RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7167
(897 letters)
>1z8g_A Serine protease hepsin; serine protease hepsin, protease,
hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A
{Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A
1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Length = 372
Score = 335 bits (860), Expect = e-107
Identities = 113/392 (28%), Positives = 167/392 (42%), Gaps = 39/392 (9%)
Query: 516 GQDERNCLQLSGMMGDVAKGVLELYRPEHKTFHTSCITKYDPDNSPRAICARLGYTQVNH 575
Q+ +Q+S A L ++ T+ C ++ + + C +G+ +
Sbjct: 2 DQEPLYPVQVSS-----ADARLMVFDKTEGTWRLLCSSRSNARVA-GLSCEEMGFLRALT 55
Query: 576 TELIREKPLTKMRHTGHQLDVSYNLPYSPYNDSMLKLKACNDDDDYPQLELTCTNIQCGT 635
+ + +G LP++ ++ + C L CG
Sbjct: 56 HSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRF-----LAAICQDCGR 110
Query: 636 RRHLHNNFKARKRIIGGFESNPGDWPFLAAL-LGGPEFVFYCAGVLISDQWVLTAAHCVG 694
R+ RI+GG +++ G WP+ +L G C G L+S WVLTAAHC
Sbjct: 111 RK------LPVDRIVGGRDTSLGRWPWQVSLRYDG---AHLCGGSLLSGDWVLTAAHCFP 161
Query: 695 NLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQ-----HDNDIALFQL 749
+ W V G + S G + V+ V H Y + NDIAL L
Sbjct: 162 ERN-RVLSRWRVFAGAVAQAS--PHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHL 218
Query: 750 KQKVKFNDHLLPVCLPPPNYELAPGTRCTVIGWGK-REDTRVSEYETAVNEVEVPIITRD 808
+ +++ PVCLP L G CTV GWG + + + + E VPII+ D
Sbjct: 219 SSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGV---LQEARVPIISND 275
Query: 809 ICNK--WLNNRELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFE-QWFVGGIVSW 865
+CN + N+ + M CAGYPEGG DACQGDSGGP +C S + +W + GIVSW
Sbjct: 276 VCNGADFYGNQ---IKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSW 332
Query: 866 GIKCAHPHLPGVYAYVPKYVTWIQDIMDKYSY 897
G CA PGVY V + WI + +S
Sbjct: 333 GTGCALAQKPGVYTKVSDFREWIFQAIKTHSE 364
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 339 bits (870), Expect = e-106
Identities = 109/443 (24%), Positives = 162/443 (36%), Gaps = 62/443 (13%)
Query: 455 GFQCDVNRCIPLDWQCDGHIDCQDQTDELNC-EPCKADEIHCGLNKCISDYHVCDGKVDC 513
G + + C + G+ D D + D C K IS CDG DC
Sbjct: 170 GLETSLAECTFTKRRTMGYQDFADVVCYTQKADSPMDDFFQCVNGKYISQMKACDGINDC 229
Query: 514 PWGQDERNCLQLSGMMGDVAKGVLELYRPEHKTFHTSCITKYDPDNSPRAICARLGYTQV 573
DE C G + + + S +
Sbjct: 230 GDQSDELCCKACQG----------KGFHCKSGVCIPSQYQCNGEVDCI------------ 267
Query: 574 NHTELIREKPLTKMRHTGHQLDVSYNLPYSPYNDSMLKLKACNDDDDYPQLELTCTNIQC 633
D ++ ++ + D + +++ + C
Sbjct: 268 ------------------TGEDEVGCAGFASVAQEETEILTADMDAERRRIKSLLPKLSC 309
Query: 634 GTRRHLHNNFKARKRIIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCV 693
G + +H RKRI+GG + GD P+ A+ C G+ I W+LTAAHC+
Sbjct: 310 GVKNRMH---IRRKRIVGGKRAQLGDLPWQVAIKDASGI--TCGGIYIGGCWILTAAHCL 364
Query: 694 GNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKV 753
V + V + H YN + NDIAL ++K+
Sbjct: 365 RASK--THRYQIWTTVVDWIHPDLKRIVIEYVDRIIFHENYN-AGTYQNDIALIEMKKDG 421
Query: 754 KFND----HLLPVCLPPPNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDI 809
D +P C+P Y P C V GWG+ +D +E ++ EV +I+
Sbjct: 422 NKKDCELPRSIPACVPWSPYLFQPNDTCIVSGWGREKD---NERVFSLQWGEVKLISN-- 476
Query: 810 CNKWLNNRELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKC 869
C+K+ NR M CAG +G DAC+GDSGGPL+C ++N +V G+VSWG C
Sbjct: 477 CSKFYGNRF--YEKEMECAGTYDGSIDACKGDSGGPLVCMDANN--VTYVWGVVSWGENC 532
Query: 870 AHPHLPGVYAYVPKYVTWIQDIM 892
P PGVY V Y WI +
Sbjct: 533 GKPEFPGVYTKVANYFDWISYHV 555
Score = 79.6 bits (196), Expect = 2e-15
Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 9/169 (5%)
Query: 392 CRSLC----QETKRRCGFFFDVFGLPLPSMENCNLYPDDMK---YPDVKCVGHKQVQEEK 444
C L +T+RR +C + + + +G++ +
Sbjct: 136 CLDLGFQQGADTQRRFKLSDLSINSTECLHVHCRGLETSLAECTFTKRRTMGYQDFADVV 195
Query: 445 IRAMNKIC--LEGFQCDVNRCIPLDWQCDGHIDCQDQTDELNCEPCKADEIHCGLNKCIS 502
+ FQC + I CDG DC DQ+DEL C+ C+ HC CI
Sbjct: 196 CYTQKADSPMDDFFQCVNGKYISQMKACDGINDCGDQSDELCCKACQGKGFHCKSGVCIP 255
Query: 503 DYHVCDGKVDCPWGQDERNCLQLSGMMGDVAKGVLELYRPEHKTFHTSC 551
+ C+G+VDC G+DE C + + + + + E + +
Sbjct: 256 SQYQCNGEVDCITGEDEVGCAGFASVAQEETEILTADMDAERRRIKSLL 304
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 242
Score = 313 bits (805), Expect = e-101
Identities = 91/253 (35%), Positives = 127/253 (50%), Gaps = 17/253 (6%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
I GG ++ PGD+P+ +LGG AG L+ D WVLTAAH V + +++
Sbjct: 1 IYGGQKAKPGDFPWQVLILGG----TTAAGALLYDNWVLTAAHAVYEQK-HDASALDIRM 55
Query: 709 GVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPN 768
G +R S T+ VF H Y A DNDIAL +L KV N ++ P+CLP
Sbjct: 56 GTLKRLSPH--YTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKE 113
Query: 769 --YELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNREL---NVTL 823
+ T GWG + ++ + V++PI+ C +VT
Sbjct: 114 AESFMRTDDIGTASGWGLTQRGFLARN---LMYVDIPIVDHQKCTAAYEKPPYPRGSVTA 170
Query: 824 GMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWG-IKCAHPHLPGVYAYVP 882
M+CAG GGKD+C+GDSGG L+ S E+WFVGGIVSWG + C GVY V
Sbjct: 171 NMLCAGLESGGKDSCRGDSGGALVFLDSET-ERWFVGGIVSWGSMNCGEAGQYGVYTKVI 229
Query: 883 KYVTWIQDIMDKY 895
Y+ WI++I+ +
Sbjct: 230 NYIPWIENIISDF 242
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 309 bits (793), Expect = 8e-99
Identities = 90/272 (33%), Positives = 130/272 (47%), Gaps = 20/272 (7%)
Query: 627 TCTNIQCGTRRHLHNNFKARKRIIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWV 686
+ CG R R RIIGG S PG P+LAA+ G +CAG L+ WV
Sbjct: 16 SPGRQACGRRHK--KRTFLRPRIIGGSSSLPGSHPWLAAIYIGD---SFCAGSLVHTCWV 70
Query: 687 LTAAHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIAL 746
++AAHC + D +V LG N F + ++ Y++ D+D+ L
Sbjct: 71 VSAAHCFSHSP--PRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVL 128
Query: 747 FQLK----QKVKFNDHLLPVCLPPPNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEV 802
+LK + + + P+CLP P G +C + GWG ++ VS Y +++ E V
Sbjct: 129 IRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDEN-VSGYSSSLREALV 187
Query: 803 PIITRDICNK--WLNNRELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVG 860
P++ C+ ++ M+CAGY + DACQGDSGGPL C + ++
Sbjct: 188 PLVADHKCSSPEVYGAD---ISPNMLCAGYFDCKSDACQGDSGGPLACEKN---GVAYLY 241
Query: 861 GIVSWGIKCAHPHLPGVYAYVPKYVTWIQDIM 892
GI+SWG C H PGVY V YV WI D +
Sbjct: 242 GIISWGDGCGRLHKPGVYTRVANYVDWINDRI 273
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 312 bits (800), Expect = 3e-98
Identities = 94/284 (33%), Positives = 132/284 (46%), Gaps = 22/284 (7%)
Query: 618 DDDYPQLELTCTNIQCGTRRHLHNNFKARKRIIGGFESNPGDWPFLAALLGGPEFVFYCA 677
+ L CG +I GG ++ PGD+P+ +LGG A
Sbjct: 136 TSSKGEKSLPVCEPVCGLSARTTGG-----QIYGGQKAKPGDFPWQVLILGG----TTAA 186
Query: 678 GVLISDQWVLTAAHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIG 737
G L+ D WVLTAAH V + +++G +R S T+ VF H Y
Sbjct: 187 GALLYDNWVLTAAHAVYE-QKHDASALDIRMGTLKRLSPH--YTQAWSEAVFIHEGYTHD 243
Query: 738 AQHDNDIALFQLKQKVKFNDHLLPVCLPPPN--YELAPGTRCTVIGWGKREDTRVSEYET 795
A DNDIAL +L KV N ++ P+CLP + T GWG + ++
Sbjct: 244 AGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARN-- 301
Query: 796 AVNEVEVPIITRDICNKWLNNR---ELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSH 852
+ V++PI+ C +VT M+CAG GGKD+C+GDSGG L+ S
Sbjct: 302 -LMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSE 360
Query: 853 NFEQWFVGGIVSWG-IKCAHPHLPGVYAYVPKYVTWIQDIMDKY 895
E+WFVGGIVSWG + C GVY V Y+ WI++I+ +
Sbjct: 361 T-ERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIISDF 403
>2jde_A Urokinase-type plasminogen activator; plasminogen activation,
EGF-like domain, blood coagulation, inhibitor complex,
UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Length = 276
Score = 306 bits (786), Expect = 7e-98
Identities = 84/285 (29%), Positives = 132/285 (46%), Gaps = 24/285 (8%)
Query: 622 PQLELTCTNIQCGTRRHLHNNFKARKRIIGGFESNPGDWPFLAALL---GGPEFVFYCAG 678
P QCG + + R +IIGG + + P+ AA+ G + C G
Sbjct: 2 PSSPPEELKFQCGQKT-----LRPRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGG 56
Query: 679 VLISDQWVLTAAHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIG- 737
L+S WV++A HC + +++ V LG +R NS +F+V + H Y+
Sbjct: 57 SLMSPCWVISATHCFIDYP--KKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADT 114
Query: 738 AQHDNDIALFQLK----QKVKFNDHLLPVCLPPPNYELAPGTRCTVIGWGKREDTRVSEY 793
H NDIAL +++ + + + + +CLP + GT C + G+GK T Y
Sbjct: 115 LAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENST-DYLY 173
Query: 794 ETAVNEVEVPIITRDICNK--WLNNRELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSS 851
+ V +I+ C + + + VT M+CA P+ D+CQGDSGGPL+C
Sbjct: 174 PEQLKMTVVKLISHRECQQPHYYGSE---VTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ 230
Query: 852 HNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYVTWIQDIMDKYS 896
+ + GIVSWG CA PGVY V ++ WI+ + +
Sbjct: 231 ---GRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKEEN 272
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase;
1.90A {Homo sapiens} PDB: 1ekb_B
Length = 235
Score = 303 bits (779), Expect = 2e-97
Identities = 85/247 (34%), Positives = 136/247 (55%), Gaps = 16/247 (6%)
Query: 649 IIGGFESNPGDWPFLAAL-LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQ 707
I+GG ++ G WP++ L C L+S W+++AAHCV L +WT
Sbjct: 1 IVGGSDAKEGAWPWVVGLYYDD---RLLCGASLVSSDWLVSAAHCVYGRN-LEPSKWTAI 56
Query: 708 LGVTRRNSYAFFGT-RFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPP 766
LG+ +++ T + + + YN + DNDIA+ L+ KV + D++ P+ LP
Sbjct: 57 LGLHMKSNLTSPQTVPRLIDEIVINPHYN-RRRKDNDIAMMHLEFKVNYTDYIQPISLPE 115
Query: 767 PNYELAPGTRCTVIGWGK-REDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGM 825
N PG C++ GWG ++ + E +VP+++ + C + + N+T M
Sbjct: 116 ENQVFPPGRNCSIAGWGTVVYQGTTADI---LQEADVPLLSNERCQQQMPEY--NITENM 170
Query: 826 VCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYV 885
+CAGY EGG D+CQGDSGGPL+C+ + +WF+ G+ S+G +CA P+ PGVYA V ++
Sbjct: 171 ICAGYEEGGIDSCQGDSGGPLMCQEN---NRWFLAGVTSFGYECALPNRPGVYARVSRFT 227
Query: 886 TWIQDIM 892
WIQ +
Sbjct: 228 EWIQSFL 234
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA
inhibitor complex, covalent inhibitor, alternative
splicing, blood coagulation; HET: INH; 1.60A {Homo
sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A*
1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A*
1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A*
2fda_A* ...
Length = 238
Score = 300 bits (770), Expect = 5e-96
Identities = 87/246 (35%), Positives = 124/246 (50%), Gaps = 13/246 (5%)
Query: 649 IIGGFESNPGDWPFLAAL-LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQ 707
I+GG S G+WP+ L P C G +I +QW+LTAAHC + + V
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVE--SPKILRVY 58
Query: 708 LGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPP 767
G+ ++ + F V+ + H QY A+ DIAL +L+ V + D P+ LP
Sbjct: 59 SGILNQSEIKEDTSFFGVQEIIIHDQYK-MAESGYDIALLKLETTVNYTDSQRPISLPSK 117
Query: 768 NYELAPGTRCTVIGWGK-REDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMV 826
T C V GWG + ++ + + ++P++T + C K +T M+
Sbjct: 118 GERNVIYTDCWVTGWGYRKLRDKIQNT---LQKAKIPLVTNEECQKRYRGH--KITHKMI 172
Query: 827 CAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYVT 886
CAGY EGGKDAC+GDSGGPL C+ + E W + GI SWG CA PGVY V +YV
Sbjct: 173 CAGYREGGKDACKGDSGGPLSCKHN---EVWHLVGITSWGEGCAQRERPGVYTNVVEYVD 229
Query: 887 WIQDIM 892
WI +
Sbjct: 230 WILEKT 235
>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
1zgi_A* 1zgv_A* 1zrb_A* ...
Length = 289
Score = 301 bits (774), Expect = 7e-96
Identities = 86/263 (32%), Positives = 125/263 (47%), Gaps = 18/263 (6%)
Query: 648 RIIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLT---GLNIDEW 704
RI+ G ++ G P+ L C LISD+WVLTAAHC+ ++
Sbjct: 30 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 89
Query: 705 TVQLGVTRRNSYAFFGTR-FKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVC 763
V++G R Y + + ++ H +YN D DIAL +LK+ V F+D++ PVC
Sbjct: 90 LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 149
Query: 764 LPP---PNYELAPGTRCTVIGWGKREDTRVSEYETAV----NEVEVPIITRDICNKWLNN 816
LP L G + V GWG ++T + V +PI+ R +C
Sbjct: 150 LPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI 209
Query: 817 RELNVTLGMVCAGYPE---GGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPH 873
R +T M CAGY DAC+GDSGGP + +S N +W+ GIVSWG C
Sbjct: 210 R---ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN-NRWYQMGIVSWGEGCDRDG 265
Query: 874 LPGVYAYVPKYVTWIQDIMDKYS 896
G Y +V + WIQ ++D++
Sbjct: 266 KYGFYTHVFRLKKWIQKVIDQFG 288
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
coagulation, BLOO clotting, convertion of fibrinogen to
fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Length = 259
Score = 299 bits (768), Expect = 2e-95
Identities = 85/262 (32%), Positives = 124/262 (47%), Gaps = 18/262 (6%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLT---GLNIDEWT 705
I+ G ++ G P+ L C LISD+WVLTAAHC+ ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 706 VQLGVTRRNSYAFFGTRF-KVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCL 764
V++G R Y + + ++ H +YN D DIAL +LK+ V F+D++ PVCL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 765 PP---PNYELAPGTRCTVIGWGKREDTRVSEYETAV----NEVEVPIITRDICNKWLNNR 817
P L G + V GWG ++T + V +PI+ R +C R
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIR 180
Query: 818 ELNVTLGMVCAGYPE---GGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHL 874
+T M CAGY DAC+GDSGGP + +S N +W+ GIVSWG C
Sbjct: 181 ---ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN-NRWYQMGIVSWGEGCDRDGK 236
Query: 875 PGVYAYVPKYVTWIQDIMDKYS 896
G Y +V + WIQ ++D++
Sbjct: 237 YGFYTHVFRLKKWIQKVIDQFG 258
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 296 bits (759), Expect = 2e-94
Identities = 80/252 (31%), Positives = 115/252 (45%), Gaps = 18/252 (7%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCV--GNLTGLNIDEWTV 706
IIGG ++ G++P+ G L+ D+W+LTAAH + + V
Sbjct: 1 IIGGQKAKMGNFPWQVFTNIHG----RGGGALLGDRWILTAAHTLYPKEHEAQSNASLDV 56
Query: 707 QLGVTRRNSYAFFGTRFKVRGVFAHSQYNIG--AQHDNDIALFQLKQKVKFNDHLLPVCL 764
LG T G +R V H Y + DIAL +L+ V +LLP+CL
Sbjct: 57 FLGHTNVEELMKLGNH-PIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICL 115
Query: 765 PPPNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWL--NNRELNVT 822
P + G V G+G E+ +++ + V +P+ C WL NR +
Sbjct: 116 PDNDTFYDLGLMGYVSGFGVMEE-KIA---HDLRFVRLPVANPQACENWLRGKNRMDVFS 171
Query: 823 LGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVP 882
M CAG+P +DACQGDSGG R + ++W GIVSWGI C+ G Y V
Sbjct: 172 QNMFCAGHPSLKQDACQGDSGGVFAVRDPNT-DRWVATGIVSWGIGCSRG--YGFYTKVL 228
Query: 883 KYVTWIQDIMDK 894
YV WI+ M++
Sbjct: 229 NYVDWIKKEMEE 240
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin
membrane, disulfide bond, glycoprotein, hydrolase,
membrane protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 296 bits (759), Expect = 4e-94
Identities = 91/250 (36%), Positives = 127/250 (50%), Gaps = 15/250 (6%)
Query: 649 IIGGFESNPGDWPFLAAL-LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQ 707
I GG + G WP+ ++ G V C G L+S+QWVL+AAHC + + + + V+
Sbjct: 1 ITGGSSAVAGQWPWQVSITYEG---VHVCGGSLVSEQWVLSAAHCFPSE--HHKEAYEVK 55
Query: 708 LGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPP 767
LG + +SY+ ++ + H Y DIAL QL + + F+ ++ P+ LP
Sbjct: 56 LGAHQLDSYSEDAKVSTLKDIIPHPSYL-QEGSQGDIALLQLSRPITFSRYIRPISLPAA 114
Query: 768 NYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNN-----RELNVT 822
G CTV GWG + + ++EVP+I+R+ CN N V
Sbjct: 115 QASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQ 174
Query: 823 LGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVP 882
MVCAGY EGGKDACQGDSGGPL C W++ GIVSWG C + PGVY
Sbjct: 175 EDMVCAGYVEGGKDACQGDSGGPLSCPVEG---LWYLTGIVSWGDACGARNRPGVYTLAS 231
Query: 883 KYVTWIQDIM 892
Y +WIQ +
Sbjct: 232 SYASWIQSKV 241
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 297 bits (763), Expect = 8e-94
Identities = 86/283 (30%), Positives = 123/283 (43%), Gaps = 22/283 (7%)
Query: 618 DDDYPQLELTCTNIQCGTRRHLHNNFKARKRIIGGFESNPGDWPFLAALLGGPEFVFYCA 677
++ + C + CG N + R+RIIGG ++ G++P+
Sbjct: 63 NEQKGEKIPRCLPV-CGKPV---NPVEQRQRIIGGQKAKMGNFPWQVFTNIHG----RGG 114
Query: 678 GVLISDQWVLTAAHCVGNLTGLNID--EWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYN 735
G L+ D+W+LTAAH + V LG T G +R V H Y
Sbjct: 115 GALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNH-PIRRVSVHPDYR 173
Query: 736 IGA--QHDNDIALFQLKQKVKFNDHLLPVCLPPPNYELAPGTRCTVIGWGKREDTRVSEY 793
+ DIAL +L+ V +LLP+CLP + G V G+G E+
Sbjct: 174 QDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEK----I 229
Query: 794 ETAVNEVEVPIITRDICNKWL--NNRELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSS 851
+ V +P+ C WL NR + M CAG+P +DACQGDSGG R
Sbjct: 230 AHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDP 289
Query: 852 HNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYVTWIQDIMDK 894
+ ++W GIVSWGI C+ G Y V YV WI+ M++
Sbjct: 290 NT-DRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKEMEE 329
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 300 bits (769), Expect = 8e-94
Identities = 91/298 (30%), Positives = 129/298 (43%), Gaps = 21/298 (7%)
Query: 613 KACNDDDDYPQLELTCTNIQCGTRRHLHNNFKARKRIIGGF-ESNPGDWPFLAALL---- 667
P + CG R N +I G E+ G++P++ A+L
Sbjct: 98 GVLPTPSPTPPVVPVLKPSFCGIR----NERGLDFKITGQTNEAEYGEFPWMVAVLKANV 153
Query: 668 --GGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQLGV--TRRNSYAFFGTRF 723
G E C G LI+ VLT AHCV + N+D ++ G T
Sbjct: 154 IPGSGEEQLVCGGSLIAPSVVLTGAHCVNSYQ-SNLDAIKIRAGEWDTLTEKERLPYQER 212
Query: 724 KVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPNYELAPGTRCTVIGWG 783
K+R V HS +N ND+AL L + + D++ +CLP + ++ T C GWG
Sbjct: 213 KIRQVIIHSNFNPKT-VVNDVALLLLDRPLVQADNIGTICLPQQS-QIFDSTECFASGWG 270
Query: 784 KREDTRVSEYETAVNEVEVPIITRDICNKWLNNREL----NVTLGMVCAGYPEGGKDACQ 839
K+E Y + ++++P + RD C L N L + VCAG E GKD C
Sbjct: 271 KKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGG-EQGKDTCT 329
Query: 840 GDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYVTWIQDIMDKYSY 897
GD G PL C N ++ GIV+WGI C ++PGVYA V + WI M
Sbjct: 330 GDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAHFRNWIDQEMQAKGL 387
Score = 39.4 bits (92), Expect = 0.005
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 452 CLEGFQCDVNRCIPLDWQCDGHIDCQDQTDELNCEPCKADEIHCGLNKCISDYHVCDGKV 511
C G CI +CDG + + +N +I N+C S VC G
Sbjct: 37 CGTGADQGKKVCIVY-HRCDGVTNTVTPEEVINTTGEGIFDIRENANECESYLDVCCGLP 95
Query: 512 DCPW 515
+
Sbjct: 96 EGGV 99
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor;
mutagenically deglycosyalted human plasma kallikrein
protease domain; HET: BAM; 1.40A {Homo sapiens} PDB:
2anw_A*
Length = 241
Score = 292 bits (750), Expect = 5e-93
Identities = 86/246 (34%), Positives = 128/246 (52%), Gaps = 13/246 (5%)
Query: 649 IIGGFESNPGDWPFLAAL-LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQ 707
I+GG ES+ G+WP+ +L + C G LI QWVLTAAHC L D W +
Sbjct: 1 IVGGTESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLP--LQDVWRIY 58
Query: 708 LGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPP 767
G+ + +++ + H Y ++ ++DIAL +L+ +++ + P+ LP
Sbjct: 59 SGILELSDITKDTPFSQIKEIIIHQNYK-VSEGNHDIALIKLQAPLEYTEFQKPISLPSK 117
Query: 768 NYELAPGTRCTVIGWGK-REDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMV 826
T C V GWG +E + + +V +P++T + C K + +T MV
Sbjct: 118 GDTSTIYTNCWVTGWGFSKEKGEIQNI---LQKVNIPLVTNEECQKRYQDY--KITQRMV 172
Query: 827 CAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYVT 886
CAGY EGGKDAC+GDSGGPL+C+ + W + GI SWG CA PGVY V +Y+
Sbjct: 173 CAGYKEGGKDACKGDSGGPLVCKHN---GMWRLVGITSWGEGCARREQPGVYTKVAEYMD 229
Query: 887 WIQDIM 892
WI +
Sbjct: 230 WILEKT 235
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine
esterase, glycosylation, extracellular; HET: NAG; 1.75A
{Agkistrodon halys}
Length = 238
Score = 292 bits (750), Expect = 5e-93
Identities = 84/250 (33%), Positives = 119/250 (47%), Gaps = 20/250 (8%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
IIGG E N + FL AL +C G LI+ +WVLTAAHC + ++L
Sbjct: 1 IIGGDECNINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHCDRK-------NFRIKL 53
Query: 709 GV-TRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPP 767
G+ +++ TR F S N D DI L +L VK + H+ P LP
Sbjct: 54 GMHSKKVPNEDEQTRVPKEKFFCLSSKN-YTLWDKDIMLIRLDSPVKNSKHIAPFSLPSS 112
Query: 768 NYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVC 827
+ G+ C ++GWG+ T + Y + V + ++ ++C EL T +C
Sbjct: 113 PP--SVGSVCRIMGWGRISPTEGT-YPDVPHCVNINLLEYEMCRAPYPEFELPATSRTLC 169
Query: 828 AGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGI-KCAHPHLPGVYAYVPKYVT 886
AG EGGKD C+GDSGGPL+C GI SWG CA PH P Y V ++
Sbjct: 170 AGILEGGKDTCKGDSGGPLICN-------GQFQGIASWGDDPCAQPHKPAAYTKVFDHLD 222
Query: 887 WIQDIMDKYS 896
WI++I+ +
Sbjct: 223 WIENIIAGNT 232
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor
complex, serine proteinase, benzamidine phosphonate,
serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens}
PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A*
3p8g_A* 3p8f_A*
Length = 241
Score = 291 bits (748), Expect = 8e-93
Identities = 72/249 (28%), Positives = 127/249 (51%), Gaps = 15/249 (6%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGL---NIDEWT 705
++GG +++ G+WP+ +L + C LIS W+++AAHC + G + +WT
Sbjct: 1 VVGGTDADEGEWPWQVSLHALGQG-HICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWT 59
Query: 706 VQLGVTRRNSYAFFGT-RFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCL 764
LG+ ++ + G +++ + +H +N D DIAL +L++ +++ + P+ L
Sbjct: 60 AFLGLHDQSQRSAPGVQERRLKRIISHPFFN-DFTFDYDIALLELEKPAEYSSMVRPISL 118
Query: 765 PPPNYELAPGTRCTVIGWGK-REDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTL 823
P ++ G V GWG + + + + E+ +I + C L + +T
Sbjct: 119 PDASHVFPAGKAIWVTGWGHTQYGGTGALI---LQKGEIRVINQTTCENLLPQQ---ITP 172
Query: 824 GMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPK 883
M+C G+ GG D+CQGDSGGPL + + F G+VSWG CA + PGVY +P
Sbjct: 173 RMMCVGFLSGGVDSCQGDSGGPLSSVEADG--RIFQAGVVSWGDGCAQRNKPGVYTRLPL 230
Query: 884 YVTWIQDIM 892
+ WI++
Sbjct: 231 FRDWIKENT 239
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 291 bits (746), Expect = 2e-92
Identities = 85/250 (34%), Positives = 124/250 (49%), Gaps = 18/250 (7%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
IIGG S PG P+LAA+ G +CAG L+ WV++AAHC + D +V L
Sbjct: 1 IIGGSSSLPGSHPWLAAIYIG---DSFCAGSLVHTCWVVSAAHCFSHSP--PRDSVSVVL 55
Query: 709 GVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLK----QKVKFNDHLLPVCL 764
G N F + ++ Y++ D+D+ L +LK + + + P+CL
Sbjct: 56 GQHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICL 115
Query: 765 PPPNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNK--WLNNRELNVT 822
P P G +C + GWG ++ VS Y +++ E VP++ C+ ++
Sbjct: 116 PEPGSTFPAGHKCQIAGWGHLDEN-VSGYSSSLREALVPLVADHKCSSPEVYGAD---IS 171
Query: 823 LGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVP 882
M+CAGY + DACQGDSGGPL C + ++ GI+SWG C H PGVY V
Sbjct: 172 PNMLCAGYFDCKSDACQGDSGGPLACEKN---GVAYLYGIISWGDGCGRLHKPGVYTRVA 228
Query: 883 KYVTWIQDIM 892
YV WI D +
Sbjct: 229 NYVDWINDRI 238
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation,
fibrinolysis, plasminogen activation; HET: ABV; 1.45A
{Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U*
1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U*
2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U*
1vj9_U* 1sc8_U* ...
Length = 247
Score = 290 bits (745), Expect = 3e-92
Identities = 79/254 (31%), Positives = 121/254 (47%), Gaps = 19/254 (7%)
Query: 649 IIGGFESNPGDWPFLAALL---GGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWT 705
IIGG + + P+ AA+ G + C G LIS WV++A HC + +++
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYP--KKEDYI 58
Query: 706 VQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIG-AQHDNDIALFQLK----QKVKFNDHLL 760
V LG +R NS +F+V + H Y+ H NDIAL +++ + + + +
Sbjct: 59 VYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQ 118
Query: 761 PVCLPPPNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNK--WLNNRE 818
+ LP + GT C + G+GK T Y + V +I+ C + + +
Sbjct: 119 TISLPSMYNDPQFGTSCEITGFGKENST-DYLYPEQLKMTVVKLISHRECQQPHYYGSE- 176
Query: 819 LNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVY 878
VT M+CA P+ D+CQGDSGGPL+C + + GIVSWG CA PGVY
Sbjct: 177 --VTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG---RMTLTGIVSWGRGCALKDKPGVY 231
Query: 879 AYVPKYVTWIQDIM 892
V ++ WI+
Sbjct: 232 TRVSHFLPWIRSHT 245
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine
proteinases, trypsin-like serine protease, tumor marker,
hydrolase; 1.61A {Homo sapiens}
Length = 232
Score = 289 bits (742), Expect = 4e-92
Identities = 87/248 (35%), Positives = 124/248 (50%), Gaps = 22/248 (8%)
Query: 649 IIGGFESNPGDWPFLAAL-LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQ 707
I+GG E G+WP+ A+L G C LI+ W+++AAHC N WT
Sbjct: 1 IVGGTEVEEGEWPWQASLQWDG---SHRCGATLINATWLVSAAHCFTTYK--NPARWTAS 55
Query: 708 LGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPP 767
GVT + S + +R + H +Y HD DI+L +L V + + + VCLP
Sbjct: 56 FGVTIKPS----KMKRGLRRIIVHEKYK-HPSHDYDISLAELSSPVPYTNAVHRVCLPDA 110
Query: 768 NYELAPGTRCTVIGWGK-REDTRVSEYETAVNEVEVPIITRDICNK--WLNNRELNVTLG 824
+YE PG V G+G + D + + + +V +I CN+ N+ +T
Sbjct: 111 SYEFQPGDVMFVTGFGALKNDGYSQNH---LRQAQVTLIDATTCNEPQAYNDA---ITPR 164
Query: 825 MVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKY 884
M+CAG EG DACQGDSGGPL+ + + W++ GIVSWG +CA P+ PGVY V
Sbjct: 165 MLCAGSLEGKTDACQGDSGGPLVSSDARD--IWYLAGIVSWGDECAKPNKPGVYTRVTAL 222
Query: 885 VTWIQDIM 892
WI
Sbjct: 223 RDWITSKT 230
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 302 bits (775), Expect = 7e-92
Identities = 114/433 (26%), Positives = 167/433 (38%), Gaps = 50/433 (11%)
Query: 470 CDGHIDCQDQTDELNCEPCKADEIHCGL--NKCISDYHVCDGKVDCPWGQDERNCLQ--- 524
C H C T P ++ C L ++ K G ++C
Sbjct: 230 CTHHPGCLFFTFFSQEWPKESQRNLCLLKTSESGLPSTRIK-KSKALSGFSLQSCRHSIP 288
Query: 525 ---LSGMMGDVAKGVLELYRPEHKTFHTSCITKYDPDNSPRAICARLGYTQVNHTELIRE 581
S D E H +C K + C YT +
Sbjct: 289 VFCHSSFYHDTDFL-GEELDIVAAKSHEAC-QKLCTNAVR---CQFFTYTPAQAS----- 338
Query: 582 KPLTKMRHTGHQLDVSYNLPYSPYNDSMLKLKACNDDDDYPQLELTCTNIQCGTRRHLHN 641
+ L + +L + L L + +C T+
Sbjct: 339 -------CNEGKGKCYLKLSSNGSPTKILHGRGGISG---YTLRLCKMDNECTTKIK--- 385
Query: 642 NFKARKRIIGGFESNPGDWPFLAAL-LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLN 700
RI+GG S G+WP+ L P C G +I +QW+LTAAHC + +
Sbjct: 386 -----PRIVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVE--S 438
Query: 701 IDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLL 760
V G+ ++ + F V+ + H QY A+ DIAL +L+ V + D
Sbjct: 439 PKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYK-MAESGYDIALLKLETTVNYTDSQR 497
Query: 761 PVCLPPPNYELAPGTRCTVIGWGK-REDTRVSEYETAVNEVEVPIITRDICNKWLNNREL 819
P+CLP T C V GWG + ++ + + ++P++T + C K
Sbjct: 498 PICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNT---LQKAKIPLVTNEECQKRYRGH-- 552
Query: 820 NVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYA 879
+T M+CAGY EGGKDAC+GDSGGPL C+ + E W + GI SWG CA PGVY
Sbjct: 553 KITHKMICAGYREGGKDACKGDSGGPLSCKHN---EVWHLVGITSWGEGCAQRERPGVYT 609
Query: 880 YVPKYVTWIQDIM 892
V +YV WI +
Sbjct: 610 NVVEYVDWILEKT 622
Score = 37.9 bits (88), Expect = 0.017
Identities = 16/133 (12%), Positives = 28/133 (21%), Gaps = 6/133 (4%)
Query: 392 CRSLCQETKRRCGFF-FDVFGLPLPSMENCNLYPDDMKYPDVKCVGHKQVQEEKIRAMNK 450
C +C C FF F P S N L + + +
Sbjct: 226 CGRICTHHPG-CLFFTFFSQEWPKESQRNLCLLKTSESGLPSTRIKKSKALSG---FSLQ 281
Query: 451 ICLEGFQCD-VNRCIPLDWQCDGHIDCQDQTDELNCEPCKADEIHCGLNKCISDYHVCDG 509
C + +D C+ + + C C+
Sbjct: 282 SCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQFFTYTPAQASCNE 341
Query: 510 KVDCPWGQDERNC 522
+ + N
Sbjct: 342 GKGKCYLKLSSNG 354
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 296 bits (758), Expect = 8e-92
Identities = 89/303 (29%), Positives = 133/303 (43%), Gaps = 25/303 (8%)
Query: 615 CNDDDDYPQLELTCTNIQCGTRRHLHNN-------FKARKRIIGGFESNPGDWPFLAALL 667
+ + E C ++ L + RI+ G ++ G P+ L
Sbjct: 125 FFNPATFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLF 184
Query: 668 GGPEFVFYCAGVLISDQWVLTAAHCVGNLT---GLNIDEWTVQLGVTRRNSYAFFGTR-F 723
C LISD+WVLTAAHC+ ++ V++G R Y +
Sbjct: 185 RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKIS 244
Query: 724 KVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPP---PNYELAPGTRCTVI 780
+ ++ H +YN D DIAL +LK+ V F+D++ PVCLP L G + V
Sbjct: 245 MLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 304
Query: 781 GWGKREDTRVSEYETAV----NEVEVPIITRDICNKWLNNRELNVTLGMVCAGYPE---G 833
GWG ++T + V +PI+ R +C R +T M CAGY
Sbjct: 305 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIR---ITDNMFCAGYKPDEGK 361
Query: 834 GKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYVTWIQDIMD 893
DAC+GDSGGP + +S N +W+ GIVSWG C G Y +V + WIQ ++D
Sbjct: 362 RGDACEGDSGGPFVMKSPFN-NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 420
Query: 894 KYS 896
++
Sbjct: 421 QFG 423
Score = 31.4 bits (71), Expect = 1.4
Identities = 8/75 (10%), Positives = 14/75 (18%), Gaps = 6/75 (8%)
Query: 454 EGFQCDVNRCIPLDWQCDGHIDCQDQTDELNCE-----PCKADEIHCGLNKCISDYH-VC 507
G D C + + D DE + ++ C
Sbjct: 79 AGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEADC 138
Query: 508 DGKVDCPWGQDERNC 522
+ E
Sbjct: 139 GLRPLFEKKSLEDKT 153
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_B
Length = 251
Score = 286 bits (734), Expect = 1e-90
Identities = 81/255 (31%), Positives = 118/255 (46%), Gaps = 19/255 (7%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCV-----------GNLT 697
I G + G P++A L +C G L+ W++TAAHC+ +
Sbjct: 1 IFNGRPAQKGTTPWIAMLSH-LNGQPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSD 59
Query: 698 GLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFND 757
L+ ++ + LG R V+ H QY+ +ND+AL +L + N
Sbjct: 60 LLSPSDFKIILGKHWRLRSDENEQHLGVKHTTLHPQYD-PNTFENDVALVELLESPVLNA 118
Query: 758 HLLPVCLPPPNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNR 817
++P+CLP G V GWGK+ R E + E+E+PI+ C K
Sbjct: 119 FVMPICLPEGPQ--QEGAMVIVSGWGKQFLQRFPET---LMEIEIPIVDHSTCQKAYAPL 173
Query: 818 ELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGV 877
+ VT M+CAG EGGKDAC GDSGGP++ + QW++ G VSWG C GV
Sbjct: 174 KKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRER-GQWYLVGTVSWGDDCGKKDRYGV 232
Query: 878 YAYVPKYVTWIQDIM 892
Y+Y+ WIQ +
Sbjct: 233 YSYIHHNKDWIQRVT 247
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 291 bits (746), Expect = 3e-90
Identities = 85/284 (29%), Positives = 125/284 (44%), Gaps = 22/284 (7%)
Query: 617 DDDDYPQLELTCTNIQCGTRRHLHNNFKARKRIIGGFESNPGDWPFLAALLGGPEFVFYC 676
++ + C + CG N + R++IIGG ++ G++P+
Sbjct: 130 KNEQKGEKIPRCLPV-CGKPV---NPVEQRQQIIGGQKAKMGNFPWQVFTNIHG----RG 181
Query: 677 AGVLISDQWVLTAAHCV--GNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQY 734
G L+ D+W+LTAAH + + V LG T G +R V H Y
Sbjct: 182 GGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNH-PIRRVSVHPDY 240
Query: 735 NIG--AQHDNDIALFQLKQKVKFNDHLLPVCLPPPNYELAPGTRCTVIGWGKREDTRVSE 792
+ DIAL +L+ V +LLP+CLP + G V G+G E+ +
Sbjct: 241 RQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIAHD 300
Query: 793 YETAVNEVEVPIITRDICNKWL--NNRELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRS 850
+ V +P+ C WL NR + M CAG+P +DACQGDSGG R
Sbjct: 301 ----LRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRD 356
Query: 851 SHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYVTWIQDIMDK 894
+ ++W GIVSWGI C+ G Y V YV WI+ M++
Sbjct: 357 PNT-DRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKEMEE 397
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase;
2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Length = 240
Score = 282 bits (725), Expect = 2e-89
Identities = 84/247 (34%), Positives = 118/247 (47%), Gaps = 16/247 (6%)
Query: 648 RIIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQ 707
IIGG E +P PF+A++ G V C GVLI QWVLTAAHC T TV
Sbjct: 2 EIIGGKEVSPHSRPFMASIQYGGHHV--CGGVLIDPQWVLTAAHCQYRFT--KGQSPTVV 57
Query: 708 LGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPP 767
LG + +++ S+ NDI L +L+ K N H+ + +
Sbjct: 58 LGAHSLSKNEASKQTLEIKKFIPFSRVT-SDPQSNDIMLVKLQTAAKLNKHVKMLHIRSK 116
Query: 768 NYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNK-WLNNRELNVTLGMV 826
L GT+C V GWG + + EV V +++R +CN N + +T MV
Sbjct: 117 T-SLRSGTKCKVTGWGATDPD-SLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMV 174
Query: 827 CAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYV-PKYV 885
CAG +G KD+C+GD+GGPL+C+ IVS G +C PG+Y + KY
Sbjct: 175 CAGDAKGQKDSCKGDAGGPLICK-------GVFHAIVSGGHECGVATKPGIYTLLTKKYQ 227
Query: 886 TWIQDIM 892
TWI+ +
Sbjct: 228 TWIKSNL 234
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic
resolution, hydrolase/hydrolase inhibitor complex; 1.20A
{Pontastacus leptodactylus} SCOP: b.47.1.2
Length = 237
Score = 282 bits (724), Expect = 2e-89
Identities = 72/244 (29%), Positives = 112/244 (45%), Gaps = 14/244 (5%)
Query: 649 IIGGFESNPGDWPFLAAL--LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTV 706
I+GG ++ G++P+ + +C + ++ + +TA HCV N +
Sbjct: 1 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQI 60
Query: 707 QLGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPP 766
G + V + H ++ DNDI+L +L + FND++ P+ LP
Sbjct: 61 VAGELDMSVNEGSEQIITVSKIILHENFD-YNLLDNDISLLKLSGSLTFNDNVAPIALPE 119
Query: 767 PNYELAPGTRCTVIGWGK-REDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGM 825
+ V GWG E + + +V VP+++ + C + M
Sbjct: 120 QGHT--ATGDVIVTGWGTTSEGGNTPDV---LQKVTVPLVSDEDCRADYGAD--EILDSM 172
Query: 826 VCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYV 885
+CAG PEGGKD+CQGDSGGPL + ++ GIVSWG CA P PGVY V +V
Sbjct: 173 ICAGVPEGGKDSCQGDSGGPLAASDT---GSTYLAGIVSWGYGCARPGYPGVYTEVSYHV 229
Query: 886 TWIQ 889
WI+
Sbjct: 230 DWIK 233
>1aut_C Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2
PDB: 3f6u_H*
Length = 250
Score = 282 bits (724), Expect = 3e-89
Identities = 79/255 (30%), Positives = 118/255 (46%), Gaps = 20/255 (7%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
+I G + GD P+ LL + C VLI WVLTAAHC+ + V+L
Sbjct: 1 LIDGKMTRRGDSPWQVVLLDSKKK-LACGAVLIHPSWVLTAAHCM-----DESKKLLVRL 54
Query: 709 GVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPN 768
G + + ++ VF H Y+ + DNDIAL L Q + ++P+CLP
Sbjct: 55 GEYDLRRWEKWELDLDIKEVFVHPNYS-KSTTDNDIALLHLAQPATLSQTIVPICLPDSG 113
Query: 769 Y----ELAPGTRCTVIGWGK---REDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNV 821
G V GWG RE +N +++P++ + C++ ++N V
Sbjct: 114 LAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSNM---V 170
Query: 822 TLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYV 881
+ M+CAG +DAC+GDSGGP++ WF+ G+VSWG C H GVY V
Sbjct: 171 SENMLCAGILGDRQDACEGDSGGPMVASFH---GTWFLVGLVSWGEGCGLLHNYGVYTKV 227
Query: 882 PKYVTWIQDIMDKYS 896
+Y+ WI +
Sbjct: 228 SRYLDWIHGHIRDKE 242
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating
factor-I, PPAF-I, serine proteas hydrolase; HET: NAG;
1.70A {Holotrichia diomphalia}
Length = 278
Score = 283 bits (725), Expect = 6e-89
Identities = 85/277 (30%), Positives = 135/277 (48%), Gaps = 29/277 (10%)
Query: 632 QCGTRRHLHNNFKARKRIIGGFESNPGDWPFLAALL---GGPEFVFYCAGVLISDQWVLT 688
CG + +I+ G ++ P ++P+ A + F C G LI++++++T
Sbjct: 13 DCGYQVEAD-------KILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVT 65
Query: 689 AAHCV-GNLTGLNIDEWTVQLG-----------VTRRNSYAFFGTRFKVRGVFAHSQYNI 736
AAHCV G + + V+LG R + H Y
Sbjct: 66 AAHCVAGRVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVD 125
Query: 737 GAQ-HDNDIALFQLKQKVKFNDHLLPVCLPPPNYELAPGTRCTVIGWGKREDTRVSEYET 795
G++ +DIAL +L ++V+F +++ PVCLP PN E+ G R TV+GWG+ E + S
Sbjct: 126 GSKDRYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRTETGQYSTI-- 183
Query: 796 AVNEVEVPIITRDICNKWLNNRELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFE 855
++ VP++ + C K + V +CAG E KD+C GDSGGPLL ++
Sbjct: 184 -KQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAGG-EKAKDSCGGDSGGPLLAERANQ-- 239
Query: 856 QWFVGGIVSWGIKCAHPHLPGVYAYVPKYVTWIQDIM 892
Q+F+ G+VS+G C PG+Y V KY WI+ +
Sbjct: 240 QFFLEGLVSFGATCGTEGWPGIYTKVGKYRDWIEGNI 276
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease,
fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Length = 252
Score = 282 bits (723), Expect = 6e-89
Identities = 90/260 (34%), Positives = 123/260 (47%), Gaps = 26/260 (10%)
Query: 649 IIGGFESNPGDWPFLAALL----GGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEW 704
I GG ++ P+ AA+ P F C G+LIS W+L+AAHC
Sbjct: 1 IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERF--PPHHL 58
Query: 705 TVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLK----QKVKFNDHLL 760
TV LG T R +F+V H +++ +DNDIAL QLK + + + +
Sbjct: 59 TVILGRTYRVVPGEEEQKFEVEKYIVHKEFD-DDTYDNDIALLQLKSDSSRCAQESSVVR 117
Query: 761 PVCLPPPNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNK--WLNNRE 818
VCLPP + +L T C + G+GK E Y + E V + C LN
Sbjct: 118 TVCLPPADLQLPDWTECELSGYGKHEAL-SPFYSERLKEAHVRLYPSSRCTSQHLLNRT- 175
Query: 819 LNVTLGMVCAGYPEGG------KDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHP 872
VT M+CAG G DACQGDSGGPL+C + + + GI+SWG+ C
Sbjct: 176 --VTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDG---RMTLVGIISWGLGCGQK 230
Query: 873 HLPGVYAYVPKYVTWIQDIM 892
+PGVY V Y+ WI+D M
Sbjct: 231 DVPGVYTKVTNYLDWIRDNM 250
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 280 bits (719), Expect = 1e-88
Identities = 89/262 (33%), Positives = 135/262 (51%), Gaps = 23/262 (8%)
Query: 633 CGTRRHLHNNFKARKRIIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHC 692
CG + K R++GG ++P WP+ +L +C G LIS +WVLTAAHC
Sbjct: 4 CGKPQV--EPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGM-HFCGGTLISPEWVLTAAHC 60
Query: 693 VGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQK 752
+ + V LG + + +V +F DIAL +L
Sbjct: 61 LEKS--PRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPTRK-------DIALLKLSSP 111
Query: 753 VKFNDHLLPVCLPPPNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNK 812
D ++P CLP PNY +A T C + GWG+ + T + + E ++P+I +CN+
Sbjct: 112 AVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGL---LKEAQLPVIENKVCNR 168
Query: 813 --WLNNRELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCA 870
+LN R V +CAG+ GG D+CQGD+GGPL+C +++ + G+ SWG+ CA
Sbjct: 169 YEFLNGR---VQSTELCAGHLAGGTDSCQGDAGGPLVCFEK---DKYILQGVTSWGLGCA 222
Query: 871 HPHLPGVYAYVPKYVTWIQDIM 892
P+ PGVY V ++VTWI+ +M
Sbjct: 223 RPNKPGVYVRVSRFVTWIEGVM 244
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG;
0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A
1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A*
1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E
1pqa_A*
Length = 224
Score = 279 bits (717), Expect = 2e-88
Identities = 76/242 (31%), Positives = 115/242 (47%), Gaps = 22/242 (9%)
Query: 649 IIGGFESNPGDWPFLAAL-LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQ 707
I+GG ++ GD+PF+ ++ G +C G L++ VLTAAHCV +G + ++
Sbjct: 1 IVGGTSASAGDFPFIVSISRNG---GPWCGGSLLNANTVLTAAHCV---SGYAQSGFQIR 54
Query: 708 LGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPP 767
G R S G + V H Y+ ++ND+A+ +L + ++ L
Sbjct: 55 AGSLSRTSG---GITSSLSSVRVHPSYS---GNNNDLAILKLSTSIPSGGNIGYARLAAS 108
Query: 768 NYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVC 827
+ G+ TV GWG + S + +V VPI++R C +T M C
Sbjct: 109 GSDPVAGSSATVAGWGATSEG-GSSTPVNLLKVTVPIVSRATCRAQYGTSA--ITNQMFC 165
Query: 828 AGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYVTW 887
AG GGKD+CQGDSGGP++ + G VSWG CA P+ GVYA V ++
Sbjct: 166 AGVSSGGKDSCQGDSGGPIVD------SSNTLIGAVSWGNGCARPNYSGVYASVGALRSF 219
Query: 888 IQ 889
I
Sbjct: 220 ID 221
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S
3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Length = 235
Score = 279 bits (717), Expect = 2e-88
Identities = 72/248 (29%), Positives = 120/248 (48%), Gaps = 20/248 (8%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
++GG ++ PG +P+ L G + +C G +++++W++TAAHCV + TV
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDA--FCGGSIVNEKWIVTAAHCV-----ETGVKITVVA 53
Query: 709 GVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQ-HDNDIALFQLKQKVKFNDHLLPVCLPPP 767
G + V + H +N +++DIAL +L + + N ++ P+C+
Sbjct: 54 GEHNIEETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADK 113
Query: 768 NY--ELAPGTRCTVIGWGK-REDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLG 824
Y V GWG+ R + + + VP++ R C + +T
Sbjct: 114 EYTNIFLKFGSGYVSGWGRVFHKGRSALV---LQYLRVPLVDRATCLRSTKFT---ITNN 167
Query: 825 MVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKY 884
M CAG+ EGG+D+CQGDSGGP + F+ GI+SWG +CA G+Y V +Y
Sbjct: 168 MFCAGFHEGGRDSCQGDSGGPHVTEVE---GTSFLTGIISWGEECAMKGKYGIYTKVSRY 224
Query: 885 VTWIQDIM 892
V WI++
Sbjct: 225 VNWIKEKT 232
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
...
Length = 254
Score = 280 bits (719), Expect = 2e-88
Identities = 80/250 (32%), Positives = 114/250 (45%), Gaps = 17/250 (6%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
I+GG G+ P+ LL C G LI+ WV++AAHC + N L
Sbjct: 1 IVGGKVCPKGECPWQVLLLVN--GAQLCGGTLINTIWVVSAAHCFDKIK--NWRNLIAVL 56
Query: 709 GVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPN 768
G + + +V V S Y ++DIAL +L Q V DH++P+CLP
Sbjct: 57 GEHDLSEHDGDEQSRRVAQVIIPSTYV-PGTTNHDIALLRLHQPVVLTDHVVPLCLPERT 115
Query: 769 Y---ELAPGTRCTVIGWGK-REDTRVSEYETAVNEVEVPIITRDICNK--WLNNRELNVT 822
+ LA V GWG+ + + + + VP + C + N+T
Sbjct: 116 FSERTLAFVRFSLVSGWGQLLDRGATALE---LMVLNVPRLMTQDCLQQSRKVGDSPNIT 172
Query: 823 LGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVP 882
M CAGY +G KD+C+GDSGGP W++ GIVSWG CA GVY V
Sbjct: 173 EYMFCAGYSDGSKDSCKGDSGGPHATHYR---GTWYLTGIVSWGQGCATVGHFGVYTRVS 229
Query: 883 KYVTWIQDIM 892
+Y+ W+Q +M
Sbjct: 230 QYIEWLQKLM 239
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate
conformations, alternative splicing, glycoprotein,
hydrolase, protease, secreted; HET: K7J; 1.00A {Homo
sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Length = 224
Score = 279 bits (716), Expect = 2e-88
Identities = 90/248 (36%), Positives = 123/248 (49%), Gaps = 26/248 (10%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
II G G P+ ALL G + +C GVL++++WVLTAAHC N E+TV L
Sbjct: 1 IIDGAPCARGSHPWQVALLSGNQL--HCGGVLVNERWVLTAAHCKMN-------EYTVHL 51
Query: 709 GVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPN 768
G R K F H Y+ H ND+ L +L + + + + V LP
Sbjct: 52 GSDTLGDRR--AQRIKASKSFRHPGYS-TQTHVNDLMLVKLNSQARLSSMVKKVRLPSRC 108
Query: 769 YELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVCA 828
PGT CTV GWG V+ + + + V+V +I+ C K + + M+CA
Sbjct: 109 --EPPGTTCTVSGWGTTTSPDVT-FPSDLMCVDVKLISPQDCTKVYKDL---LENSMLCA 162
Query: 829 GYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWG-IKCAHPHLPGVYAYVPKYVTW 887
G P+ K+AC GDSGGPL+CR + G+VSWG C P+ PGVY V K+ W
Sbjct: 163 GIPDSKKNACNGDSGGPLVCR-------GTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKW 215
Query: 888 IQDIMDKY 895
I D M K+
Sbjct: 216 INDTMKKH 223
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 282 bits (724), Expect = 5e-88
Identities = 78/279 (27%), Positives = 119/279 (42%), Gaps = 33/279 (11%)
Query: 633 CGTRRHLHNNFKARKRIIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHC 692
CG R F+ ++RIIGG +++ ++P+ + G LI++ WVLTAAH
Sbjct: 70 CGVPR---EPFEEKQRIIGGSDADIKNFPWQVFFDN-----PWAGGALINEYWVLTAAHV 121
Query: 693 VGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQ------HDNDIAL 746
V + + V VF H + + A DNDIAL
Sbjct: 122 VEGNREPTM--YVGSTSVQTSRLAK--SKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIAL 177
Query: 747 FQLKQKVKFNDHLLPVCLPPP--NYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPI 804
+LK VK + P+CLP +Y L G + GWG+ E + + +P+
Sbjct: 178 VRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEKRDRAVR---LKAARLPV 234
Query: 805 ITRDICNKWLNNRELN------VTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWF 858
C + + T M+CAG E G D+C+GDSGG + ++ +++
Sbjct: 235 APLRKCKEVKVEKPTADAEAYVFTPNMICAGG-EKGMDSCKGDSGGAFAVQDPNDKTKFY 293
Query: 859 VGGIVSWGIKCAHPHLPGVYAYVPKYVTWIQDIMDKYSY 897
G+VSWG +C G+Y V YV WI M + S
Sbjct: 294 AAGLVSWGPQCGT---YGLYTRVKNYVDWIMKTMQENST 329
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation,
hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC;
1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A*
2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A*
3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Length = 245
Score = 278 bits (713), Expect = 1e-87
Identities = 84/254 (33%), Positives = 122/254 (48%), Gaps = 17/254 (6%)
Query: 649 IIGGFESNPGDWPFLAAL-LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQ 707
I+GG E+ WP+ +L + ++ +C G LI QWVLTAAHCVG ++ VQ
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCVGPDV-KDLATLRVQ 59
Query: 708 LGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPP 767
L V + H Q+ Q DIAL +L++ V + + V LPP
Sbjct: 60 LREQHLYYQD---QLLPVSRIIVHPQFY-IIQTGADIALLELEEPVNISSRVHTVMLPPA 115
Query: 768 NYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELN------V 821
+ PG C V GWG ++ + +V+VPI+ IC+ + +
Sbjct: 116 SETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRII 175
Query: 822 TLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYV 881
M+CAG +D+CQGDSGGPL+C+ + W G+VSWG CA P+ PG+Y V
Sbjct: 176 RDDMLCAGN--SQRDSCQGDSGGPLVCKVN---GTWLQAGVVSWGEGCAQPNRPGIYTRV 230
Query: 882 PKYVTWIQDIMDKY 895
Y+ WI + K
Sbjct: 231 TYYLDWIHHYVPKK 244
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI,
protein-protein interaction, non-cognate binding, S1
pocket, primary specificity; 1.70A {Bos taurus} SCOP:
b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E
1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A
1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Length = 245
Score = 277 bits (711), Expect = 2e-87
Identities = 82/260 (31%), Positives = 121/260 (46%), Gaps = 18/260 (6%)
Query: 633 CGTRRHLHNNFKARKRIIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHC 692
CG + RI+ G E+ PG WP+ +L +C G LI++ WV+TAAHC
Sbjct: 1 CGVPA-IQPVLSGLSRIVNGEEAVPGSWPWQVSLQDKT-GFHFCGGSLINENWVVTAAHC 58
Query: 693 VGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQK 752
V G + S + + K+ VF +S+YN +NDI L +L
Sbjct: 59 GVT------TSDVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYN-SLTINNDITLLKLSTA 111
Query: 753 VKFNDHLLPVCLPPPNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNK 812
F+ + VCLP + + A GT C GWG T + + + +P+++ C K
Sbjct: 112 ASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRYTNAN-TPDRLQQASLPLLSNTNCKK 170
Query: 813 WLNNRELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHP 872
+ + + M+CAG G +C GDSGGPL+C+ + W + GIVSWG
Sbjct: 171 YWGTK---IKDAMICAG--ASGVSSCMGDSGGPLVCKKN---GAWTLVGIVSWGSSTCST 222
Query: 873 HLPGVYAYVPKYVTWIQDIM 892
PGVYA V V W+Q +
Sbjct: 223 STPGVYARVTALVNWVQQTL 242
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 278 bits (714), Expect = 3e-87
Identities = 82/256 (32%), Positives = 111/256 (43%), Gaps = 20/256 (7%)
Query: 649 IIGGFESNPGDWPFLAAL----LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEW 704
IIGG ++ G WP++ +L C G L++ QW+LTAAHC + +W
Sbjct: 1 IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIKK--KVTDW 58
Query: 705 TVQLGVTRRNSYAFFGT-----RFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHL 759
+ G V + H +Y+ + NDIAL ++ V +
Sbjct: 59 RLIFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYS-ASSEANDIALMKITPPVTCGHFI 117
Query: 760 LPVCLPPPNYE-LAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNK--WLNN 816
P CLP C V GWG + + E V +I +CN W N
Sbjct: 118 GPGCLPQFRAGPPRVPQTCWVAGWGFLQ-ENARRTSPMLQEARVDLIDLGLCNSTRWYNG 176
Query: 817 RELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPG 876
R + VCAGYPEG D CQGDSGGPL+C+ S + V GI SWG+ CA PG
Sbjct: 177 R---IRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAE-NSYVVVGITSWGVGCARAKRPG 232
Query: 877 VYAYVPKYVTWIQDIM 892
VY Y+ WI +
Sbjct: 233 VYTSTWSYLNWIASKI 248
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 276 bits (709), Expect = 3e-87
Identities = 76/248 (30%), Positives = 123/248 (49%), Gaps = 20/248 (8%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
I+GG+ G+ P+ A L+ +C G ++S+ ++LTAAHC+ + V++
Sbjct: 1 IVGGYNCKDGEVPWQALLINEENE-GFCGGTILSEFYILTAAHCLYQ-----AKRFKVRV 54
Query: 709 GVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPN 768
G +V V H+++ +D DIA+ +LK + F ++ P LP
Sbjct: 55 GDRNTEQEEGGEAVHEVEVVIKHNRFT-KETYDFDIAVLRLKTPITFRMNVAPASLPTA- 112
Query: 769 YELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVCA 828
A GT+C + GWG + Y + ++ P++++ C + +T M C
Sbjct: 113 -PPATGTKCLISGWGNTASSGAD-YPDELQCLDAPVLSQAKCEASYPGK---ITSNMFCV 167
Query: 829 GYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYVTWI 888
G+ EGGKD+CQGDSGGP++C + G+VSWG CA + PGVY V YV WI
Sbjct: 168 GFLEGGKDSCQGDSGGPVVCN-------GQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWI 220
Query: 889 QDIMDKYS 896
++ + S
Sbjct: 221 KNTIAANS 228
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen,
secreted, protease, hydrolase, polymorphism,
glycoprotein, gamma-carboxyglutamic acid; HET: BI7;
1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A*
2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D
2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B*
1lqd_B* 1nfu_A* 1nfw_A* ...
Length = 241
Score = 276 bits (709), Expect = 5e-87
Identities = 78/248 (31%), Positives = 119/248 (47%), Gaps = 20/248 (8%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
I+GG E G+ P+ A L+ E +C G ++S+ ++LTAAHC+ + V++
Sbjct: 1 IVGGQECKDGECPWQALLINE-ENEGFCGGTILSEFYILTAAHCL-----YQAKRFKVRV 54
Query: 709 GVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPN 768
G +V V H+++ +D DIA+ +LK + F ++ P CLP +
Sbjct: 55 GDRNTEQEEGGEAVHEVEVVIKHNRFT-KETYDFDIAVLRLKTPITFRMNVAPACLPERD 113
Query: 769 Y---ELAPGTRCTVIGWGK-REDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLG 824
+ L V G+G+ E S + +EVP + R+ C + +T
Sbjct: 114 WAESTLMTQKTGIVSGFGRTHEKGEQSTR---LKMLEVPYVDRNSCKLSSSFI---ITQN 167
Query: 825 MVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKY 884
M CAGY +DACQGDSGGP + R + +FV GIVSWG CA G+Y V +
Sbjct: 168 MFCAGYDTKQEDACQGDSGGPHVTRFK---DTYFVTGIVSWGEGCARKGKYGIYTKVTAF 224
Query: 885 VTWIQDIM 892
+ WI M
Sbjct: 225 LKWIDRSM 232
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 275 bits (707), Expect = 6e-87
Identities = 76/246 (30%), Positives = 111/246 (45%), Gaps = 24/246 (9%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
++GG E N + PFL AL +CAG LI+ +WVLTAAHC ++L
Sbjct: 1 VVGGDECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHCDRR-------NIRIKL 53
Query: 709 GV-TRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPP 767
G+ ++ R F + D DI L +L++ V ++ H+ PV LP
Sbjct: 54 GMHSKNIRNEDEQIRVPRGKYFCLNTKF-PNGLDKDIMLIRLRRPVTYSTHIAPVSLPSR 112
Query: 768 NYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVC 827
+ G+RC ++GWGK + Y + + I+ C + +C
Sbjct: 113 SR--GVGSRCRIMGWGK---ISTTTYPDVPHCTNIFIVKHKWCEPLYPW--VPADSRTLC 165
Query: 828 AGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIK-CAHPHLPGVYAYVPKYVT 886
AG +GG+D C GDSGGPL+C + GIV+ G + C P VY V Y
Sbjct: 166 AGILKGGRDTCHGDSGGPLIC-------NGEMHGIVAGGSEPCGQHLKPAVYTKVFDYNN 218
Query: 887 WIQDIM 892
WIQ I+
Sbjct: 219 WIQSII 224
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 275 bits (705), Expect = 8e-87
Identities = 78/245 (31%), Positives = 109/245 (44%), Gaps = 26/245 (10%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
++ G + P+ AAL C GVLI WVLTAAHC V L
Sbjct: 1 LVHGGPCDKTSHPYQAALYTSGHL--LCGGVLIHPLWVLTAAHCKK-------PNLQVFL 51
Query: 709 GVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPN 768
G + V H Y+ A HD DI L +L + K ++ + P+ L
Sbjct: 52 GKHNLRQRESSQEQSSVVRAVIHPDYD-AASHDQDIMLLRLARPAKLSELIQPLPLE--R 108
Query: 769 YELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVCA 828
A T C ++GWGK D + + + +++R+ C + +T M+CA
Sbjct: 109 DCSANTTSCHILGWGKTADGDFPDT---IQCAYIHLVSREECEHAYPGQ---ITQNMLCA 162
Query: 829 GYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWG-IKCAHPHLPGVYAYVPKYVTW 887
G + GKD+CQGDSGGPL+C + G+VSWG I C PGVY V +Y W
Sbjct: 163 GDEKYGKDSCQGDSGGPLVC-------GDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNW 215
Query: 888 IQDIM 892
IQ +
Sbjct: 216 IQKTI 220
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus}
PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A
1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A*
1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A
...
Length = 223
Score = 275 bits (705), Expect = 9e-87
Identities = 81/244 (33%), Positives = 115/244 (47%), Gaps = 24/244 (9%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
I+GG+ P+ +L G +C G LI+ QWV++AAHC + V+L
Sbjct: 1 IVGGYTCGANTVPYQVSLNSG---YHFCGGSLINSQWVVSAAHCYKS-------GIQVRL 50
Query: 709 GVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPN 768
G N H YN +NDI L +LK N + + LP
Sbjct: 51 GEDNINVVEGNEQFISASKSIVHPSYN-SNTLNNDIMLIKLKSAASLNSRVASISLPTSC 109
Query: 769 YELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVCA 828
+ GT+C + GWG + + S Y + ++ PI++ C + +T M CA
Sbjct: 110 A--SAGTQCLISGWGNTKSSGTS-YPDVLKCLKAPILSDSSCKSAYPGQ---ITSNMFCA 163
Query: 829 GYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYVTWI 888
GY EGGKD+CQGDSGGP++C + GIVSWG CA + PGVY V YV+WI
Sbjct: 164 GYLEGGKDSCQGDSGGPVVC-------SGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216
Query: 889 QDIM 892
+ +
Sbjct: 217 KQTI 220
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation,
pyroglutamation, eight-membered R peptide bond,
hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Length = 238
Score = 274 bits (704), Expect = 2e-86
Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 13/246 (5%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
I+GG E+ P ++P+ ++ +C G +I+D+WV+ AAHC+ G ++ +
Sbjct: 1 IVGGIEARPYEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCM---QGEAPALVSLVV 57
Query: 709 GVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPN 768
G ++ + V +F + Y+ A +ND+++ + + F+ ++ P+C P P
Sbjct: 58 GEHDSSAASTVRQTHDVDSIFVNENYD-PATLENDVSVIKTAVAITFDINVGPICAPDPA 116
Query: 769 YELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVCA 828
+ + GWG V + V + I T C+ + + M+CA
Sbjct: 117 NDY-VYRKSQCSGWGTINSGGVC-CPAVLRYVTLNITTNAFCDAVYTSD--TIYDDMICA 172
Query: 829 GYPEG--GKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYVT 886
G +D+CQGDSGGPL + + + GIVSWGI CA + PGVY+ V +
Sbjct: 173 TDNTGMTDRDSCQGDSGGPLSVKDGSG--IFSLVGIVSWGIGCASGY-PGVYSRVGFHAG 229
Query: 887 WIQDIM 892
WI D +
Sbjct: 230 WITDTI 235
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A*
1kyn_A*
Length = 224
Score = 274 bits (702), Expect = 2e-86
Identities = 80/245 (32%), Positives = 107/245 (43%), Gaps = 24/245 (9%)
Query: 649 IIGGFESNPGDWPFLAAL-LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQ 707
IIGG ES P P++A L + P C G L+ + +VLTAAHC G+ V
Sbjct: 1 IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGS-------NINVT 53
Query: 708 LGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPP 767
LG R H QYN NDI L QL ++V+ N ++ PV LP
Sbjct: 54 LGAHNIQRRENTQQHITARRAIRHPQYN-QRTIQNDIMLLQLSRRVRRNRNVNPVALPRA 112
Query: 768 NYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVC 827
L PGT CTV GWG+ + + EV++ + C + + +C
Sbjct: 113 QEGLRPGTLCTVAGWGR---VSMRRGTDTLREVQLRVQRDRQCLRIFGSY---DPRRQIC 166
Query: 828 AGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYVTW 887
G K A +GDSGGPLLC GIVS+G P P V+ V ++ W
Sbjct: 167 VGDRRERKAAFKGDSGGPLLC-------NNVAHGIVSYGKSSGVP--PEVFTRVSSFLPW 217
Query: 888 IQDIM 892
I+ M
Sbjct: 218 IRTTM 222
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 273 bits (702), Expect = 2e-86
Identities = 84/248 (33%), Positives = 113/248 (45%), Gaps = 27/248 (10%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
I+GG+E P +L G +C G L+++ WV++AAHC + V+L
Sbjct: 1 IVGGYECKAYSQPHQVSLNSG---YHFCGGSLVNENWVVSAAHCYKS-------RVEVRL 50
Query: 709 GVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPN 768
G V H Y+ DNDI L +L + N ++ PV LP
Sbjct: 51 GEHNIKVTEGSEQFISSSRVIRHPNYS-SYNIDNDIMLIKLSKPATLNTYVQPVALP--T 107
Query: 769 YELAPGTRCTVIGWGK-REDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVC 827
GT CTV GWG T S + + +PI++ CN +T M C
Sbjct: 108 SCAPAGTMCTVSGWGNTMSSTADSNK---LQCLNIPILSYSDCNNSYPGM---ITNAMFC 161
Query: 828 AGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYVTW 887
AGY EGGKD+CQGDSGGP++C + G+VSWG CA P PGVYA V + W
Sbjct: 162 AGYLEGGKDSCQGDSGGPVVC-------NGELQGVVSWGYGCAEPGNPGVYAKVCIFNDW 214
Query: 888 IQDIMDKY 895
+ M Y
Sbjct: 215 LTSTMASY 222
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 274 bits (703), Expect = 3e-86
Identities = 77/249 (30%), Positives = 123/249 (49%), Gaps = 26/249 (10%)
Query: 649 IIGGFESNPGDWPFLAAL-LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQ 707
IIGG E P P++A+L G C GVL+ +WVLTAAHC+ + + +
Sbjct: 1 IIGGREVIPHSRPYMASLQRNG---SHLCGGVLVHPKWVLTAAHCLAQ----RMAQLRLV 53
Query: 708 LGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPP 767
LG+ +S G F ++ H +Y +ND+AL QL KVK + + P+ LP
Sbjct: 54 LGLHTLDSP---GLTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLALPSK 110
Query: 768 NYELAPGTRCTVIGWGK-REDTRVSEYETAVNEVEVPIITRDICNK--WLNNRELNVTLG 824
+A GTRC++ GWG + R+S + E+++ ++ +CN + N ++
Sbjct: 111 RQVVAAGTRCSMAGWGLTHQGGRLSRV---LRELDLQVLDTRMCNNSRFWNGS---LSPS 164
Query: 825 MVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIK-CAHPHLPGVYAYVPK 883
MVC + C+GDSGGPL+C + + G++S+ + C P V V
Sbjct: 165 MVCLAADSKDQAPCKGDSGGPLVCG-----KGRVLAGVLSFSSRVCTDIFKPPVATAVAP 219
Query: 884 YVTWIQDIM 892
YV+WI+ +
Sbjct: 220 YVSWIRKVT 228
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 272 bits (697), Expect = 2e-85
Identities = 77/255 (30%), Positives = 110/255 (43%), Gaps = 35/255 (13%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
I+GG++ P+ A++ + C GVLI WV+TAAHC N + V L
Sbjct: 1 IVGGYKCEKNSQPWQVAVINE----YLCGGVLIDPSWVITAAHCYSN-------NYQVLL 49
Query: 709 GVTRRNSYAFFGTRFKVRGVFAHSQYN----------IGAQHDNDIALFQLKQKVKFNDH 758
G F R VR F H Y H ND+ L L +
Sbjct: 50 GRNNLFKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGG 109
Query: 759 LLPVCLPPPNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRE 818
+ + LP G+ C GWG + + + V + +++ + C + +
Sbjct: 110 VKVIDLPTKEP--KVGSTCLASGWGSTNPSEMV-VSHDLQCVNIHLLSNEKCIETYKD-- 164
Query: 819 LNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGI-KCAHPHLPGV 877
NVT M+CAG EGGKD C GDSGGPL+C + GI S G CA P P +
Sbjct: 165 -NVTDVMLCAGEMEGGKDTCAGDSGGPLIC-------DGVLQGITSGGATPCAKPKTPAI 216
Query: 878 YAYVPKYVTWIQDIM 892
YA + K+ +WI+ +M
Sbjct: 217 YAKLIKFTSWIKKVM 231
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen;
HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A
3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Length = 224
Score = 271 bits (695), Expect = 3e-85
Identities = 69/245 (28%), Positives = 97/245 (39%), Gaps = 25/245 (10%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
++GG + G++PF+ L C G L + VLTAAHCV N T
Sbjct: 1 VVGGTRAAQGEFPFMVRL------SMGCGGALYAQDIVLTAAHCVSGSG--NNTSITATG 52
Query: 709 GVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPN 768
GV S + + + V + + D AL +L Q + P
Sbjct: 53 GVVDLQSSS--AVKVRSTKVLQAPGFT-KETYGKDWALIKLAQPINQ-----PTLKIATT 104
Query: 769 YELAPGTRCTVIGWGK-REDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVC 827
TV GWG RE Y + + VP ++ C + V M+C
Sbjct: 105 -TAYNQGTFTVAGWGANREGGSQQRY---LLKANVPFVSDAACRSSSSFIL--VANEMIC 158
Query: 828 AGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYVTW 887
AGY +D CQGDSGGP+ + + + +W GIVSWG CA GVY V + +
Sbjct: 159 AGYDTKQEDTCQGDSGGPMFRKDNAD--EWVQVGIVSWGEGCARKGKYGVYTEVSTFASA 216
Query: 888 IQDIM 892
I
Sbjct: 217 IASAA 221
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine
proteinase, C-terminal peptidase; 2.35A {Bos taurus}
SCOP: b.47.1.2
Length = 251
Score = 271 bits (695), Expect = 5e-85
Identities = 82/268 (30%), Positives = 117/268 (43%), Gaps = 27/268 (10%)
Query: 633 CGTRRHLHNNFKARKRIIGGFESNPGDWPFLAAL--LGGPEFVFYCAGVLISDQWVLTAA 690
CG R++GG ++ P WP+ +L L + C G LI+ VLTAA
Sbjct: 1 CGAPIF---QPNLSARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAA 57
Query: 691 HCVGNLTGLNIDEWTVQLGVTRRNSYAFFGT-RFKVRGVFAHSQYNIGAQHDNDIALFQL 749
HC+ N + V LG G+ V +F H ++N NDIAL +L
Sbjct: 58 HCISNTL-----TYRVALGKNNLEVEDEAGSLYVGVDTIFVHEKWN-SFLVRNDIALIKL 111
Query: 750 KQKVKFNDHLLPVCLPPPNYELAPGTRCTVIGWGK-REDTRVSEYETAVNEVEVPIITRD 808
+ V+ D + CLP L C V GWG+ + ++ + + P++
Sbjct: 112 AETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAE---LQQGLQPVVDYA 168
Query: 809 ICNK--WLNNRELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWG 866
C++ W V MVCAG +G AC GDSGGPL C++ QW V GIVS+G
Sbjct: 169 TCSQRDWWGTT---VKETMVCAGG-DGVISACNGDSGGPLNCQAD---GQWDVRGIVSFG 221
Query: 867 I--KCAHPHLPGVYAYVPKYVTWIQDIM 892
C P V+ V Y+ WI +
Sbjct: 222 SGLSCNTFKKPTVFTRVSAYIDWINQKL 249
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 270 bits (693), Expect = 5e-85
Identities = 72/246 (29%), Positives = 116/246 (47%), Gaps = 27/246 (10%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
II G + +P P+ AAL+ E +C+GVL+ QWVL+AAHC N +T+ L
Sbjct: 1 IINGEDCSPHSQPWQAALVMENEL--FCSGVLVHPQWVLSAAHCFQN-------SYTIGL 51
Query: 709 GV-TRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPP 767
G+ + + H +YN ND+ L +L + V +D + + +
Sbjct: 52 GLHSLEADQEPGSQMVEASLSVRHPEYN-RPLLANDLMLIKLDESVSESDTIRSISIA-- 108
Query: 768 NYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVC 827
+ G C V GWG + R+ + V V +++ ++C+K + M C
Sbjct: 109 SQCPTAGNSCLVSGWGLLANGRMPTV---LQCVNVSVVSEEVCSKLYDPL---YHPSMFC 162
Query: 828 AGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGI-KCAHPHLPGVYAYVPKYVT 886
AG + KD+C GDSGGPL+C ++ G+VS+G C +PGVY + K+
Sbjct: 163 AGGGQDQKDSCNGDSGGPLIC-------NGYLQGLVSFGKAPCGQVGVPGVYTNLCKFTE 215
Query: 887 WIQDIM 892
WI+ +
Sbjct: 216 WIEKTV 221
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET:
NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Length = 237
Score = 270 bits (692), Expect = 9e-85
Identities = 77/255 (30%), Positives = 113/255 (44%), Gaps = 33/255 (12%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
++GGF P+ A+ E + C GVL+ WVLTAAHC D++ V L
Sbjct: 1 VVGGFNCEKNSQPWQVAVYYQKEHI--CGGVLLDRNWVLTAAHCYV-------DQYEVWL 51
Query: 709 GVTRRNSYAFFGTRFKVRGVFAHSQYN----------IGAQHDNDIALFQLKQKVKFNDH 758
G + V F H +N GA +D+ L +L + D
Sbjct: 52 GKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDV 111
Query: 759 LLPVCLPPPNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRE 818
+ P+ LP E PG++C GWG TR + V + ++ + C K +
Sbjct: 112 VKPIALPTK--EPKPGSKCLASGWGSITPTRWQ-KPDDLQCVFITLLPNENCAKVYLQK- 167
Query: 819 LNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWG-IKCAHPHLPGV 877
VT M+CAG GGKD C+ DSGGPL+C + G S+G + C P +P +
Sbjct: 168 --VTDVMLCAGEMGGGKDTCRDDSGGPLIC-------DGILQGTTSYGPVPCGKPGVPAI 218
Query: 878 YAYVPKYVTWIQDIM 892
Y + K+ +WI+D M
Sbjct: 219 YTNLIKFNSWIKDTM 233
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes,
fibrinogen binding, glycosylati hydrolase; 1.43A
{Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A*
Length = 234
Score = 269 bits (691), Expect = 1e-84
Identities = 75/245 (30%), Positives = 108/245 (44%), Gaps = 22/245 (8%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
+IGG E N + L A F +C+G LI+++WVLTAAHC + ++L
Sbjct: 1 VIGGDECNINEHRSLVAFFNSTGF--FCSGTLINEEWVLTAAHCDNT-------NFQMKL 51
Query: 709 GVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPN 768
GV + + F D DI L +L +V ++H++P+ LP
Sbjct: 52 GVHSKKVLNEDEQTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVPLSLPSSP 111
Query: 769 YELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVCA 828
+ G+ C ++GWG +V+ Y + ++ +C +CA
Sbjct: 112 P--SVGSVCHIMGWGSITPIKVT-YPDVPYCAYINLLDDAVCQAGYPEL--LTEYRTLCA 166
Query: 829 GYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIK-CAHPHLPGVYAYVPKYVTW 887
G EGGKD C GDSGGPL+C GIVS+G C PGVY V Y W
Sbjct: 167 GILEGGKDTCGGDSGGPLIC-------NGQFQGIVSFGAHPCGQGLKPGVYTKVFDYNHW 219
Query: 888 IQDIM 892
IQ I+
Sbjct: 220 IQSII 224
>2asu_B Hepatocyte growth factor-like protein; serine proteinase,
beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Length = 234
Score = 268 bits (687), Expect = 5e-84
Identities = 68/248 (27%), Positives = 111/248 (44%), Gaps = 27/248 (10%)
Query: 649 IIGGFESNPGDWPFLAAL--LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTV 706
++GG +PG+ P+ +L G +C G L+ +QW+LTA C + + + + V
Sbjct: 1 VVGG---HPGNSPWTVSLRNRQG---QHFCGGSLVKEQWILTARQCFSS-CHMPLTGYEV 53
Query: 707 QLGVTRRNSYAFFGT--RFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCL 764
LG +N + R V + + + L +L++ V N + +CL
Sbjct: 54 WLGTLFQNPQHGEPSLQRVPVAKMVCG-------PSGSQLVLLKLERSVTLNQRVALICL 106
Query: 765 PPPNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLG 824
PP Y + PGT+C + GWG +T+ + +T +N + +I+ CN R V
Sbjct: 107 PPEWYVVPPGTKCEIAGWG---ETKGTGNDTVLNVALLNVISNQECNIKHRGR---VRES 160
Query: 825 MVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKY 884
+C AC+GD GGPL C + W + GI+ CA P V+ V +
Sbjct: 161 EMCTEGLLAPVGACEGDYGGPLACFTH---NSWVLEGIIIPNRVCARSRWPAVFTRVSVF 217
Query: 885 VTWIQDIM 892
V WI +M
Sbjct: 218 VDWIHKVM 225
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 268 bits (687), Expect = 6e-84
Identities = 67/256 (26%), Positives = 104/256 (40%), Gaps = 33/256 (12%)
Query: 648 RIIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQ 707
+ P+ A+ ++ C GVL+ WVLTAAHC D++ V
Sbjct: 3 PPVQSQVDCENSQPWHVAVYRFNKY--QCGGVLLDRNWVLTAAHCYN-------DKYQVW 53
Query: 708 LGVTRRNSYAFFGTRFKVRGVFAHSQYNI----------GAQHDNDIALFQLKQKVKFND 757
LG V H +N+ + ND+ L +L + D
Sbjct: 54 LGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITD 113
Query: 758 HLLPVCLPPPNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNR 817
+ P+ LP G+ C GWG + + + V + ++ + C+K +
Sbjct: 114 VVKPITLPTEEP--KLGSTCLASGWGSTTPIKFKYPDD-LQCVNLKLLPNEDCDKAHEMK 170
Query: 818 ELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIK-CAHPHLPG 876
VT M+CAG +GG C+ DSGGPL+C + GI SWG + C P P
Sbjct: 171 ---VTDAMLCAGEMDGGSYTCEHDSGGPLIC-------DGILQGITSWGPEPCGEPTEPS 220
Query: 877 VYAYVPKYVTWIQDIM 892
VY + K+ +WI++ M
Sbjct: 221 VYTKLIKFSSWIRETM 236
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 267 bits (686), Expect = 7e-84
Identities = 69/250 (27%), Positives = 104/250 (41%), Gaps = 19/250 (7%)
Query: 649 IIGGFESNPGDWPFLAAL-LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQ 707
+IGG ++PG++P+ + + C L+S L+A+HCV G+ + V
Sbjct: 1 VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCV---DGVLPNNIRVI 57
Query: 708 LGVTRRNSYAFFGTRFKVRGVFAHSQYNIG-AQHDNDIALFQLKQKVKFNDHLLPVCLPP 766
G+ ++ S V H Y G A + NDIA+ L + ++ LP
Sbjct: 58 AGLWQQ-SDTSGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPA 116
Query: 767 PNYELAPGTRCTVIGWGK-REDTRVSEYETAVNEVEVPIITRDICNKWL-NNRELNVTLG 824
N GT C + GWG+ + + + + +P+IT C + N+
Sbjct: 117 NNNNDYAGTTCVISGWGRTDGTNNLPDI---LQKSSIPVITTAQCTAAMVGVGGANIWDN 173
Query: 825 MVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSW----GIKCAHPHLPGVYAY 880
+C P G AC GDSGGPL C V G+ SW G+ P P VY
Sbjct: 174 HICVQDPAGNTGACNGDSGGPLNCPDG----GTRVVGVTSWVVSSGLGACLPDYPSVYTR 229
Query: 881 VPKYVTWIQD 890
V Y+ WI D
Sbjct: 230 VSAYLGWIGD 239
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC
MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB:
1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Length = 227
Score = 267 bits (685), Expect = 9e-84
Identities = 77/251 (30%), Positives = 109/251 (43%), Gaps = 28/251 (11%)
Query: 649 IIGGFESNPGDWPFLAAL-LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQ 707
IIGG E+ P P++A L + + + C G LI D +VLTAAHC G+ V
Sbjct: 1 IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHCWGS-------SINVT 53
Query: 708 LGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPP 767
LG V+ H YN NDI L QL++K K + P+ LP
Sbjct: 54 LGAHNIKEQEPTQQFIPVKRPIPHPAYN-PKNFSNDIMLLQLERKAKRTRAVQPLRLPSN 112
Query: 768 NYELAPGTRCTVIGWGKREDTRVSEYETAVN---EVEVPIITRDICNKWLNNRELNVTLG 824
++ PG C+V GWG + + + EV++ + C L + +
Sbjct: 113 KAQVKPGQTCSVAGWG-----QTAPLGKHSHTLQEVKMTVQEDRKCESDLRHY--YDSTI 165
Query: 825 MVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKY 884
+C G PE K + +GDSGGPL+C GIVS+G P P V +
Sbjct: 166 ELCVGDPEIKKTSFKGDSGGPLVC-------NKVAQGIVSYGRNNGMP--PRACTKVSSF 216
Query: 885 VTWIQDIMDKY 895
V WI+ M +Y
Sbjct: 217 VHWIKKTMKRY 227
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG;
2.40A {Bos taurus} SCOP: b.47.1.2
Length = 227
Score = 267 bits (684), Expect = 1e-83
Identities = 77/249 (30%), Positives = 109/249 (43%), Gaps = 25/249 (10%)
Query: 649 IIGGFESNPGDWPFLAAL-LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQ 707
IIGG E+ P P++A L C G L+ + +VLTAAHC+G+ V
Sbjct: 1 IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLGS-------SINVT 53
Query: 708 LGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPP 767
LG VR H YN NDI L +L +K D + P+ LP
Sbjct: 54 LGAHNIMERERTQQVIPVRRPIPHPDYN-DETLANDIMLLKLTRKADITDKVSPINLPRS 112
Query: 768 NYELAPGTRCTVIGWGKREDTRVSEYETAV-NEVEVPIITRDICNKWLNNRELNVTLGMV 826
E+ PG C+V GWG+ V+ T EV++ + + + C N + +
Sbjct: 113 LAEVKPGMMCSVAGWGR---LGVNMPSTDKLQEVDLEVQSEEKCIARFKNY---IPFTQI 166
Query: 827 CAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYVT 886
CAG P K++ GDSGGPL+C GIVS+G P VY + +++
Sbjct: 167 CAGDPSKRKNSFSGDSGGPLVC-------NGVAQGIVSYGRNDGTT--PDVYTRISSFLS 217
Query: 887 WIQDIMDKY 895
WI M +Y
Sbjct: 218 WIHSTMRRY 226
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 267 bits (684), Expect = 1e-83
Identities = 75/246 (30%), Positives = 106/246 (43%), Gaps = 27/246 (10%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
+IGG E N + FLA + C G LI+ +WVLTA HC + L
Sbjct: 1 VIGGDECNINEHRFLALVYAN---GSLCGGTLINQEWVLTARHCDRG-------NMRIYL 50
Query: 709 GV-TRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPP 767
G+ + RF F + N D DI L +L + V+ + H+ P+ LP
Sbjct: 51 GMHNLKVLNKDALRRFPKEKYFCLNTRN-DTIWDKDIMLIRLNRPVRNSAHIAPLSLPSN 109
Query: 768 NYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVC 827
+ G+ C ++GWG + + + I+ +C + +C
Sbjct: 110 --PPSVGSVCRIMGWGTITSPNAT-LPDVPHCANINILDYAVCQAAYKG----LAATTLC 162
Query: 828 AGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIK-CAHPHLPGVYAYVPKYVT 886
AG EGGKD C+GDSGGPL+C GI+S G CA P PG+Y V Y
Sbjct: 163 AGILEGGKDTCKGDSGGPLIC-------NGQFQGILSVGGNPCAQPRKPGIYTKVFDYTD 215
Query: 887 WIQDIM 892
WIQ I+
Sbjct: 216 WIQSII 221
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Length = 234
Score = 266 bits (683), Expect = 2e-83
Identities = 86/249 (34%), Positives = 119/249 (47%), Gaps = 24/249 (9%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
IIGG E P P++ L + + CAG LI+ WVLTAAHC N V L
Sbjct: 1 IIGGNEVTPHSRPYMVLLSLDRKTI--CAGALIAKDWVLTAAHCNLN------KRSQVIL 52
Query: 709 GVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPN 768
G V+ F + Y+ A + D+ L QL +K K N ++ + LP
Sbjct: 53 GAHSITREEPTKQIMLVKKEFPYPCYD-PATREGDLKLLQLTEKAKINKYVTILHLPKKG 111
Query: 769 YELAPGTRCTVIGWGKREDTRVSEYETAV-NEVEVPIITRDICNK-WLNNRELNVTLGMV 826
++ PGT C V GWG+ T S + EVE+ II R +CN N + + MV
Sbjct: 112 DDVKPGTMCQVAGWGR---THNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMV 168
Query: 827 CAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIK--CAHPHLPGVYAYV-PK 883
CAG GG+D+C GDSG PLLC + G+ S+G++ C P PGVY + K
Sbjct: 169 CAGSLRGGRDSCNGDSGSPLLC-------EGVFRGVTSFGLENKCGDPRGPGVYILLSKK 221
Query: 884 YVTWIQDIM 892
++ WI +
Sbjct: 222 HLNWIIMTI 230
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 266 bits (683), Expect = 2e-83
Identities = 56/249 (22%), Positives = 99/249 (39%), Gaps = 26/249 (10%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
IIGG +S+ P+ +L + +C G +++ +V+TAA CV G + ++
Sbjct: 1 IIGGKKSDITKEPWAVGVLVDEKP--FCGGSILTANFVITAAQCV---DGTKPSDISIHY 55
Query: 709 GVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHL-LPVCLPPP 767
G + R + + +Y+ N+ A+ + + +K +D + LP
Sbjct: 56 GSSYRTT----KGTSVMAKKIYIVRYH-PLTMQNNYAVIETEMPIKLDDKTTKKIELPSL 110
Query: 768 NYELAPGTRCTVIGWGKREDTRVSEYETAVN--EVEVPIITRDICNKWLNNRELN--VTL 823
Y+ P T V GWG T E + + E ++ R C + E + +
Sbjct: 111 LYDPEPDTSVLVSGWGS---TNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYIYD 167
Query: 824 GMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPK 883
G+ CAG GD+G P + + G+ S+ P V+ V
Sbjct: 168 GVFCAGGEYDETYIGYGDAGDPAVQ-------NGTLVGVASYISSMP-SEFPSVFLRVGY 219
Query: 884 YVTWIQDIM 892
YV I+DI+
Sbjct: 220 YVLDIKDII 228
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease,
catalytic intermediate, atomic resolution,
hydrolase-hydrolase inhibitor complex; 0.94A {Sus
scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B*
1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A*
1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A*
1esa_A 1esb_A* 1est_A* ...
Length = 240
Score = 266 bits (682), Expect = 3e-83
Identities = 73/252 (28%), Positives = 114/252 (45%), Gaps = 23/252 (9%)
Query: 649 IIGGFESNPGDWPFLAAL--LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTV 706
++GG E+ WP +L G + C G LI WV+TAAHCV + V
Sbjct: 1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDREL-----TFRV 55
Query: 707 QLGVTRRNSYAFFGTRFKVRGVFAHSQYNI-GAQHDNDIALFQLKQKVKFNDHLLPVCLP 765
+G N V+ + H +N DIAL +L Q V N ++ LP
Sbjct: 56 VVGEHNLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLP 115
Query: 766 PPNYELAPGTRCTVIGWGK-REDTRVSEYETAVNEVEVPIITRDICNK--WLNNRELNVT 822
LA + C + GWG R + ++++ + + +P + IC+ + + V
Sbjct: 116 RAGTILANNSPCYITGWGLTRTNGQLAQT---LQQAYLPTVDYAICSSSSYWGST---VK 169
Query: 823 LGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIK--CAHPHLPGVYAY 880
MVCAG +G + CQGDSGGPL C + Q+ V G+ S+ + C P V+
Sbjct: 170 NSMVCAGG-DGVRSGCQGDSGGPLHCLVN---GQYAVHGVTSFVSRLGCNVTRKPTVFTR 225
Query: 881 VPKYVTWIQDIM 892
V Y++WI +++
Sbjct: 226 VSAYISWINNVI 237
>2xw9_A Complement factor D; immune system, hydrolase, serine protease,
alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB:
2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A
1fdp_A 2xwa_A 1dst_A 4d9q_A
Length = 228
Score = 265 bits (680), Expect = 4e-83
Identities = 69/248 (27%), Positives = 115/248 (46%), Gaps = 25/248 (10%)
Query: 649 IIGGFESNPGDWPFLAAL-LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQ 707
I+GG E+ P++A++ L G C GVL+++QWVL+AAHC+ + + V
Sbjct: 1 ILGGREAEAHARPYMASVQLNG---AHLCGGVLVAEQWVLSAAHCLEDAAD---GKVQVL 54
Query: 708 LGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPP 767
LG + + V H D+D+ L QL +K + P+
Sbjct: 55 LGAHSLSQPEPSKRLYDVLRAVPHPDSQ-PDTIDHDLLLLQLSEKATLGPAVRPLPWQRV 113
Query: 768 NYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNK--WLNNRELNVTLGM 825
+ ++APGT C V GWG ++ V +P++ R CN+ + +T +
Sbjct: 114 DRDVAPGTLCDVAGWGIVNHA--GRRPDSLQHVLLPVLDRATCNRRTHHDGA---ITERL 168
Query: 826 VCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIK-CAHPHLPGVYAYVPKY 884
+CA +D+C+GD+GGPL+C + G+V+ G + C + PG+Y V Y
Sbjct: 169 MCAE--SNRRDSCKGDAGGPLVC-------GGVLEGVVTSGSRVCGNRKKPGIYTRVASY 219
Query: 885 VTWIQDIM 892
WI ++
Sbjct: 220 AAWIDSVL 227
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 265 bits (681), Expect = 4e-83
Identities = 75/252 (29%), Positives = 118/252 (46%), Gaps = 22/252 (8%)
Query: 649 IIGGFESNPGDWPFLAAL--LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTV 706
++GG ++ P WP+ +L ++ C G L+ WVLTAAHC+ + + V
Sbjct: 1 VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISSSR-----TYRV 55
Query: 707 QLGVTRRNSYAFFGTRFKVRGVFAHSQYN-IGAQHDNDIALFQLKQKVKFNDHLLPVCLP 765
LG ++ KV + H +N + NDIAL +L V D + CLP
Sbjct: 56 VLGRHSLSTNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLP 115
Query: 766 PPNYELAPGTRCTVIGWGK-REDTRVSEYETAVNEVEVPIITRDICNK--WLNNRELNVT 822
L C V GWG+ + + + + + ++ ++ C+K W + V
Sbjct: 116 AAGTILPNNYVCYVTGWGRLQTNGASPDI---LQQGQLLVVDYATCSKPGWWGST---VK 169
Query: 823 LGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIK--CAHPHLPGVYAY 880
M+CAG +G +C GDSGGPL C+ ++ QW V GIVS+G C + H P V+
Sbjct: 170 TNMICAGG-DGIISSCNGDSGGPLNCQGANG--QWQVHGIVSFGSSLGCNYYHKPSVFTR 226
Query: 881 VPKYVTWIQDIM 892
V Y+ WI ++
Sbjct: 227 VSNYIDWINSVI 238
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 265 bits (680), Expect = 4e-83
Identities = 86/248 (34%), Positives = 116/248 (46%), Gaps = 26/248 (10%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
I+ G E P P+ AAL G C GVL+ D+WVLTAAHC +++V+L
Sbjct: 1 ILEGRECIPHSQPWQAALFQGERL--ICGGVLVGDRWVLTAAHCKKQ-------KYSVRL 51
Query: 709 GVTRRNSYAFFGTRFKVRGVFAHSQYN--IGAQHDNDIALFQLKQKVKFNDHLLPVCLPP 766
G S +V H YN H +DI L +L+ D + PV L
Sbjct: 52 GDHSLQSRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQL-- 109
Query: 767 PNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMV 826
N G +C + GWG + + + +N EV I +++ C + + +T GMV
Sbjct: 110 ANLCPKVGQKCIISGWGTVTSPQEN-FPNTLNCAEVKIYSQNKCERAYPGK---ITEGMV 165
Query: 827 CAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGI-KCAHPHLPGVYAYVPKYV 885
CAG G D CQGDSGGPL+C + GI SWG C P PGVY + +Y
Sbjct: 166 CAGS-SNGADTCQGDSGGPLVC-------DGMLQGITSWGSDPCGKPEKPGVYTKICRYT 217
Query: 886 TWIQDIMD 893
TWI+ MD
Sbjct: 218 TWIKKTMD 225
>2zch_P Prostate-specific antigen; human PSA, kallikrein related
peptidases, antibodies, prostate cancer, glycoprotein,
hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens}
PDB: 2zck_P* 2zcl_P* 3qum_P*
Length = 237
Score = 265 bits (680), Expect = 5e-83
Identities = 79/255 (30%), Positives = 111/255 (43%), Gaps = 33/255 (12%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
I+GG+E P+ + C GVL+ QWVLTAAHC+ N + + L
Sbjct: 1 IVGGWECEKHSQPWQVLVASRGRA--VCGGVLVHPQWVLTAAHCIRN-------KSVILL 51
Query: 709 GVTRRNSYAFFGTRFKVRGVFAHSQYN----------IGAQHDNDIALFQLKQKVKFNDH 758
G G F+V F H Y+ G +D+ L +L + + D
Sbjct: 52 GRHSLFHPEDTGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDA 111
Query: 759 LLPVCLPPPNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRE 818
+ + LP A GT C GWG E + V++ +I+ D+C + +
Sbjct: 112 VKVMDLPTQEP--ALGTTCYASGWGSIEPEEFL-TPKKLQCVDLHVISNDVCAQVHPQK- 167
Query: 819 LNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIK-CAHPHLPGV 877
VT M+CAG GGK C GDSGGPL+C + GI SWG + CA P P +
Sbjct: 168 --VTKFMLCAGRWTGGKSTCSGDSGGPLVC-------NGVLQGITSWGSEPCALPERPSL 218
Query: 878 YAYVPKYVTWIQDIM 892
Y V Y WI+D +
Sbjct: 219 YTKVVHYRKWIKDTI 233
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Length = 236
Score = 265 bits (679), Expect = 8e-83
Identities = 77/252 (30%), Positives = 109/252 (43%), Gaps = 24/252 (9%)
Query: 649 IIGGFESNPGDWPFLAAL--LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTV 706
++GG + P WP+ +L G + C G LI WV+TAAHCV + W V
Sbjct: 1 VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVDSAR-----TWRV 55
Query: 707 QLGVTRRNSYAFFGTRFKVRGVFAHSQYNI-GAQHDNDIALFQLKQKVKFNDHLLPVCLP 765
LG N+ V VF HS +N DIAL +L + N + LP
Sbjct: 56 VLGEHNLNTNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALP 115
Query: 766 PPNYELAPGTRCTVIGWGK-REDTRVSEYETAVNEVEVPIITRDICNK--WLNNRELNVT 822
P N L C + GWGK +S+ + + +P + C+ W + V
Sbjct: 116 PSNQILPNNNPCYITGWGKTSTGGPLSDS---LKQAWLPSVDHATCSSSGWWGST---VK 169
Query: 823 LGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSW--GIKCAHPHLPGVYAY 880
MVCAG G C GDSGGPL C+ + ++V G+ S+ C P V+
Sbjct: 170 TTMVCAG--GGANSGCNGDSGGPLNCQVN---GSYYVHGVTSFVSSSGCNASKKPTVFTR 224
Query: 881 VPKYVTWIQDIM 892
V Y++W+ IM
Sbjct: 225 VSAYISWMNGIM 236
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation,
hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG;
2.30A {Homo sapiens} PDB: 2psy_A*
Length = 227
Score = 264 bits (677), Expect = 1e-82
Identities = 75/250 (30%), Positives = 122/250 (48%), Gaps = 25/250 (10%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
II G + + P+ AALL P YC VL+ QW+LTAAHC + V+L
Sbjct: 1 IINGSDCDMHTQPWQAALLLRPNQ-LYCGAVLVHPQWLLTAAHCRK-------KVFRVRL 52
Query: 709 GV-TRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPP 767
G + Y F+ H Y+ H ND+ L +L ++++ + P+ +
Sbjct: 53 GHYSLSPVYESGQQMFQGVKSIPHPGYS-HPGHSNDLMLIKLNRRIRPTKDVRPINV--S 109
Query: 768 NYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVC 827
++ + GT+C V GWG + +V + + + + ++++ C + + M C
Sbjct: 110 SHCPSAGTKCLVSGWGTTKSPQVH-FPKVLQCLNISVLSQKRCEDAYPRQ---IDDTMFC 165
Query: 828 AGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWG-IKCAHPHLPGVYAYVPKYVT 886
AG + G+D+CQGDSGGP++C + G+VSWG CA P+ PGVY + K+
Sbjct: 166 AGD-KAGRDSCQGDSGGPVVC-------NGSLQGLVSWGDYPCARPNRPGVYTNLCKFTK 217
Query: 887 WIQDIMDKYS 896
WIQ+ + S
Sbjct: 218 WIQETIQANS 227
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A,
LUNG; chymotrypsin homology, hormone/growth factor
complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Length = 240
Score = 263 bits (674), Expect = 4e-82
Identities = 61/248 (24%), Positives = 106/248 (42%), Gaps = 20/248 (8%)
Query: 649 IIGGFESNPGDWPFLAAL-LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQ 707
++ G + + ++ +L C G LI + WVLTA C ++ ++
Sbjct: 1 VVNGIPT-RTNIGWMVSLRYRN---KHICGGSLIKESWVLTARQCF---PSRDLKDYEAW 53
Query: 708 LGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPP 767
LG+ + K + V SQ G +D+ L +L + +D + + LP
Sbjct: 54 LGIHDVHGR----GDEKCKQVLNVSQLVYG-PEGSDLVLMKLARPAVLDDFVSTIDLPNY 108
Query: 768 NYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVC 827
+ T C+V GWG T + Y+ + + I+ + C++ + + +C
Sbjct: 109 GSTIPEKTSCSVYGWGY---TGLINYDGLLRVAHLYIMGNEKCSQHHRGKV-TLNESEIC 164
Query: 828 AGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYVTW 887
AG + G C+GD GGPL+C + V G++ G CA P+ PG++ V Y W
Sbjct: 165 AGAEKIGSGPCEGDYGGPLVCEQH---KMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKW 221
Query: 888 IQDIMDKY 895
I I+ Y
Sbjct: 222 IHKIILTY 229
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG;
1.70A {Homo sapiens}
Length = 238
Score = 262 bits (672), Expect = 9e-82
Identities = 81/260 (31%), Positives = 113/260 (43%), Gaps = 34/260 (13%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
I+GG+E P+ AAL F C G+L+ QWVLTAAHC+ D + + L
Sbjct: 1 IVGGWECEQHSQPWQAALYHFSTF--QCGGILVHRQWVLTAAHCIS-------DNYQLWL 51
Query: 709 GVTRRNSYAFFGTRFKVRGVFAHSQYN----------IGAQHDNDIALFQLKQKV-KFND 757
G V F H +N + +D+ L +L + D
Sbjct: 52 GRHNLFDDENTAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITD 111
Query: 758 HLLPVCLPPPNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNR 817
+ V LP G+ C GWG E S + + V++ I+ D C K +
Sbjct: 112 AVKVVELPTEEP--EVGSTCLASGWGSIEPENFS-FPDDLQCVDLKILPNDECKKAHVQK 168
Query: 818 ELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWG-IKCAHPHLPG 876
VT M+C G+ EGGKD C GDSGGPL+C + G+ SWG + C P+ P
Sbjct: 169 ---VTDFMLCVGHLEGGKDTCVGDSGGPLMC-------DGVLQGVTSWGYVPCGTPNKPS 218
Query: 877 VYAYVPKYVTWIQDIMDKYS 896
V V YV WI+D + + S
Sbjct: 219 VAVRVLSYVKWIEDTIAENS 238
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase;
1.42A {Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 262 bits (671), Expect = 1e-81
Identities = 66/259 (25%), Positives = 107/259 (41%), Gaps = 33/259 (12%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
IIGG+E P+ A+ F C GVL+ QWVLTAAHC+ D++ + L
Sbjct: 1 IIGGWECEKHSKPWQVAVYHQGHF--QCGGVLVHPQWVLTAAHCMS-------DDYQIWL 51
Query: 709 GVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQ----------HDNDIALFQLKQKVKFNDH 758
G + +V F Q+++ +D+ L +L Q + D
Sbjct: 52 GRHNLSKDEDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDA 111
Query: 759 LLPVCLPPPNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRE 818
+ + LP G+ C GWG + VE+ + + + C + +
Sbjct: 112 VKILDLPTQEP--KLGSTCYTSGWGLISTFTNR-GSGTLQCVELRLQSNEKCARAYPEK- 167
Query: 819 LNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGI-KCAHPHLPGV 877
+T ++CA + + C GDSGG L+C GI SWG +CA + V
Sbjct: 168 --MTEFVLCATHRDDSGSICLGDSGGALIC-------DGVFQGITSWGYSECADFNDNFV 218
Query: 878 YAYVPKYVTWIQDIMDKYS 896
+ V + WI++ ++K S
Sbjct: 219 FTKVMPHKKWIKETIEKNS 237
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus}
SCOP: b.47.1.2
Length = 224
Score = 260 bits (667), Expect = 3e-81
Identities = 85/248 (34%), Positives = 111/248 (44%), Gaps = 27/248 (10%)
Query: 649 IIGGFESNPGDWPFLAAL--LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTV 706
IIGG ES P P++A L + C G LIS Q+VLTAAHC G E TV
Sbjct: 1 IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKGR-------EITV 53
Query: 707 QLGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPP 766
LG + KV H YN + +DI L +L++KV+ + V LP
Sbjct: 54 ILGAHDVRKRESTQQKIKVEKQIIHESYN-SVPNLHDIMLLKLEKKVELTPAVNVVPLPS 112
Query: 767 PNYELAPGTRCTVIGWGKREDTRVSEYETAV-NEVEVPIITRDICNKWLNNRELNVTLGM 825
P+ + PG C GWGK T V + + EVE+ I+ C +
Sbjct: 113 PSDFIHPGAMCWAAGWGK---TGVRDPTSYTLREVELRIMDEKACVDYRY----YEYKFQ 165
Query: 826 VCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYV 885
VC G P + A GDSGGPLLC GIVS+G A P P ++ V YV
Sbjct: 166 VCVGSPTTLRAAFMGDSGGPLLC-------AGVAHGIVSYGHPDAKP--PAIFTRVSTYV 216
Query: 886 TWIQDIMD 893
WI +++
Sbjct: 217 PWINAVIN 224
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 259 bits (663), Expect = 1e-80
Identities = 63/249 (25%), Positives = 98/249 (39%), Gaps = 29/249 (11%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
I+GG ++ P +PFLA++ +C G LI ++V+TAA C + N TV L
Sbjct: 1 IVGGRKARPRQFPFLASIQNQGRH--FCGGALIHARFVMTAASCFQSQ---NPGVSTVVL 55
Query: 709 GVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPN 768
G + + + Y+ Q+ ND+ L QL ++ + + LP N
Sbjct: 56 GAYDLRRRERQSRQTFSISSMSENGYD-PQQNLNDLMLLQLDREANLTSSVTILPLPLQN 114
Query: 769 YELAPGTRCTVIGWGK-REDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVC 827
+ GTRC V GWG R R+S + V V + D C VC
Sbjct: 115 ATVEAGTRCQVAGWGSQRSGGRLSRF---PRFVNVTVTPEDQCRP-----------NNVC 160
Query: 828 AGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYVTW 887
G C GD G PL+C + G+ S+ + P + V + W
Sbjct: 161 TGVLTRRGGICNGDGGTPLVC-------EGLAHGVASFSLGPC-GRGPDFFTRVALFRDW 212
Query: 888 IQDIMDKYS 896
I +++
Sbjct: 213 IDGVLNNPG 221
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease,
zymogen; 2.50A {Mus musculus} PDB: 3g01_A
Length = 227
Score = 258 bits (661), Expect = 2e-80
Identities = 71/248 (28%), Positives = 103/248 (41%), Gaps = 27/248 (10%)
Query: 649 IIGGFESNPGDWPFLAAL--LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTV 706
IIGG E +P P++A L +C G L+ D++VLTAAHC G TV
Sbjct: 1 IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHCKG-------RSMTV 53
Query: 707 QLGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPP 766
LG + V H YN NDI L +L + K + P+ LP
Sbjct: 54 TLGAHNIKAKEETQQIIPVAKAIPHPDYN-PDDRSNDIMLLKLVRNAKRTRAVRPLNLPR 112
Query: 767 PNYELAPGTRCTVIGWGKREDTRVSEYETAV-NEVEVPIITRDICNK-WLNNRELNVTLG 824
N + PG C V GWGK +EV++ + +C + ++
Sbjct: 113 RNAHVKPGDECYVAGWGK---VTPDGEFPKTLHEVKLTVQKDQVCESQFQSSY---NRAN 166
Query: 825 MVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKY 884
+C G + + + DSGGPL+C + GIVS+G P V+ V +
Sbjct: 167 EICVGDSKIKGASFEEDSGGPLVC-------KRAAAGIVSYGQTDGSA--PQVFTRVLSF 217
Query: 885 VTWIQDIM 892
V+WI+ M
Sbjct: 218 VSWIKKTM 225
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A*
4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A*
2hvx_A* 3s0n_A* 2rdl_A
Length = 226
Score = 256 bits (656), Expect = 1e-79
Identities = 76/247 (30%), Positives = 107/247 (43%), Gaps = 27/247 (10%)
Query: 649 IIGGFESNPGDWPFLAAL--LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTV 706
IIGG E P P++A L + +C G LI +VLTAAHC G TV
Sbjct: 1 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGR-------SITV 53
Query: 707 QLGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPP 766
LG + +V F H +YN + +DI L +LK+K + + P
Sbjct: 54 TLGAHNITEEEDTWQKLEVIKQFRHPKYN-TSTLHHDIMLLKLKEKASLTLAVGTLPFPS 112
Query: 767 PNYELAPGTRCTVIGWGKREDTRVSEYETAV-NEVEVPIITRDICNKWLNNRELNVTLGM 825
+ PG C V GWG+ T V + + EV++ ++ C+ + +
Sbjct: 113 QFNFVPPGRMCRVAGWGR---TGVLKPGSDTLQEVKLRLMDPQACSHFRD----FDHNLQ 165
Query: 826 VCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYV 885
+C G P K A +GDSGGPLLC GIVS+G A P P V+ + Y
Sbjct: 166 LCVGNPRKTKSAFKGDSGGPLLC-------AGVAQGIVSYGRSDAKP--PAVFTRISHYR 216
Query: 886 TWIQDIM 892
WI I+
Sbjct: 217 PWINQIL 223
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 252 bits (645), Expect = 4e-78
Identities = 58/246 (23%), Positives = 96/246 (39%), Gaps = 22/246 (8%)
Query: 651 GGFESNPGDWPFLAAL-LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQLG 709
GG +++ P+ A+ E C G ++S +VLTAAHCV + +Q
Sbjct: 2 GGEKTDIKQVPWTVAVRTYPGEESLTCGGAILSQWFVLTAAHCV---FDQKPETIVIQYE 58
Query: 710 VTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFND-HLLPVCLPPPN 768
T G S Y +NDIA+ +L + +K + P LP
Sbjct: 59 STNLWEDP--GKSDPYVSHVYLSFYR-QETMENDIAILELSRPLKLDGLKSKPAKLPDIE 115
Query: 769 YELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVCA 828
+ G+ V G+G + + + ++ ++ D C ++L + CA
Sbjct: 116 FRPKTGSDVLVSGYGDGQTM--DPKDHDLKSAQLTVVDLDECRTKYGPIF--LSLQVFCA 171
Query: 829 GYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYVTWI 888
G GD+G P + Q + G+ ++ K P V+ V YV+WI
Sbjct: 172 QK--VGVSLESGDAGDPTVQ-------QDTLVGVAAYFPKRP-EGAPEVFTKVGSYVSWI 221
Query: 889 QDIMDK 894
QDI+ K
Sbjct: 222 QDIIKK 227
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS;
1.70A {Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 250 bits (642), Expect = 9e-78
Identities = 70/247 (28%), Positives = 108/247 (43%), Gaps = 26/247 (10%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
I+GG ++ G +P+ +L C ++ + VLTAAHCV L+ N++ V +
Sbjct: 1 IVGGKDAPVGKYPYQVSLRLS--GSHRCGASILDNNNVLTAAHCVDGLS--NLNRLKVHV 56
Query: 709 GVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPN 768
G + G + V + Y+ ND+AL L +KFND + P+ L +
Sbjct: 57 GTNYLSES---GDVYDVEDAVVNKNYD-DFLLRNDVALVHLTNPIKFNDLVQPIKLSTND 112
Query: 769 YELAPGTRCTVIGWGK-REDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVC 827
+L CT+ GWG R + E+E+ + + C + V +C
Sbjct: 113 EDL-ESNPCTLTGWGSTRLGGNTPNA---LQEIELIVHPQKQCERDQWR----VIDSHIC 164
Query: 828 AGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYVTW 887
+ G+ AC GDSGGPL+ GIVS+G CA P VY V +V+W
Sbjct: 165 T-LTKRGEGACHGDSGGPLVA-------NGAQIGIVSFGSPCALGE-PDVYTRVSSFVSW 215
Query: 888 IQDIMDK 894
I + K
Sbjct: 216 INANLKK 222
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 257 bits (658), Expect = 1e-77
Identities = 87/320 (27%), Positives = 133/320 (41%), Gaps = 39/320 (12%)
Query: 601 PYSPYNDSMLKLKACNDDDDYPQLELTCTNIQCGTRRHLHNNFKARK-------RIIGGF 653
S L+ C + + NIQ ++ + R+ G+
Sbjct: 64 KVPADYASYLQKALCGEFNGVRHFCCPSANIQHNSKVMSLFKDENFDCGNFLSQRVSNGY 123
Query: 654 ESNPGDWPFLAALL--GGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQLG-- 709
E P++A L E F C G +IS++++LTAAHCV GL D + ++LG
Sbjct: 124 EVKLSSRPWMALLRYQQFGESRFLCGGAMISERYILTAAHCV---HGLQNDLYEIRLGEH 180
Query: 710 ----------VTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHL 759
R+ A + H +Y+ +DIAL +L + V F H+
Sbjct: 181 RISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARH-IMHDIALLKLNRSVPFQKHI 239
Query: 760 LPVCLPPPNYELAP---GTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNN 816
P+CLP + + V GWG E+ S+ + + VP+ R C++
Sbjct: 240 KPICLPITDELKEKAEQISTYFVTGWGTTENGSSSDV---LLQANVPLQPRSACSQAYRR 296
Query: 817 RELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFE---QWFVGGIVSWG-IKCAHP 872
V L +C G +D+C+GDSGGPL + + E + GIVS G + C
Sbjct: 297 A---VPLSQLCVGG-GDLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQI 352
Query: 873 HLPGVYAYVPKYVTWIQDIM 892
LPG+Y V +YV WI D M
Sbjct: 353 SLPGLYTNVGEYVQWITDTM 372
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 250 bits (641), Expect = 1e-77
Identities = 71/249 (28%), Positives = 103/249 (41%), Gaps = 34/249 (13%)
Query: 649 IIGGFESNPGDWPFLAAL-LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQ 707
I+GG E+ P P++A+L + G +C G LI +VLTAAHC+ ++ V
Sbjct: 1 IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQ---RLVNVV 57
Query: 708 LGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPP 767
LG + F V VF + Y+ NDI L QL + + V LP
Sbjct: 58 LGAHNVRTQEPTQQHFSVAQVFLN-NYD-AENKLNDILLIQLSSPANLSASVATVQLPQQ 115
Query: 768 NYELAPGTRCTVIGWGKREDTRVSEYETAVN---EVEVPIITRDICNKWLNNRELNVTLG 824
+ + GT+C +GWG RV ++ E+ V ++T
Sbjct: 116 DQPVPHGTQCLAMGWG-----RVGAHDPPAQVLQELNVTVVTFFCRPH------------ 158
Query: 825 MVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIK-CAHPHLPGVYAYVPK 883
+C P C GDSGGPL+C + GI S+ I CA P + V
Sbjct: 159 NICTFVPRRKAGICFGDSGGPLIC-------DGIIQGIDSFVIWGCATRLFPDFFTRVAL 211
Query: 884 YVTWIQDIM 892
YV WI+ +
Sbjct: 212 YVDWIRSTL 220
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease;
1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Length = 240
Score = 249 bits (638), Expect = 6e-77
Identities = 65/251 (25%), Positives = 101/251 (40%), Gaps = 25/251 (9%)
Query: 652 GFESNPGDWPFLAAL--LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQLG 709
G ++ P W + +L F C G LI+ WV+TA HC+ + V LG
Sbjct: 2 GEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCISTSR-----TYQVVLG 56
Query: 710 VTRRNSYAFF--GTRFKVRGVFAHSQYN-IGAQHDNDIALFQLKQKVKFNDHLLPVCLPP 766
R+ +F H +N NDIAL +L + + D + LPP
Sbjct: 57 EYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPP 116
Query: 767 PNYELAPGTRCTVIGWGK-REDTRVSEYETAVNEVEVPIITRDICNK--WLNNRELNVTL 823
L C + GWG+ + + + + +P + + C++ W V
Sbjct: 117 AGDILPNEAPCYISGWGRLYTGGPLPDK---LQQALLPTVDYEHCSQWDWWGIT---VKK 170
Query: 824 GMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSW--GIKCAHPHLPGVYAYV 881
MVCAG + C GDSGGPL C ++ W V G+ S+ C P V+ V
Sbjct: 171 TMVCAGG--DTRSGCNGDSGGPLNCPAADG--SWQVHGVTSFVSAFGCNTIKKPTVFTRV 226
Query: 882 PKYVTWIQDIM 892
++ WI + +
Sbjct: 227 SAFIDWIDETI 237
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP:
b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A*
1hne_E 2rg3_A* 1b0f_A*
Length = 218
Score = 248 bits (635), Expect = 1e-76
Identities = 68/248 (27%), Positives = 105/248 (42%), Gaps = 35/248 (14%)
Query: 649 IIGGFESNPGDWPFLAAL--LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTV 706
I+GG + P WPF+ +L GG +C LI+ +V++AAHCV N+ N+ V
Sbjct: 1 IVGGRRARPHAWPFMVSLQLRGG----HFCGATLIAPNFVMSAAHCVANV---NVRAVRV 53
Query: 707 QLGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPP 766
LG + F V+ +F + Y+ NDI + QL N ++ LP
Sbjct: 54 VLGAHNLSRREPTRQVFAVQRIF-ENGYD-PVNLLNDIVILQLNGSATINANVQVAQLPA 111
Query: 767 PNYELAPGTRCTVIGWGK-REDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGM 825
L G +C +GWG + ++ + E+ V ++T +C +
Sbjct: 112 QGRRLGNGVQCLAMGWGLLGRNRGIASV---LQELNVTVVT-SLCRR-----------SN 156
Query: 826 VCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIK-CAHPHLPGVYAYVPKY 884
VC C GDSG PL+C + GI S+ CA P +A V ++
Sbjct: 157 VCTLVRGRQAGVCFGDSGSPLVC-------NGLIHGIASFVRGGCASGLYPDAFAPVAQF 209
Query: 885 VTWIQDIM 892
V WI I+
Sbjct: 210 VNWIDSII 217
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 249 bits (638), Expect = 2e-76
Identities = 59/286 (20%), Positives = 100/286 (34%), Gaps = 34/286 (11%)
Query: 615 CNDDDDYPQLELTCTNIQCGTRRHLHNNFKARKRIIGGFESNPGDWPFLAALLGGPEFVF 674
C+ Y L + QC + + D P+ L
Sbjct: 26 CSCAQGY---RLGEDHKQCVPH----DQCACGVLTSEKRAPDLQDLPWQVKLTNSEGK-D 77
Query: 675 YCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQY 734
+C GV+I + +VLT A C L TV+ R + K+ V H +Y
Sbjct: 78 FCGGVIIRENFVLTTAKCS-----LLHRNITVKTYFNRTSQDP---LMIKITHVHVHMRY 129
Query: 735 NIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPNY---ELAPGTRCTVIGWGKREDTRVS 791
+ +ND++L +L+ ++ LPVC P ++ L P TR + GW R T +
Sbjct: 130 D-ADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWA-RNGTDLG 187
Query: 792 EYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSS 851
++ V ++ + C + LN VT C A G +
Sbjct: 188 ---NSLTTRPVTLVEGEECGQVLNVT---VTTRTYCER---SSVAAMHWMDGSVVTREHR 238
Query: 852 HNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYVTWIQDIMDKYSY 897
WF+ G++ + V +Y W + IM+ + +
Sbjct: 239 ---GSWFLTGVLGSQ-PVGGQAHMVLVTKVSRYSLWFKQIMNAHHH 280
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 255 bits (652), Expect = 1e-75
Identities = 66/327 (20%), Positives = 117/327 (35%), Gaps = 69/327 (21%)
Query: 613 KACNDDDDYPQLELTCTNIQCGTRRHLHNNFKARKRIIGGFESNPGDWPFLAALLGGPEF 672
KA + ++ T+ CG + S+ P+ + +
Sbjct: 200 KALHQVFEHMLDVSKLTDTICGVG------------NMSANASDQERTPWHVTIKPKSQE 247
Query: 673 VFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHS 732
C G LISDQWVLTAAHC + + W V +G + G F +
Sbjct: 248 T--CRGALISDQWVLTAAHCFRDGN--DHSLWRVNVGDPKSQW----GKEFLIEKAVISP 299
Query: 733 QYNIGAQ--------HDNDIALFQLKQKVKFNDHLLPVCLPPPN-----YELAPGTRCTV 779
+++ A+ + +DIAL +L QKVK + H P+CLP G+ C
Sbjct: 300 GFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQGSTCRD 359
Query: 780 IGWGKREDTRVSEYETAVNEVEVPI-----ITRDICNKWLNNRELN----------VTLG 824
V + A+N ++ I + C + ++ + VT
Sbjct: 360 HENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQ 419
Query: 825 MVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGI----------------- 867
+C+G + + C+G+SGG + ++F G+VSWG+
Sbjct: 420 FLCSGT-QEDESPCKGESGGAVFLERRF---RFFQVGLVSWGLYNPCLGSADKNSRKRAP 475
Query: 868 KCAHPHLPGVYAYVPKYVTWIQDIMDK 894
+ P + + + W++ +
Sbjct: 476 RSKVPPPRDFHINLFRMQPWLRQHLGD 502
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 248 bits (634), Expect = 2e-75
Identities = 56/269 (20%), Positives = 94/269 (34%), Gaps = 27/269 (10%)
Query: 628 CTNIQCGTRRHLHNNFKARKRIIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVL 687
+ + H+ + D P+ L +C GV+I + +VL
Sbjct: 73 YRLGEDHKQCVPHDQCACGVLTSEKRAPDLQDLPWQVKLTNSEGK-DFCGGVIIRENFVL 131
Query: 688 TAAHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALF 747
T A C L TV+ R + K+ V H +Y+ A +ND++L
Sbjct: 132 TTAKCS-----LLHRNITVKTYFNRTSQDP---LMIKITHVHVHMRYDADA-GENDLSLL 182
Query: 748 QLKQKVKFNDHLLPVCLPPPNY---ELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPI 804
+L+ ++ LPVC P ++ L P TR + GW R T + + V +
Sbjct: 183 ELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWA-RNGTDLGNS---LTTRPVTL 238
Query: 805 ITRDICNKWLNNRELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVS 864
+ + C + LN VT C A G + WF+ G++
Sbjct: 239 VEGEECGQVLNVT---VTTRTYCER---SSVAAMHWMDGSVVTREHR---GSWFLTGVLG 289
Query: 865 WGIKCAHPHLPGVYAYVPKYVTWIQDIMD 893
+ V +Y W + IM+
Sbjct: 290 SQ-PVGGQAHMVLVTKVSRYSLWFKQIMN 317
Score = 31.6 bits (72), Expect = 1.1
Identities = 14/82 (17%), Positives = 23/82 (28%), Gaps = 18/82 (21%)
Query: 455 GFQCDVN------RCIPL--DWQCDGHIDCQDQTDELNCE----PCKADEIHCGLNKCI- 501
G C C + C C + NCE C + + C+
Sbjct: 5 GSPCISQPCLHNGSCQDSIWGYTCT----CSPGYEGSNCELAKNECHPERTDGCQHFCLP 60
Query: 502 -SDYHVCDGKVDCPWGQDERNC 522
+ + C G+D + C
Sbjct: 61 GQESYTCSCAQGYRLGEDHKQC 82
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 242 bits (620), Expect = 2e-74
Identities = 73/246 (29%), Positives = 101/246 (41%), Gaps = 24/246 (9%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
I+GG E+ P WP AAL +++C G LIS +W+LTAAHC+ V L
Sbjct: 1 IVGGVEAVPNSWPHQAALFID--DMYFCGGSLISPEWILTAAHCMDGAGF-----VDVVL 53
Query: 709 GVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPN 768
G + H YN NDIA+ +L V + V L P+
Sbjct: 54 GAHNIREDEATQVTIQSTDFTVHENYN-SFVISNDIAVIRLPVPVTLTAAIATVGL--PS 110
Query: 769 YELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVCA 828
++ GT T GWG D+ + + +V+VPI++ C+ VT G +C
Sbjct: 111 TDVGVGTVVTPTGWGLPSDSALG-ISDVLRQVDVPIMSNADCDAVYG----IVTDGNICI 165
Query: 829 GYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIK-CAHPHLPGVYAYVPKYVTW 887
GGK C GDSGGPL GI S+G P + V ++ W
Sbjct: 166 DS-TGGKGTCNGDSGGPLNY-------NGLTYGITSFGAAAGCEAGYPDAFTRVTYFLDW 217
Query: 888 IQDIMD 893
IQ
Sbjct: 218 IQTQTG 223
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 241 bits (616), Expect = 1e-70
Identities = 64/328 (19%), Positives = 115/328 (35%), Gaps = 71/328 (21%)
Query: 611 KLKACNDDDDYPQ--LELTCTNIQCGTRRHLHNNFKARKRIIGGFESNPGDWPFLAAL-- 666
K+K +D ++ + + CG ++ P+ A +
Sbjct: 187 KVKDMECLEDVFYQMIDESQSLSLCGMV------------WEHRKGTDYHKQPWQAKISV 234
Query: 667 LGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVR 726
+ + C G ++S+ +VLTAAHC V +G +R ++
Sbjct: 235 IRPSKGHESCMGAVVSEYFVLTAAHCFTV--DDKEHSIKVSVGGEKR--------DLEIE 284
Query: 727 GVFAHSQYNIGAQ--------HDNDIALFQLKQKVKFNDHLLPVCLPPPNYELAPGTRCT 778
V H YNI + +D D+AL +LK K+K+ + P+CLP
Sbjct: 285 VVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPP 344
Query: 779 VIGWGK----------REDTRVSEYETAVNEVEVPIIT---RDICNKWLNNRELN----- 820
+ + VSE E + EV I + C +
Sbjct: 345 TTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKD 404
Query: 821 ----VTLGMVCAGYPEG--GKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIK--CAHP 872
VT +C G + C+GDSGGPL+ ++ G++SWG+ C +
Sbjct: 405 ISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRS---RFIQVGVISWGVVDVCKNQ 461
Query: 873 --------HLPGVYAYVPKYVTWIQDIM 892
H + + + + W+++ +
Sbjct: 462 KRQKQVPAHARDFHINLFQVLPWLKEKL 489
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 234 bits (598), Expect = 1e-65
Identities = 89/267 (33%), Positives = 134/267 (50%), Gaps = 21/267 (7%)
Query: 628 CTNIQCGTRRHLHNNFKARKRIIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVL 687
C + K R++GG ++P WP+ +L +C G LIS +WVL
Sbjct: 541 CAAPSFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGM-HFCGGTLISPEWVL 599
Query: 688 TAAHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALF 747
TAAHC+ + V LG + + +V +F DIAL
Sbjct: 600 TAAHCLE--KSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPTRK-------DIALL 650
Query: 748 QLKQKVKFNDHLLPVCLPPPNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITR 807
+L D ++P CLP PNY +A T C + GWG+ + T + + E ++P+I
Sbjct: 651 KLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGL---LKEAQLPVIEN 707
Query: 808 DICNK--WLNNRELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSW 865
+CN+ +LN R V +CAG+ GG D+CQGDSGGPL+C +++ + G+ SW
Sbjct: 708 KVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQGDSGGPLVCFEK---DKYILQGVTSW 761
Query: 866 GIKCAHPHLPGVYAYVPKYVTWIQDIM 892
G+ CA P+ PGVY V ++VTWI+ +M
Sbjct: 762 GLGCARPNKPGVYVRVSRFVTWIEGVM 788
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation;
1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 216 bits (553), Expect = 6e-65
Identities = 63/248 (25%), Positives = 100/248 (40%), Gaps = 30/248 (12%)
Query: 649 IIGGFESNPGDWPFLAALL--GGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTV 706
II G+E+ G +P+ A L + +C G LI ++W+LTAAHCV + V
Sbjct: 1 IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHDAVS-----VVV 55
Query: 707 QLGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPP 766
LG + + +HS +N + ND+AL ++ V++ D++ P+ LP
Sbjct: 56 YLGSAVQYEG---EAVVNSERIISHSMFN-PDTYLNDVALIKIPH-VEYTDNIQPIRLPS 110
Query: 767 PN--YELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLG 824
TV GWG + + + +I D C + +
Sbjct: 111 GEELNNKFENIWATVSGWG-----QSNTDTVILQYTYNLVIDNDRCAQEYPPGI--IVES 163
Query: 825 MVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIK--CAHPHLPGVYAYVP 882
+C GK C GDSGGP + + G+VS+ C P ++ V
Sbjct: 164 TICGDT-SDGKSPCFGDSGGPFVLSDK-----NLLIGVVSFVSGAGCE-SGKPVGFSRVT 216
Query: 883 KYVTWIQD 890
Y+ WIQ
Sbjct: 217 SYMDWIQQ 224
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 223 bits (570), Expect = 3e-62
Identities = 65/318 (20%), Positives = 110/318 (34%), Gaps = 61/318 (19%)
Query: 619 DDYPQLELTCTNIQCGTRRHLHNNFKARKRIIGGFESNPGDWPFLAAL--LGGPEFVFYC 676
D LE + + ++ P+ A + + + C
Sbjct: 431 KDMENLEDVFYQMID----ESQSLSLCGMVWEHRKGTDYHKQPWQAKISVIRPSKGHESC 486
Query: 677 AGVLISDQWVLTAAHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNI 736
G ++S+ +VLTAAHC V +G +R ++ V H YNI
Sbjct: 487 MGAVVSEYFVLTAAHCFTV--DDKEHSIKVSVGGEKR--------DLEIEVVLFHPNYNI 536
Query: 737 GAQ--------HDNDIALFQLKQKVKFNDHLLPVCLPPPNY-----ELAPGTRCTVIGWG 783
+ +D D+AL +LK K+K+ + P+CLP L P T C
Sbjct: 537 NGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEE 596
Query: 784 K-----REDTRVSEYETAVNEVEVPIIT---RDICNKWLNNRELN---------VTLGMV 826
+ VSE E + EV I + C + VT +
Sbjct: 597 LLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFL 656
Query: 827 CAGYPEG--GKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCA----------HPHL 874
C G + C+GDSGGPL+ ++ G++SWG+ H
Sbjct: 657 CTGGVSPYADPNTCRGDSGGPLIVHKRS---RFIQVGVISWGVVDVCKNQKRQKQVPAHA 713
Query: 875 PGVYAYVPKYVTWIQDIM 892
+ + + + W+++ +
Sbjct: 714 RDFHINLFQVLPWLKEKL 731
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_B 1hia_B
Length = 152
Score = 183 bits (468), Expect = 4e-54
Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 14/155 (9%)
Query: 740 HDNDIALFQLKQKVKFNDHLLPVCLPPPNYELAPGTRCTVIGWGK-REDTRVSEYETAVN 798
+ +D+ L +L+ K D + + LP E G+ C GWG E+ +
Sbjct: 6 YSHDLMLLRLQSPAKITDAVKVLELPTQEPE--LGSTCEASGWGSIEPGPDDFEFPDEIQ 63
Query: 799 EVEVPIITRDICNKWLNNRELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWF 858
V++ ++ C ++ VT M+CAGY GGKD C GDSGGPL+C W
Sbjct: 64 CVQLTLLQNTFCADAHPDK---VTESMLCAGYLPGGKDTCMGDSGGPLICN-----GMWQ 115
Query: 859 VGGIVSWG-IKCAHPHLPGVYAYVPKYVTWIQDIM 892
GI SWG C + P +Y + Y+ WI D +
Sbjct: 116 --GITSWGHTPCGSANKPSIYTKLIFYLDWIDDTI 148
>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B*
1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B
1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...
Length = 131
Score = 144 bits (365), Expect = 2e-40
Identities = 46/136 (33%), Positives = 66/136 (48%), Gaps = 8/136 (5%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
I+ G E+ PG WP+ +L F +C G LI++ WV+TAAHC V
Sbjct: 1 IVNGEEAVPGSWPWQVSLQDKTGF-HFCGGSLINENWVVTAAHCGVT------TSDVVVA 53
Query: 709 GVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPN 768
G + S + + K+ VF +S+YN +NDI L +L F+ + VCLP +
Sbjct: 54 GEFDQGSSSEKIQKLKIAKVFKNSKYN-SLTINNDITLLKLSTAASFSQTVSAVCLPSAS 112
Query: 769 YELAPGTRCTVIGWGK 784
+ A GT C GWG
Sbjct: 113 DDFAAGTTCVTTGWGL 128
>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C*
1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C
1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...
Length = 97
Score = 134 bits (339), Expect = 2e-37
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 799 EVEVPIITRDICNKWLNNRELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWF 858
+ +P+++ C K+ + + M+CAG G +C GDSGGPL+C+ + W
Sbjct: 9 QASLPLLSNTNCKKYWGTK---IKDAMICAG--ASGVSSCMGDSGGPLVCKKN---GAWT 60
Query: 859 VGGIVSWGIKCAHPHLPGVYAYVPKYVTWIQDIM 892
+ GIVSWG PGVYA V V W+Q +
Sbjct: 61 LVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTL 94
>1ijy_A Frizzled homolog 8; WNT receptor, frizzled protein structure,
cysteine-rich, signaling protein; 1.35A {Mus musculus}
SCOP: a.141.1.1
Length = 130
Score = 107 bits (268), Expect = 2e-27
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 4/129 (3%)
Query: 310 GDGNPSKGKCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYEL 369
G + + C + V C + Y YT PN +Q +A ++ + +++++C
Sbjct: 1 GSASAKELACQEITVPLCKG--IGYEYTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPD 58
Query: 370 ASLFLCAAMVPPCSSQ-GFFLRPCRSLCQETKRRCGFFFDVFGLPLPSMENCNLYPDDMK 428
FLC+ P C L PCRS+C+ K C +G P C+ P+
Sbjct: 59 LKFFLCSMYTPICLEDYKKPLPPCRSVCERAKAGCAPLMRQYGFAWPDRMRCDRLPEQ-G 117
Query: 429 YPDVKCVGH 437
PD C+ +
Sbjct: 118 NPDTLCMDY 126
>1ijx_A Secreted frizzled-related sequence protein 3; WNT receptor,
frizzled protein structure, cysteine-rich, SIG protein;
1.90A {Mus musculus} SCOP: a.141.1.1
Length = 127
Score = 104 bits (259), Expect = 2e-26
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 7/129 (5%)
Query: 317 GKCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCYELASLFLCA 376
C + + C +P+ T PN+L +Q++A +E +E ++ C FLCA
Sbjct: 3 AACEPVRIPLCKS--LPWEMTKMPNHLHHSTQANAILAMEQFEGLLGTHCSPDLLFFLCA 60
Query: 377 AMVPPC--SSQGFFLRPCRSLCQETKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKC 434
P C Q ++PC+S+C+ ++ C + P C+ P Y C
Sbjct: 61 MYAPICTIDFQHEPIKPCKSVCERARQGCEPILIKYRHSWPESLACDELPV---YDRGVC 117
Query: 435 VGHKQVQEE 443
+ + +
Sbjct: 118 ISPEAIVTA 126
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein
complex, RAP, escort protein, calcium- binding; 1.26A
{Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Length = 80
Score = 96.6 bits (241), Expect = 2e-24
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 450 KICLEG-FQCDVNRCIPLDWQCDGHIDCQDQTDELNCEP--CKADEIHCGLNKCISDYHV 506
K C + F+C +CI + CD DC D +DE +C C C + CI
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWA 60
Query: 507 CDGKVDCPWGQDERNCL 523
CD DC G DE
Sbjct: 61 CDNDPDCEDGSDEWPQR 77
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module,
complement type repeat, calcium, beta-2 hairpin,
loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Length = 82
Score = 92.7 bits (231), Expect = 5e-23
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 456 FQCDVNRCIPLDWQCDGHIDCQDQTDELNC----EPCKADEIHCGLNKCISDYHVCDGKV 511
F C RCIP+ W CD DC D++DE + C +CI+ CD
Sbjct: 10 FSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININWRCDNDN 69
Query: 512 DCPWGQDERNC 522
DC DE C
Sbjct: 70 DCGDNSDEAGC 80
Score = 44.2 bits (105), Expect = 5e-06
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 484 NCEPCKADEIHCGLNKCISDYHVCDGKVDCPWGQDERNC 522
+ C ++ C +CI CD DC DE
Sbjct: 1 SARTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESAS 39
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A
{Nesterenkonia abyssinica}
Length = 218
Score = 83.6 bits (206), Expect = 3e-18
Identities = 34/228 (14%), Positives = 63/228 (27%), Gaps = 32/228 (14%)
Query: 656 NPGDWPFLAALL-GGPEFVFYCAGVLISDQ---WVLTAAHCV-GNLTGLNIDEWTVQLGV 710
NP D P + + + F C+ +++ V TA HC+ G +
Sbjct: 2 NPADSPHIGKVFFSTNQGDFVCSANIVASANQSTVATAGHCLHDGNGGQFARNFVFAPA- 60
Query: 711 TRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPNYE 770
+ G + + +++ ++D A L+ K P +
Sbjct: 61 -YDYGESEHG-VWAAEELVTSAEWANRGDFEHDYAFAVLETKGGTTVQQQVGTASPIAFN 118
Query: 771 LAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVCAGY 830
G + G+ E + N+ + T G+ C
Sbjct: 119 QPRGQYYSAYGYPAAAPFNGQELHSCHGTAT-------------NDPMGSSTQGIPC--- 162
Query: 831 PEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVY 878
+ G SGGP + S+G + G Y
Sbjct: 163 -----NMTGGSSGGPWFLGNG---TGGAQNSTNSYGYTFLPNVMFGPY 202
>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_A 1hia_A
Length = 80
Score = 79.1 bits (196), Expect = 3e-18
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 649 IIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQL 708
IIGG E P+ A+ F C GVL++ +WVLTAAHC + + V L
Sbjct: 1 IIGGRECEKNSHPWQVAIYHYSSF--QCGGVLVNPKWVLTAAHCKND-------NYEVWL 51
Query: 709 GVTRRNSYAFFGTRFKVRGVFAHSQYN 735
G F V F H +N
Sbjct: 52 GRHNLFENENTAQFFGVTADFPHPGFN 78
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 88.4 bits (218), Expect = 5e-18
Identities = 38/87 (43%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 441 QEEKIRAMNKICLEG-FQCD--VNRCIPLDWQCDGHIDCQDQTDELNCEP--CKADEIHC 495
E + ++ C G F C VNRCIP W+CDG +DC + +DE C P C DE C
Sbjct: 54 DESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRC 113
Query: 496 GLNKCISDYHVCDGKVDCPWGQDERNC 522
KCIS VCD DC G DE +C
Sbjct: 114 HDGKCISRQFVCDSDRDCLDGSDEASC 140
Score = 86.8 bits (214), Expect = 1e-17
Identities = 29/76 (38%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 452 CLEG-FQCDVNRCIPLDWQCDGHIDCQDQTDELNCEP--CKADEIHCGLNKCISDYHVCD 508
C F C CI W+CDG DC+D++DE NC C+ DE C CI CD
Sbjct: 194 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCD 253
Query: 509 GKVDCPWGQDERNCLQ 524
+ DC DE C+
Sbjct: 254 REYDCKDMSDEVGCVN 269
Score = 85.3 bits (210), Expect = 4e-17
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 452 CLEG-FQCDVNRCIPLDWQCDGHIDCQDQTDELNCE----PCKADEIHCG--LNKCISDY 504
C FQC +CI W CDG +CQD +DE CK+ + CG +N+CI +
Sbjct: 24 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQF 83
Query: 505 HVCDGKVDCPWGQDERNC 522
CDG+VDC G DE+ C
Sbjct: 84 WRCDGQVDCDNGSDEQGC 101
Score = 84.1 bits (207), Expect = 1e-16
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 449 NKICLEG-FQCDVNRCIPLDWQCDGHIDCQDQTDELNCEP--CKADEIHCGLNKCISDYH 505
K C + F+C +CI + CD DC D +DE +C C C + CI
Sbjct: 103 PKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLW 162
Query: 506 VCDGKVDCPWGQDERNC 522
CD DC G DE
Sbjct: 163 ACDNDPDCEDGSDEWPQ 179
Score = 79.9 bits (196), Expect = 2e-15
Identities = 31/79 (39%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 456 FQCDVNRCIPLDWQCDGHIDCQDQTDELNCE------------PCKADEIHCGLNKCISD 503
FQC+ + CIP W CD DC+D +DE PC A E HC +CI
Sbjct: 150 FQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHS 209
Query: 504 YHVCDGKVDCPWGQDERNC 522
CDG DC DE NC
Sbjct: 210 SWRCDGGPDCKDKSDEENC 228
Score = 73.7 bits (180), Expect = 1e-13
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 456 FQCDVNRCIPLDWQCDGHIDCQDQTDELNC----EPCKADEIHCGLNKCISDYHVCDGKV 511
FQC CI QCD DC+D +DE+ C ++ C +CI+ VC+
Sbjct: 238 FQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMAR 297
Query: 512 DCPWGQDERNC 522
DC DE
Sbjct: 298 DCRDWSDEPIK 308
Score = 54.8 bits (131), Expect = 1e-07
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 470 CDGHIDCQDQTDELNCEPCKADEIHCGLNKCISDYHVCDGKVDCPWGQDERNC 522
+ + C+ +E C KCIS VCDG +C G DE
Sbjct: 7 WTVALLLAAAGTAVGD-RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQE 58
Score = 52.5 bits (125), Expect = 5e-07
Identities = 22/175 (12%), Positives = 40/175 (22%), Gaps = 26/175 (14%)
Query: 456 FQCDVNRCIPLDWQCDGHIDCQDQTDELN--CEPCKADEIHCG----------------- 496
F+C CI LD C+ DC+D +DE C + + + G
Sbjct: 279 FKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCP 338
Query: 497 LNKCISDYHVCDGKVDCPWGQDERNCLQLSGMMGDVAKGVLELYRPEHKTFHTSCITKYD 556
+ C+ +C +G + E
Sbjct: 339 DGFQLVAQRRCEDIDECQDPDTCSQL-------CVNLEGGYKCQCEEGFQLDPHTKACKA 391
Query: 557 PDNSPRAICARLGYTQVNHTELIREKPLTKMRHTGHQLDVSYNLPYSPYNDSMLK 611
+ + + L LD ++D +
Sbjct: 392 VGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQR 446
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus
intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Length = 215
Score = 82.7 bits (204), Expect = 5e-18
Identities = 35/253 (13%), Positives = 72/253 (28%), Gaps = 49/253 (19%)
Query: 646 RKRIIGGFESNPGDWPFLAAL---LGGPEFVFYCAGVLISDQWVLTAAHCVGNL-TGLNI 701
R ++ +N P+ + GG C G LI+ +LT HCV N +
Sbjct: 8 RTKV-----ANTRVAPYNSIAYITFGGS----SCTGTLIAPNKILTNGHCVYNTASRSYS 58
Query: 702 DEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLP 761
+ +V G+ + + + S Y D A+ + + + +
Sbjct: 59 AKGSVYPGMNDSTAVN---GSANMTEFYVPSGYINTGASQYDFAVIKTDTNI--GNTVGY 113
Query: 762 VCLPPPNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNV 821
+ GT + G+ + + V ++
Sbjct: 114 RSIRQVT--NLTGTTIKISGYPGDKMRSTGKVSQWEMSGSVTREDTNL------------ 159
Query: 822 TLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYV 881
D G+SG +L ++ + G+ + G + G
Sbjct: 160 -AYYTI--------DTFSGNSGSAMLDQN------QQIVGVHNAGYSNGTIN--GGPKAT 202
Query: 882 PKYVTWIQDIMDK 894
+V +I +
Sbjct: 203 AAFVEFINYAKAQ 215
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 84.9 bits (209), Expect = 5e-17
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 447 AMNKICLEG-FQCDVNRCIPLDWQCDGHIDCQDQTDELNCE----PCKADEIHCG--LNK 499
A+ C FQC +CI W CDG +CQD +DE CK+ + CG +N+
Sbjct: 1 AVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNR 60
Query: 500 CISDYHVCDGKVDCPWGQDERNC 522
CI + CDG+VDC G DE+ C
Sbjct: 61 CIPQFWRCDGQVDCDNGSDEQGC 83
Score = 79.5 bits (195), Expect = 2e-15
Identities = 34/139 (24%), Positives = 50/139 (35%), Gaps = 17/139 (12%)
Query: 391 PCRSLCQETKRRC--GFFFDVFGLPLPSMENCNLYPDDMKYPDVKCVGHKQVQEEKIRAM 448
+ Q C F + G + S C+ PD K +E+ A+
Sbjct: 164 RGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPD-----------CKDKSDEENCAV 212
Query: 449 NKICLEGFQCDVNRCIPLDWQCDGHIDCQDQTDELNCEP----CKADEIHCGLNKCISDY 504
+ FQC CI QCD DC+D +DE+ C ++ C +CI+
Sbjct: 213 ATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLD 272
Query: 505 HVCDGKVDCPWGQDERNCL 523
VC+ DC DE
Sbjct: 273 KVCNMARDCRDWSDEPIKE 291
Score = 78.3 bits (192), Expect = 6e-15
Identities = 31/79 (39%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 456 FQCDVNRCIPLDWQCDGHIDCQDQTDELNCE------------PCKADEIHCGLNKCISD 503
FQC+ + CIP W CD DC+D +DE PC A E HC +CI
Sbjct: 132 FQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHS 191
Query: 504 YHVCDGKVDCPWGQDERNC 522
CDG DC DE NC
Sbjct: 192 SWRCDGGPDCKDKSDEENC 210
Score = 51.3 bits (122), Expect = 1e-06
Identities = 24/124 (19%), Positives = 39/124 (31%), Gaps = 4/124 (3%)
Query: 456 FQCDVNRCIPLDWQCDGHIDCQDQTDELNCEPCKADEIHCGLNKCIS--DYHVCDGKVDC 513
F+C CI LD C+ DC+D +DE + C +E C + + C
Sbjct: 261 FKCHSGECITLDKVCNMARDCRDWSDE-PIKECGTNECLDNNGGCSHVCNDLKIGYECLC 319
Query: 514 PWGQDERNCLQLSGMMGDVAKGV-LELYRPEHKTFHTSCITKYDPDNSPRAICARLGYTQ 572
P G + + +L + C + D +A A
Sbjct: 320 PDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAY 379
Query: 573 VNHT 576
+ T
Sbjct: 380 LFFT 383
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module,
COMP repeat, calcium, cell membrane, coated PIT,
cytoplasm, DEVE protein; NMR {Homo sapiens}
Length = 80
Score = 66.0 bits (161), Expect = 1e-13
Identities = 17/69 (24%), Positives = 21/69 (30%), Gaps = 4/69 (5%)
Query: 449 NKICLEG-FQC-DVNRCIPLDWQCDGHIDCQDQTDELNCEPCKADEIHC--GLNKCISDY 504
K C F C + C+P W CDG DC D DE C + G
Sbjct: 6 GKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEELR 65
Query: 505 HVCDGKVDC 513
+
Sbjct: 66 VRLASHLRK 74
Score = 42.9 bits (101), Expect = 2e-05
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 484 NCEP--CKADEIHC-GLNKCISDYHVCDGKVDCPWGQDERNC 522
E C C G + C+ + +CDG DC G DE
Sbjct: 3 KLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA 44
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich
module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Length = 37
Score = 60.3 bits (147), Expect = 5e-12
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 452 CLEG-FQCDVNRCIPLDWQCDGHIDCQDQTDELNC 485
C F C CI W+CDG DC+D++DE NC
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 49.5 bits (119), Expect = 3e-08
Identities = 17/36 (47%), Positives = 18/36 (50%)
Query: 487 PCKADEIHCGLNKCISDYHVCDGKVDCPWGQDERNC 522
PC A E HC +CI CDG DC DE NC
Sbjct: 1 PCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
>3a7q_B Low-density lipoprotein receptor-related protein; signaling
protein; HET: NAG; 2.60A {Homo sapiens}
Length = 44
Score = 57.3 bits (139), Expect = 6e-11
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 452 CLEG-FQCDVNRCIPLDWQCDGHIDCQDQTDELNC 485
C + FQC RCIP W+CD DC D +DE +C
Sbjct: 8 CEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 46.9 bits (112), Expect = 2e-07
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 484 NCEP--CKADEIHCGLNKCISDYHVCDGKVDCPWGQDERNC 522
+ C+ D+ C +CI CD DC DE +C
Sbjct: 2 SGPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand
binding, calcium binding, LDLR, LRP, lipid binding
protein; NMR {Homo sapiens} SCOP: g.12.1.1
Length = 42
Score = 56.9 bits (138), Expect = 6e-11
Identities = 18/32 (56%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 456 FQCDVN-RCIPLDWQCDGHIDCQDQTDELNCE 486
FQC ++ CIPL W+CDG DC D +DE +CE
Sbjct: 9 FQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40
Score = 45.7 bits (109), Expect = 6e-07
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 487 PCKADEIHCGLN-KCISDYHVCDGKVDCPWGQDERNC 522
C DE C L+ CI CDG DC DE++C
Sbjct: 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich
repeat, ligand binding domain, calcium CAGE, ligand
binding protein; NMR {Rattus norvegicus}
Length = 48
Score = 56.6 bits (137), Expect = 1e-10
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 452 CLEG-FQC-DVNRCIPLDWQCDGHIDCQDQTDELNCEPC 488
C F+C D + CI ++CDG DC+D +DE C
Sbjct: 7 CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPTR 45
Score = 42.7 bits (101), Expect = 9e-06
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 485 CEP--CKADEIHCG-LNKCISDYHVCDGKVDCPWGQDERNC 522
C + + C + CI+ + CDG DC DE C
Sbjct: 2 AMVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand
binding module, ligand binding repeat, compleme repeat,
protein binding; NMR {Homo sapiens}
Length = 50
Score = 56.2 bits (136), Expect = 2e-10
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 449 NKICLEG-FQC-DVNRCIPLDWQCDGHIDCQDQTDELNCEPC 488
K C F C + C+P W CDG DC D DE C
Sbjct: 4 GKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGC 45
Score = 42.4 bits (100), Expect = 1e-05
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 485 CEP--CKADEIHC-GLNKCISDYHVCDGKVDCPWGQDERNC 522
E C C G + C+ + +CDG DC G DE
Sbjct: 2 SEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA 42
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium
binding, complement-like repeat, signaling protein; NMR
{Homo sapiens} SCOP: g.12.1.1
Length = 45
Score = 55.8 bits (135), Expect = 2e-10
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 452 CLEG-FQCDVNRCIPLDWQCDGHIDCQDQTDELNCE 486
C G F C +RCI W+CDG DC D +DE
Sbjct: 6 CQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPAL 41
Score = 45.0 bits (107), Expect = 1e-06
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 487 PCKADEIHCGLNKCISDYHVCDGKVDCPWGQDERNCL 523
C+ E C ++CI + CDG DC DE L
Sbjct: 5 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPAL 41
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 215
Score = 60.2 bits (145), Expect = 2e-10
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 437 HKQVQEEKIRAMNKIC--LEGFQCDVN-RCIPLDWQCDGHIDCQDQTDELNCEPCKADEI 493
H ++ ++ I NKI + + ++ R P + G + + +EL C E
Sbjct: 3 HDEIIDKLIERTNKITTSISHVESLLDDRLDPKRIRKAG--SLRHRVEELEDPSCDEHEH 60
Query: 494 HCGLN--KCISDYHVCDGKVDCPWGQDERNC 522
CG + +CIS VCDG DC G+DE++C
Sbjct: 61 QCGGDDPQCISKLFVCDGHNDCRNGEDEKDC 91
Score = 58.7 bits (141), Expect = 9e-10
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 456 FQC--DVNRCIPLDWQCDGHIDCQDQTDELNCEP--CKADEIHC--GLNKCI--SDYHVC 507
QC D +CI + CDGH DC++ DE +C D+ + C H+
Sbjct: 60 HQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIGDVCFDHCTKRRPEHMT 119
Query: 508 D 508
Sbjct: 120 L 120
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding,
calcium binding, complement-like repeat, LRP receptor,
signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Length = 44
Score = 54.6 bits (132), Expect = 5e-10
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 456 FQCDVNRCIPLDWQCDGHIDCQDQTDELNCE 486
F+C+ RCIP W CDG DC D +DE +
Sbjct: 10 FKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40
Score = 45.4 bits (108), Expect = 8e-07
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 485 CEPCKADEIHCGLNKCISDYHVCDGKVDCPWGQDERNC 522
C + + C +CI ++ CDG DC DE +
Sbjct: 2 SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHA 39
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor,
virus-protein complex, icosahedral virus, ATP-binding,
capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB:
1v9u_5*
Length = 39
Score = 53.1 bits (128), Expect = 1e-09
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 456 FQC--DVNRCIPLDWQCDGHIDCQDQTDELNC 485
C +CIP+ W+CDG DC DE NC
Sbjct: 6 ISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37
Score = 45.0 bits (107), Expect = 1e-06
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 488 CKADEIHC--GLNKCISDYHVCDGKVDCPWGQDERNC 522
C+ EI C +CI CDG+ DC G+DE NC
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and
PG950; disulfide bond, alpha helix, calcium CAGE,
signaling protein; NMR {Coturnix japonica} SCOP:
g.12.1.1
Length = 47
Score = 53.3 bits (128), Expect = 1e-09
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 456 FQCD-----VNRCIPLDWQCDGHIDCQDQTDELNC 485
F+C C P DW CDGH DC D DE C
Sbjct: 10 FRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44
Score = 42.9 bits (101), Expect = 8e-06
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 487 PCKADEIHCG-----LNKCISDYHVCDGKVDCPWGQDERNC 522
C + C +C +CDG DC G+DE C
Sbjct: 4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta
hairpin, 3-10 helix, calcium binding, membrane protein;
NMR {Coturnix coturnix} SCOP: g.12.1.1
Length = 47
Score = 52.9 bits (127), Expect = 2e-09
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 456 FQC-----DVNRCIPLDWQCDGHIDCQDQTDELNC 485
F+C C P DW CDGH DC D DE C
Sbjct: 12 FRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 42.9 bits (101), Expect = 7e-06
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 487 PCKADEIHC-----GLNKCISDYHVCDGKVDCPWGQDERNC 522
C + C +C +CDG DC G+DE C
Sbjct: 6 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 220
Score = 56.4 bits (135), Expect = 6e-09
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 11/80 (13%)
Query: 452 CLEG-FQCDVN--RCIPLDWQCDGHIDCQDQTDELNCEPCKADEIHCGLNKCI-SDYHVC 507
C + FQC N CI CDGH DC + DE + + C + G S +H C
Sbjct: 53 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDE-DPDVCDTSVVKAGNVFSGTSTWHGC 111
Query: 508 DGKVDCPWGQDERNCLQLSG 527
+D + ++
Sbjct: 112 LA------REDHVTRITITA 125
Score = 48.0 bits (113), Expect = 4e-06
Identities = 26/176 (14%), Positives = 46/176 (26%), Gaps = 11/176 (6%)
Query: 471 DGHIDCQDQTDELNCEPCKADEIHCGLN--KCISDYHVCDGKVDCPWGQDE--RNCLQLS 526
+ + ++ C+ CG N +CISD VCDG DC DE C
Sbjct: 36 HFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSV 95
Query: 527 GMMGDVAKGVL-----ELYRPEHKTFHTSCITKYDPDNSPRAICARLGYTQVNHTELIRE 581
G+V G + + + + A + H E +
Sbjct: 96 VKAGNVFSGTSTWHGCLAREDHVTRITITASKRRKFFTARIWLRALVESELERHGENVTS 155
Query: 582 KPLTKMRHTGHQLDVSYNLPYSPYNDSMLKLKACNDDDDYPQLELTCTNIQ--CGT 635
K + + + + D++ + C
Sbjct: 156 SFNAKGYYNFASRRLILLPTDDHDDHLAVVCSFNRGDNERAECHRVTEATLHQCAD 211
Score = 36.0 bits (82), Expect = 0.036
Identities = 10/103 (9%), Positives = 26/103 (25%), Gaps = 6/103 (5%)
Query: 418 ENCNLYPDDMKYPDVKCVGHKQVQEEKIRAMNKICLEGFQCDVNRCIPLDWQCDGHIDCQ 477
C D + + K+ + R + +E + + G+ +
Sbjct: 109 HGCLAREDHVTRITITAS--KRRKFFTARIWLRALVESELERHGENVTSSFNAKGYYNFA 166
Query: 478 DQTDELNCEPCKAD--EIHCGLNKCISDYHVCDGKVDCPWGQD 518
+ L D + C N+ ++ +
Sbjct: 167 SRRLILLPTDDHDDHLAVVCSFNRGDNER--AECHRVTEATLH 207
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling
protein; NMR {Homo sapiens}
Length = 43
Score = 50.5 bits (121), Expect = 1e-08
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 452 CLEG-FQC-DVNRCIPLDWQCDGHIDCQDQTDELNC 485
C G F C ++ +C+P C+G DC +Q DE NC
Sbjct: 7 CSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 44.7 bits (106), Expect = 1e-06
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 487 PCKADEIHCG-LNKCISDYHVCDGKVDCPWGQDERNC 522
C CG + KC+ C+G DC DE NC
Sbjct: 6 KCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory
protein, hexagonal bilayer, dihedral D6 symmetry; HET:
HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1
g.12.1.1 h.1.32.1
Length = 217
Score = 54.9 bits (131), Expect = 2e-08
Identities = 22/126 (17%), Positives = 36/126 (28%), Gaps = 4/126 (3%)
Query: 440 VQEEKIRAMNKICLEGFQCDVNRCIPLDWQCDGHIDCQDQTDELNCEPCKADEIHCGLN- 498
V+ + + + + D + + L C E C +
Sbjct: 6 VKNQNLHIDYLAKKLHDIEEEYNKLTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDV 65
Query: 499 -KCISDYHVCDGKVDCPWGQDE--RNCLQLSGMMGDVAKGVLELYRPEHKTFHTSCITKY 555
+CI D CDG+ DC G DE C +G G+ E + +T
Sbjct: 66 PECIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTGLATWTSCEDLNPDHAIVTIT 125
Query: 556 DPDNSP 561
Sbjct: 126 AAHRKS 131
Score = 54.1 bits (129), Expect = 3e-08
Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 11/102 (10%)
Query: 430 PDVKCVGHKQVQEEKIRAMNKICLEG-FQC--DVNRCIPLDWQCDGHIDCQDQTDELNCE 486
DV +Q++ C E +C DV CI CDG DC+D +DE + E
Sbjct: 32 HDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDE-DPE 90
Query: 487 PCKADEIHCGLN-KCISDYHVCDGKVDCPWGQDERNCLQLSG 527
C + H G + ++ + C+ + + ++
Sbjct: 91 TCSLNITHVGSSYTGLATWTSCEDL------NPDHAIVTITA 126
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 2e-08
Identities = 88/654 (13%), Positives = 176/654 (26%), Gaps = 204/654 (31%)
Query: 83 GNRRVRAIKKPPPIQTSTCKEY-DYH----TYEQIMHPTKSPDNIRQDSSISSDGYFSQT 137
+ + ++ + + CK+ D + E+I H S D + + +++
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL----FWTLL 72
Query: 138 SSPSYTV-RSMETPLLPHIKNKKKYN--IAKISLEGKGEEIDTG--ISSLEACSGNVSPL 192
S V + +E L + Y ++ I E + + T I + +
Sbjct: 73 SKQEEMVQKFVEEVL------RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 193 IKSHSTPACLQAVVKMHNDTSSNMSLHHRIIRDIRKPSTHTIRGRPYKIQYVQIVVNAIA 252
K + + R +R +++ + V+
Sbjct: 127 AKYNVS----------------------------RLQPYLKLRQALLELRPAKNVL---- 154
Query: 253 LFAIAG-G----IVSYFRAYPTQVS----IQYINRTVINRDHLAAIALPNENN--NQLDG 301
+ + G G + +Y Q I ++N + + L Q+D
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN---LKNCNSPETVLEMLQKLLYQIDP 211
Query: 302 KSVVHYNKGDGNPSKGKCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAI 361
+ + + E++ L K PY L L + +A+ A+
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSK-PYENCLL--VLLNVQ--NAKA-WNAF--- 262
Query: 362 IDVRCYEL-----ASL--FLCAAMVPPCS----SQGFFLRPCRSLCQETKRRCGFFFDVF 410
++ C L + FL AA S S E K
Sbjct: 263 -NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-------EVK---SLLLKYL 311
Query: 411 GLP---LPSMENCNLYP-----------DDMKYPDVKCVGHKQVQEEKIRAMNKICLEG- 455
LP E P D + D K V +K+ + + L
Sbjct: 312 DCRPQDLPR-EVLTTNPRRLSIIAESIRDGLATWD----NWKHVNCDKLTTIIESSLNVL 366
Query: 456 --------------FQCDVNRCIPLD-----WQCDGHIDCQDQTDELNCEPCKADEIHCG 496
F + IP W D ++L
Sbjct: 367 EPAEYRKMFDRLSVFPPSAH--IPTILLSLIWFDVIKSDVMVVVNKL------------- 411
Query: 497 LNKCISDYHVCDGKVDCPWGQDERNCLQLSGMMGDVAKGVLELYRPEHKTFHTSCITKY- 555
+ + + + P + L L++ H S + Y
Sbjct: 412 HKYSLVEKQPKESTISIP---S----IYLE----------LKVKLENEYALHRSIVDHYN 454
Query: 556 -----DPDN-SPRA----ICARLGY--TQVNHTELIREKPL---------TKMRHTGHQL 594
D D+ P + +G+ + H E + + K+RH
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS--- 511
Query: 595 DVSYNLPYSPYNDSMLKLKA-----CNDDDDYPQLELTCTN--IQCGTRRHLHN 641
++N +++ +LK C++D Y +L + + +L
Sbjct: 512 -TAWNAS-GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE--NLIC 561
Score = 47.5 bits (112), Expect = 2e-05
Identities = 63/450 (14%), Positives = 121/450 (26%), Gaps = 149/450 (33%)
Query: 394 SLCQETKRRCGFFFDVFGLPLPSMENCNLYPDDMKYPDVKCVGHKQVQEEKIRAMNKICL 453
+C K +C F +F L +++NCN P+ + + + K+
Sbjct: 169 DVCLSYKVQCKMDFKIFWL---NLKNCN-SPETV-----------------LEMLQKLL- 206
Query: 454 EGFQCDVNRCIPLDWQCDGHIDCQDQTDELNCEPCKADEIHCGLNKCISDYHVCDGKV-- 511
+Q D N D + + EL +C L + +V + K
Sbjct: 207 --YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL---VLL-NVQNAKAWN 260
Query: 512 ----DCP---WGQDERNCLQLSGM------MGDVAKGVLELYRPEHKTFHTSCITKYDPD 558
C + ++ LS + + L E K+ + P
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT---LTPDEVKSLLLKYLDC-RPQ 316
Query: 559 NSPRAIC-----------ARL--------GYTQVNHTEL--IREKPLTK-----MRHTGH 592
+ PR + + + VN +L I E L R
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 593 QL-----DVSYNLP---------YSPYNDSMLKLKACND----DDDYPQLELTCTNIQCG 634
+L ++P +D M+ + + + + ++ +I
Sbjct: 377 RLSVFPPSA--HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 635 TRRHLHNNFKARKRIIGGFESNPGDWPFLAALLGGPEFVFYCAGVLISDQWVLTAAHCVG 694
+ L N + + I+ D + +
Sbjct: 435 LKVKLENEYALHRSIV--------------------------------DHYNIPKTFDSD 462
Query: 695 NLTGLNIDE-WTVQLG-----VTRRNSYAFFGT-----RF---KVRGVFAHSQYNIGAQH 740
+L +D+ + +G + F RF K+R H A
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR----HDSTAWNASG 518
Query: 741 DNDIALFQLKQKVKFNDHLLPVCLPPPNYE 770
L QLK + ++ P YE
Sbjct: 519 SILNTLQQLK---FYKPYICDND---PKYE 542
Score = 39.8 bits (92), Expect = 0.004
Identities = 54/392 (13%), Positives = 100/392 (25%), Gaps = 124/392 (31%)
Query: 580 REKPLTKMRHTGHQLDVSYNL------------------------PYSPYNDSMLKLKAC 615
R +P K+R +L + N+ + L LK C
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 616 NDDDDYP-QLELTCTNIQC-GTRRHLH--------NNFKARKRIIGGFESNPGDWPFLAA 665
N + L+ I T R H ++ +A R + +S P+
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL--LKS----KPYENC 246
Query: 666 LLGGPEFVFYCAGVL--ISDQWVLTA--AHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGT 721
LL VL + + A C ++ +T R
Sbjct: 247 LL-----------VLLNVQNAKAWNAFNLSC--------------KILLTTRFKQVTDFL 281
Query: 722 RFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLP--VCLPPPNYELAPGTRCTV 779
+ +++ D +L + D LP V P ++
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD--LPREVLTTNP---RR----LSI 332
Query: 780 IGWGKREDTRVSEY-------------ETAVNEVE-----------------VPIITRDI 809
I R+ + E+++N +E I T +
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 810 CNKWLNNRELNVTLGMV-CAGYPEGGKDACQGDSGGP-LLCRSSHNFEQWFVGGIVSWGI 867
W + + +V + + Y K + P + E
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN----------E 442
Query: 868 KCAHPHLPGVYAYVPKYVTW--IQDIMDKYSY 897
H + Y + + I +D+Y Y
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A
{Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*
Length = 268
Score = 45.8 bits (107), Expect = 3e-05
Identities = 32/228 (14%), Positives = 53/228 (23%), Gaps = 33/228 (14%)
Query: 673 VFYCAGVLISD------QWVLTAAHCVGNLTGLNID---EWTVQLGVTRRNSYAFFGTRF 723
C G L+++ + LTA HC W Q R + G
Sbjct: 33 TLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWNYQNSTCRAPNTPASGANG 92
Query: 724 KVRGVFAHSQYN-IGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPNYELAPGTRCTVIGW 782
S +D L +L P + L W
Sbjct: 93 DGSMSQTQSGSTVKATYATSDFTLLELNNA------------ANPAFNLFWAG------W 134
Query: 783 GKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVCAGYPEGGKDACQGDS 842
+R+ V I+ + + G G S
Sbjct: 135 DRRDQNYPGAIAIHHPNVAEKRISNSTSPTSFVAWGGGAGTTHLNVQWQPSGGVTEPGSS 194
Query: 843 GGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYVTWIQD 890
G P+ + E+ +G + C+ Y + +W
Sbjct: 195 GSPIY-----SPEKRVLGQLHGGPSSCSATGTNRSDQYGRVFTSWTGG 237
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 44.8 bits (105), Expect = 7e-05
Identities = 23/152 (15%), Positives = 49/152 (32%), Gaps = 22/152 (14%)
Query: 646 RKRIIGGFESNPGDWPFLAA---LLGGPEFVFYCAGVLISDQWVLTAAHCVGNLTGLNID 702
R +I ++ + + + P F +GV++ +LT H V G D
Sbjct: 8 RHQI-----TDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHG---D 59
Query: 703 EWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVK---FNDHL 759
++ + N + F + +S + D+A+ + + + +
Sbjct: 60 PHALKAFPSAINQDNYPNGGFTAEQITKYSG-------EGDLAIVKFSPNEQNKHIGEVV 112
Query: 760 LPVCLPPPNYELAPGTRCTVIGWGKREDTRVS 791
P + N E TV G+ +
Sbjct: 113 KPATM-SNNAETQTNQNITVTGYPGDKPVATM 143
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 2e-04
Identities = 98/692 (14%), Positives = 192/692 (27%), Gaps = 264/692 (38%)
Query: 248 VNAIAL--FAIAGGIVSYFRAYPTQVSIQYINRTVINRDHLAAIALPNENNNQLDG-KSV 304
++A + ++ G + + PT + + + + P E D +
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTA---SFFIASQLQEQFNKILPEPTEGFAADDEPTTP 57
Query: 305 VHY---------NKGDGNPSKGKCVLLEVKFCLDHKVPYNYTLF-PNYLGD-----FSQS 349
+ + + +L CL F YL +
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVL--NLCLTE--------FENCYLEGNDIHALAAK 107
Query: 350 ---DAQTDLEAYEAIIDVRCYELASLFLCAAMVPPCSSQGFFLRPCRSLCQETKRRCGFF 406
+ T L + +I + Y A + +S F R++ + +
Sbjct: 108 LLQENDTTLVKTKELI--KNYITARIMAKRPFDKKSNS-ALF----RAVGEGNAQ----L 156
Query: 407 FDVF---GLPLPSMENCNLYPDDMK-----YP----DVKCVGHKQVQE--EKIRAMNKIC 452
+F G N + Y ++++ Y D+ + + E K+
Sbjct: 157 VAIFGGQG-------NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 453 LEGFQCDVNRCIPLDWQCDGHIDCQDQTDELNCEPCKADEIHCGLNKCISDYHVCDGKVD 512
+G ++ L+W ++ T P D+ DY + +
Sbjct: 210 TQGL--NI-----LEW-----LENPSNT------P---DK----------DY-LLSIPIS 237
Query: 513 CPWGQDERNCL-QLSGMMGDVAKGVLELYRPEHKTFHTSC-ITKYDPDNSPRAICARLGY 570
CP + QL+ H + + + + P + G+
Sbjct: 238 CPL-----IGVIQLA-----------------H--YVVTAKLLGFTPGELRSYLKGATGH 273
Query: 571 TQV--------------NHTELIREKPLTKMRHTG---HQLDVSYNLPYSPYNDS----- 608
+Q + +R K +T + G ++ + +LP S DS
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVR-KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 609 -----MLKLKACNDDDDYPQLE--LTCTNIQCGTRRHLHNNFKARKRIIGGFESNPGDWP 661
ML + + Q++ + TN + +
Sbjct: 333 GVPSPMLSISNLTQE----QVQDYVNKTNSHLPAGKQVE--------------------- 367
Query: 662 FLAALLGGPEFVFYCAGVLISDQWVLTAAHCVGN---LTGLNIDEWTVQLGVTRRNSYAF 718
+L+ G V++ G L GLN+
Sbjct: 368 --ISLVNGA------------KNLVVS-----GPPQSLYGLNL----------------- 391
Query: 719 FGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLP---PPNYELAPGT 775
+R A S + Q F ++K+KF++ LPV P L P +
Sbjct: 392 -----TLRKAKAPSGLD---QSR---IPFS-ERKLKFSNRFLPVASPFHSH--L-LVPAS 436
Query: 776 RCTV-------IGWGKRE------DTR----VSEYETAVNEVEVPIITRDICNKWLNNRE 818
+ + ++ DT + +++E V I R W +
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK-WETTTQ 495
Query: 819 LNVTLGMVCAGYPEGGKDACQGDSG-GPLLCR 849
T ++ G P G G SG G L R
Sbjct: 496 FKATH-ILDFG-P-G------GASGLGVLTHR 518
Score = 43.9 bits (103), Expect = 2e-04
Identities = 75/467 (16%), Positives = 129/467 (27%), Gaps = 166/467 (35%)
Query: 89 AIKKPPPIQTSTCKEYDY-HTYEQIMHPTKSPDNIRQDSSI------------------- 128
A K T+ K + Y K P + + +S++
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 129 SSDGYFS------QTSSPSYT--VRSMETPLLPHIKNKKKYNIAKISLEGKGEEIDTGIS 180
++D YF QT ++ L I+ + +G I +
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE----KVFTQGLNILEWLE 220
Query: 181 SLEA-------CSGNVS-PLIKSHSTPACLQAVVKMH-NDTSSNMSLHHRIIRDIRKPST 231
+ S +S PLI +Q H T+ + +R K +T
Sbjct: 221 NPSNTPDKDYLLSIPISCPLI------GVIQLA---HYVVTAKLLGFTPGELRSYLKGAT 271
Query: 232 HTIRGRPYKI-------------QYVQIVVNAI-ALFAIAGGIVSYFRAYP-TQVSIQYI 276
+G + + V AI LF I G+ Y AYP T + +
Sbjct: 272 GHSQG----LVTAVAIAETDSWESFFVSVRKAITVLFFI--GVRCY-EAYPNTSLPPSIL 324
Query: 277 NRTV---------------INRDHLAAIALPNENNNQLDGKSVVH---YNKGD-----GN 313
++ + ++ + N+ N+ L V N G
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYV--NKTNSHLPAGKQVEISLVNGAKNLVVSGP 382
Query: 314 PS--KGKCVLLEVKFC---LD-HKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDVRCY 367
P G + L LD ++P FS+ R
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIP------------FSE----------------RKL 414
Query: 368 ELASLFLCAAMVP---PCSSQGFFLRPCRSLCQETKRRCGFFFDVFGLPLPSMENCNLYP 424
+ ++ FL P P S L P L + D+ N +
Sbjct: 415 KFSNRFL-----PVASPFHSH--LLVPASDLINK---------DL------VKNNVSFNA 452
Query: 425 DDMKYPDVKCV--GHKQVQEEKIRAMNKICLEGFQCDVNRCIPLDWQ 469
D++ P V G +R ++ E D +P+ W+
Sbjct: 453 KDIQIP-VYDTFDG------SDLRVLSGSISERI-VDCIIRLPVKWE 491
Score = 42.0 bits (98), Expect = 0.001
Identities = 52/350 (14%), Positives = 96/350 (27%), Gaps = 136/350 (38%)
Query: 524 QLSGMMGDVAKGVLELYRPEHKTFHTSCITKYDPDNSP--RAICAR--------LGYTQV 573
Q GM G ++LY S + + R G++
Sbjct: 1627 QEQGM------G-MDLY-----------------KTSKAAQDVWNRADNHFKDTYGFSI- 1661
Query: 574 NHTELIREKPLTKMRH----TGHQLDVSYN-LPYSPYNDSMLKLKACNDDDDY------- 621
+++ P+ H G ++ +Y+ + + D LK + + +
Sbjct: 1662 --LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF 1719
Query: 622 --PQLELTCT-NIQ-------CGTRRHLHNNFKARKRIIGGFESNPGDWPFLAAL-LGGP 670
+ L+ T Q L K++ G P D F A LG
Sbjct: 1720 RSEKGLLSATQFTQPALTLMEKAAFEDL----KSK----GLI---PADATF-AGHSLG-- 1765
Query: 671 EFVFY-----CAGVL-ISDQWVLTAAHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFK 724
E Y A V+ I V++ V R
Sbjct: 1766 E---YAALASLADVMSIES---------------------LVEV-VFYRGMTM---QVAV 1797
Query: 725 VRGVFAHSQYNIGAQHDNDIALFQLKQKVKF--------NDHLL-PVCLPPPNYELAPGT 775
R S Y + A + +A ++ +++ L+ V NY +
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV-----NYNVENQQ 1852
Query: 776 RCTVIGWGKREDTRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGM 825
V G + +N +++ I + EL +L +
Sbjct: 1853 --YVAA-GDLRA--LDTVTNVLNFIKLQKI---------DIIELQKSLSL 1888
Score = 40.0 bits (93), Expect = 0.004
Identities = 46/350 (13%), Positives = 103/350 (29%), Gaps = 96/350 (27%)
Query: 582 KPLTKMRHTGHQLDVSYNLPYSPY------NDSMLKL------KACNDDDDYPQLEL--- 626
+PLT + H G L+ +P + + + K+ DD+ EL
Sbjct: 7 RPLT-LSH-G-SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 627 ----TCTNIQCGTRRHLHNNFKARKRIIGGFESNPGDWPFL---------AALLGGPEFV 673
+ ++ + FE+ +L A LL +
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNL---CLTEFENC-----YLEGNDIHALAAKLLQEND-- 113
Query: 674 FYCAGVLISDQWVLTAAHCVGNLTGLNIDEWT-------VQLGVTRRNSYAFFG------ 720
L+ + ++ + D+ + V G + A FG
Sbjct: 114 ----TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ--LVAIFGGQGNTD 167
Query: 721 TRFK-VRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPNYELAPGTRCTV 779
F+ +R ++ +G L + + L + + E +
Sbjct: 168 DYFEELRDLYQTYHVLVGD-------LIK-----FSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 780 IGWGKREDTRVSEYETAVNEVEVPIIT-RDICNKWLNNRELNVTLGMVCAGYPEGGKDAC 838
+ W + + + P+I + + + + L T P +
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT--------PGELRSYL 267
Query: 839 QGDSG------GPLLCRSSHNFEQWF--VGGIVSW----GIKC--AHPHL 874
+G +G + + ++E +F V ++ G++C A+P+
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT 317
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 554
Score = 43.4 bits (101), Expect = 3e-04
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 468 WQCDGHI-DCQDQTDELNC---EPCKADEIHCGLNKCISDYHVCDGKVDCPWGQDERNC 522
C G I D + C C D +C+ + VC+G DC G DE +C
Sbjct: 42 TICSGDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDC 100
Score = 41.1 bits (95), Expect = 0.002
Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 3/109 (2%)
Query: 452 CLEGFQC-DVNRCIPLDWQCDGHIDCQDQTDELNCEPCKADEIHCGLNKCISDYHVCDGK 510
C + FQC + RC+ C+G DC D +DE +CE +A + C + I
Sbjct: 66 CGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQYEPIPGSQKAALG 125
Query: 511 VDCPWGQDERNCLQLSGMMGDVAKGVLELYRPEHKTFHTSCITKYDPDN 559
+ +D ++ S G +R + ++C Y D+
Sbjct: 126 YNILTQEDAQSVYDASYYGGQCETVYNGEWR--ELRYDSTCERLYYGDD 172
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 40.4 bits (94), Expect = 0.001
Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 16/112 (14%)
Query: 674 FYCAGVLISDQWVLTAAHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQ 733
F +GV++ +LT H V G D ++ + N + F + +S
Sbjct: 34 FIASGVVVGKDTLLTNKHVVDATHG---DPHALKAFPSAINQDNYPNGGFTAEQITKYSG 90
Query: 734 YNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPNY----ELAPGTRCTVIG 781
+ D+A+ + + + + P E TV G
Sbjct: 91 -------EGDLAIVKF--SPNEQNKHIGEVVKPATMSNNAETQVNQNITVTG 133
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase;
2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A
Length = 246
Score = 39.6 bits (92), Expect = 0.002
Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 7/107 (6%)
Query: 678 GVLISDQWVLTAAHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIG 737
GVLI ++T H + + + A
Sbjct: 52 GVLIGKNTIVTNYHVAREAAK---NPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESP 108
Query: 738 AQHDNDIALFQLK---QKVKFNDHLLPVCLPPPNYELAPGTRCTVIG 781
D+A+ +LK + D + P +P ++A G + +++G
Sbjct: 109 YGQGLDLAIIKLKPNEKGESAGDLIQPANIPDHI-DIAKGDKYSLLG 154
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}
Length = 204
Score = 36.4 bits (84), Expect = 0.022
Identities = 38/228 (16%), Positives = 63/228 (27%), Gaps = 60/228 (26%)
Query: 678 GVLISDQWVLTAAHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIG 737
G ++ +LT H N D T + N + + I
Sbjct: 26 GFVVGKNTILTNKHVSKNYK--VGDRITAHPNSDKGNGGIYSIKKI------------IN 71
Query: 738 AQHDNDIALFQLK--------QKVKFNDHLLPVCLPPPNYELAPGTRCTVIGWGKREDTR 789
D+++ Q++ + FND++ P G R VIG+ +
Sbjct: 72 YPGKEDVSVIQVEERAIERGPKGFNFNDNVTPFKYAA---GAKAGERIKVIGYPHPYKNK 128
Query: 790 VSEYETA--VNEVEVPIITRDICNKWLNNRELNVTLGMVCAGYPEGGKDACQGDSGGPLL 847
YE+ V VE I G+SG P+L
Sbjct: 129 YVLYESTGPVMSVEGSSIVYSA--------------------------HTESGNSGSPVL 162
Query: 848 CRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPKYVT-WIQDIMDK 894
N + GI + Y + +I + +DK
Sbjct: 163 -----N-SNNELVGIHFASDVKNDDNRNAYGVYFTPEIKKFIAENIDK 204
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus
aureus} PDB: 2w7u_A
Length = 200
Score = 36.2 bits (84), Expect = 0.027
Identities = 14/108 (12%), Positives = 33/108 (30%), Gaps = 20/108 (18%)
Query: 678 GVLISDQWVLTAAHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIG 737
GV++ ++T H + D + ++ + G + +
Sbjct: 26 GVVVGKNTIVTNKHIAK-----SNDIFKNRVSAHHSSKGKGGGNYDVKD-I-------VE 72
Query: 738 AQHDNDIALFQLKQK----VKFNDHLLPVCLPPPNYELAPGTRCTVIG 781
D+A+ + + + FN ++ R +VIG
Sbjct: 73 YPGKEDLAIVHVHETSTEGLNFNKNVSYTKFAD---GAKVKDRISVIG 117
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.12
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 545 KTFHTSCITKYDPDNSPR-AICARL 568
K S + Y D++P AI A +
Sbjct: 23 KKLQAS-LKLYADDSAPALAIKATM 46
Score = 30.7 bits (68), Expect = 1.1
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 3/23 (13%)
Query: 607 DSMLKLKACNDDDDYPQLELTCT 629
+ LKL A DD P L + T
Sbjct: 26 QASLKLYA---DDSAPALAIKAT 45
Score = 29.1 bits (64), Expect = 4.0
Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 27/47 (57%)
Query: 9 SLRRYSEAYPIRRDSTSSNYDYPELVKIPPPRPELPRKLSEGNASVE 55
SL+ Y+ DS P L I A++E
Sbjct: 28 SLKLYA---D---DSA------PALA-I--------------KATME 47
Score = 28.4 bits (62), Expect = 6.8
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 7/34 (20%)
Query: 581 EKPLTKMRHTGHQLDVSYNLPYSPYNDSMLKLKA 614
EK K +L S L Y+ + L +KA
Sbjct: 18 EKQALK------KLQASLKL-YADDSAPALAIKA 44
>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT
catalysis, protein folding, protein stability, packing
DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes}
SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A*
1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A*
2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A
1gbl_A ...
Length = 198
Score = 33.4 bits (76), Expect = 0.18
Identities = 47/247 (19%), Positives = 70/247 (28%), Gaps = 71/247 (28%)
Query: 664 AALLGGPEFVF----YC----AGVLISDQWVLTAAHCVGNLTGLNIDEWTVQLGVTRRNS 715
A ++GG E+ C + + + +TA HC T R
Sbjct: 1 ANIVGGIEYSINNASLCSVGFSVTRGATKGFVTAGHCGTV-------------NATARIG 47
Query: 716 YAFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPNYELAPGT 775
A GT FA + ND A V +
Sbjct: 48 GAVVGT-------FAARVFP-----GNDRAW------VSLTSAQTL-----LPRVANGSS 84
Query: 776 RCTVIGWGKREDTRVSEYETAVNEVEVPII-----TRDICNKWLN-NRELNVTLGMVCAG 829
TV G E AV + T C N N G V G
Sbjct: 85 FVTVRGST----------EAAVGA---AVCRSGRTTGYQCGTITAKNVTANYAEGAVR-G 130
Query: 830 YPEGGKDACQGDSGGPLLCRSSHNFEQWFVGGIVSWGIKCAHPHLPGVYAYVPK-YVTWI 888
+G +GDSGG + + G++S G ++ + G+ A +
Sbjct: 131 LTQGNACMGRGDSGGSWITSAGQ------AQGVMSGGNVQSNGNNCGIPASQRSSLFERL 184
Query: 889 QDIMDKY 895
Q I+ +Y
Sbjct: 185 QPILSQY 191
>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels,
thermophIle, kinetic stabilit thermostability, protein
folding; HET: 2AB; 1.44A {Thermobifida fusca}
Length = 186
Score = 32.9 bits (75), Expect = 0.30
Identities = 31/192 (16%), Positives = 49/192 (25%), Gaps = 55/192 (28%)
Query: 664 AALLGGPEFVF---YC----AGVLISDQWVLTAAHCVGNLTGLNIDEWTVQLGVTRRNSY 716
AA++GG + F C + S TA HC G + G + +
Sbjct: 1 AAIIGGNPYYFGNYRCSIGFSVRQGSQTGFATAGHC-----GSTGTRVSSPSGTVAGSYF 55
Query: 717 AFFGTRFKVRGVFAHSQYNIGAQHDNDIALFQLKQKVKFNDHLLPVCLPPPNYELAPGTR 776
D+ ++ P G
Sbjct: 56 P-----------------------GRDMGWVRITSADT----------VTPLVNRYNGGT 82
Query: 777 CTVIGWGKRED-TRVSEYETAVNEVEVPIITRDICNKWLNNRELNVTLGMVCAGYPEGGK 835
TV G + + V I +++ ++ +T CA
Sbjct: 83 VTVTGSQEAATGSSVCRSGATTGWRCGTIQSKNQTVRYAEGTVTGLTRTTACAE------ 136
Query: 836 DACQGDSGGPLL 847
GDSGGP L
Sbjct: 137 ---GGDSGGPWL 145
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second
tetrahedral inter tetrapeptide, beta barrels, alpha
helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus}
SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E
2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E
2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E
...
Length = 185
Score = 31.3 bits (71), Expect = 0.73
Identities = 37/214 (17%), Positives = 51/214 (23%), Gaps = 57/214 (26%)
Query: 682 SDQWVLTAAHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHD 741
S + LTA HC W T GT F +
Sbjct: 24 STYYFLTAGHCTDG-----ATTWWANSARTTV-----LGTT--SGSSF----------PN 61
Query: 742 NDIALFQLKQKVKFNDHLLPVCLPPPNYELAPGTRCTVIGWGKREDTRVSEYETAVNEVE 801
ND + + D + G T G +
Sbjct: 62 NDYGIVRYTNTTIPKDGTVGGQDITSAANATVGMAVTRRG--------------STTGTH 107
Query: 802 VPIITRDICNKWLNNRELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVGG 861
+T N +N G V G A GDSGGPL + G
Sbjct: 108 SGSVTAL-------NATVNYGGGDVVYGMIRTNVCAEPGDSGGPLYSGTR-------AIG 153
Query: 862 IVSWGIKCAHPHLPGVYAYVPKYVTWIQDIMDKY 895
+ S G G + P + + + Y
Sbjct: 154 LTSGGSGNCSS--GGTTFFQP-----VTEALSAY 180
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 32.5 bits (73), Expect = 0.74
Identities = 24/108 (22%), Positives = 32/108 (29%), Gaps = 21/108 (19%)
Query: 452 CLEGFQCDVNRCIPLDWQCDGHIDCQDQTDELNCEPCKADEIHCGLNKCISDYHVCDGKV 511
C F+CD RCI +C+G DC D +DE +C K VC K
Sbjct: 119 CKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTK---------------AVCTRKY 163
Query: 512 DCPWGQDERNCLQLSGMMGDVAKGVLELYRPEHKTFHTSCITKYDPDN 559
+ L G G ++ C T
Sbjct: 164 NPIPSVQ------LMGNGFHFLAGEPRGEVLDNSFTGGICKTVKSSRT 205
>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A
{Staphylococcus aureus}
Length = 210
Score = 30.9 bits (70), Expect = 1.3
Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 25/112 (22%)
Query: 678 GVLISDQWVLTAAHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIG 737
G +I ++T H + D T + N G +K++ +
Sbjct: 27 GFVIGKNTIITNKHVSKDYK--VGDRITAHPNGDKGN-----GGIYKIKSI-------SD 72
Query: 738 AQHDNDIALFQLKQK--------VKFNDHLLPVCLPPPNYELAPGTRCTVIG 781
D DI++ ++++ FN+++ + + VIG
Sbjct: 73 YPGDEDISVMNIEEQAVERGPKGFNFNENVQAFNFAK---DAKVDDKIKVIG 121
>1hpg_A Glutamic acid specific protease; serine protease,
hydrolase-hydrolase inhibitor complex; 1.50A
{Streptomyces griseus} SCOP: b.47.1.1
Length = 187
Score = 30.2 bits (68), Expect = 2.0
Identities = 29/215 (13%), Positives = 56/215 (26%), Gaps = 57/215 (26%)
Query: 682 SDQWVLTAAHCVGNLTGLNIDEWTVQLGVTRRNSYAFFGTRFKVRGVFAHSQYNIGAQHD 741
++ +TA HC + +GV S+
Sbjct: 24 GARYFVTAGHCTNISANWSASSGGSVVGVREGTSF-----------------------PT 60
Query: 742 NDIALFQLKQKVKFNDHLLPVCLPPPNYELAPGTRCTVIGWGK-REDTRVSEYETAVNEV 800
ND + V++ D P +L G+ + + + +
Sbjct: 61 NDYGI------VRYTDGSSP----AGTVDLYNGSTQDISSAANAVVGQAIKKSGSTTKVT 110
Query: 801 EVPIITRDICNKWLNNRELNVTLGMVCAGYPEGGKDACQGDSGGPLLCRSSHNFEQWFVG 860
+ ++ + + N+ C+ GDSGG S
Sbjct: 111 SGTVTAVNVTVNYGDGPVYNMVRTTACSA---------GGDSGGAHFAGSV-------AL 154
Query: 861 GIVSWGIKCAHPHLPGVYAYVPKYVTWIQDIMDKY 895
GI S C+ G + P + + + Y
Sbjct: 155 GIHSGSSGCSGT--AGSAIHQP-----VTEALSAY 182
>3hkl_A Muscle, skeletal receptor tyrosine protein kinase; MUSK, receptor
tyrosine kinase, frizzled CRD, ATP-binding, D bond,
glycoprotein; HET: NAG; 2.10A {Rattus norvegicus}
Length = 197
Score = 30.3 bits (67), Expect = 2.0
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 4/95 (4%)
Query: 306 HYNKGDGNPSKGKCVLLEVKFCLDHKVPYNYTLFPNYLGDFSQSDAQTDLEAYEAIIDV- 364
H++ SKG C + C V + F D ++ A+ + V
Sbjct: 7 HHHHHGPRGSKGYCAQYRGEVCDAVLVKDSLVFFNTSYPDPEEAQELLIHTAWNELKAVS 66
Query: 365 -RCYELASLFLCAAMVPPCSSQGFFLRPCRSLCQE 398
C A LC + CS +C+E
Sbjct: 67 PLCRPAAEALLCNHLFQECSPGVLPTP--MPICRE 99
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 29.4 bits (66), Expect = 5.1
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 8/71 (11%)
Query: 612 LKACNDDDDYPQLELTCTNIQCGTRRHLHNNFKARKRIIGGFESNPGDWPFLAALLGGPE 671
LK + + + + RR L + +A K + + A+ G +
Sbjct: 35 LKEILEQGLF-------SKVTLIGRRKLTFDEEAYKNVNQ-EVVDFEKLDDYASAFQGHD 86
Query: 672 FVFYCAGVLIS 682
F C G
Sbjct: 87 VGFCCLGTTRG 97
>2oo4_A Notch 2, neurogenic locus notch homolog protein 2, HN2, notch2,
NOTC2; alpha-beta-sandwich, SEA domain, LNR, LIN12 notch
repeat, CY rich, HD domain; 2.00A {Homo sapiens}
Length = 234
Score = 28.6 bits (63), Expect = 7.7
Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 1/71 (1%)
Query: 454 EGFQCDVNRCIPLDWQCDGHIDCQDQTDELNCEPCKADEIHCGLNKCISDYHVCDGKVDC 513
+G C + P C + C D + E C E +C + C C
Sbjct: 30 DGGDCSLTMENP-WANCSSPLPCWDYINNQCDELCNTVECLFDNFECQGNSKTCKYDKYC 88
Query: 514 PWGQDERNCLQ 524
+ +C Q
Sbjct: 89 ADHFKDNHCNQ 99
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan
sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter
heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A*
Length = 506
Score = 28.9 bits (63), Expect = 8.5
Identities = 7/37 (18%), Positives = 11/37 (29%)
Query: 50 GNASVEANTISGSSNAINMNSTSNNNMGSNTTIGNRR 86
NT +N + +N IGN +
Sbjct: 252 QENVYYGNTYLNCQGTMNFRHGDHQVAINNFYIGNDQ 288
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.2 bits (62), Expect = 9.7
Identities = 8/51 (15%), Positives = 12/51 (23%), Gaps = 10/51 (19%)
Query: 620 DYPQLELTCTNIQCGTRRHLHNNFKARKRIIGGFE---SNPGDWPFL--AA 665
+Y + RI+ G E + FL A
Sbjct: 123 NYSSEV-----KENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVIAY 168
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.431
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,064,220
Number of extensions: 854428
Number of successful extensions: 2447
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1727
Number of HSP's successfully gapped: 231
Length of query: 897
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 795
Effective length of database: 3,853,851
Effective search space: 3063811545
Effective search space used: 3063811545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.5 bits)