Query psy7169
Match_columns 235
No_of_seqs 224 out of 735
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 19:58:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1162|consensus 100.0 6.5E-37 1.4E-41 295.2 21.4 212 2-219 71-293 (617)
2 KOG1161|consensus 99.8 1.1E-18 2.4E-23 156.7 13.3 116 2-138 62-177 (310)
3 PF03105 SPX: SPX domain; Int 99.7 1.6E-17 3.4E-22 144.8 9.6 55 53-107 221-275 (275)
4 COG5036 SPX domain-containing 99.3 3.3E-11 7.1E-16 111.8 10.4 110 2-137 59-168 (509)
5 COG5408 SPX domain-containing 98.9 1.1E-09 2.4E-14 98.5 5.7 54 52-105 237-290 (296)
6 PF11660 DUF3262: Protein of u 70.7 25 0.00053 25.6 6.6 55 157-211 20-75 (76)
7 PF01544 CorA: CorA-like Mg2+ 70.2 47 0.001 28.8 9.7 27 62-88 153-179 (292)
8 COG3924 Predicted membrane pro 69.9 13 0.00028 27.2 4.8 54 165-218 15-68 (80)
9 PF11241 DUF3043: Protein of u 52.6 35 0.00076 28.8 5.3 53 159-216 75-127 (170)
10 PF03904 DUF334: Domain of unk 52.4 1.7E+02 0.0036 25.9 18.3 18 80-97 95-112 (230)
11 PF10267 Tmemb_cc2: Predicted 50.5 2.3E+02 0.0051 27.0 14.0 22 6-27 219-240 (395)
12 PF08196 UL2: UL2 protein; In 44.4 31 0.00066 23.6 3.0 24 188-211 26-49 (60)
13 PRK14157 heat shock protein Gr 43.0 91 0.002 27.5 6.5 24 6-29 84-107 (227)
14 PRK00965 tetrahydromethanopter 42.1 73 0.0016 24.4 5.1 60 116-177 34-93 (96)
15 TIGR03017 EpsF chain length de 41.2 3.1E+02 0.0066 25.7 11.8 26 158-183 398-423 (444)
16 KOG3312|consensus 41.2 1.2E+02 0.0026 25.3 6.5 62 156-218 84-157 (186)
17 PF15383 TMEM237: Transmembran 39.8 88 0.0019 28.0 6.1 49 157-209 97-145 (253)
18 COG5409 EXS domain-containing 39.6 13 0.00028 34.9 0.8 58 161-219 4-67 (384)
19 PF10777 YlaC: Inner membrane 38.2 2E+02 0.0042 23.9 7.3 21 163-183 37-57 (155)
20 PF12108 SF3a60_bindingd: Spli 38.1 39 0.00086 20.0 2.4 17 60-76 7-23 (28)
21 PRK09841 cryptic autophosphory 37.3 4.7E+02 0.01 26.7 14.3 28 2-29 270-297 (726)
22 PF05767 Pox_A14: Poxvirus vir 35.7 1.9E+02 0.004 22.0 6.3 40 159-198 9-50 (92)
23 PF12732 YtxH: YtxH-like prote 35.7 36 0.00078 24.1 2.5 19 160-178 1-19 (74)
24 PF05440 MtrB: Tetrahydrometha 35.1 68 0.0015 24.6 4.0 57 116-174 33-93 (97)
25 COG4062 MtrB Tetrahydromethano 34.2 95 0.0021 24.1 4.6 69 109-179 27-99 (108)
26 KOG1281|consensus 34.2 23 0.00051 35.3 1.6 31 68-98 10-40 (586)
27 PRK14163 heat shock protein Gr 33.7 2.6E+02 0.0056 24.5 7.9 23 6-28 47-69 (214)
28 PF05961 Chordopox_A13L: Chord 33.6 53 0.0011 23.6 2.9 20 164-183 6-25 (68)
29 PF10183 ESSS: ESSS subunit of 33.4 49 0.0011 25.4 3.0 35 156-192 55-89 (105)
30 PF10112 Halogen_Hydrol: 5-bro 33.1 2.9E+02 0.0063 23.1 12.0 77 55-135 110-186 (199)
31 PRK14155 heat shock protein Gr 32.9 2E+02 0.0043 24.9 7.1 80 6-94 20-110 (208)
32 PRK15033 tricarballylate utili 32.8 1.8E+02 0.0039 27.8 7.2 65 161-225 241-307 (389)
33 PRK14140 heat shock protein Gr 32.1 2.2E+02 0.0048 24.4 7.1 23 6-28 44-66 (191)
34 PF05915 DUF872: Eukaryotic pr 31.6 2.2E+02 0.0048 22.3 6.5 29 166-194 51-79 (115)
35 PRK14139 heat shock protein Gr 31.3 2.5E+02 0.0055 23.9 7.3 24 6-29 39-62 (185)
36 PRK10633 hypothetical protein; 31.2 1.3E+02 0.0028 22.3 4.8 25 188-212 41-65 (80)
37 PHA02680 ORF090 IMV phosphoryl 30.7 2E+02 0.0042 21.8 5.7 41 158-198 8-51 (91)
38 PF04930 FUN14: FUN14 family; 30.5 50 0.0011 24.9 2.6 15 154-168 85-99 (100)
39 PF11143 DUF2919: Protein of u 29.9 1.4E+02 0.003 24.5 5.3 19 156-174 52-70 (149)
40 PF09602 PhaP_Bmeg: Polyhydrox 29.8 3.4E+02 0.0074 22.8 9.3 40 57-96 115-154 (165)
41 PHA02898 virion envelope prote 29.2 2.4E+02 0.0052 21.4 5.9 38 161-198 11-50 (92)
42 cd02682 MIT_AAA_Arch MIT: doma 29.1 52 0.0011 24.0 2.4 21 2-22 50-70 (75)
43 PRK00753 psbL photosystem II r 27.9 93 0.002 19.8 3.0 20 161-180 16-35 (39)
44 PRK14161 heat shock protein Gr 27.4 2.9E+02 0.0062 23.3 7.0 23 6-28 26-48 (178)
45 CHL00038 psbL photosystem II p 26.9 1.1E+02 0.0024 19.4 3.2 20 161-180 15-34 (38)
46 PF11026 DUF2721: Protein of u 26.8 3.2E+02 0.0069 21.6 6.9 62 116-179 21-85 (130)
47 PF00858 ASC: Amiloride-sensit 26.8 65 0.0014 29.6 3.2 18 162-179 421-438 (439)
48 PF06638 Strabismus: Strabismu 26.5 99 0.0022 30.4 4.5 42 161-205 130-173 (505)
49 PHA03048 IMV membrane protein; 25.8 2.6E+02 0.0055 21.2 5.6 37 160-197 10-48 (93)
50 PF10762 DUF2583: Protein of u 25.6 2.3E+02 0.0051 21.3 5.3 23 161-183 9-32 (89)
51 PF06631 DUF1154: Protein of u 25.5 47 0.001 22.1 1.4 16 80-95 17-32 (47)
52 COG5393 Predicted membrane pro 25.2 2.4E+02 0.0053 22.5 5.6 23 157-179 45-67 (131)
53 PRK10692 hypothetical protein; 25.0 3.1E+02 0.0067 20.8 6.4 24 160-183 8-32 (92)
54 PRK02251 putative septation in 24.0 3.2E+02 0.0069 20.6 6.1 28 156-183 29-56 (87)
55 PF05493 ATP_synt_H: ATP synth 24.0 45 0.00097 23.6 1.2 23 204-226 37-63 (65)
56 PF11694 DUF3290: Protein of u 23.9 1E+02 0.0022 25.3 3.5 55 157-221 15-69 (149)
57 PF14851 FAM176: FAM176 family 23.6 83 0.0018 26.1 2.9 23 157-179 23-45 (153)
58 PRK00159 putative septation in 23.2 3.3E+02 0.0071 20.5 5.9 28 156-183 28-55 (87)
59 KOG0999|consensus 23.0 6.1E+02 0.013 25.8 9.0 28 53-80 149-177 (772)
60 PF10805 DUF2730: Protein of u 22.8 3.5E+02 0.0076 20.6 6.2 21 52-72 64-84 (106)
61 PRK14144 heat shock protein Gr 22.4 4.2E+02 0.009 22.9 7.1 39 56-94 95-138 (199)
62 PRK14143 heat shock protein Gr 22.0 5.6E+02 0.012 22.7 8.7 22 7-28 75-96 (238)
63 PF14241 DUF4341: Domain of un 21.6 1.2E+02 0.0027 20.9 3.1 21 156-176 2-22 (62)
64 KOG4466|consensus 21.5 4.4E+02 0.0096 24.1 7.3 27 2-28 31-57 (291)
65 KOG1162|consensus 21.5 92 0.002 31.5 3.3 23 157-179 227-249 (617)
66 COG5570 Uncharacterized small 21.4 2.8E+02 0.0061 19.0 5.4 24 6-29 5-28 (57)
67 PF02419 PsbL: PsbL protein; 21.3 1E+02 0.0022 19.5 2.2 20 161-180 14-33 (37)
68 PRK14151 heat shock protein Gr 21.3 4.5E+02 0.0097 22.1 7.0 23 6-28 27-49 (176)
69 PF09675 Chlamy_scaf: Chlamydi 21.1 49 0.0011 26.0 1.0 48 84-131 2-49 (114)
70 TIGR00802 nico high-affinity n 20.6 5.4E+02 0.012 23.5 7.6 22 72-93 87-108 (280)
71 PF01540 Lipoprotein_7: Adhesi 20.4 1.9E+02 0.0042 26.4 4.7 63 68-132 197-271 (353)
72 PF01956 DUF106: Integral memb 20.4 4E+02 0.0086 21.6 6.5 68 116-183 43-113 (168)
73 PF04508 Pox_A_type_inc: Viral 20.3 1.8E+02 0.0038 16.5 2.9 19 8-26 3-21 (23)
74 PRK14154 heat shock protein Gr 20.1 5.8E+02 0.013 22.2 8.9 24 6-29 59-82 (208)
No 1
>KOG1162|consensus
Probab=100.00 E-value=6.5e-37 Score=295.18 Aligned_cols=212 Identities=35% Similarity=0.439 Sum_probs=156.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhccC-CCCChHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy7169 2 TFSMEKLAEATRKFSNLRNELKRSQEETMKSAKAKRKSALL-LSRHK-TDVPARKLQELKLAFSEYYLSLILLQNYQNLN 79 (235)
Q Consensus 2 ~Fy~eK~aE~~rr~~~L~~ql~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~Lk~al~E~y~~L~lLk~Y~~LN 79 (235)
+||.+|++|+.+|.+.|++|++.+++....++..-+.+... +.+.+ .++..+..++|+.|++|||+.|.+||+|+.||
T Consensus 71 ~Fy~~k~~e~~~~~~~L~~ql~~~~~~r~~~~~~~~~~~~~~~~~~~f~~~~~~~e~~lk~af~Efy~~L~llk~y~~lN 150 (617)
T KOG1162|consen 71 KFYKEKVKEAREEAEELNKQLDALIALRVKSRSSVDISDRAARLRGKFTKVLRKAEEKLKLAFSEFYLKLRLLKNYQFLN 150 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999988764210000000000 00000 11234556899999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCcchhHHHhhhhcCCCCChhhHHHHHHHHHHHHHHHhccCcHHHHHhHcCCCCCCCCCCchhH
Q psy7169 80 FTGFRKILKKHDKLLNVDVGAKWRAEHVDISHFYVNKDINHLISETEATVTSELEEGDRQKAMKRLRVPPLGEQQSPWTT 159 (235)
Q Consensus 80 ~tgF~KIlKK~DK~~~~~~~~~~~~~~v~~~~F~~~~~l~~li~~ve~ly~~~f~~gdrk~A~~~Lr~~~~~~~~~~~~~ 159 (235)
.|||+||+|||||+++++. ..| .+.|+.++|.+++++++|+.+||++|+++|++|||++||+.||++ .++++ ..+
T Consensus 151 ~~~f~KI~KKyDK~~~~~~-~~~-~~~v~~s~f~~~~~i~~l~~~Ve~~f~~~fan~nr~~~m~~lr~~-~~e~h--~~~ 225 (617)
T KOG1162|consen 151 VTAFRKILKKYDKITSRDA-KRY-VKMVDKSYFTSSDEITRLMLEVEETFTKHFANGNRRKAMKVLRPK-LKEKH--RPT 225 (617)
T ss_pred HHHHHHHHHHHHhhcccch-HHH-HHHHHHHhcccHHHHHHHHHHHHHHHHHHHhCCChhHhhhhcCCc-ccccC--CCc
Confidence 9999999999999999998 888 578999999999999999999999999999999999999999987 55554 444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc--cccchhh-HHHhhhhHHHHHHHHHHH------HHhcccccc
Q psy7169 160 FKVGLFLGCFAILFAIILLRVWTERI--VALSQIL-FKVGLFLGCFAILFAIIL------LRDGVRRNE 219 (235)
Q Consensus 160 F~~Gl~~G~~~~l~i~~~~~~~~~~~--~~~~~~~-~~~~iyrg~fl~il~~~~------~~~~~rin~ 219 (235)
|..|+++||++.+.++++..++.... +.....+ .++|+|+ ++++++..++ .|.++||||
T Consensus 226 ~~~~f~~g~~~~l~val~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~v~l~~fl~~~niy~W~~~rVNy 293 (617)
T KOG1162|consen 226 FSTGFFVGCGIGLSVALVALIYLRNILQSEQRFYMETMFPLYG-FGLVVLHKFLYNVNIYEWSRTRVNY 293 (617)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH-HHHHHHHHHHhcCchHHHHHhcCCc
Confidence 55555555555444444444332210 0133334 5578886 7777766666 478999994
No 2
>KOG1161|consensus
Probab=99.79 E-value=1.1e-18 Score=156.71 Aligned_cols=116 Identities=23% Similarity=0.393 Sum_probs=101.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy7169 2 TFSMEKLAEATRKFSNLRNELKRSQEETMKSAKAKRKSALLLSRHKTDVPARKLQELKLAFSEYYLSLILLQNYQNLNFT 81 (235)
Q Consensus 2 ~Fy~eK~aE~~rr~~~L~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~al~E~y~~L~lLk~Y~~LN~t 81 (235)
.||.+|++|+.+|+++|+.+.++ . +.+.++......|++++.++..++.+|.+|++||+|
T Consensus 62 ~F~lek~~el~~Rl~~L~e~~~~-----~---------------~~~~~~~~~~~~lr~~l~~~~~em~~L~~fs~LN~t 121 (310)
T KOG1161|consen 62 GFQLEKESELIIRLKELEEKIDA-----L---------------SLEPPSAEEMKELREELVDFHGEMVLLENFSRLNYT 121 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc-----c---------------ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 59999999999999999999887 1 112234455689999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCCCcchhHHHhhhhcCCCCChhhHHHHHHHHHHHHHHHhccCcH
Q psy7169 82 GFRKILKKHDKLLNVDVGAKWRAEHVDISHFYVNKDINHLISETEATVTSELEEGDR 138 (235)
Q Consensus 82 gF~KIlKK~DK~~~~~~~~~~~~~~v~~~~F~~~~~l~~li~~ve~ly~~~f~~gdr 138 (235)
||+||||||||.+|...+. ++...|..+||++.+.+++|+.+++.+|...++.++-
T Consensus 122 Gf~KILKK~DKrtg~~l~~-~f~~~l~~~Pf~~~e~~~~Lv~e~~~l~~~l~~~~~~ 177 (310)
T KOG1161|consen 122 GFAKILKKHDKRTGYRLRP-YFQVRLLHQPFFTTEQLFRLVYEISILLDLLRPSNRN 177 (310)
T ss_pred HHHHHHHHHhccccccccc-HHHHHHHhCCCchhhhHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999987776 4567799999999999999999999999999887644
No 3
>PF03105 SPX: SPX domain; InterPro: IPR004331 The SPX domain is named after SYG1/Pho81/XPR1 proteins. This 180 residue length domain is found at the amino terminus of a variety of proteins. In the yeast protein SYG1, the N terminus directly binds to the G- protein beta subunit and inhibits transduction of the mating pheromone signal [] suggesting that all the members of this family are involved in G-protein associated signal transduction. The C-terminal of these proteins often have an EXS domain (IPR004342 from INTERPRO) []. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 from Neurospora crassa, are also members of this family [, ]. NUC-2 contains several ankyrin repeats (IPR002110 from INTERPRO). Several members of this family are the XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with Murine leukemia virus (MLV) []. The similarity between SYG1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, and Saccharomyces cerevisiae [, ]. In addition, given the similarities between XPR1 and SYG1 and phosphate regulatory proteins, it has been proposed that XPR1 might be involved in G-protein associated signal transduction [, , ] and may itself function as a phosphate sensor [].
Probab=99.72 E-value=1.6e-17 Score=144.81 Aligned_cols=55 Identities=42% Similarity=0.579 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhcCCCCcchhHHHhhh
Q psy7169 53 RKLQELKLAFSEYYLSLILLQNYQNLNFTGFRKILKKHDKLLNVDVGAKWRAEHV 107 (235)
Q Consensus 53 ~~~~~Lk~al~E~y~~L~lLk~Y~~LN~tgF~KIlKK~DK~~~~~~~~~~~~~~v 107 (235)
+....|+.+|.|+|+.|.+|++|++||+|||+||||||||+++++.+..||..+|
T Consensus 221 ~~~~~l~~~~~e~y~~l~~Lk~f~~LN~taf~KIlKK~DK~~~~~~~~~y~~~v~ 275 (275)
T PF03105_consen 221 KARKQLKKAFIELYRELELLKSFVELNRTAFRKILKKYDKVTGTSLSDDYMEEVV 275 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhhccC
Confidence 3457899999999999999999999999999999999999999999999987654
No 4
>COG5036 SPX domain-containing protein involved in vacuolar polyphosphate accumulation [Inorganic ion transport and metabolism]
Probab=99.25 E-value=3.3e-11 Score=111.84 Aligned_cols=110 Identities=21% Similarity=0.313 Sum_probs=86.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy7169 2 TFSMEKLAEATRKFSNLRNELKRSQEETMKSAKAKRKSALLLSRHKTDVPARKLQELKLAFSEYYLSLILLQNYQNLNFT 81 (235)
Q Consensus 2 ~Fy~eK~aE~~rr~~~L~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~al~E~y~~L~lLk~Y~~LN~t 81 (235)
+|..+|.+|+.+|++.|+.|..+.+.... ++... + .+.|--.....|.+|..||+|
T Consensus 59 ~F~~~k~~ev~erl~~leeq~~~~i~~~d-----------------s~~~~---~----~LeE~L~~v~~l~kF~RLN~t 114 (509)
T COG5036 59 GFQLSKYSEVMERLRTLEEQTDEAIQELD-----------------SDNFP---K----ILEEELDTVHDLAKFSRLNFT 114 (509)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHhhccc-----------------CCcch---h----HHHHHHHHHHHHHhhhhhhhH
Confidence 58899999999999999999874433221 11111 1 333444478899999999999
Q ss_pred HHHHHHHhhhhcCCCCcchhHHHhhhhcCCCCChhhHHHHHHHHHHHHHHHhccCc
Q psy7169 82 GFRKILKKHDKLLNVDVGAKWRAEHVDISHFYVNKDINHLISETEATVTSELEEGD 137 (235)
Q Consensus 82 gF~KIlKK~DK~~~~~~~~~~~~~~v~~~~F~~~~~l~~li~~ve~ly~~~f~~gd 137 (235)
||.||+|||||.+|...++-| +-++...|| .+++.+.|+.++..+|.-..++++
T Consensus 115 GF~KIvKKHDK~~~y~lkpvf-qvrLk~~p~-~se~yd~Ll~kis~LY~~lR~~~~ 168 (509)
T COG5036 115 GFKKIVKKHDKHTGYSLKPVF-QVRLKAKPF-FSEQYDPLLYKISSLYNILRSSLS 168 (509)
T ss_pred HHHHHHHhhcCCCCceechhH-HHHhccCCc-chhhhcHHHHHHHHHHHHHHhcCC
Confidence 999999999999999888765 455767777 578999999999999999888877
No 5
>COG5408 SPX domain-containing protein [Signal transduction mechanisms]
Probab=98.94 E-value=1.1e-09 Score=98.49 Aligned_cols=54 Identities=35% Similarity=0.513 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhcCCCCcchhHHHh
Q psy7169 52 ARKLQELKLAFSEYYLSLILLQNYQNLNFTGFRKILKKHDKLLNVDVGAKWRAE 105 (235)
Q Consensus 52 ~~~~~~Lk~al~E~y~~L~lLk~Y~~LN~tgF~KIlKK~DK~~~~~~~~~~~~~ 105 (235)
+.....|+++++++|..|..|++|++||+|||+||+|||||.++++....||..
T Consensus 237 ~q~R~~lkk~ii~~y~~l~~lksf~eLN~tGf~Ki~KK~DK~l~~~~~~~~~s~ 290 (296)
T COG5408 237 YQKRSLLKKRIIELYIQLHQLKSFIELNYTGFSKITKKYDKTLHQNLRHEYMSR 290 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 444568999999999999999999999999999999999999999999988754
No 6
>PF11660 DUF3262: Protein of unknown function (DUF3262); InterPro: IPR021676 This entry represents small, hydrophobic proteins that are found occasionally on plasmids such as the Pseudomonas putida TOL (toluene catabolic) plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=70.68 E-value=25 Score=25.57 Aligned_cols=55 Identities=9% Similarity=0.054 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc-cccccchhhHHHhhhhHHHHHHHHHHHH
Q psy7169 157 WTTFKVGLFLGCFAILFAIILLRVWTE-RIVALSQILFKVGLFLGCFAILFAIILL 211 (235)
Q Consensus 157 ~~~F~~Gl~~G~~~~l~i~~~~~~~~~-~~~~~~~~~~~~~iyrg~fl~il~~~~~ 211 (235)
-.+...|++....+.-.++.++..|.. .+......-..--+.|+..+++...|++
T Consensus 20 l~~li~g~~~avllLW~aWa~~~~y~Gw~~~~v~~~~~~~~~iR~~~lllv~~f~f 75 (76)
T PF11660_consen 20 LSLLILGILFAVLLLWAAWALWSAYRGWANGKVDFRDFLSFAIRFAVLLLVLTFFF 75 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888777777777777777766 3211122223345778998888777765
No 7
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=70.17 E-value=47 Score=28.76 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy7169 62 FSEYYLSLILLQNYQNLNFTGFRKILK 88 (235)
Q Consensus 62 l~E~y~~L~lLk~Y~~LN~tgF~KIlK 88 (235)
+.++-+.+..++....-+...+.++++
T Consensus 153 l~~l~~~l~~l~~~l~~~~~~l~~~~~ 179 (292)
T PF01544_consen 153 LFDLRRELSRLRRSLSPLREVLQRLLR 179 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344445566666666667777777776
No 8
>COG3924 Predicted membrane protein [Function unknown]
Probab=69.90 E-value=13 Score=27.16 Aligned_cols=54 Identities=15% Similarity=-0.086 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhccccccchhhHHHhhhhHHHHHHHHHHHHHhccccc
Q psy7169 165 FLGCFAILFAIILLRVWTERIVALSQILFKVGLFLGCFAILFAIILLRDGVRRN 218 (235)
Q Consensus 165 ~~G~~~~l~i~~~~~~~~~~~~~~~~~~~~~~iyrg~fl~il~~~~~~~~~rin 218 (235)
.+|.++.-++.-++..|.+.+.+.....|+.==...+.+|++|+.++|..+++-
T Consensus 15 AlgLtllYl~gW~v~AYlp~~t~G~~gfP~WFE~aCi~lPllFi~l~~~mvkfi 68 (80)
T COG3924 15 ALGLTLLYLAGWLVAAYLPGNTPGFTGFPLWFEMACILLPLLFIVLCWAMVKFI 68 (80)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455444433333455542222222232112345688889999999888865
No 9
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=52.59 E-value=35 Score=28.77 Aligned_cols=53 Identities=9% Similarity=0.232 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHhhhhHHHHHHHHHHHHHhccc
Q psy7169 159 TFKVGLFLGCFAILFAIILLRVWTERIVALSQILFKVGLFLGCFAILFAIILLRDGVR 216 (235)
Q Consensus 159 ~F~~Gl~~G~~~~l~i~~~~~~~~~~~~~~~~~~~~~~iyrg~fl~il~~~~~~~~~r 216 (235)
-..+++|+-+.+++++..++ .+. +....+..+-+|..++++++=.|++|..++
T Consensus 75 ~~i~e~fmP~alv~lv~~~v---~~~--~~~~~~~~~~~~~~~~~~iid~~~l~r~vk 127 (170)
T PF11241_consen 75 RNIGEFFMPVALVLLVLSFV---VPS--PQVQLYVTLAMYVLLLLVIIDGVILGRRVK 127 (170)
T ss_pred cchHHHHHHHHHHHHHHHHH---ccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777666666655554 122 233344455667666666666777776554
No 10
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=52.45 E-value=1.7e+02 Score=25.93 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhhhcCCCC
Q psy7169 80 FTGFRKILKKHDKLLNVD 97 (235)
Q Consensus 80 ~tgF~KIlKK~DK~~~~~ 97 (235)
..+|..++|+.=|.+.+.
T Consensus 95 ~~dF~~~Lq~~Lk~V~td 112 (230)
T PF03904_consen 95 HNDFQDILQDELKDVDTD 112 (230)
T ss_pred HHHHHHHHHHHHHhhchH
Confidence 478999999987777654
No 11
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=50.52 E-value=2.3e+02 Score=27.03 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7169 6 EKLAEATRKFSNLRNELKRSQE 27 (235)
Q Consensus 6 eK~aE~~rr~~~L~~ql~~~~~ 27 (235)
+.+.|.+.....|+..++.+.+
T Consensus 219 ~el~eik~~~~~L~~~~e~Lk~ 240 (395)
T PF10267_consen 219 EELREIKESQSRLEESIEKLKE 240 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777776666654
No 12
>PF08196 UL2: UL2 protein; InterPro: IPR013269 This entry contains Orf UL2 of Human cytomegalovirus (HHV-5) (Human herpesvirus 5), which is a short protein of unknown function [].
Probab=44.37 E-value=31 Score=23.61 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=18.5
Q ss_pred cchhhHHHhhhhHHHHHHHHHHHH
Q psy7169 188 LSQILFKVGLFLGCFAILFAIILL 211 (235)
Q Consensus 188 ~~~~~~~~~iyrg~fl~il~~~~~ 211 (235)
.....+-|++-||+|++.+.+|-.
T Consensus 26 ashaqygfrllrgif~itlviwt~ 49 (60)
T PF08196_consen 26 ASHAQYGFRLLRGIFLITLVIWTV 49 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456699999999998888753
No 13
>PRK14157 heat shock protein GrpE; Provisional
Probab=42.95 E-value=91 Score=27.53 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy7169 6 EKLAEATRKFSNLRNELKRSQEET 29 (235)
Q Consensus 6 eK~aE~~rr~~~L~~ql~~~~~~~ 29 (235)
++++++..++++++.++.++....
T Consensus 84 ~~l~~le~e~~e~kd~llR~~AEf 107 (227)
T PRK14157 84 TPLGQAKKEAAEYLEALQRERAEF 107 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888777766543
No 14
>PRK00965 tetrahydromethanopterin S-methyltransferase subunit B; Provisional
Probab=42.09 E-value=73 Score=24.42 Aligned_cols=60 Identities=20% Similarity=0.154 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHHhccCcHHHHHhHcCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q psy7169 116 KDINHLISETEATVTSELEEGDRQKAMKRLRVPPLGEQQSPWTTFKVGLFLGCFAILFAIIL 177 (235)
Q Consensus 116 ~~l~~li~~ve~ly~~~f~~gdrk~A~~~Lr~~~~~~~~~~~~~F~~Gl~~G~~~~l~i~~~ 177 (235)
+.+..-++++|++=..+...=|...+ -|.+.|.+|..+...-++.++|.|+.+.|++..+
T Consensus 34 ~pi~E~i~kLe~~addL~nsLdP~~~--~l~S~PgREg~~~~AG~~tn~fyGf~igL~i~~l 93 (96)
T PRK00965 34 DPIEEEINKLEALADDLENSLDPRNP--PLNSYPGREGTYYIAGIFTNMFYGFWIGLAILFL 93 (96)
T ss_pred hHHHHHHHHHHHHHHHHHhccCCCCC--hhhcCCCCcceeeehhhhhHHHHHHHHHHHHHHH
Confidence 34444555555543333322233222 2345567776654444555555555554444443
No 15
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=41.24 E-value=3.1e+02 Score=25.71 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7169 158 TTFKVGLFLGCFAILFAIILLRVWTE 183 (235)
Q Consensus 158 ~~F~~Gl~~G~~~~l~i~~~~~~~~~ 183 (235)
.....|+++|+++.++++++.....+
T Consensus 398 ~~l~~~~~~Gl~lg~~~~~l~e~ld~ 423 (444)
T TIGR03017 398 LNLVLSIFLGMLLGIGFAFLAELMDR 423 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556777777776666666555554
No 16
>KOG3312|consensus
Probab=41.19 E-value=1.2e+02 Score=25.34 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=34.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHhhhhHH------------HHHHHHHHHHHhccccc
Q psy7169 156 PWTTFKVGLFLGCFAILFAIILLRVWTERIVALSQILFKVGLFLGC------------FAILFAIILLRDGVRRN 218 (235)
Q Consensus 156 ~~~~F~~Gl~~G~~~~l~i~~~~~~~~~~~~~~~~~~~~~~iyrg~------------fl~il~~~~~~~~~rin 218 (235)
+..-+.+|+.+|.+...+...+-++|...-....+..|+ .+-+|+ --+|+..++|-..+|-|
T Consensus 84 Sl~kmKsmfaigl~ftal~~~fNSiFeGrVVAkLPF~Pi-s~iqglSHRnL~GdD~TDCSfiFLYiLCtmsiRqN 157 (186)
T KOG3312|consen 84 SLFKMKSMFAIGLAFTALLGMFNSIFEGRVVAKLPFTPI-SIIQGLSHRNLKGDDMTDCSFIFLYILCTMSIRQN 157 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcceeEEecCCcch-HHHhcccccCCCCCCccchHHHHHHHHHHHHHHHH
Confidence 345556777777777666666656666642223333332 222333 22345566777788877
No 17
>PF15383 TMEM237: Transmembrane protein 237
Probab=39.77 E-value=88 Score=27.98 Aligned_cols=49 Identities=10% Similarity=0.032 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHhhhhHHHHHHHHHH
Q psy7169 157 WTTFKVGLFLGCFAILFAIILLRVWTERIVALSQILFKVGLFLGCFAILFAII 209 (235)
Q Consensus 157 ~~~F~~Gl~~G~~~~l~i~~~~~~~~~~~~~~~~~~~~~~iyrg~fl~il~~~ 209 (235)
...|.=|++.|+++.-++.+....-.+ ......+++-|+.+..|+-..|
T Consensus 97 ~~~~~hG~LAG~al~h~i~v~~l~~~~----~~~~~~lL~~Y~~la~p~~~~f 145 (253)
T PF15383_consen 97 IGLFCHGFLAGFALWHIIVVYVLAGYQ----LSTVSNLLSQYSPLAYPAQSLF 145 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh----hhhhHHHHHHHHHHHHHHHHHH
Confidence 345566999999988776544332221 1122355777777777763333
No 18
>COG5409 EXS domain-containing protein [Signal transduction mechanisms]
Probab=39.64 E-value=13 Score=34.93 Aligned_cols=58 Identities=21% Similarity=0.115 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHhhhhHHHHHHHHHHH------HHhcccccc
Q psy7169 161 KVGLFLGCFAILFAIILLRVWTERIVALSQILFKVGLFLGCFAILFAIIL------LRDGVRRNE 219 (235)
Q Consensus 161 ~~Gl~~G~~~~l~i~~~~~~~~~~~~~~~~~~~~~~iyrg~fl~il~~~~------~~~~~rin~ 219 (235)
++|+-.|.+..+.+++....-.++ +......-++++|+|..+.....++ .|.+++|||
T Consensus 4 vv~~~~g~~l~l~~~i~~l~~~~~-~~~~~~~ill~lw~~~~l~~~~~~lf~v~~~i~~r~~iny 67 (384)
T COG5409 4 VVGLEKGVSLSLGLYIQNLLNVGE-PQSFIVLILLALWGGWILVFFLAFLFDVSCYILTRTPINY 67 (384)
T ss_pred eeeeeccccccHHHHHHHheeCCc-hHHHHHHHHHHHHhHHHHHHHHHHHhcCceeeEEeccccc
Confidence 467777888777766654432222 0111123468999997665544443 466888884
No 19
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=38.25 E-value=2e+02 Score=23.93 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q psy7169 163 GLFLGCFAILFAIILLRVWTE 183 (235)
Q Consensus 163 Gl~~G~~~~l~i~~~~~~~~~ 183 (235)
|+|+||.+.-+...++..+.+
T Consensus 37 ~L~~~M~~~y~~~~~lm~~sp 57 (155)
T PF10777_consen 37 YLCLAMYAAYLAVAALMYYSP 57 (155)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 777777776655544444443
No 20
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=38.10 E-value=39 Score=20.02 Aligned_cols=17 Identities=35% Similarity=0.634 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhHH
Q psy7169 60 LAFSEYYLSLILLQNYQ 76 (235)
Q Consensus 60 ~al~E~y~~L~lLk~Y~ 76 (235)
+.+.|||..|..++.|-
T Consensus 7 d~f~eFY~rlk~Ike~H 23 (28)
T PF12108_consen 7 DPFSEFYERLKEIKEYH 23 (28)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 45899999999999885
No 21
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=37.34 E-value=4.7e+02 Score=26.71 Aligned_cols=28 Identities=14% Similarity=0.294 Sum_probs=21.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7169 2 TFSMEKLAEATRKFSNLRNELKRSQEET 29 (235)
Q Consensus 2 ~Fy~eK~aE~~rr~~~L~~ql~~~~~~~ 29 (235)
.|..+++.+++.+++..+.+++++....
T Consensus 270 ~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 270 EFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4677888888888888888888876543
No 22
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=35.72 E-value=1.9e+02 Score=22.00 Aligned_cols=40 Identities=10% Similarity=0.194 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--cccccchhhHHHhhh
Q psy7169 159 TFKVGLFLGCFAILFAIILLRVWTE--RIVALSQILFKVGLF 198 (235)
Q Consensus 159 ~F~~Gl~~G~~~~l~i~~~~~~~~~--~~~~~~~~~~~~~iy 198 (235)
.+.+|+++|..+.|.+++++....- ++.+.+..|.++.+-
T Consensus 9 n~~S~vli~GiiLL~~aCIfAfidfsK~~~~~~~~wRalSii 50 (92)
T PF05767_consen 9 NYFSGVLIGGIILLIAACIFAFIDFSKNTKPTDYTWRALSII 50 (92)
T ss_pred hccchHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHH
Confidence 3456888877776776666663322 332455678775543
No 23
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=35.71 E-value=36 Score=24.14 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7169 160 FKVGLFLGCFAILFAIILL 178 (235)
Q Consensus 160 F~~Gl~~G~~~~l~i~~~~ 178 (235)
|..|+++|..+-.++.+++
T Consensus 1 F~~g~l~Ga~~Ga~~glL~ 19 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAAGLLF 19 (74)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 6778888877766655543
No 24
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=35.09 E-value=68 Score=24.64 Aligned_cols=57 Identities=19% Similarity=0.187 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHhccCcHHHHHhHcCCCCCCCCCCc----hhHHHHHHHHHHHHHHHH
Q psy7169 116 KDINHLISETEATVTSELEEGDRQKAMKRLRVPPLGEQQSP----WTTFKVGLFLGCFAILFA 174 (235)
Q Consensus 116 ~~l~~li~~ve~ly~~~f~~gdrk~A~~~Lr~~~~~~~~~~----~~~F~~Gl~~G~~~~l~i 174 (235)
+.+..-++++|++=..+...=|... .-|.+.|.+|..+. .+.++.|+.+|..++.++
T Consensus 33 ~pi~eqi~kLe~~addl~nsLdP~~--~~l~S~PgREg~~~~AG~~tn~fyGf~igL~i~~lv 93 (97)
T PF05440_consen 33 DPINEQIDKLEKAADDLVNSLDPRT--PPLNSFPGREGTYYIAGIFTNMFYGFIIGLVIAGLV 93 (97)
T ss_pred hHHHHHHHHHHHHHHHHHhccCCCC--CccccCCCCccceeehhhhhhHHHHHHHHHHHHHHH
Confidence 4455555555554433332222221 12445566676654 344445555555544333
No 25
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=34.24 E-value=95 Score=24.05 Aligned_cols=69 Identities=19% Similarity=0.083 Sum_probs=35.5
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHhccCcHHHHHhHcCCCCCCCCCC----chhHHHHHHHHHHHHHHHHHHHHH
Q psy7169 109 ISHFYVNKDINHLISETEATVTSELEEGDRQKAMKRLRVPPLGEQQS----PWTTFKVGLFLGCFAILFAIILLR 179 (235)
Q Consensus 109 ~~~F~~~~~l~~li~~ve~ly~~~f~~gdrk~A~~~Lr~~~~~~~~~----~~~~F~~Gl~~G~~~~l~i~~~~~ 179 (235)
..-|.+-+.+..-++++|.+-..+...=|... --|-+.|.+|..+ ....++-|+.+|..++.++++++.
T Consensus 27 dvi~ldv~pi~Eqi~kLe~~vddl~~sldPst--p~lnS~PgRegv~~~aG~~tna~yGfviGl~i~aLlAlil~ 99 (108)
T COG4062 27 DVIFLDVDPIEEQIKKLETLVDDLENSLDPST--PPLNSFPGREGVYATAGYLTNAFYGFVIGLGIMALLALILG 99 (108)
T ss_pred ceEEEeccHHHHHHHHHHHHHHHHHhccCCCC--CCcccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555666667777765544433222211 0111223344333 245677788888888655555443
No 26
>KOG1281|consensus
Probab=34.15 E-value=23 Score=35.34 Aligned_cols=31 Identities=32% Similarity=0.305 Sum_probs=28.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhcCCCCc
Q psy7169 68 SLILLQNYQNLNFTGFRKILKKHDKLLNVDV 98 (235)
Q Consensus 68 ~L~lLk~Y~~LN~tgF~KIlKK~DK~~~~~~ 98 (235)
.+..+++|..+|+++|.|+.||.||..+.+.
T Consensus 10 ~l~~~~~~~~~~~~~ll~~p~~~~~~l~~~~ 40 (586)
T KOG1281|consen 10 TLLQYRSLLVLNRTPLLLLPKKLDKLLHSSE 40 (586)
T ss_pred HHHHhhhhheeehhhhhhcchhhhhhcCCcH
Confidence 7788999999999999999999999998874
No 27
>PRK14163 heat shock protein GrpE; Provisional
Probab=33.72 E-value=2.6e+02 Score=24.47 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7169 6 EKLAEATRKFSNLRNELKRSQEE 28 (235)
Q Consensus 6 eK~aE~~rr~~~L~~ql~~~~~~ 28 (235)
+++.++..++.+|++++.++.+.
T Consensus 47 ~~l~~l~~e~~el~d~~lR~~AE 69 (214)
T PRK14163 47 AQLDQVRTALGERTADLQRLQAE 69 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777766666544
No 28
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=33.56 E-value=53 Score=23.55 Aligned_cols=20 Identities=10% Similarity=0.379 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q psy7169 164 LFLGCFAILFAIILLRVWTE 183 (235)
Q Consensus 164 l~~G~~~~l~i~~~~~~~~~ 183 (235)
+++|+|++.+..++|.+|..
T Consensus 6 iLi~ICVaii~lIlY~iYnr 25 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNR 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 57889999998888887765
No 29
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=33.40 E-value=49 Score=25.42 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=24.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhccccccchhh
Q psy7169 156 PWTTFKVGLFLGCFAILFAIILLRVWTERIVALSQIL 192 (235)
Q Consensus 156 ~~~~F~~Gl~~G~~~~l~i~~~~~~~~~~~~~~~~~~ 192 (235)
.+-.+-.-+|+|+++++++.+++..|.+|+ ....|
T Consensus 55 d~e~we~~~f~~~~~~~v~~~~~~~y~PD~--~i~~W 89 (105)
T PF10183_consen 55 DWEGWELPFFFGFSGSLVFGGVFLAYKPDT--SIQTW 89 (105)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHH
Confidence 355666777788888888888888888873 33445
No 30
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=33.11 E-value=2.9e+02 Score=23.10 Aligned_cols=77 Identities=13% Similarity=0.107 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhcCCCCcchhHHHhhhhcCCCCChhhHHHHHHHHHHHHHHHhc
Q psy7169 55 LQELKLAFSEYYLSLILLQNYQNLNFTGFRKILKKHDKLLNVDVGAKWRAEHVDISHFYVNKDINHLISETEATVTSELE 134 (235)
Q Consensus 55 ~~~Lk~al~E~y~~L~lLk~Y~~LN~tgF~KIlKK~DK~~~~~~~~~~~~~~v~~~~F~~~~~l~~li~~ve~ly~~~f~ 134 (235)
.+.+-+.+.+-=..+...+.|-.-=.-+-.|++.||......+....-..+..++ ..+.++.+....++.|.+.+.
T Consensus 110 ~~~I~~~v~~~P~~l~~a~~Fl~~yLp~~~~l~~kY~~l~~~~~~~~~~~~~l~e----~~~~L~~l~~~f~~~~~~l~~ 185 (199)
T PF10112_consen 110 ARRIFKYVEKDPERLTQARKFLYYYLPTAVKLLEKYAELESQPVKSEEIKQSLEE----IEETLDTLNQAFEKDLDKLLE 185 (199)
T ss_pred HHHHHHHHHHCHHhHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCChhHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666777788888888888999999998776544333222221110 123566666666666666655
Q ss_pred c
Q psy7169 135 E 135 (235)
Q Consensus 135 ~ 135 (235)
+
T Consensus 186 ~ 186 (199)
T PF10112_consen 186 D 186 (199)
T ss_pred h
Confidence 4
No 31
>PRK14155 heat shock protein GrpE; Provisional
Probab=32.87 E-value=2e+02 Score=24.95 Aligned_cols=80 Identities=11% Similarity=0.061 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHhHHH------
Q psy7169 6 EKLAEATRKFSNLRNELKRSQEETMKSAKA--KRKSALLLSRHKTDVPARKLQELKLAFSEYYLSLILLQNYQN------ 77 (235)
Q Consensus 6 eK~aE~~rr~~~L~~ql~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Lk~al~E~y~~L~lLk~Y~~------ 77 (235)
++++++..+++++++++.++.+...+-.++ ++.. .........+-..|.+.+..|..-.+...
T Consensus 20 ~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e---------~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~~~~~ 90 (208)
T PRK14155 20 QEIEALKAEVAALKDQALRYAAEAENTKRRAEREMN---------DARAYAIQKFARDLLGAADNLGRATAASPKDSADP 90 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhhHHhhHHHHHhcccccccch
Confidence 456667777777777776665443221111 1110 00111224455555555555554322211
Q ss_pred ---HHHHHHHHHHHhhhhcC
Q psy7169 78 ---LNFTGFRKILKKHDKLL 94 (235)
Q Consensus 78 ---LN~tgF~KIlKK~DK~~ 94 (235)
-=+.|+.-|.|++.+++
T Consensus 91 ~~~~i~~Gvemi~k~~~~~L 110 (208)
T PRK14155 91 AVKNFIIGVEMTEKELLGAF 110 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 11367777777777765
No 32
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=32.81 E-value=1.8e+02 Score=27.77 Aligned_cols=65 Identities=20% Similarity=0.151 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhccccc-cchhhHHHhhhhHHHHHHHHHHHHHhccccccccCCCC
Q psy7169 161 KVGLFLGCFAILFAIILLR-VWTERIVA-LSQILFKVGLFLGCFAILFAIILLRDGVRRNELKEGNS 225 (235)
Q Consensus 161 ~~Gl~~G~~~~l~i~~~~~-~~~~~~~~-~~~~~~~~~iyrg~fl~il~~~~~~~~~rin~~~~~~~ 225 (235)
...=|++++++-.+..++. ++....+. ......++-..+|+.|++.-.+++|.+.|.+......+
T Consensus 241 ~~yGFil~f~aT~va~~yh~~~~~~aPyp~~s~~klLg~vGgi~LliG~~gl~~~~~R~d~~~~~~~ 307 (389)
T PRK15033 241 TFYGFMLCFAATVVATLYHYVLGWHAPYPFFSLPVLLGTLGGIGLLIGPAGLLWLNLRRHPLHGDAA 307 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 3333455666666655555 33323222 12234556677888888887789999999865555544
No 33
>PRK14140 heat shock protein GrpE; Provisional
Probab=32.13 E-value=2.2e+02 Score=24.37 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7169 6 EKLAEATRKFSNLRNELKRSQEE 28 (235)
Q Consensus 6 eK~aE~~rr~~~L~~ql~~~~~~ 28 (235)
++++++..++++|++++.+..+.
T Consensus 44 ~~i~~l~~ei~elkd~~lR~~Ae 66 (191)
T PRK14140 44 AKIAELEAKLDELEERYLRLQAD 66 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666655544
No 34
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=31.56 E-value=2.2e+02 Score=22.29 Aligned_cols=29 Identities=17% Similarity=-0.111 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhccccccchhhHH
Q psy7169 166 LGCFAILFAIILLRVWTERIVALSQILFK 194 (235)
Q Consensus 166 ~G~~~~l~i~~~~~~~~~~~~~~~~~~~~ 194 (235)
+.+++++++.+++.....-+......|++
T Consensus 51 li~G~~li~~g~l~~~~~i~~~~~~~~~l 79 (115)
T PF05915_consen 51 LIFGTVLIIIGLLLFFGHIDGDRDRGWAL 79 (115)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCcccchH
Confidence 34444555555544333311234445544
No 35
>PRK14139 heat shock protein GrpE; Provisional
Probab=31.27 E-value=2.5e+02 Score=23.89 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy7169 6 EKLAEATRKFSNLRNELKRSQEET 29 (235)
Q Consensus 6 eK~aE~~rr~~~L~~ql~~~~~~~ 29 (235)
++++++..++++|++++.+..+..
T Consensus 39 ~~l~~le~e~~elkd~~lR~~Aef 62 (185)
T PRK14139 39 AELAEAEAKAAELQDSFLRAKAET 62 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777776665543
No 36
>PRK10633 hypothetical protein; Provisional
Probab=31.18 E-value=1.3e+02 Score=22.29 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=13.1
Q ss_pred cchhhHHHhhhhHHHHHHHHHHHHH
Q psy7169 188 LSQILFKVGLFLGCFAILFAIILLR 212 (235)
Q Consensus 188 ~~~~~~~~~iyrg~fl~il~~~~~~ 212 (235)
.-|.|..+.+--|+.++++.+|++.
T Consensus 41 GlP~WF~~sCi~~p~lfi~l~~~~V 65 (80)
T PRK10633 41 GLPHWFEMACLLLPLLFILLCWLMV 65 (80)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455665655555555554444443
No 37
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=30.72 E-value=2e+02 Score=21.78 Aligned_cols=41 Identities=7% Similarity=0.131 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--hccc-cccchhhHHHhhh
Q psy7169 158 TTFKVGLFLGCFAILFAIILLRVW--TERI-VALSQILFKVGLF 198 (235)
Q Consensus 158 ~~F~~Gl~~G~~~~l~i~~~~~~~--~~~~-~~~~~~~~~~~iy 198 (235)
...++|+++|.-+.|.+++++... ..++ .+.+..|.++.+-
T Consensus 8 ~ny~s~vli~GIiLL~~ACIFAfidFSK~~s~~~~~~wRalSii 51 (91)
T PHA02680 8 KSYYSGVLICGVLLLTAACVFAFVDFSKNTSNVTDYVWRALSVT 51 (91)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhhccCCCCcchhHHHHHHH
Confidence 345677887766666666666532 2222 3457778776543
No 38
>PF04930 FUN14: FUN14 family; InterPro: IPR007014 This is a family of short proteins found in eukaryotes and some archaea. Although the function of these proteins is not known they may contain transmembrane helices.
Probab=30.54 E-value=50 Score=24.94 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=10.7
Q ss_pred CCchhHHHHHHHHHH
Q psy7169 154 QSPWTTFKVGLFLGC 168 (235)
Q Consensus 154 ~~~~~~F~~Gl~~G~ 168 (235)
.+....|.+|+++|+
T Consensus 85 ~~~~~gF~~Gf~lG~ 99 (100)
T PF04930_consen 85 LPFSAGFLAGFLLGF 99 (100)
T ss_pred ccHhHHHHHHHHHHc
Confidence 344678888888875
No 39
>PF11143 DUF2919: Protein of unknown function (DUF2919); InterPro: IPR021318 This bacterial family of proteins has no known function. Some members are annotated as YfeZ however this cannot be confirmed.
Probab=29.95 E-value=1.4e+02 Score=24.50 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=15.6
Q ss_pred chhHHHHHHHHHHHHHHHH
Q psy7169 156 PWTTFKVGLFLGCFAILFA 174 (235)
Q Consensus 156 ~~~~F~~Gl~~G~~~~l~i 174 (235)
....|..|+.+|+-.+++.
T Consensus 52 ~~~~f~lgL~~g~Pall~~ 70 (149)
T PF11143_consen 52 DHSDFYLGLAAGLPALLLM 70 (149)
T ss_pred CchHHHHHHHHhHHHHHHH
Confidence 3678999999998877776
No 40
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=29.78 E-value=3.4e+02 Score=22.83 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhcCCC
Q psy7169 57 ELKLAFSEYYLSLILLQNYQNLNFTGFRKILKKHDKLLNV 96 (235)
Q Consensus 57 ~Lk~al~E~y~~L~lLk~Y~~LN~tgF~KIlKK~DK~~~~ 96 (235)
.|...=.++--.+..+=.++.+|+++|.|.++-|=+....
T Consensus 115 ~l~q~~~~~eEtv~~~ieqqk~~r~e~qk~~~~yv~~~k~ 154 (165)
T PF09602_consen 115 LLSQISKQYEETVKQLIEQQKLTREEWQKVLDAYVEQAKS 154 (165)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444455667788999999999999888655433
No 41
>PHA02898 virion envelope protein; Provisional
Probab=29.25 E-value=2.4e+02 Score=21.36 Aligned_cols=38 Identities=5% Similarity=-0.012 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HhccccccchhhHHHhhh
Q psy7169 161 KVGLFLGCFAILFAIILLRV--WTERIVALSQILFKVGLF 198 (235)
Q Consensus 161 ~~Gl~~G~~~~l~i~~~~~~--~~~~~~~~~~~~~~~~iy 198 (235)
.+|+++|.-+.|.+++++.. +..++.+.+..|.++.+-
T Consensus 11 ~s~vli~GIiLL~~ACIfAfidfSK~~~~~~~~wRalSii 50 (92)
T PHA02898 11 PSYVVAFGIILLIVACICAYIELSKSEKPADSALRSISII 50 (92)
T ss_pred cchHHHHHHHHHHHHHHHheehhhcCCCcchhHHHHHHHH
Confidence 35666655555555555552 222333346778776543
No 42
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=29.12 E-value=52 Score=23.96 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=18.6
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q psy7169 2 TFSMEKLAEATRKFSNLRNEL 22 (235)
Q Consensus 2 ~Fy~eK~aE~~rr~~~L~~ql 22 (235)
.+|.+|..|+..|.+.|++++
T Consensus 50 ~~yr~ki~eY~~Rae~Lk~~v 70 (75)
T cd02682 50 LIYEQMINEYKRRIEVLEKQN 70 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 478999999999999999875
No 43
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=27.94 E-value=93 Score=19.76 Aligned_cols=20 Identities=25% Similarity=0.507 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy7169 161 KVGLFLGCFAILFAIILLRV 180 (235)
Q Consensus 161 ~~Gl~~G~~~~l~i~~~~~~ 180 (235)
+..++.|.-+++..+++++.
T Consensus 16 RTSLy~GlLlifvl~vLFss 35 (39)
T PRK00753 16 RTSLYLGLLLVFVLGILFSS 35 (39)
T ss_pred hhhHHHHHHHHHHHHHHHHh
Confidence 56788888888877777763
No 44
>PRK14161 heat shock protein GrpE; Provisional
Probab=27.43 E-value=2.9e+02 Score=23.33 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7169 6 EKLAEATRKFSNLRNELKRSQEE 28 (235)
Q Consensus 6 eK~aE~~rr~~~L~~ql~~~~~~ 28 (235)
++++++..+++++++++.+..+.
T Consensus 26 ~ei~~l~~e~~elkd~~lR~~Ae 48 (178)
T PRK14161 26 PEITALKAEIEELKDKLIRTTAE 48 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777666544
No 45
>CHL00038 psbL photosystem II protein L
Probab=26.94 E-value=1.1e+02 Score=19.36 Aligned_cols=20 Identities=20% Similarity=0.471 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy7169 161 KVGLFLGCFAILFAIILLRV 180 (235)
Q Consensus 161 ~~Gl~~G~~~~l~i~~~~~~ 180 (235)
+..++.|.-+++..+++++.
T Consensus 15 RTSLy~GLLlifvl~vlfss 34 (38)
T CHL00038 15 RTSLYWGLLLIFVLAVLFSN 34 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 66788888888877777763
No 46
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=26.84 E-value=3.2e+02 Score=21.56 Aligned_cols=62 Identities=6% Similarity=0.171 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHHHhccC--cHHHHHhHcCCCCCCCCCC-chhHHHHHHHHHHHHHHHHHHHHH
Q psy7169 116 KDINHLISETEATVTSELEEG--DRQKAMKRLRVPPLGEQQS-PWTTFKVGLFLGCFAILFAIILLR 179 (235)
Q Consensus 116 ~~l~~li~~ve~ly~~~f~~g--drk~A~~~Lr~~~~~~~~~-~~~~F~~Gl~~G~~~~l~i~~~~~ 179 (235)
..+..+++++..+.++.-++. +.+....+++.- +.+.. ...+...|...++++++.+..++.
T Consensus 21 nRl~ri~dR~R~L~~~~~~~~~~~~~~~~~el~~L--~rR~~li~~ai~~~~~s~ll~~l~i~~lf~ 85 (130)
T PF11026_consen 21 NRLARIVDRIRQLHDELRDAPDEEERRLRRELRIL--RRRARLIRRAITLATLSALLVCLVILLLFL 85 (130)
T ss_pred HHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777788888877744332 232234444431 11111 234444555555555555544444
No 47
>PF00858 ASC: Amiloride-sensitive sodium channel; InterPro: IPR001873 The apical membrane of many tight epithelia contains sodium channels that are primarily characterised by their high affinity to the diuretic blocker amiloride [, , , ]. These channels mediate the first step of active sodium reabsorption essential for the maintenance of body salt and water homeostasis []. In vertebrates, the channels control reabsorption of sodium in kidney, colon, lung and sweat glands; they also play a role in taste perception. Members of the epithelial Na+ channel (ENaC) family fall into four subfamilies, termed alpha, beta, gamma and delta []. The proteins exhibit the same apparent topology, each with two transmembrane (TM) spanning segments, separated by a large extracellular loop. In most ENaC proteins studied to date, the extracellular domains are highly conserved and contain numerous cysteine residues, with flanking C-terminal amphipathic TM regions, postulated to contribute to the formation of the hydrophilic pores of the oligomeric channel protein complexes. It is thought that the well-conserved extracellular domains serve as receptors to control the activities of the channels. Vertebrate ENaC proteins are similar to degenerins of Caenorhabditis elegans []: deg-1, del-1, mec-4, mec-10 and unc-8. These proteins can be mutated to cause neuronal degradation, and are also thought to form sodium channels. Structurally, the proteins that belong to this family consist of about 510 to 920 amino acid residues. They are made of an intracellular N terminus region followed by a transmembrane domain, a large extracellular loop, a second transmembrane segment and a C-terminal intracellular tail [].; GO: 0005272 sodium channel activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 2QTS_B 3S3W_C 3IJ4_A 3S3X_A 3HGC_A 2K2B_A.
Probab=26.80 E-value=65 Score=29.57 Aligned_cols=18 Identities=39% Similarity=0.606 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy7169 162 VGLFLGCFAILFAIILLR 179 (235)
Q Consensus 162 ~Gl~~G~~~~l~i~~~~~ 179 (235)
.|||+|++++-++-+++.
T Consensus 421 ~gLflG~S~is~~E~i~~ 438 (439)
T PF00858_consen 421 LGLFLGASVISLVEIIYF 438 (439)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHeee
Confidence 489999999999887753
No 48
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=26.54 E-value=99 Score=30.43 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=20.0
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHhccccccchhhHHHhhhhHHHHHH
Q psy7169 161 KVGLFLGCFA--ILFAIILLRVWTERIVALSQILFKVGLFLGCFAIL 205 (235)
Q Consensus 161 ~~Gl~~G~~~--~l~i~~~~~~~~~~~~~~~~~~~~~~iyrg~fl~i 205 (235)
-=|+++++++ ++++.+.|.+|...... .-|-+-+||..++.+
T Consensus 130 CeGllislafKLliLlig~WAlf~R~~~a---~lPRif~fRa~ll~L 173 (505)
T PF06638_consen 130 CEGLLISLAFKLLILLIGTWALFFRRPRA---DLPRIFVFRALLLVL 173 (505)
T ss_pred ccceeHHHHHHHHHHHHHHHHHhcCcccC---CCchhHHHHHHHHHH
Confidence 3466666665 33344445555543111 112233677775554
No 49
>PHA03048 IMV membrane protein; Provisional
Probab=25.85 E-value=2.6e+02 Score=21.25 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--ccccccchhhHHHhh
Q psy7169 160 FKVGLFLGCFAILFAIILLRVWT--ERIVALSQILFKVGL 197 (235)
Q Consensus 160 F~~Gl~~G~~~~l~i~~~~~~~~--~~~~~~~~~~~~~~i 197 (235)
..+|+++|.-+.|.+++++.... .+. +.+..|.++.+
T Consensus 10 y~S~vli~GIiLL~~aCIfAfidfsK~k-~~~~~wRalsi 48 (93)
T PHA03048 10 YFSTALIGGIILLAASCIFAFVDFSKNK-ATVTVWRALSG 48 (93)
T ss_pred ccchHHHHHHHHHHHHHHHhhhhhhcCC-CcchhHHHHHH
Confidence 34677776666666666655322 222 34567877544
No 50
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=25.56 E-value=2.3e+02 Score=21.26 Aligned_cols=23 Identities=4% Similarity=0.011 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhc
Q psy7169 161 KVGLFLGCFAILFAIILLR-VWTE 183 (235)
Q Consensus 161 ~~Gl~~G~~~~l~i~~~~~-~~~~ 183 (235)
..-+++|.+++.++..+-. +..+
T Consensus 9 ~GN~lMglGmv~Mv~gigysi~~~ 32 (89)
T PF10762_consen 9 LGNVLMGLGMVVMVGGIGYSILSQ 32 (89)
T ss_pred HhhHHHHHhHHHHHHhHHHHHHHh
Confidence 3447788888888776644 4443
No 51
>PF06631 DUF1154: Protein of unknown function (DUF1154); InterPro: IPR009535 This entry represents group a 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta conserved site.; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0006629 lipid metabolic process
Probab=25.52 E-value=47 Score=22.15 Aligned_cols=16 Identities=38% Similarity=0.571 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhhhcCC
Q psy7169 80 FTGFRKILKKHDKLLN 95 (235)
Q Consensus 80 ~tgF~KIlKK~DK~~~ 95 (235)
..||.|++||.+|=+.
T Consensus 17 ~K~y~Kl~KKq~KEl~ 32 (47)
T PF06631_consen 17 HKAYVKLLKKQQKELE 32 (47)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4789999999998653
No 52
>COG5393 Predicted membrane protein [Function unknown]
Probab=25.22 E-value=2.4e+02 Score=22.54 Aligned_cols=23 Identities=17% Similarity=0.155 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q psy7169 157 WTTFKVGLFLGCFAILFAIILLR 179 (235)
Q Consensus 157 ~~~F~~Gl~~G~~~~l~i~~~~~ 179 (235)
...|..-++.|..+++...++.+
T Consensus 45 anll~lllm~gLtl~fa~~~lms 67 (131)
T COG5393 45 ANLLQLLLMAGLTLLFAAFGLMS 67 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777766665554
No 53
>PRK10692 hypothetical protein; Provisional
Probab=24.98 E-value=3.1e+02 Score=20.75 Aligned_cols=24 Identities=4% Similarity=0.109 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhc
Q psy7169 160 FKVGLFLGCFAILFAIILLR-VWTE 183 (235)
Q Consensus 160 F~~Gl~~G~~~~l~i~~~~~-~~~~ 183 (235)
...-+++|.++++++..+-. +...
T Consensus 8 ~~GN~lMglGmv~Mv~gigysi~~~ 32 (92)
T PRK10692 8 LLGNVLMGLGLVVMVVGVGYSILNQ 32 (92)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34447788888888776654 4443
No 54
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=24.00 E-value=3.2e+02 Score=20.55 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=20.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7169 156 PWTTFKVGLFLGCFAILFAIILLRVWTE 183 (235)
Q Consensus 156 ~~~~F~~Gl~~G~~~~l~i~~~~~~~~~ 183 (235)
+...++..+++|+.++=++++++.+...
T Consensus 29 ~sP~W~~~~m~~lm~~Gl~WlvvyYl~~ 56 (87)
T PRK02251 29 SNPRWFVPLFVALMIIGLIWLVVYYLSN 56 (87)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhhC
Confidence 4567788999998888888777664433
No 55
>PF05493 ATP_synt_H: ATP synthase subunit H ; InterPro: IPR008389 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit E (or subunit M9.2) found in the V0 complex of certain V-ATPases. The V0 complex contains subunit C (proton-conducting pore), as well as accessory subunits that function in assembly, targeting or regulation of the V-ATPase complex. Subunit E is an extremely hydrophobic protein of approximately 9 kDa, which may be required for assembly of vacuolar ATPases []. The amino terminal domain of subunit E interacts with the H subunit and is required fo V-ATPase function []. Different isoforms of this subunit exist sometimes annotated as E1 and E2 also a neuron-specific isoform, NM9.2 has been identified []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033179 proton-transporting V-type ATPase, V0 domain
Probab=23.96 E-value=45 Score=23.55 Aligned_cols=23 Identities=9% Similarity=-0.062 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcccccc----ccCCCCc
Q psy7169 204 ILFAIILLRDGVRRNE----LKEGNSQ 226 (235)
Q Consensus 204 ~il~~~~~~~~~rin~----~~~~~~~ 226 (235)
-..++|++|.++..-- |.|..|+
T Consensus 37 t~~CcwL~W~~~ylaQmnPLi~P~~~~ 63 (65)
T PF05493_consen 37 TAVCCWLFWACTYLAQMNPLIGPQLSN 63 (65)
T ss_pred HHHHHHHHHHHHHHHHhCcccCCcccC
Confidence 3588999999988774 4455554
No 56
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=23.88 E-value=1e+02 Score=25.28 Aligned_cols=55 Identities=11% Similarity=0.129 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHhhhhHHHHHHHHHHHHHhcccccccc
Q psy7169 157 WTTFKVGLFLGCFAILFAIILLRVWTERIVALSQILFKVGLFLGCFAILFAIILLRDGVRRNELK 221 (235)
Q Consensus 157 ~~~F~~Gl~~G~~~~l~i~~~~~~~~~~~~~~~~~~~~~~iyrg~fl~il~~~~~~~~~rin~~~ 221 (235)
...++.++.+.+.+++++.++.......+ . =||=+.++.+..+++...+.++...
T Consensus 15 ~~~~~~~~i~~ll~~l~~~~~~Y~r~r~~---t-------KyRDL~II~~L~ll~l~giq~~~y~ 69 (149)
T PF11694_consen 15 NDYLRYILIIILLLVLIFFFIKYLRNRLD---T-------KYRDLSIIALLLLLLLIGIQYSDYQ 69 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCc---c-------hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555665555444444433333333321 1 2455555555555555556666333
No 57
>PF14851 FAM176: FAM176 family
Probab=23.55 E-value=83 Score=26.10 Aligned_cols=23 Identities=17% Similarity=0.223 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q psy7169 157 WTTFKVGLFLGCFAILFAIILLR 179 (235)
Q Consensus 157 ~~~F~~Gl~~G~~~~l~i~~~~~ 179 (235)
...|..|+.+|..+.|++.++=.
T Consensus 23 aLYFv~gVC~GLlLtLcllV~ri 45 (153)
T PF14851_consen 23 ALYFVSGVCAGLLLTLCLLVIRI 45 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 78899999999999998876544
No 58
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=23.21 E-value=3.3e+02 Score=20.47 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=20.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7169 156 PWTTFKVGLFLGCFAILFAIILLRVWTE 183 (235)
Q Consensus 156 ~~~~F~~Gl~~G~~~~l~i~~~~~~~~~ 183 (235)
+....+..+++|+.++=++++++.+...
T Consensus 28 ~sp~W~~~~m~glm~~GllWlvvyYl~~ 55 (87)
T PRK00159 28 PSSVWYVVLMLGLMLIGLAWLVVNYLAG 55 (87)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4567788899988888887777664443
No 59
>KOG0999|consensus
Probab=23.03 E-value=6.1e+02 Score=25.76 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHhHHHHHH
Q psy7169 53 RKLQELKLAFSEY-YLSLILLQNYQNLNF 80 (235)
Q Consensus 53 ~~~~~Lk~al~E~-y~~L~lLk~Y~~LN~ 80 (235)
.....|+..+.|+ ++.-.+|..|.+|--
T Consensus 149 ~qR~rlr~elKe~KfRE~RllseYSELEE 177 (772)
T KOG0999|consen 149 DQRRRLRDELKEYKFREARLLSEYSELEE 177 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788888876 678888999988854
No 60
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=22.84 E-value=3.5e+02 Score=20.61 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy7169 52 ARKLQELKLAFSEYYLSLILL 72 (235)
Q Consensus 52 ~~~~~~Lk~al~E~y~~L~lL 72 (235)
.++...|+..+.|.-..+..+
T Consensus 64 ~~dv~~L~l~l~el~G~~~~l 84 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELKEL 84 (106)
T ss_pred HHHHHHHHHHHHHHHhHHHHH
Confidence 345556666666655555543
No 61
>PRK14144 heat shock protein GrpE; Provisional
Probab=22.44 E-value=4.2e+02 Score=22.88 Aligned_cols=39 Identities=18% Similarity=0.045 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHhhhhcC
Q psy7169 56 QELKLAFSEYYLSLILLQNYQNL-----NFTGFRKILKKHDKLL 94 (235)
Q Consensus 56 ~~Lk~al~E~y~~L~lLk~Y~~L-----N~tgF~KIlKK~DK~~ 94 (235)
..+-.+|.+.+..|..-.+...- =..|+.=|.|++.+.+
T Consensus 95 ~~~~~~LLpV~DnLerAl~~~~~~~~~~i~~Gv~mi~k~l~~~L 138 (199)
T PRK14144 95 EKLISALLPVVDSLEQALQLADKNSDPSMHEGLELTMKLFLDAL 138 (199)
T ss_pred HHHHHHHhhHHhHHHHHHHcccccchhHHHHHHHHHHHHHHHHH
Confidence 44555555555555543222110 1467777777777665
No 62
>PRK14143 heat shock protein GrpE; Provisional
Probab=22.02 E-value=5.6e+02 Score=22.67 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7169 7 KLAEATRKFSNLRNELKRSQEE 28 (235)
Q Consensus 7 K~aE~~rr~~~L~~ql~~~~~~ 28 (235)
+++++..++++|++++.++.+.
T Consensus 75 el~~l~~e~~elkd~~lR~~Ad 96 (238)
T PRK14143 75 ELESLKQELEELNSQYMRIAAD 96 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666555443
No 63
>PF14241 DUF4341: Domain of unknown function (DUF4341)
Probab=21.60 E-value=1.2e+02 Score=20.91 Aligned_cols=21 Identities=33% Similarity=0.789 Sum_probs=17.4
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q psy7169 156 PWTTFKVGLFLGCFAILFAII 176 (235)
Q Consensus 156 ~~~~F~~Gl~~G~~~~l~i~~ 176 (235)
++..+..|+++|.+.+++.+.
T Consensus 2 p~~~l~GG~lIGla~~~ll~~ 22 (62)
T PF14241_consen 2 PWSALIGGLLIGLAASLLLLL 22 (62)
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999877654
No 64
>KOG4466|consensus
Probab=21.48 E-value=4.4e+02 Score=24.09 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=24.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7169 2 TFSMEKLAEATRKFSNLRNELKRSQEE 28 (235)
Q Consensus 2 ~Fy~eK~aE~~rr~~~L~~ql~~~~~~ 28 (235)
+|+..|...++.|+..|+.||+.+.+.
T Consensus 31 ~f~elkeq~yk~kLa~Lq~~Leel~~g 57 (291)
T KOG4466|consen 31 QFSELKEQMYKDKLAQLQAQLEELGQG 57 (291)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 589999999999999999999998643
No 65
>KOG1162|consensus
Probab=21.46 E-value=92 Score=31.47 Aligned_cols=23 Identities=43% Similarity=0.457 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q psy7169 157 WTTFKVGLFLGCFAILFAIILLR 179 (235)
Q Consensus 157 ~~~F~~Gl~~G~~~~l~i~~~~~ 179 (235)
+++|.+|+++|+++++.+.+.+.
T Consensus 227 ~~~f~~g~~~~l~val~~~~~~~ 249 (617)
T KOG1162|consen 227 STGFFVGCGIGLSVALVALIYLR 249 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999998887766
No 66
>COG5570 Uncharacterized small protein [Function unknown]
Probab=21.40 E-value=2.8e+02 Score=18.99 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy7169 6 EKLAEATRKFSNLRNELKRSQEET 29 (235)
Q Consensus 6 eK~aE~~rr~~~L~~ql~~~~~~~ 29 (235)
..++|+.+|...|+.++++..+.+
T Consensus 5 shl~eL~kkHg~le~ei~ea~n~P 28 (57)
T COG5570 5 SHLAELEKKHGNLEREIQEAMNSP 28 (57)
T ss_pred HHHHHHHHhhchHHHHHHHHhcCC
Confidence 468899999999999888876543
No 67
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=21.31 E-value=1e+02 Score=19.49 Aligned_cols=20 Identities=20% Similarity=0.491 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy7169 161 KVGLFLGCFAILFAIILLRV 180 (235)
Q Consensus 161 ~~Gl~~G~~~~l~i~~~~~~ 180 (235)
++.++.|.-+++.+.++++.
T Consensus 14 RTSLY~GLllifvl~vLFss 33 (37)
T PF02419_consen 14 RTSLYWGLLLIFVLAVLFSS 33 (37)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhhh
Confidence 45677777777777777663
No 68
>PRK14151 heat shock protein GrpE; Provisional
Probab=21.27 E-value=4.5e+02 Score=22.11 Aligned_cols=23 Identities=9% Similarity=0.303 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7169 6 EKLAEATRKFSNLRNELKRSQEE 28 (235)
Q Consensus 6 eK~aE~~rr~~~L~~ql~~~~~~ 28 (235)
++++++..+++++++++.++.+.
T Consensus 27 ~~i~~le~e~~el~d~~lR~~Ae 49 (176)
T PRK14151 27 ARVQELEEQLAAAKDQSLRAAAD 49 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777776666544
No 69
>PF09675 Chlamy_scaf: Chlamydia-phage Chp2 scaffold (Chlamy_scaf); InterPro: IPR014131 Members of this entry are encoded by genes in chlamydiaphage such as Vp3. These viruses have around eight genes and infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein is annotated as VP3 or structural protein (as if a protein of mature viral particles), however, it is displaced from procapsids as DNA is packaged, and therefore is more correctly described as a scaffolding protein.
Probab=21.14 E-value=49 Score=26.03 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=22.7
Q ss_pred HHHHHhhhhcCCCCcchhHHHhhhhcCCCCChhhHHHHHHHHHHHHHH
Q psy7169 84 RKILKKHDKLLNVDVGAKWRAEHVDISHFYVNKDINHLISETEATVTS 131 (235)
Q Consensus 84 ~KIlKK~DK~~~~~~~~~~~~~~v~~~~F~~~~~l~~li~~ve~ly~~ 131 (235)
.||+|||+|.--...-.++-..+.+-+......+--+++.+.++.|..
T Consensus 2 ~~Ivkk~n~t~v~~hl~~r~~~Ygd~s~~~DyqeAln~V~e~~eaFd~ 49 (114)
T PF09675_consen 2 NKIVKKFNKTGVIAHLEQRQPEYGDCSSPFDYQEALNMVAEANEAFDE 49 (114)
T ss_pred hHHHHHHccchHHHHHHhcCCcccccCCHHhHHHHHHHHHHHHHHHHH
Confidence 589999998731111111222223333122222344455666666654
No 70
>TIGR00802 nico high-affinity nickel-transporter, HoxN/HupN/NixA family. This family is found in both Gram-negative and Gram-positive bacteria. The functionally characterized members of the family catalyze uptake of either Ni2+ or Co2+ in a proton motive force-dependent process. Topological analyses with the HoxN Ni2+ transporter of Ralstonia eutropha (Alcaligenes eutrophus) suggest that it possesses 8 TMSs with its N- and C-termini in the cytoplasm.
Probab=20.57 E-value=5.4e+02 Score=23.51 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=16.7
Q ss_pred HHhHHHHHHHHHHHHHHhhhhc
Q psy7169 72 LQNYQNLNFTGFRKILKKHDKL 93 (235)
Q Consensus 72 Lk~Y~~LN~tgF~KIlKK~DK~ 93 (235)
|--..-+|.--++++.+.|.+.
T Consensus 87 L~~ig~~Nl~iL~~~~~~~r~~ 108 (280)
T TIGR00802 87 LLIIALLNLVILRNLLRLFRKV 108 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3345678888999999988765
No 71
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=20.44 E-value=1.9e+02 Score=26.41 Aligned_cols=63 Identities=16% Similarity=0.176 Sum_probs=39.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhcCCCCcchhHHHh------------hhhcCCCCChhhHHHHHHHHHHHHHHH
Q psy7169 68 SLILLQNYQNLNFTGFRKILKKHDKLLNVDVGAKWRAE------------HVDISHFYVNKDINHLISETEATVTSE 132 (235)
Q Consensus 68 ~L~lLk~Y~~LN~tgF~KIlKK~DK~~~~~~~~~~~~~------------~v~~~~F~~~~~l~~li~~ve~ly~~~ 132 (235)
.|.+|++|.++|-|=|-.|-+-|-++... .+.. +.+ .....-...+..+.+-++++|+.|...
T Consensus 197 ~L~ELESFKEinTtwfNgmksEWA~V~~A-wkne-LsEINSI~~gvEeLkKLAqEIss~Sn~lk~TIseLEKkFkId 271 (353)
T PF01540_consen 197 VLNELESFKEINTTWFNGMKSEWARVQEA-WKNE-LSEINSIIKGVEELKKLAQEISSHSNKLKATISELEKKFKID 271 (353)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 57789999999999999999999877532 0000 111 011112222456777778888777654
No 72
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=20.43 E-value=4e+02 Score=21.61 Aligned_cols=68 Identities=10% Similarity=0.084 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHhccCc--HHHHHhHcCCCCCCC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7169 116 KDINHLISETEATVTSELEEGD--RQKAMKRLRVPPLGE-QQSPWTTFKVGLFLGCFAILFAIILLRVWTE 183 (235)
Q Consensus 116 ~~l~~li~~ve~ly~~~f~~gd--rk~A~~~Lr~~~~~~-~~~~~~~F~~Gl~~G~~~~l~i~~~~~~~~~ 183 (235)
++......++++-+.+.-.+|| ..++.++.+..-.+. ..-...++...+.+++..+.+...+...+.+
T Consensus 43 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~mK~~~~~~v~~i~i~~wi~~~f~g 113 (168)
T PF01956_consen 43 DKYQKRMKEFQKRYRELRKNGDFKKPKKLEKRQMELMEKQQEMMMMMMKPMFVTMVPQIPIFYWINYFFSG 113 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Confidence 3444455555555555555555 222233222110011 1113566667777766655555545445554
No 73
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=20.28 E-value=1.8e+02 Score=16.50 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7169 8 LAEATRKFSNLRNELKRSQ 26 (235)
Q Consensus 8 ~aE~~rr~~~L~~ql~~~~ 26 (235)
+...+.|+..|+.||.+..
T Consensus 3 ~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4567888888888887753
No 74
>PRK14154 heat shock protein GrpE; Provisional
Probab=20.15 E-value=5.8e+02 Score=22.15 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy7169 6 EKLAEATRKFSNLRNELKRSQEET 29 (235)
Q Consensus 6 eK~aE~~rr~~~L~~ql~~~~~~~ 29 (235)
++++++..++++|++++..+.+..
T Consensus 59 ~el~~le~e~~elkd~~lRl~ADf 82 (208)
T PRK14154 59 GQLTRMERKVDEYKTQYLRAQAEM 82 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777665543
Done!