Query psy7169
Match_columns 235
No_of_seqs 224 out of 735
Neff 6.4
Searched_HMMs 13730
Date Fri Aug 16 19:59:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7169.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7169hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 27.5 38 0.0028 18.8 3.5 19 161-179 14-32 (37)
2 d2nsza1 a.118.1.14 (A:322-450) 19.5 18 0.0013 25.7 1.2 29 119-147 4-32 (129)
3 d1v54d_ f.23.1.1 (D:) Mitochon 13.8 1.1E+02 0.0083 22.0 4.7 27 156-182 74-100 (144)
4 d1nu9c2 a.8.6.1 (C:146-281) St 10.8 98 0.0071 22.1 3.3 32 116-147 14-45 (136)
5 d2q66a1 a.160.1.1 (A:202-351) 9.6 46 0.0034 24.3 1.1 23 161-183 26-48 (150)
6 d2d8da1 a.130.1.1 (A:3-82) Cho 9.0 1.5E+02 0.011 18.3 3.6 24 6-29 1-24 (80)
7 d1sfka_ a.190.1.1 (A:) Flavivi 8.9 30 0.0022 22.4 -0.2 40 57-96 21-66 (73)
8 d2axtz1 f.17.5.1 (Z:1-62) Phot 8.6 2.3E+02 0.016 17.4 5.3 18 196-213 39-56 (62)
9 d1tuba2 d.79.2.1 (A:246-440) T 8.6 1.5E+02 0.011 21.6 3.9 16 82-97 142-157 (195)
10 d2liga_ a.24.2.1 (A:) Aspartat 8.3 3.4E+02 0.025 19.2 7.3 22 55-76 96-117 (157)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=27.45 E-value=38 Score=18.80 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7169 161 KVGLFLGCFAILFAIILLR 179 (235)
Q Consensus 161 ~~Gl~~G~~~~l~i~~~~~ 179 (235)
+..++.|.-+++...++++
T Consensus 14 rtsLy~GlLlifvl~vLFs 32 (37)
T d2axtl1 14 RTSLYLGLLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 5667777777777766666
No 2
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.53 E-value=18 Score=25.67 Aligned_cols=29 Identities=31% Similarity=0.408 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhccCcHHHHHhHcCC
Q psy7169 119 NHLISETEATVTSELEEGDRQKAMKRLRV 147 (235)
Q Consensus 119 ~~li~~ve~ly~~~f~~gdrk~A~~~Lr~ 147 (235)
+.|..+++.+...||.+||.+.|..-++-
T Consensus 4 ~~l~kk~~~ll~EY~~~~D~~Ea~~~l~e 32 (129)
T d2nsza1 4 NHLVKEIDMLLKEYLLSGDISEAEHCLKE 32 (129)
T ss_dssp CHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 46788899999999999999999887763
No 3
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.84 E-value=1.1e+02 Score=21.96 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=21.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7169 156 PWTTFKVGLFLGCFAILFAIILLRVWT 182 (235)
Q Consensus 156 ~~~~F~~Gl~~G~~~~l~i~~~~~~~~ 182 (235)
.|-+.+.|.++|+++.+++.++...+.
T Consensus 74 ewK~v~g~~~~~i~~s~~i~~~~r~~v 100 (144)
T d1v54d_ 74 EWKTVVGAAMFFIGFTALLLIWEKHYV 100 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 378888889998888888877776544
No 4
>d1nu9c2 a.8.6.1 (C:146-281) Staphylocoagulase {Staphylococcus aureus [TaxId: 1280]}
Probab=10.83 E-value=98 Score=22.10 Aligned_cols=32 Identities=6% Similarity=0.153 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHhccCcHHHHHhHcCC
Q psy7169 116 KDINHLISETEATVTSELEEGDRQKAMKRLRV 147 (235)
Q Consensus 116 ~~l~~li~~ve~ly~~~f~~gdrk~A~~~Lr~ 147 (235)
.+|..|..+|-.+|..++.+.+.+...+.||.
T Consensus 14 ~~i~~lv~ei~tl~~tyy~~~~~~~~a~eLra 45 (136)
T d1nu9c2 14 ARVDDLANKAYSVYFAFVRDTQHKTEALELKA 45 (136)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhheeccchhhHHHHHHHH
Confidence 47889999999999999998888888888884
No 5
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.60 E-value=46 Score=24.33 Aligned_cols=23 Identities=9% Similarity=0.142 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q psy7169 161 KVGLFLGCFAILFAIILLRVWTE 183 (235)
Q Consensus 161 ~~Gl~~G~~~~l~i~~~~~~~~~ 183 (235)
..|++-|++++++++-+-..+..
T Consensus 26 ~~GylGGI~waILvArvCql~p~ 48 (150)
T d2q66a1 26 IFGFPGGVAWAMLVARICQLYPN 48 (150)
T ss_dssp GGTSCCHHHHHHHHHHHHHHSTT
T ss_pred cccccHHHHHHHHHHHHHHhCCC
Confidence 46899999999988876655533
No 6
>d2d8da1 a.130.1.1 (A:3-82) Chorismate mutase domain of P-protein {Thermus thermophilus [TaxId: 274]}
Probab=8.98 E-value=1.5e+02 Score=18.25 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy7169 6 EKLAEATRKFSNLRNELKRSQEET 29 (235)
Q Consensus 6 eK~aE~~rr~~~L~~ql~~~~~~~ 29 (235)
+++++++.+++.+..++-.++...
T Consensus 1 e~L~~lR~~ID~iD~~i~~Ll~~R 24 (80)
T d2d8da1 1 ERIQALRKEVDRVNREILRLLSER 24 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999887654
No 7
>d1sfka_ a.190.1.1 (A:) Flavivirus capsid protein C {Kunjin virus [TaxId: 11077]}
Probab=8.91 E-value=30 Score=22.43 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHHHhhhhcCCC
Q psy7169 57 ELKLAFSEYYLSL------ILLQNYQNLNFTGFRKILKKHDKLLNV 96 (235)
Q Consensus 57 ~Lk~al~E~y~~L------~lLk~Y~~LN~tgF~KIlKK~DK~~~~ 96 (235)
.+--|+..|++.+ .+|+.+..+|...=.|+||.|.|-.|+
T Consensus 21 R~vLA~laFfRFtAi~Pt~~ll~RW~~v~K~~A~k~L~~FKKeig~ 66 (73)
T d1sfka_ 21 RFVLALLAFFRFTAIAPTRAVLDRWRSVNKQTAMKHLLSFKKELGT 66 (73)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 3456788888875 469999999999999999999987654
No 8
>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z, PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.64 E-value=2.3e+02 Score=17.39 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=13.4
Q ss_pred hhhhHHHHHHHHHHHHHh
Q psy7169 196 GLFLGCFAILFAIILLRD 213 (235)
Q Consensus 196 ~iyrg~fl~il~~~~~~~ 213 (235)
-+|.|..+++...++.|+
T Consensus 39 lvfsG~~~W~~LV~lvgi 56 (62)
T d2axtz1 39 LIFLGSGLWIALVLVVGV 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eEEEchhHHHHHHHHHHh
Confidence 378888888877777664
No 9
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=8.60 E-value=1.5e+02 Score=21.59 Aligned_cols=16 Identities=13% Similarity=0.247 Sum_probs=13.2
Q ss_pred HHHHHHHhhhhcCCCC
Q psy7169 82 GFRKILKKHDKLLNVD 97 (235)
Q Consensus 82 gF~KIlKK~DK~~~~~ 97 (235)
-|.+|++||||.....
T Consensus 142 ~f~~i~~~Fdkl~~rk 157 (195)
T d1tuba2 142 AWARLDHKFDLMYAKR 157 (195)
T ss_dssp HHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3889999999998654
No 10
>d2liga_ a.24.2.1 (A:) Aspartate receptor, ligand-binding domain {Salmonella typhimurium [TaxId: 90371]}
Probab=8.35 E-value=3.4e+02 Score=19.19 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q psy7169 55 LQELKLAFSEYYLSLILLQNYQ 76 (235)
Q Consensus 55 ~~~Lk~al~E~y~~L~lLk~Y~ 76 (235)
...|++.+..+|..|..|-.|-
T Consensus 96 ~~~l~~sY~~~~~aL~el~~~L 117 (157)
T d2liga_ 96 SANVDEKYQRYQAALAELIQFL 117 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3568888888888888776654
Done!