RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7169
(235 letters)
>gnl|CDD|217372 pfam03105, SPX, SPX domain. We have named this region the SPX
domain after (SYG1, Pho81 and XPR1). This 180 residue
length domain is found at the amino terminus of a
variety of proteins. In the yeast protein SYG1, the
N-terminus directly binds to the G- protein beta subunit
and inhibits transduction of the mating pheromone
signal. This finding suggests that all the members of
this family are involved in G-protein associated signal
transduction. The N-termini of several proteins involved
in the regulation of phosphate transport, including the
putative phosphate level sensors PHO81 from
Saccharomyces cerevisiae and NUC-2 from Neurospora
crassa, are also members of this family. The SPX domain
of S. cerevisiae low-affinity phosphate transporters
Pho87 and Pho90 auto-regulates uptake and prevents
efflux. This SPX dependent inhibition is mediated by the
physical interaction with Spl2 NUC-2 contains several
ankyrin repeats pfam00023. Several members of this
family are annotated as XPR1 proteins: the xenotropic
and polytropic retrovirus receptor confers
susceptibility to infection with murine leukaemia
viruses (MLV). The similarity between SYG1, phosphate
regulators and XPR1 sequences has been previously noted,
as has the additional similarity to several predicted
proteins, of unknown function, from Drosophila
melanogaster, Arabidopsis thaliana, Caenorhabditis
elegans, Schizosaccharomyces pombe, and Saccharomyces
cerevisiae. In addition, given the similarities between
XPR1 and SYG1 and phosphate regulatory proteins, it has
been proposed that XPR1 might be involved in G-protein
associated signal transduction and may itself function
as a phosphate sensor.
Length = 176
Score = 80.9 bits (200), Expect = 5e-19
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 2 TFSMEKLAEATRKFSNLRNELKRSQEETMKSAKAKRKSALLLSRHKTDVPARKLQELKLA 61
+F EK AE + L +L E ++ + + SA S + +ELK A
Sbjct: 78 SFYKEKEAELLERLEELEKQL-----EELEERRDETSSAK--SSPSDKNLLKAFEELKKA 130
Query: 62 FSEYYLSLILLQNYQNLNFTGFRKILKKHDKLLNVDVGAKWRAEHV 107
E Y L LL++Y LN TGFRKILKK+DK+ + K+ + V
Sbjct: 131 LLELYRELQLLKSYIELNRTGFRKILKKYDKITGSSLSKKYLEKVV 176
>gnl|CDD|227695 COG5408, COG5408, SPX domain-containing protein [Signal
transduction mechanisms].
Length = 296
Score = 41.4 bits (97), Expect = 2e-04
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 58 LKLAFSEYYLSLILLQNYQNLNFTGFRKILKKHDKLLN 95
LK E Y+ L L+++ LN+TGF KI KK+DK L+
Sbjct: 243 LKKRIIELYIQLHQLKSFIELNYTGFSKITKKYDKTLH 280
>gnl|CDD|227369 COG5036, COG5036, SPX domain-containing protein involved in
vacuolar polyphosphate accumulation [Inorganic ion
transport and metabolism].
Length = 509
Score = 39.4 bits (92), Expect = 0.001
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 72 LQNYQNLNFTGFRKILKKHDK 92
L + LNFTGF+KI+KKHDK
Sbjct: 105 LAKFSRLNFTGFKKIVKKHDK 125
>gnl|CDD|149223 pfam08019, DUF1705, Domain of unknown function (DUF1705). Some
members of this family are putative bacterial membrane
proteins. This domain is found immediately N terminal to
the sulfatase domain in many sulfatases.
Length = 156
Score = 34.8 bits (81), Expect = 0.015
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 159 TFKVGLFLGCFAILFAIILLRVWTERIVALSQILFKVGLFLGCFAILFAIILL 211
+ K+ L+L +L A++LLRV L ++L ++ L ++ I L
Sbjct: 65 SPKLILYLLLLGVLPALLLLRVKIRYRPWLRELLQRLLSILASLLVILLIAFL 117
>gnl|CDD|225122 COG2212, MnhF, Multisubunit Na+/H+ antiporter, MnhF subunit
[Inorganic ion transport and metabolism].
Length = 89
Score = 31.0 bits (71), Expect = 0.12
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 164 LFLGCFAILFAIILLRV-----WTERIVALSQILFKVGLFLGCFAILFAIILLRD 213
+ L + + L RV +R+VAL + + L IL + D
Sbjct: 9 IALIILGLALLLALYRVIRGPTLPDRVVALDTLGTNLVGILALLGILTGNTIYLD 63
>gnl|CDD|217678 pfam03699, UPF0182, Uncharacterized protein family (UPF0182). This
family contains uncharacterized integral membrane
proteins.
Length = 771
Score = 32.9 bits (76), Expect = 0.13
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 161 KVGLFLGCFAILFAIILLRV--WTERI---------VALSQILFKVGLFLGCFAILFAII 209
KV + L +L +I L +T+ + V +++L ++GLFL F I F +
Sbjct: 4 KVLIILAIVVLLLLLISLLADLYTDWLWFKELGYLSVFWTRLLTRIGLFLLVFLIFFLFL 63
Query: 210 LL 211
L
Sbjct: 64 FL 65
>gnl|CDD|225239 COG2364, COG2364, Predicted membrane protein [Function unknown].
Length = 210
Score = 31.5 bits (72), Expect = 0.22
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 157 WTTFKVGLFLGCFAILFAIILLRVWTERIVALSQILF-KVGLFLGCFAILFAIILL 211
W F +GL + F I IL + T L L + GL +G ++I+ L+
Sbjct: 10 WIFFLIGLLILSFGISL-TILAGLGTSPWDVLHVGLSMQFGLTVGSWSIILGSCLI 64
Score = 29.6 bits (67), Expect = 1.2
Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 19/66 (28%)
Query: 155 SPWTTFKVGL-------------FLGCFAILFAIILLRVWTERIVALSQIL--FKVGLFL 199
SPW VGL LG I ILLR L +L +G+F+
Sbjct: 35 SPWDVLHVGLSMQFGLTVGSWSIILGSCLIGCTWILLRKK----PGLGTLLNALLIGVFI 90
Query: 200 GCFAIL 205
F L
Sbjct: 91 DLFLFL 96
>gnl|CDD|212064 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin,
pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 477
Score = 31.0 bits (71), Expect = 0.49
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 162 VGLFLGCFAILFAIILLRVWTERIVALSQILFKVGLFLGCFAILFA 207
+ L +G A++L + ++ L L GLF G A LF
Sbjct: 373 ITLLVGILGTGGALLLAHSNVKSLLDLFLKL--TGLFGGGLAGLFL 416
>gnl|CDD|206279 pfam14110, DUF4282, Domain of unknown function (DUF4282). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 93 and 155
amino acids in length. There is a single completely
conserved residue E that may be functionally important.
Length = 89
Score = 28.3 bits (64), Expect = 1.2
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 151 GEQQSPWTTFKVGLFLGCFAILFAIILLRVWTERIVALSQI 191
SP + L LG L ++L+RV E +VAL +I
Sbjct: 39 TMAYSPGGGL-LALLLGPLGFLLGLLLVRVVLELLVALFRI 78
>gnl|CDD|217699 pfam03729, DUF308, Short repeat of unknown function (DUF308).
Family of short repeats that occurs in a limited number
of membrane proteins. It may divide further in short
repeats of around 7-10 residues of the pattern
G-#-X(2)-#(2)-X (#=hydrophobic).
Length = 72
Score = 27.0 bits (61), Expect = 1.9
Identities = 7/56 (12%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 158 TTFKVGLFLGCFAILFAII-LLRVWTERIVALSQILFKVGLFLGCFAILFAIILLR 212
+ + +G ++ I+ ++ + R + L G +++ ++LL
Sbjct: 20 ALLALVILIGILLLVSGILQIIAAFQRRKGGGGRWWL---LLSGILSLIAGLLLLF 72
>gnl|CDD|233185 TIGR00918, 2A060602, The Eukaryotic (Putative) Sterol Transporter
(EST) Family.
Length = 1145
Score = 29.5 bits (66), Expect = 2.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 157 WTTFKVGLFLGCFAILFAIILLRVWTERIVALSQILFKVGLF 198
W + + L C ++ A++LL WT ++ L L V LF
Sbjct: 966 WLLLSISVVLACTFLVCALLLLNPWTAGLIVLVLALMTVELF 1007
>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed.
Length = 277
Score = 28.9 bits (65), Expect = 2.2
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 161 KVGLFLGCFAILF--------AIILLRVWTERIVALSQILFKVGLFLGCFAILFAII 209
K G+ LG I+ A ++LR Q L K+ +FL + L +
Sbjct: 219 KAGIGLGYLPIIIVDAIILYAAYLVLRNPDRETAHKGQKLLKIAIFLAVISFLLGAL 275
>gnl|CDD|237639 PRK14203, PRK14203, camphor resistance protein CrcB; Provisional.
Length = 132
Score = 27.9 bits (62), Expect = 2.5
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 153 QQSPWTTFKVGLFLGCFAIL--FAI--ILLRVWTERIVALSQILFKVGLFLGCFAILFA 207
+PW F V FLGC+ + F++ + L E + AL + F + L L AI FA
Sbjct: 68 LPAPWL-FAVTGFLGCYTTVSSFSLQTLTLARDGEFLRALGNVAFSLILCLIAVAIGFA 125
>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of
the band 7 domain of flotillin (reggie) like proteins
similar to stomatin and podicin (two lipid
raft-associated integral membrane proteins). Individual
proteins of this band 7 domain family may cluster to
form membrane microdomains which may in turn recruit
multiprotein complexes. Stomatin is widely expressed
and, highly expressed in red blood cells. It localizes
predominantly to the plasma membrane and to
intracellular vesicles of the endocytic pathway, where
it is present in higher order homo-oligomeric complexes
(of between 9 and 12 monomers). Stomatin interacts with
and regulates members of the degenerin/epithelia Na+
channel family in mechanosensory cells of Caenorhabditis
elegans and vertebrate neurons and, is implicated in
trafficking of Glut1 glucose transporters. Prohibitin is
a mitochondrial inner-membrane protein hypothesized to
act as a chaperone for the stabilization of
mitochondrial proteins. Podicin localizes to the plasma
membrane of podocyte foot processes and, is found in
higher order oligomers. Podocin plays a role in
regulating glomerular permeability. Mutations in the
podicin gene give rise to autosomal recessive steroid
resistant nephritic syndrome. This group also contains
proteins similar to three Caenorhabditis elegans
proteins: UNC-1, UNC-24 and, MEC-2. Mutations in the
unc-1 and unc-24 genes result in abnormal motion and
altered patterns of sensitivity to volatile anesthetics.
MEC-2 and UNC-24 proteins interact with MEC-4 which is
part of the degenerin channel complex required for
response to gentle body touch.
Length = 215
Score = 28.3 bits (64), Expect = 2.7
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 12/60 (20%)
Query: 4 SMEKLAEATRKFSNLRNELKRSQ----EETMKSAKAKRKSALLLSRHKTDVPARKLQELK 59
+M K AEA R+ KR++ E ++A ++A + + + R+L+ L+
Sbjct: 149 AMAKQAEAERE--------KRAKIIEAEGERQAAILLAEAAKQAAINPAALQLRELETLE 200
>gnl|CDD|223425 COG0348, NapH, Polyferredoxin [Energy production and conversion].
Length = 386
Score = 28.6 bits (64), Expect = 2.7
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 128 TVTSELEEGDRQKAMKRLRVPPLGEQQSPWTTFKVGLFLGCFAILFAIILLRVWTERIVA 187
V +EL EG R K K Q++PW K+ L L + + I+LL +++
Sbjct: 91 GVLTELAEGLRNKLFKL--------QKAPWPLRKLRLKLLKYLLFLLILLLLLYSWIGAY 142
Query: 188 LSQIL-----FKVGLFLGCFAILFAIILL 211
+ + G F LFA+
Sbjct: 143 FAPVEPLLGRLLTGGFGRLAIGLFAVFAF 171
>gnl|CDD|219137 pfam06687, SUR7, SUR7/PalI family. This family consists of several
fungal-specific SUR7 proteins. Its activity regulates
expression of RVS161, a homologue of human endophilin,
suggesting a function for both in endocytosis. The
protein carries four transmembrane domains and is thus
likely to act as an anchoring protein for the eisosome
to the plasma membrane. Eisosomes are the immobile
protein complexes, that include the proteins Pil1 and
Lsp1, which co-localise with sites of protein and lipid
endocytosis at the plasma membrane. SUR7 protein may
play a role in sporulation. This family also includes
PalI which is part of a pH signal transduction cascade.
Based on the similarity of PalI to the yeast Rim9
meiotic signal transduction component it has been
suggested that PalI might be a membrane sensor for
ambient pH.
Length = 205
Score = 28.1 bits (63), Expect = 3.1
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Query: 157 WTTFKVGLFLGCFAILFAIILLRVWTERIVALSQILFKVGLFLGCFAILFAII 209
+ + LF A++ A IL + + V L A LF ++
Sbjct: 113 FIVHPIALFFTVIALILAGILA------HFSSPRRGSLVNFLLSLLAFLFTLL 159
>gnl|CDD|226644 COG4176, ProW, ABC-type proline/glycine betaine transport system,
permease component [Amino acid transport and
metabolism].
Length = 290
Score = 28.4 bits (64), Expect = 3.3
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 157 WTTFKVGLFLGCFAILFAIILLRVWTERIVALSQILFK------VGLFLG 200
W +GL + L I L +W + + L+ +L +G+ LG
Sbjct: 67 WFASGLGLAIFTLLGLLLIGNLGLWDQTMQTLALVLTATLISIVIGIPLG 116
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 27.7 bits (62), Expect = 4.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 6 EKLAEATRKFSNLRNELKRSQEETMKSAKAKRKSALL 42
+K A +F NLR +R +EE K A K LL
Sbjct: 57 DKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLL 93
>gnl|CDD|181537 PRK08676, PRK08676, hydrogenase membrane subunit; Validated.
Length = 485
Score = 28.2 bits (63), Expect = 4.4
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 155 SPWTTFKVGLFLGCFAILFAIILLRVWTER 184
S W V L L A FAI LL+ +T
Sbjct: 404 SVWLVLAVLLLLLLAASSFAIFLLKAFTRV 433
>gnl|CDD|221947 pfam13160, DUF3995, Protein of unknown function (DUF3995). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 138 and
149 amino acids in length. There are two completely
conserved residues (W and P) that may be functionally
important.
Length = 125
Score = 27.3 bits (61), Expect = 4.5
Identities = 8/56 (14%), Positives = 15/56 (26%), Gaps = 5/56 (8%)
Query: 152 EQQSPWTTFKVGLFLGCFAILFAIILLRVWTERIVALSQILFKVGLFLGCFAILFA 207
+ + T V L A L ++ L + G + A+
Sbjct: 34 FRPGAFATLLVAALLLLAAAL--VLAQAGGVGPFP--PPGLVRAGSW-VLAAVFLL 84
>gnl|CDD|216831 pfam01988, VIT1, VIT family. This family includes the vacuolar
Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar iron
transporter VIT1.
Length = 209
Score = 27.6 bits (62), Expect = 4.5
Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 14/108 (12%)
Query: 104 AEHVDISHFYVNKDINHLISETEATVTSELEEGDRQKAMKRLRVPPLGEQQSPWTTFKVG 163
E +++ Y + ++ E V EL + D AM R LG + + K
Sbjct: 80 GEREELAEIYRARGLSE---ELARQVARELMKKDALDAMMREE---LGLEPETASPLKAA 133
Query: 164 LFLGCFAILFAIILLRVWTERIVALSQILFKVGLFLGCFAILFAIILL 211
L G IL +I L + L + L + L A+ LL
Sbjct: 134 LASGLSFILGGLIPL------LPYL--LAPPSALIVSIAVTLLALFLL 173
>gnl|CDD|119297 pfam10777, YlaC, sigma70 family sigma factor YlaC. Members of the
sigma70 family of sigma factors are components of the
RNA polymerase holoenzyme that direct bacterial or
plastid core RNA polymerase to specific promoter
elements. This domain is an inner membrane protein of
unknown function.
Length = 156
Score = 27.4 bits (61), Expect = 4.5
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 163 GLFLGCFAILFAIILLRVWTERIVALSQILFKVGLFLGCFAILF 206
LFL A A++ + + + S F V LF+ A LF
Sbjct: 37 YLFLAMLASYLAVLAVMLQSPYFGLGSVWAFTV-LFIVMNAFLF 79
>gnl|CDD|133462 cd06852, GT_MraY, Phospho-N-acetylmuramoyl-pentapeptide-transferase
(mraY) is an enzyme responsible for the formation of the
first lipid intermediate in the synthesis of bacterial
cell wall peptidoglycan. It catalyzes the formation of
undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-
pentapeptide from UDP-MurNAc-pentapeptide and
undecaprenyl-phosphate. It is an integral membrane
protein with possibly ten transmembrane domains.
Length = 280
Score = 27.8 bits (63), Expect = 4.6
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 169 FAILFAIILLRVWTERIVALSQILFKVGLFLGCFAILFAIILL 211
AI+FA++L + + LG I FAI ++
Sbjct: 80 IAIVFALLLYYFNGSGTLITLPFFKNGLIDLGILYIPFAIFVI 122
>gnl|CDD|225786 COG3247, HdeD, Uncharacterized conserved protein [Function
unknown].
Length = 185
Score = 27.6 bits (62), Expect = 4.6
Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 7/53 (13%)
Query: 164 LFLGCFAILFAIILLRVWTERIVALSQILFKVGLFLGCFAILFAIILLRDGVR 216
+ G I+ +ILL L GL LG I I L+ +
Sbjct: 135 IISGVLGIIAGLILLFNPVASAWIL-------GLLLGIELIFQGIALIAFALL 180
>gnl|CDD|149126 pfam07884, VKOR, Vitamin K epoxide reductase family. Vitamin K
epoxide reductase (VKOR) recycles reduced vitamin K,
which is used subsequently as a co-factor in the
gamma-carboxylation of glutamic acid residues in blood
coagulation enzymes. VKORC1 is a member of a large
family of predicted enzymes that are present in
vertebrates, Drosophila, plants, bacteria and archaea.
Four cysteine residues and one residue, which is either
serine or threonine, are identified as likely
active-site residues. In some plant and bacterial
homologues the VKORC1 homologous domain is fused with
domains of the thioredoxin family of oxidoreductases.
Length = 138
Score = 27.3 bits (61), Expect = 4.7
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 154 QSPWTTFKVGLFLGCFAILF--AIILLRVWTERIVALSQILFKVGLFLGCFAILFAIILL 211
SPW T G+ IL ++LL V V LS+ + ++F++ L+
Sbjct: 48 NSPWATI-FGIPNSLLGILAYLVVLLLGVLGLAGVTLSRWTWLGLFLGSLVGVVFSVYLI 106
>gnl|CDD|226953 COG4587, COG4587, ABC-type uncharacterized transport system,
permease component [General function prediction only].
Length = 268
Score = 27.7 bits (62), Expect = 4.7
Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 155 SPWTTFKVGLFLGC-----FAILFAIILLRVWTERIVALSQILFK-VGLFLGCFAIL 205
SPWT + L L F I F L WTER +L + + G A L
Sbjct: 142 SPWTLYLFVLALALLFLLRFLIQFTFGLFAFWTERASSLGKFWWLLYAFLSGSLAPL 198
>gnl|CDD|132762 cd07348, NR_LBD_NGFI-B, The ligand binding domain of Nurr1, a
member of conserved family of nuclear receptors. The
ligand binding domain of Nerve growth factor-induced-B
(NGFI-B): NGFI-B is a member of the nuclear#steroid
receptor superfamily. NGFI-B is classified as an orphan
receptor because no ligand has yet been identified.
NGFI-B is an early immediate gene product of the embryo
development that is rapidly produced in response to a
variety of cellular signals including nerve growth
factor. It is involved in T-cell-mediated apoptosis, as
well as neuronal differentiation and function. NGFI-B
regulates transcription by binding to a specific DNA
target upstream of its target genes and regulating the
rate of transcriptional initiation. Like other members
of the nuclear receptor (NR) superfamily of
ligand-activated transcription factors, NGFI-B has a
central well conserved DNA binding domain (DBD), a
variable N-terminal domain, a flexible hinge and a
C-terminal ligand binding domain (LBD).
Length = 238
Score = 27.5 bits (61), Expect = 5.6
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 181 WTERIVALSQILFKVGLFLGCFAILFAIILLRDGVRRNELKE 222
W + I+ SQ L ++ L + F+ L A++++ D R+ LKE
Sbjct: 122 WIDSILEFSQSLHRMNLDVSAFSCLAALVIITD---RHGLKE 160
>gnl|CDD|216411 pfam01284, MARVEL, Membrane-associating domain. MARVEL
domain-containing proteins are often found in
lipid-associating proteins - such as Occludin and MAL
family proteins. It may be part of the machinery of
membrane apposition events, such as transport vesicle
biogenesis.
Length = 132
Score = 26.9 bits (60), Expect = 5.7
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 156 PWTTFKVGLFLGCFAILFAIILLRVWTERIVALSQILFKVGLFLGCFAILFAIILL 211
+ +F+ F+ L A+ L ++ I + L L A+ L
Sbjct: 32 NPSAVNFAVFVAVFSFLIALYFLLLYLFGYSYFPSIAW--PLVDLILDALAALFWL 85
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 26.8 bits (60), Expect = 5.8
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 148 PPLGEQQSPWTTFKVG-LFLGCFAILFAIILLRVWTE 183
PPLG + + ++ LFL A+ I+L + E
Sbjct: 104 PPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140
>gnl|CDD|149146 pfam07907, YibE_F, YibE/F-like protein. The sequences featured in
this family are similar to two proteins expressed by
Lactococcus lactis, YibE and YibF. Most of the members
of this family are annotated as being putative membrane
proteins, and in fact the sequences contain a high
proportion of hydrophobic residues.
Length = 244
Score = 27.4 bits (62), Expect = 5.9
Identities = 6/54 (11%), Positives = 17/54 (31%), Gaps = 8/54 (14%)
Query: 162 VGLFLGCFAILFAIILLRVWTERIVALSQILFKVGLFLGCFAILFAIILLRDGV 215
+ L L + +I + + + ++ + I + L +G
Sbjct: 27 LSLVLNFVLLFLVLIPIILAGFNPILVT--------IILAIIITAVTLFLVNGF 72
>gnl|CDD|219638 pfam07914, DUF1679, Protein of unknown function (DUF1679). The
region featured in this family is found in a number of
C. elegans proteins, in one case as a repeat. In many of
the family members, this region is associated with the
CHK region described by SMART as being found in ZnF_C4
and HLH domain-containing kinases. In fact, one member
of this family is annotated as being a member of the
nuclear hormone receptor family, and contains regions
typical of such proteins (Interpro:IPR000536,
Interpro:IPR008946, and Interpro:IPR001628).
Length = 413
Score = 27.6 bits (62), Expect = 6.1
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 6 EKLAEATRKFSNLRNELKRSQEETMKSAKAKRKSALLLSRHKTDVPARKLQELKLAFSEY 65
E L+E +K +N + L++ E M K L + + P K++EL F Y
Sbjct: 189 ESLSEEEKKSANGADFLEQMFETFMSEEGLKGIFDQLRNIFGAEYPE-KVEELVDIFEHY 247
Query: 66 YLSLILLQNYQNLN-FTGFRKIL 87
+++ + Y NL+ G + +L
Sbjct: 248 GPEILIFKKYTNLSKVLGIKPVL 270
>gnl|CDD|181853 PRK09433, thiP, thiamine transporter membrane protein; Reviewed.
Length = 525
Score = 27.5 bits (62), Expect = 6.2
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 28/84 (33%)
Query: 154 QSPWTTFKVGLFLGCFAILFAIILLRVWTER--------------------IVALSQILF 193
Q+ WT+ ++ L A++ ++LL W+ R I+A+ I+
Sbjct: 319 QALWTSLRIALAAALLAVVLTMMLL--WSSRELRLRQRKLAAQALELSGMLILAMPGIVL 376
Query: 194 KVGLFL------GCFAILFAIILL 211
GLFL A I++L
Sbjct: 377 ATGLFLLLRNTTDLPASALGIVIL 400
>gnl|CDD|226427 COG3913, SciT, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 227
Score = 27.3 bits (60), Expect = 6.2
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 126 EATVTSELEEGDRQKAMKRLRVPPLGEQQSPWTTF 160
+ G A +L VP Q+ +F
Sbjct: 121 LLARAGDATVGLFLAAEAQLPVPTGAGTQTYDASF 155
>gnl|CDD|222436 pfam13886, DUF4203, Domain of unknown function (DUF4203). This is
the N-terminal region of 7tm proteins. The function is
not known.
Length = 210
Score = 27.2 bits (61), Expect = 6.4
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 157 WTTF---KVGLFLGCFAI--LFAIILLRVWTERIVALSQILFKVGLFLGCFAILFAIILL 211
W F VGLF + L A LL + + + L C AILFA++ L
Sbjct: 72 WWVFLIVSVGLFCVGLLLGFLLASALLFLPLGNLYIYHSDWVLLVTLL-CGAILFALLTL 130
Query: 212 R 212
+
Sbjct: 131 K 131
>gnl|CDD|206528 pfam14360, PAP2_C, PAP2 superfamily C-terminal. This family is
closely related to the C-terminal a region of PAP2.
Length = 72
Score = 25.6 bits (57), Expect = 6.9
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 3/42 (7%)
Query: 171 ILFAIILLRVWTERIVALSQILFKVGLFLGCFAILFAIILLR 212
+F + E + KV +L F II R
Sbjct: 11 TVFTTLAFLFIWE---YSPRWFLKVIAWLLSLIGYFLIIASR 49
>gnl|CDD|182898 PRK11010, ampG, muropeptide transporter; Validated.
Length = 491
Score = 27.3 bits (61), Expect = 8.5
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 10/75 (13%)
Query: 156 PWTTFKVGLFLGCFAILFAIILLRVW----------TERIVALSQILFKVGLFLGCFAIL 205
P T + G +L + LL VW L L +VG+ + I+
Sbjct: 417 PRTEYPAGYRFALRLLLAGVSLLAVWLLLLTMNALDLTHFSFLPATLLEVGVLVALSGIV 476
Query: 206 FAIILLRDGVRRNEL 220
+L +R+ L
Sbjct: 477 LGGLLDYLALRKTHL 491
>gnl|CDD|172505 PRK14004, hisH, imidazole glycerol phosphate synthase subunit
HisH; Provisional.
Length = 210
Score = 26.8 bits (59), Expect = 8.5
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 76 QNLNFTGFRKILKKH 90
+NLN TG R + KH
Sbjct: 54 ENLNSTGLRSTIDKH 68
>gnl|CDD|222228 pfam13567, DUF4131, Domain of unknown function (DUF4131). This
domain is frequently found to the N-terminus of the
Competence domain, pfam03772.
Length = 173
Score = 26.6 bits (59), Expect = 8.8
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 162 VGLFLGCFAILFAIILLRVWTERIVALSQILFKVGLFLGCFAILFAIILL 211
+ L L L A++LL + R + +L + L LG +
Sbjct: 12 LPLPLWLLLALLALLLLLLLYRRKRRRTLLLLLLLLLLGGLGLGLRAYRR 61
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 27.4 bits (60), Expect = 8.9
Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 11/132 (8%)
Query: 21 ELKRSQEETMKSAKAKRKSALLLSRHKTDVPARKLQELKLAFSEYYLSLILLQNYQNLNF 80
E K+ EE K+ + ++K+A L + + A+K +ELK +E L+ + N
Sbjct: 1672 EDKKKAEEAKKAEEDEKKAAEALKKEAEE--AKKAEELKKKEAEEKKKAEELKKAEEENK 1729
Query: 81 TGFRKILKKHD------KLLNVDVGAKWRAEHVDISHFYVNKDINHLISETEATVTSELE 134
+ K+ + + D K + H+ K + E EA + EL+
Sbjct: 1730 IKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEE---EKKAEEIRKEKEAVIEEELD 1786
Query: 135 EGDRQKAMKRLR 146
E D ++ M+ +
Sbjct: 1787 EEDEKRRMEVDK 1798
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.136 0.388
Gapped
Lambda K H
0.267 0.0802 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,821,185
Number of extensions: 1150509
Number of successful extensions: 1822
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1794
Number of HSP's successfully gapped: 136
Length of query: 235
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 141
Effective length of database: 6,768,326
Effective search space: 954333966
Effective search space used: 954333966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.6 bits)