Query psy7167
Match_columns 897
No_of_seqs 633 out of 3537
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 19:56:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7167.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7167hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00190 Tryp_SPc Trypsin-like 100.0 2.5E-39 5.3E-44 337.7 25.9 232 649-891 1-232 (232)
2 KOG3627|consensus 100.0 1.2E-38 2.6E-43 341.6 25.5 239 646-893 10-255 (256)
3 smart00020 Tryp_SPc Trypsin-li 100.0 2.5E-36 5.4E-41 316.0 23.9 229 648-888 1-229 (229)
4 PF00089 Trypsin: Trypsin; In 100.0 1.2E-34 2.5E-39 300.4 25.2 220 649-888 1-220 (220)
5 cd07441 CRD_SFRP3 Cysteine-ric 100.0 9E-34 2E-38 268.8 4.5 121 317-442 2-124 (126)
6 cd07442 CRD_SFRP4 Cysteine-ric 100.0 1.6E-33 3.4E-38 267.5 4.2 122 316-442 2-125 (127)
7 cd07466 CRD_FZ7 Cysteine-rich 100.0 2.6E-33 5.6E-38 266.3 5.0 119 316-438 2-120 (125)
8 cd07464 CRD_FZ2 Cysteine-rich 100.0 3.2E-33 7E-38 266.0 5.0 120 316-439 2-121 (127)
9 cd07465 CRD_FZ1 Cysteine-rich 100.0 4.4E-33 9.6E-38 265.4 5.3 120 316-439 2-121 (127)
10 cd07458 CRD_FZ1_like Cysteine- 100.0 6.4E-33 1.4E-37 261.9 5.0 117 317-437 1-117 (119)
11 cd07449 CRD_FZ3 Cysteine-rich 100.0 8.3E-33 1.8E-37 262.3 4.5 117 318-437 4-120 (127)
12 cd07463 CRD_FZ9 Cysteine-rich 100.0 1.1E-32 2.3E-37 262.7 5.0 121 316-439 2-123 (127)
13 cd07460 CRD_FZ5 Cysteine-rich 100.0 1.2E-32 2.5E-37 262.2 5.0 120 316-438 2-122 (127)
14 cd07462 CRD_FZ10 Cysteine-rich 100.0 1.4E-32 3E-37 261.7 5.4 120 316-438 2-122 (127)
15 cd07461 CRD_FZ8 Cysteine-rich 100.0 1.8E-32 3.8E-37 260.8 4.8 119 316-437 2-121 (125)
16 cd07454 CRD_LIN_17 Cysteine-ri 100.0 2.4E-32 5.2E-37 259.6 4.8 117 316-438 2-119 (124)
17 cd07456 CRD_FZ5_like Cysteine- 100.0 3.4E-32 7.4E-37 257.6 5.1 117 318-437 1-118 (120)
18 cd07457 CRD_FZ9_like Cysteine- 100.0 3.3E-32 7.1E-37 258.1 4.9 118 317-437 1-119 (121)
19 cd07888 CRD_corin_2 One of two 100.0 3.1E-32 6.7E-37 258.4 4.6 118 318-438 1-121 (122)
20 cd07450 CRD_FZ6 Cysteine-rich 100.0 7.1E-32 1.5E-36 256.2 4.5 110 317-428 3-112 (127)
21 cd07448 CRD_FZ4 Cysteine-rich 100.0 1.2E-31 2.6E-36 256.0 5.0 119 317-438 2-121 (126)
22 cd07444 CRD_SFRP5 Cysteine-ric 100.0 1.6E-31 3.6E-36 254.1 5.3 116 315-438 3-120 (127)
23 cd07446 CRD_SFRP2 Cysteine-ric 100.0 2.6E-31 5.7E-36 253.6 5.7 117 316-438 2-121 (128)
24 cd07445 CRD_corin_1 One of two 100.0 1.9E-31 4E-36 252.7 4.4 111 316-429 2-115 (130)
25 cd07443 CRD_SFRP1 Cysteine-ric 100.0 2.8E-31 6.1E-36 251.4 5.3 115 315-438 3-119 (124)
26 cd07447 CRD_Carboxypeptidase_Z 100.0 3.2E-31 6.9E-36 252.7 4.4 117 317-439 2-123 (128)
27 COG5640 Secreted trypsin-like 100.0 4.3E-29 9.2E-34 266.7 17.2 239 645-897 29-283 (413)
28 cd07453 CRD_crescent Cysteine- 100.0 1.8E-30 3.8E-35 248.9 4.4 115 317-439 1-117 (135)
29 cd07452 CRD_sizzled Cysteine-r 100.0 4.5E-30 9.8E-35 247.5 5.8 117 315-439 5-123 (141)
30 smart00063 FRI Frizzled. Droso 100.0 2.9E-30 6.4E-35 242.9 4.3 112 319-436 1-112 (113)
31 cd07455 CRD_Collagen_XVIII Cys 100.0 3.6E-29 7.8E-34 236.2 4.4 114 316-438 2-118 (123)
32 cd07451 CRD_SMO Cysteine-rich 99.9 2E-28 4.4E-33 233.9 5.1 108 316-426 2-110 (132)
33 KOG3577|consensus 99.9 1E-25 2.2E-30 264.8 8.3 167 312-494 36-203 (556)
34 cd07066 CRD_FZ CRD_domain cyst 99.9 1E-23 2.2E-28 201.3 4.4 116 318-437 1-117 (119)
35 PF01392 Fz: Fz domain; Inter 99.8 7.2E-22 1.6E-26 186.9 1.6 114 319-435 1-116 (116)
36 PF03761 DUF316: Domain of unk 99.6 1.1E-13 2.5E-18 151.2 19.9 221 632-890 30-277 (282)
37 PF09342 DUF1986: Domain of un 99.3 2.7E-11 5.9E-16 125.4 15.2 118 656-784 12-131 (267)
38 PF00057 Ldl_recept_a: Low-den 98.8 3.5E-09 7.6E-14 79.9 2.8 33 453-485 5-37 (37)
39 cd00112 LDLa Low Density Lipop 98.7 6.3E-09 1.4E-13 77.6 2.3 32 454-485 4-35 (35)
40 cd00112 LDLa Low Density Lipop 98.7 1.2E-08 2.6E-13 76.2 2.2 35 488-522 1-35 (35)
41 PF00057 Ldl_recept_a: Low-den 98.6 1.3E-08 2.9E-13 76.8 2.3 36 487-522 2-37 (37)
42 PF12999 PRKCSH-like: Glucosid 98.6 2.5E-08 5.5E-13 100.1 4.1 66 454-519 36-110 (176)
43 COG3591 V8-like Glu-specific e 98.6 6.7E-07 1.4E-11 95.2 13.9 201 656-893 45-251 (251)
44 smart00192 LDLa Low-density li 98.3 3.6E-07 7.8E-12 67.3 2.7 28 455-482 6-33 (33)
45 smart00192 LDLa Low-density li 98.2 6.3E-07 1.4E-11 66.0 2.4 32 488-519 2-33 (33)
46 PF15494 SRCR_2: Scavenger rec 98.1 4.8E-06 1E-10 77.0 5.9 94 534-636 3-97 (98)
47 KOG1215|consensus 97.5 0.00012 2.6E-09 92.8 6.1 72 453-524 220-296 (877)
48 KOG1215|consensus 97.4 9.7E-05 2.1E-09 93.6 3.3 70 451-520 138-251 (877)
49 TIGR02037 degP_htrA_DO peripla 97.3 0.004 8.7E-08 72.6 15.1 84 674-784 58-142 (428)
50 KOG2397|consensus 97.1 0.00028 6.1E-09 80.4 3.4 68 454-521 43-115 (480)
51 TIGR02038 protease_degS peripl 97.0 0.029 6.3E-07 63.8 18.3 83 674-784 78-161 (351)
52 PRK10898 serine endoprotease; 96.8 0.034 7.4E-07 63.3 16.7 83 674-784 78-161 (353)
53 PRK10139 serine endoprotease; 96.5 0.12 2.6E-06 60.9 19.0 142 674-867 90-233 (455)
54 PF13365 Trypsin_2: Trypsin-li 96.4 0.011 2.4E-07 55.2 7.5 21 676-696 1-22 (120)
55 cd07459 CRD_TK_ROR_like Cystei 96.3 0.002 4.4E-08 63.2 1.8 111 317-428 1-123 (135)
56 PRK10942 serine endoprotease; 95.9 0.33 7.1E-06 57.5 18.4 83 674-783 111-195 (473)
57 PF02395 Peptidase_S6: Immunog 93.9 0.63 1.4E-05 57.9 13.7 33 837-870 213-245 (769)
58 PF12999 PRKCSH-like: Glucosid 93.2 0.067 1.5E-06 54.4 3.0 48 435-482 55-110 (176)
59 smart00202 SR Scavenger recept 92.9 0.074 1.6E-06 49.1 2.7 39 533-574 10-48 (101)
60 PF00530 SRCR: Scavenger recep 91.6 0.083 1.8E-06 48.1 1.3 39 533-573 7-45 (99)
61 PF09272 Hepsin-SRCR: Hepsin, 91.2 0.081 1.8E-06 48.7 0.7 39 533-572 10-48 (110)
62 KOG3509|consensus 88.7 0.37 8E-06 60.5 3.9 73 452-524 33-112 (964)
63 cd07468 CRD_TK_ROR2 Cysteine-r 86.0 0.3 6.5E-06 48.0 0.8 84 316-403 2-95 (140)
64 cd07467 CRD_TK_ROR1 Cysteine-r 83.5 0.31 6.7E-06 48.0 -0.4 84 316-403 2-95 (142)
65 cd07469 CRD_TK_ROR_related Cys 79.5 0.64 1.4E-05 46.1 0.3 86 316-403 2-96 (147)
66 KOG2397|consensus 77.5 2.3 4.9E-05 49.5 3.8 47 439-485 65-116 (480)
67 PF00548 Peptidase_C3: 3C cyst 72.1 13 0.00029 37.9 7.6 150 671-867 22-171 (172)
68 PF00863 Peptidase_C4: Peptida 70.2 34 0.00073 36.9 10.2 153 680-888 37-192 (235)
69 KOG3509|consensus 50.6 8.1 0.00018 49.0 1.7 63 462-524 2-68 (964)
70 PF00947 Pico_P2A: Picornaviru 37.6 25 0.00054 34.1 2.4 34 839-884 89-122 (127)
71 PF12929 Mid1: Stretch-activat 36.5 27 0.00058 40.9 2.9 90 316-407 230-392 (427)
72 COG0265 DegQ Trypsin-like seri 28.7 8.8E+02 0.019 27.3 15.4 168 674-892 72-240 (347)
73 PF06040 Adeno_E3: Adenovirus 24.4 58 0.0013 30.9 2.3 51 216-266 52-105 (127)
No 1
>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.
Probab=100.00 E-value=2.5e-39 Score=337.73 Aligned_cols=232 Identities=44% Similarity=0.810 Sum_probs=198.7
Q ss_pred eeCCeecCCCCCceEEEEEcCCCceEEeeEEEEeCCeEEeecceeccCCCCcccceEEEeeeeeccCccccceEEEEEEE
Q psy7167 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGV 728 (897)
Q Consensus 649 IvGG~~a~~ge~PW~VsL~~~~~~~~~CgGTLIs~~wVLTAAHC~~~~~~~~~~~~~V~lG~~~~~~~~~~~~~~~V~~I 728 (897)
|+||..+..++|||+|.|+... ..++|+||||+++||||||||+.... ...+.|++|...........+.+.|.++
T Consensus 1 i~~G~~~~~~~~Pw~v~i~~~~-~~~~C~GtlIs~~~VLTaAhC~~~~~---~~~~~v~~g~~~~~~~~~~~~~~~v~~~ 76 (232)
T cd00190 1 IVGGSEAKIGSFPWQVSLQYTG-GRHFCGGSLISPRWVLTAAHCVYSSA---PSNYTVRLGSHDLSSNEGGGQVIKVKKV 76 (232)
T ss_pred CcCCeECCCCCCCCEEEEEccC-CcEEEEEEEeeCCEEEECHHhcCCCC---CccEEEEeCcccccCCCCceEEEEEEEE
Confidence 6899999999999999998653 56899999999999999999997643 3578899998776654445678899999
Q ss_pred eeCCCCCCCCCCCCceEEEEeccceecCCCceeeecCCCCCCCCCCCEEEEEEecccCCCCCccccccceEEEEeeeChh
Q psy7167 729 FAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRD 808 (897)
Q Consensus 729 iiHP~Y~~~~t~~nDIALLkL~~pi~fs~~V~PICLP~~~~~~~~g~~c~vtGWG~t~~~~~~~~s~~L~~~~v~vis~~ 808 (897)
++||.|+. ....+|||||||++|+.++.+++|||||........+..++++|||..... ......++...+.+++..
T Consensus 77 ~~hp~y~~-~~~~~DiAll~L~~~~~~~~~v~picl~~~~~~~~~~~~~~~~G~g~~~~~--~~~~~~~~~~~~~~~~~~ 153 (232)
T cd00190 77 IVHPNYNP-STYDNDIALLKLKRPVTLSDNVRPICLPSSGYNLPAGTTCTVSGWGRTSEG--GPLPDVLQEVNVPIVSNA 153 (232)
T ss_pred EECCCCCC-CCCcCCEEEEEECCcccCCCcccceECCCccccCCCCCEEEEEeCCcCCCC--CCCCceeeEEEeeeECHH
Confidence 99999984 467899999999999999999999999987656677899999999987654 234567999999999999
Q ss_pred HHHhhcCCCCCCccCCeEEeecCCCCcCCCCCCCCCceEEEecCCCCcEEEEEEEecCCCCCCCCCCcEEEecchhHHHH
Q psy7167 809 ICNKWLNNRELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYVTWI 888 (897)
Q Consensus 809 ~C~~~~~~~~~~it~~~iCAg~~~~~~d~C~GDSGGPLvc~~~~~~~~w~LvGIvS~G~~C~~~~~PgVYT~Vs~y~dWI 888 (897)
.|...+.. ...+.+.+||++......+.|.|||||||++... ++|+|+||+|+|..|...+.|++||+|..|++||
T Consensus 154 ~C~~~~~~-~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~---~~~~lvGI~s~g~~c~~~~~~~~~t~v~~~~~WI 229 (232)
T cd00190 154 ECKRAYSY-GGTITDNMLCAGGLEGGKDACQGDSGGPLVCNDN---GRGVLVGIVSWGSGCARPNYPGVYTRVSSYLDWI 229 (232)
T ss_pred HhhhhccC-cccCCCceEeeCCCCCCCccccCCCCCcEEEEeC---CEEEEEEEEehhhccCCCCCCCEEEEcHHhhHHh
Confidence 99987763 2357889999987655788999999999999873 7899999999999998777899999999999999
Q ss_pred HHH
Q psy7167 889 QDI 891 (897)
Q Consensus 889 ~~~ 891 (897)
+++
T Consensus 230 ~~~ 232 (232)
T cd00190 230 QKT 232 (232)
T ss_pred hcC
Confidence 864
No 2
>KOG3627|consensus
Probab=100.00 E-value=1.2e-38 Score=341.57 Aligned_cols=239 Identities=42% Similarity=0.789 Sum_probs=196.5
Q ss_pred CceeeCCeecCCCCCceEEEEEcCCCceEEeeEEEEeCCeEEeecceeccCCCCcccceEEEeeeeeccCc-ccc--ceE
Q psy7167 646 RKRIIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQLGVTRRNSY-AFF--GTR 722 (897)
Q Consensus 646 ~~RIvGG~~a~~ge~PW~VsL~~~~~~~~~CgGTLIs~~wVLTAAHC~~~~~~~~~~~~~V~lG~~~~~~~-~~~--~~~ 722 (897)
..||+||.++.+++|||+|+|.......++|||+||+++||||||||+.... .. .+.|++|....... ... ...
T Consensus 10 ~~~i~~g~~~~~~~~Pw~~~l~~~~~~~~~Cggsli~~~~vltaaHC~~~~~--~~-~~~V~~G~~~~~~~~~~~~~~~~ 86 (256)
T KOG3627|consen 10 EGRIVGGTEAEPGSFPWQVSLQYGGNGRHLCGGSLISPRWVLTAAHCVKGAS--AS-LYTVRLGEHDINLSVSEGEEQLV 86 (256)
T ss_pred cCCEeCCccCCCCCCCCEEEEEECCCcceeeeeEEeeCCEEEEChhhCCCCC--Cc-ceEEEECccccccccccCchhhh
Confidence 5789999999999999999998654335799999999999999999997643 11 67899987644332 112 244
Q ss_pred EEEEEEeeCCCCCCCCCCC-CceEEEEeccceecCCCceeeecCCCCC--CCCCCCEEEEEEecccCCCCCccccccceE
Q psy7167 723 FKVRGVFAHSQYNIGAQHD-NDIALFQLKQKVKFNDHLLPVCLPPPNY--ELAPGTRCTVIGWGKREDTRVSEYETAVNE 799 (897)
Q Consensus 723 ~~V~~IiiHP~Y~~~~t~~-nDIALLkL~~pi~fs~~V~PICLP~~~~--~~~~g~~c~vtGWG~t~~~~~~~~s~~L~~ 799 (897)
..|.++++||.|+. .... ||||||+|.+++.|+++|+|||||.... ....+..|+++|||.+... ....+..|++
T Consensus 87 ~~v~~~i~H~~y~~-~~~~~nDiall~l~~~v~~~~~i~piclp~~~~~~~~~~~~~~~v~GWG~~~~~-~~~~~~~L~~ 164 (256)
T KOG3627|consen 87 GDVEKIIVHPNYNP-RTLENNDIALLRLSEPVTFSSHIQPICLPSSADPYFPPGGTTCLVSGWGRTESG-GGPLPDTLQE 164 (256)
T ss_pred ceeeEEEECCCCCC-CCCCCCCEEEEEECCCcccCCcccccCCCCCcccCCCCCCCEEEEEeCCCcCCC-CCCCCceeEE
Confidence 55888999999984 4445 9999999999999999999999985543 2445589999999998654 1234678999
Q ss_pred EEEeeeChhHHHhhcCCCCCCccCCeEEeecCCCCcCCCCCCCCCceEEEecCCCCcEEEEEEEecCCC-CCCCCCCcEE
Q psy7167 800 VEVPIITRDICNKWLNNRELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIK-CAHPHLPGVY 878 (897)
Q Consensus 800 ~~v~vis~~~C~~~~~~~~~~it~~~iCAg~~~~~~d~C~GDSGGPLvc~~~~~~~~w~LvGIvS~G~~-C~~~~~PgVY 878 (897)
+.+++++...|...+.... .+++.||||+...++.++|+|||||||++... ++|+|+||+|||.+ |+..+.|+||
T Consensus 165 ~~v~i~~~~~C~~~~~~~~-~~~~~~~Ca~~~~~~~~~C~GDSGGPLv~~~~---~~~~~~GivS~G~~~C~~~~~P~vy 240 (256)
T KOG3627|consen 165 VDVPIISNSECRRAYGGLG-TITDTMLCAGGPEGGKDACQGDSGGPLVCEDN---GRWVLVGIVSWGSGGCGQPNYPGVY 240 (256)
T ss_pred EEEeEcChhHhcccccCcc-ccCCCEEeeCccCCCCccccCCCCCeEEEeeC---CcEEEEEEEEecCCCCCCCCCCeEE
Confidence 9999999999998776532 46677999997667788999999999999874 38999999999998 9998899999
Q ss_pred EecchhHHHHHHHHH
Q psy7167 879 AYVPKYVTWIQDIMD 893 (897)
Q Consensus 879 T~Vs~y~dWI~~~i~ 893 (897)
|+|+.|++||++.+.
T Consensus 241 t~V~~y~~WI~~~~~ 255 (256)
T KOG3627|consen 241 TRVSSYLDWIKENIG 255 (256)
T ss_pred eEhHHhHHHHHHHhc
Confidence 999999999999875
No 3
>smart00020 Tryp_SPc Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.
Probab=100.00 E-value=2.5e-36 Score=315.98 Aligned_cols=229 Identities=45% Similarity=0.831 Sum_probs=194.2
Q ss_pred eeeCCeecCCCCCceEEEEEcCCCceEEeeEEEEeCCeEEeecceeccCCCCcccceEEEeeeeeccCccccceEEEEEE
Q psy7167 648 RIIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRG 727 (897)
Q Consensus 648 RIvGG~~a~~ge~PW~VsL~~~~~~~~~CgGTLIs~~wVLTAAHC~~~~~~~~~~~~~V~lG~~~~~~~~~~~~~~~V~~ 727 (897)
||+||.++.+++|||+|.|+... ..+.|+||||+++||||||||+.... ...+.|++|........ ....+.|.+
T Consensus 1 ~~~~G~~~~~~~~Pw~~~i~~~~-~~~~C~GtlIs~~~VLTaahC~~~~~---~~~~~v~~g~~~~~~~~-~~~~~~v~~ 75 (229)
T smart00020 1 RIVGGSEANIGSFPWQVSLQYRG-GRHFCGGSLISPRWVLTAAHCVYGSD---PSNIRVRLGSHDLSSGE-EGQVIKVSK 75 (229)
T ss_pred CccCCCcCCCCCCCcEEEEEEcC-CCcEEEEEEecCCEEEECHHHcCCCC---CcceEEEeCcccCCCCC-CceEEeeEE
Confidence 68999999999999999998653 46889999999999999999997653 35688999977654321 237789999
Q ss_pred EeeCCCCCCCCCCCCceEEEEeccceecCCCceeeecCCCCCCCCCCCEEEEEEecccCCCCCccccccceEEEEeeeCh
Q psy7167 728 VFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITR 807 (897)
Q Consensus 728 IiiHP~Y~~~~t~~nDIALLkL~~pi~fs~~V~PICLP~~~~~~~~g~~c~vtGWG~t~~~~~~~~s~~L~~~~v~vis~ 807 (897)
+++||.|+. ....+|||||+|++|+.+++.++|||||.....+..+..+.++|||.... ........++...+.+++.
T Consensus 76 ~~~~p~~~~-~~~~~DiAll~L~~~i~~~~~~~pi~l~~~~~~~~~~~~~~~~g~g~~~~-~~~~~~~~~~~~~~~~~~~ 153 (229)
T smart00020 76 VIIHPNYNP-STYDNDIALLKLKSPVTLSDNVRPICLPSSNYNVPAGTTCTVSGWGRTSE-GAGSLPDTLQEVNVPIVSN 153 (229)
T ss_pred EEECCCCCC-CCCcCCEEEEEECcccCCCCceeeccCCCcccccCCCCEEEEEeCCCCCC-CCCcCCCEeeEEEEEEeCH
Confidence 999999984 56789999999999999999999999998755566789999999998765 2234456789999999999
Q ss_pred hHHHhhcCCCCCCccCCeEEeecCCCCcCCCCCCCCCceEEEecCCCCcEEEEEEEecCCCCCCCCCCcEEEecchhHHH
Q psy7167 808 DICNKWLNNRELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYVTW 887 (897)
Q Consensus 808 ~~C~~~~~~~~~~it~~~iCAg~~~~~~d~C~GDSGGPLvc~~~~~~~~w~LvGIvS~G~~C~~~~~PgVYT~Vs~y~dW 887 (897)
+.|...+... ..+.+.++|++......+.|.|||||||++.. + +|+|+||+|+|..|...+.|.+|++|..|++|
T Consensus 154 ~~C~~~~~~~-~~~~~~~~C~~~~~~~~~~c~gdsG~pl~~~~---~-~~~l~Gi~s~g~~C~~~~~~~~~~~i~~~~~W 228 (229)
T smart00020 154 ATCRRAYSGG-GAITDNMLCAGGLEGGKDACQGDSGGPLVCND---G-RWVLVGIVSWGSGCARPGKPGVYTRVSSYLDW 228 (229)
T ss_pred HHhhhhhccc-cccCCCcEeecCCCCCCcccCCCCCCeeEEEC---C-CEEEEEEEEECCCCCCCCCCCEEEEecccccc
Confidence 9999876542 25788999998765568899999999999875 2 89999999999999877889999999999999
Q ss_pred H
Q psy7167 888 I 888 (897)
Q Consensus 888 I 888 (897)
|
T Consensus 229 I 229 (229)
T smart00020 229 I 229 (229)
T ss_pred C
Confidence 8
No 4
>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine proteases belong to the MEROPS peptidase family S1 (chymotrypsin family, clan PA(S))and to peptidase family S6 (Hap serine peptidases). The chymotrypsin family is almost totally confined to animals, although trypsin-like enzymes are found in actinomycetes of the genera Streptomyces and Saccharopolyspora, and in the fungus Fusarium oxysporum []. The enzymes are inherently secreted, being synthesised with a signal peptide that targets them to the secretory pathway. Animal enzymes are either secreted directly, packaged into vesicles for regulated secretion, or are retained in leukocyte granules []. The Hap family, 'Haemophilus adhesion and penetration', are proteins that play a role in the interaction with human epithelial cells. The serine protease activity is localized at the N-terminal domain, whereas the binding domain is in the C-terminal region. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1SPJ_A 1A5I_A 2ZGH_A 2ZKS_A 2ZGJ_A 2ZGC_A 2ODP_A 2I6Q_A 2I6S_A 2ODQ_A ....
Probab=100.00 E-value=1.2e-34 Score=300.39 Aligned_cols=220 Identities=41% Similarity=0.874 Sum_probs=188.3
Q ss_pred eeCCeecCCCCCceEEEEEcCCCceEEeeEEEEeCCeEEeecceeccCCCCcccceEEEeeeeeccCccccceEEEEEEE
Q psy7167 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGV 728 (897)
Q Consensus 649 IvGG~~a~~ge~PW~VsL~~~~~~~~~CgGTLIs~~wVLTAAHC~~~~~~~~~~~~~V~lG~~~~~~~~~~~~~~~V~~I 728 (897)
|+||..+.+++|||+|.|+.... .++|+|+||+++||||||||+.. ...+.+++|...........+.+.|+++
T Consensus 1 i~~g~~~~~~~~p~~v~i~~~~~-~~~C~G~li~~~~vLTaahC~~~-----~~~~~v~~g~~~~~~~~~~~~~~~v~~~ 74 (220)
T PF00089_consen 1 IVGGDPASPGEFPWVVSIRYSNG-RFFCTGTLISPRWVLTAAHCVDG-----ASDIKVRLGTYSIRNSDGSEQTIKVSKI 74 (220)
T ss_dssp SBSSEECGTTSSTTEEEEEETTT-EEEEEEEEEETTEEEEEGGGHTS-----GGSEEEEESESBTTSTTTTSEEEEEEEE
T ss_pred CCCCEECCCCCCCeEEEEeeCCC-CeeEeEEeccccccccccccccc-----cccccccccccccccccccccccccccc
Confidence 78999999999999999987544 78999999999999999999976 2467888998444443334688999999
Q ss_pred eeCCCCCCCCCCCCceEEEEeccceecCCCceeeecCCCCCCCCCCCEEEEEEecccCCCCCccccccceEEEEeeeChh
Q psy7167 729 FAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRD 808 (897)
Q Consensus 729 iiHP~Y~~~~t~~nDIALLkL~~pi~fs~~V~PICLP~~~~~~~~g~~c~vtGWG~t~~~~~~~~s~~L~~~~v~vis~~ 808 (897)
++||.|+. ....+|||||+|++++.+.+.++|+||+.....+..+..+.++|||...... ....++...+.+++.+
T Consensus 75 ~~h~~~~~-~~~~~DiAll~L~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~G~~~~~~~~---~~~~~~~~~~~~~~~~ 150 (220)
T PF00089_consen 75 IIHPKYDP-STYDNDIALLKLDRPITFGDNIQPICLPSAGSDPNVGTSCIVVGWGRTSDNG---YSSNLQSVTVPVVSRK 150 (220)
T ss_dssp EEETTSBT-TTTTTSEEEEEESSSSEHBSSBEESBBTSTTHTTTTTSEEEEEESSBSSTTS---BTSBEEEEEEEEEEHH
T ss_pred cccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccc
Confidence 99999985 3468999999999999999999999999855556788999999999965543 3467899999999999
Q ss_pred HHHhhcCCCCCCccCCeEEeecCCCCcCCCCCCCCCceEEEecCCCCcEEEEEEEecCCCCCCCCCCcEEEecchhHHHH
Q psy7167 809 ICNKWLNNRELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYVTWI 888 (897)
Q Consensus 809 ~C~~~~~~~~~~it~~~iCAg~~~~~~d~C~GDSGGPLvc~~~~~~~~w~LvGIvS~G~~C~~~~~PgVYT~Vs~y~dWI 888 (897)
.|...+.. .+.+.++|++.. +..+.|.|||||||++... +|+||++++..|...+.|++|++|+.|++||
T Consensus 151 ~c~~~~~~---~~~~~~~c~~~~-~~~~~~~g~sG~pl~~~~~------~lvGI~s~~~~c~~~~~~~v~~~v~~~~~WI 220 (220)
T PF00089_consen 151 TCRSSYND---NLTPNMICAGSS-GSGDACQGDSGGPLICNNN------YLVGIVSFGENCGSPNYPGVYTRVSSYLDWI 220 (220)
T ss_dssp HHHHHTTT---TSTTTEEEEETT-SSSBGGTTTTTSEEEETTE------EEEEEEEEESSSSBTTSEEEEEEGGGGHHHH
T ss_pred cccccccc---cccccccccccc-cccccccccccccccccee------eecceeeecCCCCCCCcCEEEEEHHHhhccC
Confidence 99987443 378899999975 5689999999999998652 8999999999999988899999999999999
No 5
>cd07441 CRD_SFRP3 Cysteine-rich domain of the secreted frizzled-related protein 3 (SFRP3, alias FRZB), a Wnt antagonist. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related protein 3 (SFRP3, alias FRZB), which plays important roles in embryogenesis and postnatal development as an antagonist of Wnt proteins, key players in a number of fundamental cellular processes. SFRPs antagonize the activation of Wnt signaling by binding to the CRD domains of frizzled proteins (Fz), thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs. SFRP3 regulates Wnt signaling activity in bone development and homeostasis. It is also involved in the control of planar cell polarity.
Probab=99.98 E-value=9e-34 Score=268.81 Aligned_cols=121 Identities=23% Similarity=0.538 Sum_probs=112.8
Q ss_pred CcceEeccCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhhhccccchhhhhccccccCCCCCCC--CccccCCcc
Q psy7167 317 GKCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYELASLFLCAAMVPPCSSQ--GFFLRPCRS 394 (897)
Q Consensus 317 ~~C~pi~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~~--~~~i~PCrs 394 (897)
++|+||++++|++ |+||.|+|||+|||++|+||..++..|.+|++++||+++++||||+|+|+|+.. +++++|||+
T Consensus 2 a~CepI~~~~C~~--l~Yn~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCS~~~P~C~~~~~~~~i~PCRs 79 (126)
T cd07441 2 ASCEPVRIPMCKS--MPWNMTKMPNHLHHSTQANAVLAIEQFEGLLGTQCSPDLLFFLCAMYAPICTIDFQHEPIKPCKS 79 (126)
T ss_pred CcccccChhhhCC--CCcCcccCCcccCCCCHHHHHHHHHHHHHHhcCCCCccchhHHhhccCcccCCCCCCCcCCccHH
Confidence 6899999999997 999999999999999999999999999999999999999999999999999763 688999999
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCCCCCCCCccccccccchhh
Q psy7167 395 LCQETKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKCVGHKQVQE 442 (897)
Q Consensus 395 lCe~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~~~d~~Cig~~ec~~ 442 (897)
+|++++++|+++|..||+.||+.|+|++||...+ +.|+..+...+
T Consensus 80 lCe~vr~~C~~~m~~fg~~WP~~L~C~~fP~~~~---~~Ci~p~~~~~ 124 (126)
T cd07441 80 VCERARAGCEPVLIRYRHTWPESLACEELPVYDR---GVCISPEAIVT 124 (126)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcCCcccCCCCCC---CcCcChhhhcc
Confidence 9999999999999999999999999999998754 58998766543
No 6
>cd07442 CRD_SFRP4 Cysteine-rich domain of the secreted frizzled-related protein 4 (SFRP4), a Wnt antagonist. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related Protein 4 (SFRP4), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRDs domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs.
Probab=99.98 E-value=1.6e-33 Score=267.53 Aligned_cols=122 Identities=26% Similarity=0.570 Sum_probs=113.1
Q ss_pred CCcceEeccCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhhhccccchhhhhccccccCCCCCC--CCccccCCc
Q psy7167 316 KGKCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYELASLFLCAAMVPPCSS--QGFFLRPCR 393 (897)
Q Consensus 316 ~~~C~pi~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~--~~~~i~PCr 393 (897)
.++|+||++++|++ |+||.|+|||+|||++|+||+.++..|.+|++++||+++++||||+|+|.|+. .+++++|||
T Consensus 2 ~a~CepI~i~~C~~--l~Yn~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCS~~~P~C~~~~~~~~i~PCR 79 (127)
T cd07442 2 GAPCEAVRIPMCRH--MPWNITRMPNHLHHSTQENAVLAIEQYEELVDTGCSPVLPFFLCAMYAPICTLEFLYDPIKPCR 79 (127)
T ss_pred CCcccccChhhhCC--CCcCcccCcCccCCCCHHHHHHHHHHHHHHHcCCCCcchHHHHHhhcCCccCCCCCCCcCCccH
Confidence 47899999999997 99999999999999999999999999999999999999999999999999975 357899999
Q ss_pred cccccccccccccccccCCCCCCCCCCCCCCCCCCCCccccccccchhh
Q psy7167 394 SLCQETKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKCVGHKQVQE 442 (897)
Q Consensus 394 slCe~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~~~d~~Cig~~ec~~ 442 (897)
++|++++++|+++|+.||+.||+.|+|++||...+ +.|+..++..+
T Consensus 80 slCe~vr~~C~~~m~~fg~~WP~~L~C~~fP~~~~---~~Ci~p~~~~~ 125 (127)
T cd07442 80 SVCQRARDGCEPIMRRYNHSWPESLACDDLPVYDR---GVCISPEAIVT 125 (127)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCcCCcccCCCCCC---CcccCHHHhhc
Confidence 99999999999999999999999999999998654 58988766543
No 7
>cd07466 CRD_FZ7 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 7 (Fz7) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 7 (Fz7) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Xenopus Fz7 is important in Wnt/beta-catenin signaling pathways controlling the transcriptional activation of target genes Siamois and Xnr3 in the animal caps of late blastula.
Probab=99.97 E-value=2.6e-33 Score=266.27 Aligned_cols=119 Identities=30% Similarity=0.722 Sum_probs=112.1
Q ss_pred CCcceEeccCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhhhccccchhhhhccccccCCCCCCCCccccCCccc
Q psy7167 316 KGKCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYELASLFLCAAMVPPCSSQGFFLRPCRSL 395 (897)
Q Consensus 316 ~~~C~pi~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~~~~~i~PCrsl 395 (897)
.++|+||++++|++ ||||.|+|||+|||.+|+||..++..|.+|++++||+++++||||+|+|+|...+++++|||++
T Consensus 2 ~~~CepI~~~~C~~--l~Yn~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FlCsl~~P~C~~~~~~i~PCRsl 79 (125)
T cd07466 2 HGFCQPISIPLCTD--IAYNQTIMPNLLGHTNQEDAGLEVHQFYPLVKVQCSPELKFFLCSMYAPVCTVLEQAIPPCRSL 79 (125)
T ss_pred CCccccCCHHHhCC--CCCCcccCCcccCCCCHHHHHHHHHHHHHHHhCCCChhHHHHhhhccCCccCCCCCcCCCcHHH
Confidence 47899999999998 9999999999999999999999999999999999999999999999999997767899999999
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCCCCCCcccccccc
Q psy7167 396 CQETKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKCVGHK 438 (897)
Q Consensus 396 Ce~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~~~d~~Cig~~ 438 (897)
|++++++|+++|+.||+.||+.|+|++||+..+ +..|++..
T Consensus 80 Ce~vr~~C~~~m~~fg~~WP~~l~C~~fP~~~~--~~~Ci~~~ 120 (125)
T cd07466 80 CERARQGCEALMNKFGFQWPERLRCENFPVHGA--GEICVGQN 120 (125)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCCcccCCCCCC--CCcCcCCC
Confidence 999999999999999999999999999998765 37898654
No 8
>cd07464 CRD_FZ2 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 2 (Fz2) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 2 (Fz2) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz2 is involved in the Wnt/beta-catenin signaling pathway and in the activation of protein kinase C and calcium/calmodulin-dependent protein kinase (CaM kinase).
Probab=99.97 E-value=3.2e-33 Score=266.00 Aligned_cols=120 Identities=29% Similarity=0.724 Sum_probs=112.8
Q ss_pred CCcceEeccCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhhhccccchhhhhccccccCCCCCCCCccccCCccc
Q psy7167 316 KGKCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYELASLFLCAAMVPPCSSQGFFLRPCRSL 395 (897)
Q Consensus 316 ~~~C~pi~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~~~~~i~PCrsl 395 (897)
.++|+||.+++|++ ||||.|.|||+|||.+|+||.++++.|.+|++++||+++++||||+|+|+|...+++++|||++
T Consensus 2 ~~~CepI~~~~C~~--l~Yn~T~~PN~lgH~sq~ea~~~~~~f~pLv~~~Csp~l~~FlCSl~~P~C~~~~~~i~PCRsl 79 (127)
T cd07464 2 HGFCQPISIPLCTD--IAYNQTIMPNLLGHTNQEDAGLEVHQFYPLVKVQCSLELRFFLCSMYAPVCTVLEQAIPPCRSI 79 (127)
T ss_pred CCccccCChhhhCC--CCCCcccCCcccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHhhccCCccCCCCCcCCCcHHH
Confidence 47899999999998 9999999999999999999999999999999999999999999999999997667899999999
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy7167 396 CQETKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKCVGHKQ 439 (897)
Q Consensus 396 Ce~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~~~d~~Cig~~e 439 (897)
|++++++|+++|..||+.||+.|+|++||+... +..|++...
T Consensus 80 Ce~vr~~C~~~m~~fg~~WP~~l~C~~fP~~~~--~~~C~~~~~ 121 (127)
T cd07464 80 CERARQGCEALMNKFGFQWPERLRCENFPRHGA--EQICVGQNH 121 (127)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCCcccCCCCCC--CCcCCCCCC
Confidence 999999999999999999999999999999864 478987644
No 9
>cd07465 CRD_FZ1 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 1 (Fz1) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 1 (Fz1) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata.
Probab=99.97 E-value=4.4e-33 Score=265.35 Aligned_cols=120 Identities=31% Similarity=0.719 Sum_probs=112.7
Q ss_pred CCcceEeccCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhhhccccchhhhhccccccCCCCCCCCccccCCccc
Q psy7167 316 KGKCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYELASLFLCAAMVPPCSSQGFFLRPCRSL 395 (897)
Q Consensus 316 ~~~C~pi~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~~~~~i~PCrsl 395 (897)
.++|+||++++|++ |+||.|+|||+|||.+|+||+.++..|.+|++++||+++++||||+|+|.|...+++++|||++
T Consensus 2 ~~~Cepi~~~~C~~--l~Yn~T~~PN~lgh~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCSl~~P~C~~~~~~i~PCRsl 79 (127)
T cd07465 2 HGYCQPISIPLCTD--IAYNQTIMPNLLGHTNQEDAGLEVHQFYPLVKVQCSAELKFFLCSMYAPVCTVLEQALPPCRSL 79 (127)
T ss_pred CCeeeeCCHHHhCC--CCCCcccCCcccCCCCHHHHHHHHHHHHHHHhCCCChhhHhHhhhccCCcccCCCCcCCccHHH
Confidence 47899999999998 9999999999999999999999999999999999999999999999999997767899999999
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy7167 396 CQETKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKCVGHKQ 439 (897)
Q Consensus 396 Ce~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~~~d~~Cig~~e 439 (897)
|++++++|+++|+.||+.||+.|+|++||...+. ..|++...
T Consensus 80 Ce~vr~~C~~~m~~fg~~WP~~l~C~~fP~~~~~--~~C~~~~~ 121 (127)
T cd07465 80 CERARQGCEALMNKFGFQWPDTLRCEKFPVHGAG--ELCVGQNT 121 (127)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCCcccCCCCCCC--CcccCCCC
Confidence 9999999999999999999999999999987653 78986644
No 10
>cd07458 CRD_FZ1_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 1. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 1 (Fz1), frizzled 2 (Fz2), and frizzled 7 (Fz7) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=99.97 E-value=6.4e-33 Score=261.93 Aligned_cols=117 Identities=33% Similarity=0.780 Sum_probs=110.4
Q ss_pred CcceEeccCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhhhccccchhhhhccccccCCCCCCCCccccCCcccc
Q psy7167 317 GKCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYELASLFLCAAMVPPCSSQGFFLRPCRSLC 396 (897)
Q Consensus 317 ~~C~pi~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~~~~~i~PCrslC 396 (897)
++|+||++++|++ |+||.|+|||+|||.+|+||..+++.|.+|++++||+++++||||+|+|+|...+++++|||++|
T Consensus 1 ~~C~pi~~~~C~~--l~Yn~T~~PN~lgh~~q~ea~~~l~~~~pLv~~~C~p~l~~FlCsl~~P~C~~~~~~i~PCRslC 78 (119)
T cd07458 1 GKCEPITIPLCTD--IPYNMTIFPNLLGHTKQEDAGLEVHQFYPLVKVQCSPDLKFFLCSVYAPVCTVLERPIPPCRSLC 78 (119)
T ss_pred CccccCChHHhCC--CCCCccCCCCccCCCCHHHHHHHHHHHHHHHhCCCChhHHHHhhhccccccCCCCCcCCccHHHH
Confidence 4799999999998 99999999999999999999999999999999999999999999999999976678999999999
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCCCCCccccccc
Q psy7167 397 QETKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKCVGH 437 (897)
Q Consensus 397 e~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~~~d~~Cig~ 437 (897)
++++++|+++|+.||++||+.++|++||+..+ +..|++.
T Consensus 79 e~vr~~C~~~m~~~g~~WP~~l~C~~fP~~~~--~~~C~~~ 117 (119)
T cd07458 79 ESARQGCEALMNKFGFQWPESLDCEKFPVHGA--GDLCVGE 117 (119)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCcccCCCCCC--CCcCCCC
Confidence 99999999999999999999999999998764 3678854
No 11
>cd07449 CRD_FZ3 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 3 (Fz3) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 3 (Fz3) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz3 plays a vital role in the anterior-posterior guidance of commissural axons. Knockout mice without Fz3 show defects in fiber tracts in the rostral CNS.
Probab=99.97 E-value=8.3e-33 Score=262.28 Aligned_cols=117 Identities=32% Similarity=0.726 Sum_probs=109.6
Q ss_pred cceEeccCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhhhccccchhhhhccccccCCCCCCCCccccCCccccc
Q psy7167 318 KCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYELASLFLCAAMVPPCSSQGFFLRPCRSLCQ 397 (897)
Q Consensus 318 ~C~pi~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~~~~~i~PCrslCe 397 (897)
+|+||++++|++ |+||.|+|||++||.+|+||+.+++.|.+|++++||+++++||||+|+|+|.+.+++++|||++|+
T Consensus 4 ~CepI~~~~C~~--l~Yn~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCSly~P~C~~~~~~i~PCRslCe 81 (127)
T cd07449 4 SCEPITLRMCQD--LPYNTTFMPNLLNHYDQQTAALAMEPFHPMVNLECSRDFRPFLCALYAPVCMEYGRVTLPCRRLCQ 81 (127)
T ss_pred eeeeCChhhhCC--CCCCcccCCcccCCcCHHHHHHHHHhhcccccCCcChhhHhHhheeeccccCCCCCCCCCCHHHHH
Confidence 699999999998 999999999999999999999999999999999999999999999999999877788999999999
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCCCCCccccccc
Q psy7167 398 ETKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKCVGH 437 (897)
Q Consensus 398 ~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~~~d~~Cig~ 437 (897)
+++++|+++|+.||+.||+.|+|++||+..+ ++..|++.
T Consensus 82 ~vr~~C~~~m~~fg~~WP~~L~C~~fP~~~~-~~~~c~~~ 120 (127)
T cd07449 82 RAYSECSKLMEMFGVPWPEDMECSRFPDCDE-PYPRLVDL 120 (127)
T ss_pred HHHHHHHHHHHHhCCCCCCcCCcccCCCCCC-Cccccccc
Confidence 9999999999999999999999999998755 34567654
No 12
>cd07463 CRD_FZ9 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 9 (Fz9) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 9 (Fz9) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz9 may play a signaling role in lymphoid development and maturation, particularly at points where B cells undergo self-renewal prior to further differentiation.
Probab=99.97 E-value=1.1e-32 Score=262.73 Aligned_cols=121 Identities=24% Similarity=0.617 Sum_probs=112.7
Q ss_pred CCcceEeccCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhhhccccchhhhhccccccCCCCCC-CCccccCCcc
Q psy7167 316 KGKCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYELASLFLCAAMVPPCSS-QGFFLRPCRS 394 (897)
Q Consensus 316 ~~~C~pi~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~-~~~~i~PCrs 394 (897)
+++|+||++++|++ |+||.|+|||+|||.+|+||..++..|.+|++++||+++++||||+|+|.|.+ .+++++|||+
T Consensus 2 ~~~CepI~~~~C~~--l~Yn~T~~PN~lgh~sq~ea~~~~~~f~pLv~~~Csp~l~~FlCS~~~P~C~~~~~~~i~PCRs 79 (127)
T cd07463 2 AAKCQPVVIPMCRG--IGYNLTRMPNFLGHDSQREAAIKLNEFAPLVEYGCHVHLRFFLCSLYAPMCTDQVSTSIPACRP 79 (127)
T ss_pred CCccccCChhhhCC--CCcCcccCCcccCCcCHHHHHHHHHHHHHHHhcCCChhhHHHhhhccccccCCCCCCcCCccHH
Confidence 57899999999998 99999999999999999999999999999999999999999999999999976 4578999999
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy7167 395 LCQETKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKCVGHKQ 439 (897)
Q Consensus 395 lCe~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~~~d~~Cig~~e 439 (897)
+||+++++|+++|+.||+.||+.++|++||...+. +..|++...
T Consensus 80 lCe~vr~~C~~~m~~fg~~WP~~l~C~~fP~~~~~-~~~C~~~~~ 123 (127)
T cd07463 80 MCEQARQKCSPIMEQFNFGWPESLDCSRLPTRNDP-NALCMEAPE 123 (127)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcCChhhCCCCCCC-CcccCCCCc
Confidence 99999999999999999999999999999988763 578886643
No 13
>cd07460 CRD_FZ5 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 5 (Fz5) receptor.proteins. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 5 (Fz5) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz5 plays critical regulating roles in the yolk sac and placental angiogenesis, in the maturation of the Paneth cell phenotype, in governing the neural potential of progenitors in the developing retina, and in neuronal s
Probab=99.97 E-value=1.2e-32 Score=262.22 Aligned_cols=120 Identities=25% Similarity=0.553 Sum_probs=111.9
Q ss_pred CCcceEeccCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhhhccccchhhhhccccccCCCCCC-CCccccCCcc
Q psy7167 316 KGKCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYELASLFLCAAMVPPCSS-QGFFLRPCRS 394 (897)
Q Consensus 316 ~~~C~pi~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~-~~~~i~PCrs 394 (897)
+.+|+||++++|++ |+||.|+|||+|||.+|+||..+++.|.+|++++||+++++||||+|+|+|.+ .+++++|||+
T Consensus 2 ~~~CepI~~~~C~~--l~Yn~T~~PN~lgh~~q~ea~~~~~~f~pLv~~~Csp~l~~FlCS~~~P~C~~~~~~~i~PCRs 79 (127)
T cd07460 2 ALVCQEITVPMCKG--IGYNLTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLRFFLCSMYTPICLPDYRKPLPPCRS 79 (127)
T ss_pred CCEecccChhhhCC--CCCCcccCCCccCCCCHHHHHHHHHHHHHHHhCCCChhHHHHhhhccCccccCCCCCcCCccHH
Confidence 57899999999998 99999999999999999999999999999999999999999999999999975 4578999999
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCCCCCCCCcccccccc
Q psy7167 395 LCQETKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKCVGHK 438 (897)
Q Consensus 395 lCe~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~~~d~~Cig~~ 438 (897)
+|++++++|+++|+.||+.||+.++|++||+..+. +..|++..
T Consensus 80 lCe~vr~~C~~~m~~fg~~WP~~l~C~~fP~~~~~-~~~C~~~~ 122 (127)
T cd07460 80 VCERAKAGCSPLMRQYGFAWPERMNCDRLPVLGDP-ETLCMDYN 122 (127)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcCChhhCCCCCCC-CCccCCCC
Confidence 99999999999999999999999999999988663 57888653
No 14
>cd07462 CRD_FZ10 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 10 (Fz10) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 10 (Fz10) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. The cellular functon of Fz10 is unknown.
Probab=99.97 E-value=1.4e-32 Score=261.71 Aligned_cols=120 Identities=24% Similarity=0.646 Sum_probs=111.8
Q ss_pred CCcceEeccCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhhhccccchhhhhccccccCCCCCC-CCccccCCcc
Q psy7167 316 KGKCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYELASLFLCAAMVPPCSS-QGFFLRPCRS 394 (897)
Q Consensus 316 ~~~C~pi~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~-~~~~i~PCrs 394 (897)
.++|+||++++|++ |+||.|+|||+|||++|+||..++..|.+|++++||+++++||||+|+|+|.. ..++++|||+
T Consensus 2 ~~~C~pI~~~~C~~--l~Yn~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~C~p~l~~FlCsl~~P~C~~~~~~~i~PCRs 79 (127)
T cd07462 2 EGRCQPIEIPMCKD--IGYNMTRMPNLMGHENQREAAIQLHEFAPLVEYGCHSHLKFFLCSLYAPMCTEQVSTPIPACRV 79 (127)
T ss_pred CCeeeecChhhhCC--CCcCceeCCcccCCcCHHHHHHHHHHHHHHhccCCChhhHHHHHhccccccCCCCCCcCCccHH
Confidence 37899999999998 99999999999999999999999999999999999999999999999999976 4578999999
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCCCCCCCCcccccccc
Q psy7167 395 LCQETKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKCVGHK 438 (897)
Q Consensus 395 lCe~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~~~d~~Cig~~ 438 (897)
+||+++++|+++|+.||+.||+.++|++||+..+. +.+|++..
T Consensus 80 lCe~vr~~C~~~m~~~g~~WP~~l~C~~fP~~~~~-~~lc~~~~ 122 (127)
T cd07462 80 MCEQARLKCSPIMEQFNFKWPDSLDCSKLPNKNDP-NYLCMEAP 122 (127)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcCCcccCCCCCCC-CcccCCCC
Confidence 99999999999999999999999999999988763 46788653
No 15
>cd07461 CRD_FZ8 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 8 (Fz8) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 8 (Fz8) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Xenopus Fz8 is important in Wnt/beta-catenin signaling pathways controlling the transcriptional activation of target genes Siamois and Xnr3 in the animal caps of late blastula.
Probab=99.97 E-value=1.8e-32 Score=260.85 Aligned_cols=119 Identities=28% Similarity=0.656 Sum_probs=111.3
Q ss_pred CCcceEeccCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhhhccccchhhhhccccccCCCCCC-CCccccCCcc
Q psy7167 316 KGKCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYELASLFLCAAMVPPCSS-QGFFLRPCRS 394 (897)
Q Consensus 316 ~~~C~pi~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~-~~~~i~PCrs 394 (897)
..+|+||++++|++ ||||.|+|||+|||.+|+||..+++.|.+|++++||+++++||||+|+|+|.+ .+++++|||+
T Consensus 2 ~~~C~pI~~~~C~~--l~Yn~T~~PN~l~H~sq~ea~~~~~~f~pLv~~~Csp~l~~FlCSl~~P~C~~~~~~~i~PCRs 79 (125)
T cd07461 2 ELQCQEITVPLCKG--IGYNYTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSMYTPICLEDYKKPLPPCRS 79 (125)
T ss_pred CCcccccCHHHhCC--CCCCcccCCCccCCCCHHHHHHHHHHHHHHHhCCCChhHHHHhhhccCcccCCCCCCcCCccHH
Confidence 57899999999988 99999999999999999999999999999999999999999999999999976 4688999999
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCCCCCCCCccccccc
Q psy7167 395 LCQETKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKCVGH 437 (897)
Q Consensus 395 lCe~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~~~d~~Cig~ 437 (897)
+|++++++|+++|+.||+.||+.++|++||...+. +..|++.
T Consensus 80 lCe~vr~~C~~~m~~~g~~WP~~l~C~~fP~~~~~-~~~C~~~ 121 (125)
T cd07461 80 VCERAKAGCAPLMRQYGFPWPDRMRCDLLPEQGNP-DTLCMDY 121 (125)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcCChhhCCCCCCC-CCccCCC
Confidence 99999999999999999999999999999987653 4678855
No 16
>cd07454 CRD_LIN_17 Cysteine-rich domain (CRD) of LIN_17. A cysteine-rich domain (CRD) is an essential component of a number of cell surface receptors, which are involved in multiple signal transduction pathways, particularly in modulating the activity of the Wnt proteins, which play a fundamental role in the early development of metazoans. CRD is also found in secreted frizzled related proteins (SFRPs), which lack the transmembrane segment found in the frizzled protein. The CRD domain is also present in the alpha-1 chain of mouse type XVIII collagen, in carboxypeptidase Z, several receptor tyrosine kinases, and the mosaic transmembrane serine protease corin. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. CRD domains have also been identified in multiple tandem copies in a Dictyostelium discoideum protein. Very little is known about the mechanism by which CRD domains interact with the
Probab=99.97 E-value=2.4e-32 Score=259.59 Aligned_cols=117 Identities=31% Similarity=0.726 Sum_probs=109.5
Q ss_pred CCcceEeccCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhhhccccchhhhhccccccCCCCCC-CCccccCCcc
Q psy7167 316 KGKCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYELASLFLCAAMVPPCSS-QGFFLRPCRS 394 (897)
Q Consensus 316 ~~~C~pi~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~-~~~~i~PCrs 394 (897)
.++|+||.+++|++ ||||.|+|||+|||.+|+||+.+++.|.+|++++||+++++||||+|+|+|.. ..++++|||+
T Consensus 2 ~~~C~Pi~~~~C~~--l~Yn~T~~PN~lgh~~q~ea~~~~~~f~pLv~~~C~p~l~~FlCsl~~P~C~~~~~~~i~PCRs 79 (124)
T cd07454 2 KGKCIPIDIELCKD--LPYNYTYFPNTILHNDQHTLQTHTEHFKPLMKTKCHPHIHFFICSVFAPMCPIGMPQAVTSCKS 79 (124)
T ss_pred CCccccCChhhhCC--CCcCcccCCcccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHhhcccccccCCCCCCcCCCChh
Confidence 47899999999997 99999999999999999999999999999999999999999999999999976 4578999999
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCCCCCCCCcccccccc
Q psy7167 395 LCQETKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKCVGHK 438 (897)
Q Consensus 395 lCe~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~~~d~~Cig~~ 438 (897)
+|++++++|+++|..||++||+.++|++||+.. +.|+...
T Consensus 80 lCe~vr~~C~~~m~~fg~~WP~~l~C~~fP~~~----~~C~~p~ 119 (124)
T cd07454 80 VCEQVKADCFSILEEFGIGWPEPLNCAQFPDPP----ELCMKPT 119 (124)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCChhhCCCCC----CCCCCcc
Confidence 999999999999999999999999999999862 4788663
No 17
>cd07456 CRD_FZ5_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 5. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 5 (Fz5) and frizzled 8 (Fz8) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=99.97 E-value=3.4e-32 Score=257.60 Aligned_cols=117 Identities=25% Similarity=0.618 Sum_probs=109.9
Q ss_pred cceEeccCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhhhccccchhhhhccccccCCCCCC-CCccccCCcccc
Q psy7167 318 KCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYELASLFLCAAMVPPCSS-QGFFLRPCRSLC 396 (897)
Q Consensus 318 ~C~pi~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~-~~~~i~PCrslC 396 (897)
+|+||++++|++ ||||.|+|||++||.+|+||..++..|.+|++++||+++++||||+|+|+|.. .+++++|||++|
T Consensus 1 ~Cepi~~~~C~~--l~Yn~T~~PN~lgh~~q~ea~~~~~~~~pLv~~~Csp~l~~FlCsl~~P~C~~~~~~~i~PCRslC 78 (120)
T cd07456 1 KCEEITIPMCKG--IGYNMTYMPNQFNHDTQEEAGLEVHQFWPLVEIQCSPDLKFFLCSMYTPICLEDYDKPLPPCRSVC 78 (120)
T ss_pred CccccChhhhCC--CCCCcccCCCcCCCcCHHHHHHHHHHHHHHHhCCCChhHHHHhHhccCcccCCCCCCcCCccHHHH
Confidence 699999999998 99999999999999999999999999999999999999999999999999976 467899999999
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCCCCCccccccc
Q psy7167 397 QETKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKCVGH 437 (897)
Q Consensus 397 e~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~~~d~~Cig~ 437 (897)
++++++|+++|+.||+.||+.++|++||+..+. +..|++.
T Consensus 79 e~vr~~C~~~m~~~g~~WP~~l~C~~fP~~~~~-~~~C~~~ 118 (120)
T cd07456 79 ERARDGCAPIMRQYGFAWPERMSCDALPEGGDP-DNLCMDR 118 (120)
T ss_pred HHHHHHHHHHHHHhCCCCCCcCChhhCCCCCCC-CCccCCC
Confidence 999999999999999999999999999998763 4678754
No 18
>cd07457 CRD_FZ9_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 9. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 9 (Fz9) and frizzled 10 (Fz10) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=99.97 E-value=3.3e-32 Score=258.08 Aligned_cols=118 Identities=27% Similarity=0.660 Sum_probs=110.0
Q ss_pred CcceEeccCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhhhccccchhhhhccccccCCCCCC-CCccccCCccc
Q psy7167 317 GKCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYELASLFLCAAMVPPCSS-QGFFLRPCRSL 395 (897)
Q Consensus 317 ~~C~pi~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~-~~~~i~PCrsl 395 (897)
++|+||++++|++ ||||.|+|||+|||.+|+||+.+++.|.+|++++||+++++||||+|+|+|.+ .+++++|||++
T Consensus 1 ~~CepI~~~~C~~--l~Yn~T~~PN~lgh~~q~ea~~~~~~~~pLv~~~Csp~l~~FlCsl~~P~C~~~~~~~i~PCRsl 78 (121)
T cd07457 1 GKCERITIPMCQG--IGYNMTRMPNLLGHESQSEAAISIHEFAPLVQYGCAEHLRFFLCSLYAPMCTEQVSIPIPACRSM 78 (121)
T ss_pred CcCccCChHhhCC--CCCCceeCCCcCCCcCHHHHHHHHHHHHHHHhcCCChhHHHHhhhccCcccCCCCCCcCCccHHH
Confidence 4799999999998 99999999999999999999999999999999999999999999999999976 35789999999
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCCCCCCccccccc
Q psy7167 396 CQETKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKCVGH 437 (897)
Q Consensus 396 Ce~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~~~d~~Cig~ 437 (897)
|++++++|+++|+.||+.||+.++|++||+..+. +..|++.
T Consensus 79 Ce~vr~~C~~~m~~~g~~WP~~l~C~~fP~~~~~-~~~c~~~ 119 (121)
T cd07457 79 CEQARDKCSPIMEQFSFSWPDSLDCDRLPRKNDP-KDLCMEA 119 (121)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCCcccCCCCCCC-CCCcCCC
Confidence 9999999999999999999999999999988653 4678754
No 19
>cd07888 CRD_corin_2 One of two cysteine-rich domains of the corin protein, a type II transmembrane serine protease . The cysteine-rich domain (CRD) is an essential component of corin, a type II transmembrane serine protease which functions as the convertase of the pro-atrial natriuretic peptide (pro-ANP) in the heart. Corin contains two CRDs in its extracellular region, which play an important role in recognition of the physiological substrate, pro-ANP. This model characterizes the second (C-terminal) CRD.
Probab=99.97 E-value=3.1e-32 Score=258.38 Aligned_cols=118 Identities=31% Similarity=0.786 Sum_probs=108.1
Q ss_pred cceEeccCcccCCCCCCccccCCCCCCCCCHHHHHHh--HHhhhhhhccccchhhhhccccccCCCCCC-CCccccCCcc
Q psy7167 318 KCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTD--LEAYEAIIDVRCYELASLFLCAAMVPPCSS-QGFFLRPCRS 394 (897)
Q Consensus 318 ~C~pi~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~--~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~-~~~~i~PCrs 394 (897)
+|+||++++|++ ||||.|+|||+|||.+|+||+.+ +..|.+|++++||+++++||||+|+|+|+. .+++++|||+
T Consensus 1 ~CepI~~~~C~~--l~Yn~T~~PN~lgH~sq~ea~~~~~~~~f~pLv~~~Csp~l~~FlCsl~~P~C~~~~~~~i~PCRs 78 (122)
T cd07888 1 QCEPITLELCMN--LPYNTTRYPNYLGHRTQKEASISWESSLFPALVQTNCYKYLMFFACTILVPKCDPVTQQRIPPCRS 78 (122)
T ss_pred CCccCCHhhhCC--CCcCcccCCcccCCCCHHHHHHhhhHHHHHhHHhcCCChhHHHHHHhccCccccCCCCCCCCCcHH
Confidence 699999999997 99999999999999999999775 459999999999999999999999999976 4678999999
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCCCCCCCCcccccccc
Q psy7167 395 LCQETKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKCVGHK 438 (897)
Q Consensus 395 lCe~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~~~d~~Cig~~ 438 (897)
+||+++++|+++|..||+.||+.++|++||+..+. +..|+..+
T Consensus 79 lCe~vr~~C~~~m~~fg~~WP~~l~C~~fP~~~~~-~~~C~~p~ 121 (122)
T cd07888 79 LCRNSKERCESVLGIVGLQWPEDTDCAQFPEENSD-NQTCLLPD 121 (122)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcCccccCCCCCCC-CCcCCCCC
Confidence 99999999999999999999999999999987642 36788654
No 20
>cd07450 CRD_FZ6 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 6 (Fz6) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 6 (Fz6) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Frizzled 6 (Fz6) is expressed in the skin and hair follicles and controls hair patterning in mammals using a Fz-dependent tissue polarity system, which is similar to the one that patterns the Drosophila cuticle.
Probab=99.97 E-value=7.1e-32 Score=256.24 Aligned_cols=110 Identities=34% Similarity=0.733 Sum_probs=105.0
Q ss_pred CcceEeccCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhhhccccchhhhhccccccCCCCCCCCccccCCcccc
Q psy7167 317 GKCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYELASLFLCAAMVPPCSSQGFFLRPCRSLC 396 (897)
Q Consensus 317 ~~C~pi~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~~~~~i~PCrslC 396 (897)
-+|+||.+++|++ |+||.|+|||++||.+|+||..+++.|.+|++++||+++++||||+|+|+|.....+++|||++|
T Consensus 3 ~~CepI~~~~C~~--l~YN~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCS~~~P~C~~~~~~i~PCRslC 80 (127)
T cd07450 3 FTCEPITVPRCLK--MPYNMTFFPNLMGHYDQDIAAVEMEPFLPLANLRCSPNVHTFLCQAFVPTCTEQIHVVRPCRELC 80 (127)
T ss_pred ceeeeCChhhcCC--CCCCcccCCcccCCcCHHHHHHHHHHHHhHhccCCChhhhhheeeeecccccCCCCcCCCCHHHH
Confidence 3699999999998 99999999999999999999999999999999999999999999999999977667889999999
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCCC
Q psy7167 397 QETKRRCGFFFDVFGLPLPSMENCNLYPDDMK 428 (897)
Q Consensus 397 e~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~ 428 (897)
++++++|+++|..||+.||+.|+|++||++.+
T Consensus 81 e~vr~~C~~~m~~fg~~WP~~L~C~~fP~~~~ 112 (127)
T cd07450 81 EKVYSDCKKLIDTFGISWPEELECDRLQYCDE 112 (127)
T ss_pred HHHHHHHHHHHHHhCCCCCCcCCcccCCCCCC
Confidence 99999999999999999999999999997654
No 21
>cd07448 CRD_FZ4 Cysteine-rich Wnt-binding domain of the frizzled 4 (Fz4) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 4 (Fz4) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and the Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Frizzled 4 (Fz4) activates the Ca(2+)/calmodulin-dependent protein kinase II and protein kinase C of the Wnt/Ca(2+) signaling pathway during retinal angiogenesis. Mutations in Fz4 lead to familial exudative vitreoretinopathy (FEVR
Probab=99.97 E-value=1.2e-31 Score=255.97 Aligned_cols=119 Identities=30% Similarity=0.690 Sum_probs=110.9
Q ss_pred CcceEeccCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhhhccccchhhhhccccccCCCCCC-CCccccCCccc
Q psy7167 317 GKCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYELASLFLCAAMVPPCSS-QGFFLRPCRSL 395 (897)
Q Consensus 317 ~~C~pi~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~-~~~~i~PCrsl 395 (897)
.+|+||++++|++ ||||.|+|||+|||.+|+||+.+++.|.+|++++||+++++||||+|+|+|.. .+++++|||++
T Consensus 2 ~~Cepi~~~~C~~--l~Yn~T~~PN~lgh~sq~ea~~~l~~~~pLv~~~Csp~l~~flCsl~~P~C~~~~~~~i~PCRsl 79 (126)
T cd07448 2 RRCEPIRIEMCQG--LGYNVTRMPNLVGHELQTDAELQLQTFTPLIQYGCSSQLKFFLCSVYVPMCTEKVPVPIGPCRPL 79 (126)
T ss_pred CeeeeCCHHHhCC--CCcccccCCCcCCCcCHHHHHHHHHHHHHHhhcCCChhHHhHhhhccccccCCCCCCcCCcCHHH
Confidence 5799999999997 99999999999999999999999999999999999999999999999999976 35789999999
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCCCCCCcccccccc
Q psy7167 396 CQETKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKCVGHK 438 (897)
Q Consensus 396 Ce~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~~~d~~Cig~~ 438 (897)
|++++++|+++|..+|+.||+.++|++||...+. +..|+...
T Consensus 80 Ce~vr~~C~~~m~~~g~~WP~~l~C~~fP~~~~~-~~~C~~~~ 121 (126)
T cd07448 80 CLSVKKRCLPVLKEFGFPWPEALNCSKFPPQNNH-NHMCMEGP 121 (126)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCCcccCCCCCCC-CCccCCCC
Confidence 9999999999999999999999999999987663 46788653
No 22
>cd07444 CRD_SFRP5 Cysteine-rich domain of the secreted frizzled-related protein 5 (SFRP5), a regulator of Wnt activity. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related Protein 5 (SFRP5), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRD domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs.
Probab=99.97 E-value=1.6e-31 Score=254.05 Aligned_cols=116 Identities=27% Similarity=0.655 Sum_probs=108.0
Q ss_pred CCCcceEec--cCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhhhccccchhhhhccccccCCCCCCCCccccCC
Q psy7167 315 SKGKCVLLE--VKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYELASLFLCAAMVPPCSSQGFFLRPC 392 (897)
Q Consensus 315 ~~~~C~pi~--~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~~~~~i~PC 392 (897)
..++|+||+ +++|++ |+||.|+|||+|||.+|+||+.++..|.+|++++||+++++||||+|+|+|. +++++||
T Consensus 3 ~~~~C~pIp~~l~~C~~--l~Yn~T~~PN~lgH~~q~ea~~~~~~~~pLv~~~C~p~l~~FlCSl~~P~C~--~~~i~PC 78 (127)
T cd07444 3 KQPQCVDIPADLPLCHN--VGYKRMRLPNLLEHESMAEVKQQASSWVPLLAKRCHADTQVFLCSLFAPVCL--DRPIYPC 78 (127)
T ss_pred CCCCceECCCCchhhcC--CCCCceeCCcccCCCCHHHHHHHHHHHHHHHhcccCHHHHHHhhhhcCCCCC--CCCCCCc
Confidence 568899998 889987 9999999999999999999999999999999999999999999999999995 4789999
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCCCCCCCCcccccccc
Q psy7167 393 RSLCQETKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKCVGHK 438 (897)
Q Consensus 393 rslCe~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~~~d~~Cig~~ 438 (897)
|++||+++++|+++|+.||+.||+.++|++||+.. ++|+...
T Consensus 79 RslCe~vr~~C~~~m~~~g~~WP~~l~C~~fP~~~----~~C~~~~ 120 (127)
T cd07444 79 RSLCEAVRDSCAPVMESYGFPWPEMLHCHKFPLDN----DLCIAVQ 120 (127)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCChhhCCCCC----Ccccccc
Confidence 99999999999999999999999999999999752 3788653
No 23
>cd07446 CRD_SFRP2 Cysteine-rich domain of the secreted frizzled-related protein 2 (SFRP2), a regulator of Wnt activity. The cysteine-rich-domain (CRD) is an essential part of the secreted frizzled related protein 2 (SFRP2), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to CRD domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs. As a Wnt antagonist, SFRP2 regulates Nkx2.2 expression in the ventral spinal cord and anteroposterior axis elongation. SFRP2 also has a Wnt-independent function as an enhancer of procollagen cleavage by the TLD proteinases. SFRP2 binds both procollagen and TLD, thus facilitating the enzymatic reaction by bringing togeth
Probab=99.97 E-value=2.6e-31 Score=253.57 Aligned_cols=117 Identities=26% Similarity=0.627 Sum_probs=108.3
Q ss_pred CCcceEec--cCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhhhccccchhhhhccccccCCCCCC-CCccccCC
Q psy7167 316 KGKCVLLE--VKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYELASLFLCAAMVPPCSS-QGFFLRPC 392 (897)
Q Consensus 316 ~~~C~pi~--~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~-~~~~i~PC 392 (897)
+.+|+||+ +++|++ |+||.|+|||+|||.+|+||..++..|.+|++++||+++++||||+|+|+|.+ .+++++||
T Consensus 2 ~s~C~pI~~~l~~C~~--l~Yn~T~~PN~lgH~sq~ea~~~~~~~~pLv~~~C~p~l~~FlCSl~~P~C~~~~~~~i~PC 79 (128)
T cd07446 2 KSNCKPIPANMLLCHG--IEYTNMRLPNLLGHETMKEVLQQAGSWIPLVQKQCHPDTKKFLCSLFAPVCLDDLDEAIQPC 79 (128)
T ss_pred CCCceECCCCchhhcC--CCCCcccCCcccCCCCHHHHHHHHHHHHHHHhcCCChhhHHHhhhccCccccCCCCCcCCcc
Confidence 57899998 778877 99999999999999999999999999999999999999999999999999976 46899999
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCCCCCCCCcccccccc
Q psy7167 393 RSLCQETKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKCVGHK 438 (897)
Q Consensus 393 rslCe~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~~~d~~Cig~~ 438 (897)
|++|++++++|+++|..||+.||+.++|++||+.. +.|+...
T Consensus 80 RslCe~vr~~C~~~m~~~g~~WP~~l~C~~fP~~~----~~Ci~~~ 121 (128)
T cd07446 80 RSLCEAVKDGCAPVMSAFGFPWPDMLDCTRFPLDN----DLCIPPA 121 (128)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCcccCCCCC----CcccCcc
Confidence 99999999999999999999999999999999852 4787543
No 24
>cd07445 CRD_corin_1 One of two cysteine-rich domains of the corin protein, a type II transmembrane serine protease . The cysteine-rich domain (CRD) is an essential component of corin, a type II transmembrane serine protease which functions as the convertase of the pro-atrial natriuretic peptide (pro-ANP) in the heart. Corin contains two CRDs in its extracellular region, which play an important role in recognition of the physiological substrate, pro-ANP. This model characterizes the first (N-terminal) CRD.
Probab=99.97 E-value=1.9e-31 Score=252.70 Aligned_cols=111 Identities=25% Similarity=0.562 Sum_probs=104.3
Q ss_pred CCcceEeccCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhhhccccchhhhhccccccCCCCCCCC---ccccCC
Q psy7167 316 KGKCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYELASLFLCAAMVPPCSSQG---FFLRPC 392 (897)
Q Consensus 316 ~~~C~pi~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~~~---~~i~PC 392 (897)
.++|+||++++|++ |+||+|.|||++||.+ .||+.++..|.+|++++||+++++||||+|+|+|++.+ .+++||
T Consensus 2 ~~~CepI~i~~C~~--l~YN~T~~PN~lgh~~-~ea~~~l~~f~pLv~~~Csp~l~~FLCSlyaP~C~~~~~~~~~i~PC 78 (130)
T cd07445 2 TSACMNITHSQCQM--LPYHSTLKPSLLSVKN-MEMEKFLKFFSYLHRLSCYQHIMLFGCSLALPECISDGDDRHGLLPC 78 (130)
T ss_pred CCccccCChhhhCC--CCCccccCCccccccC-HHHHHHHHhhccccccCcChhhHHHhhhccCccccCCCCCCCcCCCC
Confidence 47899999999997 9999999999999987 59999999999999999999999999999999997643 579999
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCCCCCCC
Q psy7167 393 RSLCQETKRRCGFFFDVFGLPLPSMENCNLYPDDMKY 429 (897)
Q Consensus 393 rslCe~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~~ 429 (897)
|++|++++++|+++|+.||+.||+.|+|++||+..+.
T Consensus 79 RslCe~vr~~C~~~m~~fg~~WPe~L~C~~fP~~~~~ 115 (130)
T cd07445 79 RSFCEAAKEGCEPVLGMVNASWPDFLRCSQFRNNTET 115 (130)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcCCccccCCCCCC
Confidence 9999999999999999999999999999999998774
No 25
>cd07443 CRD_SFRP1 Cysteine-rich domain of the secreted frizzled-related protein 1 (SFRP1), a regulator of Wnt activity. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related protein 1 (SFRP1), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRDs domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs. SFRP1 is expressed in many tissues and is involved in the regulation of Wnt signaling in osteoblasts, leading to enhanced trabecular bone formation in adults; it has also been shown to control the gro
Probab=99.97 E-value=2.8e-31 Score=251.44 Aligned_cols=115 Identities=23% Similarity=0.638 Sum_probs=107.5
Q ss_pred CCCcceEec--cCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhhhccccchhhhhccccccCCCCCCCCccccCC
Q psy7167 315 SKGKCVLLE--VKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYELASLFLCAAMVPPCSSQGFFLRPC 392 (897)
Q Consensus 315 ~~~~C~pi~--~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~~~~~i~PC 392 (897)
.+++|+||+ +++|++ |+||.|+|||+|||.+|+||+.++..|.+|++++||+++++||||+|+|+|. +++++||
T Consensus 3 ~~~~C~pIp~~l~~C~~--l~Yn~T~~PN~lgH~sq~ea~~~~~~~~pLv~~~C~p~l~~FlCsl~~P~C~--~~~i~PC 78 (124)
T cd07443 3 KPPQCVDIPADLRLCHN--VGYKKMVLPNLLDHETMAEVKQQASSWVPLLNKNCHKGTQVFLCSLFAPVCL--DRPVYPC 78 (124)
T ss_pred CCCCceECCCchhhhcC--CCCCceeCccccCCCCHHHHHHHHHHHHHHHhccccHHHHHHhhheeccCCC--CCCCCCC
Confidence 568899998 889987 9999999999999999999999999999999999999999999999999995 4688999
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCCCCCCCCcccccccc
Q psy7167 393 RSLCQETKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKCVGHK 438 (897)
Q Consensus 393 rslCe~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~~~d~~Cig~~ 438 (897)
|++|++++++|+++|..||+.||+.++|++||+. +.||+..
T Consensus 79 RslCe~vr~~C~~~m~~~g~~WP~~L~C~~fP~~-----~~ci~~~ 119 (124)
T cd07443 79 RWLCEAVRDSCEPVMQFFGFYWPEMLKCDKFPEG-----EVCIAMT 119 (124)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCC-----CCccCCC
Confidence 9999999999999999999999999999999975 4588653
No 26
>cd07447 CRD_Carboxypeptidase_Z Cysteine-rich domain of carboxypeptidase Z, a member of the carboxypeptidase E family. The cysteine-rich-domain (CRD) is an essential part of carboxypeptidase Z, a member of the carboxypeptidase E family of metallocarboxypeptidases. This is a group of Zn-dependent enzymes implicated in the intra- and extracellular processing of proteins. Carboxypeptidase Z removes C-terminal basic amino acid residues from its substrates, particularly arginine. The CRD acts as a ligand-binding domain for Wnts involved in developmental processes. CPZ binds and may process Wnt-4, CPZ has also been found to enhance the induction of the homeobox gene Cdx1. During vertebrate embryogenesis, the CRD of CPZ upregulates Pax3, a Wnt reporter gene essential for patterning of somites and limb development.
Probab=99.96 E-value=3.2e-31 Score=252.71 Aligned_cols=117 Identities=26% Similarity=0.624 Sum_probs=106.5
Q ss_pred CcceEeccCcccCCCCCCccccCCCCCCCCCHHHHHHh-----HHhhhhhhccccchhhhhccccccCCCCCCCCccccC
Q psy7167 317 GKCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTD-----LEAYEAIIDVRCYELASLFLCAAMVPPCSSQGFFLRP 391 (897)
Q Consensus 317 ~~C~pi~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~-----~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~~~~~i~P 391 (897)
.+|+||.+++|++ ||||.|+|||++||.+|++|+.. +..|.+|++++||+++++||||+|+|+|.. +.+++|
T Consensus 2 ~~CepI~~~~C~~--l~Yn~T~~PN~lgH~sq~~~~~~~~~~~l~~f~pLv~~~C~p~l~~FLCSl~~P~C~~-~~~i~P 78 (128)
T cd07447 2 ATCTDLLLSYCSD--VSYTQTTFPNLLGHRSREVTEAGAEYLLLSVLHGLLGGECNPDIRLLGCSVLAPRCEN-DKVIKP 78 (128)
T ss_pred CcccCCChhhcCC--CCCCcccCCcccCCCCHHHHHhhhhHhHHHHHhhhhhcCcChhHHhHhhcccccccCC-CCccCC
Confidence 6899999999988 99999999999999999987643 679999999999999999999999999965 678999
Q ss_pred CccccccccccccccccccCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy7167 392 CRSLCQETKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKCVGHKQ 439 (897)
Q Consensus 392 CrslCe~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~~~d~~Cig~~e 439 (897)
||++|++++++|.++|..||+.||+.|+|++||+... +.|+...+
T Consensus 79 CRslCe~vr~~C~~~m~~fg~~WP~~L~C~~fP~~~~---~~c~~~~~ 123 (128)
T cd07447 79 CRSTCEALRKRCSHAFDAIQMAWPYFLDCDRFFAGEQ---EGCYDPLE 123 (128)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCcCccccCCCccC---CCccChHH
Confidence 9999999999999999999999999999999997644 56876533
No 27
>COG5640 Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.3e-29 Score=266.68 Aligned_cols=239 Identities=31% Similarity=0.540 Sum_probs=174.6
Q ss_pred CCceeeCCeecCCCCCceEEEEEcCC---CceEEeeEEEEeCCeEEeecceeccCCCCcccceEEEeeeeeccCccccce
Q psy7167 645 ARKRIIGGFESNPGDWPFLAALLGGP---EFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGT 721 (897)
Q Consensus 645 ~~~RIvGG~~a~~ge~PW~VsL~~~~---~~~~~CgGTLIs~~wVLTAAHC~~~~~~~~~~~~~V~lG~~~~~~~~~~~~ 721 (897)
...||+||..|..++||++|+|.... -..-+|||++|..|||||||||+...........+|..+..+. ...+
T Consensus 29 vs~rIigGs~Anag~~P~~VaLv~~isd~~s~tfCGgs~l~~RYvLTAAHC~~~~s~is~d~~~vv~~l~d~----Sq~~ 104 (413)
T COG5640 29 VSSRIIGGSNANAGEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCADASSPISSDVNRVVVDLNDS----SQAE 104 (413)
T ss_pred cceeEecCcccccccCchHHHHHhhcccccceeEeccceecceEEeeehhhccCCCCccccceEEEeccccc----cccc
Confidence 46799999999999999999996322 2456899999999999999999987653333333444443322 2467
Q ss_pred EEEEEEEeeCCCCCCCCCCCCceEEEEeccceecCCCceeeecCC-CC---CCCCCCCEEEEEEecccCCCCC---cccc
Q psy7167 722 RFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPP-PN---YELAPGTRCTVIGWGKREDTRV---SEYE 794 (897)
Q Consensus 722 ~~~V~~IiiHP~Y~~~~t~~nDIALLkL~~pi~fs~~V~PICLP~-~~---~~~~~g~~c~vtGWG~t~~~~~---~~~s 794 (897)
...|++|+.|..|. ..++.||||+++|.++...- .+ .|-+-. .+ ..+.........+||.+..... .+..
T Consensus 105 rg~vr~i~~~efY~-~~n~~ND~Av~~l~~~a~~p-r~-ki~~~~~sdt~l~sv~~~s~~~n~t~~~~~~~~v~~~~p~g 181 (413)
T COG5640 105 RGHVRTIYVHEFYS-PGNLGNDIAVLELARAASLP-RV-KITSFDASDTFLNSVTTVSPMTNGTFGVTTPSDVPRSSPKG 181 (413)
T ss_pred CcceEEEeeecccc-cccccCcceeeccccccccc-hh-heeeccCcccceecccccccccceeeeeeeecCCCCCCCcc
Confidence 78999999999998 46889999999999866421 01 111110 00 1223334556677876543321 1212
Q ss_pred ccceEEEEeeeChhHHHhhcCCC-----CCCccCCeEEeecCCCCcCCCCCCCCCceEEEecCCCCcEEEEEEEecCCC-
Q psy7167 795 TAVNEVEVPIITRDICNKWLNNR-----ELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIK- 868 (897)
Q Consensus 795 ~~L~~~~v~vis~~~C~~~~~~~-----~~~it~~~iCAg~~~~~~d~C~GDSGGPLvc~~~~~~~~w~LvGIvS~G~~- 868 (897)
..|+++.+..++...|...+... ...++. ||||.. ..++|+||||||++.... +...++||+|||.+
T Consensus 182 t~l~e~~v~fv~~stc~~~~g~an~~dg~~~lT~--~cag~~--~~daCqGDSGGPi~~~g~---~G~vQ~GVvSwG~~~ 254 (413)
T COG5640 182 TILHEVAVLFVPLSTCAQYKGCANASDGATGLTG--FCAGRP--PKDACQGDSGGPIFHKGE---EGRVQRGVVSWGDGG 254 (413)
T ss_pred ceeeeeeeeeechHHhhhhccccccCCCCCCccc--eecCCC--CcccccCCCCCceEEeCC---CccEEEeEEEecCCC
Confidence 47999999999999999877411 123343 999954 389999999999998764 45678999999998
Q ss_pred CCCCCCCcEEEecchhHHHHHHHHHhcCC
Q psy7167 869 CAHPHLPGVYAYVPKYVTWIQDIMDKYSY 897 (897)
Q Consensus 869 C~~~~~PgVYT~Vs~y~dWI~~~i~~~sy 897 (897)
|+.+..|+|||+|+.|.+||...|+..+|
T Consensus 255 Cg~t~~~gVyT~vsny~~WI~a~~~~l~~ 283 (413)
T COG5640 255 CGGTLIPGVYTNVSNYQDWIAAMTNGLSY 283 (413)
T ss_pred CCCCCcceeEEehhHHHHHHHHHhcCCCc
Confidence 99999999999999999999999887664
No 28
>cd07453 CRD_crescent Cysteine-rich domain of the crescent protein. The cysteine-rich domain (CRD) is an essential part of the crescent protein, a member of the secreted frizzled-related protein (SFRP) family, which regulates convergent extension movements (CEMs) during gastrulation and neurulation. Xenopus laevis crescent efficiently forms inhibitory complexes with Wnt5a and Wnt11, but this effect is cancelled in the presence of another member of the SFRP family, Frzb1. A potential role for Crescent in head formation is to regulate a non-canonical Wnt pathway positively in the adjacent posterior mesoderm, and negatively in the overlying anterior neuroectoderm.
Probab=99.96 E-value=1.8e-30 Score=248.90 Aligned_cols=115 Identities=24% Similarity=0.624 Sum_probs=105.8
Q ss_pred CcceEec--cCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhhhccccchhhhhccccccCCCCCCCCccccCCcc
Q psy7167 317 GKCVLLE--VKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYELASLFLCAAMVPPCSSQGFFLRPCRS 394 (897)
Q Consensus 317 ~~C~pi~--~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~~~~~i~PCrs 394 (897)
.+|++|+ +++|++ |+||.|+|||+|||.+|+||.+++..|.+|++++||+++++||||+|+|.|. +++++|||+
T Consensus 1 ~~C~~iP~~l~~C~~--l~Yn~T~~PN~lgH~sq~ea~~~~~~~~pLv~~~C~p~l~~FLCSl~~P~C~--~~~i~PCRs 76 (135)
T cd07453 1 SPCMRIPKSMALCYD--IGYSEMRIPNLLEHETMAEVIQQSSSWLPLLARECHPDARIFLCSLFAPICW--DRPIYPCRS 76 (135)
T ss_pred CCCccCCCcchhhCC--CCCCcccCCcccCCCCHHHHHHHHHHHHHHHhcCCChhhHHHhhhhcCccCC--CCCCCccHH
Confidence 3698887 667877 9999999999999999999999999999999999999999999999999996 789999999
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy7167 395 LCQETKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKCVGHKQ 439 (897)
Q Consensus 395 lCe~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~~~d~~Cig~~e 439 (897)
+||+++++|+++|+.||+.||+.++|++||+.. +.|+....
T Consensus 77 lCe~vr~~C~~~m~~~g~~WP~~l~C~~fP~~~----~~Ci~p~~ 117 (135)
T cd07453 77 LCEAVRSSCAPLMACYGYPWPEILHCDKFPVDH----DLCISPQF 117 (135)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCChhhCCCCC----CcccCCCC
Confidence 999999999999999999999999999999752 47886643
No 29
>cd07452 CRD_sizzled Cysteine-rich domain of the sizzled protein. The cysteine-rich domain (CRD) is an essential part of the sizzled protein, which regulates bone morphogenetic protein (Bmp) signaling by stabilizing chordin, and plays a critical role in the patterning of vertebrate and invertebrate embryos. Sizzled also functions in the ventral region as a Wnt inhibitor and modulates canonical Wnt signaling. Sizzled proteins belong to the secreted frizzled-related protein family (SFRP), and have be identified in the genomes of birds, fishes and frogs, but not mammals.
Probab=99.96 E-value=4.5e-30 Score=247.52 Aligned_cols=117 Identities=26% Similarity=0.627 Sum_probs=108.1
Q ss_pred CCCcceEec--cCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhhhccccchhhhhccccccCCCCCCCCccccCC
Q psy7167 315 SKGKCVLLE--VKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYELASLFLCAAMVPPCSSQGFFLRPC 392 (897)
Q Consensus 315 ~~~~C~pi~--~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~~~~~i~PC 392 (897)
..++|+||+ +++|++ |+||.|+|||+|||.+|+||..++..|.+|++++||+++++||||+|+|+|. +++++||
T Consensus 5 ~s~~C~pIp~~l~~C~~--l~Yn~T~~PN~lgH~sq~ea~~~~~~f~pLv~~~C~p~l~~FlCSl~~P~C~--~~~i~PC 80 (141)
T cd07452 5 LSTKCVPIPPEMSMCQD--VGYSEMRLPNLLGHTSMAEVVPKSADWQTLLHTGCHPHARTFLCSLFAPVCL--DTFIQPC 80 (141)
T ss_pred CCCcceeCCCcchhhcC--CCCCcccCCcccCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHhHhhcccCCC--CCCCcCC
Confidence 357899998 899987 9999999999999999999999999999999999999999999999999996 3678999
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCCCCCCCCccccccccc
Q psy7167 393 RSLCQETKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKCVGHKQ 439 (897)
Q Consensus 393 rslCe~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~~~d~~Cig~~e 439 (897)
|++|++++++|+++|..||+.||+.|+|++||... +.|++...
T Consensus 81 RslCe~vr~~C~~~m~~fg~~WP~~L~C~~fP~~~----~~C~~~~~ 123 (141)
T cd07452 81 RSMCVAVRDSCAPVLACHGHSWPESLDCDRFPAGE----DMCLASLS 123 (141)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCcccCCCCC----CccCCCCc
Confidence 99999999999999999999999999999999853 47887633
No 30
>smart00063 FRI Frizzled. Drosophila melanogaster frizzled mediates signalling that polarises a precursor cell along the anteroposterior axis. Homologues of the N-terminal region of frizzled exist either as transmembrane or secreted molecules. Frizzled homologues are reported to be receptors for the Wnt growth factors. (Not yet in MEDLINE: the FRI domain occurs in several receptor tyrosine kinases [Xu, Y.K. and Nusse, Curr. Biol. 8 R405-R406 (1998); Masiakowski, P. and Yanopoulos, G.D., Curr. Biol. 8, R407 (1998)].
Probab=99.96 E-value=2.9e-30 Score=242.88 Aligned_cols=112 Identities=31% Similarity=0.751 Sum_probs=105.2
Q ss_pred ceEeccCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhhhccccchhhhhccccccCCCCCCCCccccCCcccccc
Q psy7167 319 CVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYELASLFLCAAMVPPCSSQGFFLRPCRSLCQE 398 (897)
Q Consensus 319 C~pi~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~~~~~i~PCrslCe~ 398 (897)
|+||.+++|++ ++||.|+|||++||.+|+||..+++.|.+|++++||+++++||||+|+|+|.+.+.+++|||++|++
T Consensus 1 C~pi~~~~C~~--l~Yn~T~~PN~l~h~~q~ea~~~l~~~~~L~~~~C~p~l~~flCsl~~P~C~~~~~~~~PCRs~Ce~ 78 (113)
T smart00063 1 CEPITIPLCKD--LGYNLTSMPNLLGHTTQEEAGLELEQFHPLLNVQCSPDLRFFLCSVYAPICTEDLRPILPCRSLCEA 78 (113)
T ss_pred CcCCCcHhHCC--CCcccccCCCccCCCCHHHHHHHHHHHHhhccCCCChhHHHHhHhccCcccCCCCCcCCcCHHHHHH
Confidence 89999999998 9999999999999999999999999999999999999999999999999997755579999999999
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCCCCCCcccccc
Q psy7167 399 TKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKCVG 436 (897)
Q Consensus 399 ~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~~~d~~Cig 436 (897)
++++|+++|..+|+.||+.++|++||+.. +.|+.
T Consensus 79 vr~~C~~~~~~~g~~WP~~l~C~~fP~~~----~~C~~ 112 (113)
T smart00063 79 AREGCEPLMEKFGFPWPEFLRCDRFPVQE----ELCMD 112 (113)
T ss_pred HHHHHHHHHHHhCCCCCCcCCcccCCCCC----CCCCC
Confidence 99999999999999999999999999874 35653
No 31
>cd07455 CRD_Collagen_XVIII Cysteine-rich domain of the variant 3 of collagen XVIII (V3C18 ). The cysteine-rich domain (CRD) is an essential part of the variant 3 of collagen XVIII (V3C18), which regulates major cellular functions such as the differential epithelial morphogenesis of early lung and kidney development. V3C18 is a 170 kD protein, which is proteolotically processed into the CRD-containing 50 kD glucoprotein precursor that binds Wnt3a through its CRD domain and suppresses the Wnt3a-induced stabilization of beta catenin. Full-length V3C18 is unable to inhibit Wnt signaling.
Probab=99.95 E-value=3.6e-29 Score=236.23 Aligned_cols=114 Identities=22% Similarity=0.496 Sum_probs=103.7
Q ss_pred CCcceEe--ccCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhhhccccchhhhhccccccCCCCCC-CCccccCC
Q psy7167 316 KGKCVLL--EVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYELASLFLCAAMVPPCSS-QGFFLRPC 392 (897)
Q Consensus 316 ~~~C~pi--~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~-~~~~i~PC 392 (897)
+.+|+|| .+++|++ |+||.|+|||+|||++|+||+.++.+|.+|++++||+++++||||+|+|+|.+ ...+++||
T Consensus 2 ~~~C~pIp~~l~~C~~--l~Yn~t~~PN~lgH~sq~ea~~~~~~f~pLv~~~Csp~l~~FlCs~~~P~C~~~~~~~i~PC 79 (123)
T cd07455 2 RPRCLPVPSSLPFCSR--LGIRSFWLPNFLNHTSVEEVRAVLAEWAWLLESGCHPSLEWFFCLLLVPSCGGGPPPPPPPC 79 (123)
T ss_pred CCCCccCCCccccccC--CCcccccCCcccCCCCHHHHHHHHHHHHHHHhCCCChhhHHHhhhccCCcccCCCCCcCCcc
Confidence 5789999 7899987 99999999999999999999999999999999999999999999999999976 34679999
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCCCCCCCCcccccccc
Q psy7167 393 RSLCQETKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKCVGHK 438 (897)
Q Consensus 393 rslCe~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~~~d~~Cig~~ 438 (897)
|++||+++++|+++|+.||+ | ++|++||+..+ +.|+...
T Consensus 80 RslCe~vr~~C~~~m~~fg~--p--l~C~~fP~~~~---~~C~~~~ 118 (123)
T cd07455 80 RQFCEVLQDSCWNLLEGGRL--P--VACASLPEQED---GYCVLIG 118 (123)
T ss_pred HHHHHHHHHHHHHHHHccCC--C--ChHHHCCCCCC---cccccCC
Confidence 99999999999999998775 5 89999998865 6787543
No 32
>cd07451 CRD_SMO Cysteine-rich domain of the smoothened receptor (Smo) integral membrane protein. The cysteine-rich domain (CRD) is part of the smoothened receptor (Smo), an integral membrane protein and one of the key players in the Hedgehog (Hh) signaling pathway, critical for development, cell growth and migration, as well as stem cell maintenance. The CRD of Smo is conserved in vertebrates and can also be identified in invertebrates. The precise function of the CRD in Smo is unknown. Mutations in the Drosophila CRD disrupt Smo activity in vivo, while deletion of the CRD in mammalian cells does not seem to affect the activity of overexpressed Smo.
Probab=99.95 E-value=2e-28 Score=233.91 Aligned_cols=108 Identities=26% Similarity=0.525 Sum_probs=102.9
Q ss_pred CCcceEeccCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhhhcc-ccchhhhhccccccCCCCCCCCccccCCcc
Q psy7167 316 KGKCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDV-RCYELASLFLCAAMVPPCSSQGFFLRPCRS 394 (897)
Q Consensus 316 ~~~C~pi~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~Lv~~-~C~~~l~~FlCs~~~P~C~~~~~~i~PCrs 394 (897)
.++|+||++++|++..||||+|+|||+++|.+|+||+.+++.|.+|+++ +||+++++||||+|+|+|.. +++++|||+
T Consensus 2 ~~~Cepi~~~~C~g~~lpYn~T~~PN~~~h~tq~ea~~~l~~f~pLv~vp~C~~~l~~FLCSly~P~C~~-~~~~~PCRs 80 (132)
T cd07451 2 PAKCEPLKNTTCLGSKLPYTYTSLDLVPDSTTQEEVQEKLHLWSGLRNVPKCWAVIQPLLCALYMPKCEN-GKVELPSQE 80 (132)
T ss_pred CceeeECCccccCCCCCCccceecCCccCCcCHHHHHHHHHHHHHHHhhcccchhheeeeEeeECCcCCC-CCccCCCHH
Confidence 5789999999998888999999999999999999999999999999999 99999999999999999965 688999999
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCCCC
Q psy7167 395 LCQETKRRCGFFFDVFGLPLPSMENCNLYPDD 426 (897)
Q Consensus 395 lCe~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~ 426 (897)
+|+.++..|..+|..| .||+.|+|++||..
T Consensus 81 lCe~vr~~C~~~m~~~--~WP~~L~C~~~p~~ 110 (132)
T cd07451 81 MCQATRGPCKIVENER--GWPDFLRCDNDRFP 110 (132)
T ss_pred HHHHHHHHHHHHHHcC--CCCCcCcCCCCCCc
Confidence 9999999999999876 79999999999876
No 33
>KOG3577|consensus
Probab=99.92 E-value=1e-25 Score=264.77 Aligned_cols=167 Identities=24% Similarity=0.516 Sum_probs=135.3
Q ss_pred CCCCCCcceEeccCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhhhccccchhhhhccccccCCCCCC-CCcccc
Q psy7167 312 GNPSKGKCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYELASLFLCAAMVPPCSS-QGFFLR 390 (897)
Q Consensus 312 ~~~~~~~C~pi~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~-~~~~i~ 390 (897)
..+...+|+||+++||++ +|||+|.|||+++|++|+||+.+++.|.+|++.+||+++++||||+|+|.|++ ..++++
T Consensus 36 ~~~~~~~c~pi~i~~C~~--i~Yn~T~~PNll~H~tQ~ea~~~~~~f~PLv~~~Cs~~l~~FLCS~y~P~C~~~~d~pi~ 113 (556)
T KOG3577|consen 36 QAAGKARCEPITIPMCQG--LGYNMTAMPNLVGHETQEEAGLKLHQFHPLVALRCSPGLRFFLCSLYAPMCTEDLDRPIL 113 (556)
T ss_pred cccccccccceeccccCC--CCCCcccCCccccchhHHHhhhcccccCCccccccchhhhhHhhcCCCCcCccccCcccC
Confidence 345678899999999998 99999999999999999999999999999999999999999999999999984 789999
Q ss_pred CCccccccccccccccccccCCCCCCCCCCCCCCCCCCCCccccccccchhhhhhhcccCCCCCceEeCCCceecCcccc
Q psy7167 391 PCRSLCQETKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKCVGHKQVQEEKIRAMNKICLEGFQCDVNRCIPLDWQC 470 (897)
Q Consensus 391 PCrslCe~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~~~d~~Cig~~ec~~~~~~~~~~~c~~~f~C~~~~Ci~~~~~C 470 (897)
|||++||+++..|+++|..||+.||+.|+|+.||...+ ..+.|++.......... ..+...+.+..|.
T Consensus 114 PCRslCe~ar~~Ce~~m~~~gf~WPe~L~C~~fp~~~~-~~~~C~~~~~~~~~~~~---~~~~~~~~~~~g~-------- 181 (556)
T KOG3577|consen 114 PCRSLCEAAREGCEPLMEMFGFPWPEFLRCDKFPVPDS-AGELCMGPPSEGFAISA---GSAGVSVLPDFGG-------- 181 (556)
T ss_pred ccHHHHHHHhcccHHHHHhcCCCCCccccCCCCCCCCC-ccccccCCccccccCCC---CCCCCCCCCCCCC--------
Confidence 99999999999999999999999999999999998863 24789987554321111 1111112233332
Q ss_pred CCCCCCCCCCccCCCCCCCCCCcc
Q psy7167 471 DGHIDCQDQTDELNCEPCKADEIH 494 (897)
Q Consensus 471 DG~~DC~dgsDE~~C~~C~~~~f~ 494 (897)
+|..++...+||. |. |+...+.
T Consensus 182 ~~~~~~~~~~~~~-~~-~~~~~~~ 203 (556)
T KOG3577|consen 182 PGVVLAKPWSDEL-CQ-NPSNFVG 203 (556)
T ss_pred CccccCCCCcccc-cc-Ccccccc
Confidence 7777888888888 75 4544333
No 34
>cd07066 CRD_FZ CRD_domain cysteine-rich domain, also known as Fz (frizzled) domain. CRD_FZ is an essential component of a number of cell surface receptors, which are involved in multiple signal transduction pathways, particularly in modulating the activity of the Wnt proteins, which play a fundamental role in the early development of metazoans. CRD is also found in secreted frizzled related proteins (SFRPs), which lack the transmembrane segment found in the frizzled protein. The CRD domain is also present in the alpha-1 chain of mouse type XVIII collagen, in carboxypeptidase Z, several receptor tyrosine kinases, and the mosaic transmembrane serine protease corin. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. CRD domains have also been identified in multiple tandem copies in a Dictyostelium discoideum protein. Very little is known about the mechanism by which CRD domains interact wit
Probab=99.88 E-value=1e-23 Score=201.26 Aligned_cols=116 Identities=34% Similarity=0.799 Sum_probs=107.1
Q ss_pred cceEeccCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhhhccccchhhhhccccccCCCCCCCC-ccccCCcccc
Q psy7167 318 KCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYELASLFLCAAMVPPCSSQG-FFLRPCRSLC 396 (897)
Q Consensus 318 ~C~pi~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~~~-~~i~PCrslC 396 (897)
+|+||+.++|++ ++||.|.|||+++|.+|+||+..+..|.+|+..+||+++++|+|++|+|+|...+ .+++|||++|
T Consensus 1 ~C~pi~~~~C~~--~~Yn~t~~pn~~~~~~~~~a~~~~~~~~~l~~~~C~~~~~~f~Cs~~~P~C~~~~~~~~~PCRs~C 78 (119)
T cd07066 1 KCEPIPLPLCRG--LPYNTTRFPNLLGHESQEEAEQELESFTPLVNSGCHPDLRFFLCSLYFPECTPDGDRPIPPCRSLC 78 (119)
T ss_pred CCccCCHHHhCC--CCCCceeCCCccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHhccCccccCCCCCcCCChHHHH
Confidence 599999999998 8999999999999999999999999999999999999999999999999997643 5889999999
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCCCCCccccccc
Q psy7167 397 QETKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKCVGH 437 (897)
Q Consensus 397 e~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~~~d~~Cig~ 437 (897)
++++..|..++..+++.||..++|+.||+... ++.|...
T Consensus 79 eev~~~C~~~~~~~~~~wp~~~~C~~~p~~~~--~~~C~~p 117 (119)
T cd07066 79 EEVRDSCEPLMLAFGFPWPEPLDCDRFPDSNE--EGLCISP 117 (119)
T ss_pred HHHHHHHHHHHHHhCCCCCCcCCccccCCCCC--CCcCCCC
Confidence 99999999999999999999999999998754 3567643
No 35
>PF01392 Fz: Fz domain; InterPro: IPR020067 The frizzled (fz) domain is an extracellular domain of about 120 amino acids.It was first identified in the alpha-1 chain of type XVIII collagen and in members of the Frizzled family of seven transmembrane (7TM) proteins which act as receptors for secreted Wingless (Wg)/Wnt glycoproteins []. In addition to these proteins, one or two copies of the fz domain are also found [, , , , ] in: The frizbee (Frzb) family; secreted frizzled-like proteins. Smoothened; another 7TM receptor involved in hedgehog signaling. Carboxpeptidase Z (CPZ). Transmembrane serine protease corin. Two receptor tyrosine kinases (RTKs) subfamilies, the Ror family and the muscle-specific kinase (MuSK) family. As the fz domain contains 10 cysteines which are largely conserved, it has also been called cysteine-rich domain (CRD) []. The fz domain also contains several other highly conserved residues, for example, a basic amino acid follows C6, and a conserved proline residues lies four residues C-terminal to C9 []. The crystal structure of a fz domain shows that it is predominantly alpha-helical with all cysteines forming disulphide bonds. In addition to helical regions, two short beta-strands at the N terminus form a minimal beta-sheet with the second beta sheet passing through a knot created by disulphide bonds []. Several fz domains have been shown to be both necessary and sufficient for Wg/Wnt ligand binding, strongly suggesting that the fz domain is a Wg/Wnt interacting domain [, ].; GO: 0005515 protein binding; PDB: 1IJX_E 3HKL_B 1IJY_B 4F0A_A.
Probab=99.83 E-value=7.2e-22 Score=186.88 Aligned_cols=114 Identities=36% Similarity=0.781 Sum_probs=96.7
Q ss_pred ceEeccCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhhhccccchhhhhccccccCCCCCCCCc--cccCCcccc
Q psy7167 319 CVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYELASLFLCAAMVPPCSSQGF--FLRPCRSLC 396 (897)
Q Consensus 319 C~pi~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~Lv~~~C~~~l~~FlCs~~~P~C~~~~~--~i~PCrslC 396 (897)
|+||+.++|++ ++||.|.|||.++|.+|++++.++..|..|++.+||+++++|||++++|+|.+.+. +++|||++|
T Consensus 1 C~pi~~~~C~~--~~y~~t~~pn~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~flC~~~~P~C~~~~~~~~~~pCr~~C 78 (116)
T PF01392_consen 1 CEPITLSFCRG--LPYNQTSFPNSLGHQTQDEASQQLNAFSTLVNSGCHPYLRPFLCSLYFPPCDEGGPTPPLPPCRSLC 78 (116)
T ss_dssp EEE---GGGTT--SS-TEEESSETTTSSSHHHHHHHHHCCHHHHCCTSHTTHHHHHHHHHS-BBBSSSSSSB-EB-HHHH
T ss_pred CccCChHHhcC--CCCCceEeecccCCcCHHHHHHHHHHHHHHhcchhhHHHhhhhhcccCCcCCCCCcccccCCCHHHc
Confidence 89999999987 99999999999999999999999999999999999999999999999999976543 288999999
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCCCCCccccc
Q psy7167 397 QETKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKCV 435 (897)
Q Consensus 397 e~~~~~C~~~l~~~g~~wP~~l~Cd~fPd~~~~~d~~Ci 435 (897)
++++..|...+..++..||..++|+.||+..+ .+..|+
T Consensus 79 ~~v~~~C~~~~~~~~~~~~~~~~C~~lP~~~~-~~~~C~ 116 (116)
T PF01392_consen 79 EEVKSSCSPELENLGLGWPSFLDCSNLPESNS-DSESCI 116 (116)
T ss_dssp HHHHHHHHHHHHHTTTTTSGGG-GGGSS-TTT-STTCCB
T ss_pred cccccccHHHHHHhcCCCCCCCCcccCCCCCC-CCCCCC
Confidence 99999999999999999999999999998876 346664
No 36
>PF03761 DUF316: Domain of unknown function (DUF316) ; InterPro: IPR005514 This is a family of uncharacterised proteins from Caenorhabditis elegans.
Probab=99.57 E-value=1.1e-13 Score=151.21 Aligned_cols=221 Identities=20% Similarity=0.362 Sum_probs=140.9
Q ss_pred CCCCccccccCccCCceeeCCeecCCCCCceEEEEEcCC--CceEEeeEEEEeCCeEEeecceeccCCCC-----cccce
Q psy7167 632 QCGTRRHLHNNFKARKRIIGGFESNPGDWPFLAALLGGP--EFVFYCAGVLISDQWVLTAAHCVGNLTGL-----NIDEW 704 (897)
Q Consensus 632 ~CG~~~~~~~~~~~~~RIvGG~~a~~ge~PW~VsL~~~~--~~~~~CgGTLIs~~wVLTAAHC~~~~~~~-----~~~~~ 704 (897)
.||+... ....++.+|..+..++.||.|.+.... ....+++|||||+||||||+||+...... .....
T Consensus 30 ~CG~~~~-----~~~~~~~~g~~~~~~~~pW~v~v~~~~~~~~~~~~~gtlIS~RHiLtss~~~~~~~~~W~~~~~~~~~ 104 (282)
T PF03761_consen 30 TCGKKKL-----PYPSKVFNGTPAESGEAPWAVSVYTKNHNEGNYFSTGTLISPRHILTSSHCVMNDKSKWLNGEEFDNK 104 (282)
T ss_pred hcCCCCC-----CCcccccCCcccccCCCCCEEEEEeccCcccceecceEEeccCeEEEeeeEEEecccccccCcccccc
Confidence 5996543 234567899999999999999997432 23467899999999999999999743210 00000
Q ss_pred EEEee-------eee-----c----cCccccceEEEEEEEeeCCCC---CCCCCCCCceEEEEeccceecCCCceeeecC
Q psy7167 705 TVQLG-------VTR-----R----NSYAFFGTRFKVRGVFAHSQY---NIGAQHDNDIALFQLKQKVKFNDHLLPVCLP 765 (897)
Q Consensus 705 ~V~lG-------~~~-----~----~~~~~~~~~~~V~~IiiHP~Y---~~~~t~~nDIALLkL~~pi~fs~~V~PICLP 765 (897)
...-+ ... . ...........|+++++--.- .......++++||+|+++ ++..+.|+|||
T Consensus 105 ~C~~~~~~l~vP~~~l~~~~v~~~~~~~~~~~~~~~v~ka~il~~C~~~~~~~~~~~~~mIlEl~~~--~~~~~~~~Cl~ 182 (282)
T PF03761_consen 105 KCEGNNNHLIVPEEVLSKIDVRCCNCFSNGKCFSIKVKKAYILNGCKKIKKNFNRPYSPMILELEED--FSKNVSPPCLA 182 (282)
T ss_pred eeeCCCceEEeCHHHhccEEEEeecccccCCcccceeEEEEEEecCCCcccccccccceEEEEEccc--ccccCCCEEeC
Confidence 01100 000 0 000011233566776663222 112344579999999999 78899999999
Q ss_pred CCCCCCCCCCEEEEEEecccCCCCCccccccceEEEEeeeChhHHHhhcCCCCCCccCCeEEeecCCCCcCCCCCCCCCc
Q psy7167 766 PPNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVCAGYPEGGKDACQGDSGGP 845 (897)
Q Consensus 766 ~~~~~~~~g~~c~vtGWG~t~~~~~~~~s~~L~~~~v~vis~~~C~~~~~~~~~~it~~~iCAg~~~~~~d~C~GDSGGP 845 (897)
........+....+.|+. . . ..+....+.+.....|. ..++ .....|.||+|||
T Consensus 183 ~~~~~~~~~~~~~~yg~~--~-~------~~~~~~~~~i~~~~~~~------------~~~~-----~~~~~~~~d~Gg~ 236 (282)
T PF03761_consen 183 DSSTNWEKGDEVDVYGFN--S-T------GKLKHRKLKITNCTKCA------------YSIC-----TKQYSCKGDRGGP 236 (282)
T ss_pred CCccccccCceEEEeecC--C-C------CeEEEEEEEEEEeeccc------------eeEe-----cccccCCCCccCe
Confidence 877777777788888881 1 1 23445555554332211 1222 2357899999999
Q ss_pred eEEEecCCCCcEEEEEEEecCCC-CCCCCCCcEEEecchhHHHHHH
Q psy7167 846 LLCRSSHNFEQWFVGGIVSWGIK-CAHPHLPGVYAYVPKYVTWIQD 890 (897)
Q Consensus 846 Lvc~~~~~~~~w~LvGIvS~G~~-C~~~~~PgVYT~Vs~y~dWI~~ 890 (897)
|+-.. +++|+|+||.+.+.. |.. ....|.+|..|.+=|-+
T Consensus 237 lv~~~---~gr~tlIGv~~~~~~~~~~--~~~~f~~v~~~~~~IC~ 277 (282)
T PF03761_consen 237 LVKNI---NGRWTLIGVGASGNYECNK--NNSYFFNVSWYQDEICE 277 (282)
T ss_pred EEEEE---CCCEEEEEEEccCCCcccc--cccEEEEHHHhhhhhcc
Confidence 99887 489999999997763 332 15788999888765533
No 37
>PF09342 DUF1986: Domain of unknown function (DUF1986); InterPro: IPR015420 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found in serine endopeptidases belonging to MEROPS peptidase family S1A (clan PA). It is found in unusual mosaic proteins, which are encoded by the Drosophila nudel gene (see P98159 from SWISSPROT). Nudel is involved in defining embryonic dorsoventral polarity. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Nudel, pipe and windbeutel together trigger the protease cascade within the extraembryonic perivitelline compartment which induces dorsoventral polarity of the Drosophila embryo [].
Probab=99.32 E-value=2.7e-11 Score=125.35 Aligned_cols=118 Identities=22% Similarity=0.474 Sum_probs=92.7
Q ss_pred CCCCCceEEEEEcCCCceEEeeEEEEeCCeEEeecceeccCCCCcccceEEEeeeeecc--CccccceEEEEEEEeeCCC
Q psy7167 656 NPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQLGVTRRN--SYAFFGTRFKVRGVFAHSQ 733 (897)
Q Consensus 656 ~~ge~PW~VsL~~~~~~~~~CgGTLIs~~wVLTAAHC~~~~~~~~~~~~~V~lG~~~~~--~~~~~~~~~~V~~IiiHP~ 733 (897)
....|||.|.||.++ .+.|+|+||.+.|||++..|+.+.. ......+|.+|..+.. ...+.+|.+.|..+..-|
T Consensus 12 e~y~WPWlA~IYvdG--~~~CsgvLlD~~WlLvsssCl~~I~-L~~~YvsallG~~Kt~~~v~Gp~EQI~rVD~~~~V~- 87 (267)
T PF09342_consen 12 EDYHWPWLADIYVDG--RYWCSGVLLDPHWLLVSSSCLRGIS-LSHHYVSALLGGGKTYLSVDGPHEQISRVDCFKDVP- 87 (267)
T ss_pred ccccCcceeeEEEcC--eEEEEEEEeccceEEEeccccCCcc-cccceEEEEecCcceecccCCChheEEEeeeeeecc-
Confidence 346799999999754 5899999999999999999997643 2336678889876533 345567888887765432
Q ss_pred CCCCCCCCCceEEEEeccceecCCCceeeecCCCCCCCCCCCEEEEEEecc
Q psy7167 734 YNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPNYELAPGTRCTVIGWGK 784 (897)
Q Consensus 734 Y~~~~t~~nDIALLkL~~pi~fs~~V~PICLP~~~~~~~~g~~c~vtGWG~ 784 (897)
..+++||+|++|+.|+.+|+|+.||...........|..+|-..
T Consensus 88 -------~S~v~LLHL~~~~~fTr~VlP~flp~~~~~~~~~~~CVAVg~d~ 131 (267)
T PF09342_consen 88 -------ESNVLLLHLEQPANFTRYVLPTFLPETSNENESDDECVAVGHDD 131 (267)
T ss_pred -------ccceeeeeecCcccceeeecccccccccCCCCCCCceEEEEccc
Confidence 35899999999999999999999997555556667999998765
No 38
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....
Probab=98.78 E-value=3.5e-09 Score=79.90 Aligned_cols=33 Identities=48% Similarity=1.123 Sum_probs=25.7
Q ss_pred CCceEeCCCceecCccccCCCCCCCCCCccCCC
Q psy7167 453 LEGFQCDVNRCIPLDWQCDGHIDCQDQTDELNC 485 (897)
Q Consensus 453 ~~~f~C~~~~Ci~~~~~CDG~~DC~dgsDE~~C 485 (897)
.++|+|.++.||+..++|||+.||.||+||.+|
T Consensus 5 ~~~f~C~~~~CI~~~~~CDg~~DC~dgsDE~~C 37 (37)
T PF00057_consen 5 PGEFRCGNGQCIPKSWVCDGIPDCPDGSDEQNC 37 (37)
T ss_dssp TTEEEETTSSEEEGGGTTSSSCSSSSSTTTSSH
T ss_pred CCeeEcCCCCEEChHHcCCCCCCCCCCcccccC
Confidence 356888877788888888888888888888765
No 39
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure
Probab=98.71 E-value=6.3e-09 Score=77.63 Aligned_cols=32 Identities=53% Similarity=1.222 Sum_probs=29.5
Q ss_pred CceEeCCCceecCccccCCCCCCCCCCccCCC
Q psy7167 454 EGFQCDVNRCIPLDWQCDGHIDCQDQTDELNC 485 (897)
Q Consensus 454 ~~f~C~~~~Ci~~~~~CDG~~DC~dgsDE~~C 485 (897)
++|+|.+++||+..++|||+.||.|||||.+|
T Consensus 4 ~~f~C~~~~Ci~~~~~CDg~~DC~dgsDE~~C 35 (35)
T cd00112 4 NEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35 (35)
T ss_pred CeEEcCCCCeeCHHHcCCCccCCCCCcccccC
Confidence 68999999999999999999999999999876
No 40
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure
Probab=98.65 E-value=1.2e-08 Score=76.16 Aligned_cols=35 Identities=46% Similarity=1.038 Sum_probs=33.1
Q ss_pred CCCCCcccCCCceeccceecCCCCCCCCCCCcccc
Q psy7167 488 CKADEIHCGLNKCISDYHVCDGKVDCPWGQDERNC 522 (897)
Q Consensus 488 C~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~C 522 (897)
|+.++|+|.++.||+..++|||+.||+||+||.+|
T Consensus 1 C~~~~f~C~~~~Ci~~~~~CDg~~DC~dgsDE~~C 35 (35)
T cd00112 1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35 (35)
T ss_pred CCCCeEEcCCCCeeCHHHcCCCccCCCCCcccccC
Confidence 66789999999999999999999999999999876
No 41
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....
Probab=98.64 E-value=1.3e-08 Score=76.79 Aligned_cols=36 Identities=50% Similarity=1.111 Sum_probs=34.1
Q ss_pred CCCCCCcccCCCceeccceecCCCCCCCCCCCcccc
Q psy7167 487 PCKADEIHCGLNKCISDYHVCDGKVDCPWGQDERNC 522 (897)
Q Consensus 487 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~C 522 (897)
.|+..+|+|.++.||+..++|||+.||.||+||.+|
T Consensus 2 ~C~~~~f~C~~~~CI~~~~~CDg~~DC~dgsDE~~C 37 (37)
T PF00057_consen 2 TCPPGEFRCGNGQCIPKSWVCDGIPDCPDGSDEQNC 37 (37)
T ss_dssp SSSTTEEEETTSSEEEGGGTTSSSCSSSSSTTTSSH
T ss_pred cCcCCeeEcCCCCEEChHHcCCCCCCCCCCcccccC
Confidence 478899999999999999999999999999999887
No 42
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=98.62 E-value=2.5e-08 Score=100.13 Aligned_cols=66 Identities=32% Similarity=0.546 Sum_probs=60.2
Q ss_pred CceEeCCC-ce-ecCccccCCCCCCCCCCccCCCCCCCCCCcccCCC----ceeccceecCCCCC---CCCCCCc
Q psy7167 454 EGFQCDVN-RC-IPLDWQCDGHIDCQDQTDELNCEPCKADEIHCGLN----KCISDYHVCDGKVD---CPWGQDE 519 (897)
Q Consensus 454 ~~f~C~~~-~C-i~~~~~CDG~~DC~dgsDE~~C~~C~~~~f~C~~g----~Ci~~~~~CDg~~D---C~dgsDE 519 (897)
+.|.|.+| .= |+.++++|++-||+|||||-+-..|+.+.|+|.+. .-|+...+=||+.| |-|||||
T Consensus 36 ~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEPGTsAC~~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CCDGSDE 110 (176)
T PF12999_consen 36 GKFTCLDGSKIVIPFSQINDDYCDCPDGSDEPGTSACSNGKFYCENKGHIPRYIPSSRVNDGICDYDICCDGSDE 110 (176)
T ss_pred CceEecCCCCceecHHHccCcceeCCCCCCccccccCcCceEeeccCCCCCceeehhhhcCCcCcccccCCCCCC
Confidence 46999776 34 89999999999999999999988899999999875 68999999999999 9999999
No 43
>COG3591 V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]
Probab=98.58 E-value=6.7e-07 Score=95.21 Aligned_cols=201 Identities=19% Similarity=0.184 Sum_probs=108.5
Q ss_pred CCCCCceEEEEE-cCCCceEEeeEEEEeCCeEEeecceeccCCCCcccceEEEe-eeeeccCccccceEEEEEEEee--C
Q psy7167 656 NPGDWPFLAALL-GGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL-GVTRRNSYAFFGTRFKVRGVFA--H 731 (897)
Q Consensus 656 ~~ge~PW~VsL~-~~~~~~~~CgGTLIs~~wVLTAAHC~~~~~~~~~~~~~V~l-G~~~~~~~~~~~~~~~V~~Iii--H 731 (897)
....|||-+-.. ....+.+-|+|+||+++.||||+||+....... ....+.. |.... ......++.+.. .
T Consensus 45 dt~~~Py~av~~~~~~tG~~~~~~~lI~pntvLTa~Hc~~s~~~G~-~~~~~~p~g~~~~-----~~~~~~~~~~~~~~~ 118 (251)
T COG3591 45 DTTQFPYSAVVQFEAATGRLCTAATLIGPNTVLTAGHCIYSPDYGE-DDIAAAPPGVNSD-----GGPFYGITKIEIRVY 118 (251)
T ss_pred cCCCCCcceeEEeecCCCcceeeEEEEcCceEEEeeeEEecCCCCh-hhhhhcCCcccCC-----CCCCCceeeEEEEec
Confidence 456899977664 223344567779999999999999997654311 2223322 22211 122222333222 4
Q ss_pred CC-CCCCCCCCCceEEEEeccceecCCCceeeecCCCCCCCCCCCEEEEEEecccCCCCCccccccceEEEEeeeChhHH
Q psy7167 732 SQ-YNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDIC 810 (897)
Q Consensus 732 P~-Y~~~~t~~nDIALLkL~~pi~fs~~V~PICLP~~~~~~~~g~~c~vtGWG~t~~~~~~~~s~~L~~~~v~vis~~~C 810 (897)
|+ |........|+..+.|+....+...+...-++.... ...+....++||-.......... -....+..+.
T Consensus 119 ~g~~~~~d~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~d~i~v~GYP~dk~~~~~~~---e~t~~v~~~~---- 190 (251)
T COG3591 119 PGELYKEDGASYDVGEAALESGINIGDVVNYLKRNTASE-AKANDRITVIGYPGDKPNIGTMW---ESTGKVNSIK---- 190 (251)
T ss_pred CCceeccCCceeeccHHHhccCCCccccccccccccccc-cccCceeEEEeccCCCCcceeEe---eecceeEEEe----
Confidence 43 332334456666666664455555555444443332 33455588999854433110100 0011111111
Q ss_pred HhhcCCCCCCccCCeEEeecCCCCcCCCCCCCCCceEEEecCCCCcEEEEEEEecCCCCCCCCCCcEEEec-chhHHHHH
Q psy7167 811 NKWLNNRELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYV-PKYVTWIQ 889 (897)
Q Consensus 811 ~~~~~~~~~~it~~~iCAg~~~~~~d~C~GDSGGPLvc~~~~~~~~w~LvGIvS~G~~C~~~~~PgVYT~V-s~y~dWI~ 889 (897)
... ..-..|++.|+||+|++.... +|+||..-|..-.......-.+++ ..+++||+
T Consensus 191 ------------~~~-----l~y~~dT~pG~SGSpv~~~~~------~vigv~~~g~~~~~~~~~n~~vr~t~~~~~~I~ 247 (251)
T COG3591 191 ------------GNK-----LFYDADTLPGSSGSPVLISKD------EVIGVHYNGPGANGGSLANNAVRLTPEILNFIQ 247 (251)
T ss_pred ------------cce-----EEEEecccCCCCCCceEecCc------eEEEEEecCCCcccccccCcceEecHHHHHHHH
Confidence 110 112468999999999997642 799999988763322222334444 55789999
Q ss_pred HHHH
Q psy7167 890 DIMD 893 (897)
Q Consensus 890 ~~i~ 893 (897)
+.++
T Consensus 248 ~~~~ 251 (251)
T COG3591 248 QNIK 251 (251)
T ss_pred HhhC
Confidence 8764
No 44
>smart00192 LDLa Low-density lipoprotein receptor domain class A. Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.
Probab=98.32 E-value=3.6e-07 Score=67.28 Aligned_cols=28 Identities=64% Similarity=1.369 Sum_probs=22.4
Q ss_pred ceEeCCCceecCccccCCCCCCCCCCcc
Q psy7167 455 GFQCDVNRCIPLDWQCDGHIDCQDQTDE 482 (897)
Q Consensus 455 ~f~C~~~~Ci~~~~~CDG~~DC~dgsDE 482 (897)
+|+|.++.|||..++|||+.||.||+||
T Consensus 6 ~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 6 EFQCDNGRCIPLSWVCDGVDDCSDGSDE 33 (33)
T ss_pred eEECCCCCEECchhhCCCcCcCcCCCCC
Confidence 6788777788888888888888888877
No 45
>smart00192 LDLa Low-density lipoprotein receptor domain class A. Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.
Probab=98.23 E-value=6.3e-07 Score=66.00 Aligned_cols=32 Identities=44% Similarity=0.896 Sum_probs=30.2
Q ss_pred CCCCCcccCCCceeccceecCCCCCCCCCCCc
Q psy7167 488 CKADEIHCGLNKCISDYHVCDGKVDCPWGQDE 519 (897)
Q Consensus 488 C~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE 519 (897)
|+..+|+|.++.||+..++|||+.||.||+||
T Consensus 2 C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 2 CPPGEFQCDNGRCIPLSWVCDGVDDCSDGSDE 33 (33)
T ss_pred CCCCeEECCCCCEECchhhCCCcCcCcCCCCC
Confidence 66679999999999999999999999999998
No 46
>PF15494 SRCR_2: Scavenger receptor cysteine-rich domain
Probab=98.10 E-value=4.8e-06 Score=76.96 Aligned_cols=94 Identities=18% Similarity=0.441 Sum_probs=59.0
Q ss_pred cceeeeecCCCCceeecccccCCCCCChhHHHhhcCCccccccceeeccccccccccceeeecccCCCCC-CCCcccccc
Q psy7167 534 KGVLELYRPEHKTFHTSCITKYDPDNSPRAICARLGYTQVNHTELIREKPLTKMRHTGHQLDVSYNLPYS-PYNDSMLKL 612 (897)
Q Consensus 534 ~~~l~v~~~~~~~w~~vC~dgw~~~~sa~~iC~~lGy~~~~~t~~i~~~~~~~~~~~~~~~~~~~n~~~~-~~~~~~~~~ 612 (897)
+.+||||....+.|.++|.++|+... +..+|++|||.....+..+........ ..+.+...+.... .....+...
T Consensus 3 ~s~LQV~~~~~~~W~~VC~d~W~~~~-s~~~C~qLGy~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~l~~~~~~~ 78 (98)
T PF15494_consen 3 NSLLQVYSAASGSWLPVCSDNWNEAL-SKAACQQLGYSSSSSSSSVNLSDISPS---PSQSFVKLSSNSNSTLQQSLSPS 78 (98)
T ss_pred CcEEEEEecCCCCEeeecccccCHHH-HHHHHHHhCCCCCCccceeEeccCCcc---cccCeEEEecCCCCceEEEEecC
Confidence 56899999999999999999999665 599999999987655544322111100 0011111111111 111223456
Q ss_pred cccCCCCCCCccccccccCCCCCc
Q psy7167 613 KACNDDDDYPQLELTCTNIQCGTR 636 (897)
Q Consensus 613 ~~C~~~~~~~~~~l~C~~~~CG~~ 636 (897)
..|.++ .++.|+|. +||+|
T Consensus 79 ~~C~S~---~vVsL~C~--~CG~r 97 (98)
T PF15494_consen 79 SSCSSG---SVVSLQCS--DCGKR 97 (98)
T ss_pred CCCCCC---CEEEEECc--ccCCc
Confidence 778775 48899998 89986
No 47
>KOG1215|consensus
Probab=97.48 E-value=0.00012 Score=92.78 Aligned_cols=72 Identities=44% Similarity=0.912 Sum_probs=64.6
Q ss_pred CCceEeCCC-ceecCccccCCCCCCCCCCccC--CCC--CCCCCCcccCCCceeccceecCCCCCCCCCCCcccccc
Q psy7167 453 LEGFQCDVN-RCIPLDWQCDGHIDCQDQTDEL--NCE--PCKADEIHCGLNKCISDYHVCDGKVDCPWGQDERNCLQ 524 (897)
Q Consensus 453 ~~~f~C~~~-~Ci~~~~~CDG~~DC~dgsDE~--~C~--~C~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~C~~ 524 (897)
...++|..+ .||...+.|||..||.+++||- +|. .|...++.|.++.|++....|||..||+||+||..|..
T Consensus 220 ~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~g~~d~pdg~de~~~~~ 296 (877)
T KOG1215|consen 220 IEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCEAPEIECADGDCSDRQKLCDGDLDCPDGLDEDYCKK 296 (877)
T ss_pred eeEEEecCCCcEEeehhccCCCcccccCCcCceeEeeccccCCcceeecCCCCccceEEecCccCCCCccccccccc
Confidence 356899874 9999999999999999999994 664 38889999999999999999999999999999997764
No 48
>KOG1215|consensus
Probab=97.37 E-value=9.7e-05 Score=93.58 Aligned_cols=70 Identities=46% Similarity=0.974 Sum_probs=58.6
Q ss_pred CCCCceEeC--CCceecCccccCCCCCCCCCCccCCCCC----C------------------------------------
Q psy7167 451 ICLEGFQCD--VNRCIPLDWQCDGHIDCQDQTDELNCEP----C------------------------------------ 488 (897)
Q Consensus 451 ~c~~~f~C~--~~~Ci~~~~~CDG~~DC~dgsDE~~C~~----C------------------------------------ 488 (897)
+|..+|.|. +..|||..|+|||..||.||+||..|.. +
T Consensus 138 ~~~~~~~c~~~~~~Cip~~~~cd~~~~C~dg~de~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~ 217 (877)
T KOG1215|consen 138 CCLDKFSCRTGSCKCIPGDWLCDGEADCPDGSDELNCAVRRCEPRGASLDCIVAIKVCDIQHDCADDYDESEGRIYWTDD 217 (877)
T ss_pred ccCCCCCCcCccccCCCCceeCCCCCccccchhhhcccccccCccccccccceeeeecCcccccccccccccCcccccCC
Confidence 456789998 7899999999999999999999998851 1
Q ss_pred -CCCCcccCCC-ceeccceecCCCCCCCCCCCcc
Q psy7167 489 -KADEIHCGLN-KCISDYHVCDGKVDCPWGQDER 520 (897)
Q Consensus 489 -~~~~f~C~~g-~Ci~~~~~CDg~~DC~dgsDE~ 520 (897)
....++|..+ .||...+.|||..||.+++||.
T Consensus 218 ~~~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~ 251 (877)
T KOG1215|consen 218 SRIEVTRCDGSSRCILISEVCDGPRDCVDGPDEG 251 (877)
T ss_pred cceeEEEecCCCcEEeehhccCCCcccccCCcCc
Confidence 1245677764 8999999999999999999984
No 49
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.28 E-value=0.004 Score=72.60 Aligned_cols=84 Identities=32% Similarity=0.382 Sum_probs=55.9
Q ss_pred EEeeEEEEeCC-eEEeecceeccCCCCcccceEEEeeeeeccCccccceEEEEEEEeeCCCCCCCCCCCCceEEEEeccc
Q psy7167 674 FYCAGVLISDQ-WVLTAAHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQK 752 (897)
Q Consensus 674 ~~CgGTLIs~~-wVLTAAHC~~~~~~~~~~~~~V~lG~~~~~~~~~~~~~~~V~~IiiHP~Y~~~~t~~nDIALLkL~~p 752 (897)
..++|.+|+++ ||||++|.+.+. ..+.|.+.. ...+..+-+..++ ..||||||++.+
T Consensus 58 ~~GSGfii~~~G~IlTn~Hvv~~~-----~~i~V~~~~---------~~~~~a~vv~~d~--------~~DlAllkv~~~ 115 (428)
T TIGR02037 58 GLGSGVIISADGYILTNNHVVDGA-----DEITVTLSD---------GREFKAKLVGKDP--------RTDIAVLKIDAK 115 (428)
T ss_pred ceeeEEEECCCCEEEEcHHHcCCC-----CeEEEEeCC---------CCEEEEEEEEecC--------CCCEEEEEecCC
Confidence 47999999976 999999999754 334554431 2334444333332 359999999864
Q ss_pred eecCCCceeeecCCCCCCCCCCCEEEEEEecc
Q psy7167 753 VKFNDHLLPVCLPPPNYELAPGTRCTVIGWGK 784 (897)
Q Consensus 753 i~fs~~V~PICLP~~~~~~~~g~~c~vtGWG~ 784 (897)
..+.++-|... ..+..|+.++++|+..
T Consensus 116 ----~~~~~~~l~~~-~~~~~G~~v~aiG~p~ 142 (428)
T TIGR02037 116 ----KNLPVIKLGDS-DKLRVGDWVLAIGNPF 142 (428)
T ss_pred ----CCceEEEccCC-CCCCCCCEEEEEECCC
Confidence 24556667543 2467899999999864
No 50
>KOG2397|consensus
Probab=97.14 E-value=0.00028 Score=80.39 Aligned_cols=68 Identities=31% Similarity=0.466 Sum_probs=60.9
Q ss_pred CceEeCCC-ceecCccccCCCCCCCCCCccCCCCCCCCCCcccCCC----ceeccceecCCCCCCCCCCCccc
Q psy7167 454 EGFQCDVN-RCIPLDWQCDGHIDCQDQTDELNCEPCKADEIHCGLN----KCISDYHVCDGKVDCPWGQDERN 521 (897)
Q Consensus 454 ~~f~C~~~-~Ci~~~~~CDG~~DC~dgsDE~~C~~C~~~~f~C~~g----~Ci~~~~~CDg~~DC~dgsDE~~ 521 (897)
..|.|.++ .=|+..++=|++-||.||+||-+-..|+++.|+|.+. .-|+...+=||+.||-||+||..
T Consensus 43 ~~~~CLdgs~~i~f~qlNDd~CDC~DGsDEPGtsACpngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~~ 115 (480)
T KOG2397|consen 43 SMFKCLDGSKTISFSQLNDDSCDCLDGSDEPGTSACPNGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEYL 115 (480)
T ss_pred cceeeccCCcccCHHHhccccccCCCCCCCCccccCCCCceeeeecCCCceeeechhccCcccccccCCCCcc
Confidence 35889776 6789999999999999999998888899999999763 58999999999999999999964
No 51
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.02 E-value=0.029 Score=63.80 Aligned_cols=83 Identities=22% Similarity=0.272 Sum_probs=52.4
Q ss_pred EEeeEEEEeCC-eEEeecceeccCCCCcccceEEEeeeeeccCccccceEEEEEEEeeCCCCCCCCCCCCceEEEEeccc
Q psy7167 674 FYCAGVLISDQ-WVLTAAHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQK 752 (897)
Q Consensus 674 ~~CgGTLIs~~-wVLTAAHC~~~~~~~~~~~~~V~lG~~~~~~~~~~~~~~~V~~IiiHP~Y~~~~t~~nDIALLkL~~p 752 (897)
...+|.+|+++ +|||++|-+... ..+.|.+. ++..+..+-+..++ ..||||||++.+
T Consensus 78 ~~GSG~vi~~~G~IlTn~HVV~~~-----~~i~V~~~---------dg~~~~a~vv~~d~--------~~DlAvlkv~~~ 135 (351)
T TIGR02038 78 GLGSGVIMSKEGYILTNYHVIKKA-----DQIVVALQ---------DGRKFEAELVGSDP--------LTDLAVLKIEGD 135 (351)
T ss_pred ceEEEEEEeCCeEEEecccEeCCC-----CEEEEEEC---------CCCEEEEEEEEecC--------CCCEEEEEecCC
Confidence 35899999977 999999999653 23445442 12333443333222 369999999753
Q ss_pred eecCCCceeeecCCCCCCCCCCCEEEEEEecc
Q psy7167 753 VKFNDHLLPVCLPPPNYELAPGTRCTVIGWGK 784 (897)
Q Consensus 753 i~fs~~V~PICLP~~~~~~~~g~~c~vtGWG~ 784 (897)
- +.++-|-. ...+..|+.+.++|+..
T Consensus 136 ~-----~~~~~l~~-s~~~~~G~~V~aiG~P~ 161 (351)
T TIGR02038 136 N-----LPTIPVNL-DRPPHVGDVVLAIGNPY 161 (351)
T ss_pred C-----CceEeccC-cCccCCCCEEEEEeCCC
Confidence 1 23333422 23567899999999864
No 52
>PRK10898 serine endoprotease; Provisional
Probab=96.82 E-value=0.034 Score=63.29 Aligned_cols=83 Identities=23% Similarity=0.314 Sum_probs=51.3
Q ss_pred EEeeEEEEeCC-eEEeecceeccCCCCcccceEEEeeeeeccCccccceEEEEEEEeeCCCCCCCCCCCCceEEEEeccc
Q psy7167 674 FYCAGVLISDQ-WVLTAAHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQK 752 (897)
Q Consensus 674 ~~CgGTLIs~~-wVLTAAHC~~~~~~~~~~~~~V~lG~~~~~~~~~~~~~~~V~~IiiHP~Y~~~~t~~nDIALLkL~~p 752 (897)
..-+|.+|+++ +|||++|=+.+. ..+.|.+.. +..+..+-+..+| ..||||||++..
T Consensus 78 ~~GSGfvi~~~G~IlTn~HVv~~a-----~~i~V~~~d---------g~~~~a~vv~~d~--------~~DlAvl~v~~~ 135 (353)
T PRK10898 78 TLGSGVIMDQRGYILTNKHVINDA-----DQIIVALQD---------GRVFEALLVGSDS--------LTDLAVLKINAT 135 (353)
T ss_pred ceeeEEEEeCCeEEEecccEeCCC-----CEEEEEeCC---------CCEEEEEEEEEcC--------CCCEEEEEEcCC
Confidence 46899999976 999999998653 344555431 2233333233322 369999999753
Q ss_pred eecCCCceeeecCCCCCCCCCCCEEEEEEecc
Q psy7167 753 VKFNDHLLPVCLPPPNYELAPGTRCTVIGWGK 784 (897)
Q Consensus 753 i~fs~~V~PICLP~~~~~~~~g~~c~vtGWG~ 784 (897)
.+.++-|.. ...+..|..+.++|+..
T Consensus 136 -----~l~~~~l~~-~~~~~~G~~V~aiG~P~ 161 (353)
T PRK10898 136 -----NLPVIPINP-KRVPHIGDVVLAIGNPY 161 (353)
T ss_pred -----CCCeeeccC-cCcCCCCCEEEEEeCCC
Confidence 123333432 22456788988888753
No 53
>PRK10139 serine endoprotease; Provisional
Probab=96.53 E-value=0.12 Score=60.86 Aligned_cols=142 Identities=23% Similarity=0.275 Sum_probs=79.0
Q ss_pred EEeeEEEEeC--CeEEeecceeccCCCCcccceEEEeeeeeccCccccceEEEEEEEeeCCCCCCCCCCCCceEEEEecc
Q psy7167 674 FYCAGVLISD--QWVLTAAHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQ 751 (897)
Q Consensus 674 ~~CgGTLIs~--~wVLTAAHC~~~~~~~~~~~~~V~lG~~~~~~~~~~~~~~~V~~IiiHP~Y~~~~t~~nDIALLkL~~ 751 (897)
..-+|.+|++ -+|||.+|-+.+. ..+.|.+.. +..+..+-+...+ ..||||||++.
T Consensus 90 ~~GSG~ii~~~~g~IlTn~HVv~~a-----~~i~V~~~d---------g~~~~a~vvg~D~--------~~DlAvlkv~~ 147 (455)
T PRK10139 90 GLGSGVIIDAAKGYVLTNNHVINQA-----QKISIQLND---------GREFDAKLIGSDD--------QSDIALLQIQN 147 (455)
T ss_pred ceEEEEEEECCCCEEEeChHHhCCC-----CEEEEEECC---------CCEEEEEEEEEcC--------CCCEEEEEecC
Confidence 4689999974 6999999999654 345666531 2334443333322 36999999975
Q ss_pred ceecCCCceeeecCCCCCCCCCCCEEEEEEecccCCCCCccccccceEEEEeeeChhHHHhhcCCCCCCccCCeEEeecC
Q psy7167 752 KVKFNDHLLPVCLPPPNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVCAGYP 831 (897)
Q Consensus 752 pi~fs~~V~PICLP~~~~~~~~g~~c~vtGWG~t~~~~~~~~s~~L~~~~v~vis~~~C~~~~~~~~~~it~~~iCAg~~ 831 (897)
+- .+.++.|... ..+..|+.+.++|+-.... .. +..-+++... +...... . ....|=+
T Consensus 148 ~~----~l~~~~lg~s-~~~~~G~~V~aiG~P~g~~-------~t---vt~GivS~~~-r~~~~~~--~-~~~~iqt--- 205 (455)
T PRK10139 148 PS----KLTQIAIADS-DKLRVGDFAVAVGNPFGLG-------QT---ATSGIISALG-RSGLNLE--G-LENFIQT--- 205 (455)
T ss_pred CC----CCceeEecCc-cccCCCCEEEEEecCCCCC-------Cc---eEEEEEcccc-ccccCCC--C-cceEEEE---
Confidence 42 3445666433 3467799998888743111 11 1222332110 0000000 0 0112222
Q ss_pred CCCcCCCCCCCCCceEEEecCCCCcEEEEEEEecCC
Q psy7167 832 EGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGI 867 (897)
Q Consensus 832 ~~~~d~C~GDSGGPLvc~~~~~~~~w~LvGIvS~G~ 867 (897)
....-.|.|||||+-... .|+||.+...
T Consensus 206 --da~in~GnSGGpl~n~~G------~vIGi~~~~~ 233 (455)
T PRK10139 206 --DASINRGNSGGALLNLNG------ELIGINTAIL 233 (455)
T ss_pred --CCccCCCCCcceEECCCC------eEEEEEEEEE
Confidence 234567999999995432 5999998743
No 54
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=96.38 E-value=0.011 Score=55.20 Aligned_cols=21 Identities=43% Similarity=0.675 Sum_probs=19.2
Q ss_pred eeEEEEeCC-eEEeecceeccC
Q psy7167 676 CAGVLISDQ-WVLTAAHCVGNL 696 (897)
Q Consensus 676 CgGTLIs~~-wVLTAAHC~~~~ 696 (897)
|+|.+|.++ +|||||||+...
T Consensus 1 GTGf~i~~~g~ilT~~Hvv~~~ 22 (120)
T PF13365_consen 1 GTGFLIGPDGYILTAAHVVEDW 22 (120)
T ss_dssp EEEEEEETTTEEEEEHHHHTCC
T ss_pred CEEEEEcCCceEEEchhheecc
Confidence 689999999 999999999764
No 55
>cd07459 CRD_TK_ROR_like Cysteine-rich domain of tyrosine kinase-like orphan receptors. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor (Ror) proteins, a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands. In addition, a number of Wnt-independent functions have been proposed for both Ror1 and Ror2.
Probab=96.26 E-value=0.002 Score=63.16 Aligned_cols=111 Identities=15% Similarity=0.199 Sum_probs=66.8
Q ss_pred CcceEeccCcccCCCCCCccccCCCCCCCCCHHHHHHhHHhhhhh---hccccchhhhhccccccCCCCCCC---Ccccc
Q psy7167 317 GKCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAI---IDVRCYELASLFLCAAMVPPCSSQ---GFFLR 390 (897)
Q Consensus 317 ~~C~pi~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~~~~L---v~~~C~~~l~~FlCs~~~P~C~~~---~~~i~ 390 (897)
+.|++-.-..|... |+-....+.......++++....+-.|... +...|.+++..+||..++|.|.+. ..+.+
T Consensus 1 G~C~~Y~G~vC~~~-L~~~~Vyv~~~~~q~~~e~~l~~~~~~i~~~~~ls~~C~~~a~~~lC~~~FP~C~~~~~~~~p~~ 79 (135)
T cd07459 1 GYCQPYRGSVCAKY-LGNKSVYVTSKQTQEDIEEQLSAAFTVISTSSDVSPKCQQYALPSLCYYAFPLCDEGSSTPKPRR 79 (135)
T ss_pred CcCccccchhhHHh-cCCCeEEEeCCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhhCCCCCCCCCCCCCCc
Confidence 45777777888864 663333334444444433222222223333 455999999999999999999652 23455
Q ss_pred CCccccccccc-ccccc---ccccCCC--CCCCCCCCCCCCCCC
Q psy7167 391 PCRSLCQETKR-RCGFF---FDVFGLP--LPSMENCNLYPDDMK 428 (897)
Q Consensus 391 PCrslCe~~~~-~C~~~---l~~~g~~--wP~~l~Cd~fPd~~~ 428 (897)
-||+-|+.++. .|... ++...+- --..-+|+.+|....
T Consensus 80 iCre~C~~l~~~~C~~E~~~~~~~~~~g~~~~lp~C~~LP~~~~ 123 (135)
T cd07459 80 ICRDECELLENDLCKKEYAIAKRHPLIGHQLLLPDCSSLPSPGS 123 (135)
T ss_pred ccHHHHHHHHHhHhHHHHHHHHhCcccCCccCCCCccCCCCCCC
Confidence 69999999997 99542 2222111 111347888886543
No 56
>PRK10942 serine endoprotease; Provisional
Probab=95.91 E-value=0.33 Score=57.54 Aligned_cols=83 Identities=30% Similarity=0.391 Sum_probs=52.1
Q ss_pred EEeeEEEEeC--CeEEeecceeccCCCCcccceEEEeeeeeccCccccceEEEEEEEeeCCCCCCCCCCCCceEEEEecc
Q psy7167 674 FYCAGVLISD--QWVLTAAHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQ 751 (897)
Q Consensus 674 ~~CgGTLIs~--~wVLTAAHC~~~~~~~~~~~~~V~lG~~~~~~~~~~~~~~~V~~IiiHP~Y~~~~t~~nDIALLkL~~ 751 (897)
...+|.+|+. -+|||.+|.+.+. ..+.|.+.. +..+..+-+..++ ..||||||++.
T Consensus 111 ~~GSG~ii~~~~G~IlTn~HVv~~a-----~~i~V~~~d---------g~~~~a~vv~~D~--------~~DlAvlki~~ 168 (473)
T PRK10942 111 ALGSGVIIDADKGYVVTNNHVVDNA-----TKIKVQLSD---------GRKFDAKVVGKDP--------RSDIALIQLQN 168 (473)
T ss_pred ceEEEEEEECCCCEEEeChhhcCCC-----CEEEEEECC---------CCEEEEEEEEecC--------CCCEEEEEecC
Confidence 3689999985 5999999998653 345565531 2233443333322 36999999974
Q ss_pred ceecCCCceeeecCCCCCCCCCCCEEEEEEec
Q psy7167 752 KVKFNDHLLPVCLPPPNYELAPGTRCTVIGWG 783 (897)
Q Consensus 752 pi~fs~~V~PICLP~~~~~~~~g~~c~vtGWG 783 (897)
+- .+.++-|-.. ..+..|+.++++|+-
T Consensus 169 ~~----~l~~~~lg~s-~~l~~G~~V~aiG~P 195 (473)
T PRK10942 169 PK----NLTAIKMADS-DALRVGDYTVAIGNP 195 (473)
T ss_pred CC----CCceeEecCc-cccCCCCEEEEEcCC
Confidence 32 2345555432 246778888888864
No 57
>PF02395 Peptidase_S6: Immunoglobulin A1 protease Serine protease Prosite pattern; InterPro: IPR000710 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S6 (clan PA(S)). The type sample being the IgA1-specific serine endopeptidase from Neisseria gonorrhoeae []. These cleave prolyl bonds in the hinge regions of immunoglobulin A heavy chains. Similar specificity is shown by the unrelated family of M26 metalloendopeptidases.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3SZE_A 3H09_B 3SYJ_A 1WXR_A 3AK5_B.
Probab=93.92 E-value=0.63 Score=57.90 Aligned_cols=33 Identities=30% Similarity=0.586 Sum_probs=24.5
Q ss_pred CCCCCCCCceEEEecCCCCcEEEEEEEecCCCCC
Q psy7167 837 ACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCA 870 (897)
Q Consensus 837 ~C~GDSGGPLvc~~~~~~~~w~LvGIvS~G~~C~ 870 (897)
.=.||||+||+.-+.. ..+|+|+||++.+.+..
T Consensus 213 ~~~GDSGSPlF~YD~~-~kKWvl~Gv~~~~~~~~ 245 (769)
T PF02395_consen 213 GSPGDSGSPLFAYDKE-KKKWVLVGVLSGGNGYN 245 (769)
T ss_dssp --TT-TT-EEEEEETT-TTEEEEEEEEEEECCCC
T ss_pred cccCcCCCceEEEEcc-CCeEEEEEEEccccccC
Confidence 5579999999998863 58999999999887654
No 58
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=93.16 E-value=0.067 Score=54.44 Aligned_cols=48 Identities=27% Similarity=0.418 Sum_probs=39.5
Q ss_pred ccccchhhhhhhcccCCCCC-ceEeCCC----ceecCccccCCCCC---CCCCCcc
Q psy7167 435 VGHKQVQEEKIRAMNKICLE-GFQCDVN----RCIPLDWQCDGHID---CQDQTDE 482 (897)
Q Consensus 435 ig~~ec~~~~~~~~~~~c~~-~f~C~~~----~Ci~~~~~CDG~~D---C~dgsDE 482 (897)
++..+|.+++++.....|.+ .|.|.+. .-||..++=||+-| |=|||||
T Consensus 55 DdyCDC~DGSDEPGTsAC~~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CCDGSDE 110 (176)
T PF12999_consen 55 DDYCDCPDGSDEPGTSACSNGKFYCENKGHIPRYIPSSRVNDGICDYDICCDGSDE 110 (176)
T ss_pred CcceeCCCCCCccccccCcCceEeeccCCCCCceeehhhhcCCcCcccccCCCCCC
Confidence 33445778888877777874 7999764 78999999999999 9999999
No 59
>smart00202 SR Scavenger receptor Cys-rich. The sea ucrhin egg peptide speract contains 4 repeats of SR domains that contain 6 conserved cysteines. May bind bacterial antigens in the protein MARCO.
Probab=92.95 E-value=0.074 Score=49.11 Aligned_cols=39 Identities=23% Similarity=0.555 Sum_probs=32.6
Q ss_pred ccceeeeecCCCCceeecccccCCCCCChhHHHhhcCCcccc
Q psy7167 533 AKGVLELYRPEHKTFHTSCITKYDPDNSPRAICARLGYTQVN 574 (897)
Q Consensus 533 ~~~~l~v~~~~~~~w~~vC~dgw~~~~sa~~iC~~lGy~~~~ 574 (897)
..|.|+|+. .+.|+.+|.++|+ ...+..+|++|||....
T Consensus 10 ~~G~leV~~--~~~Wg~VC~~~w~-~~~A~vvCrqlG~~~~~ 48 (101)
T smart00202 10 CEGRVEVYH--NGQWGTVCDDGWD-LRDANVVCRQLGFGGAL 48 (101)
T ss_pred CeEEEEEEE--CCEEeCeeCCCCC-hhHHHHHHHHcCCCCcc
Confidence 568899985 5699999999998 55789999999997644
No 60
>PF00530 SRCR: Scavenger receptor cysteine-rich domain; InterPro: IPR001190 The egg peptide speract receptor is a transmembrane glycoprotein []. Other members of this family include the macrophage scavenger receptor type I (a membrane glycoprotein implicated in the pathologic deposition of cholesterol in arterial walls during artherogenesis), an enteropeptidase and T-cell surface glycoprotein CD5 (may act as a receptor in regulating T-cell proliferation).; GO: 0005044 scavenger receptor activity, 0016020 membrane; PDB: 2XRC_D 2JP0_A 2JOP_A 2OYA_A 2OY3_A 1BY2_A 2OTT_Y 2JA4_A.
Probab=91.58 E-value=0.083 Score=48.09 Aligned_cols=39 Identities=23% Similarity=0.491 Sum_probs=30.9
Q ss_pred ccceeeeecCCCCceeecccccCCCCCChhHHHhhcCCccc
Q psy7167 533 AKGVLELYRPEHKTFHTSCITKYDPDNSPRAICARLGYTQV 573 (897)
Q Consensus 533 ~~~~l~v~~~~~~~w~~vC~dgw~~~~sa~~iC~~lGy~~~ 573 (897)
..|.|+++.. .+.|+.+|.++|+. ..+..+|++|||...
T Consensus 7 ~~G~vev~~~-~~~W~~vC~~~w~~-~~a~vvCrqLG~~~~ 45 (99)
T PF00530_consen 7 CEGRVEVCFY-NGSWGTVCDDGWSM-NEANVVCRQLGYGGA 45 (99)
T ss_dssp TEEEEEEEEE-TTEEEEEBTTT-SH-HHHHHHHHHTTSSEE
T ss_pred eeEEEEEEEE-CCEEEeEECCCcch-hHHHHHhhhhhcccc
Confidence 5788999642 57999999999994 468999999999543
No 61
>PF09272 Hepsin-SRCR: Hepsin, SRCR; InterPro: IPR015352 This entry represents the extracellular domain of the serine protease hepsin. The domain is formed primarily by three elements of regular secondary structure: a 12-residue alpha helix, a twisted five-stranded antiparallel beta sheet, and a second, two-stranded, antiparallel sheet. The two beta-sheets lie at roughly right angles to each other, with the helix nestled between the two, adopting an SRCR fold. The exact function of this domain has not been identified, though it probably may serve to orient the protease domain or place it in the vicinity of its substrate []. ; GO: 0004252 serine-type endopeptidase activity, 0070008 serine-type exopeptidase activity; PDB: 3T2N_B 1Z8G_A 1P57_A 1O5E_L 1O5F_L.
Probab=91.17 E-value=0.081 Score=48.66 Aligned_cols=39 Identities=15% Similarity=0.407 Sum_probs=28.6
Q ss_pred ccceeeeecCCCCceeecccccCCCCCChhHHHhhcCCcc
Q psy7167 533 AKGVLELYRPEHKTFHTSCITKYDPDNSPRAICARLGYTQ 572 (897)
Q Consensus 533 ~~~~l~v~~~~~~~w~~vC~dgw~~~~sa~~iC~~lGy~~ 572 (897)
++..|.||....++|+.+|++.-+ ...+...|++|||-.
T Consensus 10 aD~rL~vfD~te~~WRllCss~~N-~rvA~lsCeemGFlr 48 (110)
T PF09272_consen 10 ADQRLMVFDSTEGTWRLLCSSRSN-ARVAGLSCEEMGFLR 48 (110)
T ss_dssp TT-BEEEEETTTTEEEEEB--TTH-HHHHHHHHHHTT-S-
T ss_pred ccceEEEEeccCCEEEEEeecccc-hhhhcccchhcceEE
Confidence 456788999999999999999544 567888999999965
No 62
>KOG3509|consensus
Probab=88.69 E-value=0.37 Score=60.50 Aligned_cols=73 Identities=29% Similarity=0.665 Sum_probs=64.5
Q ss_pred CCCceEeCCCceecCccccCCCCCCCCCCccCCCCC------CCCCCcccCCC-ceeccceecCCCCCCCCCCCcccccc
Q psy7167 452 CLEGFQCDVNRCIPLDWQCDGHIDCQDQTDELNCEP------CKADEIHCGLN-KCISDYHVCDGKVDCPWGQDERNCLQ 524 (897)
Q Consensus 452 c~~~f~C~~~~Ci~~~~~CDG~~DC~dgsDE~~C~~------C~~~~f~C~~g-~Ci~~~~~CDg~~DC~dgsDE~~C~~ 524 (897)
-+++|.|.+++|.-..+.||+..+|.+++++.+|.. |....+.|.+. +|......|||..||.++++|..|..
T Consensus 33 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 112 (964)
T KOG3509|consen 33 SPNEFKCNNPRCVQPEALLDADSTCGPNSTPSGCNAKPSASDCKPTETQCRDRLRCNPQSFQCDGTNDCKDGSDEVGCKS 112 (964)
T ss_pred CcchhccCCccccCchhhhccccccCCCCCcCCccccccccccCCcccccccchhcCCccccccCCCCCCccchhccccc
Confidence 357899999999999999999999999999988852 77778899877 89999999999999999999987643
No 63
>cd07468 CRD_TK_ROR2 Cysteine-rich domain of tyrosine kinase-like orphan receptor 2. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor (Ror2), a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands. In addition, a number of Wnt-independent functions have been proposed for both Ror1 and Ror2.
Probab=86.05 E-value=0.3 Score=47.97 Aligned_cols=84 Identities=20% Similarity=0.411 Sum_probs=50.7
Q ss_pred CCcceEeccCcccCCCCCCccccCCCCCCCCCHHHHHHhHHh---hhhh---hccccchhhhhccccccCCCCCCCCcc-
Q psy7167 316 KGKCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEA---YEAI---IDVRCYELASLFLCAAMVPPCSSQGFF- 388 (897)
Q Consensus 316 ~~~C~pi~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~~---~~~L---v~~~C~~~l~~FlCs~~~P~C~~~~~~- 388 (897)
.+-|++-.-..|... |. |.+.|=+.. ..|.+++.++.+ |..+ +...|.+.+..+||...+|.|.+.+..
T Consensus 2 ~G~C~~Y~G~vC~~y-L~-~~~V~v~~~--~~~~~ie~~l~aa~~~i~~s~~ls~~Cr~~A~~~LC~~~Fp~C~~~~~~p 77 (140)
T cd07468 2 DGFCQPYRGIACARF-IG-NRTIYVDSL--QMQGEIENRITAAFTMIGTSTHLSDQCSQFAIPSFCHFVFPLCDDRSRTP 77 (140)
T ss_pred CCcceeccChHHHHH-hC-CCeEEEecC--CchHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHcCCCCCCCCCCC
Confidence 356777777777751 22 332222211 245555555552 2222 233899999999999999999653322
Q ss_pred --ccCCccccccccc-cc
Q psy7167 389 --LRPCRSLCQETKR-RC 403 (897)
Q Consensus 389 --i~PCrslCe~~~~-~C 403 (897)
.+=||.-|+.++. .|
T Consensus 78 ~pr~iCreeC~~l~~~~C 95 (140)
T cd07468 78 KPRELCRDECEVLENDLC 95 (140)
T ss_pred CCcchHHHHHHHHHHHHh
Confidence 2229999988654 46
No 64
>cd07467 CRD_TK_ROR1 Cysteine-rich domain of tyrosine kinase-like orphan receptor 1. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor 1 (Ror1), a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands. In addition, a number of Wnt-independent functions have been proposed for both Ror1 and Ror2.
Probab=83.46 E-value=0.31 Score=47.95 Aligned_cols=84 Identities=23% Similarity=0.436 Sum_probs=52.0
Q ss_pred CCcceEeccCcccCCCCCCccccCCCCCCCCCHHHHHHhHH-hhhhh-----hccccchhhhhccccccCCCCCCCCc-c
Q psy7167 316 KGKCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLE-AYEAI-----IDVRCYELASLFLCAAMVPPCSSQGF-F 388 (897)
Q Consensus 316 ~~~C~pi~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~-~~~~L-----v~~~C~~~l~~FlCs~~~P~C~~~~~-~ 388 (897)
.+-|++-.-..|... |. |.+.|=|.. .+|.+.+..+. +|..+ +...|.+.+..+||...+|.|.+.+. +
T Consensus 2 ~GyC~~YrG~vC~~~-L~-~~~Vf~~~~--~~~~~~E~~l~aa~~~i~~s~~vs~~Cr~~A~~~LC~~~FP~C~~~~~~P 77 (142)
T cd07467 2 DGFCQPYRGIACARF-IG-NRTIYMESL--HMQGEIENQITAAFTMIGTSSHLSDKCSQFAIPSLCHYAFPYCDETSGMP 77 (142)
T ss_pred CCccccccchHHHHH-hC-CCeEEEeCC--CCHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhCCCCcccCCCC
Confidence 355777777777651 22 323333321 25555655555 33222 34499999999999999999975332 2
Q ss_pred --ccCCccccccccc-cc
Q psy7167 389 --LRPCRSLCQETKR-RC 403 (897)
Q Consensus 389 --i~PCrslCe~~~~-~C 403 (897)
.+=||.-|+.++. -|
T Consensus 78 ~pr~iCreeC~~le~~~C 95 (142)
T cd07467 78 KPRDLCRDECEILENVLC 95 (142)
T ss_pred CcchHHHHHHHHHHHHHh
Confidence 2229999988764 46
No 65
>cd07469 CRD_TK_ROR_related Cysteine-rich domain of proteins similar to tyrosine kinase-like orphan receptors. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor (Ror) proteins, a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands.
Probab=79.54 E-value=0.64 Score=46.05 Aligned_cols=86 Identities=21% Similarity=0.392 Sum_probs=53.5
Q ss_pred CCcceEeccCcccCCCCCCccccCCCCCCCCCHHHHHHhHH--hhhhh---hccccchhhhhccccccCCCCCCCC-c--
Q psy7167 316 KGKCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLE--AYEAI---IDVRCYELASLFLCAAMVPPCSSQG-F-- 387 (897)
Q Consensus 316 ~~~C~pi~~~~C~~~~l~Yn~T~~PN~lgh~sq~ea~~~~~--~~~~L---v~~~C~~~l~~FlCs~~~P~C~~~~-~-- 387 (897)
.+.|++-.=..|... |.=+...|=|. ...++++++..+. .|..+ +...|.+.....||...+|.|.+.. .
T Consensus 2 ~GyC~~Y~G~iC~~y-L~~~~~V~~~~-s~~~~~~~~E~l~~~~~~e~~~~ls~~Cr~~A~~~LC~~aFP~C~~~~~~p~ 79 (147)
T cd07469 2 AGYCATYRGEVCRAY-LSNDALVWFNS-SYADPEGLNEQLTTGLWEELIKTVSELCRPAAEKLLCNYAFPECHPSGVGPT 79 (147)
T ss_pred CCccccccchHHHHH-hCCCcEEEEec-CCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 356777777778762 43332332222 2223333433333 46555 3449999999999999999996532 2
Q ss_pred cccCCcccccccccc-c
Q psy7167 388 FLRPCRSLCQETKRR-C 403 (897)
Q Consensus 388 ~i~PCrslCe~~~~~-C 403 (897)
+.+=||.-|+.++.. |
T Consensus 80 p~plCredC~a~~~~~C 96 (147)
T cd07469 80 PKPLCREDCLAVKELFC 96 (147)
T ss_pred cCchhHHHHHHHHHHHh
Confidence 223399999998765 6
No 66
>KOG2397|consensus
Probab=77.46 E-value=2.3 Score=49.48 Aligned_cols=47 Identities=26% Similarity=0.396 Sum_probs=38.8
Q ss_pred chhhhhhhcccCCCCC-ceEeCCC----ceecCccccCCCCCCCCCCccCCC
Q psy7167 439 QVQEEKIRAMNKICLE-GFQCDVN----RCIPLDWQCDGHIDCQDQTDELNC 485 (897)
Q Consensus 439 ec~~~~~~~~~~~c~~-~f~C~~~----~Ci~~~~~CDG~~DC~dgsDE~~C 485 (897)
+|.++.++....-|++ .|+|.+. .-|+.+.+=||+-||-||+||..=
T Consensus 65 DC~DGsDEPGtsACpngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~~S 116 (480)
T KOG2397|consen 65 DCLDGSDEPGTSACPNGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEYLS 116 (480)
T ss_pred cCCCCCCCCccccCCCCceeeeecCCCceeeechhccCcccccccCCCCccC
Confidence 4677777777778875 5999763 689999999999999999999764
No 67
>PF00548 Peptidase_C3: 3C cysteine protease (picornain 3C); InterPro: IPR000199 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This signature defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies C3A and C3B. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral C3 cysteine protease. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3SJO_E 2H6M_A 1QA7_C 1HAV_B 2HAL_A 2H9H_A 3QZQ_B 3QZR_A 3R0F_B 3SJ9_A ....
Probab=72.14 E-value=13 Score=37.94 Aligned_cols=150 Identities=22% Similarity=0.208 Sum_probs=72.4
Q ss_pred CceEEeeEEEEeCCeEEeecceeccCCCCcccceEEEeeeeeccCccccceEEEEEEEeeCCCCCCCCCCCCceEEEEec
Q psy7167 671 EFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLK 750 (897)
Q Consensus 671 ~~~~~CgGTLIs~~wVLTAAHC~~~~~~~~~~~~~V~lG~~~~~~~~~~~~~~~V~~IiiHP~Y~~~~t~~nDIALLkL~ 750 (897)
...+.+.|..|.++|+|--.|-- ...++.++ +..+.+.+.+..-.- .....||+|++|.
T Consensus 22 ~g~~t~l~~gi~~~~~lvp~H~~--------~~~~i~i~----------g~~~~~~d~~~lv~~---~~~~~Dl~~v~l~ 80 (172)
T PF00548_consen 22 KGEFTMLALGIYDRYFLVPTHEE--------PEDTIYID----------GVEYKVDDSVVLVDR---DGVDTDLTLVKLP 80 (172)
T ss_dssp TEEEEEEEEEEEBTEEEEEGGGG--------GCSEEEET----------TEEEEEEEEEEEEET---TSSEEEEEEEEEE
T ss_pred CceEEEecceEeeeEEEEECcCC--------CcEEEEEC----------CEEEEeeeeEEEecC---CCcceeEEEEEcc
Confidence 45677888999999999999921 11233333 222333332221111 1224699999998
Q ss_pred cceecCCCceeeecCCCCCCCCCCCEEEEEEecccCCCCCccccccceEEEEeeeChhHHHhhcCCCCCCccCCeEEeec
Q psy7167 751 QKVKFNDHLLPVCLPPPNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVCAGY 830 (897)
Q Consensus 751 ~pi~fs~~V~PICLP~~~~~~~~g~~c~vtGWG~t~~~~~~~~s~~L~~~~v~vis~~~C~~~~~~~~~~it~~~iCAg~ 830 (897)
..-.|.+-.+-+. ..+.....+.++-|-.... ..... +.-+.....-. ... ..... +..|
T Consensus 81 ~~~kfrDIrk~~~-----~~~~~~~~~~l~v~~~~~~-------~~~~~--v~~v~~~~~i~-~~g---~~~~~--~~~Y 140 (172)
T PF00548_consen 81 RNPKFRDIRKFFP-----ESIPEYPECVLLVNSTKFP-------RMIVE--VGFVTNFGFIN-LSG---TTTPR--SLKY 140 (172)
T ss_dssp SSS-B--GGGGSB-----SSGGTEEEEEEEEESSSST-------CEEEE--EEEEEEEEEEE-ETT---EEEEE--EEEE
T ss_pred CCcccCchhhhhc-----cccccCCCcEEEEECCCCc-------cEEEE--EEEEeecCccc-cCC---CEeeE--EEEE
Confidence 8777765555444 1222334555555532111 11111 10000000000 000 01111 1222
Q ss_pred CCCCcCCCCCCCCCceEEEecCCCCcEEEEEEEecCC
Q psy7167 831 PEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGI 867 (897)
Q Consensus 831 ~~~~~d~C~GDSGGPLvc~~~~~~~~w~LvGIvS~G~ 867 (897)
...+-.|+=||||+.... +...++||..-|.
T Consensus 141 ---~~~t~~G~CG~~l~~~~~---~~~~i~GiHvaG~ 171 (172)
T PF00548_consen 141 ---KAPTKPGMCGSPLVSRIG---GQGKIIGIHVAGN 171 (172)
T ss_dssp ---ESEEETTGTTEEEEESCG---GTTEEEEEEEEEE
T ss_pred ---ccCCCCCccCCeEEEeec---cCccEEEEEeccC
Confidence 123446899999998654 4567999988664
No 68
>PF00863 Peptidase_C4: Peptidase family C4 This family belongs to family C4 of the peptidase classification.; InterPro: IPR001730 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. Nuclear inclusion A (NIA) proteases from potyviruses are cysteine peptidases belong to the MEROPS peptidase family C4 (NIa protease family, clan PA(C)) [, ]. Potyviruses include plant viruses in which the single-stranded RNA encodes a polyprotein with NIA protease activity, where proteolytic cleavage is specific for Gln+Gly sites. The NIA protease acts on the polyprotein, releasing itself by Gln+Gly cleavage at both the N- and C-termini. It further processes the polyprotein by cleavage at five similar sites in the C-terminal half of the sequence. In addition to its C-terminal protease activity, the NIA protease contains an N-terminal domain that has been implicated in the transcription process []. This peptidase is present in the nuclear inclusion protein of potyviruses.; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MMG_B 1Q31_B 1LVB_A 1LVM_A.
Probab=70.19 E-value=34 Score=36.91 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=65.9
Q ss_pred EEeCCeEEeecceeccCCCCcccceEEEe--eeeeccCccccceEEEEEEEeeCCCCCCCCCCCCceEEEEeccceecCC
Q psy7167 680 LISDQWVLTAAHCVGNLTGLNIDEWTVQL--GVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFND 757 (897)
Q Consensus 680 LIs~~wVLTAAHC~~~~~~~~~~~~~V~l--G~~~~~~~~~~~~~~~V~~IiiHP~Y~~~~t~~nDIALLkL~~pi~fs~ 757 (897)
|.--.||||-+|-|..... .++|.. |.+.... .. ++-+||-. ..||.||+|.+.++ .
T Consensus 37 igyG~~iItn~HLf~~nng----~L~i~s~hG~f~v~n----t~-----~lkv~~i~------~~DiviirmPkDfp--P 95 (235)
T PF00863_consen 37 IGYGSYIITNAHLFKRNNG----ELTIKSQHGEFTVPN----TT-----QLKVHPIE------GRDIVIIRMPKDFP--P 95 (235)
T ss_dssp EEETTEEEEEGGGGSSTTC----EEEEEETTEEEEECE----GG-----GSEEEE-T------CSSEEEEE--TTS----
T ss_pred EeECCEEEEChhhhccCCC----eEEEEeCceEEEcCC----cc-----ccceEEeC------CccEEEEeCCcccC--C
Confidence 4567899999999865432 233332 2222111 11 22233332 35999999987654 2
Q ss_pred CceeeecCCCCCCCCCCCEEEEEEecccCCCCCccccccceEEEEeeeChhHHHhhcCCCCCCccCCeEEeecCCCCcCC
Q psy7167 758 HLLPVCLPPPNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVCAGYPEGGKDA 837 (897)
Q Consensus 758 ~V~PICLP~~~~~~~~g~~c~vtGWG~t~~~~~~~~s~~L~~~~v~vis~~~C~~~~~~~~~~it~~~iCAg~~~~~~d~ 837 (897)
+-+-+++- .+..+..+.++|--...... .....+.. .+.. +-... +-.. ..++
T Consensus 96 f~~kl~FR----~P~~~e~v~mVg~~fq~k~~----~s~vSesS--~i~p-~~~~~-------fWkH---------wIsT 148 (235)
T PF00863_consen 96 FPQKLKFR----APKEGERVCMVGSNFQEKSI----SSTVSESS--WIYP-EENSH-------FWKH---------WIST 148 (235)
T ss_dssp --S---B--------TT-EEEEEEEECSSCCC----EEEEEEEE--EEEE-ETTTT-------EEEE----------C--
T ss_pred cchhhhcc----CCCCCCEEEEEEEEEEcCCe----eEEECCce--EEee-cCCCC-------eeEE---------EecC
Confidence 22222221 23456677777876544321 11111111 1111 00000 0000 1233
Q ss_pred CCCCCCCceEEEecCCCCcEEEEEEEecCCCCCCCCCCcEEEecch-hHHHH
Q psy7167 838 CQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPK-YVTWI 888 (897)
Q Consensus 838 C~GDSGGPLvc~~~~~~~~w~LvGIvS~G~~C~~~~~PgVYT~Vs~-y~dWI 888 (897)
=.||=|.|||...++ .+|||.|-+..-.. -.+|+-+.. |.+-+
T Consensus 149 k~G~CG~PlVs~~Dg-----~IVGiHsl~~~~~~---~N~F~~f~~~f~~~~ 192 (235)
T PF00863_consen 149 KDGDCGLPLVSTKDG-----KIVGIHSLTSNTSS---RNYFTPFPDDFEEFY 192 (235)
T ss_dssp -TT-TT-EEEETTT-------EEEEEEEEETTTS---SEEEEE--TTHHHHH
T ss_pred CCCccCCcEEEcCCC-----cEEEEEcCccCCCC---eEEEEcCCHHHHHHH
Confidence 357889999987642 59999997754332 347887754 44433
No 69
>KOG3509|consensus
Probab=50.62 E-value=8.1 Score=49.05 Aligned_cols=63 Identities=24% Similarity=0.610 Sum_probs=56.4
Q ss_pred ceecCccccCCCCCCCCCCccCCCC----CCCCCCcccCCCceeccceecCCCCCCCCCCCcccccc
Q psy7167 462 RCIPLDWQCDGHIDCQDQTDELNCE----PCKADEIHCGLNKCISDYHVCDGKVDCPWGQDERNCLQ 524 (897)
Q Consensus 462 ~Ci~~~~~CDG~~DC~dgsDE~~C~----~C~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~C~~ 524 (897)
.|.-....||+..||.+.+|+.+++ .|...+|.|.+++|.-....||...+|..++++.+|..
T Consensus 2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (964)
T KOG3509|consen 2 ECVKNRYACDRQPDCRDRSDVANDPAIGSACSPNEFKCNNPRCVQPEALLDADSTCGPNSTPSGCNA 68 (964)
T ss_pred chhhhhhhhccchhhHhhcccCCCccccccCCcchhccCCccccCchhhhccccccCCCCCcCCccc
Confidence 4667788999999999999999986 38889999999999999999999999999998887754
No 70
>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A.
Probab=37.65 E-value=25 Score=34.13 Aligned_cols=34 Identities=35% Similarity=0.499 Sum_probs=25.9
Q ss_pred CCCCCCceEEEecCCCCcEEEEEEEecCCCCCCCCCCcEEEecchh
Q psy7167 839 QGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKY 884 (897)
Q Consensus 839 ~GDSGGPLvc~~~~~~~~w~LvGIvS~G~~C~~~~~PgVYT~Vs~y 884 (897)
.||-||+|.|+.. ++||++-|-. .-.-|++|..+
T Consensus 89 PGdCGg~L~C~HG-------ViGi~Tagg~-----g~VaF~dir~~ 122 (127)
T PF00947_consen 89 PGDCGGILRCKHG-------VIGIVTAGGE-----GHVAFADIRDL 122 (127)
T ss_dssp TT-TCSEEEETTC-------EEEEEEEEET-----TEEEEEECCCG
T ss_pred CCCCCceeEeCCC-------eEEEEEeCCC-----ceEEEEechhh
Confidence 6899999999874 9999998732 23578998875
No 71
>PF12929 Mid1: Stretch-activated Ca2+-permeable channel component; InterPro: IPR024338 Mid1 is a yeast plasma membrane protein required for Ca2+ influx induced by the mating pheromone alpha-factor during the mating process [, , ]. The protein is composed of 548-amino-acid residues, contains four hydrophobic regions (H1, H2, H3 and H4) and two cysteine-rich regions (C1 and C2) at the C terminus. H1 appears to be a signal sequence necessary for the alpha-factor-induced delivery to the plasma membrane. The region from H1 to H3 is required for the localisation of Mid1 in the plasma and ER membranes. C1 and C2 are thought to be involved in oligomerisation via the formation of disulphide bonds. Trafficking of Mid1-GFP to the plasma membrane is dependent on the N-glycosylation of Mid1 and the transporter protein Sec12. This suggests that the trafficking of Mid1-GFP to the plasma membrane requires a Sec12-dependent pathway from the ER to the Golgi, and that Mid1 is recruited via a Sec6- and Sec7-independent pathway from the Golgi to the plasma membrane.
Probab=36.47 E-value=27 Score=40.92 Aligned_cols=90 Identities=22% Similarity=0.525 Sum_probs=57.1
Q ss_pred CCcceEec-cCcccCCCCCCccccCCCCCCCCCHHH------HHHhHHhh-hhhhcc-----------------ccchhh
Q psy7167 316 KGKCVLLE-VKFCLDHKVPYNYTLFPNYLGDFSQSD------AQTDLEAY-EAIIDV-----------------RCYELA 370 (897)
Q Consensus 316 ~~~C~pi~-~~~C~~~~l~Yn~T~~PN~lgh~sq~e------a~~~~~~~-~~Lv~~-----------------~C~~~l 370 (897)
..-|.=|- ++||-. +.|..=.=|++..-.+... |.....-| ..|-.+ .|-..=
T Consensus 230 ~~nC~Lv~dL~FC~~--VAYaVP~np~~~~n~t~L~~~YD~~A~~~Y~NFs~sL~qi~C~t~~~~~YSl~r~C~DC~~aY 307 (427)
T PF12929_consen 230 DDNCQLVYDLDFCSE--VAYAVPSNPSFFYNKTELAKFYDDYAKSLYANFSKSLQQIPCNTDSEARYSLARTCDDCARAY 307 (427)
T ss_pred CCCeeeecCCCCCCC--cceecccCcccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCCCchHHHHHH
Confidence 45697774 999987 8887766666642222111 11112222 222222 455556
Q ss_pred hhccccccCCCCCCC--C----------------------------------------------ccccCCcccccccccc
Q psy7167 371 SLFLCAAMVPPCSSQ--G----------------------------------------------FFLRPCRSLCQETKRR 402 (897)
Q Consensus 371 ~~FlCs~~~P~C~~~--~----------------------------------------------~~i~PCrslCe~~~~~ 402 (897)
+.-||++-.|+|.+. . ..++||..+|..+.+.
T Consensus 308 k~WLCaVtIPRC~d~~~~~~~~~~r~~~~~~~ng~~~~~~~~~~~~~~~sRN~~Id~~i~PgpY~EiLPC~dlCy~vVrs 387 (427)
T PF12929_consen 308 KNWLCAVTIPRCTDFSSTSPYLQPRNAGQPFPNGTSLPATLRNSRASNSSRNPFIDEVIKPGPYKEILPCIDLCYAVVRS 387 (427)
T ss_pred hhcccEeecccccCCCCCCcccccccccCCCcCCcccccccccccccCCCCCcccccccCCCCcceeccHHHHHHHHHhc
Confidence 789999999999531 1 1256899999999999
Q ss_pred ccccc
Q psy7167 403 CGFFF 407 (897)
Q Consensus 403 C~~~l 407 (897)
|=+.|
T Consensus 388 CP~~l 392 (427)
T PF12929_consen 388 CPADL 392 (427)
T ss_pred Cchhh
Confidence 98765
No 72
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=28.71 E-value=8.8e+02 Score=27.29 Aligned_cols=168 Identities=21% Similarity=0.186 Sum_probs=79.2
Q ss_pred EEeeEEEEe-CCeEEeecceeccCCCCcccceEEEeeeeeccCccccceEEEEEEEeeCCCCCCCCCCCCceEEEEeccc
Q psy7167 674 FYCAGVLIS-DQWVLTAAHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQK 752 (897)
Q Consensus 674 ~~CgGTLIs-~~wVLTAAHC~~~~~~~~~~~~~V~lG~~~~~~~~~~~~~~~V~~IiiHP~Y~~~~t~~nDIALLkL~~p 752 (897)
...+|.+++ ..+|||..|=+... ....|.+ ..+..+..+-+-. + ...|||+||.+..
T Consensus 72 ~~gSg~i~~~~g~ivTn~hVi~~a-----~~i~v~l---------~dg~~~~a~~vg~----d----~~~dlavlki~~~ 129 (347)
T COG0265 72 GLGSGFIISSDGYIVTNNHVIAGA-----EEITVTL---------ADGREVPAKLVGK----D----PISDLAVLKIDGA 129 (347)
T ss_pred ccccEEEEcCCeEEEecceecCCc-----ceEEEEe---------CCCCEEEEEEEec----C----CccCEEEEEeccC
Confidence 356777777 77888888877542 3344444 1233344444332 1 2369999999864
Q ss_pred eecCCCceeeecCCCCCCCCCCCEEEEEEecccCCCCCccccccceEEEEeeeChhHHHhhcCCCCCCccCCeEEeecCC
Q psy7167 753 VKFNDHLLPVCLPPPNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVCAGYPE 832 (897)
Q Consensus 753 i~fs~~V~PICLP~~~~~~~~g~~c~vtGWG~t~~~~~~~~s~~L~~~~v~vis~~~C~~~~~~~~~~it~~~iCAg~~~ 832 (897)
-. +..+-+-. ...+..++.....|-...-. ...-..-+..+.+. +-..... ....| .
T Consensus 130 ~~----~~~~~~~~-s~~l~vg~~v~aiGnp~g~~-------~tvt~Givs~~~r~-~v~~~~~-----~~~~I-----q 186 (347)
T COG0265 130 GG----LPVIALGD-SDKLRVGDVVVAIGNPFGLG-------QTVTSGIVSALGRT-GVGSAGG-----YVNFI-----Q 186 (347)
T ss_pred CC----CceeeccC-CCCcccCCEEEEecCCCCcc-------cceeccEEeccccc-cccCccc-----ccchh-----h
Confidence 32 22222221 22334566555555432200 11111112222221 1110000 01111 1
Q ss_pred CCcCCCCCCCCCceEEEecCCCCcEEEEEEEecCCCCCCCCCCcEEEecchhHHHHHHHH
Q psy7167 833 GGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYVTWIQDIM 892 (897)
Q Consensus 833 ~~~d~C~GDSGGPLvc~~~~~~~~w~LvGIvS~G~~C~~~~~PgVYT~Vs~y~dWI~~~i 892 (897)
......+|.|||||+-... .++||.+..........---|+=-..+..++...+
T Consensus 187 tdAain~gnsGgpl~n~~g------~~iGint~~~~~~~~~~gigfaiP~~~~~~v~~~l 240 (347)
T COG0265 187 TDAAINPGNSGGPLVNIDG------EVVGINTAIIAPSGGSSGIGFAIPVNLVAPVLDEL 240 (347)
T ss_pred cccccCCCCCCCceEcCCC------cEEEEEEEEecCCCCcceeEEEecHHHHHHHHHHH
Confidence 1245788999999996442 58999887765433111012443344444544443
No 73
>PF06040 Adeno_E3: Adenovirus E3 protein; InterPro: IPR009266 This family consists of several Adenovirus E3 proteins. The E3 protein does not seem to be essential for virus replication in cultured cells suggesting that the protein may function in virus-host interactions [].
Probab=24.38 E-value=58 Score=30.92 Aligned_cols=51 Identities=25% Similarity=0.294 Sum_probs=38.5
Q ss_pred ccchhhhccccCCCCccccccCccccce---EEEehhHHHHHHHhcchhhhhcc
Q psy7167 216 MSLHHRIIRDIRKPSTHTIRGRPYKIQY---VQIVVNAIALFAIAGGIVSYFRA 266 (897)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~a~~~~ 266 (897)
..+|||.-|++-.+.....+.|.||.+- =+.+.+.++|.+++||+.|.|+.
T Consensus 52 ~~~~~R~~R~l~~tNtt~~tGGELr~~pte~p~evvG~l~LGvV~GG~i~vLcy 105 (127)
T PF06040_consen 52 TNLQHRHSRSLSDTNTTTKTGGELRGPPTESPWEVVGYLILGVVAGGLIAVLCY 105 (127)
T ss_pred hhhhhhhcccccccCCccccCceEeCCCCCCCeeeeehhhHHHHhccHHHHHHH
Confidence 4578888667666666667888888765 34556678999999999998877
Done!