RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7169
(235 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.021
Identities = 25/170 (14%), Positives = 56/170 (32%), Gaps = 23/170 (13%)
Query: 12 TRKFS--NLRNELKRSQEETMKSAKA--KRKSALLLSRHKTDVPARKLQELKLAFSEYYL 67
TR + + + + + LL + D + L L + L
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-YLDCRPQDLPREVLTTNPRRL 330
Query: 68 SLI---------LLQNYQNLNFTGFRKILKKHDKLLNVDVGAKWRAEHVDISHFYVNKDI 118
S+I N++++N I++ +L +R +S F
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE---YRKMFDRLSVF--PPSA 385
Query: 119 NHLISE-TEATVTSELEEGDRQKAMKRLRVPPLGEQQSPWTTFKV-GLFL 166
+ I + + ++ + D + +L L E+Q +T + ++L
Sbjct: 386 H--IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Score = 32.5 bits (73), Expect = 0.12
Identities = 32/214 (14%), Positives = 59/214 (27%), Gaps = 87/214 (40%)
Query: 13 RKFSNLRNELKRSQEET------MKSAKAKRKSALLLSRHKTDVPARKLQELKLAFSEYY 66
+ + LR L + + + K+ + L DV + K+ F ++
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSG---KTWVAL-----DVCLSYKVQCKMDFKIFW 186
Query: 67 LSL-------ILLQNYQNLNFTGFRKILKKHDKLLNVDVGAKWRAEHVDISHFYVNKDIN 119
L+L +L+ Q L D N
Sbjct: 187 LNLKNCNSPETVLEMLQKL----------------------------------LYQIDPN 212
Query: 120 HLISETEATVTSELEEGDRQKAMKRLRVPPLGEQQSPWTTFKVGLFLGCFAILFAIILLR 179
S ++ + +L Q ++RL L + ++ L ++LL
Sbjct: 213 -WTSRSDHSSNIKLRIHSIQAELRRL----LKSKP-----YENCL----------LVLLN 252
Query: 180 VWTERIVALSQILFKVGLFLGCFAILFAIILLRD 213
V + F L C IL + R
Sbjct: 253 VQNAKAWN----AFN----LSC-KIL---LTTRF 274
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog,
transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Length = 466
Score = 30.0 bits (68), Expect = 0.68
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 162 VGLFLGCFAILFAIILLRV--WTERIVALSQILFKV--GLFLGCFAILFAIIL 210
+G+ G F L +V W +R+ L+ G +G ++ +
Sbjct: 253 LGILFGVMGYTFNRGLFKVLDWFDRLPPLATKWKGFLLGSIIGILSLFPLPLT 305
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 1.8
Identities = 17/125 (13%), Positives = 45/125 (36%), Gaps = 32/125 (25%)
Query: 48 TDVPARKLQELKLAFSEY-------YLSLILLQN-YQNLNFTG-------FRKILKKHDK 92
+++ ++Q+ + + +SL+ N +NL +G L+K
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEISLV---NGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 93 LLNVDVGAKWRAEH----VDISHFYVNKDIN-----HLISETEATVTSELEEGDRQKAMK 143
+D + R + S+ ++ + HL+ + +L + + K
Sbjct: 399 PSGLD---QSRIPFSERKLKFSNRFLP--VASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 144 RLRVP 148
+++P
Sbjct: 454 DIQIP 458
>3cz8_A Putative sporulation-specific glycosylase YDHD; structural
genomics, uncharacterized protein, protein struct
initiative, PSI-2; 2.20A {Bacillus subtilis subsp}
Length = 319
Score = 27.4 bits (61), Expect = 3.8
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 79 NFTGF----RKILKKHDKLLNVDVGAKWRAEHVDISHF 112
FTGF R L+ +L + V AK + +
Sbjct: 129 LFTGFLRQLRDRLQAGGYVLTIAVPAKTSDNIPWLRGY 166
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
merolae}
Length = 632
Score = 27.4 bits (61), Expect = 4.2
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 163 GLFLGCFAILFAIILLRVWTER---IVALSQILFKVGLFLGCFAILFAIILLRDGVR 216
G +G LF + ++ R ++ + L A+ + L R
Sbjct: 242 GALMGVLGALFIRCVRSIYELRMRHYPGTNRYFLVGVVALFASALQYPFRLFALDPR 298
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 26.9 bits (59), Expect = 7.0
Identities = 21/145 (14%), Positives = 49/145 (33%), Gaps = 7/145 (4%)
Query: 9 AEATRKFSNLRNELKRSQEETMKSAKAKRKSALLLSRHKTDVPARKLQELKLAFSEYYLS 68
A+A + SN E K + ++ K K+K+ + ++ + P K ++
Sbjct: 640 AKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTS----KPQITDINFQ 695
Query: 69 LILLQNYQNL--NFTGFRKILKKHDKLLNVDVGAKWRAEHVDISHFYVNKDINHLISETE 126
L + N G ++ L G + E+ I++ + H+ S +
Sbjct: 696 CSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHA-FAHIESHLD 754
Query: 127 ATVTSELEEGDRQKAMKRLRVPPLG 151
T + ++ + +
Sbjct: 755 KTPSEYIQWRFQTGEDRETMDRANR 779
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH,
membrane fusion, trafficking, transmembrane, membrane
protein; 3.20A {Pyrococcus horikoshii}
Length = 188
Score = 26.0 bits (58), Expect = 8.9
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 12/62 (19%)
Query: 1 MTFSMEKLAEATRKFSNLRNELKRSQ----EETMKSAKAKRKSALLLSRHKTDVPARKLQ 56
M +M + AEA R+ +R++ E ++A+ R++A ++S H + R LQ
Sbjct: 118 MQKAMARQAEAERE--------RRARITLAEAERQAAEKLREAAEIISEHPMALQLRTLQ 169
Query: 57 EL 58
+
Sbjct: 170 TI 171
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel,
FAB complex, membrane protein; 2.51A {Escherichia coli}
SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A
2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A
2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Length = 465
Score = 26.6 bits (59), Expect = 9.0
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Query: 163 GLFLGCFAILFAIILLRVWTERIVALSQILFKVGLFLGCFAILFAIILL 211
G+ G F +F +L + ++ L AI LL
Sbjct: 259 GIIFGIFGPIFNKWVL--GMQDLLHRVHGGNITKWVLMGGAIGGLCGLL 305
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.388
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,370,313
Number of extensions: 191679
Number of successful extensions: 381
Number of sequences better than 10.0: 1
Number of HSP's gapped: 379
Number of HSP's successfully gapped: 17
Length of query: 235
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 144
Effective length of database: 4,160,982
Effective search space: 599181408
Effective search space used: 599181408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.6 bits)