Query psy7169
Match_columns 235
No_of_seqs 224 out of 735
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 19:59:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7169.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7169hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t98_B Nucleoporin NUP58/NUP45 42.2 79 0.0027 22.8 6.4 26 2-27 8-33 (93)
2 3arc_L Photosystem II reaction 29.6 71 0.0024 19.2 3.5 19 161-179 14-32 (37)
3 2jwa_A Receptor tyrosine-prote 29.0 1.1E+02 0.0036 19.2 4.5 27 155-181 8-34 (44)
4 2l2t_A Receptor tyrosine-prote 27.9 1.1E+02 0.0037 19.1 4.4 28 155-182 7-34 (44)
5 2qts_A Acid-sensing ION channe 25.2 49 0.0017 29.6 3.5 21 161-181 412-432 (438)
6 2dt7_A Splicing factor 3A subu 21.6 66 0.0023 19.4 2.4 16 61-76 11-26 (38)
7 3sjb_C Golgi to ER traffic pro 21.5 2.4E+02 0.0081 20.4 8.3 69 10-92 20-88 (93)
8 3arc_X Photosystem II PSBX pro 21.3 1E+02 0.0035 18.8 3.2 25 156-180 5-29 (39)
9 2pnv_A Small conductance calci 19.4 1.7E+02 0.0058 18.1 4.1 22 6-27 16-37 (43)
10 2ks1_B Epidermal growth factor 18.6 1.3E+02 0.0044 18.8 3.4 25 157-181 10-34 (44)
No 1
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=42.18 E-value=79 Score=22.84 Aligned_cols=26 Identities=4% Similarity=0.155 Sum_probs=22.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH
Q psy7169 2 TFSMEKLAEATRKFSNLRNELKRSQE 27 (235)
Q Consensus 2 ~Fy~eK~aE~~rr~~~L~~ql~~~~~ 27 (235)
.||.++..++..++..++.+++.+=.
T Consensus 8 ~yF~~lv~~fe~rL~~Yr~~IeelE~ 33 (93)
T 3t98_B 8 DYFRVLVQQFEVQLQQYRQQIEELEN 33 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999998888743
No 2
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=29.59 E-value=71 Score=19.20 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7169 161 KVGLFLGCFAILFAIILLR 179 (235)
Q Consensus 161 ~~Gl~~G~~~~l~i~~~~~ 179 (235)
+++++.|.-+++..+++++
T Consensus 14 RTSLy~GLLlifvlavlFs 32 (37)
T 3arc_L 14 RTSLYLGLLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhh
Confidence 5677788777777777766
No 3
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=28.96 E-value=1.1e+02 Score=19.22 Aligned_cols=27 Identities=7% Similarity=0.137 Sum_probs=15.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7169 155 SPWTTFKVGLFLGCFAILFAIILLRVW 181 (235)
Q Consensus 155 ~~~~~F~~Gl~~G~~~~l~i~~~~~~~ 181 (235)
++..+..+|-.+|+.+++++.+++.+|
T Consensus 8 ~~~~~~Ia~~vVGvll~vi~~l~~~~~ 34 (44)
T 2jwa_A 8 ASPLTSIISAVVGILLVVVLGVVFGIL 34 (44)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHhh
Confidence 345666777777755444444444443
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=27.89 E-value=1.1e+02 Score=19.13 Aligned_cols=28 Identities=14% Similarity=0.288 Sum_probs=18.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7169 155 SPWTTFKVGLFLGCFAILFAIILLRVWT 182 (235)
Q Consensus 155 ~~~~~F~~Gl~~G~~~~l~i~~~~~~~~ 182 (235)
++..+.-+|+.-|+.+++++.+++.+|.
T Consensus 7 s~~~aIA~gVVgGv~~v~ii~~~~~~~~ 34 (44)
T 2l2t_A 7 ARTPLIAAGVIGGLFILVIVGLTFAVYV 34 (44)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEEeehHHHHHHHHHHHHHHHHh
Confidence 3355667777777887777766655443
No 5
>2qts_A Acid-sensing ION channel; trimer, membrane protein; HET: MAL NAG; 1.90A {Gallus gallus} PDB: 3hgc_A 3ij4_A
Probab=25.16 E-value=49 Score=29.59 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy7169 161 KVGLFLGCFAILFAIILLRVW 181 (235)
Q Consensus 161 ~~Gl~~G~~~~l~i~~~~~~~ 181 (235)
..|||+|+|++-++-+++.+.
T Consensus 412 ~~GLflG~S~ls~~Ei~~~~~ 432 (438)
T 2qts_A 412 QMGLFIGASILTVLELFDYAY 432 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHH
Confidence 359999999999988887643
No 6
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.57 E-value=66 Score=19.39 Aligned_cols=16 Identities=25% Similarity=0.692 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhHH
Q psy7169 61 AFSEYYLSLILLQNYQ 76 (235)
Q Consensus 61 al~E~y~~L~lLk~Y~ 76 (235)
.+.+||..|..++.|-
T Consensus 11 ~f~~FY~rlk~Ike~H 26 (38)
T 2dt7_A 11 EFAEFYNRLKQIKEFH 26 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5899999999998874
No 7
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=21.53 E-value=2.4e+02 Score=20.45 Aligned_cols=69 Identities=14% Similarity=0.068 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q psy7169 10 EATRKFSNLRNELKRSQEETMKSAKAKRKSALLLSRHKTDVPARKLQELKLAFSEYYLSLILLQNYQNLNFTGFRKILKK 89 (235)
Q Consensus 10 E~~rr~~~L~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~al~E~y~~L~lLk~Y~~LN~tgF~KIlKK 89 (235)
...++...|..++.++....+.. | ....+-...+|.+.+-.+-.+|+.++.=..-..++|.+.++|
T Consensus 20 ~~a~~~~~lk~E~~~lk~E~~st-----------S---aQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~~~~~~ 85 (93)
T 3sjb_C 20 ELSKKYLAKVKERHELKEFNNSI-----------S---AQDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHLHK 85 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTS-----------C---TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HhHHHHHHHHHHHHHHHHHHhcc-----------c---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777765543210 1 112355567899999999999999999999999999999998
Q ss_pred hhh
Q psy7169 90 HDK 92 (235)
Q Consensus 90 ~DK 92 (235)
.+-
T Consensus 86 ~~~ 88 (93)
T 3sjb_C 86 LEH 88 (93)
T ss_dssp ---
T ss_pred Hhh
Confidence 653
No 8
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=21.33 E-value=1e+02 Score=18.83 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=17.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q psy7169 156 PWTTFKVGLFLGCFAILFAIILLRV 180 (235)
Q Consensus 156 ~~~~F~~Gl~~G~~~~l~i~~~~~~ 180 (235)
+...|...++.|..++.++.+.+..
T Consensus 5 SL~nFl~Sl~aG~vvvv~i~~ali~ 29 (39)
T 3arc_X 5 SLKGFFIGLLSGAVVLGLTFAVLIA 29 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhee
Confidence 4577888999988876665555443
No 9
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=19.42 E-value=1.7e+02 Score=18.12 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7169 6 EKLAEATRKFSNLRNELKRSQE 27 (235)
Q Consensus 6 eK~aE~~rr~~~L~~ql~~~~~ 27 (235)
+.-.++..|+..|+.+++.+.+
T Consensus 16 ~r~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 16 ERSEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666655543
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=18.60 E-value=1.3e+02 Score=18.75 Aligned_cols=25 Identities=8% Similarity=0.230 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7169 157 WTTFKVGLFLGCFAILFAIILLRVW 181 (235)
Q Consensus 157 ~~~F~~Gl~~G~~~~l~i~~~~~~~ 181 (235)
....-+|+..|+.+++++.+++.+|
T Consensus 10 ~~~IA~gVVgGv~~~~ii~~~~~~~ 34 (44)
T 2ks1_B 10 IPSIATGMVGALLLLLVVALGIGLF 34 (44)
T ss_dssp SSSSTHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEeehhHHHHHHHHHHHHHHHH
Confidence 3445567777777766666555543
Done!