RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7164
(2307 letters)
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 243 bits (620), Expect = 1e-67
Identities = 112/181 (61%), Positives = 139/181 (76%), Gaps = 7/181 (3%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
PKLEDAN AGTK CTL+LTEGDSA SLAV+GL VVGRD YG +PLRGK+LNVREA+
Sbjct: 8 YPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREAS 67
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
QIL+NAEI + KI+GLQ+ KKY ED K+LRYG LMIMTDQD DGSHIKGLIINF+
Sbjct: 68 ADQILKNAEIQAIKKIMGLQHRKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIINFL 124
Query: 575 HHNWPTLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFEEWKEETTNWHTYKIKYY 630
++ LL + FL EFITPIIK + + ++FY++P++E+W+EE ++ T+K KYY
Sbjct: 125 ESSFLGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYY 184
Query: 631 K 631
K
Sbjct: 185 K 185
Score = 74.1 bits (181), Expect = 1e-13
Identities = 31/109 (28%), Positives = 48/109 (44%)
Query: 796 DDDSEEEEIEEVFHDNELAKPQKTGPQLERQERQAAEGEDDEAGSQTQEEEDPDKDYDYL 855
+E N+ Q + + + E ++ + E+ Y+YL
Sbjct: 639 FPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYL 698
Query: 856 LGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWSDDLDALREK 904
LGM WSLT ER +LLK++ +K TEL L K + D+W+ DL A
Sbjct: 699 LGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVG 747
Score = 70.2 bits (171), Expect = 2e-12
Identities = 55/145 (37%), Positives = 77/145 (53%)
Query: 643 MNLHKVTSDSISMFIGRIEPEWYIPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKR 702
I +EPEWY+PI+PM+LVNGAEGIGTGW T IP NP EI+ NI+
Sbjct: 378 HPADDPLYKYIQEDEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRH 437
Query: 703 MIRGEDPLPMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITELQVGKWTTDYKDT 762
++ E+ M PW++ + G I+ R+ + G I + D+ LEITEL WT+ K+
Sbjct: 438 LMNDEELEQMHPWFRGWTGTIEEIEPLRYRMYGRIEQIGDNVLEITELPARTWTSTIKEY 497
Query: 763 LDTLLHGAEKDEVHPGPGRKSHPRP 787
L L G +K + + H
Sbjct: 498 LLLGLSGNDKIKPWIKDMEEQHDDN 522
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 239
Score = 195 bits (496), Expect = 9e-57
Identities = 129/264 (48%), Positives = 170/264 (64%), Gaps = 26/264 (9%)
Query: 31 SVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDE 90
S YQK SQLEHIL RPDTYIGSVE + W+ + ET+ M + +T VPGL+KIFDE
Sbjct: 1 SASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDE 60
Query: 91 ILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLT 150
ILVNA DNK RDP M I + ++ E +TI V N+GKGIP+ H E ++
Sbjct: 61 ILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIY----------- 109
Query: 151 SSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETS 210
+P MIFGHLLTSSNY+D+E KVTGGRNGYGAKLCNIFS++F++ET+
Sbjct: 110 --------------IPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETA 155
Query: 211 CSEYKKSFKQVWKDNMSKVTSPEIKSGSKDD-FTKITFTPDLTKFKMTSLDKDMVDLITR 269
+ + Q W++NMS P+I S K +TK+TF PDLT+F M LD D++ ++ R
Sbjct: 156 DLNVGQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRR 215
Query: 270 RAYDAAASTKDVKVFLNGEKLPVK 293
R YD S +D+ V+LNG+ L ++
Sbjct: 216 RVYDINGSVRDINVYLNGKSLKIR 239
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId:
562]}
Length = 219
Score = 138 bits (348), Expect = 4e-37
Identities = 45/263 (17%), Positives = 90/263 (34%), Gaps = 54/263 (20%)
Query: 36 YQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNA 95
+ L+ + RP YIG + T GL+ + E++ NA
Sbjct: 9 IKVLKGLDAVRKRPGMYIGDTDDGT----------------------GLHHMVFEVVDNA 46
Query: 96 CDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYN 155
D I N++SV ++G+GIP H +E +
Sbjct: 47 IDEALAGHCKEIIVT--IHADNSVSVQDDGRGIPTGIHPEEGVS---------------- 88
Query: 156 DEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYK 215
+I L ++D KV+GG +G G + N S K +
Sbjct: 89 ---------AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV--IQREG 137
Query: 216 KSFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMVDLITRRAYDAA 275
K +Q+++ + + ++ T + F P T++ + +++ +R + +
Sbjct: 138 KIHRQIYEHGV-PQAPLAVTGETEKTGTMVRFWPS--LETFTNVTEFEYEILAKRLRELS 194
Query: 276 ASTKDVKVFLNGEKLPVKNFQDY 298
V + L ++ ++ Y
Sbjct: 195 FLDSGVSIRLRDKRDGKEDHFHY 217
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus
[TaxId: 274]}
Length = 212
Score = 130 bits (329), Expect = 1e-34
Identities = 50/254 (19%), Positives = 78/254 (30%), Gaps = 56/254 (22%)
Query: 37 QKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNAC 96
+ LE + RP YIG T V G + +F EIL NA
Sbjct: 3 RVLKGLEGVRHRPAMYIGG-----------------------TGVEGYHHLFKEILDNAV 39
Query: 97 DNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYND 156
D + E +++V +NG+GIPV +E
Sbjct: 40 DEALAGYATEILVR--LNEDGSLTVEDNGRGIPVDLMPEEGKP----------------- 80
Query: 157 EEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKK 216
+I+ L + + KV+GG +G GA + N S VVE
Sbjct: 81 --------AVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVNALSEWTVVEVFREGKHH 132
Query: 217 SFKQVWKDNMSKVTSPEIKSGSKDDFTKITFTPDLTKFKMTSLDKDMV-DLITRRAYDAA 275
+ + + T++TF PD F D + + AY
Sbjct: 133 RIAFSRGEVTEPLRVVGE-APRGKTGTRVTFKPDPEIFGNLRFDPSKIRARLREVAYL-- 189
Query: 276 ASTKDVKVFLNGEK 289
+K+ +
Sbjct: 190 --VAGLKLVFQDRQ 201
>d1pvga1 d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 161
Score = 106 bits (265), Expect = 9e-27
Identities = 74/194 (38%), Positives = 97/194 (50%), Gaps = 50/194 (25%)
Query: 294 NFQDYVKLYTDRQDED------------GDPVKIIYENVNPRWEVAIAPSDRGFQQVSFV 341
NF++YV+LY ++ D I+YE +N RWEVA A SD FQQ+SFV
Sbjct: 1 NFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVSDISFQQISFV 60
Query: 342 NSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTL 401
NSIATT GG HV+ + D IVK+I E++KKK K
Sbjct: 61 NSIATTMGGTHVNYITDQIVKKISEILKKKKK---------------------------- 92
Query: 402 IDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTCVPKLEDA 461
++K FQ+KN+++IFINCLI NP F SQTKE +T + FGS C LE
Sbjct: 93 ---------KSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYI 143
Query: 462 NDAGTKNSIDCTLI 475
N K + +
Sbjct: 144 NKI-MKTDLATRMF 156
>d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo sapiens)
[TaxId: 9606]}
Length = 333
Score = 106 bits (265), Expect = 5e-25
Identities = 43/244 (17%), Positives = 84/244 (34%), Gaps = 12/244 (4%)
Query: 1806 HILSSNVSL-QEMRTMLREWMCESQP--EPSDIEMFSEYLSNLVEERHLNPIVILLRFLR 1862
I+ N + + ++E + + P ++ ++ +EER P F++
Sbjct: 91 IIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDKRRYFIK 150
Query: 1863 ------RHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQ 1916
KE +E + + + ++ Q
Sbjct: 151 MGSSVENDNPGKEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNNPQILQNSV 210
Query: 1917 ELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTP--QIISD 1974
+ + +R I ++T T S G N + A++ + K KPNGQ+ + P Q + D
Sbjct: 211 VFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMD 270
Query: 1975 FMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGED 2034
F+ ++P+ + G+G L +LG TC +L L + G
Sbjct: 271 FIKDLPIRKVSGIGKVTEKMLKALGIITCTELYQ-QRALLSLLFSETSWHYFLHISLGLG 329
Query: 2035 DKEL 2038
L
Sbjct: 330 STHL 333
Score = 86.8 bits (214), Expect = 2e-18
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 24/173 (13%)
Query: 1615 VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRM 1674
I+HIDMD F+ +V +R +PEL+D+P+AV S+
Sbjct: 28 TIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYH------------------- 68
Query: 1675 GLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLYT 1734
R +G+ M A + CP L IVP +F+ Y+ VS + ++A N A+SL
Sbjct: 69 ---ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSL-- 123
Query: 1735 NESFLNALPEDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTP 1787
+E++LN ++ + R+ + + +++ H +P
Sbjct: 124 DEAYLNITKHLEERQNWPEDKRRYFIKMGSSVENDNPGKEVNKLSEHERSISP 176
>d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens)
[TaxId: 9606]}
Length = 273
Score = 102 bits (255), Expect = 3e-24
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 3/184 (1%)
Query: 1859 RFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSE--SKIVSAVSCDEMYVDCSQLLQ 1916
L E + E + ++ V+ ++ S E + VS + ++ +L
Sbjct: 85 ELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELSAVTVSGHVYNNQSINLLDVLH 144
Query: 1917 ELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFM 1976
L Q A+ +RE + + G T G SNKL A+L + KPN Q L P+ +
Sbjct: 145 IRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLI 204
Query: 1977 LNI-PLSDLPGVGHSLLFKLNSLGAQTCGDLQNISLKRLQNEVGNKNGLTLYKHCRGEDD 2035
++ + ++PG+G+ L +LG + DLQ S K L+ E+G + K GED+
Sbjct: 205 HSLNHIKEIPGIGYKTAKCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDN 264
Query: 2036 KELT 2039
+
Sbjct: 265 SPVI 268
Score = 70.6 bits (172), Expect = 2e-13
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 25/127 (19%)
Query: 1615 VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRM 1674
VI+H+D+DCF+ V + +PEL+D+P+ V + E
Sbjct: 3 VIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYLVVTCNYE------------------- 43
Query: 1675 GLNTREYGLGNGMFVGHALKKCPNL-KIVPYDFEGYKEVSYCLYNLIASLTLNIEAVSLY 1733
R+ G+ M V A +KCP L + D Y+E+SY + L+ + +E +
Sbjct: 44 ---ARKLGVKKLMNVRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGF- 99
Query: 1734 TNESFLN 1740
+E+F++
Sbjct: 100 -DENFVD 105
>d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 389
Score = 96.9 bits (240), Expect = 2e-21
Identities = 29/228 (12%), Positives = 66/228 (28%), Gaps = 6/228 (2%)
Query: 1842 LSNLVEERHLNPIVILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHKPSSESKIVSA 1901
L + + L + + A + + K
Sbjct: 161 LGRICFNMLMFDNEYELTGDLKLKDALSNIREAFIGGNYDINSHLPLIPEKIKSLKFEGD 220
Query: 1902 VSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFGSNKLQARLATKKAKP 1961
V E + + Q +R++I G T S G S K +LA+ KP
Sbjct: 221 VFNPEGRDLITDWDDVILALGSQVCKGIRDSIKDILGYTTSCGLSSTKNVCKLASNYKKP 280
Query: 1962 NGQFHLTPQIISDFM--LNIPLSDLPGVGHSLLFKL-NSLGAQTCGDLQNISLKRLQN-- 2016
+ Q + + DF+ ++ +G L +L + L +++I N
Sbjct: 281 DAQTIVKNDCLLDFLDCGKFEITSFWTLGGVLGKELIDVLDLPHENSIKHIRETWPDNAG 340
Query: 2017 EVGNKNGLTLYKHCRGEDDKELTFEHQRKSVSAEVNYGIRFQNNQEME 2064
++ + + + + ++ ++ R + +
Sbjct: 341 QLKEFLDAKVKQSDYDRSTSNID-PLKTADLAEKLFKLSRGRYGLPLS 387
Score = 88.4 bits (218), Expect = 1e-18
Identities = 38/263 (14%), Positives = 71/263 (26%), Gaps = 59/263 (22%)
Query: 1598 DLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGV 1657
+L + S + + I HIDM+ FF V +++PV +
Sbjct: 8 ELIQLGSPSKAYESSLACIAHIDMNAFFAQVEQMRCGLSKEDPVVCVQWNSIIAVSYA-- 65
Query: 1658 DRQAEFDIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIV--------------- 1702
R+YG+ + ALKKC NL +
Sbjct: 66 --------------------ARKYGISRMDTIQEALKKCSNLIPIHTAVFKKGEDFWQYH 105
Query: 1703 -------------------PYDFEGYKEVSYCLYNLIASLTLNIEAVSLYTNESFLNALP 1743
E Y+ S + S +E S+ +E FL+ L
Sbjct: 106 DGCGSWVQDPAKQISVEDHKVSLEPYRRESRKALKIFKSACDLVERASI--DEVFLD-LG 162
Query: 1744 EDIRQEVLDDLSRQQSVLSREQNTTEPLAQDIICADSHTLVRTPSPSPILDMSTSILDTT 1803
++ D + + + ++ + + I + P + D
Sbjct: 163 RICFNMLMFDNEYELTGDLKLKDALSNIREAFIGGNYDINSHLPLIPEKIKSLKFEGDVF 222
Query: 1804 TSHILSSNVSLQEMRTMLREWMC 1826
++ L +C
Sbjct: 223 NPEGRDLITDWDDVILALGSQVC 245
>d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus
solfataricus [TaxId: 2287]}
Length = 209
Score = 81.4 bits (200), Expect = 1e-17
Identities = 31/136 (22%), Positives = 66/136 (48%)
Query: 1870 STVWAEAYQEMLSCVQSAMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYL 1929
S ++ + + + + + + + + S DE Y+D + ++ ++ A +
Sbjct: 74 SAIYVPMRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKI 133
Query: 1930 RETIAKETGCTCSTGFGSNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGH 1989
++ I ++ T + G NK+ A++ K+KPNG + P + DF+ + + ++PG+G
Sbjct: 134 KQEILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQDFLNELDIDEIPGIGS 193
Query: 1990 SLLFKLNSLGAQTCGD 2005
L +LN LG Q D
Sbjct: 194 VLARRLNELGIQKLRD 209
Score = 65.6 bits (159), Expect = 4e-12
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 15/112 (13%)
Query: 1611 EPEPVIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRT 1670
+++ +D D FF V +P+ + +P+ V G + G T
Sbjct: 2 HHHHIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTK--TSGA----------VAT 49
Query: 1671 MNRMGLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIAS 1722
N R+ G+ GM + A++ P+ VP Y+ S + NL+
Sbjct: 50 ANYE---ARKLGVKAGMPIIKAMQIAPSAIYVPMRKPIYEAFSNRIMNLLNK 98
>d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus
solfataricus, DNA polymerase IV [TaxId: 2287]}
Length = 240
Score = 81.2 bits (199), Expect = 4e-17
Identities = 28/153 (18%), Positives = 57/153 (37%)
Query: 1887 AMKHKPSSESKIVSAVSCDEMYVDCSQLLQELSLTPLQFASYLRETIAKETGCTCSTGFG 1946
+ E ++ + ++ I ++ T + G
Sbjct: 86 SRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGIS 145
Query: 1947 SNKLQARLATKKAKPNGQFHLTPQIISDFMLNIPLSDLPGVGHSLLFKLNSLGAQTCGDL 2006
NK+ A++A AKPNG + + + + + ++D+PG+G+ KL LG D
Sbjct: 146 KNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDT 205
Query: 2007 QNISLKRLQNEVGNKNGLTLYKHCRGEDDKELT 2039
+I +L+ +G L R E ++ +
Sbjct: 206 LSIEFDKLKGMIGEAKAKYLISLARDEYNEPIR 238
Score = 64.6 bits (156), Expect = 1e-11
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 15/114 (13%)
Query: 1615 VIMHIDMDCFFVSVGIRHHPELQDEPVAVAHGKGNSSKVREGVDRQAEFDIYRQRTMNRM 1674
+++ +D D F+ V +P L+ +PV V G G T N
Sbjct: 2 IVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFE--DSGAV----------ATANYE 49
Query: 1675 GLNTREYGLGNGMFVGHALKKCPNLKIVPYDFEGYKEVSYCLYNLIASLTLNIE 1728
R++G+ G+ + A K PN +P E Y++VS + NL+ + IE
Sbjct: 50 ---ARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIE 100
>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 75.3 bits (185), Expect = 6e-17
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 20/89 (22%)
Query: 1345 IFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHH-YESSRTTHIIASNLP 1403
IF GV +++ T P L+ + G ++ + TH++ S
Sbjct: 16 IFTGVRLYLPPST------------PDFSRLRRYFVAFDGDLVQEFDMTSATHVLGSRDK 63
Query: 1404 HTKIKKLKPGDKIIKPEWIVDSISAGKLL 1432
+ + + PEWI I +L+
Sbjct: 64 NPAA-------QQVSPEWIWACIRKRRLV 85
>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 132
Score = 71.0 bits (173), Expect = 9e-15
Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 19/120 (15%)
Query: 1328 KLEEQFELEANSD-----SRGGIFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLH 1382
KLE E N D + + G I++ + ++L+ L+
Sbjct: 18 KLEPTLENLENLDVSAFQAPEDLLDGCRIYLC-----------GFSGRKLDKLRRLINSG 66
Query: 1383 GGIYHHYESSRTTHIIASNLPHTK---IKKLKPGDKIIKPEWIVDSISAGKLLDHKKYLL 1439
GG+ + + TH+I + K ++ +W+++ S G +L + Y+
Sbjct: 67 GGVRFNQLNEDVTHVIVGDYDDELKQFWNKSAHRPHVVGAKWLLECFSKGYMLSEEPYIH 126
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 63.2 bits (153), Expect = 2e-12
Identities = 20/99 (20%), Positives = 30/99 (30%), Gaps = 13/99 (13%)
Query: 1345 IFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPH 1404
FQG F+ G +L + G Y S R +I +
Sbjct: 5 FFQGKHFFLYGEFPG----------DERRKLIRYVTAFNGELEDYMSDRVQFVITAQEWD 54
Query: 1405 TKIK---KLKPGDKIIKPEWIVDSISAGKLLDHKKYLLY 1440
+ P ++P WI KLL H+ Y +
Sbjct: 55 PSFEEALMDNPSLAFVRPRWIYSCNEKQKLLPHQLYGVV 93
>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein,
BRCA1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 60.2 bits (145), Expect = 2e-11
Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 21/106 (19%)
Query: 1345 IFQGVAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPH 1404
IF+G+ I G + ++L+ ++ L G SS T +
Sbjct: 3 IFRGLEICCYGP----------FTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVV 52
Query: 1405 TKI-----------KKLKPGDKIIKPEWIVDSISAGKLLDHKKYLL 1439
+ ++ EW++DS++ + + YL+
Sbjct: 53 VQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLI 98
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 63.4 bits (154), Expect = 2e-10
Identities = 30/131 (22%), Positives = 46/131 (35%), Gaps = 21/131 (16%)
Query: 658 GRIEPEWYIP-IIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGED-------- 708
G + +P IP +LVNG+ GI G T IP HN E+++ I ED
Sbjct: 122 GTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLME 181
Query: 709 --PLPMKPWYKNFKG-----EIDYCGDSRFVVNGEIAILDDDK-----LEITELQVGKWT 756
P P P G E G + + + D K + + E+
Sbjct: 182 HIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNK 241
Query: 757 TDYKDTLDTLL 767
+ + L+
Sbjct: 242 ARLIEKIAELV 252
Score = 46.5 bits (110), Expect = 3e-05
Identities = 18/121 (14%), Positives = 42/121 (34%), Gaps = 7/121 (5%)
Query: 791 KSYKIDDDSEEEEIEEVFHDNELAKPQKTGPQLERQERQAA--EGEDDEAGSQTQEEEDP 848
++ + + + LER AA E + E G +
Sbjct: 363 PIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLT 422
Query: 849 DKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKK--KAPTDLW---SDDLDALRE 903
++ +L + LT +LL + + + ++ L + + L ++L+ +RE
Sbjct: 423 EQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVRE 482
Query: 904 K 904
+
Sbjct: 483 Q 483
>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein,
BRCA1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 50.5 bits (120), Expect = 7e-08
Identities = 13/98 (13%), Positives = 32/98 (32%), Gaps = 18/98 (18%)
Query: 1349 VAIFVNGYTKHCMMLDAYYIVPSAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIK 1408
+++ V+G T + H + + TTH++ +
Sbjct: 2 MSMVVSGLTP-----------EEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCE 50
Query: 1409 K-------LKPGDKIIKPEWIVDSISAGKLLDHKKYLL 1439
+ + G ++ W+ SI K+L+ + +
Sbjct: 51 RTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEV 88
>d1t94a1 d.240.1.1 (A:411-515) DNA polymerase kappa {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 41.9 bits (98), Expect = 7e-05
Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 2043 QRKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLKLM 2093
+RKS+S E + +E + ++L E+ + L++ ++KG+ +T+KL
Sbjct: 2 ERKSMSVERTFS-EINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLK 51
>d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 153
Score = 39.6 bits (92), Expect = 0.001
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 1391 SSRTTHIIASNLPHTK--IKKLKPGDKIIKPEWIVDSISAGKLLDHKKYLLYTG 1442
++ +IA T+ L G + W+ DS A +L +++ YLL G
Sbjct: 85 TAYQCLLIADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLLPAG 138
>d1jx4a1 d.240.1.1 (A:241-341) DinB homolog (DBH) {Archaeon Sulfolobus
solfataricus, DNA polymerase IV [TaxId: 2287]}
Length = 101
Score = 35.4 bits (81), Expect = 0.011
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 2044 RKSVSAEVNYGIRFQNNQEMETFLKQLAGEVEKRLEEVKMKGKCITLK 2091
RKS+ V +N +E++ +L + E +L++ K +
Sbjct: 2 RKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAV 49
Score = 28.5 bits (63), Expect = 3.5
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 2156 DYITKSSSLPMYISQASQILKEVLFIVNKLKVDPVELRGIGIQVSKL 2202
D +++ + P IS+ + + V + L+ D ++R IG++ SK
Sbjct: 54 DIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKF 100
>d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus
[TaxId: 274]}
Length = 172
Score = 33.9 bits (77), Expect = 0.11
Identities = 25/163 (15%), Positives = 46/163 (28%), Gaps = 38/163 (23%)
Query: 296 QDYVKLYTDRQDEDGDPVKIIY---ENVNPRWEVAIAPSDRGFQQV-SFVNSIATTKGGR 351
+ K ED K + EV + ++ ++ N I T GG
Sbjct: 3 ASFAK-ALAE-GEDLLYEKPFLIRGTHGEVEVEVGFLHTQGYNAEILTYANMIPTRDGGT 60
Query: 352 HVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGM 411
H+ A A + + + KK N + T D+
Sbjct: 61 HLTAFKSAYSRALNQYAKKAGL------------------NKEKGPQPTGDDL------- 95
Query: 412 ALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC 454
++ ++ + NP F+ QTK + +
Sbjct: 96 -------LEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQ 131
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 148
Score = 32.9 bits (75), Expect = 0.17
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 80 YVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIPVVEHKDEK 137
+ GL + NA N + ++++ I++ +NG G+P E + +
Sbjct: 37 IIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSSRAGVEIAIDDNGSGVP--EGERQV 94
Query: 138 MFVP 141
+F
Sbjct: 95 VFER 98
>d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal
domain {Penicillium sp. [TaxId: 5081]}
Length = 354
Score = 34.0 bits (77), Expect = 0.20
Identities = 22/202 (10%), Positives = 47/202 (23%), Gaps = 2/202 (0%)
Query: 44 HILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDP 103
++L RP YI + + R + + Y+ I + +
Sbjct: 90 YLLARPGPYINAEVSGGGFPGWLQRVDGILRTSDEAYLKATDNYASNIAATIAKAQITNG 149
Query: 104 KMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTG 163
+ E + NG E I +++ + +
Sbjct: 150 GPIIL-YQPENEYSGACCGYNGFPDGSYMQYIEDHARDAGIVVPFISNDAWAAGHNAPGT 208
Query: 164 VVPT-MIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVW 222
I+GH ++ N + S E++ W
Sbjct: 209 GAGAVDIYGHDSYPLGFDCANPSTWPSGNLPTYFHTSHEQQSPSTPYSLVEFQGGAFDPW 268
Query: 223 KDNMSKVTSPEIKSGSKDDFTK 244
+ + + F K
Sbjct: 269 GGVGFAKCAALLNHEFERVFYK 290
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat
(Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Length = 190
Score = 32.7 bits (74), Expect = 0.28
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 77 EITYVPG-LYKIFDEILVNACD----NKQRDPKMNCIKITVNQETN--TISVWNNGKGIP 129
+ YVP LY + E+ NA + + + IKI V +I + + G G+P
Sbjct: 53 HMVYVPSHLYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVP 112
Query: 130 VVEHKDEKMFVP 141
K E++F
Sbjct: 113 --LRKIERLFSY 122
>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus
thermophilus [TaxId: 274]}
Length = 92
Score = 31.2 bits (71), Expect = 0.31
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 1371 SAEELKALMMLHGGIYHHYESSRTTHIIASNLPHTKIKK-LKPGDKIIKPEWIVDSISAG 1429
EE+KAL+ G S +T++++ P +K++K G + E + + A
Sbjct: 22 PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLEAR 81
Query: 1430 K 1430
Sbjct: 82 T 82
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 31.5 bits (70), Expect = 0.43
Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 10/89 (11%)
Query: 59 ITETMWLMNRETNHMERREITYVPG-LYKIFDEILVNACDNKQRDPKMN-------CIKI 110
E + ++ YVP L+ + E+ N+ + +
Sbjct: 39 APELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLV 98
Query: 111 TVNQETNTISVWNNGKGIPVVEHKDEKMF 139
T+ +E +I + + G G+P K +++F
Sbjct: 99 TLGKEDLSIKISDLGGGVP--LRKIDRLF 125
>d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B
{Escherichia coli [TaxId: 562]}
Length = 167
Score = 31.6 bits (71), Expect = 0.56
Identities = 23/164 (14%), Positives = 48/164 (29%), Gaps = 40/164 (24%)
Query: 297 DYVKLYTDRQDEDGDPVKIIY-----ENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGR 351
DY+ P K + W + P S+VN I T +GG
Sbjct: 5 DYLAEAV--NGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGT 62
Query: 352 HVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGM 411
HV+ + ++ + + + +
Sbjct: 63 HVNGLRQGLLDA-----------------------MREFCEYRNILPRG----------V 89
Query: 412 ALKPFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTCV 455
L + + ++ + +P F QTKE ++ ++ + + V
Sbjct: 90 KLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGV 133
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid
dehydrogenase kinase (BCK) {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 193
Score = 30.6 bits (68), Expect = 1.6
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 10/81 (12%)
Query: 69 ETNHMERREITYVPG-LYKIFDEILVNACDNKQR-----DPKMNCIKITVNQETN--TIS 120
N ++P L I E+L NA + + IT+ I
Sbjct: 38 RINGHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIR 97
Query: 121 VWNNGKGIPVVEHKDEKMFVP 141
+ + G GI +++
Sbjct: 98 ISDRGGGIA--HKDLDRVMDY 116
>d1i8da1 b.43.4.3 (A:1-93) Riboflavin synthase {Escherichia coli
[TaxId: 562]}
Length = 93
Score = 29.1 bits (65), Expect = 1.7
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 1385 IYHHYESSRTTHIIASNLPHTKIKKLKPGDKI 1416
+ + + ++ L T + LK GD +
Sbjct: 51 VTEINGNHVSFDLMKETLRITNLGDLKVGDWV 82
>d1cg5b_ a.1.1.2 (B:) Hemoglobin, beta-chain {Cartilaginous fish akaei
(Dasyatis akajei) [TaxId: 31902]}
Length = 141
Score = 29.6 bits (66), Expect = 2.1
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 6/73 (8%)
Query: 1825 MCESQPEPSDIEMFSEYLSNLVEERHLNP------IVILLRFLRRHVGKKESTVWAEAYQ 1878
+ E+ + +E+ + LS +E ++ + L H K A
Sbjct: 67 LGEAIDDLKKVEINFQNLSGKHQEIGVDTQNFKLLGQTFMVELALHYKKTFRPKEHAAAY 126
Query: 1879 EMLSCVQSAMKHK 1891
+ V A+
Sbjct: 127 KFFRLVAEALSSN 139
>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima
[TaxId: 2336]}
Length = 180
Score = 30.2 bits (67), Expect = 2.1
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 1977 LNIPLSDLPGVGHSLLFKLNSLGAQTCGDL 2006
L+ + GVG + KL LG +T DL
Sbjct: 8 LSTDIQYAKGVGPNRKKKLKKLGIETLRDL 37
>d1tjoa_ a.25.1.1 (A:) Dodecameric ferritin homolog {Archaeon
Halobacterium salinarum [TaxId: 2242]}
Length = 180
Score = 30.1 bits (67), Expect = 2.1
Identities = 18/116 (15%), Positives = 42/116 (36%), Gaps = 3/116 (2%)
Query: 1509 SKQTVKTKESKLETVN-ISAPKPQASSTKNASNEDFLGEF--YNKSRLHHLSTMGSMFKQ 1565
+++ + ++E + + +A +A N D + Y++ + HH + G+ F+
Sbjct: 2 TQKNARATAGEVEGSDALRMDADRAEQCVDALNADLANVYVLYHQLKKHHWNVEGAEFRD 61
Query: 1566 YVNELREKHDGVFRGIEAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHIDM 1621
L E + + + + +LG E ++ E E V
Sbjct: 62 LHLFLGEAAETAEEVADELAERVQALGGVPHASPETLQAEASVDVEDEDVYDIRTS 117
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853
{Thermotoga maritima [TaxId: 2336]}
Length = 161
Score = 29.5 bits (66), Expect = 2.7
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQETN--TISVWNNGKGIP 129
+ ++ +L N ++D +K+ ++++ I V +NG GIP
Sbjct: 50 IRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIP 97
>d2b0aa1 c.8.8.1 (A:1-186) Hypothetical protein MJ0783 {Methanococcus
jannaschii [TaxId: 2190]}
Length = 186
Score = 29.7 bits (66), Expect = 3.0
Identities = 32/167 (19%), Positives = 45/167 (26%), Gaps = 23/167 (13%)
Query: 1598 DLEETFSDNPSPSEPEPVIMHIDMDCFFVSV------------GIRHHPELQDEPVAVAH 1645
DL +T + P P +PE I+ +D F VS +H P
Sbjct: 4 DLTQTLINFPRPGDPELRIIEKKIDGFIVSEIIMGSHLCTHIDYPKHVGLENRIPFKDGI 63
Query: 1646 GKGNSSKVREGVDRQAEF---DIYRQRTMNRMGLNTREYGLGNGMFVGHALKKCPNLKIV 1702
KG + + DI T EY N+K V
Sbjct: 64 IKGKGYCISLDDFPGNKLPACDILLIYTGFSKYWGRDEYFEKIPEIPFLDDIIKSNIKCV 123
Query: 1703 PYDFEGYKEVSYCLYNL------IASLTLNIEAVSLYTNESFLNALP 1743
D L I +L N++ L + LP
Sbjct: 124 GIDACTIGGFEEHKRLLSNNILIIENLNENLKN--LVGKSFYFLGLP 168
>d2iaya1 d.376.1.1 (A:1-113) Hypothetical protein Lp2179
{Lactobacillus plantarum [TaxId: 1590]}
Length = 113
Score = 27.7 bits (62), Expect = 5.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 244 KITFTPDLTKFKMTSLDKD 262
K+T DLT FKMT++ +
Sbjct: 59 KMTVNADLTGFKMTTVTGN 77
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor
EnvZ {Escherichia coli [TaxId: 562]}
Length = 161
Score = 28.3 bits (63), Expect = 6.1
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 15/87 (17%)
Query: 65 LMNRETNHMERREITYVPGLYKI------FDEILVNACDN--KQRDPKMNCIKITVNQET 116
++ E+ + E PG ++ + N N + + IK++ E
Sbjct: 19 VIAAESGYEREIETALYPGSIEVKMHPLSIKRAVANMVVNAARYGNGW---IKVSSGTEP 75
Query: 117 N--TISVWNNGKGIPVVEHKDEKMFVP 141
N V ++G GI + + +F P
Sbjct: 76 NRAWFQVEDDGPGIA--PEQRKHLFQP 100
>d2dn3b1 a.1.1.2 (B:2-146) Hemoglobin, beta-chain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 145
Score = 28.1 bits (62), Expect = 6.6
Identities = 19/98 (19%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 1801 DTTTSHILSSNVSLQEMRTMLREWMCESQPEPSDIEMFSEYLSNL------VEERHLNPI 1854
D +T + N ++ + + +++ LS L V+ + +
Sbjct: 46 DLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLL 105
Query: 1855 -VILLRFLRRHVGKKESTVWAEAYQEMLSCVQSAMKHK 1891
+L+ L H GK+ + AYQ++++ V +A+ HK
Sbjct: 106 GNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHK 143
>d1s7ma_ b.144.1.1 (A:) Autotransporter Hia {Haemophilus influenzae
[TaxId: 727]}
Length = 158
Score = 28.4 bits (63), Expect = 6.9
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 1059 ENSNITKIKSKLKEKGSKKRNPLSSLDDTMPSAAGRRVEPKYEELLIKAEKAAAPKKPN 1117
++ + S LK+ G +PL+S D ++ + Y+ L EK + P
Sbjct: 37 GGQSVKNVVSGLKKFGDANFDPLTSSADN----LTKQNDDAYKGLTNLDEKGTDKQTPV 91
>d1ds6b_ b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human
(Homo sapiens) [TaxId: 9606]}
Length = 179
Score = 28.1 bits (63), Expect = 8.6
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 13/88 (14%)
Query: 1582 EAIRKWKTSLGITEDEDLEETFSDNPSPSEPEPVIMHIDMDCFFVSVGIRHHPELQDEPV 1641
E++ K+K +L P P V+ + + V P D
Sbjct: 22 ESLIKYKKTLLGDGP--------VVTDPKAPNVVVTRLTL----VCES-APGPITMDLTG 68
Query: 1642 AVAHGKGNSSKVREGVDRQAEFDIYRQR 1669
+ K + ++EG + + + R
Sbjct: 69 DLEALKKETIVLKEGSEYRVKIHFKVNR 96
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.131 0.377
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 8,376,653
Number of extensions: 407737
Number of successful extensions: 969
Number of sequences better than 10.0: 1
Number of HSP's gapped: 939
Number of HSP's successfully gapped: 67
Length of query: 2307
Length of database: 2,407,596
Length adjustment: 100
Effective length of query: 2207
Effective length of database: 1,034,596
Effective search space: 2283353372
Effective search space used: 2283353372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (27.7 bits)