
Identities = 37/125 (29%), Positives = 57/125 (45%)
Query: 1738 FLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPSPSPILDMST 1797
FL ALPEDIR EVL++ +++S L Q T A + AD + ++
Sbjct: 947 FLAALPEDIRCEVLEEQKQKRSRLLH-QRTASTTAPRTVPADRGHSQHQEKHINLPNLPP 1005
Query: 1798 SILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLV-EERHLNPIVI 1856
T TS LS+ L++ T + P D+ + YL +V EER + V
Sbjct: 1006 R--PTFTSKRLSNPSDLRDEATAWHATFAQEGPFREDVTALAIYLKRVVAEERDVEKAVS 1063
Query: 1857 LLRFL 1861
L+++L
Sbjct: 1064 LVKWL 1068
Score = 88 (36.0 bits), Expect = 6.5e-59, Sum P(4) = 6.5e-59
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 1176 GVNISAPKPQASSTKNAS--NEDFLGEFYNKSRLHHLSTMGSMFKQYVNQLISLQQDK 1231
G +S +P +N+S N DFL ++Y +SRLHHLST + K QL S Q+K
Sbjct: 272 GTTLSPQQPDPRM-RNSSVVNPDFLQQYYKESRLHHLSTWKAELKA---QLQSKAQEK 325
Score = 49 (22.3 bits), Expect = 9.2e-63, Sum P(4) = 9.2e-63
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 2217 TNKGKPPDQLNNPRPGPSNSTITPGPSNSTLPPGPSNSTLPPGPS 2261
T KP + ++P+P PS ST+ T PP P PS
Sbjct: 866 TGSTKPQTE-SSPQPRPSGSTLKL--RKPTTPPKKRRGRPPLKPS 907
Score = 49 (22.3 bits), Expect = 7.3e-55, Sum P(4) = 7.3e-55
Identities = 21/92 (22%), Positives = 35/92 (38%)
Query: 1119 VLPGWESNLRPSADKAESRKRTQTSQGTESEERKGHLRRWRRKEEESTQTVQVELREGVN 1178
+LP W+ L D+ + +K G + H ++ + S T Q N
Sbjct: 143 LLP-WD--LYRVLDEGQGQKVLNFEGGRIVSQANSHRTNYKDESRASRYTSQWPSERATN 199
Query: 1179 ISAPKPQ---ASSTKNASNEDFLGEFYNKSRL 1207
+P P AS N + + G+F + S L
Sbjct: 200 DRSPDPPETPASKQSNDATQSDYGDFPSFSSL 231
Score = 42 (19.8 bits), Expect = 4.9e-62, Sum P(4) = 4.9e-62
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 2230 RPGPSNSTITPGPSNSTLPPGPSNSTL 2256
+P +N+ T + S+ P PS STL
Sbjct: 860 QPSVNNTGSTKPQTESSPQPRPSGSTL 886
Score = 42 (19.8 bits), Expect = 6.1e-13, Sum P(3) = 6.1e-13
Identities = 15/81 (18%), Positives = 35/81 (43%)
Query: 1721 ASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADS 1780
A + I V+ E F+ +L E++ + ++++L + Q + + + +
Sbjct: 601 AEVNWGIRFVTQDQAEDFMRSLCEELHRRLVENLMKGQQLTLKVMRRALDAPLEAVKHLG 660
Query: 1781 HTLVRTPSPSPILDMSTSILD 1801
H + S IL ++T+ D
Sbjct: 661 HGKCDVFNKSVILGIATNAAD 681
Score = 37 (18.1 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 1739 LNALPEDIRQEVLDDLSRQQSVLSREQNTTEP 1770
L LPED+ EVL + Q SV +T+P
Sbjct: 843 LAELPEDVLAEVLGYYN-QPSV--NNTGSTKP 871
>WB|WBGene00014066 [details] [associations]
symbol:rev-1 species:6239 "Caenorhabditis elegans"
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] InterPro:IPR001126 InterPro:IPR012112
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PIRSF:PIRSF036573 PROSITE:PS50173 InterPro:IPR001357 GO:GO:0009792
GO:GO:0006898 GO:GO:0040010 GO:GO:0000287 GO:GO:0003684
GO:GO:0006281 GO:GO:0006974 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0003887 eggNOG:COG0389 Gene3D:3.30.1490.100
SUPFAM:SSF100879 GeneTree:ENSGT00530000062942 EMBL:Z46812 KO:K03515
PIR:T27970 RefSeq:NP_495663.1 ProteinModelPortal:Q09615 SMR:Q09615
IntAct:Q09615 MINT:MINT-227346 STRING:Q09615 EnsemblMetazoa:ZK675.2
GeneID:174275 KEGG:cel:CELE_ZK675.2 UCSC:ZK675.2 CTD:174275
WormBase:ZK675.2 HOGENOM:HOG000016674 InParanoid:Q09615 OMA:DWITESI
NextBio:883331 Uniprot:Q09615
Length = 1027
Score = 419 (152.6 bits), Expect = 6.7e-64, Sum P(4) = 6.7e-64
Identities = 92/230 (40%), Positives = 135/230 (58%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLT-PLQFASYLRETIAKETGCTCSTGFGSNKLQARLATK 1957
V AVSCDEMY++ S ++ + P A ++R+ I ++T C S G GS L ARLAT+
Sbjct: 537 VRAVSCDEMYINMSSFCEKYEINDPTILAEHIRKVIREKTQCPASVGIGSTSLLARLATR 596
Query: 1958 KAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSL-GAQT-CGDLQNISLKRLQ 2015
AKP+G F + ++F+ + DLPG G+ ++ +L S G T C +LQ + + L
Sbjct: 597 HAKPDGVFWVNAHKKNEFISEEKVKDLPGFGYEMMNRLTSFFGDITKCRELQLKTERELV 656
Query: 2016 NEVGNKNGLTLYKHCRG--EDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGE 2073
G K + + CRG ED + H RKSVS ++NYGIRF E+ + + E
Sbjct: 657 PVFGPKLASKILRQCRGIEEDPDDFWATHVRKSVSCDINYGIRFTKRGEVIQLMTAIGAE 716
Query: 2074 VEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPI 2123
+E++L + K+ ITLKLMVRSA AP + SKF+GHG+CD TK+ +L +
Sbjct: 717 LERKLIDSKLTAGSITLKLMVRSANAPIQTSKFMGHGICDTFTKTCNLNV 766
Score = 213 (80.0 bits), Expect = 6.7e-64, Sum P(4) = 6.7e-64
Identities = 49/128 (38%), Positives = 72/128 (56%)
Query: 1613 EPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMN 1672
E + H+D+DCFFVSV +R+ +L+ + VA+ H KG S V + Y
Sbjct: 437 ESTVFHVDLDCFFVSVAVRNRIDLKHKEVAITHSKGTISNSMSEVASCS----YA----- 487
Query: 1673 RMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSL 1732
R+ G+ NGM V AL+KCP L ++PY FE Y +VS +Y ++AS TL + AVS
Sbjct: 488 -----ARDCGVKNGMLVRDALQKCPQLTLLPYQFEDYVQVSRKIYEILASYTLEVRAVSC 542
Query: 1733 YTNESFLN 1740
+E ++N
Sbjct: 543 --DEMYIN 548
Score = 173 (66.0 bits), Expect = 6.7e-64, Sum P(4) = 6.7e-64
Identities = 37/97 (38%), Positives = 60/97 (61%)
Query: 1345 IFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYH-HYESSRTTHIIASNLP 1403
I +G ++FVNGYT P A ++ LM+ HGG YH +Y+ T++ IAS++
Sbjct: 255 IMEGFSVFVNGYTD-----------PPALVIRDLMISHGGEYHCYYQHGITSYTIASSIA 303
Query: 1404 HTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYLLY 1440
KI +++ + IK +WI +SI+AGK LD++ +L+Y
Sbjct: 304 TAKINRIRENEIFIKADWITESIAAGKPLDYRDFLIY 340
Score = 149 (57.5 bits), Expect = 3.0e-57, Sum P(4) = 3.0e-57
Identities = 42/134 (31%), Positives = 69/134 (51%)
Query: 1520 LETVNISAPKPQASSTK--NASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNELREKHDGV 1577
+ T N SS + +A N +F+ ++Y +SRLH +ST+ K +V L K +G
Sbjct: 356 ISTRNTGGNNETTSSNQFSDARNPNFIRDYYARSRLHLISTLAQDMKDFVANL--KLEG- 412
Query: 1578 FRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQ 1637
K + E+++L + S + S E + H+D+DCFFVSV +R+ +L+
Sbjct: 413 ----------KLTEKCFEEKELIDMKSLSNEISR-ESTVFHVDLDCFFVSVAVRNRIDLK 461
Query: 1638 DEPVAVAHGKGNSS 1651
+ VA+ H KG S
Sbjct: 462 HKEVAITHSKGTIS 475
Score = 141 (54.7 bits), Expect = 5.2e-34, Sum P(4) = 5.2e-34
Identities = 27/73 (36%), Positives = 45/73 (61%)
Query: 2135 LLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRG 2194
L+VRSA AP + SKF+GHG+CD TK+ +L + ++ + E + + K+ +LRG
Sbjct: 735 LMVRSANAPIQTSKFMGHGICDTFTKTCNLNVPTTRGESLTSEAMKLYAKVSPKVEDLRG 794
Query: 2195 IGIQVSKLEHQSK 2207
+G+ KL+ + K
Sbjct: 795 VGVTCGKLKSKLK 807
Score = 70 (29.7 bits), Expect = 3.4e-53, Sum P(4) = 3.4e-53
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 1191 NASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQL 1224
+A N +F+ ++Y +SRLH +ST+ K +V L
Sbjct: 375 DARNPNFIRDYYARSRLHLISTLAQDMKDFVANL 408
Score = 48 (22.0 bits), Expect = 6.7e-64, Sum P(4) = 6.7e-64
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 302 YTDRQDEDGDPVKII-YENVNPRWEVAIAPSDRG 334
+TD D D K + NVN R AI SD G
Sbjct: 7 FTDHPDSDDSFEKFVPTPNVNRRRSDAIIVSDEG 40
Score = 44 (20.5 bits), Expect = 1.7e-63, Sum P(4) = 1.7e-63
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 283 VFLNGEKLPVKNFQDYVKL 301
+ ++G+ + NF DY+++
Sbjct: 214 ITIHGQNFEINNFNDYMRM 232
Score = 40 (19.1 bits), Expect = 1.2e-26, Sum P(5) = 1.2e-26
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 1910 DCSQLLQELSLTPLQFASYLR 1930
D Q +L+L P QF Y++
Sbjct: 501 DALQKCPQLTLLPYQFEDYVQ 521
Score = 40 (19.1 bits), Expect = 8.6e-07, Sum P(3) = 8.6e-07
Identities = 33/144 (22%), Positives = 53/144 (36%)
Query: 1484 DNTEESKSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDF 1543
D E KS +N + +E V+ + ++LE I +P S N ++
Sbjct: 876 DIPEIVKSTLLNGRSDNNLELEDLEDDGLVENRLAELEC--IIQNEPTKESVTNL--QEM 931
Query: 1544 LGEFYNKSRLHHLSTMGSMFKQYVNELREKHD----GVFR----GIEAIRKWKTSLGITE 1595
L N +L T+ F++ ++ + D VF IE K I
Sbjct: 932 LSTLLNYGKLSAFETVFRKFEE-ISMDSSRCDTAWFSVFHLMVPFIEEESKDLLEFPIAT 990
Query: 1596 DEDLEETFS---DNPSPSEPEPVI 1616
+L + DN S S PEP +
Sbjct: 991 TRNLGAMIASNTDNTSISSPEPFV 1014
>UNIPROTKB|F1NWD7 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] InterPro:IPR001241
InterPro:IPR003594 InterPro:IPR013506 Pfam:PF00204 Pfam:PF02518
PRINTS:PR00418 SMART:SM00387 SMART:SM00433 GO:GO:0005524
GO:GO:0005694 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 GeneTree:ENSGT00390000016222 EMBL:AADN02001127
IPI:IPI00586348 Ensembl:ENSGALT00000018433 ArrayExpress:F1NWD7
Uniprot:F1NWD7
Length = 261
Score = 639 (230.0 bits), Expect = 5.2e-61, P = 5.2e-61
Identities = 124/193 (64%), Positives = 148/193 (76%)
Query: 158 EDKVTGV-VPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKK 216
E KV V VP +IFG LLTSSNY+D+E K+ GGRNGYGAKLCNIFS+KF VET+C EYK
Sbjct: 69 EHKVEKVYVPALIFGQLLTSSNYDDDEKKIVGGRNGYGAKLCNIFSTKFTVETACKEYKH 128
Query: 217 SFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
SFKQ W +NM K + P+IK DD+T ITF PDL+KFKM LDKD+V L+TRRAYD A
Sbjct: 129 SFKQTWMNNMMKTSEPKIKHFEGDDYTCITFQPDLSKFKMEKLDKDIVSLMTRRAYDLAG 188
Query: 277 STKDVKVFLNGEKLPVKNFQDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGF 335
S K VKV LNG+KLPV F+ YV LY D+ DE G +K+I+E VN RW+V + S++GF
Sbjct: 189 SCKGVKVMLNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHEVVNERWDVCLTLSEKGF 248
Query: 336 QQVSFVNSIATTK 348
QQ+SFVNSIATTK
Sbjct: 249 QQISFVNSIATTK 261
Score = 275 (101.9 bits), Expect = 2.7e-22, P = 2.7e-22
Identities = 48/73 (65%), Positives = 61/73 (83%)
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
+ +NA DNKQRD M CIKI+++ E+N IS+WNNGKGIPVVEHK EK++VP +IFG LLT
Sbjct: 28 VSLNAADNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLT 87
Query: 151 SSNYNDEEDKVTG 163
SSNY+D+E K+ G
Sbjct: 88 SSNYDDDEKKIVG 100
>UNIPROTKB|J3KTB7 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=IEA]
[GO:0030261 "chromosome condensation" evidence=IEA] [GO:0040016
"embryonic cleavage" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001241 InterPro:IPR003594 Pfam:PF02518 PRINTS:PR00418
GO:GO:0005524 GO:GO:0005694 Gene3D:3.30.565.10 SUPFAM:SSF55874
GO:GO:0006265 GO:GO:0003918 EMBL:AC080112 HGNC:HGNC:11989
Ensembl:ENST00000581055 Uniprot:J3KTB7
Length = 147
Score = 531 (192.0 bits), Expect = 1.6e-49, P = 1.6e-49
Identities = 99/142 (69%), Positives = 120/142 (84%)
Query: 22 KKKTPANK-MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITY 80
KK A K +SVE+IYQKK+QLEHILLRPDTYIGSVE +T+ MW+ + + + RE+T+
Sbjct: 7 KKNEDAKKRLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVG-INYREVTF 65
Query: 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
VPGLYKIFDEILVNA DNKQRDPKM+CI++T++ E N IS+WNNGKGIPVVEHK EKM+V
Sbjct: 66 VPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYV 125
Query: 141 PTMIFGHLLTSSNYNDEEDKVT 162
P +IFG LLTSSNY+D+E KVT
Sbjct: 126 PALIFGQLLTSSNYDDDEKKVT 147
>POMBASE|SPBC1347.01c [details] [associations]
symbol:rev1 "deoxycytidyl transferase Rev1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0005819 "spindle" evidence=IDA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0017125
"deoxycytidyl transferase activity" evidence=ISO] [GO:0043504
"mitochondrial DNA repair" evidence=IC] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISO] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 PomBase:SPBC1347.01c Pfam:PF00533 GO:GO:0005739
GO:GO:0005730 GO:GO:0005819 GO:GO:0000287 GO:GO:0003684
GO:GO:0006260 EMBL:CU329671 GenomeReviews:CU329671_GR SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003887 GO:GO:0043504
eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879 GO:GO:0017125
KO:K03515 RefSeq:NP_596693.2 ProteinModelPortal:O94623
IntAct:O94623 STRING:O94623 EnsemblFungi:SPBC1347.01c.1
GeneID:2539723 KEGG:spo:SPBC1347.01c OMA:FHIDFDC OrthoDB:EOG49PF6V
NextBio:20800875 Uniprot:O94623
Length = 935
Score = 311 (114.5 bits), Expect = 4.1e-46, Sum P(4) = 4.1e-46
Identities = 77/223 (34%), Positives = 117/223 (52%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ +S DE +D + + + A +R + ++T C S G G N L ARLA +K
Sbjct: 372 IKVISIDEALLDITSSVSSFQ-DCFEIAESIRSQVREKTNCEVSVGIGPNVLLARLALRK 430
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKL-NSLGAQTCGDLQNISLKRLQNE 2017
AKP+ + L+ + + D + + + DLPGVG S KL N G +T G LQ I LQ
Sbjct: 431 AKPHNVYSLSIENVFDVLSPLSVQDLPGVGSSQAQKLFNLYGVRTIGQLQRIEKFNLQET 490
Query: 2018 VGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKR 2077
G GL LY RG D + E R+S+S +VN+G+RF ++ FLK+L E+ R
Sbjct: 491 FGVNYGLHLYNISRGIDTDIINNETPRRSISVDVNWGVRFVFQEDGIDFLKRLLHELLSR 550
Query: 2078 LEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSS 2120
+ + ++ I L+++ R+ AP K+LG G TKSS+
Sbjct: 551 MGKCQVLLHQIQLRILKRADGAPFSPPKYLGAGEVTSFTKSST 593
Score = 149 (57.5 bits), Expect = 4.1e-46, Sum P(4) = 4.1e-46
Identities = 36/111 (32%), Positives = 61/111 (54%)
Query: 1338 NSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTT-- 1395
+ DS+ +F G+AI +NGYTK PS EL+ +++ +GG + Y +T+
Sbjct: 56 DEDSKSDLFHGLAIAINGYTK-----------PSYTELRQMIVSNGGTFIQYVDGKTSIS 104
Query: 1396 HIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYLLYTGTDAK 1446
+++ S L +K ++ K K++KPEWIVD I K+L Y + + A+
Sbjct: 105 YLVCSFLTPSKARQWKH-QKVVKPEWIVDCIKQKKILPWINYRTFQASSAQ 154
Score = 116 (45.9 bits), Expect = 4.1e-46, Sum P(4) = 4.1e-46
Identities = 25/64 (39%), Positives = 43/64 (67%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLN--IEAVSLYTNE 1736
R++G+ NGM+VG A CP+L++V YDF Y+ VS Y ++ + TL+ I+ +S+ +E
Sbjct: 323 RKFGIKNGMYVGTAKNLCPSLRVVDYDFGAYESVSREFYTILVN-TLHDYIKVISI--DE 379
Query: 1737 SFLN 1740
+ L+
Sbjct: 380 ALLD 383
Score = 109 (43.4 bits), Expect = 4.1e-46, Sum P(4) = 4.1e-46
Identities = 44/166 (26%), Positives = 69/166 (41%)
Query: 1486 TEESKSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDFLG 1545
++ S+ E N E+ ++ + + KTKESK + ASS N
Sbjct: 162 SKPSQPEG-NLEDIQTSSQEEEHDNEKDKTKESKAKGFLDDLSGLSASSLHNY------- 213
Query: 1546 EFYNKSRLHHLSTMGSMF-KQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFS 1604
+ + + +T F + + + R H ++ A K + T E +
Sbjct: 214 QLLKNPNVRNSTTQNQDFLENFFSSSRLHHLSTWK---ADFKNEIQAMTTASEPVRPIMK 270
Query: 1605 DNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS 1650
D S ++H+D DCFF SV R EL+ +PVAVAHG NS
Sbjct: 271 DKSKKSR---FLLHVDFDCFFASVSTRFSHELRLKPVAVAHGIKNS 313
Score = 99 (39.9 bits), Expect = 1.7e-23, Sum P(4) = 1.7e-23
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 2135 LLVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRG 2194
+L R+ AP K+LG G TKSS+ + I K+V + + VDP ++RG
Sbjct: 565 ILKRADGAPFSPPKYLGAGEVTSFTKSSTFTSATNSFDLIWKKVTSMYKTINVDPGDVRG 624
Query: 2195 IGIQVSKL 2202
IG+Q K+
Sbjct: 625 IGLQALKI 632
Score = 98 (39.6 bits), Expect = 1.6e-34, Sum P(3) = 1.6e-34
Identities = 38/155 (24%), Positives = 63/155 (40%)
Query: 1124 ESNLRPSADKAESRKRTQTSQGTESEERKGHLRRWRRKEEESTQTVQVELREGVNISAPK 1183
E NL ++ + T+ + KG L S Q+ + P
Sbjct: 168 EGNLEDIQTSSQEEEHDNEKDKTKESKAKGFLDDLSGLSASSLHNYQL-------LKNPN 220
Query: 1184 PQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQLISLQQDKQLPAIQVISIXX 1243
+ S+T+N +DFL F++ SRLHHLST + FK + Q ++ + P ++ S
Sbjct: 221 VRNSTTQN---QDFLENFFSSSRLHHLSTWKADFKNEI-QAMTTASEPVRPIMKDKSKKS 276
Query: 1244 XXXXXXXXXXTMGSMFKQYVNELREKHDGVFRGIE 1278
S+ ++ +ELR K V GI+
Sbjct: 277 RFLLHVDFDCFFASVSTRFSHELRLKPVAVAHGIK 311
Score = 91 (37.1 bits), Expect = 9.6e-23, Sum P(5) = 9.6e-23
Identities = 23/86 (26%), Positives = 53/86 (61%)
Query: 1806 HILS-SNV-SLQEMRTMLREWMCESQPEPS--DIEMFSEYLSNLV-EERHLNPIVILLRF 1860
HI++ +V SL+++R +L +W ++ P+ D+ F+ Y+ ++ EE++L ++L++
Sbjct: 837 HIVTFQHVQSLEDLRGLLTKWYSKASKGPNIHDVNYFANYVCRVIREEKNLGKAQMMLKW 896
Query: 1861 LRRHVGKKE-STVWAEAYQEMLSCVQ 1885
L + + +KE + W +A +++ VQ
Sbjct: 897 LYQ-LNRKECNKPWEKAIDKIIETVQ 921
Score = 50 (22.7 bits), Expect = 5.1e-16, Sum P(4) = 5.1e-16
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 1722 SLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEP 1770
S T+N V T L LP+D+++++L + + Q+S L E +P
Sbjct: 792 SKTINKPNVDYLT----LKELPKDLQKQILKESNLQKSDLISEVKLEKP 836
Score = 46 (21.3 bits), Expect = 9.6e-23, Sum P(5) = 9.6e-23
Identities = 18/67 (26%), Positives = 30/67 (44%)
Query: 1749 EVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPSPSPILDMSTSILDTTTSHIL 1808
++ D QS+ SR + + + + DI D + + SP L ST D +S +
Sbjct: 638 KIRKDYRSIQSITSRNKVSLKGASVDISSKDKEIISQKKQLSPKLIPSTPY-DLPSSSQI 696
Query: 1809 SSNVSLQ 1815
SS+ Q
Sbjct: 697 SSSALAQ 703
Score = 39 (18.8 bits), Expect = 2.1e-28, Sum P(3) = 2.1e-28
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 814 AKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDY-DYLLGMTFWSL 863
+KP + LE + + E E D +T+E + K + D L G++ SL
Sbjct: 162 SKPSQPEGNLEDIQTSSQEEEHDNEKDKTKESKA--KGFLDDLSGLSASSL 210
Score = 38 (18.4 bits), Expect = 2.6e-28, Sum P(3) = 2.6e-28
Identities = 13/50 (26%), Positives = 20/50 (40%)
Query: 429 LIVNPTFDSQTKENMTLQKGSFGSTCVPKLEDANDAGTKNSIDCTLILTE 478
L+ NP + T +N + F S+ + L A KN I +E
Sbjct: 215 LLKNPNVRNSTTQNQDFLENFFSSSRLHHLSTWK-ADFKNEIQAMTTASE 263
Score = 37 (18.1 bits), Expect = 1.0e-14, Sum P(4) = 1.0e-14
Identities = 12/53 (22%), Positives = 26/53 (49%)
Query: 1719 LIASLTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPL 1771
LI S ++ + S ++ S L LP ++ ++ L Q+ ++ + +PL
Sbjct: 682 LIPSTPYDLPSSSQISS-SALAQLPPSMQSDIQQQLRLQKRSITEYPSQLDPL 733
>CGD|CAL0001748 [details] [associations]
symbol:orf19.4412 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005819 "spindle" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0017125 "deoxycytidyl transferase activity"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0070987 "error-free translesion synthesis"
evidence=IEA] [GO:0042276 "error-prone translesion synthesis"
evidence=IEA] InterPro:IPR001126 InterPro:IPR012112
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PIRSF:PIRSF036573 PROSITE:PS50173 InterPro:IPR001357 CGD:CAL0001748
Pfam:PF00533 GO:GO:0000287 GO:GO:0003684 GO:GO:0006281
EMBL:AACQ01000179 EMBL:AACQ01000178 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0003887 eggNOG:COG0389 Gene3D:3.30.1490.100
SUPFAM:SSF100879 KO:K03515 RefSeq:XP_711860.1 RefSeq:XP_723600.1
ProteinModelPortal:Q59Q77 STRING:Q59Q77 GeneID:3646519
GeneID:3646539 KEGG:cal:CaO19.11890 KEGG:cal:CaO19.4412
Uniprot:Q59Q77
Length = 1113
Score = 356 (130.4 bits), Expect = 9.3e-46, Sum P(3) = 9.3e-46
Identities = 93/238 (39%), Positives = 135/238 (56%)
Query: 1902 VSCDEMYVD----C-SQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLAT 1956
VS DE+ VD C S + +SL + A+ +R+ + K T C S G +N L A+LA
Sbjct: 491 VSIDEVLVDATSYCHSGVSDSVSLVN-ELATRIRKDVFKLTNCPVSVGASTNVLLAKLAL 549
Query: 1957 KKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCG----DLQNISLK 2012
+KAKPNGQF+L I F+ +I + DLPG G +L KLNS Q+ D+ IS +
Sbjct: 550 RKAKPNGQFYLFDDI-EKFLESIYIKDLPGFGRGILEKLNS-EIQSSNPQIKDVVTISKQ 607
Query: 2013 RLQNEVGNKNGLTLYKHCRGEDDKELTFEHQ-------RKSVSAEVNYGIRFQNNQEMET 2065
RL +G K G L+++ RG D+ + + RKSVS +VN+GIRF +E++
Sbjct: 608 RLVQLLGEKTGTKLFEYARGMDETSIEIDTNNPEAVLGRKSVSVDVNFGIRFDTVEELDD 667
Query: 2066 FLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPI 2123
FL +L+ E+ +RL + + G +TLKL R+ A KFLG G CD++ KSS L +
Sbjct: 668 FLMRLSRELYQRLVSLGICGSSLTLKLAKRAEGASINPPKFLGMGRCDFVNKSSKLGV 725
Score = 171 (65.3 bits), Expect = 9.3e-46, Sum P(3) = 9.3e-46
Identities = 65/221 (29%), Positives = 92/221 (41%)
Query: 1345 IFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHY--ESSRTTHIIASNL 1402
IF+G +IFVNG+T PS E+ L++LHGG + Y S THI+ L
Sbjct: 147 IFKGCSIFVNGHTN-----------PSITEIHRLVILHGGQFVSYMVNKSSVTHIVCDRL 195
Query: 1403 PHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKY--LLYTGTDAKPLTKLLQKSYFENT 1460
K + K +++K +WIVDS++ LLD Y + D + L Q + E+
Sbjct: 196 TPRKSIQFK-NCRVVKAQWIVDSVAQQTLLDWTLYRSISEVAYDQRRLDFAKQSTIEESK 254
Query: 1461 E--APCCSKXXXXXXXXXXXXXXXXDNTEE-SKSEAVNSEESKSEA-ANPIESKQTVKTK 1516
E C + DN + KS+ + + K E E V T
Sbjct: 255 EINGECENNKEEDLDGEINSSLFGEDNADFLDKSQELETFFEKREGLVQEPEEDLPVVTD 314
Query: 1517 ESKLETVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLS 1557
E I K +A + DFL F+ SRLHHLS
Sbjct: 315 EPPQSGKGIH--KVNNKYVLDARHPDFLPNFFANSRLHHLS 353
Score = 131 (51.2 bits), Expect = 1.4e-41, Sum P(3) = 1.4e-41
Identities = 72/310 (23%), Positives = 125/310 (40%)
Query: 1358 KHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKKLKPGD--- 1414
K C + + PS E+ L++LHGG + Y ++ S++ H +L P
Sbjct: 149 KGCSIFVNGHTNPSITEIHRLVILHGGQFVSYMVNK------SSVTHIVCDRLTPRKSIQ 202
Query: 1415 ----KIIKPEWIVDSISAGKLLDHKKYLLYTGTDAKPLTKLLQKSYFENTEAPCCSKXXX 1470
+++K +WIVDS++ LLD + LY + + + ++ +
Sbjct: 203 FKNCRVVKAQWIVDSVAQQTLLD---WTLY---------RSISEVAYDQRRLDFAKQSTI 250
Query: 1471 XXXXXXXXXXXXXDNTEESKSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKP 1530
+N EE +NS + A+ ++ Q ++T K E + + P+
Sbjct: 251 EESKEINGECE--NNKEEDLDGEINSSLFGEDNADFLDKSQELETFFEKREGL-VQEPEE 307
Query: 1531 QASSTKNASNEDFLGEFYNKSRLHHLSTMGSMF-KQYVNELREKHDGVFRGIEAIRKWKT 1589
+ + G + + + L F + R H V++ A + K
Sbjct: 308 DLPVVTDEPPQSGKG-IHKVNNKYVLDARHPDFLPNFFANSRLHHLSVWK---ADLRLKF 363
Query: 1590 SLGITEDEDLEETFS--DNP--SPSEPEPVIMHIDMDCFFVSVGIRHHPELQDE--PVAV 1643
I + E L + S NP P E + VIMHID DCFF + P+L P+AV
Sbjct: 364 LRRIVK-ERLHQPASHFQNPFIDPGEKK-VIMHIDFDCFFATASCLKRPDLDSSKHPIAV 421
Query: 1644 AHGKGNSSKV 1653
+HG G +S +
Sbjct: 422 SHG-GKTSDI 430
Score = 108 (43.1 bits), Expect = 9.3e-46, Sum P(3) = 9.3e-46
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLI 1720
R+YG+ NGM++ A K CP+L ++PY+FE Y++ S YN +
Sbjct: 438 RKYGVKNGMWLMQATKLCPDLILLPYEFESYEKFSSEFYNYL 479
Score = 103 (41.3 bits), Expect = 7.3e-19, Sum P(4) = 7.3e-19
Identities = 28/70 (40%), Positives = 37/70 (52%)
Query: 2134 LLLVRSAE-APREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVEL 2192
L L + AE A KFLG G CD++ KSS L + + I EV + + + EL
Sbjct: 692 LKLAKRAEGASINPPKFLGMGRCDFVNKSSKLGVPTNDWGIIGNEVKVLYRMVNIPVKEL 751
Query: 2193 RGIGIQVSKL 2202
RGI I +SKL
Sbjct: 752 RGISITISKL 761
Score = 85 (35.0 bits), Expect = 4.4e-17, Sum P(3) = 4.4e-17
Identities = 32/175 (18%), Positives = 76/175 (43%)
Query: 1737 SFLNALPEDIRQEVLDDLSRQQSVLSREQ-NTTEPLAQDIICADSHTLVRTPSPSPILDM 1795
S LN LP I++ V+ D+ ++ + + + + LAQ + ++ + S L
Sbjct: 929 SVLNELPSSIKESVIRDVEYKEKIKKFDLVSMRDKLAQKL---ENKKVPVNEVTSDWLKS 985
Query: 1796 STSILDTTTSHILSSNVSLQEMRTMLREW----MCESQPEPSDIEMFSEYLSNLVEERHL 1851
+ T L+ + E+ L +W + + P D++ F+ ++ +++
Sbjct: 986 QEKL--NKTPLFLNEQLKDNELSVKLDDWVKSSLLQGGPHEEDMDYFALFVQTMLQRDQF 1043
Query: 1852 NPIVILLRFLRRHVGKKESTVWAEAY--QEMLSCVQSAMKHKPSSESKIVSAVSC 1904
N +++LLR L+ + ++ + + + +E L +S ++K+ V C
Sbjct: 1044 NRVLLLLRRLKERLKYHKTLINCQVFNEEEYLVYEESFEDWYKQLDNKVQPLVDC 1098
Score = 65 (27.9 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
Identities = 24/80 (30%), Positives = 37/80 (46%)
Query: 1132 DKAESRKRTQTSQGTESEERKGHLRRWRRKEEESTQTVQVELREGVNISAPKPQASSTKN 1191
D A+ ++Q + T E+R+G ++ EE+ + G I K +
Sbjct: 280 DNADFLDKSQELE-TFFEKREGLVQE---PEEDLPVVTDEPPQSGKGIH--KVNNKYVLD 333
Query: 1192 ASNEDFLGEFYNKSRLHHLS 1211
A + DFL F+ SRLHHLS
Sbjct: 334 ARHPDFLPNFFANSRLHHLS 353
Score = 51 (23.0 bits), Expect = 1.2e-13, Sum P(4) = 1.2e-13
Identities = 31/136 (22%), Positives = 61/136 (44%)
Query: 1976 MLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDD 2035
M+NIP+ +L G+ ++ +++ G ++ ++ K N + ++ L K +D+
Sbjct: 743 MVNIPVKELRGISITISKLVDAEGVKSNKQMRLPFKKAESNALSVRDLKQLQKMSDSKDN 802
Query: 2036 K--ELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL-EEVKMKGKC-ITLK 2091
K +L F Q S E + + + E F K L EV L +E+K + K + +
Sbjct: 803 KSQKLIFSKQ----SPEKRHVNKVLISHEFADF-KSLDWEVFHVLPDEIKSELKVELRRR 857
Query: 2092 LMVRSAEAPREASKFL 2107
M+ P + +L
Sbjct: 858 GMLSEKSTPTKGKTYL 873
Score = 48 (22.0 bits), Expect = 7.3e-19, Sum P(4) = 7.3e-19
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 1799 ILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVE 1847
IL+ S I SSN ++++ T+ ++ + + E + ++F EY + E
Sbjct: 583 ILEKLNSEIQSSNPQIKDVVTISKQRLVQLLGEKTGTKLF-EYARGMDE 630
Score = 42 (19.8 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 1740 NALPEDIRQEVLDDLSRQQSVLSREQNTTE 1769
+ LP++I+ E+ +L R++ +LS + T+
Sbjct: 840 HVLPDEIKSELKVEL-RRRGMLSEKSTPTK 868
Score = 42 (19.8 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 13/52 (25%), Positives = 30/52 (57%)
Query: 1809 SSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLNPIVILLRF 1860
S+ +S+++++ + + M +S+ S +FS+ E+RH+N ++I F
Sbjct: 782 SNALSVRDLKQLQK--MSDSKDNKSQKLIFSKQSP---EKRHVNKVLISHEF 828
Score = 38 (18.4 bits), Expect = 4.6e-26, Sum P(2) = 4.6e-26
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 1737 SFLNALPEDIRQEVLDDLSRQQSVLSRE 1764
SFL +L ++ + DL++Q S +R+
Sbjct: 15 SFLRSLDDESFITHIQDLNKQHSQKNRQ 42
>SGD|S000005873 [details] [associations]
symbol:REV1 "Deoxycytidyl transferase" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0017125 "deoxycytidyl
transferase activity" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA;IDA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0005657 "replication
fork" evidence=IPI] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0070987 "error-free translesion synthesis" evidence=IMP;IDA]
[GO:0042276 "error-prone translesion synthesis"
evidence=IGI;IMP;IDA] InterPro:IPR001126 InterPro:IPR012112
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PIRSF:PIRSF036573 PROSITE:PS50173 InterPro:IPR001357 SGD:S000005873
Pfam:PF00533 GO:GO:0005739 GO:GO:0005634 EMBL:BK006948
GO:GO:0000287 GO:GO:0003684 GO:GO:0006260 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0005657 GO:GO:0003887
EMBL:X95720 GO:GO:0070987 GO:GO:0042276 eggNOG:COG0389
Gene3D:3.30.1490.100 SUPFAM:SSF100879 GO:GO:0017125
GeneTree:ENSGT00530000062942 KO:K03515 OMA:FHIDFDC
OrthoDB:EOG49PF6V EMBL:M22222 EMBL:Z75253 PIR:S67255
RefSeq:NP_014991.1 PDB:2AQ4 PDB:2M2I PDB:3BJY PDB:3OSP PDB:4ID3
PDBsum:2AQ4 PDBsum:2M2I PDBsum:3BJY PDBsum:3OSP PDBsum:4ID3
ProteinModelPortal:P12689 SMR:P12689 DIP:DIP-1000N IntAct:P12689
MINT:MINT-2732340 STRING:P12689 PaxDb:P12689 EnsemblFungi:YOR346W
GeneID:854527 KEGG:sce:YOR346W CYGD:YOR346w HOGENOM:HOG000141717
EvolutionaryTrace:P12689 NextBio:976907 Genevestigator:P12689
GermOnline:YOR346W Uniprot:P12689
Length = 985
Score = 314 (115.6 bits), Expect = 6.2e-45, Sum P(4) = 6.2e-45
Identities = 83/230 (36%), Positives = 131/230 (56%)
Query: 1929 LRETIAKET-GCTCSTGFGSNKLQARLATKKAKPNGQFHLT--PQIISDFMLNIPLSDLP 1985
+R+ I + T GCT S G + + ARLA K AKPNG +++T + +F + L DLP
Sbjct: 493 IRQEIFQGTNGCTVSIGCSDSLVLARLALKMAKPNG-YNITFKSNLSEEFWSSFKLDDLP 551
Query: 1986 GVGHSLLFKLNSL--GAQTCGDLQN-ISLKRLQNEVGNKNGLTLYKHCRGEDDKE---LT 2039
GVGHS L +L S + DL+ +L L+ VG+K G+ ++ +G+DD+E +
Sbjct: 552 GVGHSTLSRLESTFDSPHSLNDLRKRYTLDALKASVGSKLGMKIHLALQGQDDEESLKIL 611
Query: 2040 FEH----QRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVR 2095
++ QRKS+S ++N+GIRF+N +++ F+++ + ++L E+ ITLKLM R
Sbjct: 612 YDPKEVLQRKSLSIDINWGIRFKNITQVDLFIERGCQYLLEKLNEINKTTSQITLKLMRR 671
Query: 2096 SAEAPREASKFLGHGVCDYITKSSSL--PIYERPLIITYFLLLVRSAEAP 2143
+AP E K++G G CD ++SS L P E +I T L R+ P
Sbjct: 672 CKDAPIEPPKYMGMGRCDSFSRSSRLGIPTNEFGIIATEMKSLYRTLGCP 721
Score = 173 (66.0 bits), Expect = 6.2e-45, Sum P(4) = 6.2e-45
Identities = 44/119 (36%), Positives = 71/119 (59%)
Query: 1329 LEEQFELEANSDSRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHH 1388
L++Q++ + +S S IF+ I++NGYTK P +L +++LHGG + H
Sbjct: 150 LKDQYKDQISSQS-SKIFKNCVIYINGYTK-----------PGRLQLHEMIVLHGGKFLH 197
Query: 1389 YESSR--TTHIIASNLPHTKIKKLKPGD-KIIKPEWIVDSISAGKLLDHKKYLLYTGTD 1444
Y SS+ THI+ASNLP K K+++ + K++ P+WIVDS+ +LL + Y L + D
Sbjct: 198 YLSSKKTVTHIVASNLP-LK-KRIEFANYKVVSPDWIVDSVKEARLLPWQNYSLTSKLD 254
Score = 119 (46.9 bits), Expect = 3.3e-24, Sum P(4) = 3.3e-24
Identities = 53/209 (25%), Positives = 91/209 (43%)
Query: 2029 HCRGEDDKELTFEHQRKSVSAEVNYGIRFQ-NNQEMETFLKQLAGEVEKRLEEVKMKGKC 2087
H + K T + + SV +++ I Q+ E LK L + + E ++ K
Sbjct: 569 HSLNDLRKRYTLDALKASVGSKLGMKIHLALQGQDDEESLKIL---YDPK-EVLQRKSLS 624
Query: 2088 ITLKLMVRSAEAPREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREAS 2147
I + +R + F+ G C Y+ + + I + IT L+ R +AP E
Sbjct: 625 IDINWGIRFKNIT-QVDLFIERG-CQYLLEKLN-EINKTTSQIT-LKLMRRCKDAPIEPP 680
Query: 2148 KFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSKL----- 2202
K++G G CD ++SS L + ++ I E+ + L P+ELRG+ +Q +KL
Sbjct: 681 KYMGMGRCDSFSRSSRLGIPTNEFGIIATEMKSLYRTLGCPPMELRGLALQFNKLVDVGP 740
Query: 2203 -EHQSKTLATIDTFFTNKGKP--PDQLNN 2228
+Q K T TN+ P+ + N
Sbjct: 741 DNNQLKLRLPFKTIVTNRAFEALPEDVKN 769
Score = 115 (45.5 bits), Expect = 6.2e-45, Sum P(4) = 6.2e-45
Identities = 50/204 (24%), Positives = 85/204 (41%)
Query: 1587 WKTSLGITEDEDLEETFSDNPSPSEPEP-VIMHIDMDCFFVSVGIRHHPELQDEPVAVAH 1645
WK +L +D+ L E ++ + +I HID DCFF +V + +
Sbjct: 331 WKANL---KDKFLNENIHKYTKITDKDTYIIFHIDFDCFFATVAYL----CRSSSFSACD 383
Query: 1646 GKGNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPN-LKIV-- 1702
K + V G DI + N + R YG+ NGM+V A K PN +K++
Sbjct: 384 FKRDPIVVCHGTKNS---DI---ASCNYVA---RSYGIKNGMWVSQAEKMLPNGIKLISL 434
Query: 1703 PYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESF-LNALPEDIRQEVLDDLSRQQSVL 1761
PY FE ++ S Y+ + L + + + +E+ + +P++I + + +
Sbjct: 435 PYTFEQFQLKSEAFYSTLKRLNIFNLILPISIDEAVCVRIIPDNIHNTNTLNARLCEEIR 494
Query: 1762 SREQNTTEPLAQDIICADSHTLVR 1785
T I C+DS L R
Sbjct: 495 QEIFQGTNGCTVSIGCSDSLVLAR 518
Score = 73 (30.8 bits), Expect = 6.2e-45, Sum P(4) = 6.2e-45
Identities = 25/92 (27%), Positives = 43/92 (46%)
Query: 1484 DNTEESKSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTKNASNEDF 1543
DN + S + SE S + + + S ++S + N+ A + A + DF
Sbjct: 261 DNCKTVNSIPLPSETSLHKGSKCVGSALLPVEQQSPVNLNNLEAKRIVA-----CDDPDF 315
Query: 1544 LGEFYNKSRLHHLSTMGSMFK-QYVNELREKH 1574
L ++ SRLHHLS + K +++NE K+
Sbjct: 316 LTSYFAHSRLHHLSAWKANLKDKFLNENIHKY 347
Score = 73 (30.8 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 27/130 (20%), Positives = 54/130 (41%)
Query: 1736 ESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPSPSPILDM 1795
E F+N LP IR EV DL Q+ + Q T Q+ I +L + +
Sbjct: 815 EQFMNELPTQIRAEVRHDLRIQKKI----QQTKLGNLQEKIKRREESLQN--EKNHFMGQ 868
Query: 1796 STSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLNPIV 1855
++ ++ Q ++ + E + + P D+++F +YL L + ++ ++
Sbjct: 869 NSIFQPIKFQNLTRFKKICQLVKQWVAETLGDGGPHEKDVKLFVKYLIKLCDSNRVHLVL 928
Query: 1856 ILLRFLRRHV 1865
L + R +
Sbjct: 929 HLSNLISREL 938
Score = 67 (28.6 bits), Expect = 4.3e-12, Sum P(3) = 4.3e-12
Identities = 21/87 (24%), Positives = 43/87 (49%)
Query: 1672 NRMGLNTREYGL-GNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAV 1730
+R+G+ T E+G+ M + CP +++ + K V N L L +
Sbjct: 695 SRLGIPTNEFGIIATEMKSLYRTLGCPPMELRGLALQFNKLVDVGPDN--NQLKLRLPFK 752
Query: 1731 SLYTNESFLNALPEDIRQEVLDDLSRQ 1757
++ TN +F ALPED++ ++ ++ ++
Sbjct: 753 TIVTNRAF-EALPEDVKNDINNEFEKR 778
Score = 65 (27.9 bits), Expect = 3.3e-31, Sum P(3) = 3.3e-31
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 1171 VELREGVNISAPKPQASSTKNASNEDFLGEFYNKSRLHHLSTMGSMFK-QYVNQLI 1225
VE + VN++ +A + DFL ++ SRLHHLS + K +++N+ I
Sbjct: 291 VEQQSPVNLN--NLEAKRIVACDDPDFLTSYFAHSRLHHLSAWKANLKDKFLNENI 344
Score = 49 (22.3 bits), Expect = 4.1e-17, Sum P(4) = 4.1e-17
Identities = 34/147 (23%), Positives = 60/147 (40%)
Query: 1835 IEMFSEYLSNLVEERHLNPIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHK--- 1891
IE +YL + E + I L+ +RR K++ + Y M C + +
Sbjct: 643 IERGCQYLLEKLNEINKTTSQITLKLMRRC---KDAPIEPPKYMGMGRCDSFSRSSRLGI 699
Query: 1892 PSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQ 1951
P++E I++ EM L + L P++ LR +A + G +N+L+
Sbjct: 700 PTNEFGIIAT----EM----KSLYRTLGCPPME----LRG-LALQFNKLVDVGPDNNQLK 746
Query: 1952 ARLATKKAKPNGQFHLTPQIISDFMLN 1978
RL K N F P+ + + + N
Sbjct: 747 LRLPFKTIVTNRAFEALPEDVKNDINN 773
Score = 48 (22.0 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 21/87 (24%), Positives = 38/87 (43%)
Query: 1497 EESKSEAANPIESKQTVKTKESKLETVNISAPKP-------QASSTKNASNEDFLGEFYN 1549
E+ K++ N E K+ K KES L + ++S+ K + + + E F+ E
Sbjct: 765 EDVKNDINNEFE-KRNYKRKESGLTSNSLSSKKKGFAISRLEVNDLPSTMEEQFMNELPT 823
Query: 1550 KSRL---HHLSTMGSMFKQYVNELREK 1573
+ R H L + + + L+EK
Sbjct: 824 QIRAEVRHDLRIQKKIQQTKLGNLQEK 850
Score = 43 (20.2 bits), Expect = 7.1e-21, Sum P(3) = 7.1e-21
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 1737 SFLNALPEDIRQEVLDDLSRQQSVLSREQ-NTTEPLAQDIICADSHTLVRTPSPSPI 1792
SFL+ L +D E ++ LS+ S T ++I C + H + SPI
Sbjct: 51 SFLSTLSDDSLIEYVNQLSQTNKNNSNPTAGTLRFTTKNISCDELHADLGGGEDSPI 107
Score = 37 (18.1 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 1902 VSCDEMYVD 1910
+SCDE++ D
Sbjct: 90 ISCDELHAD 98
Score = 37 (18.1 bits), Expect = 7.1e-21, Sum P(3) = 7.1e-21
Identities = 11/53 (20%), Positives = 29/53 (54%)
Query: 1803 TTSHILSSNVSLQEM------RTMLREWMCESQPEPSDIEMFSEYLSNLVEER 1849
T +HI++SN+ L++ + + +W+ +S E + + L++ ++E+
Sbjct: 204 TVTHIVASNLPLKKRIEFANYKVVSPDWIVDSVKEARLLPWQNYSLTSKLDEQ 256
>TAIR|locus:2156319 [details] [associations]
symbol:REV1 species:3702 "Arabidopsis thaliana"
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA;IDA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281 "DNA
repair" evidence=IEA;ISS] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0010224 "response to UV-B"
evidence=IMP] [GO:0007155 "cell adhesion" evidence=RCA] [GO:0010090
"trichome morphogenesis" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0045010
"actin nucleation" evidence=RCA] [GO:0050665 "hydrogen peroxide
biosynthetic process" evidence=RCA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000287 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 GO:GO:0006974 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0010224 GO:GO:0003887 eggNOG:COG0389
Gene3D:3.30.1490.100 SUPFAM:SSF100879 EMBL:AB016874 EMBL:AC002342
EMBL:AB187523 EMBL:EF016093 EMBL:EF016094 EMBL:EF016095
EMBL:EF016096 EMBL:EF016097 EMBL:EF016098 EMBL:AY080825
IPI:IPI00517369 IPI:IPI00554422 IPI:IPI00837466 IPI:IPI00891315
RefSeq:NP_001119373.1 RefSeq:NP_199288.4 UniGene:At.30056
ProteinModelPortal:A3EWL3 SMR:A3EWL3 STRING:A3EWL3 PRIDE:A3EWL3
EnsemblPlants:AT5G44750.2 GeneID:834504 KEGG:ath:AT5G44750
TAIR:At5g44750 HOGENOM:HOG000246421 KO:K03515 OMA:TIPYDFD
PhylomeDB:A3EWL3 ProtClustDB:CLSN2681660 Genevestigator:A3EWL3
Uniprot:A3EWL3
Length = 1105
Score = 406 (148.0 bits), Expect = 3.4e-32, Sum P(4) = 3.4e-32
Identities = 95/252 (37%), Positives = 147/252 (58%)
Query: 1875 EAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIA 1934
EAY+E+ + H+ + V A+SCDE ++D S L ++ L AS +R I
Sbjct: 450 EAYEEVADQFYDIL-HR---HCRKVQALSCDEAFLDVSDL-SDVETEVL--ASTIRNEIL 502
Query: 1935 KETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFK 1994
+ TGC+ S G G L ARLAT+ AKP GQ +++ + + +F+ +P+ LPGVG L K
Sbjct: 503 ETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFLDQLPVGTLPGVGSVLKEK 562
Query: 1995 LNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYG 2054
L QTCG L+ IS LQ + G K G L+ + RG D + +T + KS+ AEVN+G
Sbjct: 563 LVKQNIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDLRSVTAVQESKSIGAEVNWG 622
Query: 2055 IRFQNNQEM----ETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHG 2110
+RF++ Q++ + FL+ L EV RL+ +M G+ TLK+ R +A E +K++G G
Sbjct: 623 VRFRDQQDVFILVQHFLQCLCKEVSLRLQGCEMIGRTFTLKIKKRKKDA-EEPTKYMGCG 681
Query: 2111 VCDYITKSSSLP 2122
CD +++S ++P
Sbjct: 682 DCDNLSRSITVP 693
Score = 393 (143.4 bits), Expect = 3.9e-36, Sum P(3) = 3.9e-36
Identities = 154/496 (31%), Positives = 238/496 (47%)
Query: 1329 LEEQFELEANSDSRG--G----IFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLH 1382
L+ QFE EA++ SRG G IFQGV+IFV+G+T +PS +ELK MM +
Sbjct: 65 LQNQFETEASAASRGVSGSEKLIFQGVSIFVDGFT-----------IPSHQELKGYMMKY 113
Query: 1383 GGIYHHYESSRT-THIIASNLPHTKIKKLKP---GDKIIKPEWIVDSISAGKLLDHKKYL 1438
GG + +Y S R+ THII SNLP +K+K L+ G ++KP WIVDSISA +LL Y
Sbjct: 114 GGRFENYFSRRSVTHIICSNLPDSKVKNLRTFSRGLPVVKPTWIVDSISANRLLGWVPYQ 173
Query: 1439 LYTGTDAKP-LTKLLQ-KSYFENTEA-PCCS-KXXXXXXXXXXXXXXXXDNTEESKSEAV 1494
L D +P L+ +S+ A P S + D++EE++
Sbjct: 174 LDQLNDTQPKLSAFFAPRSHLTPQMASPVTSFQPDTGYSEAEEGSSIRADDSEEARDHID 233
Query: 1495 NSEESKS-EAANPIESKQT----VKTKESKLETV-NISAPKPQASS----TKNA-SNEDF 1543
+ + E P ++QT +K+ E E + N + + SS T N S D
Sbjct: 234 DEIDGVYIENTTPELTEQTGTGDLKSSEMNAEGLGNYDIEEKEVSSELQSTTNLHSTSDN 293
Query: 1544 LGEFYN-KSRLHHLSTM-GSMFKQYVNELREKH--DGVFRG--IEAIRKWKTSLGIT--- 1594
N K+ ++T GS +++ + L + + + F+ + I W+
Sbjct: 294 KSVHANGKNGGKSIATAAGSSTRRH-STLEDPNFVENYFKNSRLHFIGTWRNRYRKRFHG 352
Query: 1595 EDEDLEETFS-DNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKV 1653
L+ S N + + I+HID+DCFFVSV I++ EL D+PVAV H ++ K
Sbjct: 353 SSNGLKWADSGQNTAEMAKKSTIIHIDLDCFFVSVVIKNRLELHDKPVAVCHS--DNPK- 409
Query: 1654 REGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVS 1713
G AE ++ R YG+ GMFV HA CP L IVPY+FE Y+EV+
Sbjct: 410 --GT---AE--------ISSANYPARAYGVKAGMFVRHAKDLCPQLVIVPYNFEAYEEVA 456
Query: 1714 YCLYNLIASLTLNIEAVSLYTNESFLNALP-EDIRQEVLDDLSRQQSVLSREQNTTEPLA 1772
Y+++ ++A+S +E+FL+ D+ EVL R + + + + + +
Sbjct: 457 DQFYDILHRHCRKVQALSC--DEAFLDVSDLSDVETEVLASTIRNEILETTGCSASAGIG 514
Query: 1773 QDIICADSHTLVRTPS 1788
++ A T V P+
Sbjct: 515 GTMLMARLATRVAKPA 530
Score = 95 (38.5 bits), Expect = 3.9e-36, Sum P(3) = 3.9e-36
Identities = 23/75 (30%), Positives = 43/75 (57%)
Query: 2131 TYFLLLVRSAEAPREASKFLGHGVCDYITKSSSLPMYIS--QASQILKEVLFIVNKLKVD 2188
T+ L + + + E +K++G G CD +++S ++P + Q + + LF +D
Sbjct: 659 TFTLKIKKRKKDAEEPTKYMGCGDCDNLSRSITVPAATDDIEVLQRISKKLF--GSFCLD 716
Query: 2189 PVELRGIGIQVSKLE 2203
E+RG+G+QVSKL+
Sbjct: 717 VKEVRGVGLQVSKLD 731
Score = 53 (23.7 bits), Expect = 3.9e-36, Sum P(3) = 3.9e-36
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 2213 DTFFTNKGKPPDQLNNPRPGPSNSTITPGPSNSTLPPGPSNSTLPP 2258
D F K + N P G + S++ G +NS+LPP
Sbjct: 760 DNVFAAKVRENSDCNRPVTGGVSRLRESNSEESSIQSGDTNSSLPP 805
Score = 51 (23.0 bits), Expect = 3.4e-32, Sum P(4) = 3.4e-32
Identities = 16/76 (21%), Positives = 35/76 (46%)
Query: 1147 ESEERKGHLRRWRRKEEES-TQTVQVELREGVNISAPKPQASSTKNASNED--FLGEFYN 1203
E +E L+ S ++V + G A +S+ ++++ ED F+ ++
Sbjct: 273 EEKEVSSELQSTTNLHSTSDNKSVHANGKNGGKSIATAAGSSTRRHSTLEDPNFVENYFK 332
Query: 1204 KSRLHHLSTMGSMFKQ 1219
SRLH + T + +++
Sbjct: 333 NSRLHFIGTWRNRYRK 348
Score = 40 (19.1 bits), Expect = 3.4e-32, Sum P(4) = 3.4e-32
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 193 YGAKLCNIFSSKFVVETSCSEYKKS 217
YG + N FS + V CS S
Sbjct: 113 YGGRFENYFSRRSVTHIICSNLPDS 137
Score = 38 (18.4 bits), Expect = 4.8e-30, Sum P(2) = 4.8e-30
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 2001 QTCG--DLQNISLKRLQNEVG 2019
+TC D + I LK +NE+G
Sbjct: 950 ETCKKQDEEPIDLKGTENEIG 970
Score = 37 (18.1 bits), Expect = 6.1e-30, Sum P(2) = 6.1e-30
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 1867 KKESTVWAEAYQE--MLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQE 1917
+K S ++ + Q MLS V + SS SA D+ D +LL++
Sbjct: 997 EKLSAIYFKVAQSRPMLSLVLQHAISEMSSFPDAASASDLDKAIYDVCELLKQ 1049
>UNIPROTKB|Q4G402 [details] [associations]
symbol:TOP2B "DNA topoisomerase II beta" species:9544
"Macaca mulatta" [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0003682 "chromatin binding" evidence=IBA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IBA] [GO:0005080 "protein kinase C binding" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0042826 "histone deacetylase
binding" evidence=IBA] [GO:0071778 "WINAC complex" evidence=IBA]
[GO:0009295 "nucleoid" evidence=IBA] InterPro:IPR001241
InterPro:IPR013506 Pfam:PF00204 SMART:SM00433 GO:GO:0005829
GO:GO:0005524 GO:GO:0001764 GO:GO:0005080 GO:GO:0005654
GO:GO:0030900 GO:GO:0003682 GO:GO:0006261 GO:GO:0007409
GO:GO:0042826 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0000819 GO:GO:0006312
GO:GO:0000792 GO:GO:0071778 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 eggNOG:COG0187
HOGENOM:HOG000216693 OrthoDB:EOG4640B2 EMBL:AY680449
UniGene:Mmu.9538 STRING:Q4G402 InParanoid:Q4G402 BindingDB:Q4G402
Uniprot:Q4G402
Length = 185
Score = 208 (78.3 bits), Expect = 5.8e-33, Sum P(2) = 5.8e-33
Identities = 37/45 (82%), Positives = 41/45 (91%)
Query: 410 GMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC 454
G+++KPFQVKNHIW+FINCLI NPTFDSQTKENMTLQ SFGS C
Sbjct: 79 GVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKC 123
Score = 200 (75.5 bits), Expect = 5.8e-33, Sum P(2) = 5.8e-33
Identities = 39/62 (62%), Positives = 48/62 (77%)
Query: 298 YVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAV 356
YV LY D+ DE G +K+I+E N RW+V + S++GFQQ+SFVNSIATTKGGRHVD V
Sbjct: 1 YVDLYVKDKLDETGVALKVIHELANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYV 60
Query: 357 VD 358
VD
Sbjct: 61 VD 62
Score = 69 (29.3 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 435 FDSQTKENMTLQKGSFGSTC-VPKLEDANDAGTKNSID 471
F +QT+ N + +PKL+DANDAG K+S++
Sbjct: 148 FKAQTQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLE 185
>WB|WBGene00021604 [details] [associations]
symbol:Y46H3C.4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR002205
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 SMART:SM00434 GO:GO:0005524 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0006261
GO:GO:0000819 GO:GO:0006312 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 eggNOG:COG0188 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10 KO:K03164
GeneTree:ENSGT00390000016222 EMBL:FO081587 RefSeq:NP_503483.2
UniGene:Cel.28200 ProteinModelPortal:Q9N4W3 SMR:Q9N4W3 PaxDb:Q9N4W3
EnsemblMetazoa:Y46H3C.4 GeneID:189967 KEGG:cel:CELE_Y46H3C.4
UCSC:Y46H3C.4 CTD:189967 WormBase:Y46H3C.4 InParanoid:Q9N4W3
OMA:KDSASAQ NextBio:944220 Uniprot:Q9N4W3
Length = 616
Score = 283 (104.7 bits), Expect = 1.4e-31, Sum P(3) = 1.4e-31
Identities = 51/81 (62%), Positives = 60/81 (74%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPEWY PI PMVLVNGA+GI TGW T IPN+NPRE+V NIKR+I GE + PWYKN
Sbjct: 182 RIEPEWYCPISPMVLVNGAQGIDTGWRTNIPNYNPRELVKNIKRLIAGEPQKALAPWYKN 241
Query: 719 FKGEIDYCGDSRFVVNGEIAI 739
F+G+I RF GE+A+
Sbjct: 242 FRGKIIQIDPRRFACYGEVAL 262
Score = 161 (61.7 bits), Expect = 1.4e-31, Sum P(3) = 1.4e-31
Identities = 46/140 (32%), Positives = 71/140 (50%)
Query: 810 DNELAKPQKTGPQLERQERQAAEGEDDEA-GSQTQEEEDPDKDYDYLLGMTFWSLTMERK 868
+ + K +++G +++ + EDDE S + E Y+YL GMT ++ E
Sbjct: 363 EEQKLKLRESG-EMDEDDLATVAVEDDEGVSSAAKAVETKLSGYEYLFGMTILDVSEEET 421
Query: 869 NELLKKRDDKMTELNILKKKAPTDLWSDDLDA-LREKDKIHPCPGGNRTRGL--ALKRQT 925
N+L+ + ++KMTEL +LKKK DLW +DLD L E DK G++ L A+K+
Sbjct: 422 NKLINESEEKMTELRVLKKKTWQDLWHEDLDNFLSELDKQEARERGDQDAMLENAVKKLA 481
Query: 926 RYQPSNRVLTSRDEPMVVSS 945
S R T P V+ S
Sbjct: 482 ADAKSGRGSTKNVCPEVLPS 501
Score = 56 (24.8 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
Identities = 21/51 (41%), Positives = 26/51 (50%)
Query: 1149 EERKGHLRRWRRKEEESTQTVQVELREGVNISAPKPQASSTKNASNEDFLG 1199
EE+K LR +E+ TV VE EGV+ SA K A TK + E G
Sbjct: 363 EEQKLKLRESGEMDEDDLATVAVEDDEGVS-SAAK--AVETKLSGYEYLFG 410
Score = 44 (20.5 bits), Expect = 7.1e-20, Sum P(2) = 7.1e-20
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 2036 KELTFEHQRKSVSAEVNYGIRFQNNQEM---ETFLKQL--AGEVEKRLEEVKMK 2084
K LT +Q + + A++N I F+N +++ + +K A V+K EE K+K
Sbjct: 317 KRLT--NQARFILAKINKEIVFENKKKVAIVDDLIKMGFDADPVKKWKEEQKLK 368
Score = 43 (20.2 bits), Expect = 1.4e-31, Sum P(3) = 1.4e-31
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 1086 DTMPSAAGRRVEPKY 1100
+ +PS G R+EP++
Sbjct: 497 EVLPSKDGHRIEPRF 511
Score = 38 (18.4 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 1493 AVNSEESKSEAANPIESK 1510
AV +E S AA +E+K
Sbjct: 384 AVEDDEGVSSAAKAVETK 401
>UNIPROTKB|Q9N4W3 [details] [associations]
symbol:Y46H3C.4 "Protein Y46H3C.4" species:6239
"Caenorhabditis elegans" [GO:0009295 "nucleoid" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] InterPro:IPR002205
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 SMART:SM00434 GO:GO:0005524 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0006261
GO:GO:0000819 GO:GO:0006312 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 eggNOG:COG0188 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10 KO:K03164
GeneTree:ENSGT00390000016222 EMBL:FO081587 RefSeq:NP_503483.2
UniGene:Cel.28200 ProteinModelPortal:Q9N4W3 SMR:Q9N4W3 PaxDb:Q9N4W3
EnsemblMetazoa:Y46H3C.4 GeneID:189967 KEGG:cel:CELE_Y46H3C.4
UCSC:Y46H3C.4 CTD:189967 WormBase:Y46H3C.4 InParanoid:Q9N4W3
OMA:KDSASAQ NextBio:944220 Uniprot:Q9N4W3
Length = 616
Score = 283 (104.7 bits), Expect = 1.4e-31, Sum P(3) = 1.4e-31
Identities = 51/81 (62%), Positives = 60/81 (74%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
RIEPEWY PI PMVLVNGA+GI TGW T IPN+NPRE+V NIKR+I GE + PWYKN
Sbjct: 182 RIEPEWYCPISPMVLVNGAQGIDTGWRTNIPNYNPRELVKNIKRLIAGEPQKALAPWYKN 241
Query: 719 FKGEIDYCGDSRFVVNGEIAI 739
F+G+I RF GE+A+
Sbjct: 242 FRGKIIQIDPRRFACYGEVAL 262
Score = 161 (61.7 bits), Expect = 1.4e-31, Sum P(3) = 1.4e-31
Identities = 46/140 (32%), Positives = 71/140 (50%)
Query: 810 DNELAKPQKTGPQLERQERQAAEGEDDEA-GSQTQEEEDPDKDYDYLLGMTFWSLTMERK 868
+ + K +++G +++ + EDDE S + E Y+YL GMT ++ E
Sbjct: 363 EEQKLKLRESG-EMDEDDLATVAVEDDEGVSSAAKAVETKLSGYEYLFGMTILDVSEEET 421
Query: 869 NELLKKRDDKMTELNILKKKAPTDLWSDDLDA-LREKDKIHPCPGGNRTRGL--ALKRQT 925
N+L+ + ++KMTEL +LKKK DLW +DLD L E DK G++ L A+K+
Sbjct: 422 NKLINESEEKMTELRVLKKKTWQDLWHEDLDNFLSELDKQEARERGDQDAMLENAVKKLA 481
Query: 926 RYQPSNRVLTSRDEPMVVSS 945
S R T P V+ S
Sbjct: 482 ADAKSGRGSTKNVCPEVLPS 501
Score = 56 (24.8 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
Identities = 21/51 (41%), Positives = 26/51 (50%)
Query: 1149 EERKGHLRRWRRKEEESTQTVQVELREGVNISAPKPQASSTKNASNEDFLG 1199
EE+K LR +E+ TV VE EGV+ SA K A TK + E G
Sbjct: 363 EEQKLKLRESGEMDEDDLATVAVEDDEGVS-SAAK--AVETKLSGYEYLFG 410
Score = 44 (20.5 bits), Expect = 7.1e-20, Sum P(2) = 7.1e-20
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 2036 KELTFEHQRKSVSAEVNYGIRFQNNQEM---ETFLKQL--AGEVEKRLEEVKMK 2084
K LT +Q + + A++N I F+N +++ + +K A V+K EE K+K
Sbjct: 317 KRLT--NQARFILAKINKEIVFENKKKVAIVDDLIKMGFDADPVKKWKEEQKLK 368
Score = 43 (20.2 bits), Expect = 1.4e-31, Sum P(3) = 1.4e-31
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 1086 DTMPSAAGRRVEPKY 1100
+ +PS G R+EP++
Sbjct: 497 EVLPSKDGHRIEPRF 511
Score = 38 (18.4 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 1493 AVNSEESKSEAANPIESK 1510
AV +E S AA +E+K
Sbjct: 384 AVEDDEGVSSAAKAVETK 401
>UNIPROTKB|Q83EN5 [details] [associations]
symbol:dinP "DNA polymerase IV" species:227377 "Coxiella
burnetii RSA 493" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005737 GO:GO:0000287 GO:GO:0003684 GO:GO:0006281
GO:GO:0006261 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003887
HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 OMA:MNILNEY
RefSeq:NP_819324.2 GeneID:1208161 KEGG:cbu:CBU_0280 PATRIC:17929253
ProtClustDB:CLSK913950 BioCyc:CBUR227377:GJ7S-285-MONOMER
Uniprot:Q83EN5
Length = 372
Score = 252 (93.8 bits), Expect = 2.4e-31, Sum P(4) = 2.4e-31
Identities = 66/192 (34%), Positives = 98/192 (51%)
Query: 1898 IVSAVSCDEMYVDCSQL-LQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLAT 1956
+V +S DE Y+D S + + S T + A +RE I K T S G SNKL A++A+
Sbjct: 119 LVEPLSLDEAYLDVSDCKIHQGSAT--RIAQEIREQIVKRHSLTASAGVASNKLLAKVAS 176
Query: 1957 KKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQN 2016
KPNG + P DF+ +P+ + GVG K+ ++ TC DLQ +S + L
Sbjct: 177 AWNKPNGIKVILPSKADDFVKTLPIEKIHGVGKITAQKMKAMNIHTCSDLQALSREALSK 236
Query: 2017 EVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEK 2076
G+ G+TLY+ CRG D + + RKSVS E + E E L L ++++
Sbjct: 237 SFGSF-GVTLYELCRGIDPRSVEPNRIRKSVSVEHTFSQDIATLSECEIELANLFNDLKQ 295
Query: 2077 RLEEVKMKGKCI 2088
RL +K +CI
Sbjct: 296 RL--LKHTDRCI 305
Score = 105 (42.0 bits), Expect = 2.4e-31, Sum P(4) = 2.4e-31
Identities = 18/36 (50%), Positives = 30/36 (83%)
Query: 1616 IMHIDMDCFFVSVGIRHHPELQDEPVAV---AHGKG 1648
I+H+DMDCF+V++ +R +P+L+++PVAV AH +G
Sbjct: 27 IIHVDMDCFYVAIEMRDNPKLREKPVAVGGAAHSRG 62
Score = 85 (35.0 bits), Expect = 2.4e-31, Sum P(4) = 2.4e-31
Identities = 21/70 (30%), Positives = 38/70 (54%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESF 1738
R YG+ + + +A K CP+L I+P + E Y+ + + + L T +E +SL +E++
Sbjct: 72 RGYGVQSAISSSYAKKLCPSLIILPVNMEKYRAIGHQIRGLFQEYTHLVEPLSL--DEAY 129
Query: 1739 LNALPEDIRQ 1748
L+ I Q
Sbjct: 130 LDVSDCKIHQ 139
Score = 54 (24.1 bits), Expect = 2.4e-31, Sum P(4) = 2.4e-31
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 2158 ITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSK 2201
ITK+ ++ IS + K +L+ + + + PV L G+G+ S+
Sbjct: 319 ITKAETITQTISL--DLFKHLLYQIFERQQKPVRLLGVGVSFSE 360
>TIGR_CMR|CBU_0280 [details] [associations]
symbol:CBU_0280 "DNA-damage-inducible protein P"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 GO:GO:0003684
GO:GO:0006281 GO:GO:0006261 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0003887 HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 OMA:MNILNEY
RefSeq:NP_819324.2 GeneID:1208161 KEGG:cbu:CBU_0280 PATRIC:17929253
ProtClustDB:CLSK913950 BioCyc:CBUR227377:GJ7S-285-MONOMER
Uniprot:Q83EN5
Length = 372
Score = 252 (93.8 bits), Expect = 2.4e-31, Sum P(4) = 2.4e-31
Identities = 66/192 (34%), Positives = 98/192 (51%)
Query: 1898 IVSAVSCDEMYVDCSQL-LQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLAT 1956
+V +S DE Y+D S + + S T + A +RE I K T S G SNKL A++A+
Sbjct: 119 LVEPLSLDEAYLDVSDCKIHQGSAT--RIAQEIREQIVKRHSLTASAGVASNKLLAKVAS 176
Query: 1957 KKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQN 2016
KPNG + P DF+ +P+ + GVG K+ ++ TC DLQ +S + L
Sbjct: 177 AWNKPNGIKVILPSKADDFVKTLPIEKIHGVGKITAQKMKAMNIHTCSDLQALSREALSK 236
Query: 2017 EVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEK 2076
G+ G+TLY+ CRG D + + RKSVS E + E E L L ++++
Sbjct: 237 SFGSF-GVTLYELCRGIDPRSVEPNRIRKSVSVEHTFSQDIATLSECEIELANLFNDLKQ 295
Query: 2077 RLEEVKMKGKCI 2088
RL +K +CI
Sbjct: 296 RL--LKHTDRCI 305
Score = 105 (42.0 bits), Expect = 2.4e-31, Sum P(4) = 2.4e-31
Identities = 18/36 (50%), Positives = 30/36 (83%)
Query: 1616 IMHIDMDCFFVSVGIRHHPELQDEPVAV---AHGKG 1648
I+H+DMDCF+V++ +R +P+L+++PVAV AH +G
Sbjct: 27 IIHVDMDCFYVAIEMRDNPKLREKPVAVGGAAHSRG 62
Score = 85 (35.0 bits), Expect = 2.4e-31, Sum P(4) = 2.4e-31
Identities = 21/70 (30%), Positives = 38/70 (54%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESF 1738
R YG+ + + +A K CP+L I+P + E Y+ + + + L T +E +SL +E++
Sbjct: 72 RGYGVQSAISSSYAKKLCPSLIILPVNMEKYRAIGHQIRGLFQEYTHLVEPLSL--DEAY 129
Query: 1739 LNALPEDIRQ 1748
L+ I Q
Sbjct: 130 LDVSDCKIHQ 139
Score = 54 (24.1 bits), Expect = 2.4e-31, Sum P(4) = 2.4e-31
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 2158 ITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSK 2201
ITK+ ++ IS + K +L+ + + + PV L G+G+ S+
Sbjct: 319 ITKAETITQTISL--DLFKHLLYQIFERQQKPVRLLGVGVSFSE 360
>RGD|1586156 [details] [associations]
symbol:Top2b "topoisomerase (DNA) II beta" species:10116 "Rattus
norvegicus" [GO:0001764 "neuron migration" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISO]
[GO:0005080 "protein kinase C binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=ISO] [GO:0006265 "DNA topological
change" evidence=ISO] [GO:0007409 "axonogenesis" evidence=ISO]
[GO:0008022 "protein C-terminus binding" evidence=ISO] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0030900 "forebrain development"
evidence=ISO] [GO:0042826 "histone deacetylase binding"
evidence=ISO] [GO:0046982 "protein heterodimerization activity"
evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO] [GO:0005694
"chromosome" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0000792 "heterochromatin" evidence=ISO] InterPro:IPR002205
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 SMART:SM00434
RGD:1586156 GO:GO:0005524 GO:GO:0005080 GO:GO:0003682 GO:GO:0006261
GO:GO:0042826 Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819
GO:GO:0006312 GO:GO:0071778 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 HSSP:P06786 EMBL:D14046 IPI:IPI00763824 PIR:B48536
UniGene:Rn.104585 UniGene:Rn.226280 ProteinModelPortal:Q63177
ChEMBL:CHEMBL4672 Genevestigator:Q63177 Uniprot:Q63177
Length = 214
Score = 339 (124.4 bits), Expect = 4.3e-29, P = 4.3e-29
Identities = 60/97 (61%), Positives = 76/97 (78%)
Query: 659 RIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKN 718
R+EPEWYIPIIPMVL+NGAEGIGTGW K+PN++ REIVDN++RM+ G DP PM P YKN
Sbjct: 91 RVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVDNVRRMLEGLDPHPMLPNYKN 150
Query: 719 FKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKW 755
FKG I G +++ V+GEI ++D + +E TEL V W
Sbjct: 151 FKGTIQELGQNQYAVSGEIFVVDRNTVETTELPVRTW 187
>UNIPROTKB|Q47155 [details] [associations]
symbol:dinB species:83333 "Escherichia coli K-12"
[GO:0006974 "response to DNA damage stimulus" evidence=IEP]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0019985
"translesion synthesis" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0009432 "SOS response"
evidence=IEP;IDA] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005737 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0046872 GO:GO:0003684 GO:GO:0006260 EMBL:U70214 GO:GO:0000731
GO:GO:0009432 GO:GO:0003887 EMBL:D38582 GO:GO:0019985 PDB:1OK7
PDB:1UNN PDBsum:1OK7 PDBsum:1UNN KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 EMBL:AF483080
EMBL:AF483081 EMBL:AF483082 EMBL:AF483083 EMBL:AF483084
EMBL:AF483085 EMBL:AF483086 EMBL:AF483087 EMBL:AF483088
EMBL:AF483089 EMBL:AF483090 EMBL:AF483091 EMBL:AF483092
EMBL:AF483093 EMBL:AF483094 EMBL:AF483095 EMBL:AF483096
EMBL:AF483097 EMBL:AF483098 EMBL:AF483099 EMBL:AF483100
EMBL:AF483101 EMBL:AF483102 EMBL:AF483103 EMBL:AF483104
EMBL:AF483105 PIR:H64747 RefSeq:NP_414766.1 RefSeq:YP_488526.1
ProteinModelPortal:Q47155 SMR:Q47155 IntAct:Q47155
EnsemblBacteria:EBESCT00000002588 EnsemblBacteria:EBESCT00000014477
GeneID:12932684 GeneID:944922 KEGG:ecj:Y75_p0222 KEGG:eco:b0231
PATRIC:32115577 EchoBASE:EB2935 EcoGene:EG13141 OMA:MNILNEY
ProtClustDB:PRK02406 BioCyc:EcoCyc:G6115-MONOMER
BioCyc:ECOL316407:JW0221-MONOMER BioCyc:MetaCyc:G6115-MONOMER
EvolutionaryTrace:Q47155 Genevestigator:Q47155 Uniprot:Q47155
Length = 351
Score = 267 (99.0 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
Identities = 67/208 (32%), Positives = 106/208 (50%)
Query: 1875 EAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIA 1934
+AY+E + ++ S + +S DE Y+D + + L A +R+TI
Sbjct: 77 DAYKEASNHIREIFSRYTSR----IEPLSLDEAYLDVTDSVHCHGSATL-IAQEIRQTIF 131
Query: 1935 KETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFK 1994
E T S G K A++A+ KPNGQF +TP + F+ +PL+ +PGVG K
Sbjct: 132 NELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAK 191
Query: 1995 LNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYG 2054
L ++G +TCGD+Q L L G K G L++ +G D++++ E RKSV E
Sbjct: 192 LEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVERTMA 250
Query: 2055 IRFQNNQEMETFLKQLAGEVEKRLEEVK 2082
+ E E +++L E+E+RL +VK
Sbjct: 251 EDIHHWSECEAIIERLYPELERRLAKVK 278
Score = 106 (42.4 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 1667 RQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLN 1726
R+ ++ R++G+ + M G ALK CP+L ++P F+ YKE S + + + T
Sbjct: 37 RRGVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSR 96
Query: 1727 IEAVSLYTNESFLN 1740
IE +SL +E++L+
Sbjct: 97 IEPLSL--DEAYLD 108
Score = 98 (39.6 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 1616 IMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEF 1663
I+H+DMDCFF +V +R +P L+D P+A+ S+ R GV A +
Sbjct: 4 IIHVDMDCFFAAVEMRDNPALRDIPIAIG-----GSRERRGVISTANY 46
>TIGR_CMR|CPS_1040 [details] [associations]
symbol:CPS_1040 "DNA polymerase IV" species:167879
"Colwellia psychrerythraea 34H" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR003583
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00278
GO:GO:0005737 GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003887
eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 RefSeq:YP_267789.1
HSSP:Q9UNA4 ProteinModelPortal:Q487H6 STRING:Q487H6 GeneID:3521759
KEGG:cps:CPS_1040 PATRIC:21465357 OMA:QSLGMRT
BioCyc:CPSY167879:GI48-1126-MONOMER Uniprot:Q487H6
Length = 352
Score = 233 (87.1 bits), Expect = 8.8e-25, Sum P(3) = 8.8e-25
Identities = 57/186 (30%), Positives = 91/186 (48%)
Query: 1893 SSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQA 1952
S + ++ +S DE Y+D + L A +R I E T S G NK A
Sbjct: 93 SRYTDLIEPLSLDEAYLDVTDATMCQGSATL-IAERIRADIFNELNLTASAGIAPNKFLA 151
Query: 1953 RLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLK 2012
++A+ + KPNGQ +TP +++F+ + L +PG+G KLN G TC D++ +++
Sbjct: 152 KIASDENKPNGQCVITPDKVANFVEQLSLKKIPGIGPKTFEKLNRHGYVTCADVRQSNIR 211
Query: 2013 RLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAG 2072
LQN VG K +LY G D+++L QRKS++ E E + + L
Sbjct: 212 ALQNIVG-KFANSLYLKSHGVDNRDLEVSRQRKSLAIETTLAHDISTQDECKLVIDSLYQ 270
Query: 2073 EVEKRL 2078
++ RL
Sbjct: 271 KLLTRL 276
Score = 91 (37.1 bits), Expect = 8.8e-25, Sum P(3) = 8.8e-25
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 1616 IMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSS 1651
I+HIDMDCF+ ++ +R PE Q+ P+AV G G S
Sbjct: 7 IIHIDMDCFYAAIEMRDFPEYQNIPLAVG-GDGPRS 41
Score = 75 (31.5 bits), Expect = 8.8e-25, Sum P(3) = 8.8e-25
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESF 1738
R++G+ + M A + CP+LKIV + YKE S + + + T IE +SL +E++
Sbjct: 51 RQFGVRSAMPAIKAKQLCPHLKIVHGRMDVYKETSKNIREIFSRYTDLIEPLSL--DEAY 108
Query: 1739 LN 1740
L+
Sbjct: 109 LD 110
>UNIPROTKB|Q71Y46 [details] [associations]
symbol:dinB "DNA polymerase IV" species:265669 "Listeria
monocytogenes serotype 4b str. F2365" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 EMBL:AE017262 GenomeReviews:AE017262_GR
GO:GO:0003887 eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 OMA:MNILNEY ProtClustDB:PRK02406
RefSeq:YP_014591.1 ProteinModelPortal:Q71Y46 STRING:Q71Y46
GeneID:2798339 KEGG:lmf:LMOf2365_1998 PATRIC:20325291
Uniprot:Q71Y46
Length = 356
Score = 251 (93.4 bits), Expect = 2.9e-24, Sum P(3) = 2.9e-24
Identities = 65/200 (32%), Positives = 106/200 (53%)
Query: 1893 SSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQA 1952
S + I+ +S DE Y+D ++ + + + A +++TI +E G T S G NK A
Sbjct: 94 SRYTDIIEPLSLDEAYLDVTENKKGMKSATM-VAREIQQTIYQELGLTASAGVSFNKFIA 152
Query: 1953 RLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLK 2012
++A+ KP G +TP+ F+ IP++ GVG KL+ LG +T DL+ S
Sbjct: 153 KIASDFKKPAGITVVTPEEAEAFLEQIPVTKFYGVGKVTAEKLHRLGIETGADLKKWSEW 212
Query: 2013 RLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAG 2072
L E+ +K+G LY+H RG + + RKSV E + +++ +E L Q A
Sbjct: 213 DLIREL-HKHGYHLYRHVRGRSNNIVNPHRDRKSVGKETTFEFNVLDSRVLEQSLMQFAK 271
Query: 2073 EVEKRLEEVKMKGKCITLKL 2092
+VE+RL +++ GK + LKL
Sbjct: 272 KVEERLIKLQKHGKTVVLKL 291
Score = 83 (34.3 bits), Expect = 2.9e-24, Sum P(3) = 2.9e-24
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 1616 IMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMG 1675
I+HIDMD F+ SV R HPE + +P+ + G+ +K GV ++ + + M
Sbjct: 7 IIHIDMDAFYASVEQRDHPEFRGKPLIIG---GDPNK--RGVVATCSYEARKFGVHSAMP 61
Query: 1676 LNTREYGLGNGMFV 1689
NG+F+
Sbjct: 62 TRQAAKLCPNGIFI 75
Score = 64 (27.6 bits), Expect = 2.7e-22, Sum P(3) = 2.7e-22
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESF 1738
R++G+ + M A K CPN + + Y EVS + + + T IE +SL +E++
Sbjct: 52 RKFGVHSAMPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSL--DEAY 109
Query: 1739 LN 1740
L+
Sbjct: 110 LD 111
Score = 49 (22.3 bits), Expect = 2.9e-24, Sum P(3) = 2.9e-24
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 2158 ITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSKLE 2203
ITK +L Y + SQI + ++ + +R IG+ V+ L+
Sbjct: 299 ITKRLTLNEYTNDTSQIYQAAALLLRESYTGQDSIRLIGLTVTNLK 344
>UNIPROTKB|Q74CQ6 [details] [associations]
symbol:dinB "DNA polymerase IV" species:243231 "Geobacter
sulfurreducens PCA" [GO:0003674 "molecular_function" evidence=ND]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 GO:GO:0003684
GO:GO:0006281 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003887 KO:K02346 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082710
InterPro:IPR025188 Pfam:PF13438 HSSP:Q97W02 RefSeq:NP_952667.1
ProteinModelPortal:Q74CQ6 GeneID:2687433 KEGG:gsu:GSU1616
PATRIC:22026081 OMA:FETHTRA ProtClustDB:CLSK827609
BioCyc:GSUL243231:GH27-1576-MONOMER Uniprot:Q74CQ6
Length = 409
Score = 222 (83.2 bits), Expect = 3.8e-24, Sum P(4) = 3.8e-24
Identities = 62/198 (31%), Positives = 92/198 (46%)
Query: 1898 IVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATK 1957
+V S DE ++D + L+ + A ++ I G TCS G NKL A+LA+
Sbjct: 98 LVEVFSIDEAFLDLTGSLRLFGRADV-IAREIKARIRDRFGLTCSIGIAPNKLLAKLASD 156
Query: 1958 KAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNE 2017
KP+G + P+ ++ M P+ L G+G S +L LG TC DL + S K L
Sbjct: 157 MQKPDGLTIIPPENVASLMKTTPIRSLCGIGPSTEQRLKYLGISTCNDLGHFSSKILTRH 216
Query: 2018 VGNKNGLTLYKHCRGEDDKEL---TFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEV 2074
G G L + +G DD + T E + KSVS N ++ +L L+ V
Sbjct: 217 FGAM-GARLKQMGQGIDDSPVIPTTTEEEVKSVSHSTTLDHDLTNKDDIHKYLLMLSEMV 275
Query: 2075 EKRLEEVKMKGKCITLKL 2092
+R K KGK +TL +
Sbjct: 276 GRRARRYKTKGKTVTLTI 293
Score = 79 (32.9 bits), Expect = 3.8e-24, Sum P(4) = 3.8e-24
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESF 1738
R +G+G GM A + CP L +V + Y +S ++ ++ T +E S+ +E+F
Sbjct: 51 RAHGVGTGMTTHEAKRLCPELILVIGNNREYTRISKLIFEMLGQFTPLVEVFSI--DEAF 108
Query: 1739 LN 1740
L+
Sbjct: 109 LD 110
Score = 78 (32.5 bits), Expect = 3.8e-24, Sum P(4) = 3.8e-24
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 1616 IMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKG 1648
I+H+DM+ FF SV + P LQ +PVAV G G
Sbjct: 7 ILHLDMNAFFASVEQQADPSLQGKPVAVI-GSG 38
Score = 68 (29.0 bits), Expect = 3.8e-24, Sum P(4) = 3.8e-24
Identities = 25/91 (27%), Positives = 48/91 (52%)
Query: 2156 DYIT--KSSSLPMYISQASQILKEVLFIVNKLKV-DPVELRGIGIQVSKLEHQSKTLATI 2212
D+ T + +LP ++++ I + V +++ L++ P+ L +G+ +S L H S+ L
Sbjct: 297 DFTTFSRQETLPSPLNRSGDIYRAVTALLDTLQLTQPIRL--LGVAISNLVHASEQLPLF 354
Query: 2213 --DTFFTNKGKPPDQLNNPRPGPSNSTITPG 2241
+ T + DQ+N+ R G +TIT G
Sbjct: 355 PEERRLTTLSQAMDQVND-RFG--ETTITFG 382
>TIGR_CMR|GSU_1616 [details] [associations]
symbol:GSU_1616 "ImpB/MucB/SamB family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0009650 "UV protection"
evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 GO:GO:0003684
GO:GO:0006281 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003887 KO:K02346 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082710
InterPro:IPR025188 Pfam:PF13438 HSSP:Q97W02 RefSeq:NP_952667.1
ProteinModelPortal:Q74CQ6 GeneID:2687433 KEGG:gsu:GSU1616
PATRIC:22026081 OMA:FETHTRA ProtClustDB:CLSK827609
BioCyc:GSUL243231:GH27-1576-MONOMER Uniprot:Q74CQ6
Length = 409
Score = 222 (83.2 bits), Expect = 3.8e-24, Sum P(4) = 3.8e-24
Identities = 62/198 (31%), Positives = 92/198 (46%)
Query: 1898 IVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATK 1957
+V S DE ++D + L+ + A ++ I G TCS G NKL A+LA+
Sbjct: 98 LVEVFSIDEAFLDLTGSLRLFGRADV-IAREIKARIRDRFGLTCSIGIAPNKLLAKLASD 156
Query: 1958 KAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNE 2017
KP+G + P+ ++ M P+ L G+G S +L LG TC DL + S K L
Sbjct: 157 MQKPDGLTIIPPENVASLMKTTPIRSLCGIGPSTEQRLKYLGISTCNDLGHFSSKILTRH 216
Query: 2018 VGNKNGLTLYKHCRGEDDKEL---TFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEV 2074
G G L + +G DD + T E + KSVS N ++ +L L+ V
Sbjct: 217 FGAM-GARLKQMGQGIDDSPVIPTTTEEEVKSVSHSTTLDHDLTNKDDIHKYLLMLSEMV 275
Query: 2075 EKRLEEVKMKGKCITLKL 2092
+R K KGK +TL +
Sbjct: 276 GRRARRYKTKGKTVTLTI 293
Score = 79 (32.9 bits), Expect = 3.8e-24, Sum P(4) = 3.8e-24
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESF 1738
R +G+G GM A + CP L +V + Y +S ++ ++ T +E S+ +E+F
Sbjct: 51 RAHGVGTGMTTHEAKRLCPELILVIGNNREYTRISKLIFEMLGQFTPLVEVFSI--DEAF 108
Query: 1739 LN 1740
L+
Sbjct: 109 LD 110
Score = 78 (32.5 bits), Expect = 3.8e-24, Sum P(4) = 3.8e-24
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 1616 IMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKG 1648
I+H+DM+ FF SV + P LQ +PVAV G G
Sbjct: 7 ILHLDMNAFFASVEQQADPSLQGKPVAVI-GSG 38
Score = 68 (29.0 bits), Expect = 3.8e-24, Sum P(4) = 3.8e-24
Identities = 25/91 (27%), Positives = 48/91 (52%)
Query: 2156 DYIT--KSSSLPMYISQASQILKEVLFIVNKLKV-DPVELRGIGIQVSKLEHQSKTLATI 2212
D+ T + +LP ++++ I + V +++ L++ P+ L +G+ +S L H S+ L
Sbjct: 297 DFTTFSRQETLPSPLNRSGDIYRAVTALLDTLQLTQPIRL--LGVAISNLVHASEQLPLF 354
Query: 2213 --DTFFTNKGKPPDQLNNPRPGPSNSTITPG 2241
+ T + DQ+N+ R G +TIT G
Sbjct: 355 PEERRLTTLSQAMDQVND-RFG--ETTITFG 382
>UNIPROTKB|O67137 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:224324 "Aquifex
aeolicus VF5" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 EMBL:AE000657
GenomeReviews:AE000657_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 PROSITE:PS50880 PIR:F70388
RefSeq:NP_213700.1 ProteinModelPortal:O67137 SMR:O67137
PRIDE:O67137 GeneID:1193771 KEGG:aae:aq_1026 PATRIC:20959360
OMA:IFETTEF ProtClustDB:PRK14939 BioCyc:AAEO224324:GJBH-733-MONOMER
Uniprot:O67137
Length = 792
Score = 208 (78.3 bits), Expect = 5.5e-24, Sum P(5) = 5.5e-24
Identities = 57/181 (31%), Positives = 91/181 (50%)
Query: 438 QTKENMTLQKGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRD 496
+ KE + +K +P KL D ++ C + L EGDSA G RD
Sbjct: 392 KAKE-LVRRKSPLEEGVLPGKLADCSETDPSK---CEIFLVEGDSA-----GGSAKQARD 442
Query: 497 K-Y-GVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLM 554
+ Y + PLRGK++NV +A ++L N EI +V LG + D+K LRY +++
Sbjct: 443 RRYQAILPLRGKIINVEKARIDKVLSNDEIKAIVSALGCGIGEDL----DLKKLRYHKII 498
Query: 555 IMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEE 614
+MTD D DGSHI+ L++ F + P L+ ++ P+ + K ++E+ EFE
Sbjct: 499 LMTDADVDGSHIRTLLLTFFYRFMPKLVEEGYVYIAEPPLYRVKKGKKEIYIKDDKEFEH 558
Query: 615 W 615
+
Sbjct: 559 F 559
Score = 120 (47.3 bits), Expect = 5.5e-24, Sum P(5) = 5.5e-24
Identities = 53/200 (26%), Positives = 86/200 (43%)
Query: 168 MIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK--KSFKQVWKDN 225
M+F L + + +GG +G GA + N S +VE Y+ K ++ +K
Sbjct: 99 MVFTMLGAGGKFEKKVYTYSGGLHGVGASVVNALSEWLIVEV----YRDGKIYRMAFK-- 152
Query: 226 MSKVTSP-EIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVF 284
+V P + +K TK++F PD F+ T + D+V+ +R + A +VK
Sbjct: 153 RGEVVEPLHVVGETKKRGTKVSFKPDPEIFETTEIKFDIVE---KRVRELAYLNPEVKFE 209
Query: 285 LNGEKLP---VKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQV--- 338
L E+L + F ++ +E +P+ + E I D FQ V
Sbjct: 210 LTDERLGKHLIYKFDRGIEELVKYLNEGKEPLFKDIIRIQGEKEGVIV--DIAFQYVKDY 267
Query: 339 -----SFVNSIATTKGGRHV 353
SFVN+I T +GG HV
Sbjct: 268 KERIESFVNNIKTVEGGTHV 287
Score = 80 (33.2 bits), Expect = 5.5e-24, Sum P(5) = 5.5e-24
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GL+ + EIL NA D N I +T++++ N+++V ++G+GIPV H +
Sbjct: 41 GLHHLIWEILDNAVDEAVAGYARN-ISVTIHRD-NSVTVEDDGRGIPVDIHPETGKPAVE 98
Query: 143 MIF 145
M+F
Sbjct: 99 MVF 101
Score = 56 (24.8 bits), Expect = 5.5e-24, Sum P(5) = 5.5e-24
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 22 KKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSV 56
+ +TP + + E I + S LEH+ LRP YIG +
Sbjct: 5 QSQTP-QEYTAEAI-KAVSGLEHVRLRPAMYIGDI 37
Score = 51 (23.0 bits), Expect = 5.5e-24, Sum P(5) = 5.5e-24
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 397 MAKTLIDI--GVRLGGMALKPF---QVKNHIWIFINCLIVNPTFDSQTKENM 443
++K +I + G++L K F V+ + + C + NP F+ QTK +
Sbjct: 294 LSKAVIRMAQGLKLAKELKKSFTGEDVREGLTAVVACKVPNPQFEGQTKTKL 345
Score = 39 (18.8 bits), Expect = 8.1e-07, Sum P(5) = 8.1e-07
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 686 TKIPNHNPREIVDNI 700
TK+ N N ++IV++I
Sbjct: 343 TKLGNQNVKQIVESI 357
Score = 38 (18.4 bits), Expect = 4.4e-12, Sum P(4) = 4.4e-12
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 57 EPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
+P E ++ M E++ TY GL+ + + VNA
Sbjct: 94 KPAVEMVFTMLGAGGKFEKKVYTYSGGLHGVGASV-VNA 131
>UNIPROTKB|Q9KPS5 [details] [associations]
symbol:dinB "DNA polymerase IV" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005737
GO:GO:0046872 GO:GO:0003684 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0003887
eggNOG:COG0389 KO:K02346 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 OMA:QSLGMRT ProtClustDB:PRK02406
PIR:G82093 RefSeq:NP_231918.1 ProteinModelPortal:Q9KPS5
DNASU:2613209 GeneID:2613209 KEGG:vch:VC2287 PATRIC:20083613
Uniprot:Q9KPS5
Length = 360
Score = 219 (82.2 bits), Expect = 6.3e-23, Sum P(3) = 6.3e-23
Identities = 57/204 (27%), Positives = 100/204 (49%)
Query: 1896 SKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLA 1955
+ ++ +S DE Y+D S+ L A +R I +E T S G K A++A
Sbjct: 98 TSLIEPLSLDEAYLDVSESTAYQGSATL-IAQAIRRDIWQELNLTASAGVAPIKFLAKVA 156
Query: 1956 TKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQ 2015
+ KP+G + +TP + + + ++PL +PGVG L KL+ G D++ ++L
Sbjct: 157 SDLNKPDGLYVVTPDKVQEMVDSLPLEKIPGVGKVALEKLHQAGLYVGADVRRADYRKLL 216
Query: 2016 NEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQ-LAGEV 2074
++ G + G +L+K G D++E+ E +RKSV E + QE ++Q L E+
Sbjct: 217 HQFG-RLGASLWKKSHGIDEREVVTERERKSVGVEYTFSQNISTFQECWQVIEQKLYPEL 275
Query: 2075 EKRLEEVKMKGKCITLKLMVRSAE 2098
+ RL + I + V+ A+
Sbjct: 276 DARLSRAHPQRGIIKQGIKVKFAD 299
Score = 91 (37.1 bits), Expect = 6.3e-23, Sum P(3) = 6.3e-23
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 1667 RQR-TMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTL 1725
+QR ++ R++G+ + M ALK CP L +VP YK VS + + T
Sbjct: 40 KQRGVISTCNYQARKFGVRSAMPTAQALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTS 99
Query: 1726 NIEAVSLYTNESFLN 1740
IE +SL +E++L+
Sbjct: 100 LIEPLSL--DEAYLD 112
Score = 78 (32.5 bits), Expect = 6.3e-23, Sum P(3) = 6.3e-23
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 1616 IMHIDMDCFFVSVGIRHHPELQDEPVAVA-HGK 1647
I+H+DMDCFF +V +R +P ++ +AV H K
Sbjct: 8 IIHVDMDCFFAAVEMRDNPAYREIALAVGGHEK 40
>TIGR_CMR|VC_2287 [details] [associations]
symbol:VC_2287 "DNA-damage-inducible protein P" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 GO:GO:0003684
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
GO:GO:0003887 eggNOG:COG0389 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 OMA:QSLGMRT
ProtClustDB:PRK02406 PIR:G82093 RefSeq:NP_231918.1
ProteinModelPortal:Q9KPS5 DNASU:2613209 GeneID:2613209
KEGG:vch:VC2287 PATRIC:20083613 Uniprot:Q9KPS5
Length = 360
Score = 219 (82.2 bits), Expect = 6.3e-23, Sum P(3) = 6.3e-23
Identities = 57/204 (27%), Positives = 100/204 (49%)
Query: 1896 SKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLA 1955
+ ++ +S DE Y+D S+ L A +R I +E T S G K A++A
Sbjct: 98 TSLIEPLSLDEAYLDVSESTAYQGSATL-IAQAIRRDIWQELNLTASAGVAPIKFLAKVA 156
Query: 1956 TKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQ 2015
+ KP+G + +TP + + + ++PL +PGVG L KL+ G D++ ++L
Sbjct: 157 SDLNKPDGLYVVTPDKVQEMVDSLPLEKIPGVGKVALEKLHQAGLYVGADVRRADYRKLL 216
Query: 2016 NEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQ-LAGEV 2074
++ G + G +L+K G D++E+ E +RKSV E + QE ++Q L E+
Sbjct: 217 HQFG-RLGASLWKKSHGIDEREVVTERERKSVGVEYTFSQNISTFQECWQVIEQKLYPEL 275
Query: 2075 EKRLEEVKMKGKCITLKLMVRSAE 2098
+ RL + I + V+ A+
Sbjct: 276 DARLSRAHPQRGIIKQGIKVKFAD 299
Score = 91 (37.1 bits), Expect = 6.3e-23, Sum P(3) = 6.3e-23
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 1667 RQR-TMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTL 1725
+QR ++ R++G+ + M ALK CP L +VP YK VS + + T
Sbjct: 40 KQRGVISTCNYQARKFGVRSAMPTAQALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTS 99
Query: 1726 NIEAVSLYTNESFLN 1740
IE +SL +E++L+
Sbjct: 100 LIEPLSL--DEAYLD 112
Score = 78 (32.5 bits), Expect = 6.3e-23, Sum P(3) = 6.3e-23
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 1616 IMHIDMDCFFVSVGIRHHPELQDEPVAVA-HGK 1647
I+H+DMDCFF +V +R +P ++ +AV H K
Sbjct: 8 IIHVDMDCFFAAVEMRDNPAYREIALAVGGHEK 40
>UNIPROTKB|Q8EHU9 [details] [associations]
symbol:dinB "DNA polymerase IV" species:211586 "Shewanella
oneidensis MR-1" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005737 GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003887
eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 OMA:MNILNEY
ProtClustDB:PRK02406 RefSeq:NP_716739.1 HSSP:Q9UHC5
ProteinModelPortal:Q8EHU9 GeneID:1168948 KEGG:son:SO_1114
PATRIC:23521872 Uniprot:Q8EHU9
Length = 357
Score = 247 (92.0 bits), Expect = 6.6e-23, Sum P(2) = 6.6e-23
Identities = 64/196 (32%), Positives = 98/196 (50%)
Query: 1884 VQSAMKHKPSSESKIVSAVSCDEMYVDCSQL-LQELSLTPLQFASYLRETIAKETGCTCS 1942
V S ++ S ++++ +S DE Y+D S L + S T + A +R I ETG T S
Sbjct: 82 VSSQIRAIFSRYTELIEPLSLDEAYLDVSDCKLHKGSATLI--AEAIRRDILAETGLTAS 139
Query: 1943 TGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQT 2002
G K A++A+ KPNGQ+ + P + +F+ + L +PGVG KL+SLG T
Sbjct: 140 AGVAPVKFLAKVASDLNKPNGQYVIPPDKVPEFIRTLSLRQIPGVGKVTAEKLSSLGLNT 199
Query: 2003 CGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQE 2062
CGD+Q + L G K G L + +G DD+ L+ +RKSV E ++
Sbjct: 200 CGDVQTYPKQELITRFG-KFGAVLIERAQGIDDRGLSVSRERKSVGVETTLAQDIYTLEQ 258
Query: 2063 METFLKQLAGEVEKRL 2078
+ + L E+ RL
Sbjct: 259 CQQVMPGLIQELSTRL 274
Score = 90 (36.7 bits), Expect = 6.6e-23, Sum P(2) = 6.6e-23
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 1616 IMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYR 1667
I+H+DMDC+F +V +R PE + +P+AV S+ R GV ++ R
Sbjct: 4 IIHVDMDCYFAAVEMRDFPEYRGKPLAVG-----GSRERRGVISTCNYEARR 50
>TIGR_CMR|SO_1114 [details] [associations]
symbol:SO_1114 "DNA-damage-inducible protein P"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003887 eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 OMA:MNILNEY ProtClustDB:PRK02406
RefSeq:NP_716739.1 HSSP:Q9UHC5 ProteinModelPortal:Q8EHU9
GeneID:1168948 KEGG:son:SO_1114 PATRIC:23521872 Uniprot:Q8EHU9
Length = 357
Score = 247 (92.0 bits), Expect = 6.6e-23, Sum P(2) = 6.6e-23
Identities = 64/196 (32%), Positives = 98/196 (50%)
Query: 1884 VQSAMKHKPSSESKIVSAVSCDEMYVDCSQL-LQELSLTPLQFASYLRETIAKETGCTCS 1942
V S ++ S ++++ +S DE Y+D S L + S T + A +R I ETG T S
Sbjct: 82 VSSQIRAIFSRYTELIEPLSLDEAYLDVSDCKLHKGSATLI--AEAIRRDILAETGLTAS 139
Query: 1943 TGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQT 2002
G K A++A+ KPNGQ+ + P + +F+ + L +PGVG KL+SLG T
Sbjct: 140 AGVAPVKFLAKVASDLNKPNGQYVIPPDKVPEFIRTLSLRQIPGVGKVTAEKLSSLGLNT 199
Query: 2003 CGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQE 2062
CGD+Q + L G K G L + +G DD+ L+ +RKSV E ++
Sbjct: 200 CGDVQTYPKQELITRFG-KFGAVLIERAQGIDDRGLSVSRERKSVGVETTLAQDIYTLEQ 258
Query: 2063 METFLKQLAGEVEKRL 2078
+ + L E+ RL
Sbjct: 259 CQQVMPGLIQELSTRL 274
Score = 90 (36.7 bits), Expect = 6.6e-23, Sum P(2) = 6.6e-23
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 1616 IMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYR 1667
I+H+DMDC+F +V +R PE + +P+AV S+ R GV ++ R
Sbjct: 4 IIHVDMDCYFAAVEMRDFPEYRGKPLAVG-----GSRERRGVISTCNYEARR 50
>UNIPROTKB|P77993 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:243274
"Thermotoga maritima MSB8" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 EMBL:AE000512 GenomeReviews:AE000512_GR
GO:GO:0009295 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
PROSITE:PS50880 OMA:IFETTEF ProtClustDB:PRK05644 EMBL:U49692
PIR:JC4960 RefSeq:NP_228642.1 ProteinModelPortal:P77993 SMR:P77993
DNASU:898504 GeneID:898504 KEGG:tma:TM0833 PATRIC:23936592
Uniprot:P77993
Length = 636
Score = 206 (77.6 bits), Expect = 2.6e-22, Sum P(5) = 2.6e-22
Identities = 54/177 (30%), Positives = 91/177 (51%)
Query: 443 MTLQKGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVF 501
M +K +T +P KL D + + + L + EGDSA A R+ V
Sbjct: 394 MVRRKNVLQNTTLPGKLADCSSTHREKT---ELFIVEGDSAGGSAKQARD---REFQAVL 447
Query: 502 PLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQ 561
P+RGK+LNV +++ ++L+N +I++++ +G + D LRYGR++IMTD D
Sbjct: 448 PIRGKILNVEKSSLDRLLKNEQISDIIVAVGTGIGDDF----DESKLRYGRIIIMTDADI 503
Query: 562 DGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEE 618
DG+HI+ L++ + L+ + + P+ + REE YS E E+KE+
Sbjct: 504 DGAHIRTLLLTLFYRYMRPLIEQGRVYIALPPLYRIKAGREEFYVYSDQELAEYKEK 560
Score = 111 (44.1 bits), Expect = 2.6e-22, Sum P(5) = 2.6e-22
Identities = 53/202 (26%), Positives = 85/202 (42%)
Query: 168 MIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMS 227
++F L ++ + K++GG +G G + N S +E K ++Q ++
Sbjct: 91 VVFTVLHAGGKFSKDSYKISGGLHGVGVSVVNALSEW--LEVRVHRDGKIYRQRYERG-K 147
Query: 228 KVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTK-DVKVFLN 286
VT E+ + T + F PD F T D D+++ R K + + +N
Sbjct: 148 PVTPVEVIGETDKHGTIVRFKPDPLIFSETEFDPDILEHRLREIAFLVPGLKIEFEDRIN 207
Query: 287 GEKLPVK---NFQDYVKLYTDRQDED-GDPVKIIY-ENVNPR-------WEVAIAPSDRG 334
GEK K +YVK Y +R + D + I E V + E+A +D
Sbjct: 208 GEKKTFKFDGGIVEYVK-YLNRGKKALHDVIHIKRTEKVKTKNGEDEVIVEIAFQYTDSY 266
Query: 335 FQQ-VSFVNSIATTKGGRHVDA 355
+ VSF N+I T GG HV A
Sbjct: 267 SEDIVSFANTIKTVDGGTHVTA 288
Score = 83 (34.3 bits), Expect = 2.6e-22, Sum P(5) = 2.6e-22
Identities = 20/81 (24%), Positives = 44/81 (54%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GL+ + E++ N+ D + I++T++++ ++ V +NG+GIPV H +E
Sbjct: 33 GLHHLVYEVVDNSVDEALAG-YCDWIRVTLHED-GSVEVEDNGRGIPVDIHPEEGRSALE 90
Query: 143 MIFGHLLTSSNYNDEEDKVTG 163
++F L ++ + K++G
Sbjct: 91 VVFTVLHAGGKFSKDSYKISG 111
Score = 63 (27.2 bits), Expect = 2.5e-07, Sum P(4) = 2.5e-07
Identities = 31/100 (31%), Positives = 44/100 (44%)
Query: 2010 SLKRLQNEVGNK-NGLTLYKHCRGEDDKE-LT--FEHQRKSVSAEVNYGIRFQNNQEMET 2065
+L RL NE G K N L +GED +E LT K+ E + N + E
Sbjct: 292 TLTRLMNEYGKKHNFLKKDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEA 351
Query: 2066 FLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASK 2105
K + E++K + K I K+M S + REA+K
Sbjct: 352 VTKAMREELKKIFDANPELVKTILSKIM--STKQAREAAK 389
Score = 48 (22.0 bits), Expect = 2.6e-22, Sum P(5) = 2.6e-22
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGS 55
K S E I K LE + +RP YIGS
Sbjct: 3 KYSAESIKVLKG-LEPVRMRPGMYIGS 28
Score = 43 (20.2 bits), Expect = 2.6e-22, Sum P(5) = 2.6e-22
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 418 VKNHIWIFINCLIVNPTFDSQTKENM 443
V+ + I+ + NP F+ QTK +
Sbjct: 318 VREGLTAVISVYVKNPEFEGQTKSKL 343
Score = 40 (19.1 bits), Expect = 4.2e-05, Sum P(4) = 4.2e-05
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 1867 KKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQE 1917
KK+ + E +E L+ V S P E + S + +E+ ++ ++E
Sbjct: 308 KKDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEAVTKAMRE 358
Score = 38 (18.4 bits), Expect = 6.5e-05, Sum P(4) = 6.5e-05
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 1555 HLSTMGSMFKQYVNELREKH-----DGVFRGIEAIRKWKTSL 1591
H++ S + +NE +KH D F+G E +R+ T++
Sbjct: 285 HVTAFKSTLTRLMNEYGKKHNFLKKDDSFQG-EDVREGLTAV 325
Score = 37 (18.1 bits), Expect = 2.6e-10, Sum P(3) = 2.6e-10
Identities = 5/11 (45%), Positives = 10/11 (90%)
Query: 5 ESDFDPDVQQN 15
E++FDPD+ ++
Sbjct: 176 ETEFDPDILEH 186
>UNIPROTKB|Q74H89 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:243231
"Geobacter sulfurreducens PCA" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 HOGENOM:HOG000075155
KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 HSSP:P06982 RefSeq:NP_951065.1
ProteinModelPortal:Q74H89 SMR:Q74H89 GeneID:2686080
KEGG:gsu:GSU0003 PATRIC:22022743 BioCyc:GSUL243231:GH27-3-MONOMER
Uniprot:Q74H89
Length = 795
Score = 209 (78.6 bits), Expect = 1.3e-21, Sum P(3) = 1.3e-21
Identities = 57/165 (34%), Positives = 85/165 (51%)
Query: 443 MTLQKGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YG 499
+T +KG+ + +P KL D + ++ C L L EGDSA G GRD+
Sbjct: 394 LTRRKGALDISNLPGKLADCQE---RDPALCELYLVEGDSA-----GGSAKQGRDRKFQA 445
Query: 500 VFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQ 559
+ PL+GK+LNV +A ++L + EI L+ LG K D+ LRY R+++MTD
Sbjct: 446 ILPLKGKILNVEKARFDKMLSSQEIGTLITALGTGIGKDDF---DIAKLRYHRIIVMTDA 502
Query: 560 DQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREEL 604
D DGSHI L++ F P ++ L P+ K + R+EL
Sbjct: 503 DVDGSHILTLLLTFFFRQMPEVVERGHLYIAQPPLYKVKRGRKEL 547
Score = 125 (49.1 bits), Expect = 1.3e-21, Sum P(3) = 1.3e-21
Identities = 51/192 (26%), Positives = 86/192 (44%)
Query: 173 LLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSP 232
L +++ KV+GG +G G + N S K +E K ++Q + + T
Sbjct: 101 LHAGGKFDNTSYKVSGGLHGVGVSVVNALSRK--LELEIRRDGKVYRQSYACGDPQ-TPL 157
Query: 233 EIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPV 292
E+ +K TKITF PD T F+ T D++++R + A V++ + E+
Sbjct: 158 EVMGETKKRGTKITFLPDDTIFETTEFS---FDVLSQRLRELAFLNAGVRITITDEREEG 214
Query: 293 KNFQ--------DYVKLYTDRQDEDGDPVKIIY--ENVNPRWEVAIAPSDRGFQQV-SFV 341
K+ +V+ Y +R P I + E EVA+ +D ++V SF
Sbjct: 215 KHHDFHYEGGIVSFVE-YLNRNRTALHPKPIYFKGEKAGVEMEVALQYNDSYDEKVFSFA 273
Query: 342 NSIATTKGGRHV 353
N+I T +GG H+
Sbjct: 274 NNINTHEGGTHL 285
Score = 67 (28.6 bits), Expect = 1.3e-21, Sum P(3) = 1.3e-21
Identities = 21/85 (24%), Positives = 40/85 (47%)
Query: 79 TYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKM 138
T GL+ + EI+ N+ D N + +T++ + +++V +NG+GIP H E
Sbjct: 34 TAAQGLHHLVYEIVDNSIDEALAG-YCNEVNVTIHLD-GSLTVVDNGRGIPTDIHPTEGK 91
Query: 139 FVPTMIFGHLLTSSNYNDEEDKVTG 163
+ L +++ KV+G
Sbjct: 92 PAAEVALTVLHAGGKFDNTSYKVSG 116
>TIGR_CMR|GSU_0003 [details] [associations]
symbol:GSU_0003 "DNA gyrase, B subunit" species:243231
"Geobacter sulfurreducens PCA" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006265 "DNA topological change"
evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898 InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 EMBL:AE017180
GenomeReviews:AE017180_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939 HSSP:P06982
RefSeq:NP_951065.1 ProteinModelPortal:Q74H89 SMR:Q74H89
GeneID:2686080 KEGG:gsu:GSU0003 PATRIC:22022743
BioCyc:GSUL243231:GH27-3-MONOMER Uniprot:Q74H89
Length = 795
Score = 209 (78.6 bits), Expect = 1.3e-21, Sum P(3) = 1.3e-21
Identities = 57/165 (34%), Positives = 85/165 (51%)
Query: 443 MTLQKGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YG 499
+T +KG+ + +P KL D + ++ C L L EGDSA G GRD+
Sbjct: 394 LTRRKGALDISNLPGKLADCQE---RDPALCELYLVEGDSA-----GGSAKQGRDRKFQA 445
Query: 500 VFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQ 559
+ PL+GK+LNV +A ++L + EI L+ LG K D+ LRY R+++MTD
Sbjct: 446 ILPLKGKILNVEKARFDKMLSSQEIGTLITALGTGIGKDDF---DIAKLRYHRIIVMTDA 502
Query: 560 DQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREEL 604
D DGSHI L++ F P ++ L P+ K + R+EL
Sbjct: 503 DVDGSHILTLLLTFFFRQMPEVVERGHLYIAQPPLYKVKRGRKEL 547
Score = 125 (49.1 bits), Expect = 1.3e-21, Sum P(3) = 1.3e-21
Identities = 51/192 (26%), Positives = 86/192 (44%)
Query: 173 LLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSP 232
L +++ KV+GG +G G + N S K +E K ++Q + + T
Sbjct: 101 LHAGGKFDNTSYKVSGGLHGVGVSVVNALSRK--LELEIRRDGKVYRQSYACGDPQ-TPL 157
Query: 233 EIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPV 292
E+ +K TKITF PD T F+ T D++++R + A V++ + E+
Sbjct: 158 EVMGETKKRGTKITFLPDDTIFETTEFS---FDVLSQRLRELAFLNAGVRITITDEREEG 214
Query: 293 KNFQ--------DYVKLYTDRQDEDGDPVKIIY--ENVNPRWEVAIAPSDRGFQQV-SFV 341
K+ +V+ Y +R P I + E EVA+ +D ++V SF
Sbjct: 215 KHHDFHYEGGIVSFVE-YLNRNRTALHPKPIYFKGEKAGVEMEVALQYNDSYDEKVFSFA 273
Query: 342 NSIATTKGGRHV 353
N+I T +GG H+
Sbjct: 274 NNINTHEGGTHL 285
Score = 67 (28.6 bits), Expect = 1.3e-21, Sum P(3) = 1.3e-21
Identities = 21/85 (24%), Positives = 40/85 (47%)
Query: 79 TYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKM 138
T GL+ + EI+ N+ D N + +T++ + +++V +NG+GIP H E
Sbjct: 34 TAAQGLHHLVYEIVDNSIDEALAG-YCNEVNVTIHLD-GSLTVVDNGRGIPTDIHPTEGK 91
Query: 139 FVPTMIFGHLLTSSNYNDEEDKVTG 163
+ L +++ KV+G
Sbjct: 92 PAAEVALTVLHAGGKFDNTSYKVSG 116
>TIGR_CMR|CHY_2705 [details] [associations]
symbol:CHY_2705 "DNA gyrase, B subunit" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK05644 HOGENOM:HOG000075156 RefSeq:YP_361487.1
ProteinModelPortal:Q3A8P7 SMR:Q3A8P7 STRING:Q3A8P7 GeneID:3726578
KEGG:chy:CHY_2705 PATRIC:21278431
BioCyc:CHYD246194:GJCN-2703-MONOMER Uniprot:Q3A8P7
Length = 635
Score = 217 (81.4 bits), Expect = 2.7e-20, Sum P(4) = 2.7e-20
Identities = 61/176 (34%), Positives = 90/176 (51%)
Query: 446 QKGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFP 502
+K + S +P KL D ++ K+ C L L EGDSA G GRD+ + P
Sbjct: 396 RKTALESNTLPGKLADCSE---KDPSLCELYLVEGDSA-----GGSAKQGRDRRFQAILP 447
Query: 503 LRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQD 562
LRGK+LNV ++ +IL N EI ++ LG K + D++ RY RL+IMTD D D
Sbjct: 448 LRGKILNVEKSRLDKILANEEIRAMITALGTGVDKDF----DIEKARYHRLIIMTDADVD 503
Query: 563 GSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEE 618
G+HI+ L++ F + L+ ++ P+ K K + E YS E E + E
Sbjct: 504 GAHIRTLLLTFFYRYLRPLIENGYVYIAQPPLYKVKKGKLEKYLYSDDELERYLNE 559
Score = 129 (50.5 bits), Expect = 2.7e-20, Sum P(4) = 2.7e-20
Identities = 60/233 (25%), Positives = 100/233 (42%)
Query: 128 IPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVT 187
I V+ HKD + V G + + + VV TM+ H + KV+
Sbjct: 63 IEVIIHKDGSITVADN--GRGIPVDIHPEVGKPAVEVVLTML--H--AGGKFGGGGYKVS 116
Query: 188 GGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITF 247
GG +G G + N S +E + Q + +T +I SK T ITF
Sbjct: 117 GGLHGVGVSVVNALSEW--LEVRIKRDGNLYYQKFSRG-EPITELKIIGKSKSTGTIITF 173
Query: 248 TPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDY---VKLYTD 304
PD F+ + D + +R + + K+VK+ L E++ + ++ +K Y
Sbjct: 174 KPDAEIFETVEFN---YDTLAKRLLELSYLNKNVKIILKDERINKEEIFEHSGGIKDYLK 230
Query: 305 RQDEDGDPV-KIIY---ENVNPRWEVAIAPSDRGFQQV-SFVNSIATTKGGRH 352
+++ +P+ KIIY E EVA+ + + + SF N+I TT+GG H
Sbjct: 231 YLNKNKEPLHKIIYFEKEKDEVVVEVALQYCNSFSENILSFTNNINTTEGGTH 283
Score = 63 (27.2 bits), Expect = 1.2e-13, Sum P(4) = 1.2e-13
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKD 135
GL+ + E++ N+ D N I++ ++++ +I+V +NG+GIPV H +
Sbjct: 39 GLHHLVYEVVDNSIDEALAG-FCNRIEVIIHKD-GSITVADNGRGIPVDIHPE 89
Score = 41 (19.5 bits), Expect = 2.7e-20, Sum P(4) = 2.7e-20
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 29 KMSVEKIYQKKSQLEHILLRPDTYIGS 55
K E+I K LE + RP YIGS
Sbjct: 9 KYGAEEIQVLKG-LEGVRKRPAMYIGS 34
Score = 41 (19.5 bits), Expect = 2.7e-20, Sum P(4) = 2.7e-20
Identities = 7/38 (18%), Positives = 20/38 (52%)
Query: 406 VRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENM 443
++ ++L+ ++ + I+ + +P F+ QTK +
Sbjct: 305 IKENNLSLQGEDIREGLTAIISVKVPDPQFEGQTKTKL 342
>UNIPROTKB|Q81M86 [details] [associations]
symbol:dinB "DNA polymerase IV" species:1392 "Bacillus
anthracis" [GO:0003674 "molecular_function" evidence=ND]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 GO:GO:0003887 eggNOG:COG0389 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 RefSeq:NP_846596.1 RefSeq:YP_021011.1
RefSeq:YP_030301.1 ProteinModelPortal:Q81M86
EnsemblBacteria:EBBACT00000012953 EnsemblBacteria:EBBACT00000016454
EnsemblBacteria:EBBACT00000021276 GeneID:1087598 GeneID:2818956
GeneID:2848139 KEGG:ban:BA_4366 KEGG:bar:GBAA_4366 KEGG:bat:BAS4051
HOGENOM:HOG000082710 OMA:GDQIRRI ProtClustDB:PRK01810
BioCyc:BANT260799:GJAJ-4108-MONOMER
BioCyc:BANT261594:GJ7F-4248-MONOMER InterPro:IPR025188 Pfam:PF13438
Uniprot:Q81M86
Length = 412
Score = 181 (68.8 bits), Expect = 1.6e-19, Sum P(4) = 1.6e-19
Identities = 50/184 (27%), Positives = 89/184 (48%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ VS DE Y+D + L +PL+ A +++ + E CS G N A+ A+
Sbjct: 106 IQPVSIDEGYLDITDCYA-LG-SPLEIAKMIQQALLTELQLPCSIGIAPNLFLAKTASDM 163
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
KP G L + I + + +P+ + G+G KLN + QT L + ++ ++
Sbjct: 164 KKPLGITVLRKRDIPEMIWPLPVGAMHGIGEKTAEKLNDIHIQTIEQLAKGNEHIIRAKI 223
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEH--QRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEK 2076
G K+G+ L + +G DD+E+ Q KSV + + +E+ L++L+ V K
Sbjct: 224 G-KHGVDLQRRAKGMDDREVDPSQMGQHKSVGNSMTFSKDMDEEKELLDMLQRLSKSVSK 282
Query: 2077 RLEE 2080
RL++
Sbjct: 283 RLQK 286
Score = 106 (42.4 bits), Expect = 1.6e-19, Sum P(4) = 1.6e-19
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 1615 VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGV 1657
VI+H+DM+CFF SV I H LQ +P+AVA GN K R+G+
Sbjct: 11 VILHVDMNCFFASVEIAHDSSLQGKPLAVA---GNE-KERKGI 49
Score = 84 (34.6 bits), Expect = 1.6e-19, Sum P(4) = 1.6e-19
Identities = 19/62 (30%), Positives = 36/62 (58%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESF 1738
REYG+ M + A + CP L + +F Y+E S+ ++ +++ T I+ VS+ +E +
Sbjct: 58 REYGIRTTMPLWEAKRLCPQLIVRRPNFTLYREASFQMFQILSRFTEKIQPVSI--DEGY 115
Query: 1739 LN 1740
L+
Sbjct: 116 LD 117
Score = 38 (18.4 bits), Expect = 1.6e-19, Sum P(4) = 1.6e-19
Identities = 12/58 (20%), Positives = 29/58 (50%)
Query: 2158 ITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSKLEHQSKTLATIDTF 2215
+T+S L I + I + + K D +R +G+ +++E +++++ +D F
Sbjct: 306 VTRSKQLKNAIWEERDIFQAASRLW-KQHWDGDSVRLLGVTATEIEWKTESVKQLDLF 362
>TIGR_CMR|BA_4366 [details] [associations]
symbol:BA_4366 "DNA-damage-inducible protein P, putative"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0009650 "UV protection"
evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 GO:GO:0003887 eggNOG:COG0389 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 RefSeq:NP_846596.1 RefSeq:YP_021011.1
RefSeq:YP_030301.1 ProteinModelPortal:Q81M86
EnsemblBacteria:EBBACT00000012953 EnsemblBacteria:EBBACT00000016454
EnsemblBacteria:EBBACT00000021276 GeneID:1087598 GeneID:2818956
GeneID:2848139 KEGG:ban:BA_4366 KEGG:bar:GBAA_4366 KEGG:bat:BAS4051
HOGENOM:HOG000082710 OMA:GDQIRRI ProtClustDB:PRK01810
BioCyc:BANT260799:GJAJ-4108-MONOMER
BioCyc:BANT261594:GJ7F-4248-MONOMER InterPro:IPR025188 Pfam:PF13438
Uniprot:Q81M86
Length = 412
Score = 181 (68.8 bits), Expect = 1.6e-19, Sum P(4) = 1.6e-19
Identities = 50/184 (27%), Positives = 89/184 (48%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
+ VS DE Y+D + L +PL+ A +++ + E CS G N A+ A+
Sbjct: 106 IQPVSIDEGYLDITDCYA-LG-SPLEIAKMIQQALLTELQLPCSIGIAPNLFLAKTASDM 163
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
KP G L + I + + +P+ + G+G KLN + QT L + ++ ++
Sbjct: 164 KKPLGITVLRKRDIPEMIWPLPVGAMHGIGEKTAEKLNDIHIQTIEQLAKGNEHIIRAKI 223
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEH--QRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEK 2076
G K+G+ L + +G DD+E+ Q KSV + + +E+ L++L+ V K
Sbjct: 224 G-KHGVDLQRRAKGMDDREVDPSQMGQHKSVGNSMTFSKDMDEEKELLDMLQRLSKSVSK 282
Query: 2077 RLEE 2080
RL++
Sbjct: 283 RLQK 286
Score = 106 (42.4 bits), Expect = 1.6e-19, Sum P(4) = 1.6e-19
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 1615 VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGV 1657
VI+H+DM+CFF SV I H LQ +P+AVA GN K R+G+
Sbjct: 11 VILHVDMNCFFASVEIAHDSSLQGKPLAVA---GNE-KERKGI 49
Score = 84 (34.6 bits), Expect = 1.6e-19, Sum P(4) = 1.6e-19
Identities = 19/62 (30%), Positives = 36/62 (58%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESF 1738
REYG+ M + A + CP L + +F Y+E S+ ++ +++ T I+ VS+ +E +
Sbjct: 58 REYGIRTTMPLWEAKRLCPQLIVRRPNFTLYREASFQMFQILSRFTEKIQPVSI--DEGY 115
Query: 1739 LN 1740
L+
Sbjct: 116 LD 117
Score = 38 (18.4 bits), Expect = 1.6e-19, Sum P(4) = 1.6e-19
Identities = 12/58 (20%), Positives = 29/58 (50%)
Query: 2158 ITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSKLEHQSKTLATIDTF 2215
+T+S L I + I + + K D +R +G+ +++E +++++ +D F
Sbjct: 306 VTRSKQLKNAIWEERDIFQAASRLW-KQHWDGDSVRLLGVTATEIEWKTESVKQLDLF 362
>TIGR_CMR|CJE_0003 [details] [associations]
symbol:CJE_0003 "DNA gyrase, B subunit" species:195099
"Campylobacter jejuni RM1221" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 GO:GO:0006261 EMBL:CP000025
GenomeReviews:CP000025_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939
RefSeq:YP_178032.1 ProteinModelPortal:Q5HXF3 STRING:Q5HXF3
GeneID:3230659 KEGG:cjr:CJE0003 PATRIC:20041695
BioCyc:CJEJ195099:GJC0-3-MONOMER Uniprot:Q5HXF3
Length = 769
Score = 184 (69.8 bits), Expect = 3.4e-19, Sum P(3) = 3.4e-19
Identities = 54/178 (30%), Positives = 87/178 (48%)
Query: 443 MTLQKGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVF 501
+T +K S +P KL D +K+ + + L EGDSA A G R +
Sbjct: 387 LTRKKESLSVGTLPGKLADCQ---SKDPSESEIYLVEGDSAGGSAKQGRE---RSFQAIL 440
Query: 502 PLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQ 561
PLRGK+LNV +A +IL++ +I N++ G + + D+ LRY +++IMTD D
Sbjct: 441 PLRGKILNVEKARLDKILKSEQIQNMITAFGCGIGEDF----DLSKLRYHKIIIMTDADV 496
Query: 562 DGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEET 619
DGSHI+ L++ F L+ + P+ KA++++ E+ ET
Sbjct: 497 DGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYLYKKAKKQIYLKDEKALSEYLIET 554
Score = 109 (43.4 bits), Expect = 3.4e-19, Sum P(3) = 3.4e-19
Identities = 48/196 (24%), Positives = 86/196 (43%)
Query: 167 TMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFV--VETSCSEYKKSFKQVWKD 224
T++ L ++ + KV+GG +G G + N S K V VE + Y++ F +
Sbjct: 91 TVVLTVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSE---- 146
Query: 225 NMSKVTSP-EIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKV 283
KV S + SK T I F PD F++T D +++ +R + A + +
Sbjct: 147 --GKVISEFGVIGKSKKTGTTIEFWPDDQIFEVTEFD---YEILAKRFRELAYLNPKITI 201
Query: 284 FLNGEKLPVK---NFQDYVKLYTDRQDEDGDPVKIIYENVNPR---WEVAIAPSDRGFQQ 337
++ +F+ + + ++ K I+ +V+ EVA+ +D +
Sbjct: 202 NFKDNRVGKHESFHFEGGISQFVIDLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSEN 261
Query: 338 V-SFVNSIATTKGGRH 352
+ SFVN+I T GG H
Sbjct: 262 LLSFVNNIKTPDGGTH 277
Score = 85 (35.0 bits), Expect = 3.4e-19, Sum P(3) = 3.4e-19
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 79 TYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKM 138
T + GL+ + E++ N+ D + I + + E + I V +NG+GIPV H E M
Sbjct: 30 TNIGGLHHMIYEVVDNSIDEAMAG-HCDTIDVEITTEGSCI-VSDNGRGIPVDMHPTENM 87
Query: 139 FVPTMIFGHLLTSSNYNDEEDKVTG 163
T++ L ++ + KV+G
Sbjct: 88 PTLTVVLTVLHAGGKFDKDTYKVSG 112
Score = 55 (24.4 bits), Expect = 7.7e-06, Sum P(3) = 7.7e-06
Identities = 32/132 (24%), Positives = 54/132 (40%)
Query: 1491 SEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQ-ASSTKNASNEDFLGEFYN 1549
S + + S E N I + +E + V++ P+PQ TK ++ +
Sbjct: 290 SNYIEANASAREKDNKITGEDV---REGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVS 346
Query: 1550 KSRLHHLSTMGSMFKQYVNELREKHDGVF---RGIEAIRKW------KTSLGI-TEDEDL 1599
K+ +L+ F++ E + + V RG EA +K K SL + T L
Sbjct: 347 KASFEYLT---KYFEENPIEAKAIMNKVLMAARGREAAKKARELTRKKESLSVGTLPGKL 403
Query: 1600 EETFSDNPSPSE 1611
+ S +PS SE
Sbjct: 404 ADCQSKDPSESE 415
Score = 37 (18.1 bits), Expect = 0.00046, Sum P(3) = 0.00046
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 2113 DYITKS-SSLPIYERPLIITYFLLLVRSAEAPREA 2146
+Y+TK PI E I+ L+ R EA ++A
Sbjct: 351 EYLTKYFEENPI-EAKAIMNKVLMAARGREAAKKA 384
>ASPGD|ASPL0000039840 [details] [associations]
symbol:AN3373 species:162425 "Emericella nidulans"
[GO:0000077 "DNA damage checkpoint" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 EMBL:BN001306 GO:GO:0003887 Gene3D:3.30.1490.100
SUPFAM:SSF100879 OMA:VHVDCDA EnsemblFungi:CADANIAT00009669
HOGENOM:HOG000082709 Uniprot:C8VHQ1
Length = 612
Score = 205 (77.2 bits), Expect = 4.7e-19, Sum P(3) = 4.7e-19
Identities = 59/205 (28%), Positives = 99/205 (48%)
Query: 1901 AVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAK 1960
+ S DE Y++ + +E L P + S +R I ++T + S G +N A++ + + K
Sbjct: 205 SASIDEAYLNITAYCREKQLDPDEAVSRMRAEILEKTKISVSAGIAANAKIAKICSNRNK 264
Query: 1961 PNGQFHLTPQ--IISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDL--QNISLKRLQN 2016
PNGQF + + I +FM ++P+ + GVG +L+S+G +TCGD+ Q L +L
Sbjct: 265 PNGQFRVPNEKNAIMEFMRDLPMRKINGVGRVFERELDSIGIKTCGDIFPQRAYLAKL-- 322
Query: 2017 EVGNKNGLTLYKHCR---GEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGE 2073
G K L C G + ++RKSV E + +E L A E
Sbjct: 323 -FGEK-ALHFLAQCYLGVGRTKIQPAESYERKSVGTERTFH-EISKREEFREKLWSCAQE 379
Query: 2074 VEKRLEEVKMKGKCITLKLMVRSAE 2098
+EK L + G+ + LK+ + + E
Sbjct: 380 LEKDLSRTQFMGRTLVLKVKLATFE 404
Score = 93 (37.8 bits), Expect = 4.7e-19, Sum P(3) = 4.7e-19
Identities = 31/102 (30%), Positives = 55/102 (53%)
Query: 1551 SRLHHLSTMGSMFKQYVNELREKHDGVFRGIEAIRKWKT---SLGITEDEDL-EETFSDN 1606
S + + ++ GS F + ++R+ + + I+ I K KT SL ++ D L ++ F++
Sbjct: 49 SEIIYNASKGSKFFNH-EQIRD--NVLTEKIQRILKEKTRLESLNLSVDLRLADQVFAEI 105
Query: 1607 PSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKG 1648
S + ++H+D D FF +V PEL+ P+AV GKG
Sbjct: 106 ESTRDLSQYVVHVDCDAFFAAVEELDRPELKTVPMAV--GKG 145
Score = 73 (30.8 bits), Expect = 4.7e-19, Sum P(3) = 4.7e-19
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESF 1738
R++G +GM A K CP L +P ++E Y + + ++A E+ S+ +E++
Sbjct: 155 RKFGCRSGMASFVAKKLCPQLICLPQNYEKYTAKAQEIRAILAQYDPQFESASI--DEAY 212
Query: 1739 LNALPEDIRQEVLD 1752
LN + R++ LD
Sbjct: 213 LN-ITAYCREKQLD 225
>ZFIN|ZDB-GENE-060526-137 [details] [associations]
symbol:polk "polymerase (DNA directed) kappa"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
SMART:SM00734 ZFIN:ZDB-GENE-060526-137 GO:GO:0003684 GO:GO:0006281
GO:GO:0003887 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
GeneTree:ENSGT00530000062942 HOVERGEN:HBG101212 OrthoDB:EOG4Z8XVV
EMBL:BX294131 IPI:IPI00806343 UniGene:Dr.86433 SMR:B0S5R3
Ensembl:ENSDART00000141039 OMA:FISTEDK Uniprot:B0S5R3
Length = 875
Score = 193 (73.0 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
Identities = 56/188 (29%), Positives = 94/188 (50%)
Query: 1929 LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTP--QIISDFMLNIPLSDLPG 1986
+R I ++T T S G N + A++ + K KPNGQ+ + P Q++ DFM ++P+ + G
Sbjct: 248 MRFRIEQKTSLTASAGIAPNMMLAKVCSDKNKPNGQYRIPPERQVVMDFMKDLPVRKVSG 307
Query: 1987 VGHSLLFKLNSLGAQTCGDL-QNISLKRLQNEVGNKNGLTLYKHCR-GEDDKELTFEHQR 2044
VG L +LG TC L Q ++L L + ++ + H G + + +R
Sbjct: 308 VGKVTEKMLAALGIVTCSQLGQQMALLSL---LFSETSWHHFLHISLGLGSTYMERDSER 364
Query: 2045 KSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREAS 2104
KS+S E +G + E + K+L ++ + L+ +KGK +TLKL E +A
Sbjct: 365 KSMSTERTFG-EMSDAGEQYSLCKELCHDLAQDLQREGLKGKTVTLKLKNVKFEVKTKAF 423
Query: 2105 KFLGHGVC 2112
L + VC
Sbjct: 424 T-LQYAVC 430
Score = 105 (42.0 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
Identities = 35/116 (30%), Positives = 65/116 (56%)
Query: 1538 ASNEDFLG-EFYNKSRLHHL---STMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGI 1593
A N++ G E ++ +++ + ++ GS F Y NEL+++ V + IE + + K I
Sbjct: 20 ALNDNKAGMEGLDRDKINKIILETSKGSRF--YENELKKERQ-VNQRIEKMMEQKAK--I 74
Query: 1594 TEDE------DLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
T+++ +++ D E VI+H+DMD F+ +V +R PEL+D+P+AV
Sbjct: 75 TKEQMKQAQAEVDRLTVDLERSRELGRVIVHVDMDAFYAAVEMRDCPELKDKPMAV 130
Score = 76 (31.8 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 1677 NTREYGLGNGMFVGHALKK-CPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTN 1735
+ R +G+ M G KK CP+L IVP +F+ Y+ VS + + + N +SL +
Sbjct: 142 HARRFGVRAAM-PGFIAKKLCPDLVIVPTNFDKYRAVSAQVREIFSEYDPNFMPMSL--D 198
Query: 1736 ESFLNALPEDIRQ 1748
E++L+ + E + Q
Sbjct: 199 EAYLD-ITEHLEQ 210
Score = 52 (23.4 bits), Expect = 3.6e-13, Sum P(3) = 3.6e-13
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 808 FHDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEED 847
F++NEL K ++ ++E+ Q A+ ++ Q Q E D
Sbjct: 49 FYENELKKERQVNQRIEKMMEQKAKITKEQM-KQAQAEVD 87
Score = 41 (19.5 bits), Expect = 4.7e-12, Sum P(3) = 4.7e-12
Identities = 19/80 (23%), Positives = 41/80 (51%)
Query: 835 DDEAGSQTQEEEDPDKDY-DYLLGMTFWS--LTMERK-NELLKKRDD---KMTELNILKK 887
D++AG + + + +K + G F+ L ER+ N+ ++K + K+T+ + +
Sbjct: 23 DNKAGMEGLDRDKINKIILETSKGSRFYENELKKERQVNQRIEKMMEQKAKITKEQMKQA 82
Query: 888 KAPTDLWSDDLDALREKDKI 907
+A D + DL+ RE ++
Sbjct: 83 QAEVDRLTVDLERSRELGRV 102
>UNIPROTKB|Q23CY2 [details] [associations]
symbol:TTHERM_00052080 "DNA topoisomerase II (N-terminal
region) protein" species:312017 "Tetrahymena thermophila SB210"
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0000819 "sister chromatid segregation" evidence=IBA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change" evidence=IBA]
[GO:0006312 "mitotic recombination" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR003594
InterPro:IPR013759 InterPro:IPR013760 PRINTS:PR00418 SMART:SM00433
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR014721 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 Gene3D:3.40.50.670 KO:K03164
ProtClustDB:CLSZ2498776 EMBL:GG662712 RefSeq:XP_001014904.1
ProteinModelPortal:Q23CY2 EnsemblProtists:EAR94448 GeneID:7827097
KEGG:tet:TTHERM_00052080 Uniprot:Q23CY2
Length = 523
Score = 169 (64.5 bits), Expect = 1.8e-18, Sum P(3) = 1.8e-18
Identities = 55/160 (34%), Positives = 83/160 (51%)
Query: 37 QKKSQLEHILLRPDTYIGSVEP--ITETMWLMNRETN-HMERREITYVPGLYKIFDEILV 93
Q K +L H+ D YIGS++P I ++ N+E +E +++ +PGL + EIL
Sbjct: 7 QMKFEL-HVRQCADMYIGSIQPEEIMTPIYSKNQENQITLEYKKVKIIPGLLTVIGEILT 65
Query: 94 NACDN--KQRDPKMNC-IKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
NA D +QR K I + ++ I + GKGIP+ K + +F+P +IF H T
Sbjct: 66 NARDVMFQQRKQKKGIQIYLDFDEIEGEIVLKTVGKGIPI--EKQDNIFIPELIFSHERT 123
Query: 151 SSNY---NDEEDKVTGVVPTMIFGHLLTS--SNYNDEEDK 185
SSNY N + K+TG +G LT+ S Y + E K
Sbjct: 124 SSNYQNTNLNDPKLTGGKNG--YGAKLTNVLSEYFEVETK 161
Score = 150 (57.9 bits), Expect = 1.8e-18, Sum P(3) = 1.8e-18
Identities = 41/117 (35%), Positives = 59/117 (50%)
Query: 438 QTKENMTL-QKGSFGS---TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVV 493
QTK+ L QK V KL+DA + + +C+L+ EGDSA S SGL
Sbjct: 298 QTKKQQVLKQKDQIKKMNINSVKKLQDAIKIRDRRT-ECSLLCAEGDSAMSFIRSGLTEQ 356
Query: 494 GRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRY 550
+ YG FPL+GKL+NV T +QI EN ++ L + L +++ + D Y
Sbjct: 357 QKQIYGRFPLKGKLMNVNSKTDRQIGENEILSQLQRSLNRYFTESLDSENDFNNQLY 413
Score = 147 (56.8 bits), Expect = 4.3e-16, Sum P(3) = 4.3e-16
Identities = 34/82 (41%), Positives = 49/82 (59%)
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNY---NDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCS 212
+++D + +P +IF H TSSNY N + K+TGG+NGYGAKL N+ S F VET
Sbjct: 106 EKQDNI--FIPELIFSHERTSSNYQNTNLNDPKLTGGKNGYGAKLTNVLSEYFEVETKYD 163
Query: 213 EYKKSFKQVWKDNMSKVTSPEI 234
FKQ+ + +K + P+I
Sbjct: 164 NL--IFKQLHYEGNTKHSEPQI 183
Score = 52 (23.4 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 417 QVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGST 453
Q + +++I + L+ P++ SQ+K+ + K + T
Sbjct: 235 QYRQNVFIIFSLLVHQPSYTSQSKDQLKTNKKDWFDT 271
Score = 45 (20.9 bits), Expect = 1.8e-18, Sum P(3) = 1.8e-18
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 1193 SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQLISLQQDKQLPAIQVI 1239
S DF + Y R + + M F + + Q +L Q + LP + +
Sbjct: 404 SENDFNNQLYKNWRENKIQEMKVEFMKNLMQSETLPQSETLPQSETL 450
Score = 42 (19.8 bits), Expect = 3.7e-18, Sum P(3) = 3.7e-18
Identities = 9/53 (16%), Positives = 29/53 (54%)
Query: 1124 ESNLRPSADKAESRKRTQTSQGTES----EERKGHLRRWRRKEEESTQTVQVE 1172
+S + +K +S+ +T+T + + +++K L++++ E + + + +E
Sbjct: 452 QSETQDETEKKQSKSKTKTKKNNDEIKIKKQQKQLLKQFKIDESKLNRRIFIE 504
Score = 38 (18.4 bits), Expect = 9.4e-18, Sum P(3) = 9.4e-18
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 1490 KSEAVNSEES--KSEAANPIESKQTVKTKESKLETVNISAPKPQASSTK 1536
+SE + E+ +SE + E KQ+ ++K I K Q K
Sbjct: 440 QSETLPQSETLPQSETQDETEKKQSKSKTKTKKNNDEIKIKKQQKQLLK 488
>UNIPROTKB|Q74H50 [details] [associations]
symbol:dinB "DNA polymerase IV" species:243231 "Geobacter
sulfurreducens PCA" [GO:0003674 "molecular_function" evidence=ND]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 GO:GO:0003684
GO:GO:0006281 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003887 KO:K02346 Gene3D:3.30.1490.100 SUPFAM:SSF100879
HOGENOM:HOG000082710 HSSP:P96022 ProtClustDB:CLSK827609
RefSeq:NP_951105.1 ProteinModelPortal:Q74H50 GeneID:2688550
KEGG:gsu:GSU0043 PATRIC:22022827 OMA:ANRIILH
BioCyc:GSUL243231:GH27-86-MONOMER Uniprot:Q74H50
Length = 413
Score = 195 (73.7 bits), Expect = 2.0e-18, Sum P(3) = 2.0e-18
Identities = 63/203 (31%), Positives = 97/203 (47%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
V S DE ++D + L L + A ++ I G TCS G NKL A+LA+
Sbjct: 102 VETFSIDEAFLDVTGSLA-LFGSAETIACRIKALIRHRFGLTCSIGIAPNKLLAKLASDM 160
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
KP+G + P+ ++ M IP+ DL G+G +LNSLG QTCG+L ++ L+
Sbjct: 161 KKPDGLTIIRPEEVTRLMEIIPIQDLCGIGVKTRKQLNSLGIQTCGELGRFPVEILRRTF 220
Query: 2019 GNKNGLTLYKHCRGEDDKELT-FEHQR--KSVSAEVNYGIRFQNNQEMETFLKQLAGEVE 2075
G G L+ +G DD + E KSV + +++ +L QL+ V
Sbjct: 221 G-VIGDRLHLMGKGIDDSPVVPVEEAEEVKSVGHSMTLDRDLTARRDILKYLLQLSEMVG 279
Query: 2076 KRLEEVKMKGKCITLKLMVRSAE 2098
+R + GK T+ L +R A+
Sbjct: 280 RRARRYGVAGK--TVHLTIRYAD 300
Score = 88 (36.0 bits), Expect = 2.0e-18, Sum P(3) = 2.0e-18
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 1608 SPSEP-EPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS 1650
S EP + I+HIDM+ FF SV + +P LQ +P+AV G G +
Sbjct: 2 SGGEPRQRTILHIDMNAFFASVEQQANPSLQGKPIAVV-GSGRT 44
Score = 72 (30.4 bits), Expect = 2.0e-18, Sum P(3) = 2.0e-18
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESF 1738
R +G+ GM AL+ CP+L +V D Y S + + T +E S+ +E+F
Sbjct: 54 RAFGVKTGMNKWEALQACPHLILVVGDNRKYTHTSTQINRIFRDFTPEVETFSI--DEAF 111
Query: 1739 LN 1740
L+
Sbjct: 112 LD 113
>TIGR_CMR|GSU_0043 [details] [associations]
symbol:GSU_0043 "ImpB/MucB/SamB family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0009650 "UV protection"
evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 GO:GO:0003684
GO:GO:0006281 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003887 KO:K02346 Gene3D:3.30.1490.100 SUPFAM:SSF100879
HOGENOM:HOG000082710 HSSP:P96022 ProtClustDB:CLSK827609
RefSeq:NP_951105.1 ProteinModelPortal:Q74H50 GeneID:2688550
KEGG:gsu:GSU0043 PATRIC:22022827 OMA:ANRIILH
BioCyc:GSUL243231:GH27-86-MONOMER Uniprot:Q74H50
Length = 413
Score = 195 (73.7 bits), Expect = 2.0e-18, Sum P(3) = 2.0e-18
Identities = 63/203 (31%), Positives = 97/203 (47%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
V S DE ++D + L L + A ++ I G TCS G NKL A+LA+
Sbjct: 102 VETFSIDEAFLDVTGSLA-LFGSAETIACRIKALIRHRFGLTCSIGIAPNKLLAKLASDM 160
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
KP+G + P+ ++ M IP+ DL G+G +LNSLG QTCG+L ++ L+
Sbjct: 161 KKPDGLTIIRPEEVTRLMEIIPIQDLCGIGVKTRKQLNSLGIQTCGELGRFPVEILRRTF 220
Query: 2019 GNKNGLTLYKHCRGEDDKELT-FEHQR--KSVSAEVNYGIRFQNNQEMETFLKQLAGEVE 2075
G G L+ +G DD + E KSV + +++ +L QL+ V
Sbjct: 221 G-VIGDRLHLMGKGIDDSPVVPVEEAEEVKSVGHSMTLDRDLTARRDILKYLLQLSEMVG 279
Query: 2076 KRLEEVKMKGKCITLKLMVRSAE 2098
+R + GK T+ L +R A+
Sbjct: 280 RRARRYGVAGK--TVHLTIRYAD 300
Score = 88 (36.0 bits), Expect = 2.0e-18, Sum P(3) = 2.0e-18
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 1608 SPSEP-EPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNS 1650
S EP + I+HIDM+ FF SV + +P LQ +P+AV G G +
Sbjct: 2 SGGEPRQRTILHIDMNAFFASVEQQANPSLQGKPIAVV-GSGRT 44
Score = 72 (30.4 bits), Expect = 2.0e-18, Sum P(3) = 2.0e-18
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESF 1738
R +G+ GM AL+ CP+L +V D Y S + + T +E S+ +E+F
Sbjct: 54 RAFGVKTGMNKWEALQACPHLILVVGDNRKYTHTSTQINRIFRDFTPEVETFSI--DEAF 111
Query: 1739 LN 1740
L+
Sbjct: 112 LD 113
>UNIPROTKB|P05652 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:224308 "Bacillus
subtilis subsp. subtilis str. 168" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 EMBL:AL009126 GenomeReviews:AL009126_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
EMBL:D26185 EMBL:X02369 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
PROSITE:PS50880 ProtClustDB:PRK05644 PIR:E22930 RefSeq:NP_387887.1
ProteinModelPortal:P05652 SMR:P05652 PRIDE:P05652
EnsemblBacteria:EBBACT00000000768 GeneID:939456 KEGG:bsu:BSU00060
PATRIC:18971459 GenoList:BSU00060 HOGENOM:HOG000075156 OMA:MDRILAN
BioCyc:BSUB:BSU00060-MONOMER BindingDB:P05652 ChEMBL:CHEMBL4324
Uniprot:P05652
Length = 638
Score = 184 (69.8 bits), Expect = 2.6e-18, Sum P(5) = 2.6e-18
Identities = 51/175 (29%), Positives = 91/175 (52%)
Query: 443 MTLQKGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKY--G 499
+T +K + + +P KL D + +K+ L + EGDSA G GRD++
Sbjct: 395 LTRRKSALEISNLPGKLADCS---SKDPSISELYIVEGDSA-----GGSAKQGRDRHFQA 446
Query: 500 VFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQ 559
+ PLRGK+LNV +A +IL N E+ +++ LG + + +++ RY +++IMTD
Sbjct: 447 ILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDF----NLEKARYHKVVIMTDA 502
Query: 560 DQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEE 614
D DG+HI+ L++ F + ++ ++ P+ K + + Y+ E EE
Sbjct: 503 DVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEYAYNDKELEE 557
Score = 118 (46.6 bits), Expect = 2.6e-18, Sum P(5) = 2.6e-18
Identities = 50/179 (27%), Positives = 81/179 (45%)
Query: 185 KVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTK 244
KV+GG +G GA + N S++ ++ + K +Q +K + VT EI + T
Sbjct: 112 KVSGGLHGVGASVVNALSTE--LDVTVHRDGKIHRQTYKRGVP-VTDLEIIGETDHTGTT 168
Query: 245 ITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDY-----V 299
F PD F T+ + D DL+ R + A TK V + + ++ + +Y +
Sbjct: 169 THFVPDPEIFSETT-EYDY-DLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGI 226
Query: 300 KLYTD---RQDE--DGDPVKIIYENVNPRWEVAIAPSDRGFQQV-SFVNSIATTKGGRH 352
K Y + R E +P+ I E EVA+ +D + SF N+I T +GG H
Sbjct: 227 KSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTH 285
Score = 74 (31.1 bits), Expect = 2.6e-18, Sum P(5) = 2.6e-18
Identities = 27/84 (32%), Positives = 42/84 (50%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVN-QETNTISVWNNGKGIPVVEHKDEKMFVP 141
GL+ + EI+ N+ D C I + ++ N+I+V +NG+GIPV H EKM P
Sbjct: 37 GLHHLVWEIVDNSIDEALAG---YCTDINIQIEKDNSITVVDNGRGIPVGIH--EKMGRP 91
Query: 142 TM--IFGHLLTSSNYNDEEDKVTG 163
+ I L ++ KV+G
Sbjct: 92 AVEVIMTVLHAGGKFDGSGYKVSG 115
Score = 40 (19.1 bits), Expect = 2.6e-18, Sum P(5) = 2.6e-18
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 808 FHDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEE-DP 848
++D EL + KT PQ + Q +G + +Q E DP
Sbjct: 550 YNDKELEELLKTLPQTPKPGLQRYKGLGEMNATQLWETTMDP 591
Score = 37 (18.1 bits), Expect = 2.6e-18, Sum P(5) = 2.6e-18
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 42 LEHILLRPDTYIGS 55
LE + RP YIGS
Sbjct: 19 LEAVRKRPGMYIGS 32
>TIGR_CMR|CBU_0004 [details] [associations]
symbol:CBU_0004 "DNA gyrase, B subunit" species:227377
"Coxiella burnetii RSA 493" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898 InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0006261 EMBL:AE016828 GenomeReviews:AE016828_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:NP_819060.2 ProteinModelPortal:Q83FD5
PRIDE:Q83FD5 GeneID:1207924 KEGG:cbu:CBU_0004 PATRIC:17928685
BioCyc:CBUR227377:GJ7S-5-MONOMER Uniprot:Q83FD5
Length = 810
Score = 207 (77.9 bits), Expect = 2.8e-18, Sum P(3) = 2.8e-18
Identities = 56/165 (33%), Positives = 86/165 (52%)
Query: 442 NMTLQKGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK-Y- 498
+MT +K +P KL D + K+ C L L EGDSA G RD+ Y
Sbjct: 395 DMTRRKNVLDLGGLPGKLADCQE---KDPALCELFLVEGDSA-----GGSAKQARDRRYQ 446
Query: 499 GVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTD 558
+ PL+GK+LNV +A ++L +AE+ L+ LG K+ + LRY R+++MTD
Sbjct: 447 AILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGKEEYNPDK---LRYHRIILMTD 503
Query: 559 QDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREE 603
D DGSHI+ L++ F + P L+ + P+ K K+++E
Sbjct: 504 ADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPPLYKVKKSKQE 548
Score = 93 (37.8 bits), Expect = 2.8e-18, Sum P(3) = 2.8e-18
Identities = 42/180 (23%), Positives = 77/180 (42%)
Query: 185 KVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDF-T 243
KV+GG +G G + N S + + + + + Q +K M +P +G D T
Sbjct: 116 KVSGGLHGVGISVVNALSEELYM--TIRQNGNVYTQTYK--MGVPQAPLAVTGKSDKTGT 171
Query: 244 KITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDY---VK 300
+I F P F T D++ +R + A V++ L E+ + +Y +K
Sbjct: 172 EIRFKPSNAIFSNTEFH---YDILAKRLRELAFLNLGVRIELTDERSGRGDIFEYEGGIK 228
Query: 301 LYTDRQDEDGDPVK--IIYENVNPR---WEVAIAPSDRGFQQV--SFVNSIATTKGGRHV 353
+ + ++ P+ + + + EVA+ +D GFQ+ F N+I GG H+
Sbjct: 229 AFVEHLNKKKTPIHSDVFHFSTEKNDIVVEVAMQWND-GFQETIFCFTNNIPQNDGGTHL 287
Score = 69 (29.3 bits), Expect = 2.8e-18, Sum P(3) = 2.8e-18
Identities = 21/81 (25%), Positives = 40/81 (49%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GL+ + E++ N+ D + I +T++ + ++SV +NG+GIP H +E
Sbjct: 41 GLHHMVFEVVDNSIDEALAG-FCSHIWVTIHAD-GSVSVRDNGRGIPTDIHPEEGRSAAE 98
Query: 143 MIFGHLLTSSNYNDEEDKVTG 163
+I L ++ KV+G
Sbjct: 99 VIMTVLHAGGKFDKNAYKVSG 119
>UNIPROTKB|Q23CP4 [details] [associations]
symbol:TTHERM_01335310 "DNA topoisomerase 2" species:312017
"Tetrahymena thermophila SB210" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR003594 InterPro:IPR013759
InterPro:IPR013760 PRINTS:PR00418 SMART:SM00433 GO:GO:0005524
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR014721 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 KO:K03164 EMBL:GG662714
RefSeq:XP_001014550.2 ProteinModelPortal:Q23CP4
EnsemblProtists:EAR94305 GeneID:7832067 KEGG:tet:TTHERM_01335310
ProtClustDB:CLSZ2498776 Uniprot:Q23CP4
Length = 784
Score = 169 (64.5 bits), Expect = 3.7e-18, Sum P(5) = 3.7e-18
Identities = 55/160 (34%), Positives = 83/160 (51%)
Query: 37 QKKSQLEHILLRPDTYIGSVEP--ITETMWLMNRETN-HMERREITYVPGLYKIFDEILV 93
Q K +L H+ D YIGS++P I ++ N+E +E +++ +PGL + EIL
Sbjct: 7 QMKFEL-HVRQCADMYIGSIQPEEIMTPIYSKNQENQITLEYKKVKIIPGLLTVIGEILT 65
Query: 94 NACDN--KQRDPKMNC-IKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
NA D +QR K I + ++ I + GKGIP+ K + +F+P +IF H T
Sbjct: 66 NARDVMFQQRKQKKGIQIYLDFDEIEGEIVLKTVGKGIPI--EKQDNIFIPELIFSHERT 123
Query: 151 SSNY---NDEEDKVTGVVPTMIFGHLLTS--SNYNDEEDK 185
SSNY N + K+TG +G LT+ S Y + E K
Sbjct: 124 SSNYQNTNLNDPKLTGGKNG--YGAKLTNVLSEYFEVETK 161
Score = 150 (57.9 bits), Expect = 3.7e-18, Sum P(5) = 3.7e-18
Identities = 41/117 (35%), Positives = 59/117 (50%)
Query: 438 QTKENMTL-QKGSFGS---TCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVV 493
QTK+ L QK V KL+DA + + +C+L+ EGDSA S SGL
Sbjct: 297 QTKKQQVLKQKDQIKKMNINSVKKLQDAIKIRDRRT-ECSLLCAEGDSAMSFIRSGLTEQ 355
Query: 494 GRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRY 550
+ YG FPL+GKL+NV T +QI EN ++ L + L +++ + D Y
Sbjct: 356 QKQIYGRFPLKGKLMNVNSKTDRQIGENEILSQLQRSLNRYFTESLDSENDFNNQLY 412
Score = 136 (52.9 bits), Expect = 9.1e-15, Sum P(5) = 9.1e-15
Identities = 32/76 (42%), Positives = 45/76 (59%)
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNY---NDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCS 212
+++D + +P +IF H TSSNY N + K+TGG+NGYGAKL N+ S F VET
Sbjct: 106 EKQDNI--FIPELIFSHERTSSNYQNTNLNDPKLTGGKNGYGAKLTNVLSEYFEVETKYD 163
Query: 213 EYKKSFKQVWKDNMSK 228
FKQ+ + +K
Sbjct: 164 NL--IFKQLHYEGNTK 177
Score = 52 (23.4 bits), Expect = 1.4e-08, Sum P(5) = 1.4e-08
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 417 QVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGST 453
Q + +++I + L+ P++ SQ+K+ + K + T
Sbjct: 234 QYRQNVFIIFSLLVHQPSYTSQSKDQLKTNKKDWFDT 270
Score = 50 (22.7 bits), Expect = 3.7e-18, Sum P(5) = 3.7e-18
Identities = 20/95 (21%), Positives = 40/95 (42%)
Query: 2003 CGDLQNISLKRLQNEVG--NKNGL-TLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQN 2059
C +L N+ L N++G +GL + +C + +L + G N
Sbjct: 685 CINLSNLELLLFNNQIGAIGASGLGSALTNCINLSNLKLDLSRNQIGAIGASGLGSALAN 744
Query: 2060 NQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMV 2094
+ LK + + + +++K+K KC+ K +V
Sbjct: 745 CINLSN-LKLIL-DSKNDSQKLKVKSKCLKSKRLV 777
Score = 45 (20.9 bits), Expect = 3.7e-18, Sum P(5) = 3.7e-18
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 1193 SNEDFLGEFYNKSRLHHLSTMGSMFKQYVNQLISLQQDKQLPAIQVI 1239
S DF + Y R + + M F + + Q +L Q + LP + +
Sbjct: 403 SENDFNNQLYKNWRENKIQEMKVEFMKNLMQSETLPQSETLPQSETL 449
Score = 45 (20.9 bits), Expect = 3.7e-18, Sum P(5) = 3.7e-18
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 1490 KSEAVNSEESKSEAANPIESKQTVKTKESKLETVNISAPKPQASSTK 1536
+SE + E++ E + E KQ+ ++K I K Q K
Sbjct: 457 QSETLPQSETQDETQDETEKKQSKSKTKTKKNNNEIKIKKQQKQLLK 503
Score = 44 (20.5 bits), Expect = 1.5e-17, Sum P(5) = 1.5e-17
Identities = 20/84 (23%), Positives = 43/84 (51%)
Query: 1967 LTPQIISDFMLNIPLSD--LPGVGHSLLFK-LNSLGAQ--TCGDLQNISLKRLQNEVGNK 2021
L+ Q++ + N + D + G+G ++ + + LG+ C +L N++L N++G++
Sbjct: 540 LSHQVLHIDLDNDQIGDEGVSGLGFAIGDEGASGLGSALANCINLSNLTLYLDSNQIGDE 599
Query: 2022 --NGLTL-YKHCRGEDDKELTFEH 2042
+GL +C + +L EH
Sbjct: 600 GVSGLGFALANCINLSNLKLNLEH 623
>UNIPROTKB|Q8EYL9 [details] [associations]
symbol:LA_4194 "DNA gyrase subunit B" species:189518
"Leptospira interrogans serovar Lai str. 56601" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 KO:K02470
Gene3D:3.40.50.670 EMBL:AE010300 GenomeReviews:AE010300_GR
HSSP:P06786 RefSeq:NP_714374.1 ProteinModelPortal:Q8EYL9
GeneID:1153536 KEGG:lil:LA_4194 PATRIC:22389227
HOGENOM:HOG000040411 OMA:EATIESK ProtClustDB:CLSK575166
BioCyc:LINT189518:GJBB-3320-MONOMER Uniprot:Q8EYL9
Length = 711
Score = 190 (71.9 bits), Expect = 3.8e-18, Sum P(3) = 3.8e-18
Identities = 48/141 (34%), Positives = 75/141 (53%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK-YGVFPLRGKLLNVREA 513
+PKL G + L + EGDSA ++GL K +G+FPLRGK LN +
Sbjct: 477 IPKLMPPT--GKQGDPGRVLFVAEGDSA----IAGLRPARNPKLHGLFPLRGKPLNCKGL 530
Query: 514 THKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINF 573
+ + + N E+ N+V I+GL +K V+ + L Y ++ I+TD D DG I+ L+++F
Sbjct: 531 SIAKAIANEELKNIVAIVGLPLDQK---VKSLDELNYEKVSIITDADFDGYAIRSLMLSF 587
Query: 574 IHHNWPTLLRLPFLEEFITPI 594
+ WP L L F+ P+
Sbjct: 588 FYEYWPELFELGFIHISSAPL 608
Score = 125 (49.1 bits), Expect = 3.8e-18, Sum P(3) = 3.8e-18
Identities = 65/259 (25%), Positives = 110/259 (42%)
Query: 20 SPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIG--SVEPITETMWLMNRETNH-MERR 76
S K K S E+ ++K S +EH+ +R ++G S + + N E + +
Sbjct: 2 STDKTKVKEKSSQERNFKKLSNVEHVRMRTGMWLGQNSASTFEQHFFRKNNEGKYEIVHE 61
Query: 77 EITYVPGLYKIFDEILVNACDN---KQRD---P---KMNCIKITVNQETNTISVWNNGKG 127
E+ VP K DE +NA D Q+D P KM+ + + ++ + +++ +NG+G
Sbjct: 62 ELEDVPAKLKCLDEACMNAVDEYRKNQKDKSIPEKDKMSKLIVQLSSDRKCVTIADNGRG 121
Query: 128 IPVVEHKDEKMFVPTMIFGHLLTSSNYND--EEDKVTGVVPTMIFGHLLTSSNYNDEEDK 185
IP + ++ HL+ N++D ++D V G I + SNY K
Sbjct: 122 IPATNAEG--------VYLHLMYGENFDDHVKQDHVAGQNGVGI-SLVRMVSNYF----K 168
Query: 186 VTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQ-----VWKDNMSKVTSPEIKSGSKD 240
V NG K +F+ V+ YK S + ++ D K T + + KD
Sbjct: 169 VKTVNNGSSFK--KLFTVHDDVKKQIRSYKLSKEDTERVFLYFDEHGKFTDCNLLT--KD 224
Query: 241 DFTKITFTPDLTKFKMTSL 259
K++ P L K M L
Sbjct: 225 QIDKLS--PLLKKTNMQEL 241
Score = 51 (23.0 bits), Expect = 3.8e-18, Sum P(3) = 3.8e-18
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 418 VKNHIWIFINCLIVNPTFDSQTK 440
V+N +++N ++NP F SQ K
Sbjct: 395 VRNCFHMYVNARLLNPRFKSQDK 417
Score = 37 (18.1 bits), Expect = 3.4e-09, Sum P(3) = 3.4e-09
Identities = 34/139 (24%), Positives = 61/139 (43%)
Query: 223 KDNMSKVTSPEIKSGSKDDF-TKITFTPDLTKFKMTSLDKDM-VDLITRRAYDAAASTKD 280
K NM ++ I+ SK+D T + F +L +LD VDL+ + D A +
Sbjct: 235 KTNMQEL----IEKASKEDHGTSVEF--ELNPKYFNNLDISFNVDLMKQYLQDIAMTNPG 288
Query: 281 VKV-FL-NG--EKLPVKNFQDYVKLYTDRQDEDGDPVKI-IYENVNPRWEVAIAPSDRGF 335
++V F+ G EK K D + ++D D V ++ + I +
Sbjct: 289 LEVQFVFKGKKEKYKFKKGLDEIFSHSDLVYYKMDYVAPGSASQLHLETYLVIGQN---- 344
Query: 336 QQVSFVNSIATTKGGRHVD 354
+ +++VNSI +GG ++
Sbjct: 345 KNLTWVNSIFAPQGGSAIE 363
>UNIPROTKB|O08399 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:243276
"Treponema pallidum subsp. pallidum str. Nichols" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01898 InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 EMBL:AE000520
GenomeReviews:AE000520_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF ProtClustDB:PRK05644
EMBL:U78094 PIR:H71254 RefSeq:NP_219443.1 ProteinModelPortal:O08399
IntAct:O08399 GeneID:2610807 KEGG:tpa:TP1006 PATRIC:20532137
Uniprot:O08399
Length = 637
Score = 192 (72.6 bits), Expect = 7.1e-18, Sum P(4) = 7.1e-18
Identities = 46/154 (29%), Positives = 78/154 (50%)
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPLRGKLLNVREATHKQILE 520
D K+ C + + EGDSA G GRD + PL GK+LNV + ++L
Sbjct: 413 DCSLKDPAKCEVYIVEGDSA-----GGSAKKGRDSKTQAILPLWGKMLNVEKTRLDKVLH 467
Query: 521 NAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPT 580
N ++ ++ LG K + D+ +RY +++IM D D DGSHI+ L++ F P
Sbjct: 468 NEKLQPIIATLGTGVGKDF----DLTRIRYHKVIIMADADVDGSHIRTLLLTFFFRYLPQ 523
Query: 581 LLRLPFLEEFITPIIKATKAREELSFYSLPEFEE 614
++ ++ + P+ + +++EL YS E +E
Sbjct: 524 IIEAGYVYLAMPPLYRIAWSKKELYVYSDTERDE 557
Score = 90 (36.7 bits), Expect = 7.1e-18, Sum P(4) = 7.1e-18
Identities = 50/204 (24%), Positives = 86/204 (42%)
Query: 168 MIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMS 227
++ L ++ + KV+GG +G G + N S VE + Y+ + K N+
Sbjct: 92 VVLTKLHAGGKFDKKSYKVSGGLHGVGVSVVNALS--LWVEVTV--YRDGAEYYQKFNVG 147
Query: 228 KVTSPEIKSG-SKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLN 286
+P K G S+ T I + D + FK T + D D++ R + A V + L
Sbjct: 148 MPLAPVEKRGVSEKRGTIIRWQADPSIFKET-VAYDF-DVLLTRLRELAFLNSTVVIQLR 205
Query: 287 GEKLPVKN-----FQDYVKLYTD--RQDEDGDPVKIIY---ENVNPRWEVAIAPSDRGFQ 336
E+L F+ ++ + + + P + +Y + EVA+ D +
Sbjct: 206 DERLATAKQVEFAFEGGIRHFVSYLNRGKSVVPERPLYIEGSKSDVLVEVALQYHDGYTE 265
Query: 337 QV-SFVNSIATTKGGRHVDAVVDA 359
V SFVN I T +GG H++ A
Sbjct: 266 NVQSFVNDINTREGGTHLEGFKSA 289
Score = 82 (33.9 bits), Expect = 7.1e-18, Sum P(4) = 7.1e-18
Identities = 24/82 (29%), Positives = 39/82 (47%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQET-NTISVWNNGKGIPVVEHKDEKMFVP 141
GL+ + E++ N D C +ITV E N + V +NG+GIPV H E +
Sbjct: 34 GLHHLVYEVVDNCIDEAMAG---YCDRITVVLEQGNVVRVEDNGRGIPVDVHPHEGVSAL 90
Query: 142 TMIFGHLLTSSNYNDEEDKVTG 163
++ L ++ + KV+G
Sbjct: 91 EVVLTKLHAGGKFDKKSYKVSG 112
Score = 42 (19.8 bits), Expect = 7.1e-18, Sum P(4) = 7.1e-18
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 42 LEHILLRPDTYIGSVEP 58
LE + RP YIGS P
Sbjct: 16 LEAVRKRPGMYIGSTGP 32
>UNIPROTKB|A6QNV6 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 GO:GO:0005634 GO:GO:0003684
GO:GO:0003887 GO:GO:0006297 eggNOG:COG0389 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879
GeneTree:ENSGT00530000062942 HOGENOM:HOG000082711 KO:K03511
CTD:51426 HOVERGEN:HBG101212 OMA:TCTELYQ OrthoDB:EOG4Z8XVV
EMBL:DAAA02027742 EMBL:DAAA02027743 EMBL:BC149024 IPI:IPI00867010
RefSeq:NP_001095728.1 UniGene:Bt.38144 SMR:A6QNV6 STRING:A6QNV6
Ensembl:ENSBTAT00000005265 GeneID:541218 KEGG:bta:541218
InParanoid:A6QNV6 NextBio:20879073 Uniprot:A6QNV6
Length = 877
Score = 181 (68.8 bits), Expect = 1.0e-17, Sum P(3) = 1.0e-17
Identities = 51/180 (28%), Positives = 89/180 (49%)
Query: 1929 LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTP--QIISDFMLNIPLSDLPG 1986
+R I ++T T S G N + A++ + K KPNGQ+ + P Q + DF+ ++P+ + G
Sbjct: 304 IRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSG 363
Query: 1987 VGHSLLFKLNSLGAQTCGDL--QNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQR 2044
+G L +LG TC +L Q L L +E + L + G L + +R
Sbjct: 364 IGKVTEKMLKALGIITCTELYQQRALLSLLFSETSWHHFLHI---SLGLGSTHLARDGER 420
Query: 2045 KSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREAS 2104
KS+S E + +E + ++L E+ + L++ +KG+ +T+KL + E AS
Sbjct: 421 KSMSVERTFS-EISKAEEQYSLCQELCSELAQDLQKKGLKGRTVTIKLKNVNFEVKTRAS 479
Score = 109 (43.4 bits), Expect = 1.0e-17, Sum P(3) = 1.0e-17
Identities = 37/112 (33%), Positives = 62/112 (55%)
Query: 1540 NEDFLG-EFYNKSRLHHL---STMGSMFKQYVNELREKHDGVFRGIEAIRKWK---TSLG 1592
N++ G E +K +++ + +T GS F Y NEL+ K V + IE + + K TS
Sbjct: 29 NDNKAGMEGLDKEKINKIIMEATKGSRF--YGNELK-KEKQVNQRIENMMQQKAKITSEQ 85
Query: 1593 ITEDEDLEETFSDNPSPSEP-EPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
+ + + + F+ S I+HIDMD F+ +V +R +PEL+D+P+AV
Sbjct: 86 LRKAQLQVDRFAVELEQSRDLNSTIVHIDMDAFYAAVEMRDNPELKDKPIAV 137
Score = 76 (31.8 bits), Expect = 1.0e-17, Sum P(3) = 1.0e-17
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 1677 NTREYGLGNGMFVGHALKK-CPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTN 1735
+ R +G+ M G K+ CP L IVP +F+ Y+ VS + ++ N A+SL +
Sbjct: 149 HARRFGVRAAM-PGFIAKRLCPQLIIVPPNFDKYQAVSREVKEILTDYDPNFMAMSL--D 205
Query: 1736 ESFLN 1740
E++LN
Sbjct: 206 EAYLN 210
Score = 42 (19.8 bits), Expect = 6.7e-11, Sum P(3) = 6.7e-11
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 808 FHDNELAKPQKTGPQLERQERQAAE 832
F+ NEL K ++ ++E +Q A+
Sbjct: 56 FYGNELKKEKQVNQRIENMMQQKAK 80
Score = 41 (19.5 bits), Expect = 8.5e-11, Sum P(3) = 8.5e-11
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 1648 GNSSKVREGVDRQAEFDIYRQRTMNRMGLNTREYGL 1683
G++ + +G + D Y+ + RMGLN + G+
Sbjct: 2 GSTKEKSDGTKEKN--DNYKDDLLLRMGLNDNKAGM 35
>UNIPROTKB|Q5Q9G5 [details] [associations]
symbol:POLK "DNA polymerase kappa" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 EMBL:AC010245
EMBL:AC116341 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082711
UniGene:Hs.732105 HGNC:HGNC:9183 EMBL:AC026424 EMBL:AY769932
IPI:IPI00967663 SMR:Q5Q9G5 STRING:Q5Q9G5 Ensembl:ENST00000504026
UCSC:uc003kee.3 HOVERGEN:HBG056846 Uniprot:Q5Q9G5
Length = 461
Score = 160 (61.4 bits), Expect = 2.9e-17, Sum P(3) = 2.9e-17
Identities = 42/159 (26%), Positives = 80/159 (50%)
Query: 1929 LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTP--QIISDFMLNIPLSDLPG 1986
+R I ++T T S G N + A++ + K KPNGQ+ + P Q + DF+ ++P+ + G
Sbjct: 297 IRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSG 356
Query: 1987 VGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCR-GEDDKELTFEHQRK 2045
+G L +LG TC +L + L + + ++ + H G LT + +RK
Sbjct: 357 IGKVTEKMLKALGIITCTELYQ--QRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERK 414
Query: 2046 SVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMK 2084
S+S E + +E + ++L E+ + L++ ++K
Sbjct: 415 SMSVERTFS-EINKAEEQYSLCQELCSELAQDLQKERLK 452
Score = 108 (43.1 bits), Expect = 2.9e-17, Sum P(3) = 2.9e-17
Identities = 37/112 (33%), Positives = 62/112 (55%)
Query: 1540 NEDFLG-EFYNKSRLHHL---STMGSMFKQYVNELREKHDGVFRGIEAIRKWK---TSLG 1592
N++ G E +K +++ + +T GS F Y NEL+ K V + IE + + K TS
Sbjct: 22 NDNKAGMEGLDKEKINKIIMEATKGSRF--YGNELK-KEKQVNQRIENMMQQKAQITSQQ 78
Query: 1593 ITEDEDLEETFSDNPSPSEP-EPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
+ + + + F+ S I+HIDMD F+ +V +R +PEL+D+P+AV
Sbjct: 79 LRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAV 130
Score = 82 (33.9 bits), Expect = 2.9e-17, Sum P(3) = 2.9e-17
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 1677 NTREYGLGNGMFVGHALKK-CPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTN 1735
+ R +G+ M G K+ CP L IVP +F+ Y+ VS + ++A N A+SL +
Sbjct: 142 HARRFGVRAAM-PGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSL--D 198
Query: 1736 ESFLNALPE-DIRQEVLDDLSR 1756
E++LN + RQ +D R
Sbjct: 199 EAYLNITKHLEERQNWPEDKRR 220
Score = 43 (20.2 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 808 FHDNELAKPQKTGPQLERQERQAAE 832
F+ NEL K ++ ++E +Q A+
Sbjct: 49 FYGNELKKEKQVNQRIENMMQQKAQ 73
Score = 41 (19.5 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 1664 DIYRQRTMNRMGLNTREYGL 1683
D Y+ + RMGLN + G+
Sbjct: 9 DSYKDDLLLRMGLNDNKAGM 28
Score = 39 (18.8 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 22/103 (21%), Positives = 42/103 (40%)
Query: 1878 QEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFAS----YLRETI 1933
Q ++ ++ K S K+ + + C++L Q+ +L L F+ Y I
Sbjct: 340 QAVMDFIKDLPIRKVSGIGKVTEKMLKALGIITCTELYQQRALLSLLFSETSWHYFLH-I 398
Query: 1934 AKETGCTCSTGFGSNKLQA--RLATKKAKPNGQFHLTPQIISD 1974
+ G T T G K + R ++ K Q+ L ++ S+
Sbjct: 399 SLGLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSE 441
>UNIPROTKB|E9PST4 [details] [associations]
symbol:Polk "Protein Polk" species:10116 "Rattus
norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 RGD:620058 GO:GO:0005737
GO:GO:0046872 GO:GO:0003684 GO:GO:0006260 GO:GO:0006281
GO:GO:0003887 Gene3D:3.30.1490.100 SUPFAM:SSF100879 IPI:IPI00777177
Ensembl:ENSRNOT00000061462 ArrayExpress:E9PST4 Uniprot:E9PST4
Length = 771
Score = 179 (68.1 bits), Expect = 3.2e-17, Sum P(3) = 3.2e-17
Identities = 55/207 (26%), Positives = 97/207 (46%)
Query: 1901 AVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAK 1960
A+S DE Y++ +Q LQE P Y K C G N + A++ + K K
Sbjct: 193 AMSLDEAYLNITQHLQERQGWPEDKRRYF----IKMGNCR-KIGIAPNTMLAKVCSDKNK 247
Query: 1961 PNGQFHLTPQ--IISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
PNGQ+ + P + DF+ ++P+ + G+G L +LG TC +L + L + +
Sbjct: 248 PNGQYQIVPSRSAVMDFIKDLPIRKVSGIGKVTEKMLLALGIVTCTELYQ--QRALLSLL 305
Query: 2019 GNKNGLTLYKHCR-GEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKR 2077
+++ + H G +L + +RKS+S E + +E + ++L E+
Sbjct: 306 FSESSWHYFLHVALGLGSTDLARDGERKSMSVERTFS-EINKTEEQYSLCQELCTELAHD 364
Query: 2078 LEEVKMKGKCITLKLMVRSAEAPREAS 2104
L++ +KG+ +T+KL E AS
Sbjct: 365 LQKEGLKGRTVTIKLKNVDFEVKTRAS 391
Score = 99 (39.9 bits), Expect = 3.2e-17, Sum P(3) = 3.2e-17
Identities = 34/112 (30%), Positives = 62/112 (55%)
Query: 1540 NEDFLG-EFYNKSRLHHL---STMGSMFKQYVNELREKHDGVFRGIEAIRKWK---TSLG 1592
N++ G E +K +++ + +T GS F Y NEL+ K V + IE + + K TS
Sbjct: 21 NDNKAGMEGLDKEKINKIIMEATKGSRF--YGNELK-KEKQVNQRIENMMQQKAQITSQQ 77
Query: 1593 ITEDEDLEETFSDNPSPSEP-EPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
+ + + + F+ + I+H+DMD F+ +V +R +PEL+++P+AV
Sbjct: 78 LRKAQLQVDRFAMELERNRNLNNTIVHVDMDAFYAAVEMRDNPELKEKPIAV 129
Score = 81 (33.6 bits), Expect = 3.2e-17, Sum P(3) = 3.2e-17
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 1677 NTREYGLGNGMFVGHALKK-CPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTN 1735
+ R +G+ M G K+ CP L IVP +F+ Y+ VS + ++A N A+SL +
Sbjct: 141 HARRFGVRAAM-PGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSL--D 197
Query: 1736 ESFLN 1740
E++LN
Sbjct: 198 EAYLN 202
Score = 43 (20.2 bits), Expect = 1.6e-11, Sum P(3) = 1.6e-11
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 808 FHDNELAKPQKTGPQLERQERQAAE 832
F+ NEL K ++ ++E +Q A+
Sbjct: 48 FYGNELKKEKQVNQRIENMMQQKAQ 72
Score = 39 (18.8 bits), Expect = 4.1e-11, Sum P(3) = 4.1e-11
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 1657 VDRQAEFDIYRQRTMNRMGLNTREYGL 1683
+D E + ++ + RMGLN + G+
Sbjct: 1 MDNTKEKNNFKDALLLRMGLNDNKAGM 27
>UNIPROTKB|F1PDA5 [details] [associations]
symbol:POLI "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
Gene3D:3.30.1490.100 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
OMA:VFYELPE EMBL:AAEX03000145 Ensembl:ENSCAFT00000000242
Uniprot:F1PDA5
Length = 702
Score = 188 (71.2 bits), Expect = 3.5e-17, Sum P(4) = 3.5e-17
Identities = 71/259 (27%), Positives = 123/259 (47%)
Query: 1875 EAYQEMLSCVQSAMKHKPSSE-SKI-VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRET 1932
E + ++ V+ ++ S E S + VS + Y++ +L L Q A+ +RE
Sbjct: 113 ENFVDLTEMVEKRLQQLQSDELSALTVSGHVYNNQYINLHDILHIRLLVGSQIAAEMREA 172
Query: 1933 IAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIP-LSDLPGVGHSL 1991
+ + G T G SNKL A+L + KPN Q L P+ + ++ + ++PG+G+
Sbjct: 173 MYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQVLIQSLNHVKEMPGIGYKT 232
Query: 1992 LFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEV 2051
+L +LG + DLQ S K L+ E+G + K GED+ +T +S S E
Sbjct: 233 AKRLEALGISSVYDLQTFSSKILEKELGISVAQRIQKLSFGEDNSPVTPSGPPQSFSEED 292
Query: 2052 NYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKG-KCITLKLMVR--SAE--APREASKF 2106
++ + + E++ +++L + L V G K T++L++R S+E RE+ +
Sbjct: 293 SFK-KCSSEVEVKNKIEELLASL---LNRVCQDGRKPHTIRLIIRRYSSENHCSRESRQC 348
Query: 2107 ---------LGHGVCDYIT 2116
LG G CD IT
Sbjct: 349 PIPSHIIQKLGTGNCDVIT 367
Score = 89 (36.4 bits), Expect = 3.5e-17, Sum P(4) = 3.5e-17
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 1607 PSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
P P VI+H+D+DCF+ V + +PEL+ +P+ V
Sbjct: 7 PEGGPPARVIVHVDLDCFYAQVEMISNPELKGKPLGV 43
Score = 70 (29.7 bits), Expect = 3.5e-17, Sum P(4) = 3.5e-17
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVP-YDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNES 1737
R+ G+ M V A +KCP L +V D Y+E+SY + L+ + +E + N
Sbjct: 57 RKLGVKKLMNVRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFV 116
Query: 1738 FLNALPEDIRQEVL-DDLS 1755
L + E Q++ D+LS
Sbjct: 117 DLTEMVEKRLQQLQSDELS 135
Score = 55 (24.4 bits), Expect = 3.5e-17, Sum P(4) = 3.5e-17
Identities = 37/127 (29%), Positives = 56/127 (44%)
Query: 2138 RSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIVNK--LKVDPVE-LRG 2194
R+ EAPR+ + F D S LP I Q ++ KE+ + + L E ++G
Sbjct: 459 RTGEAPRDTADFSKEKDSDEFPLRS-LPEGIDQ--EVFKELPVDIQEEILSGKSGEKVQG 515
Query: 2195 IGIQVSKLEHQSKTLATIDTFFTNKG------KPPDQLNNPRPGPSNSTITPGPS--NST 2246
G L H S+ + + FF+ K P D L+N + S S+ PG S NS+
Sbjct: 516 KGSLNCPL-HASRGVLS---FFSTKQMQDSPLNPKDHLSNSKQISSVSSCEPGTSGLNSS 571
Query: 2247 LPPGPSN 2253
PS+
Sbjct: 572 SSSPPSS 578
Score = 38 (18.4 bits), Expect = 1.8e-15, Sum P(4) = 1.8e-15
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 2138 RSAEAPREASKFLGHGVCDYIT 2159
R P + LG G CD IT
Sbjct: 346 RQCPIPSHIIQKLGTGNCDVIT 367
Score = 38 (18.4 bits), Expect = 8.2e-09, Sum P(4) = 8.2e-09
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 876 DDKMTELNILKKKAPTDLWSDDLDAL 901
D+ +L + +K L SD+L AL
Sbjct: 112 DENFVDLTEMVEKRLQQLQSDELSAL 137
Score = 37 (18.1 bits), Expect = 8.2e-09, Sum P(4) = 8.2e-09
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 506 KLLNVREATHK---QILENAE 523
KL+NVR+A K +L N E
Sbjct: 63 KLMNVRDAKEKCPQLVLVNGE 83
>UNIPROTKB|D6RAE5 [details] [associations]
symbol:POLK "DNA polymerase kappa" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 EMBL:CH471084
EMBL:AC010245 EMBL:AC116341 GO:GO:0003887 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879
HOGENOM:HOG000082711 UniGene:Hs.732105 HGNC:HGNC:9183 EMBL:AC026424
IPI:IPI00966124 SMR:D6RAE5 Ensembl:ENST00000503479 Uniprot:D6RAE5
Length = 396
Score = 166 (63.5 bits), Expect = 6.7e-17, Sum P(3) = 6.7e-17
Identities = 44/165 (26%), Positives = 83/165 (50%)
Query: 1929 LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTP--QIISDFMLNIPLSDLPG 1986
+R I ++T T S G N + A++ + K KPNGQ+ + P Q + DF+ ++P+ + G
Sbjct: 231 IRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSG 290
Query: 1987 VGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCR-GEDDKELTFEHQRK 2045
+G L +LG TC +L + L + + ++ + H G LT + +RK
Sbjct: 291 IGKVTEKMLKALGIITCTELYQ--QRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERK 348
Query: 2046 SVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITL 2090
S+S E + +E + ++L E+ + L++ ++K K + L
Sbjct: 349 SMSVERTFS-EINKAEEQYSLCQELCSELAQDLQKERLKKKYLPL 392
Score = 94 (38.1 bits), Expect = 6.7e-17, Sum P(3) = 6.7e-17
Identities = 16/28 (57%), Positives = 24/28 (85%)
Query: 1616 IMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
I+HIDMD F+ +V +R +PEL+D+P+AV
Sbjct: 37 IVHIDMDAFYAAVEMRDNPELKDKPIAV 64
Score = 82 (33.9 bits), Expect = 6.7e-17, Sum P(3) = 6.7e-17
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 1677 NTREYGLGNGMFVGHALKK-CPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTN 1735
+ R +G+ M G K+ CP L IVP +F+ Y+ VS + ++A N A+SL +
Sbjct: 76 HARRFGVRAAM-PGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSL--D 132
Query: 1736 ESFLNALPE-DIRQEVLDDLSR 1756
E++LN + RQ +D R
Sbjct: 133 EAYLNITKHLEERQNWPEDKRR 154
>UNIPROTKB|Q8A277 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:226186
"Bacteroides thetaiotaomicron VPI-5482" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 EMBL:AE015928 GenomeReviews:AE015928_GR
GO:GO:0009295 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK05644 HOGENOM:HOG000075154 HSSP:P06982
RefSeq:NP_812341.1 ProteinModelPortal:Q8A277 GeneID:1074051
KEGG:bth:BT_3429 PATRIC:21061865
BioCyc:BTHE226186:GJXV-3494-MONOMER Uniprot:Q8A277
Length = 653
Score = 213 (80.0 bits), Expect = 7.6e-17, Sum P(4) = 7.6e-17
Identities = 57/163 (34%), Positives = 84/163 (51%)
Query: 443 MTLQKGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVF 501
M +K +P KL D +D K+ C L L EGDSA A G R +
Sbjct: 404 MVQRKSPMSGGGLPGKLADCSD---KDPSKCELFLVEGDSAGGTAKQGRN---RMFQAIL 457
Query: 502 PLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVE-DMKTLRYGRLMIMTDQD 560
PLRGK+LNV +A + + LE+ EI N+ LG+ + + E +++ LRY +++IMTD D
Sbjct: 458 PLRGKILNVEKAMYHKALESDEIRNIYTALGVTIGTEDDSKEANIEKLRYHKIIIMTDAD 517
Query: 561 QDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREE 603
DGSHI LI+ F P +++ +L P+ K + E
Sbjct: 518 VDGSHIDTLIMTFFFRYMPQIIQNGYLYIATPPLYLCKKGKVE 560
Score = 102 (41.0 bits), Expect = 7.6e-17, Sum P(4) = 7.6e-17
Identities = 69/280 (24%), Positives = 125/280 (44%)
Query: 81 VPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
+ GL+ + EI+ N+ D + I++T+N++ N+I+V +NG+GIPV H+ EK
Sbjct: 40 IKGLHHLVYEIVDNSIDEALAG-YCDHIEVTINED-NSITVQDNGRGIPVDYHEKEKKSA 97
Query: 141 PTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGG--RNG--YGAK 196
+ L ++ KV+G + H + S N +T RNG Y +
Sbjct: 98 LEVAMTVLHAGGKFDKGSYKVSGGL------HGVGMSCVNALSTHMTTQVFRNGKIYQQE 151
Query: 197 LCNIFSSKFVV-ETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFK 255
I + V E S+ + +Q W D+ I + + D+ KI L +
Sbjct: 152 Y-EIGKPLYSVKEVGVSDITGTRQQFWPDDT-------IFTETVYDY-KI-LASRLRE-- 199
Query: 256 MTSLDKDM-VDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVK 314
+ L+ + + L RR + + +VF + E L + F +++ + R+ D +
Sbjct: 200 LAYLNAGLRISLTDRRVVNEEDGSFKSEVFYSEEGL--REFVRFIE--SSREHLINDVIY 255
Query: 315 IIYENVNPRWEVAIAPSDRGFQQV-SFVNSIATTKGGRHV 353
+ E E+AI + + V S+VN+I T +GG H+
Sbjct: 256 LNSEKQGIPIEIAIMYNTGFSENVHSYVNNINTIEGGTHL 295
Score = 43 (20.2 bits), Expect = 7.6e-17, Sum P(4) = 7.6e-17
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 20 SPKKKTPAN-KMSVEKIYQKKSQLEHILLRPDTYIGSV 56
S ++ TP N S + I Q LE + RP YIG +
Sbjct: 2 SEEQITPNNGSYSADSI-QVLEGLEAVRKRPAMYIGDI 38
Score = 37 (18.1 bits), Expect = 7.6e-17, Sum P(4) = 7.6e-17
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 861 WSLTMERKNELLKK 874
W TM+ N +LK+
Sbjct: 601 WETTMDPDNRMLKQ 614
>UNIPROTKB|Q3KMH2 [details] [associations]
symbol:gyrB_1 "DNA gyrase subunit B" species:315277
"Chlamydia trachomatis A/HAR-13" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 EMBL:CP000051
GenomeReviews:CP000051_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:YP_327998.1 ProteinModelPortal:Q3KMH2
STRING:Q3KMH2 GeneID:3687234 KEGG:cta:CTA_0208 PATRIC:32022282
BioCyc:CTRA315277:GI4C-250-MONOMER Uniprot:Q3KMH2
Length = 804
Score = 204 (76.9 bits), Expect = 7.9e-17, Sum P(4) = 7.9e-17
Identities = 52/163 (31%), Positives = 88/163 (53%)
Query: 443 MTLQKGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YG 499
+TL+K + S +P KL D + K+ C + + EGDSA G GRD+
Sbjct: 404 LTLRKSALDSARLPGKLIDCLE---KDPEKCEMYIVEGDSA-----GGSAKQGRDRRFQA 455
Query: 500 VFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQ 559
+ P+RGK+LNV +A +++ +N EI +++ LG K ++ LRY R++IMTD
Sbjct: 456 ILPIRGKILNVEKARLQKVFQNQEIGSIIAALGCGIGKDNF---NLSKLRYKRIIIMTDA 512
Query: 560 DQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKARE 602
D DGSHI+ L++ F + + L+ + P+ + +K ++
Sbjct: 513 DVDGSHIRTLLLTFFYRHMSALIENECVYIAQPPLYRVSKKKD 555
Score = 80 (33.2 bits), Expect = 7.9e-17, Sum P(4) = 7.9e-17
Identities = 45/200 (22%), Positives = 79/200 (39%)
Query: 173 LLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVET--SCSEYKKSFKQVWKDNMSKVT 230
L ++ + KV+GG +G G N S KF+ + Y F + +V
Sbjct: 106 LHAGGKFDKDSYKVSGGLHGVGVSCVNALSEKFIAKVFKDGQAYSMEFSRGAPLTTLQVL 165
Query: 231 SPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKL 290
P K G T++ F PD F D+ ++ +R + A + V + ++
Sbjct: 166 GPTDKRG-----TEVLFYPDPAIFSTCVFDRA---ILMKRLRELAFLNRGVTIVFEDDRD 217
Query: 291 P----VKNF-----QDYVKLYTDRQDEDGDPVKIIYENVNP------RWEVAIAPSDRGF 335
V F Q +V Y ++ E P I + P +E A+ + G+
Sbjct: 218 TGFDKVVFFYEGGIQSFVS-YLNQNKEILFPNPIYMQGSRPGDDGDIEFEAALQWNS-GY 275
Query: 336 QQV--SFVNSIATTKGGRHV 353
++ S+ N+I T +GG H+
Sbjct: 276 SELIYSYANNIPTRQGGTHL 295
Score = 71 (30.1 bits), Expect = 7.9e-17, Sum P(4) = 7.9e-17
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 79 TYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVN-QETNTISVWNNGKGIPVVEHKDE 136
T V GL+ + E++ N+ D C ++ V E IS+ +NG+GIP+ H+ E
Sbjct: 33 TGVTGLHHLVYEVVDNSIDEAMAG---FCTEVVVRILEDGGISISDNGRGIPIQIHEKE 88
Score = 46 (21.3 bits), Expect = 7.9e-17, Sum P(4) = 7.9e-17
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 411 MALKPFQVKNHIWIFINCLIVNPTFDSQTKENM 443
++L +K + ++ + NP F+ QTK+ +
Sbjct: 321 LSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKL 353
>UNIPROTKB|Q0BZW2 [details] [associations]
symbol:dinB "DNA polymerase IV" species:228405 "Hyphomonas
neptunium ATCC 15444" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005737 GO:GO:0000287 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 GO:GO:0006261 EMBL:CP000158 GenomeReviews:CP000158_GR
GO:GO:0003887 eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 RefSeq:YP_760981.1 ProteinModelPortal:Q0BZW2
STRING:Q0BZW2 GeneID:4289730 KEGG:hne:HNE_2286 PATRIC:32217415
OMA:PALCRDC ProtClustDB:PRK02794
BioCyc:HNEP228405:GI69-2308-MONOMER Uniprot:Q0BZW2
Length = 424
Score = 217 (81.4 bits), Expect = 8.6e-17, Sum P(2) = 8.6e-17
Identities = 64/219 (29%), Positives = 103/219 (47%)
Query: 1877 YQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKE 1936
Y+E +++ M H + +V VS DE Y+D S + P + L + + +E
Sbjct: 111 YREAAKAIRAEMDHL----TPLVQQVSIDEAYLDLSGTDRLHGAPPAASLARLAKNVERE 166
Query: 1937 TGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLN 1996
G T S G SNK A+ A++ KP G + P+ F+ P+ L GVG LN
Sbjct: 167 VGVTVSVGLSSNKFLAKTASELDKPRGFAIIAPEEAEAFLAPHPVGFLHGVGPKFAESLN 226
Query: 1997 SLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIR 2056
G T D+Q LK L G + G L + G D++++ RKSVS+E +
Sbjct: 227 KDGFYTIEDIQKADLKSLIRRYG-ETGDWLKRCAHGRDNRKVNPHEDRKSVSSETTF--- 282
Query: 2057 FQNNQE---METFLKQLAGEVEKRLEEVKMKGKCITLKL 2092
F++ + +E L +L+ + R + + G+ +TLKL
Sbjct: 283 FEDTADIGILEDHLWRLSVKTADRAKAEGVSGRVVTLKL 321
Score = 76 (31.8 bits), Expect = 8.6e-17, Sum P(2) = 8.6e-17
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 1616 IMHIDMDCFFVSVGIRHHPELQDEPVAVAHGK 1647
I H+D D F+ SV R +P L+D+P+ V G+
Sbjct: 38 IAHVDCDAFYASVEKRDNPTLKDKPLIVGGGQ 69
>MGI|MGI:1349767 [details] [associations]
symbol:Polk "polymerase (DNA directed), kappa" species:10090
"Mus musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IMP] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=ISO] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0008152 "metabolic process"
evidence=TAS] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
SMART:SM00734 MGI:MGI:1349767 GO:GO:0005634 GO:GO:0046872
GO:GO:0003684 GO:GO:0006260 GO:GO:0006281 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
CleanEx:MM_POLK PDB:4FJO PDBsum:4FJO GeneTree:ENSGT00530000062942
HOGENOM:HOG000082711 KO:K03511 CTD:51426 HOVERGEN:HBG101212
OMA:TCTELYQ OrthoDB:EOG4Z8XVV EMBL:AB027563 EMBL:AF163571
EMBL:AB040765 EMBL:BC052820 IPI:IPI00131620 IPI:IPI00462547
RefSeq:NP_036178.1 UniGene:Mm.89926 PDB:2LSJ PDBsum:2LSJ
ProteinModelPortal:Q9QUG2 SMR:Q9QUG2 IntAct:Q9QUG2 STRING:Q9QUG2
PhosphoSite:Q9QUG2 PRIDE:Q9QUG2 Ensembl:ENSMUST00000022172
GeneID:27015 KEGG:mmu:27015 UCSC:uc007rne.1 InParanoid:Q9QUG2
NextBio:304949 Bgee:Q9QUG2 Genevestigator:Q9QUG2
GermOnline:ENSMUSG00000021668 Uniprot:Q9QUG2
Length = 852
Score = 176 (67.0 bits), Expect = 9.6e-17, Sum P(4) = 9.6e-17
Identities = 47/179 (26%), Positives = 88/179 (49%)
Query: 1929 LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQ--IISDFMLNIPLSDLPG 1986
+R I ++T T S G N + A++ + K KPNGQ+ + P + DF+ ++P+ + G
Sbjct: 296 IRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFIKDLPIRKVSG 355
Query: 1987 VGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCR-GEDDKELTFEHQRK 2045
+G L +LG TC +L + L + + ++ + H G +L + +RK
Sbjct: 356 IGKVTEKMLMALGIVTCTELYQ--QRALLSLLFSETSWHYFLHIALGLGSTDLARDGERK 413
Query: 2046 SVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREAS 2104
S+S E + +E + ++L E+ L++ +KG+ +T+KL + E AS
Sbjct: 414 SMSVERTFS-EISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNFEVKTRAS 471
Score = 103 (41.3 bits), Expect = 9.6e-17, Sum P(4) = 9.6e-17
Identities = 35/112 (31%), Positives = 62/112 (55%)
Query: 1540 NEDFLG-EFYNKSRLHHL---STMGSMFKQYVNELREKHDGVFRGIEAIRKWK---TSLG 1592
N++ G E +K +++ + +T GS F Y NEL+ K V + IE + + K TS
Sbjct: 21 NDNKAGMEGLDKEKINKIIMEATKGSRF--YGNELK-KEKQVNQRIENMMQQKAQITSQQ 77
Query: 1593 ITEDEDLEETFSDNPSPSEP-EPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
+ + + + F+ + I+H+DMD F+ +V +R +PEL+D+P+AV
Sbjct: 78 LRKAQLQVDKFAMELERNRNLNNTIVHVDMDAFYAAVEMRDNPELKDKPIAV 129
Score = 82 (33.9 bits), Expect = 9.6e-17, Sum P(4) = 9.6e-17
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 1677 NTREYGLGNGMFVGHALKK-CPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTN 1735
+ R +G+ M G K+ CP L IVP +F+ Y+ VS + ++A N A+SL +
Sbjct: 141 HARRFGVRAAM-PGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSL--D 197
Query: 1736 ESFLNALPE-DIRQEVLDDLSR 1756
E++LN RQ+ +D R
Sbjct: 198 EAYLNITQHLQERQDWPEDKRR 219
Score = 43 (20.2 bits), Expect = 7.7e-13, Sum P(4) = 7.7e-13
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 1901 AVSCDEMYVDCSQLLQE 1917
A+S DE Y++ +Q LQE
Sbjct: 193 AMSLDEAYLNITQHLQE 209
Score = 43 (20.2 bits), Expect = 9.4e-11, Sum P(4) = 9.4e-11
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 808 FHDNELAKPQKTGPQLERQERQAAE 832
F+ NEL K ++ ++E +Q A+
Sbjct: 48 FYGNELKKEKQVNQRIENMMQQKAQ 72
Score = 43 (20.2 bits), Expect = 9.4e-11, Sum P(4) = 9.4e-11
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1657 VDRQAEFDIYRQRTMNRMGLNTREYGL 1683
+D E D ++ + RMGLN + G+
Sbjct: 1 MDNTKEKDNFKDDLLLRMGLNDNKAGM 27
Score = 42 (19.8 bits), Expect = 9.6e-17, Sum P(4) = 9.6e-17
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 2196 GIQVSKLEHQSKTLATIDTFFTNKGKP--PDQLNNPRP-GPSNSTITPGPSNSTLPP 2249
G+ ++ E +S A +DT N+ K PD + P N TI+ ++ P
Sbjct: 695 GVDLTGTEDRSLKAARMDTLENNRSKEECPDIPDKSCPISLENETISTLSRQDSVQP 751
>UNIPROTKB|G3V8W7 [details] [associations]
symbol:Polk "Protein Polk" species:10116 "Rattus
norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR006642
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00734 RGD:620058
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 EMBL:CH473955
Gene3D:3.30.1490.100 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
OMA:TCTELYQ UniGene:Rn.92419 Ensembl:ENSRNOT00000033952
Uniprot:G3V8W7
Length = 851
Score = 174 (66.3 bits), Expect = 1.6e-16, Sum P(3) = 1.6e-16
Identities = 47/179 (26%), Positives = 88/179 (49%)
Query: 1929 LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQ--IISDFMLNIPLSDLPG 1986
+R I ++T T S G N + A++ + K KPNGQ+ + P + DF+ ++P+ + G
Sbjct: 296 IRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQIVPSRSAVMDFIKDLPIRKVSG 355
Query: 1987 VGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCR-GEDDKELTFEHQRK 2045
+G L +LG TC +L + L + + +++ + H G +L + +RK
Sbjct: 356 IGKVTEKMLLALGIVTCTELYQ--QRALLSLLFSESSWHYFLHVALGLGSTDLARDGERK 413
Query: 2046 SVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREAS 2104
S+S E + +E + ++L E+ L++ +KG+ +T+KL E AS
Sbjct: 414 SMSVERTFS-EINKTEEQYSLCQELCTELAHDLQKEGLKGRTVTIKLKNVDFEVKTRAS 471
Score = 99 (39.9 bits), Expect = 1.6e-16, Sum P(3) = 1.6e-16
Identities = 34/112 (30%), Positives = 62/112 (55%)
Query: 1540 NEDFLG-EFYNKSRLHHL---STMGSMFKQYVNELREKHDGVFRGIEAIRKWK---TSLG 1592
N++ G E +K +++ + +T GS F Y NEL+ K V + IE + + K TS
Sbjct: 21 NDNKAGMEGLDKEKINKIIMEATKGSRF--YGNELK-KEKQVNQRIENMMQQKAQITSQQ 77
Query: 1593 ITEDEDLEETFSDNPSPSEP-EPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
+ + + + F+ + I+H+DMD F+ +V +R +PEL+++P+AV
Sbjct: 78 LRKAQLQVDRFAMELERNRNLNNTIVHVDMDAFYAAVEMRDNPELKEKPIAV 129
Score = 81 (33.6 bits), Expect = 1.6e-16, Sum P(3) = 1.6e-16
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 1677 NTREYGLGNGMFVGHALKK-CPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTN 1735
+ R +G+ M G K+ CP L IVP +F+ Y+ VS + ++A N A+SL +
Sbjct: 141 HARRFGVRAAM-PGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSL--D 197
Query: 1736 ESFLN 1740
E++LN
Sbjct: 198 EAYLN 202
Score = 43 (20.2 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 1901 AVSCDEMYVDCSQLLQE 1917
A+S DE Y++ +Q LQE
Sbjct: 193 AMSLDEAYLNITQHLQE 209
Score = 43 (20.2 bits), Expect = 8.0e-11, Sum P(3) = 8.0e-11
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 808 FHDNELAKPQKTGPQLERQERQAAE 832
F+ NEL K ++ ++E +Q A+
Sbjct: 48 FYGNELKKEKQVNQRIENMMQQKAQ 72
Score = 39 (18.8 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 1657 VDRQAEFDIYRQRTMNRMGLNTREYGL 1683
+D E + ++ + RMGLN + G+
Sbjct: 1 MDNTKEKNNFKDALLLRMGLNDNKAGM 27
>UNIPROTKB|Q59192 [details] [associations]
symbol:parE "DNA topoisomerase 4 subunit B" species:224308
"Bacillus subtilis subsp. subtilis str. 168" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR005740 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 EMBL:AL009126 GenomeReviews:AL009126_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 HOGENOM:HOG000075154 EMBL:Z73234
EMBL:AF024713 PIR:C69637 RefSeq:NP_389691.2
ProteinModelPortal:Q59192 SMR:Q59192
EnsemblBacteria:EBBACT00000000468 GeneID:936151 KEGG:bsu:BSU18090
PATRIC:18975449 GenoList:BSU18090 KO:K02622 OMA:TDGTGLH
ProtClustDB:PRK05559 BioCyc:BSUB:BSU18090-MONOMER BindingDB:Q59192
ChEMBL:CHEMBL3485 HAMAP:MF_00939 TIGRFAMs:TIGR01058 Uniprot:Q59192
Length = 655
Score = 179 (68.1 bits), Expect = 1.7e-16, Sum P(4) = 1.7e-16
Identities = 48/154 (31%), Positives = 81/154 (52%)
Query: 464 AGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPLRGKLLNVREATHKQILEN 521
AG++N L L EGDSA G GRD+ V PLRGK++N +A I +N
Sbjct: 415 AGSRNPAKNELYLVEGDSA-----GGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKN 469
Query: 522 AEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTL 581
EIN ++ +G ++ ++D + Y +++IMTD D DG+HI+ L++ F + L
Sbjct: 470 EEINTIIHAIGGGVGADFS-IDD---INYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPL 525
Query: 582 LRLPFLEEFITPIIKATKA--REELSFYSLPEFE 613
+ + + P+ K +K ++E+ Y+ + E
Sbjct: 526 IEHGKVFIALPPLYKVSKGSGKKEIIEYAWSDEE 559
Score = 114 (45.2 bits), Expect = 1.7e-16, Sum P(4) = 1.7e-16
Identities = 46/195 (23%), Positives = 87/195 (44%)
Query: 166 PTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDN 225
P +I L + K +GG +G GA + N S V + ++Q +++
Sbjct: 93 PEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLTVTIERDGFV--YQQRFENG 150
Query: 226 MSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFL 285
VTS E +K T F PD T F T+ + + ++ R ++A K +K+ L
Sbjct: 151 GKPVTSLEKIGKTKKTGTLTHFKPDPTMFSTTTYN---FETLSERLRESAFLLKGLKIEL 207
Query: 286 NGEKLPVKN---FQDYVKLYTDRQDEDGDPVK--IIYENVNPRWEVAIA-PSDRGFQQ-- 337
E+ + +++ ++ + +E+ D + + +E + EV A + G+ +
Sbjct: 208 IDERNDQREVFYYENGIEAFVAYLNEEKDVLSEVVSFEGEHHSIEVDFAFQFNDGYSENI 267
Query: 338 VSFVNSIATTKGGRH 352
+SFVN++ T GG H
Sbjct: 268 LSFVNNVRTKDGGTH 282
Score = 61 (26.5 bits), Expect = 1.7e-16, Sum P(4) = 1.7e-16
Identities = 22/81 (27%), Positives = 39/81 (48%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GL+ + EI+ N+ D + I + ++++ N+ISV + G+G+P HK K P
Sbjct: 38 GLHHLVYEIVDNSVDEVLAGHGDHII-VKIHKD-NSISVQDRGRGMPTGMHKLGKP-TPE 94
Query: 143 MIFGHLLTSSNYNDEEDKVTG 163
+I L + K +G
Sbjct: 95 VILTVLHAGGKFGQGGYKTSG 115
Score = 40 (19.1 bits), Expect = 1.7e-16, Sum P(4) = 1.7e-16
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 33 EKIYQKKSQLEHILLRPDTYIGSVE 57
E Q LE + RP YIGS +
Sbjct: 11 EDAIQVLEGLEAVRKRPGMYIGSTD 35
>TIGR_CMR|CHY_1651 [details] [associations]
symbol:CHY_1651 "DNA polymerase IV - AMBIGUITY"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005737
GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 GO:GO:0003887 eggNOG:COG0389 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 HOGENOM:HOG000082710 RefSeq:YP_360472.1
HSSP:P96022 ProteinModelPortal:Q3ABL2 STRING:Q3ABL2 GeneID:3726655
KEGG:chy:CHY_1651 PATRIC:21276423 OMA:GNREIFQ
ProtClustDB:CLSK2464724 BioCyc:CHYD246194:GJCN-1650-MONOMER
Uniprot:Q3ABL2
Length = 391
Score = 171 (65.3 bits), Expect = 2.2e-16, Sum P(3) = 2.2e-16
Identities = 51/175 (29%), Positives = 87/175 (49%)
Query: 1898 IVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATK 1957
+V VS DE Y+D + Q+L + +++ I +ET T S G NK A+LA++
Sbjct: 98 LVEPVSLDEAYLDVTGS-QKLFGPGAEIGKKIKKRIFEETELTASVGVAPNKFLAKLASE 156
Query: 1958 KAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNE 2017
KP+G + + DF+ +P+ L GVG + +LN +G +T D + L+ +
Sbjct: 157 VNKPDGFCEVREDNVLDFLAPLPVEMLWGVGEKMKERLNDMGIKTVQDFWELPEFFLRKK 216
Query: 2018 VGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAG 2072
G G LY RG D +E+ E KS+ E+ +++ +++ L +L G
Sbjct: 217 FGVL-GQNLYYLSRGIDFREVIPERVPKSLGKEITLQ---KDSSDVDYLLGKLLG 267
Score = 86 (35.3 bits), Expect = 2.2e-16, Sum P(3) = 2.2e-16
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 1615 VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKV 1653
VI+H+DMD FF +V R +PEL+ +PV V G V
Sbjct: 5 VIIHVDMDAFFAAVEQRDNPELKGKPVIVGGVPGERGVV 43
Score = 79 (32.9 bits), Expect = 2.2e-16, Sum P(3) = 2.2e-16
Identities = 18/62 (29%), Positives = 37/62 (59%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESF 1738
R++G+ + M + A + CP+ +P + + Y+EVS ++ + T +E VSL +E++
Sbjct: 51 RKFGVRSAMSLWEAARLCPHGIFIPGNHKKYQEVSEKIFRIFREYTPLVEPVSL--DEAY 108
Query: 1739 LN 1740
L+
Sbjct: 109 LD 110
>UNIPROTKB|Q8TQG0 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:188937
"Methanosarcina acetivorans C2A" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 EMBL:AE010299
GenomeReviews:AE010299_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK05644
RefSeq:NP_616517.1 HSSP:P06982 ProteinModelPortal:Q8TQG0
GeneID:1473472 KEGG:mac:MA1584 BioCyc:MACE188937:GI2O-1646-MONOMER
Uniprot:Q8TQG0
Length = 634
Score = 189 (71.6 bits), Expect = 4.3e-16, Sum P(5) = 4.3e-16
Identities = 52/179 (29%), Positives = 94/179 (52%)
Query: 443 MTLQKGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YG 499
+T +K + + +P KL D ++ K+ C + + EG+SA G GRD+
Sbjct: 392 LTRRKSALEVSTLPGKLADCSE---KDPSVCEIYIVEGNSA-----GGSAKQGRDRGFQA 443
Query: 500 VFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQ 559
+ PLRGK+LNV ++ +IL+N E+ +L+ LG S+ + +++ RY ++++MTD
Sbjct: 444 ILPLRGKILNVEKSRLAKILKNNEVVSLITALGTGVSEDFA----LESARYHKVILMTDA 499
Query: 560 DQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEE 618
D DG+HI+ L++ L+ ++ P+ + K + E +S E E K+E
Sbjct: 500 DVDGAHIRTLLLTLFFRYMRPLIDAGYVYIAQPPLYRIKKGKSEYYIHSDRELEVKKKE 558
Score = 91 (37.1 bits), Expect = 4.3e-16, Sum P(5) = 4.3e-16
Identities = 43/181 (23%), Positives = 82/181 (45%)
Query: 185 KVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKD-DFT 243
KV+GG +G G + N S VE + KK F++ + K + ++G+ + T
Sbjct: 111 KVSGGLHGVGVSVVNALSEWLNVEVE-RDGKKYFQRYIR---GKPEAEVQETGTSEITGT 166
Query: 244 KITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKL-- 301
K TF PD F+ T D+++ R + A + + + L + P + ++
Sbjct: 167 KTTFKPDARIFETTDFQ---YDILSNRLRELAFLNRGLTINLKDLRSPEGQAETFIYSGG 223
Query: 302 ---YTDRQDEDGDPV--KIIY---ENVNPRWEVAIAPSDRGFQQV-SFVNSIATTKGGRH 352
+ + ++ P+ K IY + + E+A+ ++ + V SF N+I T +GG H
Sbjct: 224 IVEFVEYLNKKKQPLHEKPIYFERQRDDMVVEIAMQYTNSYTENVYSFANNINTHEGGTH 283
Query: 353 V 353
+
Sbjct: 284 I 284
Score = 72 (30.4 bits), Expect = 4.3e-16, Sum P(5) = 4.3e-16
Identities = 19/81 (23%), Positives = 39/81 (48%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GL+ + E++ N+ D + +T+N + +++V +NG+GIP+ H K
Sbjct: 36 GLHHLVYEVVDNSIDEALAG-FCTRVDVTINPD-GSVTVLDNGRGIPIDPHPVHKKSALE 93
Query: 143 MIFGHLLTSSNYNDEEDKVTG 163
++ L ++ KV+G
Sbjct: 94 VVMTVLHAGGKFDKNTYKVSG 114
Score = 40 (19.1 bits), Expect = 4.3e-16, Sum P(5) = 4.3e-16
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 42 LEHILLRPDTYIGSVE 57
LE + RP YIGS +
Sbjct: 18 LEAVRKRPSMYIGSTD 33
Score = 38 (18.4 bits), Expect = 4.3e-16, Sum P(5) = 4.3e-16
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 418 VKNHIWIFINCLIVNPTFDSQTKENM 443
V+ + I+ ++ P F+ QTK +
Sbjct: 316 VREGLTAIISVKLMEPQFEGQTKTRL 341
>ZFIN|ZDB-GENE-060421-4949 [details] [associations]
symbol:polh "polymerase (DNA directed), eta"
species:7955 "Danio rerio" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 ZFIN:ZDB-GENE-060421-4949 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100 SUPFAM:SSF100879
InterPro:IPR017061 PIRSF:PIRSF036603 GeneTree:ENSGT00530000062942
EMBL:AL929536 IPI:IPI00758987 Ensembl:ENSDART00000139589
OMA:MKSLEKH ArrayExpress:F1Q7Z9 Bgee:F1Q7Z9 Uniprot:F1Q7Z9
Length = 749
Score = 189 (71.6 bits), Expect = 6.5e-16, Sum P(4) = 6.5e-16
Identities = 53/181 (29%), Positives = 87/181 (48%)
Query: 1929 LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVG 1988
+R + + TG CS G NK+ A+LA KPN Q L + +P+S + +G
Sbjct: 199 MRAAVEEHTGFRCSAGISHNKVLAKLACGLNKPNRQTVLPLSSVPQLFSTLPISKIRNLG 258
Query: 1989 HSLLFKLN-SLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSV 2047
L + +L + GDL S +L+ G+K G LY CRG + + + KS+
Sbjct: 259 GKLGSSITETLSVENMGDLTRFSRAQLEQHFGDKTGPWLYDLCRGIEFEPVKPRQLPKSI 318
Query: 2048 SAEVNYGIR--FQNNQEMETFLKQLAGEVEKRLEEVK-MKGKCIT-LKLMVRSAEAPREA 2103
N+ + + Q+++ +L QLA E+E+RL + + + G+ L + VR A R
Sbjct: 319 GCSKNFAGKTCLRTKQQVQYWLHQLALELEERLNKDRDVNGRVARQLTVGVRQAGGQRSG 378
Query: 2104 S 2104
S
Sbjct: 379 S 379
Score = 83 (34.3 bits), Expect = 6.5e-16, Sum P(4) = 6.5e-16
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 1613 EPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGK 1647
E V+ +DMDCF+V V R PEL+++P VA K
Sbjct: 6 ERVVALVDMDCFYVQVEQRLKPELKNKPCVVAQYK 40
Score = 78 (32.5 bits), Expect = 6.5e-16, Sum P(4) = 6.5e-16
Identities = 25/108 (23%), Positives = 55/108 (50%)
Query: 1661 AEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKI--VPY-----DFEGYKEVS 1713
A++ ++ + + R +G+G MF A K CP+L++ VP D Y+E S
Sbjct: 37 AQYKTWKGGGIIAVSYEARAHGVGRNMFADDARKLCPDLQVARVPEAHGKADLTHYREAS 96
Query: 1714 YCLYNLIASLTLNIEAVSLYTNESFLN---ALPEDIRQEVLDDLSRQQ 1758
+ +++ + IE S+ +E++++ ++ E ++ + D++ QQ
Sbjct: 97 VEVIEVMSRFAV-IERASI--DEAYMDLTASVQERLKNTSVQDITAQQ 141
Score = 52 (23.4 bits), Expect = 2.6e-13, Sum P(4) = 2.6e-13
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 1847 EERHLNPIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDE 1906
+ R L P + + R H GK + T + EA E++ + S ++ S DE
Sbjct: 67 DARKLCPDLQVARVPEAH-GKADLTHYREASVEVIEVM---------SRFAVIERASIDE 116
Query: 1907 MYVDCSQLLQE-LSLTPLQ--FASYLRET 1932
Y+D + +QE L T +Q A L+ T
Sbjct: 117 AYMDLTASVQERLKNTSVQDITAQQLKNT 145
Score = 44 (20.5 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 1634 PELQDEPVAVAHGKGNSSKVRE 1655
P+LQ V AHGK + + RE
Sbjct: 73 PDLQVARVPEAHGKADLTHYRE 94
Score = 41 (19.5 bits), Expect = 6.5e-16, Sum P(4) = 6.5e-16
Identities = 20/73 (27%), Positives = 31/73 (42%)
Query: 2165 PMYISQASQILK-EVLFIVNKLKVDPVELRGIGIQVSKLEHQSKTLATIDTFFTNKGKPP 2223
P IS + Q+ E I N L V +R G + + ++ A I +FF K
Sbjct: 567 PAGISTSLQMKSLEKHQIQNSLCVGDQSVRAPGENPPREQTSDESPAGISSFFQMKSLEK 626
Query: 2224 DQL-NNPRPGPSN 2235
++ N+P G N
Sbjct: 627 HRIQNSPCTGDPN 639
Score = 37 (18.1 bits), Expect = 1.6e-15, Sum P(4) = 1.6e-15
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 2203 EHQSKTLATIDTFFTNKGKPPDQLNNPR-PGPSNSTITPG 2241
+ Q + +I FF K ++ N PG ST G
Sbjct: 476 QRQRENTTSISAFFQRKSLEKQEIQNSLCPG-DQSTSASG 514
>TIGR_CMR|BA_3657 [details] [associations]
symbol:BA_3657 "DNA topoisomerase IV, B subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009340 "DNA topoisomerase IV
complex" evidence=ISS] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR005740 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
HOGENOM:HOG000075154 KO:K02622 OMA:TDGTGLH ProtClustDB:PRK05559
TIGRFAMs:TIGR01058 HSSP:P06982 RefSeq:NP_845922.1
RefSeq:YP_020292.2 RefSeq:YP_029649.1 ProteinModelPortal:Q81Y98
IntAct:Q81Y98 DNASU:1085976 EnsemblBacteria:EBBACT00000013021
EnsemblBacteria:EBBACT00000015630 EnsemblBacteria:EBBACT00000022573
GeneID:1085976 GeneID:2818281 GeneID:2850873 KEGG:ban:BA_3657
KEGG:bar:GBAA_3657 KEGG:bat:BAS3392
BioCyc:BANT260799:GJAJ-3454-MONOMER
BioCyc:BANT261594:GJ7F-3563-MONOMER Uniprot:Q81Y98
Length = 654
Score = 173 (66.0 bits), Expect = 7.1e-16, Sum P(3) = 7.1e-16
Identities = 46/140 (32%), Positives = 73/140 (52%)
Query: 464 AGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPLRGKLLNVREATHKQILEN 521
A ++N L L EGDSA G GRD+ V PLRGK++N +A I +N
Sbjct: 414 AQSRNPQKNELYLVEGDSA-----GGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKN 468
Query: 522 AEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTL 581
EIN ++ +G ++ VED + Y +++IMTD D DG+HI+ L++ F + L
Sbjct: 469 EEINTIIYAIGGGVGNEFD-VED---INYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPL 524
Query: 582 LRLPFLEEFITPIIKATKAR 601
+ + + P+ K +K +
Sbjct: 525 IEAGKVFIALPPLYKVSKGK 544
Score = 130 (50.8 bits), Expect = 7.1e-16, Sum P(3) = 7.1e-16
Identities = 57/237 (24%), Positives = 105/237 (44%)
Query: 125 GKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEED 184
G I VV HKD + V G + + + K+ P +I L +
Sbjct: 58 GDEISVVIHKDNSISVIDK--GRGMPTGMH-----KLGKPTPEVILTVLHAGGKFGQGGY 110
Query: 185 KVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTK 244
K +GG +G GA + N S VV + ++Q +++ VT+ E +K+ T
Sbjct: 111 KTSGGLHGVGASVVNALSEWLVV--TIKRDGNIYEQRFENGGVPVTTLEKIGKTKESGTT 168
Query: 245 ITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDY---VKL 301
+ F PD T F T+ + + + R ++A K +K+ + E+ +++ Y ++
Sbjct: 169 MHFKPDTTIFSTTNYN---YETLCERLRESAFLLKGMKISIKDERNDLEDVFHYETGIEA 225
Query: 302 YTDRQDEDGDPVK-IIY---ENVNPRWEVAIAPSDRGFQQ--VSFVNSIATTKGGRH 352
+ +E+ D + ++Y E E+A +D G+ + +SFVN++ T GG H
Sbjct: 226 FVSYLNEEKDSIHPVVYFTGEQNGIEAELAFQFND-GYSENILSFVNNVRTKDGGTH 281
Score = 60 (26.2 bits), Expect = 8.9e-09, Sum P(3) = 8.9e-09
Identities = 22/81 (27%), Positives = 38/81 (46%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GL+ + EI+ N+ D I + ++++ N+ISV + G+G+P HK K P
Sbjct: 37 GLHHLVYEIVDNSVDEALAGFGDE-ISVVIHKD-NSISVIDKGRGMPTGMHKLGKP-TPE 93
Query: 143 MIFGHLLTSSNYNDEEDKVTG 163
+I L + K +G
Sbjct: 94 VILTVLHAGGKFGQGGYKTSG 114
Score = 40 (19.1 bits), Expect = 7.1e-16, Sum P(3) = 7.1e-16
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 33 EKIYQKKSQLEHILLRPDTYIGSVE 57
E Q LE + RP YIGS +
Sbjct: 10 EDAIQVLEGLEAVRKRPGMYIGSTD 34
>UNIPROTKB|Q9UBT6 [details] [associations]
symbol:POLK "DNA polymerase kappa" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IMP]
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 GO:GO:0005634 GO:GO:0046872
GO:GO:0003684 GO:GO:0006260 EMBL:CH471084 EMBL:AB036934
GO:GO:0003887 GO:GO:0006297 eggNOG:COG0389 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 KO:K03511
EMBL:AB027564 EMBL:AF163570 EMBL:AF194973 EMBL:AF315602
EMBL:AF318313 EMBL:AK091659 EMBL:AK314610 EMBL:AY273797
EMBL:BC014955 EMBL:BC050718 EMBL:AB036935 IPI:IPI00033151
IPI:IPI00218100 IPI:IPI00552440 IPI:IPI00552703 RefSeq:NP_057302.1
UniGene:Hs.732105 PDB:1T94 PDB:2OH2 PDB:2W7O PDB:2W7P PDB:3IN5
PDB:3PZP PDBsum:1T94 PDBsum:2OH2 PDBsum:2W7O PDBsum:2W7P
PDBsum:3IN5 PDBsum:3PZP ProteinModelPortal:Q9UBT6 SMR:Q9UBT6
IntAct:Q9UBT6 STRING:Q9UBT6 PhosphoSite:Q9UBT6 DMDM:59798438
PaxDb:Q9UBT6 PRIDE:Q9UBT6 Ensembl:ENST00000241436
Ensembl:ENST00000352007 Ensembl:ENST00000508526
Ensembl:ENST00000510815 Ensembl:ENST00000515295 GeneID:51426
KEGG:hsa:51426 UCSC:uc003kdw.3 UCSC:uc003keb.3 UCSC:uc010izq.3
CTD:51426 GeneCards:GC05P074843 HGNC:HGNC:9183 MIM:605650
neXtProt:NX_Q9UBT6 PharmGKB:PA33503 HOVERGEN:HBG101212
InParanoid:Q9UBT6 OMA:TCTELYQ OrthoDB:EOG4Z8XVV BindingDB:Q9UBT6
ChEMBL:CHEMBL5365 EvolutionaryTrace:Q9UBT6 GenomeRNAi:51426
NextBio:54977 ArrayExpress:Q9UBT6 Bgee:Q9UBT6 Genevestigator:Q9UBT6
Uniprot:Q9UBT6
Length = 870
Score = 189 (71.6 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
Identities = 49/179 (27%), Positives = 91/179 (50%)
Query: 1929 LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTP--QIISDFMLNIPLSDLPG 1986
+R I ++T T S G N + A++ + K KPNGQ+ + P Q + DF+ ++P+ + G
Sbjct: 297 IRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSG 356
Query: 1987 VGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCR-GEDDKELTFEHQRK 2045
+G L +LG TC +L + L + + ++ + H G LT + +RK
Sbjct: 357 IGKVTEKMLKALGIITCTELYQ--QRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERK 414
Query: 2046 SVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREAS 2104
S+S E + +E + ++L E+ + L++ ++KG+ +T+KL + E AS
Sbjct: 415 SMSVERTFS-EINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVNFEVKTRAS 472
Score = 108 (43.1 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
Identities = 37/112 (33%), Positives = 62/112 (55%)
Query: 1540 NEDFLG-EFYNKSRLHHL---STMGSMFKQYVNELREKHDGVFRGIEAIRKWK---TSLG 1592
N++ G E +K +++ + +T GS F Y NEL+ K V + IE + + K TS
Sbjct: 22 NDNKAGMEGLDKEKINKIIMEATKGSRF--YGNELK-KEKQVNQRIENMMQQKAQITSQQ 78
Query: 1593 ITEDEDLEETFSDNPSPSEP-EPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
+ + + + F+ S I+HIDMD F+ +V +R +PEL+D+P+AV
Sbjct: 79 LRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAV 130
Score = 83 (34.3 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 69/334 (20%), Positives = 132/334 (39%)
Query: 1677 NTREYGLGNGMFVGHALKK-CPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTN 1735
+ R +G+ M G K+ CP L IVP +F+ Y+ VS + ++A N A+SL +
Sbjct: 142 HARRFGVRAAM-PGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSL--D 198
Query: 1736 ESFLNALPE-DIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPSPSPILD 1794
E++LN + RQ +D R + P +++ H R+ SP + +
Sbjct: 199 EAYLNITKHLEERQNWPEDKRRYFIKMGSSVENDNP-GKEVNKLSEHE--RSISPL-LFE 254
Query: 1795 MSTSILDTTTSHILSSNVSLQEMRTMLREWMC---ESQPEPSDIEMFSEYLSNLVEERHL 1851
S S + N Q +L+ + +Q +I E + L +
Sbjct: 255 ESPSDVQPPGDPF-QVNFEEQNNPQILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGI 313
Query: 1852 NPIVILLRFLR-RHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVD 1910
P +L + ++ + + Q ++ ++ K S K+ + +
Sbjct: 314 APNTMLAKVCSDKNKPNGQYQILPNR-QAVMDFIKDLPIRKVSGIGKVTEKMLKALGIIT 372
Query: 1911 CSQLLQELSLTPLQFAS----YLRETIAKETGCTCSTGFGSNKLQA--RLATKKAKPNGQ 1964
C++L Q+ +L L F+ Y I+ G T T G K + R ++ K Q
Sbjct: 373 CTELYQQRALLSLLFSETSWHYFLH-ISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQ 431
Query: 1965 FHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSL 1998
+ L ++ S+ ++ L G ++ KL ++
Sbjct: 432 YSLCQELCSELAQDLQKERLKG--RTVTIKLKNV 463
Score = 43 (20.2 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 808 FHDNELAKPQKTGPQLERQERQAAE 832
F+ NEL K ++ ++E +Q A+
Sbjct: 49 FYGNELKKEKQVNQRIENMMQQKAQ 73
Score = 41 (19.5 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 1664 DIYRQRTMNRMGLNTREYGL 1683
D Y+ + RMGLN + G+
Sbjct: 9 DSYKDDLLLRMGLNDNKAGM 28
>UNIPROTKB|F1NCT7 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
EMBL:AADN02067159 EMBL:AADN02067160 EMBL:AADN02067161
IPI:IPI00680100 Ensembl:ENSGALT00000032848 ArrayExpress:F1NCT7
Uniprot:F1NCT7
Length = 543
Score = 191 (72.3 bits), Expect = 8.7e-16, Sum P(2) = 8.7e-16
Identities = 53/183 (28%), Positives = 92/183 (50%)
Query: 1929 LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTP--QIISDFMLNIPLSDLPG 1986
+R I ++T T S G N + A++ + + KPNGQ ++P Q + DF+ ++P+ +PG
Sbjct: 291 IRFRIEQKTQLTASAGIAPNTMLAKMCSDRNKPNGQCRISPERQAVLDFIKDLPIRKVPG 350
Query: 1987 VGHSLLFKLNSLGAQTCGDL--QNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQR 2044
+G L +LG TC +L Q L L +E ++ L + G L + +R
Sbjct: 351 IGKVTEKMLKALGIVTCSELYQQRALLSLLFSEASWRSFLDI---SLGLGSTHLEKDGER 407
Query: 2045 KSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREAS 2104
KS+S E + ++ + ++L E+ + L++ +KGK +TLKL + E AS
Sbjct: 408 KSMSTERTFS-EISKAEDQYSLCQELCRELAQDLQKEGLKGKTVTLKLKNVNFEVKTRAS 466
Query: 2105 KFL 2107
L
Sbjct: 467 TVL 469
Score = 108 (43.1 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 71/329 (21%), Positives = 140/329 (42%)
Query: 1677 NTREYGLGNGMFVGHALKK-CPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTN 1735
+ R +G+ M G KK CP+L IVP +FE Y++VS + ++A + + L +
Sbjct: 142 HARRFGVRAAM-PGFIAKKLCPHLTIVPLNFEKYRKVSKEVKEILAEYDPHFMPMGL--D 198
Query: 1736 ESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTP-SPSP-IL 1793
E++LN + E + + + +++ L+ E NTTE + ++ + + S SP +
Sbjct: 199 EAYLN-VTEHLEERLNWPEDKRRYFLNTE-NTTEKIYLQFTEYETKVMPKYGYSSSPELF 256
Query: 1794 DMSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLNP 1853
+ TS++D S Q ++ ++ + ++ +I E + L + P
Sbjct: 257 EDGTSVMDD------DSGQRDQSLKNVV-VFGTSAEEAVKEIRFRIEQKTQLTASAGIAP 309
Query: 1854 IVILLRFLR-RHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCS 1912
+L + R+ + + E Q +L ++ K K+ + V CS
Sbjct: 310 NTMLAKMCSDRNKPNGQCRISPER-QAVLDFIKDLPIRKVPGIGKVTEKMLKALGIVTCS 368
Query: 1913 QLLQELSLTPLQFA-----SYLRETIAKETGCTCSTGFGSNKLQA--RLATKKAKPNGQF 1965
+L Q+ +L L F+ S+L I+ G T G K + R ++ +K Q+
Sbjct: 369 ELYQQRALLSLLFSEASWRSFL--DISLGLGSTHLEKDGERKSMSTERTFSEISKAEDQY 426
Query: 1966 HLTPQIISDFMLNIPLSDLPGVGHSLLFK 1994
L ++ + ++ L G +L K
Sbjct: 427 SLCQELCRELAQDLQKEGLKGKTVTLKLK 455
Score = 99 (39.9 bits), Expect = 8.7e-16, Sum P(2) = 8.7e-16
Identities = 32/93 (34%), Positives = 51/93 (54%)
Query: 1557 STMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEP-- 1614
++ GS F Y NEL+ K V + IE + + K IT+ + L+ + E E
Sbjct: 43 ASKGSKF--YENELK-KDQQVNQRIEKMMQLKEK--ITQQQLLKAQLQVDKLVLELERSR 97
Query: 1615 ----VIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
I+HIDMD F+ +V +R +PEL+++P+AV
Sbjct: 98 NLSCTIVHIDMDAFYAAVEMRDNPELKEKPIAV 130
Score = 43 (20.2 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 808 FHDNELAKPQKTGPQLER 825
F++NEL K Q+ ++E+
Sbjct: 49 FYENELKKDQQVNQRIEK 66
>UNIPROTKB|Q8FA30 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:189518
"Leptospira interrogans serovar Lai str. 56601" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK05644 EMBL:AE010300
GenomeReviews:AE010300_GR HSSP:P06982 RefSeq:NP_710186.1
ProteinModelPortal:Q8FA30 GeneID:1149348 KEGG:lil:LA_0005
PATRIC:22380849 BioCyc:LINT189518:GJBB-5-MONOMER Uniprot:Q8FA30
Length = 639
Score = 183 (69.5 bits), Expect = 9.1e-16, Sum P(3) = 9.1e-16
Identities = 58/193 (30%), Positives = 90/193 (46%)
Query: 424 IFINCLIVNPTFDSQTK-ENMTLQKGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDS 481
I C++ ++ K ++T +K +P KL D ++ K+ L L EGDS
Sbjct: 376 ILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLADCSE---KDPAHSELYLVEGDS 432
Query: 482 AKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTT 541
A A G R+ + PL+GK+LNV +A +IL + EI LV LG +
Sbjct: 433 AGGSAKQGRD---RNTQAILPLKGKILNVEKARLDKILSSEEIRVLVSALGTGIGEDEFN 489
Query: 542 VEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAR 601
++ +RY ++MIMTD D DGSHI+ L++ F ++ +L P+ +
Sbjct: 490 IDK---IRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIERGYLYVAQPPLYLIKHGK 546
Query: 602 EELSFYSLPEFEE 614
YS E EE
Sbjct: 547 NSTYVYSDKEKEE 559
Score = 110 (43.8 bits), Expect = 9.1e-16, Sum P(3) = 9.1e-16
Identities = 48/209 (22%), Positives = 97/209 (46%)
Query: 158 EDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKS 217
+ K++ + M H + ++ KV+GG +G G + N S VE + K
Sbjct: 87 DKKISTIEVVMTILH--AGGKFENDAYKVSGGLHGVGVSVVNALSEYLEVEVH--QKGKV 142
Query: 218 FKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAS 277
+ Q ++ + V+S +I+ S + T + F PD T F T++D D+++ R + A
Sbjct: 143 YTQKYEKGVP-VSSVQIQGDSSERGTIVRFKPDATIF--TTVDFQF-DVLSARFRELAFL 198
Query: 278 TKDVKVFLN----GEKLPVKN---FQDYVKLYTDRQDEDGDPV-KIIYENVNPR---WEV 326
K + + + G++ ++N F + + + +E+ P+ K+I+ N E+
Sbjct: 199 NKGLVLVVEDHRRGKENILRNEFQFSGGIVSFVEHINENKHPMHKVIHFERNKDDVLAEI 258
Query: 327 AIAPSDRGFQQV-SFVNSIATTKGGRHVD 354
+I S+ + + F N+I GG H++
Sbjct: 259 SIQYSETYTENIFCFTNNINNNLGGTHLE 287
Score = 92 (37.4 bits), Expect = 6.2e-14, Sum P(3) = 6.2e-14
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNC--IKITVNQETNTISVWNNGKGIPVVEHKDEKMFV 140
GL+K+ E++ N+ D +C IKI++ + N + V +NG+GIPV H D+K+
Sbjct: 37 GLHKMVYEVVDNSVDEAMAG---HCTEIKISILPD-NIVEVKDNGRGIPVDIHPDKKIST 92
Query: 141 PTMIFGHLLTSSNYNDEEDKVTG 163
++ L + ++ KV+G
Sbjct: 93 IEVVMTILHAGGKFENDAYKVSG 115
Score = 48 (22.0 bits), Expect = 9.1e-16, Sum P(3) = 9.1e-16
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 418 VKNHIWIFINCLIVNPTFDSQTKENM 443
VK + I+ I P F+SQTKE +
Sbjct: 320 VKEGLTAVISIKIPQPQFNSQTKEKL 345
>UNIPROTKB|F1S2I2 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 GO:GO:0005634 GO:GO:0003684
GO:GO:0003887 GO:GO:0006297 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
KO:K03511 CTD:51426 OMA:TCTELYQ EMBL:CU466449 RefSeq:XP_003123756.1
Ensembl:ENSSSCT00000015383 GeneID:100518650 KEGG:ssc:100518650
Uniprot:F1S2I2
Length = 878
Score = 186 (70.5 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 51/182 (28%), Positives = 90/182 (49%)
Query: 1929 LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTP--QIISDFMLNIPLSDLPG 1986
+R I ++T T S G N + A++ + K KPNGQ+ + P Q++ DF+ ++P+ + G
Sbjct: 304 IRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQVVMDFIKDLPIRKVSG 363
Query: 1987 VGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCR-GEDDKELTFEHQRK 2045
+G L +LG TC DL + L + + ++ + H G L + +RK
Sbjct: 364 IGKVTEKMLKALGIITCTDLYQ--QRALLSLLFSETSWHYFLHISLGLGSTCLPRDGERK 421
Query: 2046 SVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASK 2105
S+S E + +E + ++L E+ + L++ +KG+ +TLKL E AS
Sbjct: 422 SMSVERTFS-EINKAEEQYSLCQELCSELAQDLQKEGLKGRTVTLKLKNVDFEVKTRAST 480
Query: 2106 FL 2107
L
Sbjct: 481 VL 482
Score = 109 (43.4 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 39/113 (34%), Positives = 63/113 (55%)
Query: 1540 NEDFLG-EFYNKSRLHHL---STMGSMFKQYVNEL-REKHDGVFRGIEAIRKWK---TSL 1591
N++ G E +K +++ + +T GS F Y NEL REK V + IE + + K TS
Sbjct: 29 NDNKAGMEGLDKEKINKIIMEATKGSRF--YGNELKREKQ--VNQRIENMMQQKAQITSQ 84
Query: 1592 GITEDEDLEETFSDNPSPSEP-EPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
+ + + + F+ S I+HIDMD F+ +V +R +PEL+D+P+AV
Sbjct: 85 QLRKAQLQVDRFAMELEQSRDLSNTIVHIDMDAFYAAVEMRDNPELRDKPIAV 137
Score = 88 (36.0 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 67/332 (20%), Positives = 128/332 (38%)
Query: 1677 NTREYGLGNGMFVGHALKK-CPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTN 1735
+ R++G+ G G K+ CP L IVP +F+ Y+ VS + + A N A+SL +
Sbjct: 149 HARKFGV-RGAMPGFIAKRLCPQLIIVPPNFDKYRAVSSEVKEIFADYDPNFMALSL--D 205
Query: 1736 ESFLNALPE-DIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPSPSPILD 1794
E++LN + RQ +D R+ + + + +++ H R+ SP D
Sbjct: 206 EAYLNITKHLEERQNWPED-KRKYFIKTGNSLENDKPGKEVNKLSEHE--RSISPLLFED 262
Query: 1795 MSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEP-SDIEMFSEYLSNLVEERHLNP 1853
+ S ++ T S E +I E + L + P
Sbjct: 263 SPPDLKSPGNSFQVNFEEPNNPQMTQNSVVFGTSAEEVVKEIRFRIEQKTTLTASAGIAP 322
Query: 1854 IVILLRFLR-RHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCS 1912
+L + ++ + + Q ++ ++ K S K+ + + C+
Sbjct: 323 NTMLAKVCSDKNKPNGQYQILPNR-QVVMDFIKDLPIRKVSGIGKVTEKMLKALGIITCT 381
Query: 1913 QLLQELSLTPLQFAS----YLRETIAKETGCTCSTGFGSNKLQA--RLATKKAKPNGQFH 1966
L Q+ +L L F+ Y I+ G TC G K + R ++ K Q+
Sbjct: 382 DLYQQRALLSLLFSETSWHYFLH-ISLGLGSTCLPRDGERKSMSVERTFSEINKAEEQYS 440
Query: 1967 LTPQIISDFMLNIPLSDLPGVGHSLLFKLNSL 1998
L ++ S+ ++ L G ++ KL ++
Sbjct: 441 LCQELCSELAQDLQKEGLKG--RTVTLKLKNV 470
Score = 45 (20.9 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 172 HLLTSSNYNDEEDKVTGGRNGYGAK-LC 198
++L++SNY+ + V G G+ AK LC
Sbjct: 141 NMLSTSNYHARKFGVRGAMPGFIAKRLC 168
Score = 40 (19.1 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 1664 DIYRQRTMNRMGLNTREYGL 1683
D Y+ + RMGLN + G+
Sbjct: 16 DNYKDDLLFRMGLNDNKAGM 35
Score = 40 (19.1 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 147 HLLTSSNYNDEEDKVTGVVPTMI 169
++L++SNY+ + V G +P I
Sbjct: 141 NMLSTSNYHARKFGVRGAMPGFI 163
Score = 40 (19.1 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 808 FHDNELAKPQKTGPQLERQERQAAE 832
F+ NEL + ++ ++E +Q A+
Sbjct: 56 FYGNELKREKQVNQRIENMMQQKAQ 80
>POMBASE|SPCC553.07c [details] [associations]
symbol:kpa1 "DinB translesion DNA repair polymerase, pol
kappa" species:4896 "Schizosaccharomyces pombe" [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISM]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=ISM]
[GO:0006974 "response to DNA damage stimulus" evidence=IMP]
[GO:0019985 "translesion synthesis" evidence=TAS] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 PomBase:SPCC553.07c
GO:GO:0005829 GO:GO:0007126 GO:GO:0000077 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0000790 GO:GO:0003887 GO:GO:0019985 eggNOG:COG0389
Gene3D:3.30.1490.100 SUPFAM:SSF100879 HSSP:Q9UHC5 KO:K03511
PIR:T41397 RefSeq:NP_587767.2 ProteinModelPortal:O74944
STRING:O74944 EnsemblFungi:SPCC553.07c.1 GeneID:2539547
KEGG:spo:SPCC553.07c OMA:VHVDCDA OrthoDB:EOG441TMM NextBio:20800707
Uniprot:O74944
Length = 547
Score = 193 (73.0 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
Identities = 75/259 (28%), Positives = 123/259 (47%)
Query: 1895 ESKIVSAVSCDEMYVDC-SQL-LQELSLTP---LQFASYLRETIAKETGCTCSTGFGSNK 1949
+S + A S DE Y++ S L LQEL+ T +R+ + +ETG T S G +NK
Sbjct: 217 DSNLCPA-SIDEFYMNLTSHLRLQELAFTVENITMVVEKIRKQVHEETGVTVSCGIAANK 275
Query: 1950 LQARLATKKAKPNGQFHLT-PQI-ISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQ 2007
L A++A+ K KPN QF + +I IS FM ++P+ ++ G+G L +L L +TCGD+Q
Sbjct: 276 LLAKIASNKRKPNNQFFIPFDEIGISKFMNDLPVREVSGIGRVLEQQLLGLEIKTCGDIQ 335
Query: 2008 NISLKRLQNEVGNKNGLTLYKHCRGEDDKELTF--EHQRKSVSAEVNYGIRFQNNQEMET 2065
+L L K+ L + G L E +RK++ +E + + +E
Sbjct: 336 R-NLVILSYIFLPKSFQNLLRCSYGFGTTILDEYGESKRKTIGSEATFSSNLSSPSIIEY 394
Query: 2066 FLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLG---HGVCDYITKSSSLP 2122
L+ L V + L++ + I +K + + K +G H D + + L
Sbjct: 395 KLRLLVQNVSENLQKRGLVTNSIAIKYKTSEFQVHTK-QKSIGQFIHSESDLLKPALQLL 453
Query: 2123 IYERPLIITYFLLLVRSAE 2141
P+ I LL VR+ +
Sbjct: 454 RQSYPMTIR--LLGVRATK 470
Score = 76 (31.8 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 1572 EKHDGVFRGIEAI-RKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGI 1630
EK+ R +A R+W E ++ T D + + +I+H+D D F+ S+
Sbjct: 92 EKYQSKLRFDKAFQREWTI-----RQESVDTTVEDFRAKRDLTQIIVHVDCDAFYASIEE 146
Query: 1631 RHHPELQDEPVAV 1643
+P+L+ P+AV
Sbjct: 147 LKNPKLKSLPMAV 159
Score = 66 (28.3 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESF 1738
R++G+ + M A K CP+L ++P + Y S + N++A N+ S+ +E +
Sbjct: 172 RKFGVRSAMPEFIARKICPDLVVIPLNLSEYAIKSKEIQNVLAQYDSNLCPASI--DEFY 229
Query: 1739 LNALPEDIR-QEV 1750
+N L +R QE+
Sbjct: 230 MN-LTSHLRLQEL 241
Score = 37 (18.1 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 214 YKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKF 254
+ K+F++ W V + +K D T+I D F
Sbjct: 100 FDKAFQREWTIRQESVDTTVEDFRAKRDLTQIIVHVDCDAF 140
>UNIPROTKB|Q9KVX3 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
EMBL:AE003852 GenomeReviews:AE003852_GR Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009330 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF
ProtClustDB:PRK14939 PIR:H82376 RefSeq:NP_062599.1
ProteinModelPortal:Q9KVX3 SMR:Q9KVX3 PRIDE:Q9KVX3 DNASU:2615137
GeneID:2615137 KEGG:vch:VC0015 PATRIC:20079078 Uniprot:Q9KVX3
Length = 805
Score = 199 (75.1 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 52/162 (32%), Positives = 81/162 (50%)
Query: 443 MTLQKGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVF 501
MT +KG+ +P KL D + K+ L + EGDSA A G R +
Sbjct: 392 MTRRKGALDLAGLPGKLADCQE---KDPALSELYIVEGDSAGGSAKQGRN---RKNQAIL 445
Query: 502 PLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQ 561
PL+GK+LNV +A ++L + E+ L+ LG + + LRY ++IMTD D
Sbjct: 446 PLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDK---LRYHNIIIMTDADV 502
Query: 562 DGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREE 603
DGSHI+ L++ F + P L+ ++ P+ K K ++E
Sbjct: 503 DGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGKQE 544
Score = 93 (37.8 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 22/81 (27%), Positives = 45/81 (55%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GL+ + E++ N+ D + + +T++++ N++SV ++G+GIP H +EK+
Sbjct: 35 GLHHMVFEVVDNSIDEALAGYCKDIV-VTIHED-NSVSVSDDGRGIPTEMHPEEKVSAAE 92
Query: 143 MIFGHLLTSSNYNDEEDKVTG 163
+I L ++D KV+G
Sbjct: 93 VIMTVLHAGGKFDDNSYKVSG 113
Score = 93 (37.8 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 50/240 (20%), Positives = 99/240 (41%)
Query: 126 KGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDK 185
K I V H+D + V G + + + +E+ V+ T++ H ++D K
Sbjct: 57 KDIVVTIHEDNSVSVSDD--GRGIPTEMHPEEKVSAAEVIMTVL--H--AGGKFDDNSYK 110
Query: 186 VTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKI 245
V+GG +G G + N S K ++ + K Q + + + + + T +
Sbjct: 111 VSGGLHGVGVSVVNALSEKVLL--TIYRGGKIHSQTYHHGVPQAPLAVVGETERTG-TTV 167
Query: 246 TFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKN----FQDYVKL 301
F P F T+++ D++ +R + + V + L E+ K ++ ++
Sbjct: 168 RFWPSAQTF--TNIEFHY-DILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQA 224
Query: 302 YTDRQDEDGDPV--KIIYENVNPR----WEVAIAPSDRGFQQ--VSFVNSIATTKGGRHV 353
+ + + P+ K+ + N EVA+ +D GFQ+ F N+I GG H+
Sbjct: 225 FVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWND-GFQENIYCFTNNIPQRDGGTHL 283
>TIGR_CMR|VC_0015 [details] [associations]
symbol:VC_0015 "DNA gyrase, subunit B" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009330
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187
KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 PROSITE:PS50880
OMA:IFETTEF ProtClustDB:PRK14939 PIR:H82376 RefSeq:NP_062599.1
ProteinModelPortal:Q9KVX3 SMR:Q9KVX3 PRIDE:Q9KVX3 DNASU:2615137
GeneID:2615137 KEGG:vch:VC0015 PATRIC:20079078 Uniprot:Q9KVX3
Length = 805
Score = 199 (75.1 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 52/162 (32%), Positives = 81/162 (50%)
Query: 443 MTLQKGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVF 501
MT +KG+ +P KL D + K+ L + EGDSA A G R +
Sbjct: 392 MTRRKGALDLAGLPGKLADCQE---KDPALSELYIVEGDSAGGSAKQGRN---RKNQAIL 445
Query: 502 PLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQ 561
PL+GK+LNV +A ++L + E+ L+ LG + + LRY ++IMTD D
Sbjct: 446 PLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDK---LRYHNIIIMTDADV 502
Query: 562 DGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREE 603
DGSHI+ L++ F + P L+ ++ P+ K K ++E
Sbjct: 503 DGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGKQE 544
Score = 93 (37.8 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 22/81 (27%), Positives = 45/81 (55%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GL+ + E++ N+ D + + +T++++ N++SV ++G+GIP H +EK+
Sbjct: 35 GLHHMVFEVVDNSIDEALAGYCKDIV-VTIHED-NSVSVSDDGRGIPTEMHPEEKVSAAE 92
Query: 143 MIFGHLLTSSNYNDEEDKVTG 163
+I L ++D KV+G
Sbjct: 93 VIMTVLHAGGKFDDNSYKVSG 113
Score = 93 (37.8 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 50/240 (20%), Positives = 99/240 (41%)
Query: 126 KGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDK 185
K I V H+D + V G + + + +E+ V+ T++ H ++D K
Sbjct: 57 KDIVVTIHEDNSVSVSDD--GRGIPTEMHPEEKVSAAEVIMTVL--H--AGGKFDDNSYK 110
Query: 186 VTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKI 245
V+GG +G G + N S K ++ + K Q + + + + + T +
Sbjct: 111 VSGGLHGVGVSVVNALSEKVLL--TIYRGGKIHSQTYHHGVPQAPLAVVGETERTG-TTV 167
Query: 246 TFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKN----FQDYVKL 301
F P F T+++ D++ +R + + V + L E+ K ++ ++
Sbjct: 168 RFWPSAQTF--TNIEFHY-DILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQA 224
Query: 302 YTDRQDEDGDPV--KIIYENVNPR----WEVAIAPSDRGFQQ--VSFVNSIATTKGGRHV 353
+ + + P+ K+ + N EVA+ +D GFQ+ F N+I GG H+
Sbjct: 225 FVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWND-GFQENIYCFTNNIPQRDGGTHL 283
>TIGR_CMR|SPO_0155 [details] [associations]
symbol:SPO_0155 "DNA gyrase, B subunit" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:YP_165427.1 ProteinModelPortal:Q5LWU8
SMR:Q5LWU8 GeneID:3194940 KEGG:sil:SPO0155 PATRIC:23373557
Uniprot:Q5LWU8
Length = 805
Score = 200 (75.5 bits), Expect = 2.1e-15, Sum P(5) = 2.1e-15
Identities = 52/150 (34%), Positives = 78/150 (52%)
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPLRGKLLNVREAT 514
KL+D ++ K+ + L EGDSA G GRD+ V PLRGK+LNV A
Sbjct: 414 KLKDCSE---KDPSKTEVFLVEGDSA-----GGSAQTGRDRRTQAVLPLRGKILNVERAR 465
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
++L + EI NLV LG + + LRY +++IMTD D DG+HI+ L++ F
Sbjct: 466 FDRMLGSQEIGNLVMALGTGIGRDEFNISK---LRYHKIVIMTDADVDGAHIRTLLLTFF 522
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREEL 604
+ P L+ +L P+ K + + E+
Sbjct: 523 YRQMPELIEGGYLYIAQPPLYKVARGKSEV 552
Score = 77 (32.2 bits), Expect = 2.1e-15, Sum P(5) = 2.1e-15
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GL+ + E++ N D + + + ++ +++ +SV +NG+GIPV H +E +
Sbjct: 41 GLHHMVYEVVDNGIDEALAG-HADHVTVKIHADSS-VSVADNGRGIPVDIHAEEGVSAAE 98
Query: 143 MIFGHLLTSSNYNDEEDKVTG 163
+I L ++ KV+G
Sbjct: 99 VIMTQLHAGGKFDSNSYKVSG 119
Score = 72 (30.4 bits), Expect = 2.1e-15, Sum P(5) = 2.1e-15
Identities = 45/200 (22%), Positives = 83/200 (41%)
Query: 168 MIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSS--KFVVETSCSEYKKSFKQVWKDN 225
+I L ++ KV+GG +G G + N S + + E+ F++
Sbjct: 99 VIMTQLHAGGKFDSNSYKVSGGLHGVGVSVVNALSDWLELRIWRHGKEHVARFERGDTVE 158
Query: 226 MSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFL 285
+V + G + T++ F T F ++LD + + + +R + A V++ L
Sbjct: 159 HLRVVG---ECGDRTG-TEVRFLASTTTF--SNLDY-VFETLEKRLRELAFLNSGVRIIL 211
Query: 286 ----NGEKLPVKNF-----QDYVKLYTDRQDEDGDPVKIIY--ENVNPRWEVAIAPSDRG 334
E++ + F +++VK Y DR P I + E + E+A+ +D
Sbjct: 212 IDERPAERIETELFYEGGVREFVK-YLDRSKSPVMPAPIYFKGERDDIGVEIAMWWNDSY 270
Query: 335 FQQV-SFVNSIATTKGGRHV 353
+ V F N+I GG HV
Sbjct: 271 HETVLPFTNNIPQRDGGTHV 290
Score = 44 (20.5 bits), Expect = 2.1e-15, Sum P(5) = 2.1e-15
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 26 PANKMSVEKIYQKKSQLEHILLRPDTYIGSVE 57
P N+ + I K LE + RP YIG +
Sbjct: 7 PGNEYGADSIKVLKG-LEAVRKRPGMYIGDTD 37
Score = 37 (18.1 bits), Expect = 2.1e-15, Sum P(5) = 2.1e-15
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 430 IVNPTFDSQTKENM 443
+ +P F SQTK+ +
Sbjct: 335 VPDPKFSSQTKDKL 348
>UNIPROTKB|D6R9M8 [details] [associations]
symbol:POLK "DNA polymerase kappa" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 EMBL:AC010245 EMBL:AC116341 GO:GO:0003887
InterPro:IPR024728 Pfam:PF11798 HOGENOM:HOG000082711 HGNC:HGNC:9183
EMBL:AC026424 IPI:IPI00967979 ProteinModelPortal:D6R9M8 SMR:D6R9M8
Ensembl:ENST00000514141 UCSC:uc003kea.3 ArrayExpress:D6R9M8
Bgee:D6R9M8 Uniprot:D6R9M8
Length = 427
Score = 141 (54.7 bits), Expect = 2.4e-15, Sum P(3) = 2.4e-15
Identities = 37/125 (29%), Positives = 64/125 (51%)
Query: 1929 LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTP--QIISDFMLNIPLSDLPG 1986
+R I ++T T S G N + A++ + K KPNGQ+ + P Q + DF+ ++P+ + G
Sbjct: 297 IRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSG 356
Query: 1987 VGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCR-GEDDKELTFEHQRK 2045
+G L +LG TC +L + L + + ++ + H G LT + +RK
Sbjct: 357 IGKVTEKMLKALGIITCTELYQ--QRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERK 414
Query: 2046 SVSAE 2050
S+S E
Sbjct: 415 SMSVE 419
Score = 108 (43.1 bits), Expect = 2.4e-15, Sum P(3) = 2.4e-15
Identities = 37/112 (33%), Positives = 62/112 (55%)
Query: 1540 NEDFLG-EFYNKSRLHHL---STMGSMFKQYVNELREKHDGVFRGIEAIRKWK---TSLG 1592
N++ G E +K +++ + +T GS F Y NEL+ K V + IE + + K TS
Sbjct: 22 NDNKAGMEGLDKEKINKIIMEATKGSRF--YGNELK-KEKQVNQRIENMMQQKAQITSQQ 78
Query: 1593 ITEDEDLEETFSDNPSPSEP-EPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
+ + + + F+ S I+HIDMD F+ +V +R +PEL+D+P+AV
Sbjct: 79 LRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAV 130
Score = 82 (33.9 bits), Expect = 2.4e-15, Sum P(3) = 2.4e-15
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 1677 NTREYGLGNGMFVGHALKK-CPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTN 1735
+ R +G+ M G K+ CP L IVP +F+ Y+ VS + ++A N A+SL +
Sbjct: 142 HARRFGVRAAM-PGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSL--D 198
Query: 1736 ESFLNALPE-DIRQEVLDDLSR 1756
E++LN + RQ +D R
Sbjct: 199 EAYLNITKHLEERQNWPEDKRR 220
Score = 43 (20.2 bits), Expect = 9.3e-09, Sum P(3) = 9.3e-09
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 808 FHDNELAKPQKTGPQLERQERQAAE 832
F+ NEL K ++ ++E +Q A+
Sbjct: 49 FYGNELKKEKQVNQRIENMMQQKAQ 73
Score = 41 (19.5 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 1664 DIYRQRTMNRMGLNTREYGL 1683
D Y+ + RMGLN + G+
Sbjct: 9 DSYKDDLLLRMGLNDNKAGM 28
>UNIPROTKB|Q3ZAI3 [details] [associations]
symbol:dinB "DNA polymerase IV" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0003887 eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 HSSP:P96022 RefSeq:YP_180766.1
ProteinModelPortal:Q3ZAI3 STRING:Q3ZAI3 GeneID:3229123
KEGG:det:DET0011 PATRIC:21607125 OMA:PDGITIL ProtClustDB:CLSK836830
BioCyc:DETH243164:GJNF-11-MONOMER Uniprot:Q3ZAI3
Length = 390
Score = 187 (70.9 bits), Expect = 3.7e-15, Sum P(3) = 3.7e-15
Identities = 68/268 (25%), Positives = 122/268 (45%)
Query: 1893 SSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQA 1952
S S + + DE Y++ + + L + + A +R I E S G ++K+ A
Sbjct: 93 SDFSPFLEPMGLDEAYLEVTGF-ESLHGSIGEMALKIRRRITAELSINASIGIANSKVVA 151
Query: 1953 RLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLK 2012
++AT++AKPNGQ + + F+ + +S +PG+G + L SLG T G L I
Sbjct: 152 KIATERAKPNGQCEVPAGEEAAFLAPLDISIMPGIGKKTEYHLKSLGINTLGRLAGIPAT 211
Query: 2013 RLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAG 2072
L+ +G L G D++ + + KS+S E F+ + TFL+ G
Sbjct: 212 FLKIHLGTYAPYLL-NAAAGIDNRPVEMPAEAKSISRETT----FETDTRNHTFLEAKLG 266
Query: 2073 EV-EKRLEEVKMKGK-CITLKLMVRSAE-APREASKFLGHGVCDYITKSSSLPIYERPLI 2129
+ EK ++ +GK +++ +R A+ K L H C S + I++ L
Sbjct: 267 YLSEKIAATLRKRGKQARVVQIKIRFADFTTLTRQKHLNHP-C-----SGNQEIFQTALK 320
Query: 2130 ITYFLLLVRSAEAPREASKFLGHGVCDY 2157
+ +L ++ R + + LG G+ D+
Sbjct: 321 LMNGIL-----DSDRRSVRLLGVGISDF 343
Score = 84 (34.6 bits), Expect = 3.7e-15, Sum P(3) = 3.7e-15
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 1616 IMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFD 1664
+MH+D+D FFVSV PEL+ +PV V GK R GV A ++
Sbjct: 6 VMHVDLDAFFVSVEQSLRPELKSKPVIVG-GKPE----RRGVVAAASYE 49
Score = 51 (23.0 bits), Expect = 3.7e-15, Sum P(3) = 3.7e-15
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESF 1738
R++G+ +GM + A CP + + Y+E S +++ + +E + L +E++
Sbjct: 51 RKFGIHSGMPLLSAKHLCPQAVFIEGNHRLYREYSEKFMQILSDFSPFLEPMGL--DEAY 108
Query: 1739 L 1739
L
Sbjct: 109 L 109
>TIGR_CMR|DET_0011 [details] [associations]
symbol:DET_0011 "DNA polymerase IV, putative"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005737
GO:GO:0046872 GO:GO:0003684 GO:GO:0006260 GO:GO:0006281
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0003887
eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 HSSP:P96022
RefSeq:YP_180766.1 ProteinModelPortal:Q3ZAI3 STRING:Q3ZAI3
GeneID:3229123 KEGG:det:DET0011 PATRIC:21607125 OMA:PDGITIL
ProtClustDB:CLSK836830 BioCyc:DETH243164:GJNF-11-MONOMER
Uniprot:Q3ZAI3
Length = 390
Score = 187 (70.9 bits), Expect = 3.7e-15, Sum P(3) = 3.7e-15
Identities = 68/268 (25%), Positives = 122/268 (45%)
Query: 1893 SSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQA 1952
S S + + DE Y++ + + L + + A +R I E S G ++K+ A
Sbjct: 93 SDFSPFLEPMGLDEAYLEVTGF-ESLHGSIGEMALKIRRRITAELSINASIGIANSKVVA 151
Query: 1953 RLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLK 2012
++AT++AKPNGQ + + F+ + +S +PG+G + L SLG T G L I
Sbjct: 152 KIATERAKPNGQCEVPAGEEAAFLAPLDISIMPGIGKKTEYHLKSLGINTLGRLAGIPAT 211
Query: 2013 RLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAG 2072
L+ +G L G D++ + + KS+S E F+ + TFL+ G
Sbjct: 212 FLKIHLGTYAPYLL-NAAAGIDNRPVEMPAEAKSISRETT----FETDTRNHTFLEAKLG 266
Query: 2073 EV-EKRLEEVKMKGK-CITLKLMVRSAE-APREASKFLGHGVCDYITKSSSLPIYERPLI 2129
+ EK ++ +GK +++ +R A+ K L H C S + I++ L
Sbjct: 267 YLSEKIAATLRKRGKQARVVQIKIRFADFTTLTRQKHLNHP-C-----SGNQEIFQTALK 320
Query: 2130 ITYFLLLVRSAEAPREASKFLGHGVCDY 2157
+ +L ++ R + + LG G+ D+
Sbjct: 321 LMNGIL-----DSDRRSVRLLGVGISDF 343
Score = 84 (34.6 bits), Expect = 3.7e-15, Sum P(3) = 3.7e-15
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 1616 IMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFD 1664
+MH+D+D FFVSV PEL+ +PV V GK R GV A ++
Sbjct: 6 VMHVDLDAFFVSVEQSLRPELKSKPVIVG-GKPE----RRGVVAAASYE 49
Score = 51 (23.0 bits), Expect = 3.7e-15, Sum P(3) = 3.7e-15
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESF 1738
R++G+ +GM + A CP + + Y+E S +++ + +E + L +E++
Sbjct: 51 RKFGIHSGMPLLSAKHLCPQAVFIEGNHRLYREYSEKFMQILSDFSPFLEPMGL--DEAY 108
Query: 1739 L 1739
L
Sbjct: 109 L 109
>UNIPROTKB|F1NCT8 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
SMART:SM00734 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 GeneTree:ENSGT00530000062942 EMBL:AADN02067159
EMBL:AADN02067160 EMBL:AADN02067161 IPI:IPI00680917
Ensembl:ENSGALT00000032847 ArrayExpress:F1NCT8 Uniprot:F1NCT8
Length = 862
Score = 191 (72.3 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
Identities = 53/183 (28%), Positives = 92/183 (50%)
Query: 1929 LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTP--QIISDFMLNIPLSDLPG 1986
+R I ++T T S G N + A++ + + KPNGQ ++P Q + DF+ ++P+ +PG
Sbjct: 286 IRFRIEQKTQLTASAGIAPNTMLAKMCSDRNKPNGQCRISPERQAVLDFIKDLPIRKVPG 345
Query: 1987 VGHSLLFKLNSLGAQTCGDL--QNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQR 2044
+G L +LG TC +L Q L L +E ++ L + G L + +R
Sbjct: 346 IGKVTEKMLKALGIVTCSELYQQRALLSLLFSEASWRSFLDI---SLGLGSTHLEKDGER 402
Query: 2045 KSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREAS 2104
KS+S E + ++ + ++L E+ + L++ +KGK +TLKL + E AS
Sbjct: 403 KSMSTERTFS-EISKAEDQYSLCQELCRELAQDLQKEGLKGKTVTLKLKNVNFEVKTRAS 461
Query: 2105 KFL 2107
L
Sbjct: 462 TVL 464
Score = 103 (41.3 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 71/327 (21%), Positives = 137/327 (41%)
Query: 1677 NTREYGLGNGMFVGHALKK-CPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTN 1735
+ R +G+ M G KK CP+L IVP +FE Y++VS + ++A + + L +
Sbjct: 142 HARRFGVRAAM-PGFIAKKLCPHLTIVPLNFEKYRKVSKEVKEILAEYDPHFMPMGL--D 198
Query: 1736 ESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPSPSPILDM 1795
E++LN + E + + + +++ L+ E NTTE + I+ S S + +
Sbjct: 199 EAYLN-VTEHLEERLNWPEDKRRYFLNTE-NTTE---KRIVKKRSQVNDGYSSSPELFED 253
Query: 1796 STSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLNPIV 1855
TS++D S Q ++ ++ + ++ +I E + L + P
Sbjct: 254 GTSVMDD------DSGQRDQSLKNVV-VFGTSAEEAVKEIRFRIEQKTQLTASAGIAPNT 306
Query: 1856 ILLRFLR-RHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQL 1914
+L + R+ + + E Q +L ++ K K+ + V CS+L
Sbjct: 307 MLAKMCSDRNKPNGQCRISPER-QAVLDFIKDLPIRKVPGIGKVTEKMLKALGIVTCSEL 365
Query: 1915 LQELSLTPLQFA-----SYLRETIAKETGCTCSTGFGSNKLQA--RLATKKAKPNGQFHL 1967
Q+ +L L F+ S+L I+ G T G K + R ++ +K Q+ L
Sbjct: 366 YQQRALLSLLFSEASWRSFL--DISLGLGSTHLEKDGERKSMSTERTFSEISKAEDQYSL 423
Query: 1968 TPQIISDFMLNIPLSDLPGVGHSLLFK 1994
++ + ++ L G +L K
Sbjct: 424 CQELCRELAQDLQKEGLKGKTVTLKLK 450
Score = 99 (39.9 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
Identities = 32/93 (34%), Positives = 51/93 (54%)
Query: 1557 STMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEP-- 1614
++ GS F Y NEL+ K V + IE + + K IT+ + L+ + E E
Sbjct: 43 ASKGSKF--YENELK-KDQQVNQRIEKMMQLKEK--ITQQQLLKAQLQVDKLVLELERSR 97
Query: 1615 ----VIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
I+HIDMD F+ +V +R +PEL+++P+AV
Sbjct: 98 NLSCTIVHIDMDAFYAAVEMRDNPELKEKPIAV 130
Score = 45 (20.9 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 26/128 (20%), Positives = 49/128 (38%)
Query: 2004 GDLQNISLKRLQNEVGNKNGLTLYKHCRGE--DDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
G L +++ +N++ +N HC+ E DD + Q + N
Sbjct: 637 GSLVEDTVEISKNDLSRENTFNFLSHCKNENIDDCKENVTDQLAGTGQSASTSENSSGNS 696
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITL--KLMVRSAEAPREASK--FLGHGVCDYITK 2117
+ F Q+ E R E K G I + ++ +P+ S+ + G D+ +
Sbjct: 697 RDKKFT-QIVSEKPHR--E-KQPGDLIDIPRNASIKQCLSPKRNSQENAVQFGRMDHTEE 752
Query: 2118 SSSLPIYE 2125
+SS +E
Sbjct: 753 TSSSCSFE 760
Score = 43 (20.2 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 808 FHDNELAKPQKTGPQLER 825
F++NEL K Q+ ++E+
Sbjct: 49 FYENELKKDQQVNQRIEK 66
>UNIPROTKB|Q8AWW1 [details] [associations]
symbol:DINB1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0019985 "translesion synthesis" evidence=TAS]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR006642
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00734
GO:GO:0005654 GO:GO:0003684 Reactome:REACT_115612 GO:GO:0003887
GO:GO:0006297 GO:GO:0019985 eggNOG:COG0389 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 HSSP:P96022
GeneTree:ENSGT00530000062942 HOGENOM:HOG000082711 KO:K03511
CTD:51426 HOVERGEN:HBG101212 OMA:TCTELYQ EMBL:AADN02067159
EMBL:AADN02067160 EMBL:AADN02067161 EMBL:AY118271 IPI:IPI00586140
RefSeq:NP_989514.1 UniGene:Gga.42393 SMR:Q8AWW1 STRING:Q8AWW1
Ensembl:ENSGALT00000024123 GeneID:374003 KEGG:gga:374003
InParanoid:Q8AWW1 NextBio:20813531 Uniprot:Q8AWW1
Length = 867
Score = 191 (72.3 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 53/183 (28%), Positives = 92/183 (50%)
Query: 1929 LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTP--QIISDFMLNIPLSDLPG 1986
+R I ++T T S G N + A++ + + KPNGQ ++P Q + DF+ ++P+ +PG
Sbjct: 290 IRFRIEQKTQLTASAGIAPNTMLAKMCSDRNKPNGQCRISPERQAVLDFIKDLPIRKVPG 349
Query: 1987 VGHSLLFKLNSLGAQTCGDL--QNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQR 2044
+G L +LG TC +L Q L L +E ++ L + G L + +R
Sbjct: 350 IGKVTEKMLKALGIVTCSELYQQRALLSLLFSEASWRSFLDI---SLGLGSTHLEKDGER 406
Query: 2045 KSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREAS 2104
KS+S E + ++ + ++L E+ + L++ +KGK +TLKL + E AS
Sbjct: 407 KSMSTERTFS-EISKAEDQYSLCQELCRELAQDLQKEGLKGKTVTLKLKNVNFEVKTRAS 465
Query: 2105 KFL 2107
L
Sbjct: 466 TVL 468
Score = 116 (45.9 bits), Expect = 8.8e-07, Sum P(3) = 8.8e-07
Identities = 71/327 (21%), Positives = 138/327 (42%)
Query: 1677 NTREYGLGNGMFVGHALKK-CPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTN 1735
+ R +G+ M G KK CP+L IVP +FE Y++VS + ++A + + L +
Sbjct: 143 HARRFGVRAAM-PGFIAKKLCPHLTIVPLNFEKYRKVSKEVKEILAEYDPHFMPMGL--D 199
Query: 1736 ESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPSPSPILDM 1795
E++LN + E + + + +++ L+ E NTTE +DI + + S + +
Sbjct: 200 EAYLN-VTEHLEERLNWPEDKRRYFLNTE-NTTEKNKEDINIPGTVNIDGYSSSPELFED 257
Query: 1796 STSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNLVEERHLNPIV 1855
TS++D S Q ++ ++ + ++ +I E + L + P
Sbjct: 258 GTSVMDD------DSGQRDQSLKNVV-VFGTSAEEAVKEIRFRIEQKTQLTASAGIAPNT 310
Query: 1856 ILLRFLR-RHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQL 1914
+L + R+ + + E Q +L ++ K K+ + V CS+L
Sbjct: 311 MLAKMCSDRNKPNGQCRISPER-QAVLDFIKDLPIRKVPGIGKVTEKMLKALGIVTCSEL 369
Query: 1915 LQELSLTPLQFA-----SYLRETIAKETGCTCSTGFGSNKLQA--RLATKKAKPNGQFHL 1967
Q+ +L L F+ S+L I+ G T G K + R ++ +K Q+ L
Sbjct: 370 YQQRALLSLLFSEASWRSFL--DISLGLGSTHLEKDGERKSMSTERTFSEISKAEDQYSL 427
Query: 1968 TPQIISDFMLNIPLSDLPGVGHSLLFK 1994
++ + ++ L G +L K
Sbjct: 428 CQELCRELAQDLQKEGLKGKTVTLKLK 454
Score = 99 (39.9 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 32/93 (34%), Positives = 51/93 (54%)
Query: 1557 STMGSMFKQYVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEP-- 1614
++ GS F Y NEL+ K V + IE + + K IT+ + L+ + E E
Sbjct: 44 ASKGSKF--YENELK-KDQQVNQRIEKMMQLKEK--ITQQQLLKAQLQVDKLVLELERSR 98
Query: 1615 ----VIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
I+HIDMD F+ +V +R +PEL+++P+AV
Sbjct: 99 NLSCTIVHIDMDAFYAAVEMRDNPELKEKPIAV 131
Score = 45 (20.9 bits), Expect = 8.8e-07, Sum P(3) = 8.8e-07
Identities = 26/128 (20%), Positives = 49/128 (38%)
Query: 2004 GDLQNISLKRLQNEVGNKNGLTLYKHCRGE--DDKELTFEHQRKSVSAEVNYGIRFQNNQ 2061
G L +++ +N++ +N HC+ E DD + Q + N
Sbjct: 640 GSLVEDTVEISKNDLSRENTFNFLSHCKNENIDDCKENVTDQLAGTGQSASTSENSSGNS 699
Query: 2062 EMETFLKQLAGEVEKRLEEVKMKGKCITL--KLMVRSAEAPREASK--FLGHGVCDYITK 2117
+ F Q+ E R E K G I + ++ +P+ S+ + G D+ +
Sbjct: 700 RDKKFT-QIVSEKPHR--E-KQPGDLIDIPRNASIKQCLSPKRNSQENAVQFGRMDHTEE 755
Query: 2118 SSSLPIYE 2125
+SS +E
Sbjct: 756 TSSSCSFE 763
>TIGR_CMR|DET_0004 [details] [associations]
symbol:DET_0004 "DNA gyrase, B subunit" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 GO:GO:0006261 EMBL:CP000027
GenomeReviews:CP000027_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK05644
RefSeq:YP_180759.1 ProteinModelPortal:Q3ZAJ0 STRING:Q3ZAJ0
GeneID:3229139 KEGG:det:DET0004 PATRIC:21607113
BioCyc:DETH243164:GJNF-4-MONOMER Uniprot:Q3ZAJ0
Length = 642
Score = 196 (74.1 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 59/198 (29%), Positives = 94/198 (47%)
Query: 424 IFINCLIVNPTFDSQTK-ENMTLQKGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDS 481
I C+ ++ K ++ ++K + + +P KL D ++ +++ C L L EGDS
Sbjct: 380 ILEKCITAAKAREAARKARDLIIRKSALDTGTLPGKLADCSE---RDASLCELFLVEGDS 436
Query: 482 AKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTT 541
A A G R + PLRGK+LNV +A+ ++L + EI ++ L +
Sbjct: 437 AGGSAKQGRN---RRFQAILPLRGKILNVEKASPDKMLAHEEIRAIITALAAGIDNDF-- 491
Query: 542 VEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAR 601
D LRY RL++MTD D DGSHI+ L++ F + P L+ L P+ K
Sbjct: 492 --DPAKLRYNRLVLMTDADVDGSHIRTLLLTFFFRHMPRLITESHLFIAQPPLYKIKIGS 549
Query: 602 EELSFYSLPEFEEWKEET 619
E Y+ E E +T
Sbjct: 550 NEHWVYNDAEKETLLSQT 567
Score = 90 (36.7 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 47/205 (22%), Positives = 91/205 (44%)
Query: 160 KVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFK 219
K++ + M H + + + +V+GG +G GA + N + V+ + K ++
Sbjct: 97 KISALETVMTVLH--AGAKFGGKTYQVSGGLHGVGASVVNALAEWTTVKVRRNG--KIYQ 152
Query: 220 QVWKDNMSKVTSPEIKSGSKDDF-TKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAAST 278
Q ++ K ++P + G D T F D F T D + +T R + A
Sbjct: 153 QSYQ--RGKPSTPLEEVGVSDGSGTTTIFKADSQIFSTTEYD---FETLTDRLREIAYLN 207
Query: 279 KDVKVFLNGEKLPVKN---FQD----YVK-LYTDRQDEDGDPVKIIYENVNPRWEVAIAP 330
K ++V++ E+ + F+ +V+ L +R+ P+ I ++ + EVAI
Sbjct: 208 KGLEVYIYDEQSDQERTYYFEGGITGFVRHLNRNREVRHRQPIYITKKSDSTILEVAIQY 267
Query: 331 SDRGFQQ--VSFVNSIATTKGGRHV 353
+D G+ ++F N + T GG H+
Sbjct: 268 ND-GYSDSTLTFANCVNTIDGGTHL 291
Score = 70 (29.7 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GL+ + EI+ N+ D + IK+ + ++ ++SV +NG+GIP+ H K+
Sbjct: 45 GLHHLVYEIVYNSVDEAMAGV-CDRIKVIIYKD-GSVSVEDNGRGIPIDIHPVTKISALE 102
Query: 143 MIFGHLLTSSNYNDEEDKVTG 163
+ L + + + +V+G
Sbjct: 103 TVMTVLHAGAKFGGKTYQVSG 123
>UNIPROTKB|Q89M38 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:224911
"Bradyrhizobium japonicum USDA 110" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR005737 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265
EMBL:BA000040 GenomeReviews:BA000040_GR GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 OMA:GFIQSYC TIGRFAMs:TIGR01055 HSSP:P06982
RefSeq:NP_770995.1 ProteinModelPortal:Q89M38 GeneID:1052126
KEGG:bja:bll4355 PATRIC:21192268
BioCyc:BJAP224911:GJEJ-4381-MONOMER Uniprot:Q89M38
Length = 681
Score = 216 (81.1 bits), Expect = 4.9e-15, Sum P(4) = 4.9e-15
Identities = 60/160 (37%), Positives = 85/160 (53%)
Query: 440 KENMTLQKGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKY 498
+E T +K + +P KL D +DAGT+ S L + EGDSA A R
Sbjct: 430 QEKETARKTAGKKLRLPGKLADCSDAGTEGS---ELFIVEGDSAGGSAKQARD---RKTQ 483
Query: 499 GVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTD 558
V PLRGK+LNV A ++ NA++++LV+ +G +Y ED LRY R++IMTD
Sbjct: 484 AVLPLRGKILNVASAGKDKLTANAQLSDLVQAIGCGTLAQYRE-ED---LRYQRIIIMTD 539
Query: 559 QDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKAT 598
D DG+HI L+I F + P L+ L + P+ K T
Sbjct: 540 ADVDGAHIASLLITFFYRQMPRLIDEGHLFLAVPPLYKLT 579
Score = 59 (25.8 bits), Expect = 4.9e-15, Sum P(4) = 4.9e-15
Identities = 18/82 (21%), Positives = 37/82 (45%)
Query: 173 LLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSP 232
L + ++ + + +GG +G G + N SS VE + S+ K ++ ++ K
Sbjct: 131 LHSGGKFDSKVYETSGGLHGVGISVVNALSSLLEVEVARSQ--KLYRMTFERGHPKGKLE 188
Query: 233 EIKSGSKDDFTKITFTPDLTKF 254
++ + T++ F PD F
Sbjct: 189 DLGKINNRRGTRVRFKPDTDIF 210
Score = 54 (24.1 bits), Expect = 4.9e-15, Sum P(4) = 4.9e-15
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 73 MERREITYVPG-----LYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKG 127
+ RR Y+ G L+ +F E++ N+ D I + ++ + ++V +NG+G
Sbjct: 52 VRRRPGMYIGGTDEKALHHLFAEVIDNSMDEALAG-HATFIGVELSAD-GFLTVTDNGRG 109
Query: 128 IPVVEH 133
IP+ H
Sbjct: 110 IPIDPH 115
Score = 49 (22.3 bits), Expect = 4.9e-15, Sum P(4) = 4.9e-15
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 324 WEVAIAPSDRGFQQVSFVNSIATTKGGRH 352
W VA GF S+ N++ T GG H
Sbjct: 298 WAVAWTADADGFLS-SYTNTVPTPDGGTH 325
Score = 38 (18.4 bits), Expect = 2.0e-13, Sum P(4) = 2.0e-13
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 16 GNGPSPKKKTPANKMS--VEKIY-----QKKSQLEHILLRPDTYIGSVE 57
GN P P+ A+ + E Y + LE + RP YIG +
Sbjct: 16 GNEPKPRAAAKASPRAGGAEADYTAADIEVLEGLEPVRRRPGMYIGGTD 64
>UNIPROTKB|A9WGP2 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:324602
"Chloroflexus aurantiacus J-10-fl" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 EMBL:CP000909 GenomeReviews:CP000909_GR
GO:GO:0009295 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
OMA:IFETTEF ProtClustDB:PRK05644 HOGENOM:HOG000075154
RefSeq:YP_001636597.1 ProteinModelPortal:A9WGP2 STRING:A9WGP2
GeneID:5827483 KEGG:cau:Caur_3009 PATRIC:21417339
BioCyc:CAUR324602:GIXU-3058-MONOMER Uniprot:A9WGP2
Length = 636
Score = 213 (80.0 bits), Expect = 6.4e-15, Sum P(3) = 6.4e-15
Identities = 57/172 (33%), Positives = 86/172 (50%)
Query: 440 KENMTLQKGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK- 497
K T +K + +P KL D +D N C L + EGDSA G GRD+
Sbjct: 390 KVRETARKSAMEGFSLPGKLADCSDP---NPARCELYIVEGDSA-----GGTAKQGRDRR 441
Query: 498 -YGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIM 556
+ PLRGK+LNV ++ ++L NAE+ L+ +G ++ D+ LRY R+ +M
Sbjct: 442 FQAILPLRGKILNVEKSRLDRMLSNAEVRALITAIGTSIGDQF----DLSKLRYHRIFLM 497
Query: 557 TDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYS 608
TD D DGSHI+ L++ F + L+ L P+ + RE++ YS
Sbjct: 498 TDADVDGSHIRTLLLTFFFRHMRPLITNGHLFIAQPPLYRIKHGREQVYTYS 549
Score = 75 (31.5 bits), Expect = 6.4e-15, Sum P(3) = 6.4e-15
Identities = 19/84 (22%), Positives = 42/84 (50%)
Query: 79 TYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKM 138
T + GL+ + E++ N+ D + + +T++++ +++V ++G GIPV H E +
Sbjct: 34 TDINGLHTMVREVVDNSVDEVMAG-RATSVSVTIHRD-GSVTVSDDGSGIPVGIHPKEGI 91
Query: 139 FVPTMIFGHLLTSSNYNDEEDKVT 162
T++ L + KV+
Sbjct: 92 STLTLVMTRLHAGGKFGSGGYKVS 115
Score = 43 (20.2 bits), Expect = 6.4e-15, Sum P(3) = 6.4e-15
Identities = 43/199 (21%), Positives = 80/199 (40%)
Query: 167 TMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNM 226
T++ L + KV+ G +G G N S+ V+ + + + Q ++ +
Sbjct: 95 TLVMTRLHAGGKFGSGGYKVSSGLHGVGVSAVNALSAYMRVDVYRNG--RHYYQEYRAGV 152
Query: 227 SKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKV-FL 285
+++ + T F PD T T LD + D + +R + + K ++ F+
Sbjct: 153 PVTDVIDLEPTDRHG-TTTRFLPD-TSIIQT-LDYNF-DTLAQRFREMSYLNKGLRFKFV 208
Query: 286 NGEKLPVKNFQ------DYVK-LYTDRQDEDGDP--VKIIYENVNPRWEVAIAPSDR-GF 335
+ NF YV+ L ++ P V+ I ++V EVA+ +D
Sbjct: 209 DERTNRELNFYFEGGIVSYVRHLNKEKTVLHRQPFYVERIVDDVMV--EVALQYTDSFDT 266
Query: 336 QQV-SFVNSIATTKGGRHV 353
V +F N+I GG H+
Sbjct: 267 DNVYTFANNINNADGGSHL 285
Score = 40 (19.1 bits), Expect = 1.3e-14, Sum P(3) = 1.3e-14
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 212 SEYKKSFKQVWKDNMSKVTSPEIKSG 237
+ Y ++ K + KDN S +T +++ G
Sbjct: 297 NNYARA-KGLLKDNESNLTGDDVREG 321
>UNIPROTKB|Q9UNA4 [details] [associations]
symbol:POLI "DNA polymerase iota" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005654 GO:GO:0046872 GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 GO:GO:0003887 eggNOG:COG0389
Gene3D:3.30.1490.100 SUPFAM:SSF100879 EMBL:AY094607 EMBL:AC093462
EMBL:AF140501 EMBL:AL136670 EMBL:BC032662 EMBL:AF245438
IPI:IPI00296840 RefSeq:NP_009126.2 UniGene:Hs.438533 PDB:1T3N
PDB:1ZET PDB:2ALZ PDB:2DPI PDB:2DPJ PDB:2FLL PDB:2FLN PDB:2FLP
PDB:2KHU PDB:2KHW PDB:2KTF PDB:2L0F PDB:2L0G PDB:3EPG PDB:3EPI
PDB:3G6V PDB:3G6X PDB:3G6Y PDB:3GV5 PDB:3GV7 PDB:3GV8 PDB:3H40
PDB:3H4B PDB:3H4D PDB:3NGD PDB:3OSN PDB:3Q8P PDB:3Q8Q PDB:3Q8R
PDB:3Q8S PDB:4EBC PDB:4EBD PDB:4EBE PDB:4EYH PDB:4EYI PDB:4FS1
PDB:4FS2 PDBsum:1T3N PDBsum:1ZET PDBsum:2ALZ PDBsum:2DPI
PDBsum:2DPJ PDBsum:2FLL PDBsum:2FLN PDBsum:2FLP PDBsum:2KHU
PDBsum:2KHW PDBsum:2KTF PDBsum:2L0F PDBsum:2L0G PDBsum:3EPG
PDBsum:3EPI PDBsum:3G6V PDBsum:3G6X PDBsum:3G6Y PDBsum:3GV5
PDBsum:3GV7 PDBsum:3GV8 PDBsum:3H40 PDBsum:3H4B PDBsum:3H4D
PDBsum:3NGD PDBsum:3OSN PDBsum:3Q8P PDBsum:3Q8Q PDBsum:3Q8R
PDBsum:3Q8S PDBsum:4EBC PDBsum:4EBD PDBsum:4EBE PDBsum:4EYH
PDBsum:4EYI PDBsum:4FS1 PDBsum:4FS2 ProteinModelPortal:Q9UNA4
SMR:Q9UNA4 IntAct:Q9UNA4 MINT:MINT-1189678 STRING:Q9UNA4
PhosphoSite:Q9UNA4 DMDM:59798440 PaxDb:Q9UNA4 PRIDE:Q9UNA4
DNASU:11201 Ensembl:ENST00000579534 GeneID:11201 KEGG:hsa:11201
UCSC:uc002lfj.4 CTD:11201 GeneCards:GC18P051731 H-InvDB:HIX0014457
HGNC:HGNC:9182 HPA:HPA012000 MIM:605252 neXtProt:NX_Q9UNA4
PharmGKB:PA33502 HOGENOM:HOG000234325 HOVERGEN:HBG053634
InParanoid:Q9UNA4 KO:K03510 OMA:VFYELPE OrthoDB:EOG46T310
ChEMBL:CHEMBL5391 ChiTaRS:POLI EvolutionaryTrace:Q9UNA4
GenomeRNAi:11201 NextBio:42637 Bgee:Q9UNA4 CleanEx:HS_POLI
Genevestigator:Q9UNA4 GermOnline:ENSG00000101751 Uniprot:Q9UNA4
Length = 740
Score = 166 (63.5 bits), Expect = 6.7e-15, Sum P(3) = 6.7e-15
Identities = 62/227 (27%), Positives = 108/227 (47%)
Query: 1875 EAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCS-QLLQELSLTPL---QFASYLR 1930
E + ++ V+ ++ S E V+ VS +Y + S LL L + L Q A+ +R
Sbjct: 152 ENFVDLTEMVEKRLQQLQSDELSAVT-VS-GHVYNNQSINLLDVLHIRLLVGSQIAAEMR 209
Query: 1931 ETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIP-LSDLPGVGH 1989
E + + G T G SNKL A+L + KPN Q L P+ + ++ + ++PG+G+
Sbjct: 210 EAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGY 269
Query: 1990 SLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSA 2049
L +LG + DLQ S K L+ E+G + K GED+ + +S S
Sbjct: 270 KTAKCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSE 329
Query: 2050 EVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKG-KCITLKLMVR 2095
E ++ + + E + +++L + L V G K T++L++R
Sbjct: 330 EDSFK-KCSSEVEAKNKIEELLASL---LNRVCQDGRKPHTVRLIIR 372
Score = 100 (40.3 bits), Expect = 6.7e-15, Sum P(3) = 6.7e-15
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 1607 PSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
P+P+ VI+H+D+DCF+ V + +PEL+D+P+ V
Sbjct: 46 PTPNASSRVIVHVDLDCFYAQVEMISNPELKDKPLGV 82
Score = 70 (29.7 bits), Expect = 6.7e-15, Sum P(3) = 6.7e-15
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVP-YDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNES 1737
R+ G+ M V A +KCP L +V D Y+E+SY + L+ + +E + N
Sbjct: 96 RKLGVKKLMNVRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFV 155
Query: 1738 FLNALPEDIRQEVL-DDLS 1755
L + E Q++ D+LS
Sbjct: 156 DLTEMVEKRLQQLQSDELS 174
Score = 37 (18.1 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 506 KLLNVREATHK---QILENAE 523
KL+NVR+A K +L N E
Sbjct: 102 KLMNVRDAKEKCPQLVLVNGE 122
>TIGR_CMR|ECH_0620 [details] [associations]
symbol:ECH_0620 "DNA gyrase, B subunit" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 HOGENOM:HOG000075155
KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:YP_507430.1 ProteinModelPortal:Q2GGK3
STRING:Q2GGK3 GeneID:3927738 KEGG:ech:ECH_0620 PATRIC:20576692
BioCyc:ECHA205920:GJNR-622-MONOMER Uniprot:Q2GGK3
Length = 798
Score = 190 (71.9 bits), Expect = 8.0e-15, Sum P(2) = 8.0e-15
Identities = 56/162 (34%), Positives = 84/162 (51%)
Query: 447 KGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRG 505
K F T +P KL D + + S L + EG+SA A G R V L+G
Sbjct: 407 KNGFDFTILPGKLADCQEKSPELS---ELFIVEGNSAGGSAKQGRD---RRSQAVLSLKG 460
Query: 506 KLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSH 565
K+LNV A+ +IL +AEI +L+ +G S T D++ +RY +++IMTD D DGSH
Sbjct: 461 KILNVERASLDRILSSAEIASLITAIG---SNIGTENFDIEKVRYHKVIIMTDADVDGSH 517
Query: 566 IKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFY 607
I+ L++ F ++ +L P+ K TK ++E FY
Sbjct: 518 IRTLLLTFFFRYMREVIEKGYLYIAQPPLYKVTKHKKE--FY 557
Score = 96 (38.9 bits), Expect = 8.0e-15, Sum P(2) = 8.0e-15
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GL+ + E++ N+ D N I I + Q ++SV +NG+GIPV H+DE M
Sbjct: 34 GLHHMVYEVIDNSIDEALAG-FCNKIDIVI-QSDGSVSVVDNGRGIPVDMHEDEGMSAAE 91
Query: 143 MIFGHLLTSSNYNDEEDKVTG 163
+I L ++ KV+G
Sbjct: 92 VIMTQLHAGGKFDHNSYKVSG 112
Score = 67 (28.6 bits), Expect = 8.1e-12, Sum P(2) = 8.1e-12
Identities = 25/90 (27%), Positives = 38/90 (42%)
Query: 168 MIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSS--KFVVETSCSEYKKSFKQ-VWKD 224
+I L ++ KV+GG +G G + N SS + + + EY F+ +
Sbjct: 92 VIMTQLHAGGKFDHNSYKVSGGLHGVGISVVNALSSWLELTIWRNGKEYFMRFEDGITVK 151
Query: 225 NMSKVTSPEIKSGSKDDFTKITFTPDLTKF 254
++S V K G TKITF P F
Sbjct: 152 SLSVVGENTTKKG-----TKITFLPSKNIF 176
>TIGR_CMR|BA_0005 [details] [associations]
symbol:BA_0005 "DNA gyrase, B subunit" species:198094
"Bacillus anthracis str. Ames" [GO:0003916 "DNA topoisomerase
activity" evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF EMBL:AF090333
RefSeq:NP_842577.1 RefSeq:YP_016608.1 RefSeq:YP_026296.1
ProteinModelPortal:Q9X3Y6 PRIDE:Q9X3Y6 DNASU:1083919
EnsemblBacteria:EBBACT00000010328 EnsemblBacteria:EBBACT00000015641
EnsemblBacteria:EBBACT00000021045 GeneID:1083919 GeneID:2816408
GeneID:2848886 KEGG:ban:BA_0005 KEGG:bar:GBAA_0005 KEGG:bat:BAS0005
ProtClustDB:PRK05644 BioCyc:BANT260799:GJAJ-5-MONOMER
BioCyc:BANT261594:GJ7F-5-MONOMER Uniprot:Q9X3Y6
Length = 640
Score = 180 (68.4 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 47/175 (26%), Positives = 90/175 (51%)
Query: 443 MTLQKGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKY--G 499
+T +K + + +P KL D + +K+ + + EGDSA G GRD++
Sbjct: 397 LTRRKSALEVSSLPGKLADCS---SKDPAISEIYIVEGDSA-----GGSAKQGRDRHFQA 448
Query: 500 VFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQ 559
+ PL+GK++NV +A +IL N E+ ++ +G + D++ RY +++IMTD
Sbjct: 449 ILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDF----DIEKARYHKVIIMTDA 504
Query: 560 DQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEE 614
D DG+HI+ L++ F + ++ ++ P+ K + ++ Y+ E E+
Sbjct: 505 DVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQGKKIQYAYNEKELEK 559
Score = 87 (35.7 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 44/179 (24%), Positives = 78/179 (43%)
Query: 185 KVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTK 244
KV+GG +G GA + N S++ +E K Q ++ + I G D
Sbjct: 115 KVSGGLHGVGASVVNALSTE--LEVFVHREGKIHYQKYERGIPVADLKVI--GDTDQTGT 170
Query: 245 IT-FTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNG--EKLPVKNF--QDYV 299
IT F PD F+ T++ + D + R + A +++K+ + E K F + +
Sbjct: 171 ITRFKPDPEIFQETTVYE--FDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGI 228
Query: 300 KLYTDRQDEDGDPV--KIIY-ENVNPRWEVAIAPS-DRGFQQ--VSFVNSIATTKGGRH 352
K Y + + P+ + +Y E +V ++ + G+ SF N+I T +GG H
Sbjct: 229 KSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTH 287
Score = 69 (29.3 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVN-QETNTISVWNNGKGIPV-VEHK 134
GL+ + EI+ N+ D C +I V+ +E N+I V +NG+GIPV ++ K
Sbjct: 40 GLHHLVWEIVDNSIDEALAG---YCDEINVSIEEDNSIRVTDNGRGIPVGIQEK 90
Score = 39 (18.8 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 22 KKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGS 55
+K+ N +I Q LE + RP YIGS
Sbjct: 3 QKQMQENSYDESQI-QVLEGLEAVRKRPGMYIGS 35
>UNIPROTKB|J9P5L3 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 GO:GO:0003684 GO:GO:0006281
GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 GeneTree:ENSGT00530000062942 KO:K03511 CTD:51426
EMBL:AAEX03002157 RefSeq:XP_536321.2 Ensembl:ENSCAFT00000046862
GeneID:479180 KEGG:cfa:479180 Uniprot:J9P5L3
Length = 861
Score = 179 (68.1 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 51/180 (28%), Positives = 88/180 (48%)
Query: 1929 LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTP--QIISDFMLNIPLSDLPG 1986
+R I ++T T S G N + A++ + K KPNGQ+ + P Q + DF+ ++P+ + G
Sbjct: 297 IRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQVLPNRQAVMDFIKDLPIRKVSG 356
Query: 1987 VGHSLLFKLNSLGAQTCGDL--QNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQR 2044
+G L +LG TC +L Q L L +E + L + G L + +R
Sbjct: 357 IGKVTEKMLKALGIITCTELYQQRALLSLLFSETSWHHFLHI---SLGLGSTHLARDGER 413
Query: 2045 KSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREAS 2104
KS+S E + +E ++L E+ + L++ +KG+ +T+KL + E AS
Sbjct: 414 KSMSVERTFS-EISKAEEQYNLCQELCSELAQDLQKEGLKGRTVTIKLKNVNFEVKTRAS 472
Score = 106 (42.4 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 36/112 (32%), Positives = 62/112 (55%)
Query: 1540 NEDFLG-EFYNKSRLHHL---STMGSMFKQYVNELREKHDGVFRGIEAIRKWK---TSLG 1592
N++ G E +K +++ + +T GS F Y NEL+ K V + IE + + K TS
Sbjct: 22 NDNKAGMEGLDKDKINKIIMEATKGSRF--YGNELK-KEKQVNQRIENMMQQKAQITSQQ 78
Query: 1593 ITEDEDLEETFSDNPSPSEP-EPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
+ + + + ++ S I+HIDMD F+ +V +R +PEL+D+P+AV
Sbjct: 79 LRKAQLQVDRYAMELEQSRDLNNTIVHIDMDAFYAAVEMRDNPELKDKPIAV 130
Score = 87 (35.7 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 72/334 (21%), Positives = 137/334 (41%)
Query: 1679 REYGLGNGMFVGHALKK-CPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNES 1737
R +G+ M G K+ CP L IVP +F+ Y+ VS + ++A N A+SL +E+
Sbjct: 144 RRFGVRAAM-PGFIAKRLCPQLIIVPPNFDKYRAVSTEVKEILADYDPNFLAMSL--DEA 200
Query: 1738 FLNALPE-DIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTL-VRTPSPSPIL-D 1794
+LN RQ +D R+ + T PL D + + L S SP+L D
Sbjct: 201 YLNITKHLQERQNWPED-KRKYFI-----KTGNPLENDKPRKEVNKLREHERSISPLLFD 254
Query: 1795 MSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEP--SDIEMFSEYLSNLVEERHLN 1852
S L + + + ++ +T+ + + E +I E + L +
Sbjct: 255 DSPPDLQSQGNPLQGNSEEEDNPQTLQNSIVFGTSAEEVVKEIRFRIEQKTTLTASAGIA 314
Query: 1853 PIVILLRFLR-RHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDC 1911
P +L + ++ + V Q ++ ++ K S K+ + + C
Sbjct: 315 PNTMLAKVCSDKNKPNGQYQVLPNR-QAVMDFIKDLPIRKVSGIGKVTEKMLKALGIITC 373
Query: 1912 SQLLQELSLTPLQFAS-----YLRETIAKETGCTCSTGFGSNKLQA--RLATKKAKPNGQ 1964
++L Q+ +L L F+ +L I+ G T G K + R ++ +K Q
Sbjct: 374 TELYQQRALLSLLFSETSWHHFLH--ISLGLGSTHLARDGERKSMSVERTFSEISKAEEQ 431
Query: 1965 FHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSL 1998
++L ++ S+ ++ L G ++ KL ++
Sbjct: 432 YNLCQELCSELAQDLQKEGLKG--RTVTIKLKNV 463
Score = 43 (20.2 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 808 FHDNELAKPQKTGPQLERQERQAAE 832
F+ NEL K ++ ++E +Q A+
Sbjct: 49 FYGNELKKEKQVNQRIENMMQQKAQ 73
Score = 42 (19.8 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 231 SPEIKSGS-KDDFTKITFTPDLTKFKMTSLDKDMVDLITRRA 271
S + K+GS KDD D K M LDKD ++ I A
Sbjct: 3 STKEKNGSYKDDLLLRMGLND-NKAGMEGLDKDKINKIIMEA 43
Score = 37 (18.1 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 1666 YRQRTMNRMGLNTREYGL 1683
Y+ + RMGLN + G+
Sbjct: 11 YKDDLLLRMGLNDNKAGM 28
Score = 37 (18.1 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 1393 RTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDS 1425
+T + + ++ P ++ KL+ ++ I P DS
Sbjct: 224 KTGNPLENDKPRKEVNKLREHERSISPLLFDDS 256
>UNIPROTKB|P0AES6 [details] [associations]
symbol:gyrB species:83333 "Escherichia coli K-12"
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA;IMP] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=IDA] [GO:0006265
"DNA topological change" evidence=IEA;IMP] [GO:0005524 "ATP
binding" evidence=IEA;IDA] [GO:0042493 "response to drug"
evidence=IDA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0046677 "response to antibiotic"
evidence=IEA] HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0042493 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046677
GO:GO:0006351 EMBL:L10328 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009330 GO:GO:0009295 EMBL:X04341
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 PDB:3NUH PDBsum:3NUH
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF ProtClustDB:PRK14939
EMBL:D87842 EMBL:M15548 PIR:D65172 RefSeq:YP_026241.1
RefSeq:YP_491736.1 PDB:1AJ6 PDB:1EI1 PDB:1KZN PDB:3G7E PDB:4DUH
PDBsum:1AJ6 PDBsum:1EI1 PDBsum:1KZN PDBsum:3G7E PDBsum:4DUH
ProteinModelPortal:P0AES6 SMR:P0AES6 DIP:DIP-48005N IntAct:P0AES6
PaxDb:P0AES6 PRIDE:P0AES6 EnsemblBacteria:EBESCT00000002623
EnsemblBacteria:EBESCT00000017095 GeneID:12930543 GeneID:948211
KEGG:ecj:Y75_p3474 KEGG:eco:b3699 PATRIC:32122895 EchoBASE:EB0419
EcoGene:EG10424 BioCyc:EcoCyc:EG10424-MONOMER
BioCyc:ECOL316407:JW5625-MONOMER BioCyc:MetaCyc:EG10424-MONOMER
BindingDB:P0AES6 ChEMBL:CHEMBL1826 DrugBank:DB00817
EvolutionaryTrace:P0AES6 Genevestigator:P0AES6 Uniprot:P0AES6
Length = 804
Score = 190 (71.9 bits), Expect = 1.5e-14, Sum P(4) = 1.5e-14
Identities = 52/162 (32%), Positives = 79/162 (48%)
Query: 443 MTLQKGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVF 501
MT +KG+ +P KL D + S L L EGDSA A G R +
Sbjct: 391 MTRRKGALDLAGLPGKLADCQERDPALS---ELYLVEGDSAGGSAKQGRN---RKNQAIL 444
Query: 502 PLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQ 561
PL+GK+LNV +A ++L + E+ L+ LG + + LRY ++IMTD D
Sbjct: 445 PLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDK---LRYHSIIIMTDADV 501
Query: 562 DGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREE 603
DGSHI+ L++ F + P ++ + P+ K K ++E
Sbjct: 502 DGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQE 543
Score = 108 (43.1 bits), Expect = 1.5e-14, Sum P(4) = 1.5e-14
Identities = 54/239 (22%), Positives = 104/239 (43%)
Query: 126 KGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDK 185
K I V H D + V G + + + +E V+ T++ H ++D K
Sbjct: 57 KEIIVTIHADNSVSVQDD--GRGIPTGIHPEEGVSAAEVIMTVL--H--AGGKFDDNSYK 110
Query: 186 VTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDF-TK 244
V+GG +G G + N S K +E K +Q+++ + + +P +G + T
Sbjct: 111 VSGGLHGVGVSVVNALSQK--LELVIQREGKIHRQIYEHGVPQ--APLAVTGETEKTGTM 166
Query: 245 ITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDY---VKL 301
+ F P L F T++ + +++ +R + + V + L ++ ++ Y +K
Sbjct: 167 VRFWPSLETF--TNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKA 224
Query: 302 YTDRQDEDGDPV--KIIY---ENVNPRWEVAIAPSDRGFQQ--VSFVNSIATTKGGRHV 353
+ + +++ P+ I Y E EVA+ +D GFQ+ F N+I GG H+
Sbjct: 225 FVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWND-GFQENIYCFTNNIPQRDGGTHL 282
Score = 86 (35.3 bits), Expect = 2.4e-12, Sum P(4) = 2.4e-12
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GL+ + E++ NA D I +T++ + N++SV ++G+GIP H +E +
Sbjct: 35 GLHHMVFEVVDNAIDEALAGHCKEII-VTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAE 92
Query: 143 MIFGHLLTSSNYNDEEDKVTG 163
+I L ++D KV+G
Sbjct: 93 VIMTVLHAGGKFDDNSYKVSG 113
Score = 43 (20.2 bits), Expect = 1.5e-14, Sum P(4) = 1.5e-14
Identities = 10/55 (18%), Positives = 33/55 (60%)
Query: 1723 LTLNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSR-EQNTTEPLAQDII 1776
+++ ++ +L+TN S AL + ++++ + + Q +++R E+ + + +++I
Sbjct: 557 ISIALDGATLHTNAS-APALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELI 610
Score = 38 (18.4 bits), Expect = 1.5e-14, Sum P(4) = 1.5e-14
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 426 INCLIVNPTFDSQTKENM 443
++ + +P F SQTK+ +
Sbjct: 323 VSVKVPDPKFSSQTKDKL 340
>UNIPROTKB|Q5Q9G8 [details] [associations]
symbol:POLK "Polymerase kappa isoform 1" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR006642
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00734
GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 EMBL:AC010245
EMBL:AC116341 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 UniGene:Hs.732105 HGNC:HGNC:9183
HOVERGEN:HBG101212 EMBL:AC026424 EMBL:AY769929 IPI:IPI01013677
SMR:Q5Q9G8 STRING:Q5Q9G8 Ensembl:ENST00000380481 Uniprot:Q5Q9G8
Length = 780
Score = 189 (71.6 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 49/179 (27%), Positives = 91/179 (50%)
Query: 1929 LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTP--QIISDFMLNIPLSDLPG 1986
+R I ++T T S G N + A++ + K KPNGQ+ + P Q + DF+ ++P+ + G
Sbjct: 207 IRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSG 266
Query: 1987 VGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCR-GEDDKELTFEHQRK 2045
+G L +LG TC +L + L + + ++ + H G LT + +RK
Sbjct: 267 IGKVTEKMLKALGIITCTELYQ--QRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERK 324
Query: 2046 SVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREAS 2104
S+S E + +E + ++L E+ + L++ ++KG+ +T+KL + E AS
Sbjct: 325 SMSVERTFS-EINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVNFEVKTRAS 382
Score = 94 (38.1 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 16/28 (57%), Positives = 24/28 (85%)
Query: 1616 IMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
I+HIDMD F+ +V +R +PEL+D+P+AV
Sbjct: 13 IVHIDMDAFYAAVEMRDNPELKDKPIAV 40
>UNIPROTKB|A6UX65 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:381754
"Pseudomonas aeruginosa PA7" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 EMBL:CP000744 GenomeReviews:CP000744_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187
HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939
RefSeq:YP_001345400.1 ProteinModelPortal:A6UX65 SMR:A6UX65
STRING:A6UX65 GeneID:5358744 KEGG:pap:PSPA7_0004 PATRIC:19821910
BioCyc:PAER381754:GHMY-79-MONOMER Uniprot:A6UX65
Length = 806
Score = 208 (78.3 bits), Expect = 1.6e-14, Sum P(4) = 1.6e-14
Identities = 68/253 (26%), Positives = 114/253 (45%)
Query: 443 MTLQKGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVF 501
MT +KG+ +P KL D + K+ L + EGDSA A G R +
Sbjct: 393 MTRRKGALDIAGLPGKLADCQE---KDPALSELYIVEGDSAGGSAKQGRN---RRTQAIL 446
Query: 502 PLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQ 561
PL+GK+LNV +A ++L + E+ L+ LG ++ ++ LRY ++IMTD D
Sbjct: 447 PLKGKILNVEKARFDKMLSSQEVGTLITALGCGIGREEYNIDK---LRYHNIIIMTDADV 503
Query: 562 DGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN 621
DGSHI+ L++ F P L+ ++ P+ K + ++E EE+ ++
Sbjct: 504 DGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLYKVKRGKQEQYIKDDQAMEEYMTQSAL 563
Query: 622 WHTXXXXXXXXXXXTGVLLFKM-NLHKVTSDSISMFIGRIEP----EWYIPIIPMVLVNG 676
G L K+ N ++ ++ + R+ P E +I +P V V+
Sbjct: 564 EDASLHVNEHAPGLAGAALEKLVNEYRGVIATLKR-LSRLYPQELTEHFI-YLPTVSVDD 621
Query: 677 A--EGIGTGWMTK 687
E + GW+ K
Sbjct: 622 LANESVMQGWLEK 634
Score = 91 (37.1 bits), Expect = 1.6e-14, Sum P(4) = 1.6e-14
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN-TISVWNNGKGIPVVEHKDEKMFVP 141
GL+ + E++ N+ D C +I++ T+ +I+V +NG+GIPV HK+E +
Sbjct: 37 GLHHMVFEVVDNSIDEALAG---YCSEISITIHTDESITVRDNGRGIPVDIHKEEGVSAA 93
Query: 142 TMIFGHLLTSSNYNDEEDKVTG 163
+I L ++D KV+G
Sbjct: 94 EVIMTVLHAGGKFDDNTYKVSG 115
Score = 89 (36.4 bits), Expect = 2.5e-14, Sum P(4) = 2.5e-14
Identities = 49/237 (20%), Positives = 95/237 (40%)
Query: 128 IPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVT 187
I + H DE + V G + + +E V+ T++ H ++D KV+
Sbjct: 61 ISITIHTDESITVRDN--GRGIPVDIHKEEGVSAAEVIMTVL--H--AGGKFDDNTYKVS 114
Query: 188 GGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDF-TKIT 246
GG +G G + N S + + + + K ++QV+ + + E+ G D T++
Sbjct: 115 GGLHGVGVSVVNALSHE--LRLTIRRHNKVWEQVYHHGVPQFPLREV--GETDGSGTEVH 170
Query: 247 FTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDY---VKLYT 303
F P F D ++ +R + + V + L E+ + Y +K +
Sbjct: 171 FKPSPETFSNIHFSWD---ILAKRIRELSFLNSGVGILLRDERTGKEELFKYEGGLKAFV 227
Query: 304 DRQDEDGDPVKIIYE-NVNPRW-----EVAIAPSDRGFQQV-SFVNSIATTKGGRHV 353
+ + + V ++ NV EVA+ +D + + F N+I GG H+
Sbjct: 228 EYLNTNKSAVNQVFHFNVQREEDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHL 284
Score = 40 (19.1 bits), Expect = 1.6e-14, Sum P(4) = 1.6e-14
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 1534 STKNASNEDFLGEFYNK--SRLHHLSTMGSMFKQYVNELREKH 1574
S + +NE + + K +RL G +K + E RE+H
Sbjct: 618 SVDDLANESVMQGWLEKFQARLSAAEKSGLTYKASLREDRERH 660
Score = 39 (18.8 bits), Expect = 1.6e-14, Sum P(4) = 1.6e-14
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 426 INCLIVNPTFDSQTKENM 443
I+ + +P F SQTK+ +
Sbjct: 325 ISVKVPDPKFSSQTKDKL 342
Score = 38 (18.4 bits), Expect = 2.5e-14, Sum P(4) = 2.5e-14
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 1119 VLPGWESNLRPSADKAESRKRTQTSQGTESEERKGHL 1155
V+ GW + AE K T + + E+R+ HL
Sbjct: 627 VMQGWLEKFQARLSAAE--KSGLTYKASLREDRERHL 661
>UNIPROTKB|E9PST3 [details] [associations]
symbol:Polk "Protein Polk" species:10116 "Rattus
norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00734 RGD:620058
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100
SUPFAM:SSF100879 IPI:IPI00777918 Ensembl:ENSRNOT00000061463
ArrayExpress:E9PST3 Uniprot:E9PST3
Length = 793
Score = 154 (59.3 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 50/199 (25%), Positives = 96/199 (48%)
Query: 1910 DCSQL-LQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLT 1968
+C ++ + L++T F LR +A+ GC N + A++ + K KPNGQ+ +
Sbjct: 226 NCRKIGILTLAMTTGNF-HLLR--LAQPQGC-----IAPNTMLAKVCSDKNKPNGQYQIV 277
Query: 1969 PQ--IISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTL 2026
P + DF+ ++P+ + G+G L +LG TC +L + L + + +++
Sbjct: 278 PSRSAVMDFIKDLPIRKVSGIGKVTEKMLLALGIVTCTELYQ--QRALLSLLFSESSWHY 335
Query: 2027 YKHCR-GEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKG 2085
+ H G +L + +RKS+S E + +E + ++L E+ L++ +KG
Sbjct: 336 FLHVALGLGSTDLARDGERKSMSVERTFS-EINKTEEQYSLCQELCTELAHDLQKEGLKG 394
Query: 2086 KCITLKLMVRSAEAPREAS 2104
+ +T+KL E AS
Sbjct: 395 RTVTIKLKNVDFEVKTRAS 413
Score = 99 (39.9 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 34/112 (30%), Positives = 62/112 (55%)
Query: 1540 NEDFLG-EFYNKSRLHHL---STMGSMFKQYVNELREKHDGVFRGIEAIRKWK---TSLG 1592
N++ G E +K +++ + +T GS F Y NEL+ K V + IE + + K TS
Sbjct: 21 NDNKAGMEGLDKEKINKIIMEATKGSRF--YGNELK-KEKQVNQRIENMMQQKAQITSQQ 77
Query: 1593 ITEDEDLEETFSDNPSPSEP-EPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
+ + + + F+ + I+H+DMD F+ +V +R +PEL+++P+AV
Sbjct: 78 LRKAQLQVDRFAMELERNRNLNNTIVHVDMDAFYAAVEMRDNPELKEKPIAV 129
Score = 81 (33.6 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 1677 NTREYGLGNGMFVGHALKK-CPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTN 1735
+ R +G+ M G K+ CP L IVP +F+ Y+ VS + ++A N A+SL +
Sbjct: 141 HARRFGVRAAM-PGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSL--D 197
Query: 1736 ESFLN 1740
E++LN
Sbjct: 198 EAYLN 202
Score = 43 (20.2 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 1901 AVSCDEMYVDCSQLLQE 1917
A+S DE Y++ +Q LQE
Sbjct: 193 AMSLDEAYLNITQHLQE 209
Score = 43 (20.2 bits), Expect = 7.5e-09, Sum P(3) = 7.5e-09
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 808 FHDNELAKPQKTGPQLERQERQAAE 832
F+ NEL K ++ ++E +Q A+
Sbjct: 48 FYGNELKKEKQVNQRIENMMQQKAQ 72
Score = 39 (18.8 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 1657 VDRQAEFDIYRQRTMNRMGLNTREYGL 1683
+D E + ++ + RMGLN + G+
Sbjct: 1 MDNTKEKNNFKDALLLRMGLNDNKAGM 27
>UNIPROTKB|Q8A3C1 [details] [associations]
symbol:BT_3033 "DNA topoisomerase IV subunit B"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 EMBL:AE015928
GenomeReviews:AE015928_GR GO:GO:0009295 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075156 KO:K02622
ProtClustDB:PRK05559 HSSP:P06982 OMA:VFESQTK RefSeq:NP_811945.1
ProteinModelPortal:Q8A3C1 GeneID:1074020 KEGG:bth:BT_3033
PATRIC:21061047 BioCyc:BTHE226186:GJXV-3097-MONOMER Uniprot:Q8A3C1
Length = 625
Score = 208 (78.3 bits), Expect = 3.2e-14, Sum P(4) = 3.2e-14
Identities = 115/465 (24%), Positives = 185/465 (39%)
Query: 173 LLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSP 232
L T Y+ + K + G NG G K N SS+F V S + K K N+ +
Sbjct: 106 LNTGGKYDSKAFKKSVGLNGVGVKAVNALSSRFEVR-SYRDGKVRIATFSKGNLQTDVTQ 164
Query: 233 EIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPV 292
+ + +D+ T I F PD T F + ++ + R Y +T + + NG ++
Sbjct: 165 DTE---EDNGTFIFFEPDNTLFVNYCFKPEFIETMLRN-Y-TYLNT-GLAIIYNGHRILS 218
Query: 293 KNFQDYVKLYTDRQDEDG-DP-VKIIYENVNPRWEVAIAPSDR-GFQQVSFVNSIATTKG 349
+N V L D G P V + E++ E+A + + G + SFVN TT+G
Sbjct: 219 RN--GLVDLLNDNMTATGLYPIVHLKGEDI----EIAFTHTGQYGEEYYSFVNGQHTTQG 272
Query: 350 GRHVDAVVD--AXXXXXXXXXXXXXXDLGCTIIMLFGXXXXXXXXXXLQMAKTLIDIGVR 407
G H A + A D+ ++ K L +
Sbjct: 273 GTHQSAFKEHIARTIKEFFNKNMDYTDIRNGLVAAIAVNVEEPIFESQTKTK-LGSTNMT 331
Query: 408 LGGMALKPFQ---VKNHIWIFINCLI-VNPTFDSQTKENMTLQKGSFGSTCVP------- 456
GG+ + + +K + F++ V + +E+ +K G T +
Sbjct: 332 PGGVTVNKYVGDFIKLEVDNFLHKNADVAEVMQQKIQESEKERKAIAGVTKLARERAKKA 391
Query: 457 -----KLEDA----NDAGTKN-SIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGK 506
KL D ND K D + +TEGDSA V + VF LRGK
Sbjct: 392 NLHNRKLRDCRIHLNDPKGKGMEEDSCIFITEGDSASGSITKSRDV---NTQAVFSLRGK 448
Query: 507 LLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHI 566
LN T K + EN E N L L ++ + ++ LRY ++++ TD D DG HI
Sbjct: 449 PLNSFGLTKKVVYENEEFNLLQAALNIE--------DGIEGLRYNKVIVATDADVDGMHI 500
Query: 567 KGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPE 611
+ L+I F +P L++ + TP+ + ++ + YS E
Sbjct: 501 RLLLITFFLQFFPDLIKKGHVYILQTPLFRVRNKKKTVYCYSEDE 545
Score = 63 (27.2 bits), Expect = 3.2e-14, Sum P(4) = 3.2e-14
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 83 GLYKIFDEILVNACDN-KQRDPKMNCIKITVNQETNTISVWNNGKGIP 129
G+Y + E++ N+ D K + K I+ITV +E +SV + G+GIP
Sbjct: 51 GIYVLLKEVIDNSIDEFKMQAGKK--IEITV-EENLRVSVRDYGRGIP 95
Score = 51 (23.0 bits), Expect = 3.2e-14, Sum P(4) = 3.2e-14
Identities = 19/88 (21%), Positives = 42/88 (47%)
Query: 1835 IEMFSEYLSNLVEERHLNPIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSS 1894
I F ++ +L+++ H + IL L R V K+ TV+ + E ++ + + +
Sbjct: 505 ITFFLQFFPDLIKKGH---VYILQTPLFR-VRNKKKTVYCYSEDERVNAINELSPNPEIT 560
Query: 1895 ESKIVSAVSCDEM--YVDCSQLLQELSL 1920
K + +S DE ++ L++++L
Sbjct: 561 RFKGLGEISPDEFKHFIGKDMRLEQVTL 588
Score = 46 (21.3 bits), Expect = 3.2e-14, Sum P(4) = 3.2e-14
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 40 SQLEHILLRPDTYIG 54
S +EH+ RP YIG
Sbjct: 26 SDMEHVRTRPGMYIG 40
>RGD|1305212 [details] [associations]
symbol:Poli "polymerase (DNA directed), iota" species:10116
"Rattus norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO] [GO:0005622 "intracellular" evidence=ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0008152 "metabolic process" evidence=ISO]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
RGD:1305212 GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 EMBL:CH473971
GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 GeneTree:ENSGT00530000062942 CTD:11201 KO:K03510
OrthoDB:EOG46T310 IPI:IPI00870858 RefSeq:NP_001099607.1
UniGene:Rn.136855 Ensembl:ENSRNOT00000016189 GeneID:291526
KEGG:rno:291526 NextBio:632673 Uniprot:D4A8I8
Length = 732
Score = 168 (64.2 bits), Expect = 3.3e-14, Sum P(3) = 3.3e-14
Identities = 59/227 (25%), Positives = 104/227 (45%)
Query: 1875 EAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPL----QFASYLR 1930
E + ++ V+ ++ PS E + S +Y + S L + L Q A+ +R
Sbjct: 147 ENFVDLTEMVEKRLQQLPSDE--VPSVTMSGHVYNNQSVNLHSSTHVRLAVGSQIAAEMR 204
Query: 1931 ETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIP-LSDLPGVGH 1989
E + + G T G NKL A+L + KPN Q L P+ + ++ + ++PG+G+
Sbjct: 205 EAMHNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEMPGIGY 264
Query: 1990 SLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSA 2049
+L LG + DLQ +K L+ E+G + K GED +T +S S
Sbjct: 265 KTAKRLEVLGINSVHDLQTFPIKTLEKELGISVAQRIRKLSFGEDKSPVTPSGPPQSFSE 324
Query: 2050 EVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKG-KCITLKLMVR 2095
E + + + E +T +++L + L V G K T++L++R
Sbjct: 325 EDTFK-KCSSEVEAKTKIEELLSSL---LNRVCHDGRKPHTIRLVIR 367
Score = 91 (37.1 bits), Expect = 3.3e-14, Sum P(3) = 3.3e-14
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 1607 PSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
PS VI+H+D+DCF+ V + +PEL+D+P+ V
Sbjct: 41 PSRIASSRVIVHVDLDCFYAQVEMISNPELKDKPLGV 77
Score = 70 (29.7 bits), Expect = 3.3e-14, Sum P(3) = 3.3e-14
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVP-YDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNES 1737
R+ G+ M V A +KCP L +V D Y+E+SY + L+ + +E + N
Sbjct: 91 RKLGVKKLMNVRDAKEKCPQLVLVNGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFV 150
Query: 1738 FLNALPEDIRQEVLDD 1753
L + E Q++ D
Sbjct: 151 DLTEMVEKRLQQLPSD 166
Score = 37 (18.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 506 KLLNVREATHK---QILENAE 523
KL+NVR+A K +L N E
Sbjct: 97 KLMNVRDAKEKCPQLVLVNGE 117
>UNIPROTKB|F1NCM3 [details] [associations]
symbol:POLH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006290 "pyrimidine dimer repair" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0010225 "response to
UV-C" evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
Gene3D:3.30.1490.100 SUPFAM:SSF100879 InterPro:IPR017061
PIRSF:PIRSF036603 GeneTree:ENSGT00530000062942 EMBL:AADN02011866
EMBL:AADN02011865 IPI:IPI00818532 Ensembl:ENSGALT00000038044
ArrayExpress:F1NCM3 Uniprot:F1NCM3
Length = 657
Score = 206 (77.6 bits), Expect = 3.6e-14, Sum P(4) = 3.6e-14
Identities = 58/199 (29%), Positives = 99/199 (49%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
++++S D V+C L +L++ + +R + K TG CS G NK+ A+LA
Sbjct: 166 LASLSFDN--VNCPDL--QLAMGAV-IVEEIRVAVEKATGFRCSAGISHNKMLAKLACGL 220
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNS-LGAQTCGDLQNISLKRLQNE 2017
KPN Q ++ + + +P+S + +G L + LG + G++ S LQ
Sbjct: 221 NKPNRQTLVSSRSVPQLFSQMPVSSIRNLGGKLGVAITDILGVEYIGEVTKFSEMELQTH 280
Query: 2018 VGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNY-G-IRFQNNQEMETFLKQLAGEVE 2075
G+K G LY CRG DD+ + H +S+ N+ G +E++ +L QLA E+E
Sbjct: 281 FGDKTGSWLYDLCRGIDDEPVKNRHLPQSIGCSKNFPGKTALATQKEVQHWLLQLALELE 340
Query: 2076 KRLEEVKMKGKCITLKLMV 2094
RL + + + + +LMV
Sbjct: 341 SRLIKDRSQNHRVAKQLMV 359
Score = 75 (31.5 bits), Expect = 3.6e-14, Sum P(4) = 3.6e-14
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 1613 EPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
E V+ +DMDCFF+ V R P L+ P AV
Sbjct: 6 ERVVALVDMDCFFMQVEQRFDPRLRGRPCAV 36
Score = 49 (22.3 bits), Expect = 3.6e-14, Sum P(4) = 3.6e-14
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKI--VPY-----DFEGYKEVSYCLYNLIASLTLNIEAVS 1731
R +G+ GM+ A CP L + VP D Y+E S + +++ IE S
Sbjct: 55 RAFGVSRGMWATEARALCPELLLARVPEARGKADLTRYREASAEVMEVLSRFAA-IERAS 113
Query: 1732 LY 1733
++
Sbjct: 114 IF 115
Score = 39 (18.8 bits), Expect = 3.6e-14, Sum P(4) = 3.6e-14
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 2203 EHQSKTLATIDTFFTNKGKPPDQLNNPRPGPSNSTI-TPGPSNSTLPPGPS 2252
EH+ K I++FF + P P+ + +P S+ P G S
Sbjct: 465 EHRQKPANAIESFFQKVAERQQSQAVPSGLPAATHAHSPAASSMEHPEGDS 515
>ZFIN|ZDB-GENE-050417-376 [details] [associations]
symbol:poli "polymerase (DNA directed) iota"
species:7955 "Danio rerio" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 ZFIN:ZDB-GENE-050417-376
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100
SUPFAM:SSF100879 CTD:11201 HOVERGEN:HBG053634 KO:K03510
EMBL:BC092781 IPI:IPI00481247 RefSeq:NP_001017834.1
UniGene:Dr.78857 ProteinModelPortal:Q568P0 SMR:Q568P0 GeneID:550532
KEGG:dre:550532 InParanoid:Q568P0 NextBio:20879773 Uniprot:Q568P0
Length = 710
Score = 156 (60.0 bits), Expect = 3.8e-14, Sum P(4) = 3.8e-14
Identities = 52/172 (30%), Positives = 79/172 (45%)
Query: 1926 ASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIP-LSDL 1984
A+ +R+ I G T G SNKL A+L + KPN Q L P ++ M ++ L +
Sbjct: 185 AAEMRQAIFSTLGLTGCAGVASNKLLAKLVSGSFKPNQQTTLLPHSNAELMSSLTGLIKV 244
Query: 1985 PGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQR 2044
PG+G+ KL +LG DLQ L L E G N + G DD +T
Sbjct: 245 PGIGYKTREKLKALGLVNVRDLQLYPLSDLVKEFGEMNAKRVQNLACGIDDSPVTPAGPP 304
Query: 2045 KSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCI-TLKLMVR 2095
+S+S E + F+ +E LK++ + E + G+ TL+L +R
Sbjct: 305 QSLSDEDS----FKKMSTLEEVLKKIEELLINLTERMHKDGRQPHTLRLTIR 352
Score = 87 (35.7 bits), Expect = 3.8e-14, Sum P(4) = 3.8e-14
Identities = 27/90 (30%), Positives = 47/90 (52%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVP-YDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNES 1737
RE G+ M V A++KCP L +V D Y+E+SY + L+ S +E + +E+
Sbjct: 80 RELGVNKLMSVTDAVEKCPQLVLVKGEDLTHYREMSYKVTELLMSYCPLVERLGF--DEN 137
Query: 1738 FLNA---LPEDIRQEVLDDLSRQQSVLSRE 1764
F++ + + I++ + DLS V + E
Sbjct: 138 FMDVTEMVEKRIKETRISDLSFNGHVYNHE 167
Score = 80 (33.2 bits), Expect = 3.8e-14, Sum P(4) = 3.8e-14
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 1587 WKTSLGITEDEDLEETFSDNPSPS-EPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
W+ SL E + LE S S + VI+H D+DCF+ V + +P L+ +P+ +
Sbjct: 12 WERSL---ESDILETEGSSTDRVSLTSQRVILHFDLDCFYAQVEMIRNPALRTKPLGI 66
Score = 51 (23.0 bits), Expect = 3.8e-14, Sum P(4) = 3.8e-14
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 2173 QILKEVLFIVNKLKVDPVE---LRGIGIQVSKLEHQSKTLATIDTFFTNKGKPPDQL 2226
Q+L + + +K+ VDP + L + + S L+ +S + ++I +FFT+K Q+
Sbjct: 388 QLLSLSMKLFHKM-VDPHQPFHLTLLNVCFSNLQAKSSSKSSIASFFTHKSPSTTQI 443
Score = 41 (19.5 bits), Expect = 2.8e-10, Sum P(4) = 2.8e-10
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVV 493
ED ND + S++ ++ TEG S ++++ V+
Sbjct: 7 EDNND--WERSLESDILETEGSSTDRVSLTSQRVI 39
>UNIPROTKB|Q89W70 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:224911
"Bradyrhizobium japonicum USDA 110" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265 EMBL:BA000040
GenomeReviews:BA000040_GR GO:GO:0003918 SUPFAM:SSF56719
HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939 HSSP:P06982
RefSeq:NP_767463.1 ProteinModelPortal:Q89W70 SMR:Q89W70
GeneID:1047796 KEGG:bja:bll0823 PATRIC:21185152
BioCyc:BJAP224911:GJEJ-831-MONOMER Uniprot:Q89W70
Length = 811
Score = 183 (69.5 bits), Expect = 4.4e-14, Sum P(4) = 4.4e-14
Identities = 51/185 (27%), Positives = 89/185 (48%)
Query: 436 DSQTKENMTLQKGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVG 494
++ K +K + +P KL D + K+ L + EGDSA A G
Sbjct: 398 EAARKARELTRKSPLSVSSLPGKLADCQE---KDPAKSELFIVEGDSAGGSAKQGRN--- 451
Query: 495 RDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLM 554
R+ V PLRGK+LNV ++L + +I L+ LG S +++ ++ LRY +++
Sbjct: 452 REFQAVLPLRGKILNVERVRPDKMLGSEQIGTLITALGTGISDEFS----IEKLRYHKII 507
Query: 555 IMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEE 614
+MTD D DG+HI+ L++ F + ++ +L P+ K ++ + E E+
Sbjct: 508 VMTDADVDGAHIRTLLLTFFYRQMRDIIDGGYLYIAQPPLYKVSRGKSEQYLKDERALED 567
Query: 615 WKEET 619
+ ET
Sbjct: 568 YLIET 572
Score = 85 (35.0 bits), Expect = 4.4e-14, Sum P(4) = 4.4e-14
Identities = 22/81 (27%), Positives = 41/81 (50%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GL+ + E++ NA D + + +N + N+++V ++G+GIPV HK E +
Sbjct: 50 GLHHMVYEVVDNAIDEALAGHATR-VDVVLNAD-NSVTVRDDGRGIPVDIHKGEGISAAE 107
Query: 143 MIFGHLLTSSNYNDEEDKVTG 163
+I L ++ KV+G
Sbjct: 108 VIMTQLHAGGKFDQNSYKVSG 128
Score = 70 (29.7 bits), Expect = 4.4e-14, Sum P(4) = 4.4e-14
Identities = 45/198 (22%), Positives = 78/198 (39%)
Query: 168 MIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMS 227
+I L ++ KV+GG +G G + N SSK + + + D ++
Sbjct: 108 VIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVA 167
Query: 228 KVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNG 287
+ G + T++TF FK +++ D L R + A V + L+
Sbjct: 168 PLVVVGDAPGKRG--TEVTFLASPDTFK--NIEYDFATL-EHRLRELAFLNSGVNIALSD 222
Query: 288 -----EKLPVKNF----QDYVKLYTDRQDEDGDPVKIIYE-NVNPRW-EVAIAPSDRGFQ 336
EK ++ +++VK Y DR + P I+ N E A+ +D +
Sbjct: 223 MRHAVEKREEMHYSGGVEEFVK-YLDRNKKAIVPAPIMVRAEANGIGVEAALWWNDSYHE 281
Query: 337 QV-SFVNSIATTKGGRHV 353
V F N+I GG H+
Sbjct: 282 NVLCFTNNIPQRDGGTHL 299
Score = 37 (18.1 bits), Expect = 4.4e-14, Sum P(4) = 4.4e-14
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 430 IVNPTFDSQTKENM 443
+ +P F SQTK+ +
Sbjct: 342 VPDPKFSSQTKDKL 355
>UNIPROTKB|E2RAS5 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 GO:GO:0005634 GO:GO:0003684
GO:GO:0003887 GO:GO:0006297 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
OMA:TCTELYQ EMBL:AAEX03002157 Ensembl:ENSCAFT00000014935
Uniprot:E2RAS5
Length = 871
Score = 174 (66.3 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 50/180 (27%), Positives = 88/180 (48%)
Query: 1929 LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTP--QIISDFMLNIPLSDLPG 1986
+R I ++T T S G N + A++ + K KPNGQ+ + P Q + DF+ ++P+ + G
Sbjct: 305 IRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQVLPNRQAVMDFIKDLPIRKVSG 364
Query: 1987 VGHSLLFKLNSLGAQTCGDL--QNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQR 2044
+G L +LG TC +L Q L L +E + L + G + + +R
Sbjct: 365 IGKVTEKMLKALGIITCTELYQQRALLSLLFSETSWHHFLHISLGL-GSTHLASSRDGER 423
Query: 2045 KSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREAS 2104
KS+S E + +E ++L E+ + L++ +KG+ +T+KL + E AS
Sbjct: 424 KSMSVERTFS-EISKAEEQYNLCQELCSELAQDLQKEGLKGRTVTIKLKNVNFEVKTRAS 482
Score = 106 (42.4 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 36/112 (32%), Positives = 62/112 (55%)
Query: 1540 NEDFLG-EFYNKSRLHHL---STMGSMFKQYVNELREKHDGVFRGIEAIRKWK---TSLG 1592
N++ G E +K +++ + +T GS F Y NEL+ K V + IE + + K TS
Sbjct: 30 NDNKAGMEGLDKDKINKIIMEATKGSRF--YGNELK-KEKQVNQRIENMMQQKAQITSQQ 86
Query: 1593 ITEDEDLEETFSDNPSPSEP-EPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
+ + + + ++ S I+HIDMD F+ +V +R +PEL+D+P+AV
Sbjct: 87 LRKAQLQVDRYAMELEQSRDLNNTIVHIDMDAFYAAVEMRDNPELKDKPIAV 138
Score = 89 (36.4 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 70/334 (20%), Positives = 138/334 (41%)
Query: 1679 REYGLGNGMFVGHALKK-CPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNES 1737
R +G+ M G K+ CP L IVP +F+ Y+ VS + ++A N A+SL +E+
Sbjct: 152 RRFGVRAAM-PGFIAKRLCPQLIIVPPNFDKYRAVSTEVKEILADYDPNFLAMSL--DEA 208
Query: 1738 FLNALPE-DIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTL-VRTPSPSPIL-D 1794
+LN RQ +D R+ + T PL D + + L S SP+L D
Sbjct: 209 YLNITKHLQERQNWPED-KRKYFI-----KTGNPLENDKPRKEVNKLREHERSISPLLFD 262
Query: 1795 MSTSILDTTTSHILSSNVSLQEMRTMLREWMCESQPEP--SDIEMFSEYLSNLVEERHLN 1852
S L + + + ++ +T+ + + E +I E + L +
Sbjct: 263 DSPPDLQSQGNPLQGNSEEEDNPQTLQNSIVFGTSAEEVVKEIRFRIEQKTTLTASAGIA 322
Query: 1853 PIVILLRFLR-RHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDC 1911
P +L + ++ + V Q ++ ++ K S K+ + + C
Sbjct: 323 PNTMLAKVCSDKNKPNGQYQVLPNR-QAVMDFIKDLPIRKVSGIGKVTEKMLKALGIITC 381
Query: 1912 SQLLQELSLTPLQFAS-----YLRETIAKETGCTCSTGFGSNKLQA--RLATKKAKPNGQ 1964
++L Q+ +L L F+ +L ++ + S+ G K + R ++ +K Q
Sbjct: 382 TELYQQRALLSLLFSETSWHHFLHISLGLGSTHLASSRDGERKSMSVERTFSEISKAEEQ 441
Query: 1965 FHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSL 1998
++L ++ S+ ++ L G ++ KL ++
Sbjct: 442 YNLCQELCSELAQDLQKEGLKG--RTVTIKLKNV 473
Score = 43 (20.2 bits), Expect = 4.3e-06, Sum P(4) = 4.3e-06
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 808 FHDNELAKPQKTGPQLERQERQAAE 832
F+ NEL K ++ ++E +Q A+
Sbjct: 57 FYGNELKKEKQVNQRIENMMQQKAQ 81
Score = 42 (19.8 bits), Expect = 4.3e-06, Sum P(4) = 4.3e-06
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 231 SPEIKSGS-KDDFTKITFTPDLTKFKMTSLDKDMVDLITRRA 271
S + K+GS KDD D K M LDKD ++ I A
Sbjct: 11 STKEKNGSYKDDLLLRMGLND-NKAGMEGLDKDKINKIIMEA 51
Score = 37 (18.1 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 1666 YRQRTMNRMGLNTREYGL 1683
Y+ + RMGLN + G+
Sbjct: 19 YKDDLLLRMGLNDNKAGM 36
Score = 37 (18.1 bits), Expect = 4.3e-06, Sum P(4) = 4.3e-06
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 1393 RTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDS 1425
+T + + ++ P ++ KL+ ++ I P DS
Sbjct: 232 KTGNPLENDKPRKEVNKLREHERSISPLLFDDS 264
>UNIPROTKB|F1NAG6 [details] [associations]
symbol:POLH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006290 "pyrimidine dimer repair" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0010225 "response to
UV-C" evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
Gene3D:3.30.1490.100 SUPFAM:SSF100879 OMA:SPPLTML
InterPro:IPR017061 PIRSF:PIRSF036603 GeneTree:ENSGT00530000062942
EMBL:AADN02011866 EMBL:AADN02011865 IPI:IPI00596429
Ensembl:ENSGALT00000016798 ArrayExpress:F1NAG6 Uniprot:F1NAG6
Length = 686
Score = 206 (77.6 bits), Expect = 4.8e-14, Sum P(4) = 4.8e-14
Identities = 58/199 (29%), Positives = 99/199 (49%)
Query: 1899 VSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKK 1958
++++S D V+C L +L++ + +R + K TG CS G NK+ A+LA
Sbjct: 166 LASLSFDN--VNCPDL--QLAMGAV-IVEEIRVAVEKATGFRCSAGISHNKMLAKLACGL 220
Query: 1959 AKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNS-LGAQTCGDLQNISLKRLQNE 2017
KPN Q ++ + + +P+S + +G L + LG + G++ S LQ
Sbjct: 221 NKPNRQTLVSSRSVPQLFSQMPVSSIRNLGGKLGVAITDILGVEYIGEVTKFSEMELQTH 280
Query: 2018 VGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNY-G-IRFQNNQEMETFLKQLAGEVE 2075
G+K G LY CRG DD+ + H +S+ N+ G +E++ +L QLA E+E
Sbjct: 281 FGDKTGSWLYDLCRGIDDEPVKNRHLPQSIGCSKNFPGKTALATQKEVQHWLLQLALELE 340
Query: 2076 KRLEEVKMKGKCITLKLMV 2094
RL + + + + +LMV
Sbjct: 341 SRLIKDRSQNHRVAKQLMV 359
Score = 75 (31.5 bits), Expect = 4.8e-14, Sum P(4) = 4.8e-14
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 1613 EPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
E V+ +DMDCFF+ V R P L+ P AV
Sbjct: 6 ERVVALVDMDCFFMQVEQRFDPRLRGRPCAV 36
Score = 49 (22.3 bits), Expect = 4.8e-14, Sum P(4) = 4.8e-14
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKI--VPY-----DFEGYKEVSYCLYNLIASLTLNIEAVS 1731
R +G+ GM+ A CP L + VP D Y+E S + +++ IE S
Sbjct: 55 RAFGVSRGMWATEARALCPELLLARVPEARGKADLTRYREASAEVMEVLSRFAA-IERAS 113
Query: 1732 LY 1733
++
Sbjct: 114 IF 115
Score = 39 (18.8 bits), Expect = 4.8e-14, Sum P(4) = 4.8e-14
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 2203 EHQSKTLATIDTFFTNKGKPPDQLNNPRPGPSNSTI-TPGPSNSTLPPGPS 2252
EH+ K I++FF + P P+ + +P S+ P G S
Sbjct: 465 EHRQKPANAIESFFQKVAERQQSQAVPSGLPAATHAHSPAASSMEHPEGDS 515
>TIGR_CMR|SO_0011 [details] [associations]
symbol:SO_0011 "DNA gyrase, B subunit" species:211586
"Shewanella oneidensis MR-1" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898 InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0006261 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 HSSP:P06982 RefSeq:NP_715653.1
ProteinModelPortal:Q8EKS9 SMR:Q8EKS9 GeneID:1167909
KEGG:son:SO_0011 PATRIC:23519713 Uniprot:Q8EKS9
Length = 805
Score = 189 (71.6 bits), Expect = 5.1e-14, Sum P(3) = 5.1e-14
Identities = 52/162 (32%), Positives = 80/162 (49%)
Query: 443 MTLQKGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVF 501
MT +KG+ +P KL D + S + + EGDSA A G R +
Sbjct: 392 MTRRKGALDLGGLPGKLADCQEKDPGLS---EIYIVEGDSAGGSAKQGRN---RKNQAIL 445
Query: 502 PLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQ 561
PL+GK+LNV +A ++L + E+ L+ LG + + KT RY ++IMTD D
Sbjct: 446 PLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPD--KT-RYHNIIIMTDADV 502
Query: 562 DGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREE 603
DGSHI+ L++ F P L+ ++ P+ K K ++E
Sbjct: 503 DGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLFKVKKGKQE 544
Score = 98 (39.6 bits), Expect = 5.1e-14, Sum P(3) = 5.1e-14
Identities = 48/208 (23%), Positives = 84/208 (40%)
Query: 157 EEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKK 216
EE+ V+ M H ++D KV+GG +G G + N S K ++ + K
Sbjct: 85 EEEGVSAAEVIMTVLH--AGGKFDDNSYKVSGGLHGVGVSVVNALSKK--LQLTIRRDGK 140
Query: 217 SFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAA 276
+Q + + EI +K T+I F P F +++ +R + +
Sbjct: 141 VHEQFYTHGVPDAPIKEIGDATKTG-TEIRFWPSEQTFSNVEFH---FEILAKRVRELSF 196
Query: 277 STKDVKVFLNGEKLPVKNFQDY---VKLYTDRQDEDGDPV-KIIYENVNPR-----WEVA 327
V + L E+ F Y + + D + + PV K ++ + R EVA
Sbjct: 197 LNSGVGIRLVDERDNKNEFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQERDDGITVEVA 256
Query: 328 IAPSDRGFQQ--VSFVNSIATTKGGRHV 353
+ +D G+Q+ F N+I GG H+
Sbjct: 257 MQWND-GYQENIFCFTNNIPQRDGGTHL 283
Score = 87 (35.7 bits), Expect = 6.6e-13, Sum P(3) = 6.6e-13
Identities = 23/82 (28%), Positives = 43/82 (52%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN-TISVWNNGKGIPVVEHKDEKMFVP 141
GL+ + E++ N+ D +C IT+ + ++SV ++G+GIPV H++E +
Sbjct: 36 GLHHMVFEVVDNSIDEALAG---HCTDITITIHVDGSVSVKDDGRGIPVSIHEEEGVSAA 92
Query: 142 TMIFGHLLTSSNYNDEEDKVTG 163
+I L ++D KV+G
Sbjct: 93 EVIMTVLHAGGKFDDNSYKVSG 114
Score = 42 (19.8 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 119 ISVWNNGKGIPVVEHKDEK 137
+S N+G GI +V+ +D K
Sbjct: 194 LSFLNSGVGIRLVDERDNK 212
Score = 41 (19.5 bits), Expect = 5.1e-14, Sum P(3) = 5.1e-14
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 708 DPLPMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDD-KLEITELQVGK 754
D MK W F E+ +S + +GE +LD + K+ + ++ + K
Sbjct: 623 DEAKMKEWIDAFIHELVELENSGVLYSGE-PVLDPERKVYLPKITIRK 669
Score = 38 (18.4 bits), Expect = 1.0e-13, Sum P(3) = 1.0e-13
Identities = 21/75 (28%), Positives = 29/75 (38%)
Query: 1371 SAEELKALMMLHG---GIYHHYESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSIS 1427
S E L+ L+ + I E THI L H I D+ EWI I
Sbjct: 577 SGEPLERLVTQYREVEAIVARLEQRYPTHITNRMLYHPMISNDMLADEAKMKEWIDAFIH 636
Query: 1428 AGKLLDHKKYLLYTG 1442
L++ +LY+G
Sbjct: 637 ELVELENSG-VLYSG 650
>UNIPROTKB|F1MHR0 [details] [associations]
symbol:POLI "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
Gene3D:3.30.1490.100 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
OMA:VFYELPE EMBL:DAAA02057088 IPI:IPI00687719
Ensembl:ENSBTAT00000012034 Uniprot:F1MHR0
Length = 701
Score = 176 (67.0 bits), Expect = 6.7e-14, Sum P(4) = 6.7e-14
Identities = 62/235 (26%), Positives = 111/235 (47%)
Query: 1865 VGKKESTVWAEAYQEMLSCVQSAMKHKPSSE-SKI-VSAVSCDEMYVDCSQLLQELSLTP 1922
V ++ T + E ++ V+ ++ S E S + VS + V+ L L
Sbjct: 106 VNGEDLTRYREMSYKVTEMVEKRLEQLQSDELSALTVSGHVYNNQPVNPRDTLHIRLLVG 165
Query: 1923 LQFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIP-L 1981
Q + +RE + ++ G T G SNKL A+L + KPN Q L P+ + + ++ +
Sbjct: 166 SQIVAEMREAMYQQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQELIHSLNHI 225
Query: 1982 SDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFE 2041
++PG+G+ +L +LG + DLQ K L+ E+G + K GEDD +T
Sbjct: 226 KEMPGIGYKTTKRLEALGISSVRDLQTFPSKVLEKELGISVAQRIQKLSFGEDDSPVTPS 285
Query: 2042 HQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKG-KCITLKLMVR 2095
+S S E ++ + + E +T +++L + L V G K T++L++R
Sbjct: 286 GPPQSFSEEDSFK-KCSSEVEAKTKIEELLASL---LNRVCQDGRKPHTIRLIIR 336
Score = 98 (39.6 bits), Expect = 6.7e-14, Sum P(4) = 6.7e-14
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 1587 WKTSLGITEDEDLEETFSD-NPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
W +L E +DL + P+ S VI+H+D+DCF+ V + +PEL+D+P+ V
Sbjct: 12 WPGALEPDELDDLPWLHDELEPAGSSSCRVIVHVDLDCFYAQVEMISNPELKDKPLGV 69
Score = 59 (25.8 bits), Expect = 6.7e-14, Sum P(4) = 6.7e-14
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVP-YDFEGYKEVSYCLYNLI 1720
R+ G+ M V A +KCP L +V D Y+E+SY + ++
Sbjct: 83 RKLGVKKLMSVRDAKEKCPQLVLVNGEDLTRYREMSYKVTEMV 125
Score = 37 (18.1 bits), Expect = 6.7e-14, Sum P(4) = 6.7e-14
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 2217 TNKGK-PPDQLNNPRPGPSN 2235
T G+ PPD +N+ + SN
Sbjct: 461 TRTGESPPDPINSSKEKDSN 480
>TIGR_CMR|NSE_0721 [details] [associations]
symbol:NSE_0721 "DNA gyrase, B subunit" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:YP_506597.1 ProteinModelPortal:Q2GD49
SMR:Q2GD49 STRING:Q2GD49 GeneID:3932056 KEGG:nse:NSE_0721
PATRIC:22681457 BioCyc:NSEN222891:GHFU-733-MONOMER Uniprot:Q2GD49
Length = 783
Score = 196 (74.1 bits), Expect = 6.9e-14, Sum P(5) = 6.9e-14
Identities = 53/175 (30%), Positives = 87/175 (49%)
Query: 442 NMTLQKGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGV 500
++T +KG T +P KL D + + S L++ EGDSA A G R V
Sbjct: 394 DLTRRKGGLEITTLPGKLADCQEKSPELS---ELLIVEGDSAGGSAKQGRD---RKTQAV 447
Query: 501 FPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQD 560
PLRGK+LNV + +++ +AEI NL+ LG ++ ++ +RY +++IMTD D
Sbjct: 448 LPLRGKILNVEKTRFHKVIGSAEIGNLIAALGTSIGEEEFNIDK---IRYHKIIIMTDAD 504
Query: 561 QDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEW 615
DG HI+ L++ F ++ +L TP+ K + ++ EE+
Sbjct: 505 VDGLHIRTLLLTFFFRYARPIVERGYLYIAQTPLYKVMRKGADVYLRDDAALEEY 559
Score = 68 (29.0 bits), Expect = 6.9e-14, Sum P(5) = 6.9e-14
Identities = 20/81 (24%), Positives = 40/81 (49%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GL+++ E++ N+ D I++ ++ + +ISV +NG+G+P H E +
Sbjct: 36 GLHQMVYEVVDNSVDESLAG-YCTAIEVVIDVD-GSISVEDNGRGMPTDMH-GEGVSAAE 92
Query: 143 MIFGHLLTSSNYNDEEDKVTG 163
+I L ++ KV+G
Sbjct: 93 VIMTQLHAGGKFDQSSYKVSG 113
Score = 66 (28.3 bits), Expect = 6.9e-14, Sum P(5) = 6.9e-14
Identities = 42/205 (20%), Positives = 82/205 (40%)
Query: 168 MIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMS 227
+I L ++ KV+GG +G G + N S ++ T + K F +
Sbjct: 93 VIMTQLHAGGKFDQSSYKVSGGLHGVGVSVVNALSD-WLKLTIYRDGKVHFAEFENGETV 151
Query: 228 KVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFL-- 285
+ S + G K T + F P + FK T+ + + R + + +++ L
Sbjct: 152 RSLSVTGECGDKTG-TLVHFLPSRSTFKNTT--EVSFSTLENRFRELSFLNPGLRISLLD 208
Query: 286 --NGEKLPVKNF------QDYVKLYTDRQDED--GDPVKIIYENVNPRWEVAIAPSDRGF 335
G F +++V Y DR + P++++ + +V++ +D +
Sbjct: 209 MRKGSSTGKVVFFSSGGTEEFVA-YLDRSKQPIHSTPIRVVGGVDSIAIDVSMQWNDSYY 267
Query: 336 QQV-SFVNSIATTKGGRHVDAVVDA 359
+ V F N+I GG H+ A+ A
Sbjct: 268 ENVLCFTNNIKQKDGGTHLAALRSA 292
Score = 43 (20.2 bits), Expect = 6.9e-14, Sum P(5) = 6.9e-14
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 1420 EWIVDSISAGKLLDHKKYLLYTGTDAK 1446
E+++D I GK L+ +YTG K
Sbjct: 558 EYLLDRIVKGKELEGANGNVYTGQSLK 584
Score = 41 (19.5 bits), Expect = 6.9e-14, Sum P(5) = 6.9e-14
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 418 VKNHIWIFINCLIVNPTFDSQTKENM 443
V+ + ++ + +P F SQTKE +
Sbjct: 319 VREGLSAILSVKLPDPKFSSQTKEKL 344
>UNIPROTKB|E2RC81 [details] [associations]
symbol:POLH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0006301 "postreplication repair" evidence=IEA] [GO:0006290
"pyrimidine dimer repair" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005634 GO:GO:0005737 GO:GO:0003684
GO:GO:0010225 GO:GO:0000731 GO:GO:0006301 GO:GO:0003887
GO:GO:0006290 Gene3D:3.30.1490.100 SUPFAM:SSF100879 KO:K03509
CTD:5429 OMA:SPPLTML InterPro:IPR017061 PIRSF:PIRSF036603
GeneTree:ENSGT00530000062942 EMBL:AAEX03008345 RefSeq:XP_532150.2
Ensembl:ENSCAFT00000003028 GeneID:474915 KEGG:cfa:474915
NextBio:20850851 Uniprot:E2RC81
Length = 712
Score = 188 (71.2 bits), Expect = 7.7e-14, Sum P(3) = 7.7e-14
Identities = 54/194 (27%), Positives = 91/194 (46%)
Query: 1905 DEMYVDCSQLLQELSLTP-LQFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNG 1963
D + +D + +L LT +R I +ETG CS G NK+ A+LA KPN
Sbjct: 176 DSLQID-NNTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNR 234
Query: 1964 QFHLTPQIISDFMLNIPLSDLPGVGHSL-LFKLNSLGAQTCGDLQNISLKRLQNEVGNKN 2022
Q ++ + +P+S + +G L + LG + G+L + +LQ+ G KN
Sbjct: 235 QTLVSHGSVPQLFSQMPISKIRSLGGKLGASVIEILGVEYMGELTQFTESQLQSHFGEKN 294
Query: 2023 GLTLYKHCRGEDDKELTFEHQRKSVSAEVNY-G-IRFQNNQEMETFLKQLAGEVEKRLEE 2080
G LY CRG + + K++ N+ G ++++ +L QLA E+E+RL +
Sbjct: 295 GSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALTTREQVQWWLLQLAQELEERLTK 354
Query: 2081 VKMKGKCITLKLMV 2094
+ + +L V
Sbjct: 355 DRNDNDRVATQLAV 368
Score = 83 (34.3 bits), Expect = 7.7e-14, Sum P(3) = 7.7e-14
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 1615 VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGK 1647
V+ +DMDCFFV V R +P L+++P AV K
Sbjct: 8 VVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYK 40
Score = 53 (23.7 bits), Expect = 7.7e-14, Sum P(3) = 7.7e-14
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 1856 ILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLL 1915
+LL +R GK T + EA E++ + S ++ S DE Y+D + +
Sbjct: 75 LLLAQVRESRGKANLTKYREASVEVMGIL---------SRFAVIERASIDEAYIDLTSAV 125
Query: 1916 QE 1917
QE
Sbjct: 126 QE 127
Score = 49 (22.3 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 38/158 (24%), Positives = 65/158 (41%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPY-DFEG------YKEVSYCLYNLIASLTLNIEAVS 1731
R +G+ M+ A K CP+L + + G Y+E S + +++ + IE S
Sbjct: 55 RAFGVTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMGILSRFAV-IERAS 113
Query: 1732 LYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNT-TEPLAQDIICADSHTLVRTPSPS 1790
+ +E++++ L + QE L +L Q T E L Q A+
Sbjct: 114 I--DEAYID-LTSAV-QERLQNLQGQPISADLLPTTYIEGLPQGPTTAEGTDQKEETRKQ 169
Query: 1791 PILDMSTSI-LDTTTSHILSSNVS---LQEMRTML-RE 1823
+ S+ +D TS L V ++EMR + RE
Sbjct: 170 GLFQWLDSLQIDNNTSPDLQLTVGAVIVEEMRAAIERE 207
Score = 37 (18.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 1634 PELQDEPVAVAHGKGNSSKVRE 1655
P+L V + GK N +K RE
Sbjct: 73 PDLLLAQVRESRGKANLTKYRE 94
>UNIPROTKB|P63985 [details] [associations]
symbol:dinB1 "DNA polymerase IV 1" species:1773
"Mycobacterium tuberculosis" [GO:0005829 "cytosol" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005829 GO:GO:0005886 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 EMBL:BX842577 GO:GO:0003887 PIR:F70760
RefSeq:NP_216053.2 RefSeq:NP_336041.2 RefSeq:YP_006514925.1
ProteinModelPortal:P63985 SMR:P63985
EnsemblBacteria:EBMYCT00000000713 EnsemblBacteria:EBMYCT00000071148
GeneID:13320135 GeneID:886414 GeneID:924358 KEGG:mtc:MT1589
KEGG:mtu:Rv1537 KEGG:mtv:RVBD_1537 PATRIC:18125261
TubercuList:Rv1537 eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346
OMA:LKKADMS ProtClustDB:PRK03348 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 Uniprot:P63985
Length = 468
Score = 194 (73.4 bits), Expect = 7.8e-14, Sum P(3) = 7.8e-14
Identities = 55/196 (28%), Positives = 92/196 (46%)
Query: 1898 IVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATK 1957
+V +S DE + + QL ++ F LR + ETG S G GS K A++A+
Sbjct: 98 VVEQLSFDEAFAEPPQLAGAVAEDVETFCERLRRRVRDETGLIASVGAGSGKQIAKIASG 157
Query: 1958 KAKPNGQFHLTPQIISDFMLN-IPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQN 2016
AKP+G + +L+ +P+ L G+G KL+ LG +T G L +S N
Sbjct: 158 LAKPDG-IRVVRHAEEQALLSGLPVRRLWGIGPVAEEKLHRLGIETIGQLAALSDAEAAN 216
Query: 2017 EVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEK 2076
+G G L++ RG DD+ + + K +SAE + + +++ + +A +
Sbjct: 217 ILGATIGPALHRLARGIDDRPVVERAEAKQISAESTFAVDLTTMEQLHEAIDSIAEHAHQ 276
Query: 2077 RLEEVKMKGKCITLKL 2092
RL + IT+KL
Sbjct: 277 RLLRDGRGARTITVKL 292
Score = 69 (29.3 bits), Expect = 7.8e-14, Sum P(3) = 7.8e-14
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 1616 IMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKV 1653
++H+DMD FF SV P L+ PV V G G V
Sbjct: 6 VLHLDMDAFFASVEQLTRPTLRGRPVLVG-GLGGRGVV 42
Score = 51 (23.0 bits), Expect = 7.8e-14, Sum P(3) = 7.8e-14
Identities = 15/73 (20%), Positives = 34/73 (46%)
Query: 2136 LVRSAEAPREASKFLGHGVCDYITKSSSLPMYISQASQILKEVLFIV-NKLKVDPVELRG 2194
L+R R + L +T+S+++P + A + ++ + L++ P+ L G
Sbjct: 278 LLRDGRGARTITVKLKKSDMSTLTRSATMPYPTTDAGALFTVARRLLPDPLQIGPIRLLG 337
Query: 2195 IGIQ-VSKLEHQS 2206
+G +S + +S
Sbjct: 338 VGFSGLSDIRQES 350
>RGD|1309893 [details] [associations]
symbol:Polh "polymerase (DNA directed), eta" species:10116
"Rattus norvegicus" [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006290 "pyrimidine dimer repair"
evidence=IEA;ISO] [GO:0006301 "postreplication repair"
evidence=IEA;ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0010225 "response to UV-C" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
RGD:1309893 GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
EMBL:CH473987 Gene3D:3.30.1490.100 SUPFAM:SSF100879 KO:K03509
CTD:5429 OMA:SPPLTML OrthoDB:EOG4RBQJ8 InterPro:IPR017061
PIRSF:PIRSF036603 GeneTree:ENSGT00530000062942 IPI:IPI00194322
RefSeq:NP_001101674.1 UniGene:Rn.53711 Ensembl:ENSRNOT00000026049
GeneID:316235 KEGG:rno:316235 UCSC:RGD:1309893 NextBio:670614
Uniprot:D4ADZ0
Length = 689
Score = 182 (69.1 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 48/169 (28%), Positives = 84/169 (49%)
Query: 1929 LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVG 1988
+R I ++TG CS G NK+ A+LA KPN Q ++ + +P+ + +G
Sbjct: 199 MRAAIERKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLG 258
Query: 1989 HSL-LFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSV 2047
L ++ LG + GDL + +LQ+ G KNG LY CRG + + + K++
Sbjct: 259 GKLGASVIDVLGVEYMGDLTQFTEAQLQSHFGEKNGSWLYAMCRGIEHEPVKPRQLPKTI 318
Query: 2048 SAEVNY-G-IRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMV 2094
N+ G ++++ +L QLA E+E+RL + + + +L+V
Sbjct: 319 GCSKNFPGKTALATREQVQWWLLQLALELEERLTKDRTDNGRVATQLVV 367
Score = 83 (34.3 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 1615 VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGK 1647
V+ +DMDCFFV V R +P L+++P AV K
Sbjct: 8 VVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYK 40
Score = 56 (24.8 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 22/69 (31%), Positives = 30/69 (43%)
Query: 1856 ILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLL 1915
+LL +R GK T + EA E V M H ++ S DE Y+D + +
Sbjct: 75 LLLAQVRESRGKANLTKYREASVE----VMEIMSH-----FAVIERASIDEAYIDLTNAV 125
Query: 1916 QELSLTPLQ 1924
QE L LQ
Sbjct: 126 QE-RLEKLQ 133
Score = 47 (21.6 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 22/86 (25%), Positives = 42/86 (48%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPY-DFEG------YKEVSYCLYNLIASLTLNIEAVS 1731
R +G+ M+ A K CP+L + + G Y+E S + +++ + IE S
Sbjct: 55 RAFGVTRNMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSHFAV-IERAS 113
Query: 1732 LYTNESFLNALPEDIRQEVLDDLSRQ 1757
+ +E++++ L + QE L+ L Q
Sbjct: 114 I--DEAYID-LTNAV-QERLEKLQGQ 135
Score = 37 (18.1 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 1634 PELQDEPVAVAHGKGNSSKVRE 1655
P+L V + GK N +K RE
Sbjct: 73 PDLLLAQVRESRGKANLTKYRE 94
>UNIPROTKB|Q5Q9G7 [details] [associations]
symbol:POLK "DNA polymerase kappa" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 EMBL:AC010245
EMBL:AC116341 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082711
UniGene:Hs.732105 HGNC:HGNC:9183 EMBL:AC026424 HOVERGEN:HBG056846
EMBL:AY769930 IPI:IPI00965083 SMR:Q5Q9G7 STRING:Q5Q9G7
Ensembl:ENST00000509126 Uniprot:Q5Q9G7
Length = 489
Score = 160 (61.4 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 42/159 (26%), Positives = 80/159 (50%)
Query: 1929 LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTP--QIISDFMLNIPLSDLPG 1986
+R I ++T T S G N + A++ + K KPNGQ+ + P Q + DF+ ++P+ + G
Sbjct: 297 IRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSG 356
Query: 1987 VGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCR-GEDDKELTFEHQRK 2045
+G L +LG TC +L + L + + ++ + H G LT + +RK
Sbjct: 357 IGKVTEKMLKALGIITCTELYQ--QRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERK 414
Query: 2046 SVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMK 2084
S+S E + +E + ++L E+ + L++ ++K
Sbjct: 415 SMSVERTFS-EINKAEEQYSLCQELCSELAQDLQKERLK 452
Score = 108 (43.1 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 37/112 (33%), Positives = 62/112 (55%)
Query: 1540 NEDFLG-EFYNKSRLHHL---STMGSMFKQYVNELREKHDGVFRGIEAIRKWK---TSLG 1592
N++ G E +K +++ + +T GS F Y NEL+ K V + IE + + K TS
Sbjct: 22 NDNKAGMEGLDKEKINKIIMEATKGSRF--YGNELK-KEKQVNQRIENMMQQKAQITSQQ 78
Query: 1593 ITEDEDLEETFSDNPSPSEP-EPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
+ + + + F+ S I+HIDMD F+ +V +R +PEL+D+P+AV
Sbjct: 79 LRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAV 130
Score = 91 (37.1 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 74/353 (20%), Positives = 140/353 (39%)
Query: 1677 NTREYGLGNGMFVGHALKK-CPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTN 1735
+ R +G+ M G K+ CP L IVP +F+ Y+ VS + ++A N A+SL +
Sbjct: 142 HARRFGVRAAM-PGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSL--D 198
Query: 1736 ESFLNALPE-DIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPSPSPILD 1794
E++LN + RQ +D R + P +++ H R+ SP + +
Sbjct: 199 EAYLNITKHLEERQNWPEDKRRYFIKMGSSVENDNP-GKEVNKLSEHE--RSISPL-LFE 254
Query: 1795 MSTSILDTTTSHILSSNVSLQEMRTMLREWMC---ESQPEPSDIEMFSEYLSNLVEERHL 1851
S S + N Q +L+ + +Q +I E + L +
Sbjct: 255 ESPSDVQPPGDPF-QVNFEEQNNPQILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGI 313
Query: 1852 NPIVILLRFLR-RHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVD 1910
P +L + ++ + + Q ++ ++ K S K+ + +
Sbjct: 314 APNTMLAKVCSDKNKPNGQYQILPNR-QAVMDFIKDLPIRKVSGIGKVTEKMLKALGIIT 372
Query: 1911 CSQLLQELSLTPLQFAS----YLRETIAKETGCTCSTGFGSNKLQA--RLATKKAKPNGQ 1964
C++L Q+ +L L F+ Y I+ G T T G K + R ++ K Q
Sbjct: 373 CTELYQQRALLSLLFSETSWHYFLH-ISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQ 431
Query: 1965 FHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNE 2017
+ L ++ S+ ++ L G+ L+F + G G L ++ RL+ +
Sbjct: 432 YSLCQELCSELAQDLQKERLKVFGY-LVFPMKRTGNTNKGAL--LAFYRLETK 481
Score = 43 (20.2 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 808 FHDNELAKPQKTGPQLERQERQAAE 832
F+ NEL K ++ ++E +Q A+
Sbjct: 49 FYGNELKKEKQVNQRIENMMQQKAQ 73
Score = 41 (19.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 1664 DIYRQRTMNRMGLNTREYGL 1683
D Y+ + RMGLN + G+
Sbjct: 9 DSYKDDLLLRMGLNDNKAGM 28
>UNIPROTKB|Q9Y253 [details] [associations]
symbol:POLH "DNA polymerase eta" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006290 "pyrimidine dimer repair"
evidence=IEA] [GO:0006301 "postreplication repair" evidence=IEA]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=IDA]
[GO:0010225 "response to UV-C" evidence=IDA] [GO:0006282
"regulation of DNA repair" evidence=TAS] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_216
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005737
GO:GO:0005654 GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0010225 GO:GO:0000731 GO:GO:0006301 GO:GO:0006282
GO:GO:0003887 GO:GO:0006290 eggNOG:COG0389 Gene3D:3.30.1490.100
SUPFAM:SSF100879 CleanEx:HS_POLH KO:K03509 EMBL:AL353602
EMBL:AB024313 EMBL:AF158185 EMBL:AB038008 EMBL:AY388614
EMBL:AL355802 EMBL:BC015742 IPI:IPI00008011 IPI:IPI00552037
RefSeq:NP_006493.1 UniGene:Hs.655467 PDB:2I5O PDB:2LSK PDB:3MR2
PDB:3MR3 PDB:3MR5 PDB:3MR6 PDB:3SI8 PDB:3TQ1 PDB:4DL2 PDB:4DL3
PDB:4DL4 PDB:4DL5 PDB:4DL6 PDB:4DL7 PDB:4ECQ PDB:4ECR PDB:4ECS
PDB:4ECT PDB:4ECU PDB:4ECV PDB:4ECW PDB:4ECX PDB:4ECY PDB:4ECZ
PDB:4ED0 PDB:4ED1 PDB:4ED2 PDB:4ED3 PDB:4ED6 PDB:4ED7 PDB:4ED8
PDB:4EEY PDBsum:2I5O PDBsum:2LSK PDBsum:3MR2 PDBsum:3MR3
PDBsum:3MR5 PDBsum:3MR6 PDBsum:3SI8 PDBsum:3TQ1 PDBsum:4DL2
PDBsum:4DL3 PDBsum:4DL4 PDBsum:4DL5 PDBsum:4DL6 PDBsum:4DL7
PDBsum:4ECQ PDBsum:4ECR PDBsum:4ECS PDBsum:4ECT PDBsum:4ECU
PDBsum:4ECV PDBsum:4ECW PDBsum:4ECX PDBsum:4ECY PDBsum:4ECZ
PDBsum:4ED0 PDBsum:4ED1 PDBsum:4ED2 PDBsum:4ED3 PDBsum:4ED6
PDBsum:4ED7 PDBsum:4ED8 PDBsum:4EEY ProteinModelPortal:Q9Y253
SMR:Q9Y253 IntAct:Q9Y253 MINT:MINT-2789553 STRING:Q9Y253
PhosphoSite:Q9Y253 DMDM:59798441 PRIDE:Q9Y253
Ensembl:ENST00000372226 Ensembl:ENST00000372236 GeneID:5429
KEGG:hsa:5429 UCSC:uc003ovq.4 CTD:5429 GeneCards:GC06P043543
HGNC:HGNC:9181 HPA:HPA006721 HPA:HPA026762 MIM:278750 MIM:603968
neXtProt:NX_Q9Y253 Orphanet:90342 PharmGKB:PA279
HOGENOM:HOG000115605 HOVERGEN:HBG053633 InParanoid:Q9Y253
OMA:SPPLTML OrthoDB:EOG4RBQJ8 PhylomeDB:Q9Y253 SABIO-RK:Q9Y253
BindingDB:Q9Y253 ChEMBL:CHEMBL5542 EvolutionaryTrace:Q9Y253
GenomeRNAi:5429 NextBio:21005 ArrayExpress:Q9Y253 Bgee:Q9Y253
Genevestigator:Q9Y253 GermOnline:ENSG00000170734 InterPro:IPR017061
PIRSF:PIRSF036603 Uniprot:Q9Y253
Length = 713
Score = 182 (69.1 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 53/194 (27%), Positives = 91/194 (46%)
Query: 1905 DEMYVDCSQLLQELSLTP-LQFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNG 1963
D + +D + +L LT +R I +ETG CS G NK+ A+LA KPN
Sbjct: 176 DSLQID-NLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNR 234
Query: 1964 QFHLTPQIISDFMLNIPLSDLPGVGHSL-LFKLNSLGAQTCGDLQNISLKRLQNEVGNKN 2022
Q ++ + +P+ + +G L + LG + G+L + +LQ+ G KN
Sbjct: 235 QTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKN 294
Query: 2023 GLTLYKHCRGEDDKELTFEHQRKSVSAEVNY-G-IRFQNNQEMETFLKQLAGEVEKRLEE 2080
G LY CRG + + K++ N+ G ++++ +L QLA E+E+RL +
Sbjct: 295 GSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTK 354
Query: 2081 VKMKGKCITLKLMV 2094
+ + +L+V
Sbjct: 355 DRNDNDRVATQLVV 368
Score = 83 (34.3 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 1615 VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGK 1647
V+ +DMDCFFV V R +P L+++P AV K
Sbjct: 8 VVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYK 40
Score = 55 (24.4 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 21/69 (30%), Positives = 31/69 (44%)
Query: 1856 ILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLL 1915
+LL +R GK T + EA E++ + S ++ S DE YVD + +
Sbjct: 75 LLLAQVRESRGKANLTKYREASVEVMEIM---------SRFAVIERASIDEAYVDLTSAV 125
Query: 1916 QELSLTPLQ 1924
QE L LQ
Sbjct: 126 QE-RLQKLQ 133
Score = 44 (20.5 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 22/86 (25%), Positives = 41/86 (47%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPY-DFEG------YKEVSYCLYNLIASLTLNIEAVS 1731
R +G+ M+ A K CP+L + + G Y+E S + +++ + IE S
Sbjct: 55 RAFGVTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAV-IERAS 113
Query: 1732 LYTNESFLNALPEDIRQEVLDDLSRQ 1757
+ +E++++ L + QE L L Q
Sbjct: 114 I--DEAYVD-LTSAV-QERLQKLQGQ 135
Score = 37 (18.1 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 1634 PELQDEPVAVAHGKGNSSKVRE 1655
P+L V + GK N +K RE
Sbjct: 73 PDLLLAQVRESRGKANLTKYRE 94
>UNIPROTKB|C9JPS2 [details] [associations]
symbol:REV1 "DNA repair protein REV1" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 EMBL:AC018690 GO:GO:0003887 HGNC:HGNC:14060
ChiTaRS:REV1 IPI:IPI00917273 ProteinModelPortal:C9JPS2 SMR:C9JPS2
STRING:C9JPS2 Ensembl:ENST00000450415 ArrayExpress:C9JPS2
Bgee:C9JPS2 Uniprot:C9JPS2
Length = 192
Score = 191 (72.3 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 43/111 (38%), Positives = 69/111 (62%)
Query: 1565 QYVNELREKHDGVFRGIEAIRKWKT---SLGITEDEDLEETFSDNPSPSEPEPVIMHIDM 1621
++VN L+ + +G+F G E ++K KT +L +T+ D+ N SP + IMH+DM
Sbjct: 8 EFVNTLQRQSNGIFPGREKLKKMKTGRSALVVTDTGDMSVL---N-SPRH-QSCIMHVDM 62
Query: 1622 DCFFVSVGIRHHPELQDEPVAVAHGKGNS-SKVREGVDRQAEFDIYRQRTM 1671
DCFFVSVGIR+ P+L+ +PVAV +G + +R G + Q E+ Y+ + +
Sbjct: 63 DCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKIL 113
>UNIPROTKB|Q5NBJ3 [details] [associations]
symbol:GYRB "DNA gyrase subunit B,
chloroplastic/mitochondrial" species:39947 "Oryza sativa Japonica
Group" [GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing)
activity" evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524 GO:GO:0009507
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
ProtClustDB:CLSN2689450 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
PROSITE:PS50880 OMA:IFETTEF EMBL:AP001073 EMBL:AP000969
EMBL:AK102391 RefSeq:NP_001042691.1 UniGene:Os.37563
ProteinModelPortal:Q5NBJ3 STRING:Q5NBJ3 PRIDE:Q5NBJ3 GeneID:4326261
KEGG:dosa:Os01t0268300-01 KEGG:osa:4326261 Gramene:Q5NBJ3
Uniprot:Q5NBJ3
Length = 729
Score = 171 (65.3 bits), Expect = 5.6e-13, Sum P(4) = 5.6e-13
Identities = 50/171 (29%), Positives = 80/171 (46%)
Query: 447 KGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPL 503
K S+ +P KL D + + S + + EGDSA G GRD+ + PL
Sbjct: 487 KSVLKSSSLPGKLADCASSDPEES---EIFIVEGDSA-----GGSAKQGRDRKFQAILPL 538
Query: 504 RGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDG 563
RGK+LN+ + +N EI NL+ LGL + E LRY +++I+TD D DG
Sbjct: 539 RGKILNIERRDEAALYKNEEIQNLIVALGLGVKGEDFNKE---ALRYHKIVILTDADVDG 595
Query: 564 SHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEE 614
+HI+ L++ F L + + P+ K + ++ Y + +E
Sbjct: 596 AHIRTLLLTFFFRYQKALFDEGCIYVGVPPLYKVERGKQAHYCYDDADLKE 646
Score = 109 (43.4 bits), Expect = 5.6e-13, Sum P(4) = 5.6e-13
Identities = 68/284 (23%), Positives = 118/284 (41%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GL+ + EIL NA D Q + + ++ + N++SV +NG+GIP H K
Sbjct: 118 GLHHLVYEILDNAVDEAQAGYATK-VDVILHGD-NSVSVTDNGRGIPTDIHPQTKKSCVE 175
Query: 143 MIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNG------YG-A 195
+ + + + T V + G L+ N E +VT R+G Y
Sbjct: 176 TVLTLMHAGGKFGGSKSGYT--VSGGLHGVGLSVVNALSEALEVTVWRDGKEYRQNYSRG 233
Query: 196 KLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGS-KDDFTKITF-TPDLTK 253
K + +S+ + + S S + W D T+ + + ++ F P+LT
Sbjct: 234 KAITMLTSRTLSDESSSRQGTRIR-FWPDKHIFTTTMDFDFNTIAGRIRELAFLNPELT- 291
Query: 254 FKMTSLDKDMVDL-ITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDP 312
+L K+ DL + Y A + +LN +K K+ D + R++ DG
Sbjct: 292 ---IALTKEEDDLQVQHNEYCYAGGLVEYVKWLNTDK---KSLHDPIAF---RKEMDGIT 342
Query: 313 VKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAV 356
V +V+ +W + + SD + + NSI T GG H+D +
Sbjct: 343 V-----DVSLQW-CSDSYSDT---VLGYANSIRTIDGGTHIDGL 377
Score = 45 (20.9 bits), Expect = 5.6e-13, Sum P(4) = 5.6e-13
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 398 AKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENM 443
+KTL D + L G V+ + I + NP F+ QTK +
Sbjct: 392 SKTLKDKDISLSGE-----HVREGMTCIIAVKVPNPEFEGQTKTRL 432
Score = 37 (18.1 bits), Expect = 5.6e-13, Sum P(4) = 5.6e-13
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 22 KKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGS 55
++K A + + + Q L+ + RP YIGS
Sbjct: 81 QEKRVAGEYTAANV-QVLEALDGVRTRPGMYIGS 113
>UNIPROTKB|P63987 [details] [associations]
symbol:dinB2 "DNA polymerase IV 2" species:1773
"Mycobacterium tuberculosis" [GO:0005829 "cytosol" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005829 GO:GO:0005886 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 EMBL:BX842581 GO:GO:0003887 eggNOG:COG0389
HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
SUPFAM:SSF100879 PIR:A70649 RefSeq:NP_217572.1 RefSeq:NP_337660.1
RefSeq:YP_006516517.1 ProteinModelPortal:P63987 SMR:P63987
EnsemblBacteria:EBMYCT00000003933 EnsemblBacteria:EBMYCT00000069414
GeneID:13317860 GeneID:887519 GeneID:923303 KEGG:mtc:MT3142
KEGG:mtu:Rv3056 KEGG:mtv:RVBD_3056 PATRIC:18128668
TubercuList:Rv3056 OMA:IIAHIDI ProtClustDB:PRK03352 Uniprot:P63987
Length = 346
Score = 155 (59.6 bits), Expect = 7.2e-13, Sum P(2) = 7.2e-13
Identities = 52/178 (29%), Positives = 84/178 (47%)
Query: 1922 PLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPL 1981
P++ A +R+ I +TG +CS G NK +A++AT AKP G + LT M + +
Sbjct: 125 PIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTV 184
Query: 1982 SDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFE 2041
L GVG +L LG T L + L + G + L L +G D E++ +
Sbjct: 185 EALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLLL-AKGGGDTEVSAQ 243
Query: 2042 HQ-RKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCIT-LKLMVRSA 2097
+S S V + EME+ + +LA ++ L EV + +T + + VR+A
Sbjct: 244 AWVPRSRSHAVTFPRDLTCRSEMESAVTELA---QRTLNEVVASSRTVTRVAVTVRTA 298
Score = 101 (40.6 bits), Expect = 7.2e-13, Sum P(2) = 7.2e-13
Identities = 33/113 (29%), Positives = 52/113 (46%)
Query: 1616 IMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRMG 1675
I+H+D+D F SV + HPEL PV V G G+ ++ R+ V A ++
Sbjct: 9 ILHVDLDQFLASVELLRHPELAGLPVIVG-GNGDPTEPRKVVTC-ASYE----------- 55
Query: 1676 LNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIE 1728
R YG+ GM + A ++CP +P + Y S + L+ L +E
Sbjct: 56 --ARAYGVRAGMPLRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVE 106
>UNIPROTKB|P35886 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:100226
"Streptomyces coelicolor A3(2)" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 GenomeReviews:AL645882_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 EMBL:L27063
EMBL:AL939118 eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF ProtClustDB:PRK05644
HOGENOM:HOG000075154 RefSeq:NP_628061.1 ProteinModelPortal:P35886
GeneID:1099310 KEGG:sco:SCO3874 PATRIC:23737532 Uniprot:P35886
Length = 686
Score = 188 (71.2 bits), Expect = 9.1e-13, Sum P(5) = 9.1e-13
Identities = 55/172 (31%), Positives = 88/172 (51%)
Query: 442 NMTLQKGSFGSTCVP-KLED--ANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKY 498
++T +KG S +P KL D +ND TK C + + EGDSA A SG +Y
Sbjct: 437 DLTRRKGLLESASLPGKLSDCQSNDP-TK----CEIFIVEGDSAGGSAKSGRN----PQY 487
Query: 499 -GVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMT 557
+ P+RGK+LNV +A +IL+N EI ++ G + + D++ LRY ++++M
Sbjct: 488 QAILPIRGKILNVEKARIDRILQNQEIQAMISAFGTGVHEDF----DIEKLRYHKIILMA 543
Query: 558 DQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSF-YS 608
D D DG HI L++ F+ L+ + P+ K R++ + YS
Sbjct: 544 DADVDGQHINTLLLTFLFRFMRPLVESGHVYLSRPPLYKIKWGRDDFEYAYS 595
Score = 77 (32.2 bits), Expect = 9.1e-13, Sum P(5) = 9.1e-13
Identities = 26/108 (24%), Positives = 50/108 (46%)
Query: 186 VTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKI 245
V+GG +G G + N S++ VE Y+ + Q +K + + ++ +++ T +
Sbjct: 138 VSGGLHGVGVSVVNALSTRVAVEVKTDGYR--WTQEYKLGVPTASLARHEA-TEETGTTV 194
Query: 246 TFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVK 293
TF D F+ T + ++RR + A K +K+ L E+ K
Sbjct: 195 TFWADGDIFETTDYS---FETLSRRFQEMAFLNKGLKINLTDERESAK 239
Score = 54 (24.1 bits), Expect = 9.1e-13, Sum P(5) = 9.1e-13
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPV 130
GL+ + E++ N+ D + I +T+ + + V +NG+GIPV
Sbjct: 62 GLHHLVQEVVDNSVDEALAG-HADTIDVTILPDGG-VRVVDNGRGIPV 107
Score = 40 (19.1 bits), Expect = 9.1e-13, Sum P(5) = 9.1e-13
Identities = 14/58 (24%), Positives = 25/58 (43%)
Query: 2026 LYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKM 2083
LYK G DD E + + + E+ R + E +++ G E EE+++
Sbjct: 580 LYKIKWGRDDFEYAYSDRERDALIEMG---RQAGKRIREDSVQRFKGLGEMNAEELRI 634
Score = 40 (19.1 bits), Expect = 9.1e-13, Sum P(5) = 9.1e-13
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 297 DYVKLYTDRQDEDGDP--VKIIYENVNPRWEVAIAPS-DRGFQQ--VSFVNSIATTKGGR 351
D+V R+ E P + + E+ + + +A + G+ + SF N I T +GG
Sbjct: 268 DFVTYLNSRKGELVHPTVIDLEAEDKDKSLSLEVAMQWNGGYTEGVYSFANIIHTHEGGT 327
Query: 352 H 352
H
Sbjct: 328 H 328
>MGI|MGI:1347081 [details] [associations]
symbol:Poli "polymerase (DNA directed), iota" species:10090
"Mus musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IDA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 MGI:MGI:1347081 GO:GO:0005634 GO:GO:0046872
GO:GO:0003684 GO:GO:0006260 GO:GO:0006281 GO:GO:0003887
eggNOG:COG0389 Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 GeneTree:ENSGT00530000062942 CTD:11201
HOGENOM:HOG000234325 HOVERGEN:HBG053634 KO:K03510 OrthoDB:EOG46T310
EMBL:AF151691 EMBL:AY515316 EMBL:AY515317 EMBL:BC082278
IPI:IPI00553425 IPI:IPI00985545 RefSeq:NP_001129562.1
UniGene:Mm.244352 PDB:2KWU PDB:2KWV PDB:3AI4 PDBsum:2KWU
PDBsum:2KWV PDBsum:3AI4 ProteinModelPortal:Q6R3M4 SMR:Q6R3M4
IntAct:Q6R3M4 STRING:Q6R3M4 PhosphoSite:Q6R3M4 PRIDE:Q6R3M4
Ensembl:ENSMUST00000043286 Ensembl:ENSMUST00000161542 GeneID:26447
KEGG:mmu:26447 UCSC:uc008foi.2 UCSC:uc008fok.2 InParanoid:Q6R3M4
BindingDB:Q6R3M4 ChEMBL:CHEMBL5159 NextBio:304545 Bgee:Q6R3M4
CleanEx:MM_POLI Genevestigator:Q6R3M4 GermOnline:ENSMUSG00000038425
Uniprot:Q6R3M4
Length = 717
Score = 164 (62.8 bits), Expect = 1.1e-12, Sum P(4) = 1.1e-12
Identities = 54/225 (24%), Positives = 102/225 (45%)
Query: 1875 EAYQEMLSCVQSAMKHKPSSESKIVSAVS--CDEMYVDCSQLLQELSLTPLQFASYLRET 1932
E + ++ V+ ++ PS E V+ + V+ ++ + Q A+ +RE
Sbjct: 127 ENFVDLTEMVEKRLQQLPSEEVPSVTVFGHVYNNQSVNLHNIMHRRLVVGSQIAAEMREA 186
Query: 1933 IAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIP-LSDLPGVGHSL 1991
+ + G T G NKL A+L + KPN Q L P+ + ++ + ++PG+G+
Sbjct: 187 MYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKT 246
Query: 1992 LFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEV 2051
+L LG + DLQ +K L+ E+G + + GED +T +S S E
Sbjct: 247 AKRLEVLGINSVHDLQTFPIKTLEKELGIAIAQRIQQLSFGEDKSPVTPSGPPQSFSEED 306
Query: 2052 NYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKG-KCITLKLMVR 2095
+ + + E + +++L + L V G K T++L++R
Sbjct: 307 TFK-KCSSEVEAKAKIEELLSSL---LTRVCQDGRKPHTVRLVIR 347
Score = 89 (36.4 bits), Expect = 1.1e-12, Sum P(4) = 1.1e-12
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 1607 PSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
P+ VI+H+D+DCF+ V + +PEL+D P+ V
Sbjct: 21 PTQISSSRVIVHVDLDCFYAQVEMISNPELKDRPLGV 57
Score = 68 (29.0 bits), Expect = 1.1e-12, Sum P(4) = 1.1e-12
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVP-YDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNES 1737
R+ G+ M V A +KCP L +V D Y+E+SY + L+ + +E + +E+
Sbjct: 71 RKLGVRKLMNVRDAKEKCPQLVLVNGEDLSRYREMSYKVTELLEEFSPAVERLGF--DEN 128
Query: 1738 FLNALPEDIRQEV 1750
F++ L E + + +
Sbjct: 129 FVD-LTEMVEKRL 140
Score = 38 (18.4 bits), Expect = 1.1e-12, Sum P(4) = 1.1e-12
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 2214 TFFTNKGKPPDQLNNPRPGPSNSTITPGPSNSTLPPGPSNSTLPPGPSN 2262
+FF+ K Q+ R P ++ + ++ P P S L PG ++
Sbjct: 543 SFFSTK-----QMQASRLSPRDTALPSKRVSAASPCEPGTSGLSPGSTS 586
Score = 37 (18.1 bits), Expect = 3.5e-05, Sum P(3) = 3.5e-05
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 506 KLLNVREATHK---QILENAE 523
KL+NVR+A K +L N E
Sbjct: 77 KLMNVRDAKEKCPQLVLVNGE 97
>MGI|MGI:1891457 [details] [associations]
symbol:Polh "polymerase (DNA directed), eta (RAD 30
related)" species:10090 "Mus musculus" [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006290
"pyrimidine dimer repair" evidence=IDA] [GO:0006301
"postreplication repair" evidence=IDA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0010225 "response to UV-C"
evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 MGI:MGI:1891457 GO:GO:0005634 GO:GO:0005737
GO:GO:0046872 GO:GO:0003684 GO:GO:0006260 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879 KO:K03509
CTD:5429 HOGENOM:HOG000115605 HOVERGEN:HBG053633 OMA:SPPLTML
OrthoDB:EOG4RBQJ8 InterPro:IPR017061 PIRSF:PIRSF036603
EMBL:AB027128 EMBL:AB037184 EMBL:AK036296 IPI:IPI00122040
RefSeq:NP_109640.1 UniGene:Mm.311585 ProteinModelPortal:Q9JJN0
SMR:Q9JJN0 IntAct:Q9JJN0 STRING:Q9JJN0 PhosphoSite:Q9JJN0
PRIDE:Q9JJN0 Ensembl:ENSMUST00000024749 GeneID:80905 KEGG:mmu:80905
UCSC:uc008crx.1 GeneTree:ENSGT00530000062942 InParanoid:Q9JJN0
NextBio:350254 Bgee:Q9JJN0 CleanEx:MM_POLH Genevestigator:Q9JJN0
GermOnline:ENSMUSG00000023953 Uniprot:Q9JJN0
Length = 694
Score = 177 (67.4 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 48/169 (28%), Positives = 81/169 (47%)
Query: 1929 LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVG 1988
+R I +TG CS G NK+ A+LA KPN Q ++ + +P+ + +G
Sbjct: 199 MRAAIESKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLG 258
Query: 1989 HSL-LFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSV 2047
L + LG + GDL + +LQ+ G KNG LY CRG + + K++
Sbjct: 259 GKLGASVIEVLGIEYMGDLTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTI 318
Query: 2048 SAEVNY-G-IRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMV 2094
N+ G ++++ +L QLA E+E+RL + + + +L+V
Sbjct: 319 GCSKNFPGKTALATREQVQWWLLQLALELEERLTKDRNDNDRVATQLVV 367
Score = 83 (34.3 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 1615 VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGK 1647
V+ +DMDCFFV V R +P L+++P AV K
Sbjct: 8 VVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYK 40
Score = 52 (23.4 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 20/69 (28%), Positives = 31/69 (44%)
Query: 1856 ILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLL 1915
+LL +R GK T + EA E++ + S ++ S DE Y+D + +
Sbjct: 75 LLLAQVRESRGKANLTKYREASVEVMEIM---------SYFAVIERASIDEAYIDLTSAV 125
Query: 1916 QELSLTPLQ 1924
QE L LQ
Sbjct: 126 QE-RLQKLQ 133
Score = 44 (20.5 bits), Expect = 8.3e-12, Sum P(3) = 8.3e-12
Identities = 22/86 (25%), Positives = 41/86 (47%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPY-DFEG------YKEVSYCLYNLIASLTLNIEAVS 1731
R +G+ M+ A K CP+L + + G Y+E S + +++ + IE S
Sbjct: 55 RAFGVTRNMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSYFAV-IERAS 113
Query: 1732 LYTNESFLNALPEDIRQEVLDDLSRQ 1757
+ +E++++ L + QE L L Q
Sbjct: 114 I--DEAYID-LTSAV-QERLQKLQGQ 135
Score = 37 (18.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 1634 PELQDEPVAVAHGKGNSSKVRE 1655
P+L V + GK N +K RE
Sbjct: 73 PDLLLAQVRESRGKANLTKYRE 94
>UNIPROTKB|Q3KL33 [details] [associations]
symbol:gyrB_2 "DNA gyrase subunit B" species:315277
"Chlamydia trachomatis A/HAR-13" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 EMBL:CP000051
GenomeReviews:CP000051_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670
HOGENOM:HOG000075156 ProtClustDB:PRK05559 RefSeq:YP_328487.1
ProteinModelPortal:Q3KL33 STRING:Q3KL33 GeneID:3687725
KEGG:cta:CTA_0718 PATRIC:32023360 OMA:VFESQTK
BioCyc:CTRA315277:GI4C-739-MONOMER Uniprot:Q3KL33
Length = 605
Score = 165 (63.1 bits), Expect = 1.4e-12, Sum P(6) = 1.4e-12
Identities = 49/163 (30%), Positives = 82/163 (50%)
Query: 455 VPKLEDANDAGTKNSI---DCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVR 511
+PKL D T NS+ + ++ +TEG+SA + ++ + + VF LRGK +NV
Sbjct: 377 IPKLRDCKFHLTDNSLYGKNSSIFITEGESASASILASRNPLTQ---AVFSLRGKPMNVF 433
Query: 512 EATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLII 571
+ + I +N E+ L LGL + ++ LRY ++++ TD D DG HI+ L+I
Sbjct: 434 SSKEETIYKNDELFYLTTALGLHK-------DSLQNLRYNQVILATDADVDGMHIRNLMI 486
Query: 572 NFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEE 614
F + L+ L TP+ K ++ +FY E E+
Sbjct: 487 TFFLKTFLPLVASNHLFILETPLFKVR--HKDATFYCYSEEEK 527
Score = 85 (35.0 bits), Expect = 1.4e-12, Sum P(6) = 1.4e-12
Identities = 46/187 (24%), Positives = 81/187 (43%)
Query: 175 TSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEI 234
T + Y + + G NG G K N S F V S K F K + SK
Sbjct: 97 TGAKYTQDVFHFSVGLNGVGLKAVNALSQHFSVR---SVRNKKFL---KASFSKGILLHT 150
Query: 235 KSGS-KD-DFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPV 292
+ G+ +D D T++ F+PD F+ S V+ + ++ + + NGE+ +
Sbjct: 151 EQGATQDPDGTEVVFSPDHELFENFSFQ---VEFLKKKIRQYTYLHPGLTIIYNGER--I 205
Query: 293 KNFQDYVKLYTDRQDEDGDPVKIIYENVN-PRWEVAI--APSDRGFQQV-SFVNSIATTK 348
+ + + L+ ++E P ++Y + ++A + ++ +Q SFVN TT
Sbjct: 206 VSTRGLLDLF---EEEVQTP--LLYSPITFQHSDLAFLFSHTETSSEQYFSFVNGQETTD 260
Query: 349 GGRHVDA 355
GG H+ A
Sbjct: 261 GGTHLVA 267
Score = 55 (24.4 bits), Expect = 1.4e-12, Sum P(6) = 1.4e-12
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPV 130
G+Y +F E++ NA D + I IT + + +S+ + G+GIP+
Sbjct: 41 GIYTLFKEVVDNAIDEFVMGYG-HTIHIT--GDAHELSIRDEGRGIPL 85
Score = 46 (21.3 bits), Expect = 1.4e-12, Sum P(6) = 1.4e-12
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 22 KKKTPANKMSVEKIYQKKSQLEHILLRPDTYIG 54
+KKT ++ S+ + + L+HI LR YIG
Sbjct: 2 RKKTAYSESSIISL----ASLDHIRLRAGMYIG 30
Score = 43 (20.2 bits), Expect = 1.4e-12, Sum P(6) = 1.4e-12
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 2029 HCRGEDDKELTFEH-QRKSVSAEVNY--GIRFQNNQEMETFL 2067
+C E++K T EH +K S E+ G+ + +E ++F+
Sbjct: 520 YCYSEEEKLSTIEHIGKKESSLEITRFKGLGEISPKEFKSFI 561
Score = 40 (19.1 bits), Expect = 1.4e-12, Sum P(6) = 1.4e-12
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 430 IVNPTFDSQTKENM 443
I +P F+SQTK +
Sbjct: 301 IASPIFESQTKNKL 314
Score = 38 (18.4 bits), Expect = 4.2e-12, Sum P(6) = 4.2e-12
Identities = 6/9 (66%), Positives = 9/9 (100%)
Query: 1864 HVGKKESTV 1872
H+GKKES++
Sbjct: 533 HIGKKESSL 541
>UNIPROTKB|F1RRJ6 [details] [associations]
symbol:POLH "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010225 "response to UV-C" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
Gene3D:3.30.1490.100 SUPFAM:SSF100879 KO:K03509 CTD:5429
OMA:SPPLTML InterPro:IPR017061 PIRSF:PIRSF036603
GeneTree:ENSGT00530000062942 EMBL:CR974460 RefSeq:XP_003356678.1
UniGene:Ssc.83954 Ensembl:ENSSSCT00000001879 GeneID:100153104
KEGG:ssc:100153104 Uniprot:F1RRJ6
Length = 698
Score = 180 (68.4 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 57/228 (25%), Positives = 106/228 (46%)
Query: 1871 TVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTP-LQFASYL 1929
T + E + + L+ + ++ + + ++ + D + D + EL LT +
Sbjct: 144 TTYIEGFPQGLTTAEGTVEKEEMRKQGLLQWL--DSLQSDNTSS-PELQLTVGAVIVEEM 200
Query: 1930 RETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGH 1989
R I ++TG CS G NK+ A+LA KPN Q ++ + +P+S + +G
Sbjct: 201 RAAIERQTGLQCSAGISHNKVLAKLACALHKPNRQTLVSLGSVPQVFSQMPISKVRHLGG 260
Query: 1990 SLLFKL-NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVS 2048
L + LG + G+L + +LQ+ G KNG LY CRG + + + K++
Sbjct: 261 KLGASIIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHEPVRPRQVTKTLG 320
Query: 2049 AEVNY-G-IRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMV 2094
N+ G ++++ +L QLA E+E+RL + + + +L V
Sbjct: 321 CGKNFPGKTALVTREQVQWWLLQLAQELEERLTKDRNDNDRVATQLAV 368
Score = 82 (33.9 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 1615 VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGK 1647
V+ +DMDCFFV V R +P L+++P AV K
Sbjct: 8 VVALLDMDCFFVQVEQRQNPHLKNKPCAVVQYK 40
Score = 37 (18.1 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 1634 PELQDEPVAVAHGKGNSSKVRE 1655
P+L V + GK N +K RE
Sbjct: 73 PDLLLAQVLESRGKANLTKYRE 94
>DICTYBASE|DDB_G0287149 [details] [associations]
symbol:DDB_G0287149 "UMUC-like DNA-repair protein"
species:44689 "Dictyostelium discoideum" [GO:0006281 "DNA repair"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 dictyBase:DDB_G0287149
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 eggNOG:COG0389
EMBL:AAFI02000098 KO:K03511 RefSeq:XP_637357.1
ProteinModelPortal:Q54KS3 EnsemblProtists:DDB0304434 GeneID:8625979
KEGG:ddi:DDB_G0287149 InParanoid:Q54KS3 OMA:YANVEEM Uniprot:Q54KS3
Length = 517
Score = 152 (58.6 bits), Expect = 2.9e-12, Sum P(3) = 2.9e-12
Identities = 56/223 (25%), Positives = 106/223 (47%)
Query: 1903 SCDEMYVDCSQLLQEL-SLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKP 1961
S DE +D ++ L++ +LT + A+ L+ I ++T TCS G + L ++++++ KP
Sbjct: 176 SLDEGCIDITEYLKDNENLTGIDVANQLQNDIFEKTTLTCSMGISCSPLLSKISSEINKP 235
Query: 1962 NGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNK 2021
NG F+L Q +F+ I + LPG+G L +LG + D+ + L + +
Sbjct: 236 NGYFYLDKQYSQEFIKTIQIKKLPGIGKVRQELLKTLGLEFVSDIIEHRYE-LYYLLPEQ 294
Query: 2022 NGLTLYKHCRGED--DKELTFEHQRKS--VSAEVNYGIRFQNNQEMETFLKQLAGEVEKR 2077
L L+KH + +F +K +S E N + +++E +K L +K
Sbjct: 295 REL-LFKHALAIPIFPNKSSFRINKKKTMISKEKNCK-ELYDEKDLEDLMKSL---FDKA 349
Query: 2078 LEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSS 2120
+E + ++ K T L+V+ + + + + T SSS
Sbjct: 350 IEMLNIENKYATT-LIVKVQDFSFKVINYSYQLISTTTTSSSS 391
Score = 81 (33.6 bits), Expect = 2.9e-12, Sum P(3) = 2.9e-12
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSL 1732
R YG+ +G+ A+K CP+L I+P + Y+EVS + N++ N + SL
Sbjct: 124 RAYGVRSGLPGLLAMKLCPHLIILPSRMDRYREVSLIIRNILYKFDKNYVSPSL 177
Score = 71 (30.1 bits), Expect = 2.9e-12, Sum P(3) = 2.9e-12
Identities = 27/96 (28%), Positives = 43/96 (44%)
Query: 1556 LSTMGSMFKQYV--NELREK--HDG--VFRGIEAIRKWKTSLGITED--EDLEETFSDNP 1607
+ ++ SM KQ+ +EK D IE I + TE+ E ++ ++
Sbjct: 15 IESINSMLKQFSVGTHFQEKLERDSKRTREYIEGILSKLNEIPDTEEYQEKVDSYLTELT 74
Query: 1608 SPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
S + +HIDMD F+ +V + EL PVAV
Sbjct: 75 SKIDQSRTFIHIDMDAFYANVEEMDNKELIGHPVAV 110
Score = 38 (18.4 bits), Expect = 6.3e-09, Sum P(3) = 6.3e-09
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 839 GSQTQE--EEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSD 896
G+ QE E D + +Y+ G+ + E +K D +TEL ++ T + D
Sbjct: 28 GTHFQEKLERDSKRTREYIEGILSKLNEIPDTEEYQEKVDSYLTELTSKIDQSRTFIHID 87
Query: 897 DLDA 900
+DA
Sbjct: 88 -MDA 90
>UNIPROTKB|Q7NHM9 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:251221
"Gloeobacter violaceus PCC 7421" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
OMA:IFETTEF ProtClustDB:PRK05644 EMBL:BA000045
GenomeReviews:BA000045_GR HSSP:P06982 RefSeq:NP_925452.1
ProteinModelPortal:Q7NHM9 GeneID:2600907 KEGG:gvi:gvip344
PATRIC:22044491 BioCyc:GVIO251221:GH9A-2555-MONOMER Uniprot:Q7NHM9
Length = 644
Score = 181 (68.8 bits), Expect = 3.0e-12, Sum P(4) = 3.0e-12
Identities = 48/137 (35%), Positives = 75/137 (54%)
Query: 442 NMTLQKGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--Y 498
++ +K + S+ +P KL D +++ + + L EGDSA G GRD+
Sbjct: 393 DLVRRKSALESSTLPGKLADCQ---SRDPAESEVFLVEGDSA-----GGSAKQGRDRRFQ 444
Query: 499 GVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTD 558
+ PLRGK+LN+ A ++I N EI ++ LGL T D+ LRY R++IMTD
Sbjct: 445 AILPLRGKILNIERADDRKIYGNNEIQAMITGLGLGLK---TEEFDVGRLRYHRIIIMTD 501
Query: 559 QDQDGSHIKGLIINFIH 575
D DG+HI+ L++ F +
Sbjct: 502 ADVDGAHIRTLLLTFFY 518
Score = 79 (32.9 bits), Expect = 3.0e-12, Sum P(4) = 3.0e-12
Identities = 48/184 (26%), Positives = 78/184 (42%)
Query: 185 KVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTK 244
KV+GG +G GA + N S+ + T E K+ + Q + + + K T
Sbjct: 109 KVSGGLHGVGAAVVNALST-ILTATIWREGKQ-YIQRFHRGIPEGGLAVSSDSQKRRGTM 166
Query: 245 ITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKV-F--LNGEKLPVKNF------ 295
I+F PD F T +D D D + R + A V+ F L GE +++
Sbjct: 167 ISFLPDPEIFT-TGVDFDF-DTLLSRFRELAFLNAGVEFRFSDLRGETERTESYIYEGGI 224
Query: 296 QDYVKLYT-DRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQ--VSFVNSIATTKGGRH 352
++YVK T ++ D + I E E A+ S + + F N+I T GG H
Sbjct: 225 REYVKYMTREKAALHPDIIFINQERDGVSVECALQWSTDVYNDNVLGFANNIRTIDGGTH 284
Query: 353 VDAV 356
++ +
Sbjct: 285 LEGL 288
Score = 52 (23.4 bits), Expect = 3.0e-12, Sum P(4) = 3.0e-12
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 42 LEHILLRPDTYIGSVEP 58
LEH+ RP YIGS P
Sbjct: 16 LEHVRKRPGMYIGSTGP 32
Score = 39 (18.8 bits), Expect = 3.0e-12, Sum P(4) = 3.0e-12
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 418 VKNHIWIFINCLIVNPTFDSQTKENM 443
V+ + ++ + NP F+ QTK +
Sbjct: 318 VREGLTAVLSVKVPNPEFEGQTKTKL 343
>UNIPROTKB|A6VD80 [details] [associations]
symbol:parE "DNA topoisomerase IV, B subunit"
species:381754 "Pseudomonas aeruginosa PA7" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR005737 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 EMBL:CP000744 GenomeReviews:CP000744_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187
Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 TIGRFAMs:TIGR01055 RefSeq:YP_001351015.1
ProteinModelPortal:A6VD80 SMR:A6VD80 STRING:A6VD80 GeneID:5355906
KEGG:pap:PSPA7_5696 PATRIC:19832877 OMA:QARDKEF
BioCyc:PAER381754:GHMY-5702-MONOMER Uniprot:A6VD80
Length = 629
Score = 152 (58.6 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 45/154 (29%), Positives = 73/154 (47%)
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPLRGKLLNVREATHKQILE 520
D + + L L EGDSA G RDK + PLRGK+LN E ++L
Sbjct: 402 DCAGQEPMRAELFLVEGDSA-----GGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLA 456
Query: 521 NAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIIN-FIHHNWP 579
+ E++++ +G+ D+ LRYG++ I+ D D DG HI L+ F+ H P
Sbjct: 457 SQEVHDIAVAIGVDPG-----ASDLAQLRYGKICILADADSDGLHIATLLCALFVRHFRP 511
Query: 580 TLLRLPFLEEFITPIIKATKAREELSFYSLPEFE 613
L+ + + P+ + ++ +Y+L E E
Sbjct: 512 -LVEAGHVYVAMPPLYRIDLGKD--IYYALDEAE 542
Score = 101 (40.6 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 55/243 (22%), Positives = 98/243 (40%)
Query: 124 NGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEE 183
+ K + V+ H+D + V + G + + E+ V GV +I L ++++
Sbjct: 50 HAKSVQVILHQDNSLEV--IDDGRGMPVDIH--PEEGVPGV--ELILTKLHAGGKFSNKN 103
Query: 184 DKVTGGRNGYGAKLCNIFSSKFVVETS--CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDD 241
+ +GG +G G + N S++ V +EY+ +F +KD +V G ++
Sbjct: 104 YQFSGGLHGVGISVVNALSTRVEVRVKRDANEYRMTFADGFKDTDLEVIGTV---GRRNT 160
Query: 242 FTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLN-GEKLPVKNFQDYVK 300
T + F PD F + + + V N GE++ +F+D ++
Sbjct: 161 GTSVHFWPDPKYFDSAKFSVSRLKHVLKAKAVLCPGLSVVFEDKNTGERVEW-HFEDGLR 219
Query: 301 LY-TDRQDE----DGDPVKIIYENVNPR--WEVAIAPSDRGFQQVSFVNSIATTKGGRHV 353
Y TD E +P E W + P Q S+VN I T +GG HV
Sbjct: 220 SYLTDAVAELPRLPDEPFCGNLEGSKEAVSWALLWLPEGGESVQESYVNLIPTAQGGTHV 279
Query: 354 DAV 356
+ +
Sbjct: 280 NGL 282
Score = 57 (25.1 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 15/74 (20%), Positives = 40/74 (54%)
Query: 90 EILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLL 149
E++ N+ D + +++ ++Q+ N++ V ++G+G+PV H +E + +I L
Sbjct: 37 EVIDNSVDEALAGHAKS-VQVILHQD-NSLEVIDDGRGMPVDIHPEEGVPGVELILTKLH 94
Query: 150 TSSNYNDEEDKVTG 163
++++ + +G
Sbjct: 95 AGGKFSNKNYQFSG 108
Score = 49 (22.3 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 410 GMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G+ L P V I ++ + P F QTKE ++ ++ +
Sbjct: 303 GVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAA 342
>TIGR_CMR|SPO_3280 [details] [associations]
symbol:SPO_3280 "DNA polymerase IV, putative"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003684 GO:GO:0006281 GO:GO:0006261
GO:GO:0003887 HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
SUPFAM:SSF100879 OMA:PALCRDC ProtClustDB:PRK02794
RefSeq:YP_168477.1 ProteinModelPortal:Q5LND1 GeneID:3193147
KEGG:sil:SPO3280 PATRIC:23380003 Uniprot:Q5LND1
Length = 420
Score = 146 (56.5 bits), Expect = 1.9e-11, Sum P(3) = 1.9e-11
Identities = 49/195 (25%), Positives = 88/195 (45%)
Query: 1898 IVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATK 1957
+V +S DE ++D S + P + L + + E G T S G NK A++A+
Sbjct: 130 VVEPLSLDEAFMDLSGTQRLHGHPPAVMLARLVKRMKDELGVTGSIGLSHNKFLAKVASD 189
Query: 1958 KAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNE 2017
KP G + ++F+ + P+ + G+G + L G +T DL + L
Sbjct: 190 LEKPRGFSVIGRAETAEFLRDKPVRLIWGIGPAAQESLERAGIRTFTDLLRWEQEALVAR 249
Query: 2018 VGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKR 2077
G G L+ RGED + ++ KS+S E + + ++ + ++A +V R
Sbjct: 250 FGAM-GQRLWHLARGEDRRRVSAHDPIKSISNETTFFEDTGDADVLDGHIWRMAEKVADR 308
Query: 2078 LEEVKMKGKCITLKL 2092
+ + G+ +TLKL
Sbjct: 309 AKARGLAGRVVTLKL 323
Score = 81 (33.6 bits), Expect = 1.9e-11, Sum P(3) = 1.9e-11
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 1616 IMHIDMDCFFVSVGIRHHPELQDEPVAVAHGK 1647
I H+D D F+ SV R +P+L D+PV + GK
Sbjct: 40 IAHMDCDAFYASVEKRDNPDLADKPVIIGGGK 71
Score = 65 (27.9 bits), Expect = 1.9e-11, Sum P(3) = 1.9e-11
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 1682 GLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLN 1740
G+ + M + ALK CP ++ Y EVS + L+ LT +E +SL +E+F++
Sbjct: 86 GVRSAMPMFQALKLCPEAVVIKPRMSVYAEVSKQIRALMDELTPVVEPLSL--DEAFMD 142
Score = 38 (18.4 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 1882 SCVQSAMKHKPSSESKIVSAVSCDEMY 1908
SC + P +S ++ + CD Y
Sbjct: 23 SCGSPRVLRHPELDSLTIAHMDCDAFY 49
>TIGR_CMR|CBU_0064 [details] [associations]
symbol:CBU_0064 "DNA topoisomerase IV, B subunit"
species:227377 "Coxiella burnetii RSA 493" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR005737
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE016828 GenomeReviews:AE016828_GR Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 TIGRFAMs:TIGR01055 RefSeq:NP_819117.2
ProteinModelPortal:Q83F84 PRIDE:Q83F84 GeneID:1207934
KEGG:cbu:CBU_0064 PATRIC:17928803 OMA:GNVCVAR
BioCyc:CBUR227377:GJ7S-66-MONOMER Uniprot:Q83F84
Length = 641
Score = 156 (60.0 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 45/155 (29%), Positives = 77/155 (49%)
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPLRGKLLNVREATHKQILE 520
D + + C L L EGDSA G RDK + PLRGK+LN E +Q+L
Sbjct: 414 DCILSDPMQCELFLVEGDSA-----GGSAKQARDKNFQAIMPLRGKILNTWEVDTEQVLA 468
Query: 521 NAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIIN-FIHHNWP 579
+ ++++ +G+ +++ LRYG++ I+ D D DG HI L+ F+ H +P
Sbjct: 469 SQTVHDIAIAIGVDPDSS-----NLEGLRYGKICILADADSDGYHIATLLCALFMKHFYP 523
Query: 580 TLLRLPFLEEFITPIIKATKAREELSFYSLPEFEE 614
++ + + P+ + ++ FY+L E E+
Sbjct: 524 LVVS-GHVYVAMPPLYRIDVGKDV--FYALDEEEK 555
Score = 95 (38.5 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 52/211 (24%), Positives = 85/211 (40%)
Query: 158 EDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSE--YK 215
E K+TGV +I L + ++ + + +GG +G G + N S K V+ Y+
Sbjct: 92 EHKLTGV--ELILTRLHAGAKFSTKTYEYSGGLHGVGISVVNALSKKLTVQVKKDGKIYQ 149
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
F + SK+ P + T I F PD F + T RA
Sbjct: 150 MDFAH--GEKTSKLR-PVGSCNKSESGTSIHFWPDSHYFDSVKFGVSALKH-TMRAKAVL 205
Query: 276 ASTKDVKVFLN---GEKLP---VKNFQDYVK-LYTDRQDEDGDPVKIIY--ENVNPRWEV 326
V F++ G++L + + Y+ DR+ +P + E W +
Sbjct: 206 CPGLTVH-FIDENTGQRLQWYYAEGLKTYLADSLRDRERLPEEPWVGSFSGETEKADWAL 264
Query: 327 AIAPSD-RGFQQVSFVNSIATTKGGRHVDAV 356
A P D G ++ S+VN I T +GG HV+ +
Sbjct: 265 AWLPEDDEGIRE-SYVNLIPTPQGGTHVNGL 294
Score = 47 (21.6 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 9/46 (19%), Positives = 25/46 (54%)
Query: 118 TISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTG 163
++ V ++G+G+P+ H + K+ +I L + ++ + + +G
Sbjct: 75 SLEVIDDGRGMPIDVHPEHKLTGVELILTRLHAGAKFSTKTYEYSG 120
>UNIPROTKB|Q9RVW5 [details] [associations]
symbol:DR_0906 "DNA gyrase, subunit B" species:243230
"Deinococcus radiodurans R1" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 EMBL:AE000513
GenomeReviews:AE000513_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 KO:K02470 Gene3D:3.40.50.670 OMA:IFETTEF
ProtClustDB:PRK05644 HOGENOM:HOG000075154 HSSP:P06982 PIR:A75461
RefSeq:NP_294630.1 ProteinModelPortal:Q9RVW5 SMR:Q9RVW5
GeneID:1799432 KEGG:dra:DR_0906 PATRIC:21629376
BioCyc:DRAD243230:GH46-1277-MONOMER Uniprot:Q9RVW5
Length = 663
Score = 187 (70.9 bits), Expect = 2.4e-11, Sum P(3) = 2.4e-11
Identities = 51/162 (31%), Positives = 81/162 (50%)
Query: 463 DAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENA 522
D +++ + L + EG+SA A G R + PLRGK+LNV +A +IL+NA
Sbjct: 428 DCSSQDPAESELFIVEGNSAGGSAKGGRE---RRFQAILPLRGKILNVEKAELNKILKNA 484
Query: 523 EINNLVKILGLQYSKKYTTVE-DMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTL 581
EI +L+ +G + K + D++ LRY +++IMTD D DG HI L++ F +
Sbjct: 485 EIRSLIGAIGAGFDGKGEEMRFDLENLRYHKIVIMTDADMDGGHITTLLLTFFFRFMRPI 544
Query: 582 LRLPFLEEFITPIIKATKAREELSFYSLPEF--EEWKEETTN 621
+ L P+ K T + + + F EE KE +
Sbjct: 545 VEQGHLYIAQPPLYKITVGAQTKNNKGVYLFTNEELKEHVAD 586
Score = 74 (31.1 bits), Expect = 2.4e-11, Sum P(3) = 2.4e-11
Identities = 29/125 (23%), Positives = 53/125 (42%)
Query: 168 MIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMS 227
+IF L + KV+GG +G G+ + N S+ ++ + +++K+ + +
Sbjct: 101 VIFSELHAGGKFGQGAYKVSGGLHGVGSTVVNALST--YLDVTVNKHKQ-LHHIRFERGV 157
Query: 228 KVTSPEIKSGSKDDF---TKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVF 284
V E+ + D TK++F PD T FK D L R A +K+
Sbjct: 158 LVQPLEVLGATPKDVKWSTKVSFHPDPTIFK--EFDNQFDYLRIRNRLRELAYLTGLKIV 215
Query: 285 LNGEK 289
+ E+
Sbjct: 216 IRDER 220
Score = 58 (25.5 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 21/85 (24%), Positives = 39/85 (45%)
Query: 79 TYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKM 138
T + G +++ EI+ N D I+I ++ + + +V ++G+GIPV K +
Sbjct: 39 TGIDGYHQLLTEIIDNGIDEGLAGFAGE-IQIVLHAD-GSATVTDDGRGIPVDIMKSKGR 96
Query: 139 FVPTMIFGHLLTSSNYNDEEDKVTG 163
+IF L + KV+G
Sbjct: 97 PAIEVIFSELHAGGKFGQGAYKVSG 121
Score = 37 (18.1 bits), Expect = 2.4e-11, Sum P(3) = 2.4e-11
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 1403 PHTKI-KKLKPGDKIIKPEWIVDSISAGKLLDHKKYL 1438
P T++ K++ D II E I D++ ++ K ++
Sbjct: 617 PETRVLKRVSIDDLIIANE-IFDALMGSEVAPRKDFI 652
>UNIPROTKB|Q9KPD9 [details] [associations]
symbol:VC_2431 "Topoisomerase IV, subunit B" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0007059 "chromosome
segregation" evidence=ISS] [GO:0009340 "DNA topoisomerase IV
complex" evidence=ISS] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR005737 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 Gene3D:3.40.50.670 KO:K02622
ProtClustDB:PRK05559 TIGRFAMs:TIGR01055 HSSP:P06982 OMA:GNVCVAR
PIR:G82078 RefSeq:NP_232061.1 ProteinModelPortal:Q9KPD9 SMR:Q9KPD9
DNASU:2612973 GeneID:2612973 KEGG:vch:VC2431 PATRIC:20083881
GO:GO:0009340 Uniprot:Q9KPD9
Length = 626
Score = 159 (61.0 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 51/186 (27%), Positives = 88/186 (47%)
Query: 430 IVNPTFDSQTKENMTLQKGSFGSTCVPKLEDANDAGTKNSIDCT-LILTEGDSAKSLAVS 488
I N + + + +K + G KL D T ++ T L L EGDSA A
Sbjct: 373 IANAHSRMRASKKVVRKKIASGPALPGKLTDC----TVQDLNRTELFLVEGDSAGGSAKQ 428
Query: 489 GLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTL 548
R+ V PLRGK+LN E + Q+L + E++++ LG+ ++++ L
Sbjct: 429 ARD---REFQAVMPLRGKILNTWEVSADQVLASQEVHDISVALGIDPDS-----DNLEAL 480
Query: 549 RYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYS 608
RYG++ I+ D D DG HI L+ ++ L++ + + P+ + +E FY+
Sbjct: 481 RYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKEV--FYA 538
Query: 609 LPEFEE 614
L + E+
Sbjct: 539 LDDQEK 544
Score = 90 (36.7 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 53/211 (25%), Positives = 89/211 (42%)
Query: 158 EDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF--VVETSCSEYK 215
E+KV+GV +I L ++++ + +GG +G G + N S + V Y+
Sbjct: 81 EEKVSGV--ELILCKLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVAVRRDGQVYE 138
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR-RAYDA 274
+F+ D ++++T G ++ T + F PD TK+ S + + LI RA
Sbjct: 139 IAFEH--GDKVTELTVTGT-CGRRNTGTSVHFWPD-TKY-FDSPNFSVSRLINNLRAKAV 193
Query: 275 AASTKDV----KVFLNGEK-LPVKNFQDY----VKLYTDRQDEDGDPVKIIYENVNPRWE 325
++ KV N + L +DY VK YT +E + + W
Sbjct: 194 LCPGLEIIFTDKVNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEPFTG-EFTAQTEAATWA 252
Query: 326 VAIAPSDRGFQQVSFVNSIATTKGGRHVDAV 356
V P S+VN I T +GG HV+ +
Sbjct: 253 VIWLPEGGELITESYVNLIPTAQGGTHVNGL 283
Score = 52 (23.4 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 12/56 (21%), Positives = 32/56 (57%)
Query: 108 IKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTG 163
I++ ++ + ++ V ++G+G+PV H +EK+ +I L ++++ + +G
Sbjct: 55 IQVILHAD-QSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSG 109
>TIGR_CMR|VC_2431 [details] [associations]
symbol:VC_2431 "topoisomerase IV, subunit B" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006265 "DNA topological change"
evidence=ISS] [GO:0007059 "chromosome segregation" evidence=ISS]
[GO:0009340 "DNA topoisomerase IV complex" evidence=ISS]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR005737 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
Gene3D:3.40.50.670 KO:K02622 ProtClustDB:PRK05559
TIGRFAMs:TIGR01055 HSSP:P06982 OMA:GNVCVAR PIR:G82078
RefSeq:NP_232061.1 ProteinModelPortal:Q9KPD9 SMR:Q9KPD9
DNASU:2612973 GeneID:2612973 KEGG:vch:VC2431 PATRIC:20083881
GO:GO:0009340 Uniprot:Q9KPD9
Length = 626
Score = 159 (61.0 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 51/186 (27%), Positives = 88/186 (47%)
Query: 430 IVNPTFDSQTKENMTLQKGSFGSTCVPKLEDANDAGTKNSIDCT-LILTEGDSAKSLAVS 488
I N + + + +K + G KL D T ++ T L L EGDSA A
Sbjct: 373 IANAHSRMRASKKVVRKKIASGPALPGKLTDC----TVQDLNRTELFLVEGDSAGGSAKQ 428
Query: 489 GLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTL 548
R+ V PLRGK+LN E + Q+L + E++++ LG+ ++++ L
Sbjct: 429 ARD---REFQAVMPLRGKILNTWEVSADQVLASQEVHDISVALGIDPDS-----DNLEAL 480
Query: 549 RYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYS 608
RYG++ I+ D D DG HI L+ ++ L++ + + P+ + +E FY+
Sbjct: 481 RYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKEV--FYA 538
Query: 609 LPEFEE 614
L + E+
Sbjct: 539 LDDQEK 544
Score = 90 (36.7 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 53/211 (25%), Positives = 89/211 (42%)
Query: 158 EDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF--VVETSCSEYK 215
E+KV+GV +I L ++++ + +GG +G G + N S + V Y+
Sbjct: 81 EEKVSGV--ELILCKLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVAVRRDGQVYE 138
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITR-RAYDA 274
+F+ D ++++T G ++ T + F PD TK+ S + + LI RA
Sbjct: 139 IAFEH--GDKVTELTVTGT-CGRRNTGTSVHFWPD-TKY-FDSPNFSVSRLINNLRAKAV 193
Query: 275 AASTKDV----KVFLNGEK-LPVKNFQDY----VKLYTDRQDEDGDPVKIIYENVNPRWE 325
++ KV N + L +DY VK YT +E + + W
Sbjct: 194 LCPGLEIIFTDKVNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEPFTG-EFTAQTEAATWA 252
Query: 326 VAIAPSDRGFQQVSFVNSIATTKGGRHVDAV 356
V P S+VN I T +GG HV+ +
Sbjct: 253 VIWLPEGGELITESYVNLIPTAQGGTHVNGL 283
Score = 52 (23.4 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 12/56 (21%), Positives = 32/56 (57%)
Query: 108 IKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTG 163
I++ ++ + ++ V ++G+G+PV H +EK+ +I L ++++ + +G
Sbjct: 55 IQVILHAD-QSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSG 109
>TAIR|locus:2031050 [details] [associations]
symbol:AT1G49980 species:3702 "Arabidopsis thaliana"
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0016020 "membrane" evidence=IDA]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 EMBL:CP002684 GO:GO:0016020 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100 SUPFAM:SSF100879
KO:K03511 OMA:VHVDCDA HOGENOM:HOG000082709 EMBL:AY508701
IPI:IPI00540157 RefSeq:NP_175420.3 UniGene:At.43723 HSSP:Q97W02
ProteinModelPortal:Q6JDV7 SMR:Q6JDV7 EnsemblPlants:AT1G49980.1
GeneID:841422 KEGG:ath:AT1G49980 TAIR:At1g49980 InParanoid:Q6JDV7
PhylomeDB:Q6JDV7 ProtClustDB:CLSN2681525 Genevestigator:Q6JDV7
Uniprot:Q6JDV7
Length = 671
Score = 176 (67.0 bits), Expect = 5.9e-11, Sum P(3) = 5.9e-11
Identities = 67/252 (26%), Positives = 125/252 (49%)
Query: 1901 AVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAK 1960
A S DE Y+D +++ +E L+ + A LR ++ ETG TCS G +N+L A++ + K
Sbjct: 196 AGSLDEAYLDITEVCRERGLSGGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINK 255
Query: 1961 PNGQFHLTPQ--IISDFMLNIPLSDLPGVGHSLLFKL-NSLGAQTCGDL-QNISLK-RLQ 2015
PNGQF L + F+ +P+ + G+G L ++LG +TC ++ Q SL L
Sbjct: 256 PNGQFVLQNDRSTVMTFVSFLPVRKIGGIGKVTEHILKDALGIKTCEEMVQKGSLLYALF 315
Query: 2016 NEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVE 2075
++ L++ G + ++ RKS+S+E + + + + + L +LA +
Sbjct: 316 SQSSADFFLSVGLGLGGTNTPQV---RSRKSISSERTFAAT-GDERLLYSKLDELAEMLS 371
Query: 2076 KRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVC--DYITKSSSLPIYERPLIITYF 2133
+++ + + +TLKL S E R + L C D I K ++ + + L ++
Sbjct: 372 HDMKKEGLTARTLTLKLKTASFEI-RSRAVSLQRYTCSSDDILKHAT-KLLKAELPVSVR 429
Query: 2134 LLLVRSAEAPRE 2145
L+ +R ++ E
Sbjct: 430 LIGLRMSQFVEE 441
Score = 63 (27.2 bits), Expect = 5.9e-11, Sum P(3) = 5.9e-11
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 1617 MHIDMDCFFVSVGIRHHPELQDEPVAV 1643
+H+DMD F+ +V P ++ +P+AV
Sbjct: 106 LHVDMDAFYAAVETLSDPSIKGKPMAV 132
Score = 56 (24.8 bits), Expect = 5.9e-11, Sum P(3) = 5.9e-11
Identities = 22/73 (30%), Positives = 35/73 (47%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESF 1738
R++G+ M A K CP+L VP DF Y S + + + A SL +E++
Sbjct: 146 RKFGVRAAMPGFIARKLCPDLIFVPVDFTKYTHYSDLTRKVFRNYDPHFIAGSL--DEAY 203
Query: 1739 LNALPEDIRQEVL 1751
L+ + E R+ L
Sbjct: 204 LD-ITEVCRERGL 215
Score = 40 (19.1 bits), Expect = 9.1e-08, Sum P(2) = 9.1e-08
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 241 DFTKITFTPDLTKFKMTSLDKDMV 264
DFTK T DLT+ + D +
Sbjct: 172 DFTKYTHYSDLTRKVFRNYDPHFI 195
>TAIR|locus:2146698 [details] [associations]
symbol:GYRB2 "DNA GYRASE B2" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006259 "DNA metabolic process" evidence=ISS] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IEA;ISS;IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IBA] [GO:0003916 "DNA topoisomerase
activity" evidence=IGI] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005694 GO:GO:0007059 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 EMBL:AL391716
GO:GO:0009330 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
EMBL:AY039521 EMBL:AY142041 IPI:IPI00527008 IPI:IPI00537479
RefSeq:NP_568133.1 RefSeq:NP_850762.1 UniGene:At.10083
ProteinModelPortal:Q94BZ7 SMR:Q94BZ7 STRING:Q94BZ7 PaxDb:Q94BZ7
PRIDE:Q94BZ7 EnsemblPlants:AT5G04130.1 GeneID:830291
KEGG:ath:AT5G04130 GeneFarm:4066 TAIR:At5g04130 eggNOG:COG0187
HOGENOM:HOG000075155 InParanoid:Q94BZ7 KO:K02470 OMA:IGKNEYN
PhylomeDB:Q94BZ7 ProtClustDB:CLSN2689450 Genevestigator:Q94BZ7
GermOnline:AT5G04130 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
PROSITE:PS50880 Uniprot:Q94BZ7
Length = 732
Score = 169 (64.5 bits), Expect = 7.2e-11, Sum P(4) = 7.2e-11
Identities = 56/181 (30%), Positives = 86/181 (47%)
Query: 447 KGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPL 503
K S+ +P KL D + + S + + EGDSA G GRD+ + PL
Sbjct: 490 KSVLKSSSLPGKLADCSSTDPEVS---EIFIVEGDSA-----GGSAKQGRDRRFQAILPL 541
Query: 504 RGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMK--TLRYGRLMIMTDQDQ 561
RGK+LN+ + +N EI NL ILGL K ED K LRY +++I+TD D
Sbjct: 542 RGKILNIERKDEAAMYKNEEIQNL--ILGLGLGVKG---EDFKKENLRYHKIIILTDADV 596
Query: 562 DGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTN 621
DG+HI+ L++ F L + + P+ K + + Y + + K+ T+N
Sbjct: 597 DGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKNAQYCY---DDADLKKITSN 653
Query: 622 W 622
+
Sbjct: 654 F 654
Score = 91 (37.1 bits), Expect = 7.2e-11, Sum P(4) = 7.2e-11
Identities = 71/291 (24%), Positives = 120/291 (41%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHK-DEKMFVP 141
GL+ + EIL NA D Q + + ++ + ++SV +NG+GIP H +K +
Sbjct: 120 GLHHLVYEILDNAIDEAQAGYASK-VDVVLHAD-GSVSVVDNGRGIPTDLHPATKKSSLE 177
Query: 142 TMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIF 201
T+ LT + + FG TSS Y+ V+GG +G G + N
Sbjct: 178 TV-----LTVLHAGGK------------FGG--TSSGYS-----VSGGLHGVGLSVVNAL 213
Query: 202 SSKFVVET--SCSEYKKSFKQVWK-DNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTS 258
S V E+K+++ + ++ P G+K T I F PD F T+
Sbjct: 214 SEALEVSVWRDGMEHKQNYSRGKPITTLTCRVLPLESKGTKG--TSIRFWPDKEVFT-TA 270
Query: 259 LDKDMVDLITRRAYDAAASTKDVKVFLNGEKL-PVKN-FQDY-----VKLYTDRQDEDGD 311
++ D + I R + A V + L E P K + +Y + Y + D +
Sbjct: 271 IEFDH-NTIAGRIRELAFLNPKVTISLKKEDDDPEKTQYSEYSFAGGLTEYVSWLNTDKN 329
Query: 312 PVKIIY---ENVNPRW-EVAIAPSDRGFQQ--VSFVNSIATTKGGRHVDAV 356
P+ + +N +VA+ + + + NSI T GG H++ V
Sbjct: 330 PIHDVLGFRREINGATVDVALQWCSDAYSDTMLGYANSIRTIDGGTHIEGV 380
Score = 42 (19.8 bits), Expect = 7.2e-11, Sum P(4) = 7.2e-11
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 411 MALKPFQVKNHIWIFINCLIVNPTFDSQTKENM 443
++L V+ + ++ + NP F+ QTK +
Sbjct: 403 ISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRL 435
Score = 39 (18.8 bits), Expect = 7.2e-11, Sum P(4) = 7.2e-11
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 22 KKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGS 55
++ T + S E+I Q L+ + RP YIGS
Sbjct: 83 QETTTSKGYSSEQI-QVLEGLDPVRKRPGMYIGS 115
Score = 37 (18.1 bits), Expect = 9.3e-06, Sum P(3) = 9.3e-06
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 206 VVETSCSEYKKSFKQVWKDNMSKVTSPEIKS 236
+V+ S EY F ++ D + + S + +
Sbjct: 443 IVDQSVQEYLTEFLELHPDILESIISKSLNA 473
>TAIR|locus:2156309 [details] [associations]
symbol:POLH "Y-family DNA polymerase H" species:3702
"Arabidopsis thaliana" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010224 "response to UV-B" evidence=IMP]
[GO:0042276 "error-prone translesion synthesis" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
[GO:0042732 "D-xylose metabolic process" evidence=RCA]
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 EMBL:CP002688
GO:GO:0003684 GO:GO:0010224 GO:GO:0003887 GO:GO:0042276
Gene3D:3.30.1490.100 SUPFAM:SSF100879 HSSP:P96022 KO:K03509
InterPro:IPR017061 PIRSF:PIRSF036603 EMBL:AJ416380 IPI:IPI00537089
RefSeq:NP_568638.2 UniGene:At.19023 SMR:Q8H2D5 IntAct:Q8H2D5
STRING:Q8H2D5 EnsemblPlants:AT5G44740.2 GeneID:834503
KEGG:ath:AT5G44740 TAIR:At5g44740 InParanoid:Q8H2D5 OMA:CPLRYGT
ProtClustDB:CLSN2680435 Genevestigator:Q8H2D5 Uniprot:Q8H2D5
Length = 672
Score = 158 (60.7 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
Identities = 49/172 (28%), Positives = 82/172 (47%)
Query: 1929 LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVG 1988
LR+ + KET TCS G NK+ A+LA+ KP Q + + + + ++P+ + +G
Sbjct: 195 LRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQELLSSLPIKKMKQLG 254
Query: 1989 HSLLFKLNS-LGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSV 2047
L L + LG T GDL S +LQ G G L+ RG +E+ KS
Sbjct: 255 GKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGISGEEVQGRLLPKSH 314
Query: 2048 SAEVNY-GIR-FQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSA 2097
+ + G R ++ ++ +L QL+ E+ +RL + K I L + ++
Sbjct: 315 GSGKTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQNKRIASTLTLHAS 366
Score = 88 (36.0 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 1607 PSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
P S+ VI H+DMDCF+V V R PEL+ P AV
Sbjct: 6 PEASDAR-VIAHVDMDCFYVQVEQRKQPELRGLPSAV 41
Score = 40 (19.1 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 1893 SSESKIVSAVSCDEMYVDCSQLLQ-ELSLTPLQFASY 1928
+S++++++ V D YV Q Q EL P Y
Sbjct: 8 ASDARVIAHVDMDCFYVQVEQRKQPELRGLPSAVVQY 44
>TIGR_CMR|SPO_1253 [details] [associations]
symbol:SPO_1253 "DNA topoisomerase IV, B subunit"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR005737
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:CP000031 GenomeReviews:CP000031_GR Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 OMA:GFIQSYC TIGRFAMs:TIGR01055
RefSeq:YP_166498.1 ProteinModelPortal:Q5LU07 GeneID:3192730
KEGG:sil:SPO1253 PATRIC:23375809 Uniprot:Q5LU07
Length = 652
Score = 178 (67.7 bits), Expect = 2.0e-10, Sum P(4) = 2.0e-10
Identities = 54/179 (30%), Positives = 90/179 (50%)
Query: 440 KENMTLQKGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK- 497
+E T +K + +P KL D + A ++ + L + EGDSA G + RD+
Sbjct: 403 QEKETQRKTATKKLRLPGKLVDCS-ATSREGTE--LFIVEGDSA-----GGSAKMARDRK 454
Query: 498 -YGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIM 556
+ PLRGK+LNV A ++ N EI++L + LG+ ++ V+D LRY +++IM
Sbjct: 455 TQALLPLRGKILNVLGAASSKLGSNQEISDLTQALGVGLGTRFN-VDD---LRYDKIIIM 510
Query: 557 TDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEW 615
TD D DG+HI L++ F ++ L P+ + T+ + + E +EW
Sbjct: 511 TDADVDGAHIAALLMTFFFTQMRPMIDTGHLYLACPPLYRLTQGAKRVYCLDEAERDEW 569
Score = 61 (26.5 bits), Expect = 2.0e-10, Sum P(4) = 2.0e-10
Identities = 44/198 (22%), Positives = 75/198 (37%)
Query: 173 LLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSP 232
L ++ + + +GG +G GA + N S VV+ + K ++Q + +
Sbjct: 107 LHAGGKFSGKAYQTSGGLHGVGASVVNALSDSMVVQVARD--KLLYEQRFSRGLPLGPIQ 164
Query: 233 EIKSGSKDDFTKITFTPDLT-----KFKMTSLDKDM---------VDLITRRAYDAAAST 278
+I + T +TF D +FK L K + V++ + A D +
Sbjct: 165 QIGAAPNRRGTTVTFHADEEIFGHHRFKPARLFKSIRSKAYLFSGVEIRWKSAIDDGETP 224
Query: 279 KDVKV-FLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNP---RWEVAIAPSDRG 334
+ F G +K Y + Q G V + P W + PS G
Sbjct: 225 TEATFHFPGGLADYLKETLGKASTYAE-QPFAGT-VDFTEKFNTPGKVEWAINWTPSRDG 282
Query: 335 FQQVSFVNSIATTKGGRH 352
F Q S+ N++ T +GG H
Sbjct: 283 FIQ-SYCNTVPTPEGGTH 299
Score = 52 (23.4 bits), Expect = 2.0e-10, Sum P(4) = 2.0e-10
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEH 133
L+ + E+L N+ D N I++ ++ + ++V +NG+GIPV H
Sbjct: 44 LHHMVAEVLDNSMDEAVAG-FANRIEVELHADY-ALTVRDNGRGIPVDPH 91
Score = 42 (19.8 bits), Expect = 2.0e-10, Sum P(4) = 2.0e-10
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 426 INCLIVNPTFDSQTKENM 443
++C I P F QTK+ +
Sbjct: 339 VSCFIREPEFVGQTKDRL 356
Score = 37 (18.1 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 124 NGKGIPVVEHKDEKMF 139
N +G V H DE++F
Sbjct: 171 NRRGTTVTFHADEEIF 186
>UNIPROTKB|F1MZ79 [details] [associations]
symbol:POLH "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010225 "response to UV-C" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
Gene3D:3.30.1490.100 SUPFAM:SSF100879 OMA:SPPLTML
InterPro:IPR017061 PIRSF:PIRSF036603 GeneTree:ENSGT00530000062942
EMBL:DAAA02055099 IPI:IPI00691559 Ensembl:ENSBTAT00000007900
Uniprot:F1MZ79
Length = 710
Score = 177 (67.4 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 48/169 (28%), Positives = 82/169 (48%)
Query: 1929 LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVG 1988
+R I ++TG CS G NK+ A+LA KPN Q ++ + +P+S + +G
Sbjct: 199 MRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFNQVPISKIRNLG 258
Query: 1989 HSL-LFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSV 2047
L + LG + G+L S +LQ+ G +NG LY CRG + + K++
Sbjct: 259 GKLGASVIEILGVEYMGELTQFSEPQLQSHFGERNGSWLYAMCRGIEHDPVKPRPITKTL 318
Query: 2048 SAEVNY-G-IRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMV 2094
N+ G +++ +L QLA E+E+RL + + + +L+V
Sbjct: 319 GCSKNFPGKTALSTRDQVQWWLLQLAQELEERLIKDRNANDRVATQLVV 367
Score = 66 (28.3 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 1615 VIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
V+ +DMDCF V V R +P L+++P AV
Sbjct: 8 VVALVDMDCF-VQVEQRQNPHLRNKPCAV 35
Score = 47 (21.6 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 20/78 (25%), Positives = 35/78 (44%)
Query: 1847 EERHLNPIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDE 1906
+ + L P ++L + H GK T + +A E++ + S ++ S DE
Sbjct: 66 DAKKLCPDLLLAQIRELH-GKANLTKYRDASMEVMEVM---------SRFAVMERGSIDE 115
Query: 1907 MYVDCSQLLQELSLTPLQ 1924
Y+D + +QE L LQ
Sbjct: 116 AYLDLTSAVQE-RLQKLQ 132
Score = 47 (21.6 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 22/98 (22%), Positives = 44/98 (44%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESF 1738
R +G+ M+ A K CP+L + +E+ + NL ++E + + + +
Sbjct: 54 RAFGVTRNMWADDAKKLCPDLLLAQI-----REL-HGKANLTKYRDASMEVMEVMSRFAV 107
Query: 1739 LNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDII 1776
+ I + LD S Q L + QN +P++ D++
Sbjct: 108 MER--GSIDEAYLDLTSAVQERLQKLQN--QPISADLL 141
Score = 39 (18.8 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 1634 PELQDEPVAVAHGKGNSSKVRE 1655
P+L + HGK N +K R+
Sbjct: 72 PDLLLAQIRELHGKANLTKYRD 93
>UNIPROTKB|A8IIG8 [details] [associations]
symbol:TOP3 "DNA gyrase subunit B-like protein"
species:3055 "Chlamydomonas reinhardtii" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
ProtClustDB:CLSN2689450 Gene3D:3.40.50.670 EMBL:DS496117
RefSeq:XP_001690535.1 UniGene:Cre.5744 ProteinModelPortal:A8IIG8
STRING:A8IIG8 EnsemblPlants:EDP05794 GeneID:5716144
KEGG:cre:CHLREDRAFT_114600 BioCyc:CHLAMY:CHLREDRAFT_114600-MONOMER
Uniprot:A8IIG8
Length = 649
Score = 165 (63.1 bits), Expect = 2.7e-10, Sum P(5) = 2.7e-10
Identities = 46/155 (29%), Positives = 78/155 (50%)
Query: 452 STCVPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPLRGKLLN 509
ST KL D N + + + EGDSA G RD+ + PL+GK+LN
Sbjct: 407 STLPGKLADCTST---NREETEIYIVEGDSA-----GGSAKQARDRRFQAILPLKGKILN 458
Query: 510 VREAT--HKQILENAEINNLVKILGLQYSKKYTT-VEDMKTLRYGRLMIMTDQDQDGSHI 566
V T ++ + +N EI+NL+ LG + + + K L YG+++++TD D DG+HI
Sbjct: 459 VERLTDANELMYKNTEISNLIA-LGYERTVGVRSRCHAFKLLLYGKIVVLTDADVDGAHI 517
Query: 567 KGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAR 601
+ L++ F+ + P L + + P+ K + +
Sbjct: 518 RTLLLTFLFRHRPQLFAAGRVYVAVPPLYKVERGK 552
Score = 76 (31.8 bits), Expect = 2.7e-10, Sum P(5) = 2.7e-10
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEH 133
GL+ + E++ NA D Q + +++ V+ + +SV +NG+GIPV H
Sbjct: 24 GLHHLIWEVVDNAVDEVQAG-HASAVEVDVDLSSGWVSVVDNGRGIPVDVH 73
Score = 48 (22.0 bits), Expect = 2.7e-10, Sum P(5) = 2.7e-10
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 185 KVTGGRNGYGAKLCNIFSSKFVVET--SCSEYKKSFKQ 220
KV+GG +G G + N SS+ V + S Y + + +
Sbjct: 102 KVSGGLHGVGISVVNALSSELEVTVWRAGSRYSQRYSR 139
Score = 45 (20.9 bits), Expect = 2.7e-10, Sum P(5) = 2.7e-10
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 340 FVNSIATTKGGRHVDAV 356
F NSI T GG H++ +
Sbjct: 273 FANSIHTVDGGTHMEGL 289
Score = 40 (19.1 bits), Expect = 2.7e-10, Sum P(5) = 2.7e-10
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 418 VKNHIWIFINCLIVNPTFDSQTKENM 443
V+ + ++ + NP F+ QTK +
Sbjct: 319 VREGLGAVVSVKVPNPEFEGQTKTRL 344
>UNIPROTKB|B4DG64 [details] [associations]
symbol:POLH "DNA polymerase eta" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006290 "pyrimidine dimer repair" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0006301
GO:GO:0003887 GO:GO:0006290 Gene3D:3.30.1490.100 SUPFAM:SSF100879
EMBL:AL353602 EMBL:AL355802 UniGene:Hs.655467 HGNC:HGNC:9181
HOVERGEN:HBG053633 InterPro:IPR017061 PIRSF:PIRSF036603
EMBL:AK294430 IPI:IPI00646080 SMR:B4DG64 STRING:B4DG64
Ensembl:ENST00000535400 Uniprot:B4DG64
Length = 651
Score = 182 (69.1 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 53/194 (27%), Positives = 91/194 (46%)
Query: 1905 DEMYVDCSQLLQELSLTP-LQFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNG 1963
D + +D + +L LT +R I +ETG CS G NK+ A+LA KPN
Sbjct: 114 DSLQID-NLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNR 172
Query: 1964 QFHLTPQIISDFMLNIPLSDLPGVGHSL-LFKLNSLGAQTCGDLQNISLKRLQNEVGNKN 2022
Q ++ + +P+ + +G L + LG + G+L + +LQ+ G KN
Sbjct: 173 QTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKN 232
Query: 2023 GLTLYKHCRGEDDKELTFEHQRKSVSAEVNY-G-IRFQNNQEMETFLKQLAGEVEKRLEE 2080
G LY CRG + + K++ N+ G ++++ +L QLA E+E+RL +
Sbjct: 233 GSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTK 292
Query: 2081 VKMKGKCITLKLMV 2094
+ + +L+V
Sbjct: 293 DRNDNDRVATQLVV 306
Score = 55 (24.4 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 21/69 (30%), Positives = 31/69 (44%)
Query: 1856 ILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLL 1915
+LL +R GK T + EA E++ + S ++ S DE YVD + +
Sbjct: 13 LLLAQVRESRGKANLTKYREASVEVMEIM---------SRFAVIERASIDEAYVDLTSAV 63
Query: 1916 QELSLTPLQ 1924
QE L LQ
Sbjct: 64 QE-RLQKLQ 71
Score = 37 (18.1 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 1634 PELQDEPVAVAHGKGNSSKVRE 1655
P+L V + GK N +K RE
Sbjct: 11 PDLLLAQVRESRGKANLTKYRE 32
>UNIPROTKB|O69998 [details] [associations]
symbol:O69998 "Putative DNA gyrase subunit B"
species:100226 "Streptomyces coelicolor A3(2)" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 GenomeReviews:AL645882_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 KO:K02470
Gene3D:3.40.50.670 HOGENOM:HOG000075154 ProtClustDB:PRK05559
HSSP:P06982 EMBL:AL939125 PIR:T35196 RefSeq:NP_629945.1
ProteinModelPortal:O69998 GeneID:1101264 KEGG:sco:SCO5822
PATRIC:23741544 OMA:DSEMIIS Uniprot:O69998
Length = 707
Score = 171 (65.3 bits), Expect = 5.7e-10, Sum P(4) = 5.7e-10
Identities = 42/131 (32%), Positives = 73/131 (55%)
Query: 446 QKGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLR 504
+K + S+ +P KL D S L + EGDSA L + L + + P+R
Sbjct: 456 RKTALESSSLPAKLADCRSDDVDRS---ELFIVEGDSA--LGTAKLAR-NSEFQALLPIR 509
Query: 505 GKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGS 564
GK+LNV++++ +L+NAE +++++G + + D+ RYG++++MTD D DGS
Sbjct: 510 GKILNVQKSSVTDMLKNAECGAIIQVIGAGSGRTF----DIDAARYGKIIMMTDADVDGS 565
Query: 565 HIKGLIINFIH 575
HI+ L++ H
Sbjct: 566 HIRTLLLTLFH 576
Score = 61 (26.5 bits), Expect = 5.7e-10, Sum P(4) = 5.7e-10
Identities = 21/52 (40%), Positives = 26/52 (50%)
Query: 307 DEDGD--PVKIIYE---NVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHV 353
DEDG P ++ + +V RW + R SFVN IAT KGG HV
Sbjct: 294 DEDGQMTPSEVTRDLGVDVALRWGTGYDTTVR-----SFVNIIATPKGGTHV 340
Score = 50 (22.7 bits), Expect = 5.7e-10, Sum P(4) = 5.7e-10
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPV-VEHK 134
GL EI+ N+ D + + I++ ++ + + + V +NG+GIPV VE K
Sbjct: 52 GLMHCLWEIIDNSVD-EALGGYCDHIEVILHDDAS-VEVRDNGRGIPVDVEPK 102
Score = 49 (22.3 bits), Expect = 5.7e-10, Sum P(4) = 5.7e-10
Identities = 15/65 (23%), Positives = 28/65 (43%)
Query: 187 TGGRNGYGAKLCNIFSSKFVVETSCSEYKK--SFKQVWKDNMSKVTSPEIKSGSKDDFTK 244
+GG +G GA + N S++ +E + SF++ +K P+ K + K
Sbjct: 129 SGGLHGVGASVVNALSARLDIEVDLGGHTHAISFRRGVPGTFAKA-GPDAKFEAGSGLRK 187
Query: 245 ITFTP 249
+ P
Sbjct: 188 VKKVP 192
Score = 40 (19.1 bits), Expect = 5.4e-09, Sum P(4) = 5.4e-09
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 42 LEHILLRPDTYIGSVEP--ITETMW 64
LE + RP YIGS + + +W
Sbjct: 34 LEAVRKRPGMYIGSTDSRGLMHCLW 58
>UNIPROTKB|Q7RHG3 [details] [associations]
symbol:PY04024 "DNA topoisomerase II, putative"
species:73239 "Plasmodium yoelii yoelii" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
Gene3D:3.40.50.670 HSSP:P06982 EMBL:AABL01001206 RefSeq:XP_724272.1
ProteinModelPortal:Q7RHG3 STRING:Q7RHG3 GeneID:3789597
KEGG:pyo:PY04024 EuPathDB:PlasmoDB:PY04024 Uniprot:Q7RHG3
Length = 930
Score = 109 (43.4 bits), Expect = 6.7e-10, Sum P(6) = 6.7e-10
Identities = 33/91 (36%), Positives = 50/91 (54%)
Query: 446 QKGSFGSTCVP-KLEDA-NDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPL 503
+ + ST +P KL D +D +KN I + EGDSA A S R+ + PL
Sbjct: 585 KNNQYYSTILPGKLVDCISDDISKNEI----FIVEGDSA---AGSAKQARNREIQAILPL 637
Query: 504 RGKLLNVREA-THKQILENAEINNLVKILGL 533
+GK+LNV + +K+I EN E+ +L+ +GL
Sbjct: 638 KGKILNVEKIKNNKKIFENIELKSLITAIGL 668
Score = 86 (35.3 bits), Expect = 6.7e-10, Sum P(6) = 6.7e-10
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 547 TLRYGRLMIMTDQDQDGSHIKGLIINFIH 575
+LRYG+++IMTD D DG HI L++ F++
Sbjct: 700 SLRYGKIIIMTDADVDGEHICILLLTFLY 728
Score = 83 (34.3 bits), Expect = 6.7e-10, Sum P(6) = 6.7e-10
Identities = 20/63 (31%), Positives = 40/63 (63%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPV-VEHKDEKMFVP 141
GL++I EI+ NA D + + + N IK+ ++ + +I++ +NG+GIP + K +K +
Sbjct: 142 GLHQILFEIVDNAVD-EYNNHECNQIKVIIHND-ESITIEDNGRGIPCDIHEKTKKSALE 199
Query: 142 TMI 144
T++
Sbjct: 200 TVL 202
Score = 60 (26.2 bits), Expect = 6.7e-10, Sum P(6) = 6.7e-10
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 338 VSFVNSIATTKGGRHVDAV 356
+SFVN++ T GG HVDA+
Sbjct: 458 LSFVNNVNTIDGGTHVDAM 476
Score = 50 (22.7 bits), Expect = 6.7e-10, Sum P(6) = 6.7e-10
Identities = 29/123 (23%), Positives = 52/123 (42%)
Query: 177 SNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKS 236
+N N ++ K + G +G G + N S+ F+ + K ++ K + K + +
Sbjct: 265 TNENLQKYKYSSGLHGVGLSVSNALST-FMKVNVFRDNKIYNIELEKGKVVKELNVQ-DC 322
Query: 237 GSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQ 296
K T+I + PD T FK T++ K + I R + A + + E+ K
Sbjct: 323 PIKKRGTQIHYKPDNTIFK-TNI-KHNSEFIKNRLHQLAYLNDKLTFYFYDERNSNKGNS 380
Query: 297 DYV 299
D V
Sbjct: 381 DKV 383
Score = 40 (19.1 bits), Expect = 6.5e-06, Sum P(6) = 6.5e-06
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 86 KIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKG 127
K D+ +N N+++ K K V QET ++ NN KG
Sbjct: 210 KFLDDD-INMIVNEEKG-KQKKTKKEV-QETGNSNISNNSKG 248
Score = 37 (18.1 bits), Expect = 6.7e-10, Sum P(6) = 6.7e-10
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 733 VNGEIAILDDDKLEITE 749
+N +A+LD DK +I E
Sbjct: 787 LNELLALLDMDKAQILE 803
>TIGR_CMR|APH_0716 [details] [associations]
symbol:APH_0716 "DNA gyrase, B subunit" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003916 "DNA topoisomerase
activity" evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 GO:GO:0006261 EMBL:CP000235
GenomeReviews:CP000235_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939
RefSeq:YP_505297.1 ProteinModelPortal:Q2GK04 SMR:Q2GK04
STRING:Q2GK04 GeneID:3930586 KEGG:aph:APH_0716 PATRIC:20950116
BioCyc:APHA212042:GHPM-734-MONOMER Uniprot:Q2GK04
Length = 793
Score = 170 (64.9 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 51/160 (31%), Positives = 80/160 (50%)
Query: 447 KGSFGSTCVP-KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDK--YGVFPL 503
+G+ T +P KL D + + S L + EG+SA G GRD+ V L
Sbjct: 402 RGTLDFTSIPGKLADCQEKSPELS---ELFIVEGNSA-----GGSAKQGRDRRCQAVLSL 453
Query: 504 RGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDG 563
RGK+LNV + L ++EI +L+ +G S D+ +RY +++IMTD D DG
Sbjct: 454 RGKILNVERVGLDRTLSSSEITSLIMAIG---SNIGIGSFDISKVRYHKIIIMTDADVDG 510
Query: 564 SHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREE 603
SHI+ L++ F L+ +L P+ K TK +++
Sbjct: 511 SHIRTLLLTFFFRYMRELIDAGYLYIAQPPLYKLTKHKKD 550
Score = 85 (35.0 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GL+ + E++ NA D N I I + + +ISV +NG+GIP+ H++E +
Sbjct: 34 GLHHMAYEVIDNAIDEALAG-FCNKIDIVIAAD-GSISVTDNGRGIPIDIHEEEGISAAE 91
Query: 143 MIFGHLLTSSNYNDEEDKVTG 163
+I L ++ KV+G
Sbjct: 92 VIMTQLHAGGKFDHNSYKVSG 112
Score = 80 (33.2 bits), Expect = 3.3e-09, Sum P(4) = 3.3e-09
Identities = 49/216 (22%), Positives = 89/216 (41%)
Query: 157 EEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSS--KFVVETSCSEY 214
EE+ ++ +I L ++ KV+GG +G G + N SS + V+ EY
Sbjct: 83 EEEGISAA--EVIMTQLHAGGKFDHNSYKVSGGLHGVGVSVVNALSSWLELVIYKEGREY 140
Query: 215 KKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPD-----LTKFKMTSLDKDMVDLITR 269
F++ K+ + G+K T + F P T F ++L+ + +L
Sbjct: 141 FMRFEEGKAVAPLKMVG---ECGNKKG-TCVRFMPSSDVFSFTDFSYSTLENRIRELSFL 196
Query: 270 RAYDAAASTKDVKV-------FLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNP 322
+ + + S KD++ F N K +V+ Y DR PV I +
Sbjct: 197 NS-NVSISLKDLRESPVLESNFGNVSDAATKGVSLFVE-YLDRNKTPVTPV-ITLSGIMS 253
Query: 323 RWEVAIAPS----DRGFQQV-SFVNSIATTKGGRHV 353
+E+++ S D ++ + F N+I +GG H+
Sbjct: 254 GYEISVEVSMCWNDSYYENMLCFTNNIRQREGGTHL 289
Score = 39 (18.8 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 2057 FQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKL 2092
F N ++++T L L G E+ + K T+++
Sbjct: 670 FMNTRDVQTILSVLDGIENVFTEDTVLTAKDCTIRV 705
Score = 37 (18.1 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 418 VKNHIWIFINCLIVNPTFDSQTKENM 443
V+ + ++ + +P F SQTK+ +
Sbjct: 322 VREGLTCVLSIKMPDPRFSSQTKDKL 347
>UNIPROTKB|J3KSW2 [details] [associations]
symbol:POLI "DNA polymerase iota" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
Gene3D:3.30.1490.100 SUPFAM:SSF100879 EMBL:AC093462 HGNC:HGNC:9182
ChiTaRS:POLI ProteinModelPortal:J3KSW2 Ensembl:ENST00000579434
Uniprot:J3KSW2
Length = 637
Score = 166 (63.5 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 62/227 (27%), Positives = 108/227 (47%)
Query: 1875 EAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCS-QLLQELSLTPL---QFASYLR 1930
E + ++ V+ ++ S E V+ VS +Y + S LL L + L Q A+ +R
Sbjct: 49 ENFVDLTEMVEKRLQQLQSDELSAVT-VS-GHVYNNQSINLLDVLHIRLLVGSQIAAEMR 106
Query: 1931 ETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIP-LSDLPGVGH 1989
E + + G T G SNKL A+L + KPN Q L P+ + ++ + ++PG+G+
Sbjct: 107 EAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGY 166
Query: 1990 SLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSA 2049
L +LG + DLQ S K L+ E+G + K GED+ + +S S
Sbjct: 167 KTAKCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSE 226
Query: 2050 EVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKG-KCITLKLMVR 2095
E ++ + + E + +++L + L V G K T++L++R
Sbjct: 227 EDSFK-KCSSEVEAKNKIEELLASL---LNRVCQDGRKPHTVRLIIR 269
Score = 64 (27.6 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 22/71 (30%), Positives = 35/71 (49%)
Query: 1687 MFVGHALKKCPNLKIVP-YDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALPED 1745
M V A +KCP L +V D Y+E+SY + L+ + +E + N L + E
Sbjct: 1 MNVRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEK 60
Query: 1746 IRQEVL-DDLS 1755
Q++ D+LS
Sbjct: 61 RLQQLQSDELS 71
>UNIPROTKB|P0C5C5 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:1773
"Mycobacterium tuberculosis" [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
[GO:0046982 "protein heterodimerization activity" evidence=IPI]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005886 GO:GO:0005524 GO:GO:0005737
GO:GO:0040007 GO:GO:0005618 GO:GO:0005694 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0000287
EMBL:BX842572 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 EMBL:L27512 eggNOG:COG0187 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF
ProtClustDB:PRK05644 PIR:S44198 RefSeq:NP_214519.1
RefSeq:NP_334414.1 RefSeq:YP_006513317.1 PDB:2ZJT PDB:3IG0 PDB:3M4I
PDBsum:2ZJT PDBsum:3IG0 PDBsum:3M4I ProteinModelPortal:P0C5C5
SMR:P0C5C5 PRIDE:P0C5C5 EnsemblBacteria:EBMYCT00000001058
EnsemblBacteria:EBMYCT00000070955 GeneID:13315978 GeneID:887081
GeneID:922435 KEGG:mtc:MT0005 KEGG:mtu:Rv0005 KEGG:mtv:RVBD_0005
PATRIC:18121734 TubercuList:Rv0005 HOGENOM:HOG000075154
BindingDB:P0C5C5 ChEMBL:CHEMBL3489 EvolutionaryTrace:P0C5C5
Uniprot:P0C5C5
Length = 675
Score = 155 (59.6 bits), Expect = 6.2e-09, Sum P(3) = 6.2e-09
Identities = 40/120 (33%), Positives = 62/120 (51%)
Query: 457 KLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKY--GVFPLRGKLLNVREAT 514
KL D + S L + EGDSA A SG RD + PLRGK++NV +A
Sbjct: 441 KLADCRSTDPRKS---ELYVVEGDSAGGSAKSG-----RDSMFQAILPLRGKIINVEKAR 492
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
++L+N E+ ++ LG ++ D+ LRY ++++M D D DG HI L++ +
Sbjct: 493 IDRVLKNTEVQAIITALGTGIHDEF----DIGKLRYHKIVLMADADVDGQHISTLLLTLL 548
Score = 84 (34.6 bits), Expect = 6.2e-09, Sum P(3) = 6.2e-09
Identities = 46/199 (23%), Positives = 80/199 (40%)
Query: 165 VPTM--IFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVW 222
+PT+ + L ++ + ++GG +G G + N S++ VE Y+ S QV+
Sbjct: 93 IPTVDVVMTQLHAGGKFDSDAYAISGGLHGVGVSVVNALSTRLEVEIKRDGYEWS--QVY 150
Query: 223 KDNMS---KVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTK 279
+ + K +P K+GS + F D F+ T D + + RR + A K
Sbjct: 151 EKSEPLGLKQGAPTKKTGST-----VRFWADPAVFETTEYD---FETVARRLQEMAFLNK 202
Query: 280 DVKVFLNGEKLPVKNFQDYVKLYTDRQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVS 339
+ + L E++ D V +D + + E+ P +V V
Sbjct: 203 GLTINLTDERVTQDEVVDEV--VSDVAEAPKSASERAAESTAPH-KVKSRTFHYPGGLVD 259
Query: 340 FVNSIATTKGGRHVDAVVD 358
FV I TK H ++VD
Sbjct: 260 FVKHINRTKNAIH-SSIVD 277
Score = 56 (24.8 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
Identities = 18/83 (21%), Positives = 37/83 (44%)
Query: 83 GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPT 142
GL+ + E++ NA D + + + E + V ++G+GIPV H +PT
Sbjct: 41 GLHHLIWEVVDNAVDEAMAG-YATTVNVVL-LEDGGVEVADDGRGIPVATHASG---IPT 95
Query: 143 M--IFGHLLTSSNYNDEEDKVTG 163
+ + L ++ + ++G
Sbjct: 96 VDVVMTQLHAGGKFDSDAYAISG 118
Score = 37 (18.1 bits), Expect = 6.2e-09, Sum P(3) = 6.2e-09
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 42 LEHILLRPDTYIGS 55
LE + RP YIGS
Sbjct: 23 LEAVRKRPGMYIGS 36
>WB|WBGene00017696 [details] [associations]
symbol:polk-1 species:6239 "Caenorhabditis elegans"
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 GO:GO:0003887 EMBL:FO080222 eggNOG:COG0389
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 EMBL:FO080380 GeneTree:ENSGT00530000062942
PIR:S44637 RefSeq:NP_001122692.1 RefSeq:NP_001122693.1
UniGene:Cel.10581 ProteinModelPortal:P34409 SMR:P34409
STRING:P34409 EnsemblMetazoa:F22B7.6a GeneID:176209
KEGG:cel:CELE_F22B7.6 UCSC:F22B7.6b.2 CTD:176209 WormBase:F22B7.6a
WormBase:F22B7.6b HOGENOM:HOG000082711 InParanoid:P34409 KO:K03511
OMA:FMLAKIC NextBio:891590 Uniprot:P34409
Length = 596
Score = 137 (53.3 bits), Expect = 6.8e-09, Sum P(4) = 6.8e-09
Identities = 45/173 (26%), Positives = 80/173 (46%)
Query: 1929 LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLT--PQIISDFMLNIPLSDLPG 1986
+R + + TG TCS G SN + A++ + KPNGQ+ L I +F+ ++P+ + G
Sbjct: 259 IRFRVEQLTGLTCSAGIASNFMLAKICSDLNKPNGQYVLENDKNAIMEFLKDLPIRKVGG 318
Query: 1987 VGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKS 2046
+G +L ++ QT GD+ N+ + + + G + + +RKS
Sbjct: 319 IGRVCEAQLKAMDIQTVGDM-NLKKNLYPLCFTPLSQESFLRTALGLPGRPSESDPRRKS 377
Query: 2047 VSAEVNYGIRFQNN---QEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRS 2096
+S E + N +E + + L +V K + GK +TLKL + S
Sbjct: 378 ISVERTFSPTSDFNILLEEHQEICRMLEEDVRK---SGIVGGKTVTLKLKLSS 427
Score = 66 (28.3 bits), Expect = 6.8e-09, Sum P(4) = 6.8e-09
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 1679 REYGLGNGM--FVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNE 1736
R +G+ GM F+ + L CP+L IVP ++ Y +VS + ++ +SL +E
Sbjct: 126 RRFGVRAGMPGFISNKL--CPSLTIVPGNYPKYTKVSRQFSQIFMEYDSDVGMMSL--DE 181
Query: 1737 SFLN 1740
+F++
Sbjct: 182 AFID 185
Score = 63 (27.2 bits), Expect = 6.8e-09, Sum P(4) = 6.8e-09
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 1619 IDMDCFFVSVGIRHHPELQDEPVAV 1643
IDMD +F +V +R +P L+ P+AV
Sbjct: 88 IDMDAYFAAVEMRDNPALRTVPMAV 112
Score = 52 (23.4 bits), Expect = 6.8e-09, Sum P(4) = 6.8e-09
Identities = 19/67 (28%), Positives = 33/67 (49%)
Query: 2156 DYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSKL---EHQSKTLATI 2212
D +T+S + + I K L ++ K K E+R +G+++S+L E + K TI
Sbjct: 429 DVLTRSLTPSDVVKSLEDIQKFSLELLEKEKGK--EIRLLGVRLSQLIFEEDEKKRSKTI 486
Query: 2213 DTFFTNK 2219
F+ K
Sbjct: 487 TEFWNEK 493
>UNIPROTKB|H7C263 [details] [associations]
symbol:REV1 "DNA repair protein REV1" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR017961
GO:GO:0003684 GO:GO:0006281 EMBL:AC018690 GO:GO:0003887
Gene3D:3.30.1490.100 HGNC:HGNC:14060 ChiTaRS:REV1
ProteinModelPortal:H7C263 Ensembl:ENST00000438366 Uniprot:H7C263
Length = 97
Score = 148 (57.2 bits), Expect = 8.7e-09, P = 8.7e-09
Identities = 29/56 (51%), Positives = 40/56 (71%)
Query: 2066 FLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREASKFLGHGVCDYITKSSSL 2121
FL L+ E+++RLE MKGK +TLK+MVR AP E +KF GHG+CD I ++ +L
Sbjct: 2 FLLSLSEEIQRRLEATGMKGKRLTLKIMVRKPGAPVETAKFGGHGICDNIARTVTL 57
>FB|FBgn0037141 [details] [associations]
symbol:DNApol-eta "DNApol-eta" species:7227 "Drosophila
melanogaster" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IMP;IDA;NAS] [GO:0019985 "translesion synthesis"
evidence=ISS;NAS;IDA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IMP] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0000724 GO:GO:0003887
GO:GO:0019985 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
HSSP:P96022 InterPro:IPR017061 PIRSF:PIRSF036603 EMBL:AY058771
EMBL:AB049433 EMBL:AB036766 IntAct:Q9GNC0 STRING:Q9GNC0
FlyBase:FBgn0037141 InParanoid:Q9GNC0 OrthoDB:EOG4XPNX1
Uniprot:Q9GNC0
Length = 885
Score = 157 (60.3 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 68/259 (26%), Positives = 110/259 (42%)
Query: 1926 ASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLP 1985
A +R + KETG CS G NK+ A+LA KPN Q L + ++P+ +
Sbjct: 212 AGEVRAAVKKETGYECSAGIAHNKILAKLAAGMNKPNKQTILPLTETASLFDSLPVGKIK 271
Query: 1986 GVGHSL-LFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQR 2044
G+G +LG + G + S LQ + KNG L+ RG D + +T
Sbjct: 272 GLGGKFGEVVCETLGIKFMGQVVKFSEVDLQRKFDEKNGTWLFNISRGIDLEAVTPRFYS 331
Query: 2045 KSVSAEVNYGIRFQNN----QEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEA- 2099
KS+ + R NN + ++ +L +L+ E+ RLE+ ++ ++V+ +
Sbjct: 332 KSIGCCKKFPGR--NNITGLKTLQHWLGELSSEINDRLEKDFIENNRRAKHMVVQYVQDI 389
Query: 2100 -PREASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYI 2158
E + + DY +S + T L S A A KFLG V +
Sbjct: 390 DGEEVASSRSTALRDYDQESIVRLSLDLIKANTKTFLRPGSESALNNAIKFLGISVGKFE 449
Query: 2159 TKSSSL----PMYISQASQ 2173
T SS M+ +QA++
Sbjct: 450 TVSSGQNKLQEMFANQAAK 468
Score = 84 (34.6 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 1615 VIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
V++ +DMDCFF V + HPE ++ P+AV
Sbjct: 17 VVLLVDMDCFFCQVEEKQHPEYRNRPLAV 45
Score = 37 (18.1 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 13/44 (29%), Positives = 17/44 (38%)
Query: 2219 KGKPPDQLNNPRPGPSNSTITPGPSNSTLPPGPSNSTLPPGPSN 2262
K PP + S+S T PSNS + T PS+
Sbjct: 756 KPTPPKKSKKTAGSGSSSYSTAPPSNSITKFFRAKPTQEQAPSD 799
>POMBASE|SPBC16A3.11 [details] [associations]
symbol:eso1 "sister chromatid cohesion protein/DNA
polymerase eta Eso1 fusion protein" species:4896
"Schizosaccharomyces pombe" [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006473
"protein acetylation" evidence=IC] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016407 "acetyltransferase activity"
evidence=ISS] [GO:0019985 "translesion synthesis" evidence=IMP]
[GO:0034087 "establishment of mitotic sister chromatid cohesion"
evidence=IMP] [GO:0034182 "regulation of maintenance of mitotic
sister chromatid cohesion" evidence=TAS] [GO:0043596 "nuclear
replication fork" evidence=IC] InterPro:IPR001126
InterPro:IPR015880 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00355
PomBase:SPBC16A3.11 GO:GO:0046872 GO:GO:0003684 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0000790 GO:GO:0043596
GO:GO:0016746 GO:GO:0034087 GO:GO:0006473 GO:GO:0003887
GO:GO:0019985 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
KO:K03509 EMBL:AB039861 PIR:T39541 RefSeq:NP_596778.1
ProteinModelPortal:O42917 IntAct:O42917 STRING:O42917
EnsemblFungi:SPBC16A3.11.1 GeneID:2539666 KEGG:spo:SPBC16A3.11
OrthoDB:EOG4M0J8V NextBio:20800820 GO:GO:0034182 Uniprot:O42917
Length = 872
Score = 176 (67.0 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 45/179 (25%), Positives = 94/179 (52%)
Query: 1929 LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVG 1988
+R+ I + TCS G N + ++L + + KPN Q LT I D+++++ ++D+ +G
Sbjct: 226 IRDDIYLQLKYTCSAGVSFNPMLSKLVSSRNKPNKQTILTKNAIQDYLVSLKITDIRMLG 285
Query: 1989 HSLLFKL-NSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSV 2047
++ N LG + D+ N+S+ L +++G NG ++ C G D+ E+T + Q KS+
Sbjct: 286 GKFGEEIINLLGTDSIKDVWNMSMDFLIDKLGQTNGPLVWNLCHGIDNTEITTQVQIKSM 345
Query: 2048 SAEVNYGI-RFQNNQEMETFLKQLAGEVEKRLEEVK--MKGKCITLKLMVRSAEAPREA 2103
+ N+ + ++ ++ + + A ++ R E++ + K I L ++ R R +
Sbjct: 346 LSAKNFSQQKVKSEEDAINWFQVFASDLRSRFLELEGMRRPKTICLTVVSRFLRKSRSS 404
Score = 60 (26.2 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 34/168 (20%), Positives = 67/168 (39%)
Query: 1610 SEPEPVIMHIDMDCFFVSV-GIRHHPELQDEPVAVAHGKG----NSSKVREGVDRQAEFD 1664
+ P V+ HID D F+ V +R + P+AV +G N + + R
Sbjct: 23 NSPLRVVAHIDQDAFYAQVESVRLGLD-HSVPLAVQQWQGLIAVNYAARAANISRHETVT 81
Query: 1665 IYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLT 1724
+++ + + + G H + PN + Y+ S + N+I
Sbjct: 82 EAKKKCPELCTAHVKTWKAGESEAKYH---ENPNPNYYKTCLDPYRHESVKILNIIKKHA 138
Query: 1725 LNIEAVSLYTNESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLA 1772
++ S+ +E F+ L D+++ VL++ + + S + N P A
Sbjct: 139 PVVKKASI--DECFIE-LTSDVKRIVLEEYPYLK-IPSEDSNVALPQA 182
Score = 41 (19.5 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 2155 CDYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGI 2195
C Y S S + +A + L F+ N+L +P+E G+
Sbjct: 704 CIYSINSESSLIDQRKAEEALS---FVNNELSSEPIETIGV 741
Score = 39 (18.8 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 875 RDDKMTELNILKKKAP 890
R + + LNI+KK AP
Sbjct: 124 RHESVKILNIIKKHAP 139
>GENEDB_PFALCIPARUM|PFL1915w [details] [associations]
symbol:PFL1915w "dna gyrase subunit b, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=IDA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 EMBL:AE014188 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0020011 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 KO:K02470 Gene3D:3.40.50.670 HOGENOM:HOG000075156
GenomeReviews:AE014188_GR HSSP:P06982 RefSeq:XP_001350789.1
ProteinModelPortal:Q8I528 IntAct:Q8I528 MINT:MINT-1670662
PRIDE:Q8I528 EnsemblProtists:PFL1915w:mRNA GeneID:811435
KEGG:pfa:PFL1915w EuPathDB:PlasmoDB:PF3D7_1239500 OMA:YDERSEN
ProtClustDB:PTZ00109 Uniprot:Q8I528
Length = 1006
Score = 114 (45.2 bits), Expect = 1.8e-08, Sum P(4) = 1.8e-08
Identities = 35/98 (35%), Positives = 53/98 (54%)
Query: 446 QKGSFGSTCVP-KLEDA-NDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPL 503
+ + ST +P KL D +D ++N I + EGDSA A S R+ + PL
Sbjct: 642 KNNQYSSTILPGKLVDCISDDISRNEI----FIVEGDSA---AGSAKQARNREIQAILPL 694
Query: 504 RGKLLNVREA-THKQILENAEINNLVKILGLQ--YSKK 538
+GK+LNV + +K+I EN+E+ +L+ LGL Y K
Sbjct: 695 KGKILNVEKIKNNKRIFENSELKSLITALGLNVNYDNK 732
Score = 107 (42.7 bits), Expect = 1.8e-08, Sum P(4) = 1.8e-08
Identities = 44/181 (24%), Positives = 86/181 (47%)
Query: 79 TYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKM 138
T V GL++I EI+ N+ D + + + N IK+ ++++ +++++ +NG+GIP H+ K
Sbjct: 148 TDVKGLHQILFEIIDNSVD-EYNNFECNTIKVVIHKD-DSVTIEDNGRGIPCDVHEKTKK 205
Query: 139 FVPTMIFGHLLTSSNYNDEE--DKV------TGVVPTMIFGHL--LTSSNYNDEEDKVTG 188
+ L + + + D+E D++ TG T + ++++N N+ +K T
Sbjct: 206 SALETVLTVLHSGAKFFDDEMDDEIDNNMNNTGNTNTSEKNNRDNISNNNNNNNNNKRTK 265
Query: 189 GRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFT 248
+ A+ S V S + SF +V +K+ S E++ G IT
Sbjct: 266 KNSKESAQKYKYSSGLHGVGLSVANALSSFMKVKVFRNNKIYSIELEKGKVTKELTITNC 325
Query: 249 P 249
P
Sbjct: 326 P 326
Score = 100 (40.3 bits), Expect = 4.4e-07, Sum P(4) = 4.4e-07
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 511 REATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLI 570
+ + K L+N+ + + KK V++ TLRYG+++IMTD D DG HI+ L+
Sbjct: 747 KNSKKKSDLKNSRFESTQNNNNILNKKKDILVDN--TLRYGKVIIMTDADVDGEHIRILL 804
Query: 571 INFIH 575
+ F++
Sbjct: 805 LTFLY 809
Score = 68 (29.0 bits), Expect = 1.8e-08, Sum P(4) = 1.8e-08
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 338 VSFVNSIATTKGGRHVDAV 356
+SFVN++ TT GG HVDA+
Sbjct: 515 ISFVNNVNTTDGGTHVDAL 533
Score = 61 (26.5 bits), Expect = 0.00049, Sum P(4) = 0.00049
Identities = 31/123 (25%), Positives = 56/123 (45%)
Query: 176 SSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSK---VTS- 231
+S + ++ K + G +G G + N SS V+ + S ++ K ++K +T+
Sbjct: 267 NSKESAQKYKYSSGLHGVGLSVANALSSFMKVKVFRNNKIYSI-ELEKGKVTKELTITNC 325
Query: 232 PEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLP 291
P K G T+I + PD + FK ++ K DLI R + A + + + E+
Sbjct: 326 PINKRG-----TQIHYKPDSSIFKSST--KHNSDLIKNRIHQLAYLNEKLTFYFYDERSE 378
Query: 292 VKN 294
KN
Sbjct: 379 NKN 381
Score = 37 (18.1 bits), Expect = 1.8e-08, Sum P(4) = 1.8e-08
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 2012 KRLQNEVGNKN 2022
K +QN++ NKN
Sbjct: 885 KNMQNKIKNKN 895
Score = 37 (18.1 bits), Expect = 1.8e-08, Sum P(4) = 1.8e-08
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 2104 SKFLGHGVCDYITKSSSLPIYERPLII-TY 2132
+KF + + D +TK ++ + II TY
Sbjct: 834 NKFFDNSIKDIVTKQFNVTTKQSKFIIHTY 863
>UNIPROTKB|Q8I528 [details] [associations]
symbol:GyrB "Term=DNA gyrase subunit B;evidence=inferred
from direct assay" species:36329 "Plasmodium falciparum 3D7"
[GO:0020011 "apicoplast" evidence=IDA] InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:AE014188
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0020011
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 KO:K02470
Gene3D:3.40.50.670 HOGENOM:HOG000075156 GenomeReviews:AE014188_GR
HSSP:P06982 RefSeq:XP_001350789.1 ProteinModelPortal:Q8I528
IntAct:Q8I528 MINT:MINT-1670662 PRIDE:Q8I528
EnsemblProtists:PFL1915w:mRNA GeneID:811435 KEGG:pfa:PFL1915w
EuPathDB:PlasmoDB:PF3D7_1239500 OMA:YDERSEN ProtClustDB:PTZ00109
Uniprot:Q8I528
Length = 1006
Score = 114 (45.2 bits), Expect = 1.8e-08, Sum P(4) = 1.8e-08
Identities = 35/98 (35%), Positives = 53/98 (54%)
Query: 446 QKGSFGSTCVP-KLEDA-NDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPL 503
+ + ST +P KL D +D ++N I + EGDSA A S R+ + PL
Sbjct: 642 KNNQYSSTILPGKLVDCISDDISRNEI----FIVEGDSA---AGSAKQARNREIQAILPL 694
Query: 504 RGKLLNVREA-THKQILENAEINNLVKILGLQ--YSKK 538
+GK+LNV + +K+I EN+E+ +L+ LGL Y K
Sbjct: 695 KGKILNVEKIKNNKRIFENSELKSLITALGLNVNYDNK 732
Score = 107 (42.7 bits), Expect = 1.8e-08, Sum P(4) = 1.8e-08
Identities = 44/181 (24%), Positives = 86/181 (47%)
Query: 79 TYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKM 138
T V GL++I EI+ N+ D + + + N IK+ ++++ +++++ +NG+GIP H+ K
Sbjct: 148 TDVKGLHQILFEIIDNSVD-EYNNFECNTIKVVIHKD-DSVTIEDNGRGIPCDVHEKTKK 205
Query: 139 FVPTMIFGHLLTSSNYNDEE--DKV------TGVVPTMIFGHL--LTSSNYNDEEDKVTG 188
+ L + + + D+E D++ TG T + ++++N N+ +K T
Sbjct: 206 SALETVLTVLHSGAKFFDDEMDDEIDNNMNNTGNTNTSEKNNRDNISNNNNNNNNNKRTK 265
Query: 189 GRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFT 248
+ A+ S V S + SF +V +K+ S E++ G IT
Sbjct: 266 KNSKESAQKYKYSSGLHGVGLSVANALSSFMKVKVFRNNKIYSIELEKGKVTKELTITNC 325
Query: 249 P 249
P
Sbjct: 326 P 326
Score = 100 (40.3 bits), Expect = 4.4e-07, Sum P(4) = 4.4e-07
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 511 REATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLI 570
+ + K L+N+ + + KK V++ TLRYG+++IMTD D DG HI+ L+
Sbjct: 747 KNSKKKSDLKNSRFESTQNNNNILNKKKDILVDN--TLRYGKVIIMTDADVDGEHIRILL 804
Query: 571 INFIH 575
+ F++
Sbjct: 805 LTFLY 809
Score = 68 (29.0 bits), Expect = 1.8e-08, Sum P(4) = 1.8e-08
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 338 VSFVNSIATTKGGRHVDAV 356
+SFVN++ TT GG HVDA+
Sbjct: 515 ISFVNNVNTTDGGTHVDAL 533
Score = 61 (26.5 bits), Expect = 0.00049, Sum P(4) = 0.00049
Identities = 31/123 (25%), Positives = 56/123 (45%)
Query: 176 SSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSK---VTS- 231
+S + ++ K + G +G G + N SS V+ + S ++ K ++K +T+
Sbjct: 267 NSKESAQKYKYSSGLHGVGLSVANALSSFMKVKVFRNNKIYSI-ELEKGKVTKELTITNC 325
Query: 232 PEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLP 291
P K G T+I + PD + FK ++ K DLI R + A + + + E+
Sbjct: 326 PINKRG-----TQIHYKPDSSIFKSST--KHNSDLIKNRIHQLAYLNEKLTFYFYDERSE 378
Query: 292 VKN 294
KN
Sbjct: 379 NKN 381
Score = 37 (18.1 bits), Expect = 1.8e-08, Sum P(4) = 1.8e-08
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 2012 KRLQNEVGNKN 2022
K +QN++ NKN
Sbjct: 885 KNMQNKIKNKN 895
Score = 37 (18.1 bits), Expect = 1.8e-08, Sum P(4) = 1.8e-08
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 2104 SKFLGHGVCDYITKSSSLPIYERPLII-TY 2132
+KF + + D +TK ++ + II TY
Sbjct: 834 NKFFDNSIKDIVTKQFNVTTKQSKFIIHTY 863
>TIGR_CMR|SO_3899 [details] [associations]
symbol:SO_3899 "DNA topoisomerase IV, B subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR005737
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 TIGRFAMs:TIGR01055 HSSP:P06982 OMA:QARDKEF
RefSeq:NP_719430.1 ProteinModelPortal:Q8EAK3 SMR:Q8EAK3
GeneID:1171539 KEGG:son:SO_3899 PATRIC:23527480 Uniprot:Q8EAK3
Length = 628
Score = 142 (55.0 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 39/141 (27%), Positives = 67/141 (47%)
Query: 474 LILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGL 533
L L EGDSA A R+ + PLRGK+LN E Q+L + E++++ +G
Sbjct: 414 LFLVEGDSAGGSAKQARD---REFQAIMPLRGKILNTWEVDASQVLASQEVHDISVAIGC 470
Query: 534 QYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLRLPFLEEFITP 593
D+ LRYG++ I+ D D DG HI L+ ++ L+ + + P
Sbjct: 471 DPDSN-----DISELRYGKICILADADSDGLHIATLLCALFLKHYRVLVEQGHVYIAMPP 525
Query: 594 IIKATKAREELSFYSLPEFEE 614
+ + ++ +Y+L + E+
Sbjct: 526 LFRIDIGKDV--YYALDDAEK 544
Score = 77 (32.2 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 48/209 (22%), Positives = 83/209 (39%)
Query: 158 EDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKF--VVETSCSEYK 215
E+ + GV +I L ++++ + +GG +G G + N S + V Y
Sbjct: 81 EEGIPGV--ELILTKLHAGGKFSNKNYQFSGGLHGVGISVVNALSRRVEVTVRRDGQVYD 138
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
+F+ +K KVT G ++ T++ F PD + F + + + RA
Sbjct: 139 IAFENGFKVEELKVTGT---CGRRNTGTRVHFWPDTSYFDSPNFSNSKL-IYLLRAKAVL 194
Query: 276 ASTKDVKVFLNGEKLPVKNFQDYVKLYTDR-QDEDGDPVKIIYENVNPRWEVAIAPSD-- 332
+K F N V + Y TD + GD + + E ++ I +D
Sbjct: 195 CPGLRIK-FTNKHTNEVHEWY-YESGLTDYLKAAVGDNIMLPEEPFIGSFKGQIEAADWA 252
Query: 333 -----RGFQQV--SFVNSIATTKGGRHVD 354
G + + S+VN I T GG HV+
Sbjct: 253 ITWLPEGGESINESYVNLIPTPLGGTHVN 281
Score = 57 (25.1 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 37/155 (23%), Positives = 64/155 (41%)
Query: 90 EILVNACDNKQRDPKMNCIKITVNQET-NTISVWNNGKGIPVVEHKDEKMFVPTMIFGHL 148
E++ N+ D + KI V T N++ V ++G+G+PV H +E + +I L
Sbjct: 38 EVIDNSVDEALAG---HATKIEVVLHTDNSLEVTDDGRGMPVDIHPEEGIPGVELILTKL 94
Query: 149 LTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNG--YGAKLCNIFS-SKF 205
++++ + +G + G ++ N +VT R+G Y N F +
Sbjct: 95 HAGGKFSNKNYQFSGG----LHGVGISVVNALSRRVEVTVRRDGQVYDIAFENGFKVEEL 150
Query: 206 VVETSCSEYKKSFK-QVWKDNMSKVTSPEIKSGSK 239
V +C + W D S SP S SK
Sbjct: 151 KVTGTCGRRNTGTRVHFWPDT-SYFDSPNF-SNSK 183
Score = 48 (22.0 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 410 GMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGS 449
G+ L P + + ++ + +P F QTKE ++ ++ S
Sbjct: 304 GIKLSPEDIWDRAAFILSVKMQDPQFAGQTKEKLSSRQSS 343
>WB|WBGene00018721 [details] [associations]
symbol:polh-1 species:6239 "Caenorhabditis elegans"
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100
SUPFAM:SSF100879 KO:K03509 InterPro:IPR017061 PIRSF:PIRSF036603
GeneTree:ENSGT00530000062942 EMBL:FO080224 EMBL:AB244413 PIR:A88395
RefSeq:NP_497480.2 UniGene:Cel.10441 ProteinModelPortal:G5EFY1
SMR:G5EFY1 EnsemblMetazoa:F53A3.2 GeneID:175337
KEGG:cel:CELE_F53A3.2 CTD:175337 WormBase:F53A3.2 OMA:GVGNNKM
NextBio:887718 Uniprot:G5EFY1
Length = 584
Score = 123 (48.4 bits), Expect = 4.9e-08, Sum P(3) = 4.9e-08
Identities = 42/180 (23%), Positives = 82/180 (45%)
Query: 1910 DCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTP 1969
+C++ L L L +R+ I +ET CS G G+NK+ A+L + KP Q +
Sbjct: 182 NCTENL--LLLIAAVTVEQIRQQIHEETQFFCSAGVGNNKMMAKLVCARHKPRQQTLIPW 239
Query: 1970 QIISDFMLNIPLSDLPGVGHSLLFKLNS-LGAQTCGDLQNISLKRLQNEVGNKNGLTLYK 2028
+ + + P+ D+ G G + ++ L G+L + + +L N++ L
Sbjct: 240 FYVREILRLTPIGDVRGFGGKMGNRIQEMLNITLMGELLEVDISQLIETFPNQHEY-LRS 298
Query: 2029 HCRGEDDKELTFEHQRKSVSAEVNY-G-IRFQNNQEMETFLKQLAGEVEKRLEEVKMKGK 2086
G D+ + + S++ N+ G + ++ E++ +L L E+ KRL + + K
Sbjct: 299 VAEGHCDEPVRPRKESSSIAVSKNFPGKLSIRSVLELKKWLDGLTKELAKRLATDQAENK 358
Score = 96 (38.9 bits), Expect = 4.9e-08, Sum P(3) = 4.9e-08
Identities = 39/135 (28%), Positives = 59/135 (43%)
Query: 1615 VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRM 1674
VI IDMDCF+ V R +P L +PV V R+G+ E I +
Sbjct: 4 VISLIDMDCFYAQVEQRDNPSLWGQPVIVVQHS------RQGI----EGGILA------V 47
Query: 1675 GLNTREYGLGNGMFVGHALKKCPNLKI--VP---Y----DFEGYKEVSYCLYNLIASLTL 1725
R +G+ GM V A KCP + I VP Y D + Y++ S ++ ++ +
Sbjct: 48 SYEARPFGVKRGMTVAEAKLKCPQISICHVPIGEYVDKADIQKYRDASAEVFRVLNNYDS 107
Query: 1726 NIEAVSLYTNESFLN 1740
I +E+FL+
Sbjct: 108 QIIIEKASVDEAFLD 122
Score = 47 (21.6 bits), Expect = 4.9e-08, Sum P(3) = 4.9e-08
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 2221 KPPDQLNNPRPGPSNSTITPG 2241
+PP++L P P P ST T G
Sbjct: 471 EPPEKLKKPNPTPK-STGTDG 490
>UNIPROTKB|P20083 [details] [associations]
symbol:parE species:83333 "Escherichia coli K-12"
[GO:0030541 "plasmid partitioning" evidence=IDA] [GO:0051276
"chromosome organization" evidence=IMP] [GO:0007062 "sister
chromatid cohesion" evidence=IMP] [GO:0005694 "chromosome"
evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA] [GO:0046677
"response to antibiotic" evidence=IEA] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;IBA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;IBA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR005737 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046677 GO:GO:0006261 EMBL:U28377
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0007062 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880
HOGENOM:HOG000075154 GO:GO:0030541 KO:K02622 ProtClustDB:PRK05559
EMBL:M58409 EMBL:L22026 PIR:D65090 RefSeq:NP_417502.1
RefSeq:YP_491222.1 PDB:1S14 PDB:1S16 PDB:3FV5 PDBsum:1S14
PDBsum:1S16 PDBsum:3FV5 ProteinModelPortal:P20083 SMR:P20083
DIP:DIP-10441N IntAct:P20083 MINT:MINT-1223307 PRIDE:P20083
EnsemblBacteria:EBESCT00000001166 EnsemblBacteria:EBESCT00000016957
GeneID:12933399 GeneID:947501 KEGG:ecj:Y75_p2956 KEGG:eco:b3030
PATRIC:32121470 EchoBASE:EB0681 EcoGene:EG10687 OMA:GFIQSYC
BioCyc:EcoCyc:EG10687-MONOMER BioCyc:ECOL316407:JW2998-MONOMER
BindingDB:P20083 EvolutionaryTrace:P20083 Genevestigator:P20083
HAMAP:MF_00938 TIGRFAMs:TIGR01055 Uniprot:P20083
Length = 630
Score = 153 (58.9 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 41/142 (28%), Positives = 73/142 (51%)
Query: 474 LILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGL 533
L L EGDSA A R+ + PL+GK+LN E + ++L + E++++ +G+
Sbjct: 414 LFLVEGDSAGGSAKQARD---REYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGI 470
Query: 534 QYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIIN-FIHHNWPTLLRLPFLEEFIT 592
+D+ LRYG++ I+ D D DG HI L+ F+ H + L++ + +
Sbjct: 471 DPDS-----DDLSQLRYGKICILADADSDGLHIATLLCALFVKH-FRALVKHGHVYVALP 524
Query: 593 PIIKATKAREELSFYSLPEFEE 614
P+ + +E +Y+L E E+
Sbjct: 525 PLYRIDLGKEV--YYALTEEEK 544
Score = 61 (26.5 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 43/202 (21%), Positives = 76/202 (37%)
Query: 168 MIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMS 227
+I L ++++ + +GG +G G + N S + VE + + + + +N
Sbjct: 89 LILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKR--VEVNVRRDGQVYNIAF-ENGE 145
Query: 228 KVTSPEIKS--GSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFL 285
KV ++ G ++ T + F PD T F V +T A V++
Sbjct: 146 KVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFS---VSRLTHVLKAKAVLCPGVEITF 202
Query: 286 NGEKLPVKN---FQDYVKLYTDRQDEDGDPV---KIIYENVNPR-----WEVAIAPSDRG 334
E + +QD + Y + +G P K N W + P
Sbjct: 203 KDEINNTEQRWCYQDGLNDYL-AEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGE 261
Query: 335 FQQVSFVNSIATTKGGRHVDAV 356
S+VN I T +GG HV+ +
Sbjct: 262 LLTESYVNLIPTMQGGTHVNGL 283
Score = 46 (21.3 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 10/46 (21%), Positives = 25/46 (54%)
Query: 118 TISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTG 163
++ V ++G+G+PV H +E + +I L ++++ + +G
Sbjct: 64 SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSG 109
>UNIPROTKB|F1MAB3 [details] [associations]
symbol:Polk "Protein Polk" species:10116 "Rattus
norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00734 RGD:620058
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100
SUPFAM:SSF100879 IPI:IPI00372895 Ensembl:ENSRNOT00000040799
ArrayExpress:F1MAB3 Uniprot:F1MAB3
Length = 711
Score = 174 (66.3 bits), Expect = 6.4e-07, Sum P(3) = 6.4e-07
Identities = 47/179 (26%), Positives = 88/179 (49%)
Query: 1929 LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQ--IISDFMLNIPLSDLPG 1986
+R I ++T T S G N + A++ + K KPNGQ+ + P + DF+ ++P+ + G
Sbjct: 160 IRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQIVPSRSAVMDFIKDLPIRKVSG 219
Query: 1987 VGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCR-GEDDKELTFEHQRK 2045
+G L +LG TC +L + L + + +++ + H G +L + +RK
Sbjct: 220 IGKVTEKMLLALGIVTCTELYQ--QRALLSLLFSESSWHYFLHVALGLGSTDLARDGERK 277
Query: 2046 SVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPREAS 2104
S+S E + +E + ++L E+ L++ +KG+ +T+KL E AS
Sbjct: 278 SMSVERTFS-EINKTEEQYSLCQELCTELAHDLQKEGLKGRTVTIKLKNVDFEVKTRAS 335
Score = 43 (20.2 bits), Expect = 6.4e-07, Sum P(3) = 6.4e-07
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 1901 AVSCDEMYVDCSQLLQE 1917
A+S DE Y++ +Q LQE
Sbjct: 57 AMSLDEAYLNITQHLQE 73
Score = 39 (18.8 bits), Expect = 6.4e-07, Sum P(3) = 6.4e-07
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 1657 VDRQAEFDIYRQRTMNRMGLNTREYGL 1683
+D E + ++ + RMGLN + G+
Sbjct: 1 MDNTKEKNNFKDALLLRMGLNDNKAGM 27
>UNIPROTKB|G5EH81 [details] [associations]
symbol:MGCH7_ch7g688 "Sister chromatid cohesion protein
Eso1" species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0003684 GO:GO:0006281 EMBL:CM000230 EMBL:CM001237
GO:GO:0003887 Gene3D:3.30.1490.100 SUPFAM:SSF100879 KO:K03509
InterPro:IPR017061 PIRSF:PIRSF036603 RefSeq:XP_003720794.1
EnsemblFungi:MGG_02924T0 GeneID:2682477 KEGG:mgr:MGG_02924
Uniprot:G5EH81
Length = 668
Score = 139 (54.0 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 39/161 (24%), Positives = 79/161 (49%)
Query: 1929 LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVG 1988
+R+TI TCS G NKL ++L + KPN Q + + + F+ + + + +G
Sbjct: 253 IRQTIFTRLKYTCSAGVAGNKLLSKLGSAHKKPNQQTVIRGRAVRKFLSDFKFTKIRNLG 312
Query: 1989 HSLLFKL-NSLGAQTCGDLQNISLKRLQNEVGNKN-GLTLYKHCRGEDDKELTFEHQRKS 2046
L ++ + G ++ DL + L +L+ +G ++ L +Y RG D+ E+ Q KS
Sbjct: 313 GKLGDQVVAAFGTESVSDLLEVPLDQLKLRLGEESTALWVYNTIRGIDNSEVNSRTQIKS 372
Query: 2047 VSAEVNYGIRFQNNQEMETFLKQLAGEVEKRL-EEVKMKGK 2086
+ + ++ + + +L+ + ++ RL EE ++ K
Sbjct: 373 MLSAKSFRPSIHSVDQANKWLRIFSADIFSRLVEEGVLENK 413
Score = 62 (26.9 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 1653 VREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKI 1701
VR GVD + + + + + R++G+ + ALK CP L++
Sbjct: 65 VRLGVDEDRPLAVQQWQGLIAVNYPARKFGISRHCAIDDALKLCPELQV 113
Score = 61 (26.5 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 19/61 (31%), Positives = 27/61 (44%)
Query: 1608 SPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKG----NSSKVREGVDRQAEF 1663
S S P VI HID+D F+ + +D P+AV +G N + G+ R
Sbjct: 42 STSCPLRVISHIDLDAFYAQCEMVRLGVDEDRPLAVQQWQGLIAVNYPARKFGISRHCAI 101
Query: 1664 D 1664
D
Sbjct: 102 D 102
>UNIPROTKB|Q81NC2 [details] [associations]
symbol:BAS3053 "ImpB/mucB/samB family protein" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082710
InterPro:IPR025188 Pfam:PF13438 KO:K03502 OMA:LWFHANG
RefSeq:NP_845581.1 RefSeq:YP_019924.1 RefSeq:YP_029310.1
ProteinModelPortal:Q81NC2 IntAct:Q81NC2 DNASU:1085004
EnsemblBacteria:EBBACT00000009721 EnsemblBacteria:EBBACT00000013537
EnsemblBacteria:EBBACT00000022229 GeneID:1085004 GeneID:2820058
GeneID:2849965 KEGG:ban:BA_3288 KEGG:bar:GBAA_3288 KEGG:bat:BAS3053
ProtClustDB:CLSK2516929 BioCyc:BANT260799:GJAJ-3115-MONOMER
BioCyc:BANT261594:GJ7F-3218-MONOMER Uniprot:Q81NC2
Length = 421
Score = 143 (55.4 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 51/183 (27%), Positives = 82/183 (44%)
Query: 1903 SCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATK-KAKP 1961
S DE ++D + + + P +FA + I + T C+ G N L +++A +AK
Sbjct: 112 SIDEFFMDITDSIHLFARNPNEFALQFKREIYEHTRIECTIGIAPNLLMSKVALDIEAKK 171
Query: 1962 N--GQFHLTPQIISDFMLNI-PLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
N G + T + I + +I PLS G+ H KLN G + GDL N LK L+
Sbjct: 172 NKDGVAYWTYEDIPTKLWSIRPLSKFWGISHKTETKLNQKGIHSIGDLANYPLKYLKQSF 231
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVS-AEVNYGIRFQNNQEMETFLKQLAGEVEKR 2077
G G L+ H G D ++ ++ + S + +R +E L + EV R
Sbjct: 232 G-VIGEELHLHSNGIDFSRISEKYVPVTTSIGKSQILMRDYTIEEFPIILLEHTEEVCYR 290
Query: 2078 LEE 2080
L +
Sbjct: 291 LRQ 293
>TIGR_CMR|BA_3288 [details] [associations]
symbol:BA_3288 "impB/mucB/samB family protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0009650 "UV protection"
evidence=ISS] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082710
InterPro:IPR025188 Pfam:PF13438 KO:K03502 OMA:LWFHANG
RefSeq:NP_845581.1 RefSeq:YP_019924.1 RefSeq:YP_029310.1
ProteinModelPortal:Q81NC2 IntAct:Q81NC2 DNASU:1085004
EnsemblBacteria:EBBACT00000009721 EnsemblBacteria:EBBACT00000013537
EnsemblBacteria:EBBACT00000022229 GeneID:1085004 GeneID:2820058
GeneID:2849965 KEGG:ban:BA_3288 KEGG:bar:GBAA_3288 KEGG:bat:BAS3053
ProtClustDB:CLSK2516929 BioCyc:BANT260799:GJAJ-3115-MONOMER
BioCyc:BANT261594:GJ7F-3218-MONOMER Uniprot:Q81NC2
Length = 421
Score = 143 (55.4 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 51/183 (27%), Positives = 82/183 (44%)
Query: 1903 SCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATK-KAKP 1961
S DE ++D + + + P +FA + I + T C+ G N L +++A +AK
Sbjct: 112 SIDEFFMDITDSIHLFARNPNEFALQFKREIYEHTRIECTIGIAPNLLMSKVALDIEAKK 171
Query: 1962 N--GQFHLTPQIISDFMLNI-PLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEV 2018
N G + T + I + +I PLS G+ H KLN G + GDL N LK L+
Sbjct: 172 NKDGVAYWTYEDIPTKLWSIRPLSKFWGISHKTETKLNQKGIHSIGDLANYPLKYLKQSF 231
Query: 2019 GNKNGLTLYKHCRGEDDKELTFEHQRKSVS-AEVNYGIRFQNNQEMETFLKQLAGEVEKR 2077
G G L+ H G D ++ ++ + S + +R +E L + EV R
Sbjct: 232 G-VIGEELHLHSNGIDFSRISEKYVPVTTSIGKSQILMRDYTIEEFPIILLEHTEEVCYR 290
Query: 2078 LEE 2080
L +
Sbjct: 291 LRQ 293
>UNIPROTKB|J3KQ09 [details] [associations]
symbol:POLI "DNA polymerase iota" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
Gene3D:3.30.1490.100 SUPFAM:SSF100879 EMBL:AC093462 HGNC:HGNC:9182
ChiTaRS:POLI ProteinModelPortal:J3KQ09 Ensembl:ENST00000406285
Uniprot:J3KQ09
Length = 661
Score = 100 (40.3 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 1607 PSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
P+P+ VI+H+D+DCF+ V + +PEL+D+P+ V
Sbjct: 46 PTPNASSRVIVHVDLDCFYAQVEMISNPELKDKPLGV 82
Score = 73 (30.8 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 28/110 (25%), Positives = 51/110 (46%)
Query: 1987 VGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKS 2046
+G+ L +LG + DLQ S K L+ E+G + K GED+ + +S
Sbjct: 188 IGYKTAKCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQS 247
Query: 2047 VSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKG-KCITLKLMVR 2095
S E ++ + + E + +++L + L V G K T++L++R
Sbjct: 248 FSEEDSFK-KCSSEVEAKNKIEELLASL---LNRVCQDGRKPHTVRLIIR 293
Score = 70 (29.7 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVP-YDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNES 1737
R+ G+ M V A +KCP L +V D Y+E+SY + L+ + +E + N
Sbjct: 96 RKLGVKKLMNVRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFV 155
Query: 1738 FLNALPEDIRQEVL-DDLS 1755
L + E Q++ D+LS
Sbjct: 156 DLTEMVEKRLQQLQSDELS 174
>FB|FBgn0037554 [details] [associations]
symbol:DNApol-iota "DNApol-iota" species:7227 "Drosophila
melanogaster" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IMP;IDA;NAS] [GO:0019985 "translesion synthesis"
evidence=ISS;NAS;IDA] [GO:0003684 "damaged DNA binding"
evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
EMBL:AE014297 GO:GO:0003684 GO:GO:0003887 GO:GO:0019985
eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879 HSSP:P96022
GeneTree:ENSGT00530000062942 KO:K03510 EMBL:AY051762 EMBL:AB049434
RefSeq:NP_649772.1 RefSeq:NP_731214.1 UniGene:Dm.9926 SMR:Q9VHV1
IntAct:Q9VHV1 MINT:MINT-308720 EnsemblMetazoa:FBtr0081797
EnsemblMetazoa:FBtr0081798 GeneID:40965 KEGG:dme:Dmel_CG7602
UCSC:CG7602-RA CTD:40965 FlyBase:FBgn0037554 InParanoid:Q9VHV1
OMA:CCAGIAY OrthoDB:EOG42RBPH GenomeRNAi:40965 NextBio:821498
Uniprot:Q9VHV1
Length = 737
Score = 116 (45.9 bits), Expect = 3.8e-05, Sum P(3) = 3.8e-05
Identities = 46/199 (23%), Positives = 82/199 (41%)
Query: 1910 DCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTP 1969
DC Q L++ + A +RE + G TC G NKL A+L +PN Q L
Sbjct: 154 DCG-CAQRLAIGT-RIAQEIREELKLRLGITCCAGIAYNKLLAKLVGSSHEPNQQTVLVS 211
Query: 1970 QIISDFMLNI-PLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYK 2028
FM + L + G+G L G + LQ + ++ + G + L
Sbjct: 212 TYAEQFMRELGDLKRVTGIGQKTQCLLLEAGMSSVEQLQQCDMDVMRKKFGFETATRLRD 271
Query: 2029 HCRGEDDKELTFEHQRKSVSAE---VNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKG 2085
G D + + K++ E +R + LK+L VE+ E+ ++
Sbjct: 272 LAFGRDTSLVRPSGKPKTIGMEDACKPISVRTDVEERFRMLLKRL---VEQVAEDGRVP- 327
Query: 2086 KCITLKLMVRSAEAPREAS 2104
I +K+++R ++ +++S
Sbjct: 328 --IAIKVVLRKFDSQKKSS 344
Score = 71 (30.1 bits), Expect = 3.8e-05, Sum P(3) = 3.8e-05
Identities = 26/107 (24%), Positives = 50/107 (46%)
Query: 1652 KVREGVDRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIVP-YDFEGYK 1710
++R+ R I ++ + R G+ M + A + CP+L +V D Y+
Sbjct: 31 EIRDPTLRSKALGIQQKNIVVTCNYVARAKGVTKLMLIAEAQRICPDLVLVNGEDLAPYR 90
Query: 1711 EVSYCLYNLIASLTLNIEAVSLYTNESFLNALPEDIRQ-EVLDDLSR 1756
++S +++L+ + T +E + N + AL E +RQ V + L R
Sbjct: 91 QMSQRIFDLLLNYTPLVEKLGFDENFMDVTALVE-LRQAHVAEALLR 136
Score = 54 (24.1 bits), Expect = 3.8e-05, Sum P(3) = 3.8e-05
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 2227 NNPRPGPSNSTIT-PGPSNSTLP-PGPSNSTLPPGPSNS 2263
++P P P + +I PS +TLP P P+ + + S++
Sbjct: 616 SSPLPSPMDDSIAMSAPSTTTLPFPSPTTTAVVTSSSST 654
Score = 46 (21.3 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 24/106 (22%), Positives = 44/106 (41%)
Query: 2159 TKSSSLPMYISQASQ--ILKEVLFIVNKLKVDPVELRG-IG-IQVSKLEHQSKTL--ATI 2212
T +S +PM + S+ ++ +V+P + IG + VSK + + +
Sbjct: 479 TTASPVPMLLDNGSESAATNSDFSDFSETEVEPSPKKSRIGRLLVSKRSRLAADVGDSAA 538
Query: 2213 DTFFTNKGKPPDQLNNPRPGPSNSTITPGPSNSTLPPGPSNSTLPP 2258
+ +K + D N R + ++ PS ST P P T+ P
Sbjct: 539 EVASPSKLRVCDLRLNSRDSEKDFPMSTTPSTSTSAPAPRFRTVQP 584
>ASPGD|ASPL0000072145 [details] [associations]
symbol:AN4678 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0019985 "translesion synthesis"
evidence=IEA] [GO:0034087 "establishment of mitotic sister
chromatid cohesion" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 EMBL:BN001303
EMBL:AACD01000080 GO:GO:0003887 eggNOG:COG0389 Gene3D:3.30.1490.100
SUPFAM:SSF100879 KO:K03509 OrthoDB:EOG4M0J8V InterPro:IPR017061
PIRSF:PIRSF036603 RefSeq:XP_662282.1 ProteinModelPortal:Q5B452
STRING:Q5B452 EnsemblFungi:CADANIAT00005754 GeneID:2872476
KEGG:ani:AN4678.2 HOGENOM:HOG000173699 OMA:DDPDWDD Uniprot:Q5B452
Length = 674
Score = 137 (53.3 bits), Expect = 4.5e-05, Sum P(3) = 4.5e-05
Identities = 36/153 (23%), Positives = 72/153 (47%)
Query: 1929 LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVG 1988
+R + TCS G NK+ A+L + KPN Q + + I +F+ + + +G
Sbjct: 270 VRTAVWNSLSYTCSAGIAKNKMMAKLGSATNKPNKQTVVRNRAIQNFLSGFKFTKIRMLG 329
Query: 1989 HSLLFKLNSL-GAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSV 2047
L ++ ++ G + +L +SL++ + ++ + + LY RGED E+ Q KS+
Sbjct: 330 GKLGDQVTAMFGTEQISELLKVSLEQFRAKLNDDTAVWLYGIIRGEDKSEVNPRTQIKSM 389
Query: 2048 SAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEE 2080
+ ++ + + +L A ++ RL E
Sbjct: 390 LSAKSFRPSINTLDQADKWLHIFAADIYGRLVE 422
Score = 61 (26.5 bits), Expect = 4.5e-05, Sum P(3) = 4.5e-05
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 1608 SPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
SP+ P VI HID+D F+ + ++ P+AV
Sbjct: 37 SPASPLRVIAHIDLDAFYAQCEMVRLGTPRERPLAV 72
Score = 47 (21.6 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 1589 TSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEP 1640
+ LG++ L+E + S E + ID+ V ++ +PE++++P
Sbjct: 169 SGLGLSSQIKLQEALVEKASVDE-----VFIDLSPLVFGVLLQRYPEMREKP 215
Score = 40 (19.1 bits), Expect = 4.5e-05, Sum P(3) = 4.5e-05
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 1895 ESKIVSAVSCDEMYVDCSQLL 1915
+ +V S DE+++D S L+
Sbjct: 180 QEALVEKASVDEVFIDLSPLV 200
>UNIPROTKB|F1S1Z7 [details] [associations]
symbol:POLI "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
Gene3D:3.30.1490.100 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
OMA:VFYELPE EMBL:CU464155 Ensembl:ENSSSCT00000005003 Uniprot:F1S1Z7
Length = 737
Score = 91 (37.1 bits), Expect = 9.3e-05, Sum P(3) = 9.3e-05
Identities = 49/208 (23%), Positives = 86/208 (41%)
Query: 1894 SESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQAR 1953
S K+ S VSC M+ C + + Q ++ + + S G KL +
Sbjct: 174 SNYKLFSLVSCSHMFNTCILFIN--FIVGHQIYTFAGGGVLQ----LLSIGDSERKLISN 227
Query: 1954 LATKKAKP---NGQF--HLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQN 2008
L + + N + T Q + N + L G+G+ +L LG + DLQ
Sbjct: 228 LVSAQVFEVVCNSEVLSRTTTQFFNKQNNNYDIKSL-GIGYKTAKRLEVLGISSVRDLQT 286
Query: 2009 ISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEMETFLK 2068
S K L+ E+G + K GED+ +T +S S E ++ + + E + ++
Sbjct: 287 FSSKILEKELGISVAQRIQKLSFGEDNSPVTPSGPPQSFSEEDSFK-KCSSEVEAKNKIE 345
Query: 2069 QLAGEVEKRLEEVKMKG-KCITLKLMVR 2095
+L + L V G K T++L++R
Sbjct: 346 ELLANL---LNRVCQDGRKPHTVRLVIR 370
Score = 87 (35.7 bits), Expect = 9.3e-05, Sum P(3) = 9.3e-05
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 1590 SLGITEDEDLEETFSDNPSPS-EPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
S G E + L + D P+ VI+H+D+DCF+ V + +PEL+ +P+ V
Sbjct: 38 SSGPEEPDGLAWSVHDQVVPAGSSSRVIVHVDLDCFYAQVEMISNPELKGKPLGV 92
Score = 60 (26.2 bits), Expect = 9.3e-05, Sum P(3) = 9.3e-05
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 1679 REYGLGNGMFVGHALKKCPNLKIVP-YDFEGYKEVSY 1714
R++G+ M V A +KCP L +V D Y+E SY
Sbjct: 106 RKFGVKKLMKVRDAKEKCPQLVLVNGEDLTRYRETSY 142
>UNIPROTKB|B4DLV2 [details] [associations]
symbol:TOP2B "cDNA FLJ50986, highly similar to DNA
topoisomerase 2-beta (EC 5.99.1.3)" species:9606 "Homo sapiens"
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0001764 "neuron migration" evidence=IEA]
[GO:0007409 "axonogenesis" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR012542
InterPro:IPR013757 InterPro:IPR013760 Pfam:PF08070 GO:GO:0005524
GO:GO:0005634 GO:GO:0001764 GO:GO:0005694 GO:GO:0030900
GO:GO:0007409 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
Gene3D:1.10.268.10 UniGene:Hs.475733 HGNC:HGNC:11990 ChiTaRS:TOP2B
EMBL:AC093416 EMBL:AK297171 IPI:IPI01014228 SMR:B4DLV2
STRING:B4DLV2 Ensembl:ENST00000540199 Ensembl:ENST00000542520
UCSC:uc011awm.1 HOVERGEN:HBG106521 Uniprot:B4DLV2
Length = 478
Score = 139 (54.0 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 858 MTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDA-LREKDKI 907
M+ WSLT E+ EL+K+RD K E+N LK+K+P+DLW +DL A + E DK+
Sbjct: 1 MSLWSLTKEKVEELIKQRDAKGREVNDLKRKSPSDLWKEDLAAFVEELDKV 51
Score = 50 (22.7 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 1084 LDDTMPSAAGRRVEPK 1099
L++TMPS GRR+ P+
Sbjct: 82 LEETMPSPYGRRIIPE 97
Score = 39 (18.8 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 26/134 (19%), Positives = 52/134 (38%)
Query: 1390 ESSRTTHIIASNLPHTKIKKLKPGDKIIKPEWIVDSISAGKLLDHKKYLLYTGTDAKPLT 1449
E + T + + P K +K +PG ++ K SA K+ KK ++ ++K
Sbjct: 140 EEALTPSVPINKGPKPKREKKEPGTRVRKTPTSSGKPSAKKV---KKRNPWSDDESK--- 193
Query: 1450 KLLQKSYFENTEAPCCSKXXXXXXXXXXXXXXXXDNTEESKSEAVNSEESKSEAANPIES 1509
+S E TE + D +EE +A + ++ ++ ++
Sbjct: 194 ---SESDLEETEPVVIPRDSLLRRAAAERPKYTFDFSEEEDDDADDDDDDNNDLEE-LKV 249
Query: 1510 KQTVKTKESKLETV 1523
K + T + + E V
Sbjct: 250 KASPITNDGEDEFV 263
>UNIPROTKB|D6RDX9 [details] [associations]
symbol:POLK "DNA polymerase kappa" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR001126 InterPro:IPR017963 Pfam:PF00817
PROSITE:PS50173 GO:GO:0005634 GO:GO:0003684 GO:GO:0006281
EMBL:AC010245 EMBL:AC116341 GO:GO:0003887 HOGENOM:HOG000082711
HGNC:HGNC:9183 EMBL:AC026424 IPI:IPI01018200
ProteinModelPortal:D6RDX9 SMR:D6RDX9 Ensembl:ENST00000514296
UCSC:uc003kdz.2 BindingDB:D6RDX9 ArrayExpress:D6RDX9 Bgee:D6RDX9
Uniprot:D6RDX9
Length = 141
Score = 108 (43.1 bits), Expect = 0.00015, P = 0.00015
Identities = 37/112 (33%), Positives = 62/112 (55%)
Query: 1540 NEDFLG-EFYNKSRLHHL---STMGSMFKQYVNELREKHDGVFRGIEAIRKWK---TSLG 1592
N++ G E +K +++ + +T GS F Y NEL+ K V + IE + + K TS
Sbjct: 22 NDNKAGMEGLDKEKINKIIMEATKGSRF--YGNELK-KEKQVNQRIENMMQQKAQITSQQ 78
Query: 1593 ITEDEDLEETFSDNPSPSEP-EPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
+ + + + F+ S I+HIDMD F+ +V +R +PEL+D+P+AV
Sbjct: 79 LRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAV 130
>UNIPROTKB|D4A662 [details] [associations]
symbol:Polk "Protein Polk" species:10116 "Rattus
norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173
SMART:SM00734 RGD:620058 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
IPI:IPI00951859 Ensembl:ENSRNOT00000065248 ArrayExpress:D4A662
Uniprot:D4A662
Length = 434
Score = 99 (39.9 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 34/112 (30%), Positives = 62/112 (55%)
Query: 1540 NEDFLG-EFYNKSRLHHL---STMGSMFKQYVNELREKHDGVFRGIEAIRKWK---TSLG 1592
N++ G E +K +++ + +T GS F Y NEL+ K V + IE + + K TS
Sbjct: 21 NDNKAGMEGLDKEKINKIIMEATKGSRF--YGNELK-KEKQVNQRIENMMQQKAQITSQQ 77
Query: 1593 ITEDEDLEETFSDNPSPSEP-EPVIMHIDMDCFFVSVGIRHHPELQDEPVAV 1643
+ + + + F+ + I+H+DMD F+ +V +R +PEL+++P+AV
Sbjct: 78 LRKAQLQVDRFAMELERNRNLNNTIVHVDMDAFYAAVEMRDNPELKEKPIAV 129
Score = 81 (33.6 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 1677 NTREYGLGNGMFVGHALKK-CPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTN 1735
+ R +G+ M G K+ CP L IVP +F+ Y+ VS + ++A N A+SL +
Sbjct: 141 HARRFGVRAAM-PGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSL--D 197
Query: 1736 ESFLN 1740
E++LN
Sbjct: 198 EAYLN 202
>UNIPROTKB|J3KTN3 [details] [associations]
symbol:POLI "DNA polymerase iota" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] InterPro:IPR001126
InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 EMBL:AC093462 HGNC:HGNC:9182
ChiTaRS:POLI Ensembl:ENST00000583136 Uniprot:J3KTN3
Length = 222
Score = 127 (49.8 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 42/141 (29%), Positives = 69/141 (48%)
Query: 1875 EAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCS-QLLQELSLTPL---QFASYLR 1930
E + ++ V+ ++ S E V+ VS +Y + S LL L + L Q A+ +R
Sbjct: 84 ENFVDLTEMVEKRLQQLQSDELSAVT-VS-GHVYNNQSINLLDVLHIRLLVGSQIAAEMR 141
Query: 1931 ETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIP-LSDLPGVGH 1989
E + + G T G SNKL A+L + KPN Q L P+ + ++ + ++PG+G+
Sbjct: 142 EAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGY 201
Query: 1990 SLLFKLNSLGAQTCGDLQNIS 2010
L +LG + DLQ S
Sbjct: 202 KTAKCLEALGINSVRDLQTFS 222
Score = 37 (18.1 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 6/11 (54%), Positives = 10/11 (90%)
Query: 1633 HPELQDEPVAV 1643
+PEL+D+P+ V
Sbjct: 4 NPELKDKPLGV 14
Score = 37 (18.1 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 506 KLLNVREATHK---QILENAE 523
KL+NVR+A K +L N E
Sbjct: 34 KLMNVRDAKEKCPQLVLVNGE 54
>UNIPROTKB|Q8EYM0 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:189518
"Leptospira interrogans serovar Lai str. 56601" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR002205 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 SMART:SM00434 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 GO:GO:0009295
GO:GO:0006265 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 EMBL:AE010300 GenomeReviews:AE010300_GR HSSP:P09097
RefSeq:NP_714373.1 ProteinModelPortal:Q8EYM0 GeneID:1153535
KEGG:lil:LA_4193 PATRIC:22389225 HOGENOM:HOG000040410 OMA:TINVITH
ProtClustDB:CLSK575165 BioCyc:LINT189518:GJBB-3319-MONOMER
Uniprot:Q8EYM0
Length = 462
Score = 142 (55.0 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 661 EPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNFK 720
EP ++ +P+VL+N +GI TG+ IP H +IV + ++ + PL +KPWYK+F
Sbjct: 160 EPIHFVGKVPIVLLNNIQGIATGFRCFIPGHRLADIVKSQINYLKSKKPLSLKPWYKDFN 219
Query: 721 GEI 723
GE+
Sbjct: 220 GEV 222
Score = 40 (19.1 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 864 TMERKNELLKKRDDKMTELNILKKKAPTDLW 894
T+ R L+K+ D K+TE I++ + + W
Sbjct: 430 TLARYQGLVKE-DKKLTEFMIIELEELQNKW 459
Score = 39 (18.8 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 297 DYVKLYTDRQDE 308
DYVK Y + +DE
Sbjct: 149 DYVKNYDETEDE 160
>CGD|CAL0002818 [details] [associations]
symbol:RAD32 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0070987 "error-free translesion synthesis"
evidence=IEA] [GO:0042276 "error-prone translesion synthesis"
evidence=IEA] [GO:0034087 "establishment of mitotic sister
chromatid cohesion" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 CGD:CAL0002818 GO:GO:0003684 GO:GO:0006281
GO:GO:0003887 EMBL:AACQ01000019 eggNOG:COG0389 Gene3D:3.30.1490.100
SUPFAM:SSF100879 KO:K03509 HOGENOM:HOG000065930 RefSeq:XP_720989.1
ProteinModelPortal:Q5AHD1 STRING:Q5AHD1 GeneID:3637340
KEGG:cal:CaO19.866 Uniprot:Q5AHD1
Length = 640
Score = 142 (55.0 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 73/303 (24%), Positives = 138/303 (45%)
Query: 1929 LRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVG 1988
+R+ I +E G T S G K A+LA KP+ Q + I+ F+ N L+D+ G+G
Sbjct: 258 VRKDIFEELGYTTSAGLARTKQVAKLAAGFKKPDAQTIIRNSAINSFLTNFELTDVTGMG 317
Query: 1989 ----HSLLFKLN-SLGAQTCGDL-QNISLKRLQNEVGNKNGLTLYKHCRGEDDKELTFEH 2042
S++ K+N + + +N S ++ ++G + GL +Y RG + EL
Sbjct: 318 GKLGESIINKVNVPPQINSISFIRENFSDASIKEKLGGELGLKVYNIVRGINAIELQSTI 377
Query: 2043 QRKSVSAEVNY-GIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLMVRSAEAPR 2101
+ KS+++ N+ N + +LK AG++ RL ++ + ++ + ++
Sbjct: 378 EVKSMTSTKNFTSFVISNLFDAYDWLKVFAGDLHNRLIDLDSENMELSSTELSNKSKGIM 437
Query: 2102 EASKFLGHGVCDYITKSSSLPIYERPLIITYFLLLVRSAEAPREASKFLGHGVCDYITKS 2161
+ K L GV ++K+ + + + I + + ++ F +G C + +
Sbjct: 438 KRPKTLTLGV---LSKNGTRQTRQMQIPIH------KDLDKMKDI--FFENG-CVLLREF 485
Query: 2162 SSLPMYISQASQIL--KEVLFIVNKLKVDPVELRGIGIQVSK---LEHQSKTLATIDTFF 2216
+IS + KE+ FI + KV +EL + + +SK +E + L T DT F
Sbjct: 486 LEFNTHISLLNNRTPAKEI-FIWDPKKVKIMELINMSLTISKFVSVEDRFTLLKTTDTSF 544
Query: 2217 TNK 2219
NK
Sbjct: 545 -NK 546
Score = 38 (18.4 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 1572 EKHDGVFRGIEAIRKWKTSL 1591
E H G+ AI K K SL
Sbjct: 122 ESHWAYVEGLPAINKHKVSL 141
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.132 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 2307 2087 0.00086 126 3 11 23 0.44 34
41 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 202
No. of states in DFA: 632 (67 KB)
Total size of DFA: 807 KB (2340 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 215.24u 0.20s 215.44t Elapsed: 00:00:23
Total cpu time: 215.35u 0.21s 215.56t Elapsed: 00:00:23
Start: Thu Aug 15 15:52:47 2013 End: Thu Aug 15 15:53:10 2013
WARNINGS ISSUED: 1