Query psy7170
Match_columns 137
No_of_seqs 45 out of 47
Neff 2.2
Searched_HMMs 46136
Date Fri Aug 16 20:01:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7170.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7170hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3932|consensus 100.0 1.5E-72 3.3E-77 478.5 7.6 111 18-128 238-348 (357)
2 PF03261 CDK5_activator: Cycli 100.0 6.3E-72 1.4E-76 475.0 5.9 111 17-128 236-346 (346)
3 PF02083 Urotensin_II: Urotens 71.6 1.3 2.7E-05 22.7 -0.0 11 84-94 2-12 (12)
4 PF12241 Enoyl_reductase: Tran 65.7 1.7 3.8E-05 36.8 -0.4 65 63-127 140-221 (237)
5 KOG1151|consensus 62.2 7.9 0.00017 37.1 3.2 46 70-116 702-747 (775)
6 PF00134 Cyclin_N: Cyclin, N-t 50.7 18 0.00038 24.4 2.6 34 37-71 57-90 (127)
7 PF10140 YukC: WXG100 protein 48.7 3.7 7.9E-05 35.9 -1.2 58 25-82 81-153 (359)
8 COG3007 Uncharacterized paraqu 45.2 6.3 0.00014 35.6 -0.3 62 63-127 220-301 (398)
9 PF09027 GTPase_binding: GTPas 42.9 9.9 0.00022 26.8 0.5 14 70-83 5-19 (66)
10 PF07051 OCIA: Ovarian carcino 39.7 9.8 0.00021 29.0 0.0 14 83-96 36-49 (111)
11 cd00043 CYCLIN Cyclin box fold 38.2 25 0.00055 21.1 1.7 33 38-71 29-61 (88)
12 cd00489 Barstar_like Barstar i 33.2 51 0.0011 22.9 2.8 35 43-91 3-37 (85)
13 PLN00214 putative protein; Pro 32.2 72 0.0016 24.7 3.7 48 39-98 66-113 (115)
14 COG1553 DsrE Uncharacterized c 31.4 30 0.00064 27.0 1.5 29 33-61 92-120 (126)
15 smart00385 CYCLIN domain prese 31.0 1.2E+02 0.0025 18.0 3.8 36 36-72 21-56 (83)
16 PF15017 AF1Q: Drug resistance 28.6 23 0.00049 26.0 0.4 11 23-33 72-82 (87)
17 PF04112 Mak10: Mak10 subunit, 27.8 41 0.00089 25.6 1.7 36 25-66 51-90 (168)
18 cd03568 VHS_STAM VHS domain fa 26.7 1.2E+02 0.0026 22.9 4.0 51 79-129 71-136 (144)
19 PLN02341 pfkB-type carbohydrat 25.3 89 0.0019 27.3 3.5 41 59-99 381-428 (470)
20 smart00549 TAFH TAF homology. 25.2 77 0.0017 23.7 2.7 36 35-83 28-63 (92)
21 PF00790 VHS: VHS domain; Int 24.6 85 0.0018 22.9 2.8 33 92-125 108-140 (140)
22 PF03641 Lysine_decarbox: Poss 24.6 43 0.00093 24.4 1.3 51 43-104 60-110 (133)
23 cd03565 VHS_Tom1 VHS domain fa 24.3 85 0.0018 23.5 2.8 35 91-126 104-138 (141)
24 PF08785 Ku_PK_bind: Ku C term 23.1 77 0.0017 23.0 2.3 45 81-126 34-78 (120)
25 PF00767 Poty_coat: Potyvirus 22.2 29 0.00063 29.1 -0.0 15 70-84 109-123 (237)
26 KOG4549|consensus 21.7 67 0.0015 25.8 1.9 16 71-86 23-38 (144)
27 PRK13317 pantothenate kinase; 21.4 80 0.0017 26.2 2.4 31 49-84 72-102 (277)
28 KOG0013|consensus 21.3 37 0.00079 29.0 0.4 20 75-94 37-56 (231)
No 1
>KOG3932|consensus
Probab=100.00 E-value=1.5e-72 Score=478.55 Aligned_cols=111 Identities=65% Similarity=1.124 Sum_probs=108.8
Q ss_pred cccccccccccCchhHHHHHHHHhhccCCcCCCHHHHHHHHHHHHHHhhhccCccccccCcccccccchhHHhHHHHHHH
Q psy7170 18 PHATVDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIV 97 (137)
Q Consensus 18 lQGWQD~aFI~PANvVFvYmL~rd~v~~~~v~se~ELqa~vLTCLYLsYSYMGNEISYPLKPFLve~~ke~FW~rcl~Ii 97 (137)
||||||||||||||||||||||||+++||+++|++||||++|||||||||||||||||||||||||++||+||||||.||
T Consensus 238 LQGWQD~aFInPANlVFvylLvRdvlsg~e~~s~~eLqA~~LtCLYlsYSYMGNEISYPLKPFLVe~dke~FWdRCl~~v 317 (357)
T KOG3932|consen 238 LQGWQDQAFINPANLVFVYLLVRDVLSGEEIHSLEELQAWILTCLYLSYSYMGNEISYPLKPFLVENDKETFWDRCLAMV 317 (357)
T ss_pred hhhccccccccchheehhhhhHHhhcCchhhccHHHHHHHHHHHHHHHHHhhcccccccccceeecccHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccchhccCCcchhHHHHHHHHhcCCCC
Q psy7170 98 NNMSSSMLRINAEPGFFTEIFTELKACGTST 128 (137)
Q Consensus 98 ~~~S~kMLriNadp~fFTevF~eLK~~~~~~ 128 (137)
|++|.+||+||||||||||||+|||+|+.++
T Consensus 318 n~lS~qML~lNadp~fFteVFtdLK~cs~~~ 348 (357)
T KOG3932|consen 318 NSLSRQMLLLNADPHFFTEVFTDLKNCSSSE 348 (357)
T ss_pred HHhhHHHhhhcCCCchHHHHHHHhhhcccch
Confidence 9999999999999999999999999996654
No 2
>PF03261 CDK5_activator: Cyclin-dependent kinase 5 activator protein; InterPro: IPR004944 These proteins are neuron specific activators of cyclin-dependent kinase 5 (CDK5) []. They form a heterodimer with the catalytic subunit (CDK5) [].; GO: 0016534 cyclin-dependent protein kinase 5 activator activity, 0016533 cyclin-dependent protein kinase 5 holoenzyme complex; PDB: 3O0G_D 1H4L_E 1UNH_D 1UNL_E 1UNG_E.
Probab=100.00 E-value=6.3e-72 Score=475.04 Aligned_cols=111 Identities=69% Similarity=1.156 Sum_probs=90.5
Q ss_pred ccccccccccccCchhHHHHHHHHhhccCCcCCCHHHHHHHHHHHHHHhhhccCccccccCcccccccchhHHhHHHHHH
Q psy7170 17 GPHATVDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHI 96 (137)
Q Consensus 17 ~lQGWQD~aFI~PANvVFvYmL~rd~v~~~~v~se~ELqa~vLTCLYLsYSYMGNEISYPLKPFLve~~ke~FW~rcl~I 96 (137)
=||||||||||||||||||||||||+|+++ |+||+||||+||||||||||||||||||||||||||++||+||||||+|
T Consensus 236 Llqgwqd~~fi~pan~vf~yml~r~~~~~~-~~~~~~l~~~~l~cly~sysy~gneisyplkpflv~~~~~~fw~~~~~~ 314 (346)
T PF03261_consen 236 LLQGWQDQAFINPANVVFVYMLCRDVVSGE-VSSERELQAIVLTCLYLSYSYMGNEISYPLKPFLVEESKEAFWDRCLSI 314 (346)
T ss_dssp HHTTS-SS-S--HHHHHHHHHHHHHHS-TT---SHHHHHHHHHHHHHHHHHHH-SSS---SGGG--SS-HHHHHHHHHHH
T ss_pred HhccccccceeccchhhhhHHHHHHhhccc-cCCHHHHHHHHHHHHHHHhhhcCcccccccCCeeecccHHHHHHHHHHH
Confidence 389999999999999999999999999885 7999999999999999999999999999999999999999999999999
Q ss_pred HhhccccchhccCCcchhHHHHHHHHhcCCCC
Q psy7170 97 VNNMSSSMLRINAEPGFFTEIFTELKACGTST 128 (137)
Q Consensus 97 i~~~S~kMLriNadp~fFTevF~eLK~~~~~~ 128 (137)
||++|+||||||+|||||||||+|||+||+.+
T Consensus 315 ~~~~s~~ml~~n~~~~~ft~~~~~lk~~~~~~ 346 (346)
T PF03261_consen 315 INRLSAKMLRINADPHFFTEVFTDLKNEGQSE 346 (346)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHTT----
T ss_pred HHHhhHHHhhhcCCCchHHHHHHHHHhcccCC
Confidence 99999999999999999999999999999753
No 3
>PF02083 Urotensin_II: Urotensin II; InterPro: IPR001483 Urotensin II, a small peptide that contains a disulphide bridge, was originally isolated from the caudal portion of the spinal cord of teleost and elasmobranch fish []. The peptide has also been found in the brain of frogs []. Urotensin II seems to be involved in smooth muscle stimulation.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=71.60 E-value=1.3 Score=22.66 Aligned_cols=11 Identities=36% Similarity=0.951 Sum_probs=8.6
Q ss_pred cchhHHhHHHH
Q psy7170 84 DCKEKFWDRCL 94 (137)
Q Consensus 84 ~~ke~FW~rcl 94 (137)
+..+-||.+|+
T Consensus 2 ~~~~CFWKYCv 12 (12)
T PF02083_consen 2 GKSECFWKYCV 12 (12)
T ss_pred CccchhhhhcC
Confidence 35688999995
No 4
>PF12241 Enoyl_reductase: Trans-2-enoyl-CoA reductase catalytic region; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=65.73 E-value=1.7 Score=36.82 Aligned_cols=65 Identities=23% Similarity=0.437 Sum_probs=33.5
Q ss_pred HHhhhccCccccccCcc-cccccchhHHhHHHHHHHhhccc----------cch------hccCCcchhHHHHHHHHhcC
Q psy7170 63 YLSYSYMGNEISYPLKP-FLVEDCKEKFWDRCLHIVNNMSS----------SML------RINAEPGFFTEIFTELKACG 125 (137)
Q Consensus 63 YLsYSYMGNEISYPLKP-FLve~~ke~FW~rcl~Ii~~~S~----------kML------riNadp~fFTevF~eLK~~~ 125 (137)
=+||||.|.|+.||+=- =-+..-|+..=.....|-.+++. |-| -|-.-|-|..-+|+-+|..|
T Consensus 140 TvAySYIG~~~T~pIY~~GTiG~AK~dLe~ta~~i~~~L~~~~G~A~vsV~KAlVTqAS~aIP~~pLYi~~L~kVMKekG 219 (237)
T PF12241_consen 140 TVAYSYIGPELTWPIYRDGTIGKAKEDLEKTAHAINEKLAAIGGKAYVSVNKALVTQASSAIPVVPLYISLLYKVMKEKG 219 (237)
T ss_dssp EEEEEE---GGGCCCCTTCHHHHHHHHHHHHHHHHHHHHHTTT-EEEEEEE-----TTGGGSTCHHHHHHHHHHHHHHCT
T ss_pred EEEEeccCcccChhhhcCCcHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEehhhhhhhhhcCccHHHHHHHHHHHHHhcC
Confidence 46899999999999721 11333444444444444444442 111 12233667777777777766
Q ss_pred CC
Q psy7170 126 TS 127 (137)
Q Consensus 126 ~~ 127 (137)
.-
T Consensus 220 ~H 221 (237)
T PF12241_consen 220 TH 221 (237)
T ss_dssp --
T ss_pred CC
Confidence 54
No 5
>KOG1151|consensus
Probab=62.18 E-value=7.9 Score=37.10 Aligned_cols=46 Identities=20% Similarity=0.459 Sum_probs=36.9
Q ss_pred CccccccCcccccccchhHHhHHHHHHHhhccccchhccCCcchhHH
Q psy7170 70 GNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTE 116 (137)
Q Consensus 70 GNEISYPLKPFLve~~ke~FW~rcl~Ii~~~S~kMLriNadp~fFTe 116 (137)
.-|+++|-||-. .....+|-.|||.--.+--.+.-++-.||-|.--
T Consensus 702 AtEVqFP~KPvV-sseAkaFIRRCLaYRKeDR~DV~qLA~dpyllPh 747 (775)
T KOG1151|consen 702 ATEVQFPPKPVV-SSEAKAFIRRCLAYRKEDRIDVQQLACDPYLLPH 747 (775)
T ss_pred ceeccCCCCCcc-CHHHHHHHHHHHHhhhhhhhhHHHHccCccccch
Confidence 469999999964 4556789999999888877888888888876653
No 6
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. Cyclins contain two domains of similar all-alpha fold, of which this entry is associated with the N-terminal domain.; PDB: 2W2H_B 3RGF_B 1KXU_A 1JKW_A 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D ....
Probab=50.72 E-value=18 Score=24.43 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=23.0
Q ss_pred HHHHhhccCCcCCCHHHHHHHHHHHHHHhhhccCc
Q psy7170 37 MLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGN 71 (137)
Q Consensus 37 mL~rd~v~~~~v~se~ELqa~vLTCLYLsYSYMGN 71 (137)
.++...+... ......+|-+.+|||++|.-.-..
T Consensus 57 ~~~dr~~~~~-~~~~~~~~li~~~cl~lA~K~~e~ 90 (127)
T PF00134_consen 57 YLFDRFLSKR-PVNRSKLQLIALACLFLASKMEED 90 (127)
T ss_dssp HHHHHHHTTS--TTCCGHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhc-ccccchhhhhhhhHHHHhhhhhcc
Confidence 3344444433 256688999999999999885444
No 7
>PF10140 YukC: WXG100 protein secretion system (Wss), protein YukC; InterPro: IPR018778 Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This protein is designated YukC in Bacillus subtilis and EssB is Staphylococcus aureus. ; PDB: 4ANN_A.
Probab=48.70 E-value=3.7 Score=35.90 Aligned_cols=58 Identities=33% Similarity=0.502 Sum_probs=30.6
Q ss_pred ccccCchhHH-----HHHHHH---hhccCCcCCCH---HHHHHHHHHHHHHhhh----ccCccccccCccccc
Q psy7170 25 AFINPANVVF-----VYMLVR---ELVDGDKIDSE---SQLQAVVLTCLYLSYS----YMGNEISYPLKPFLV 82 (137)
Q Consensus 25 aFI~PANvVF-----vYmL~r---d~v~~~~v~se---~ELqa~vLTCLYLsYS----YMGNEISYPLKPFLv 82 (137)
-|+.|.|+|| +.++-| +.++.-+.+.+ .+.+|.++++|-=-|| |.|..=.+.+.||+-
T Consensus 81 f~l~P~Nl~fd~~~~p~i~hrGi~~~l~P~~~~ee~fl~qyKali~~ll~~k~~Fe~ly~G~~e~~~~~~f~~ 153 (359)
T PF10140_consen 81 FILHPENLVFDKNLMPKILHRGIKEILPPYELDEEDFLKQYKALIIALLDPKYSFEDLYNGSLELLKGSPFLK 153 (359)
T ss_dssp ---SGGGEEE-TTS-EEES--EETTTBS-----HHHHHHHHHHHHHHHH-TT--HHHHHHS-GGG----HHHH
T ss_pred EEEechheEEcCCCCEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHhChhhhcccCHHHH
Confidence 3789999999 566655 77776653322 3678999999987777 457888888888874
No 8
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=45.16 E-value=6.3 Score=35.60 Aligned_cols=62 Identities=24% Similarity=0.345 Sum_probs=36.5
Q ss_pred HHhhhccCccccccCc---------ccc------cc-----cchhHHhHHHHHHHhhccccchhccCCcchhHHHHHHHH
Q psy7170 63 YLSYSYMGNEISYPLK---------PFL------VE-----DCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELK 122 (137)
Q Consensus 63 YLsYSYMGNEISYPLK---------PFL------ve-----~~ke~FW~rcl~Ii~~~S~kMLriNadp~fFTevF~eLK 122 (137)
=++|||||.+|.||+- .=| +. -.-.++=.-|-.+|..-|+- |-.-|-|..-+|+-+|
T Consensus 220 TiAfsYiG~~iT~~IYw~GtiG~AK~DLd~~~~~inekLa~~gG~A~vsVlKavVTqASsa---IP~~plYla~lfkvMK 296 (398)
T COG3007 220 TIAFSYIGEKITHPIYWDGTIGRAKKDLDQKSLAINEKLAALGGGARVSVLKAVVTQASSA---IPMMPLYLAILFKVMK 296 (398)
T ss_pred EEEEEecCCccccceeeccccchhhhcHHHHHHHHHHHHHhcCCCeeeeehHHHHhhhhhc---cccccHHHHHHHHHHH
Confidence 4799999999999961 000 00 01122233344444444442 4455778888888888
Q ss_pred hcCCC
Q psy7170 123 ACGTS 127 (137)
Q Consensus 123 ~~~~~ 127 (137)
+.|.-
T Consensus 297 ekg~H 301 (398)
T COG3007 297 EKGTH 301 (398)
T ss_pred HcCcc
Confidence 87754
No 9
>PF09027 GTPase_binding: GTPase binding; InterPro: IPR015116 The GTPase binding domain binds to the G protein Cdc42, inhibiting both its intrinsic and stimulated GTPase activity. The domain is largely unstructured in the absence of Cdc42 []. ; PDB: 1CF4_B.
Probab=42.94 E-value=9.9 Score=26.76 Aligned_cols=14 Identities=57% Similarity=0.809 Sum_probs=4.1
Q ss_pred CccccccCc-ccccc
Q psy7170 70 GNEISYPLK-PFLVE 83 (137)
Q Consensus 70 GNEISYPLK-PFLve 83 (137)
..|||-||| +|+=.
T Consensus 5 aqeIs~PLk~sFlH~ 19 (66)
T PF09027_consen 5 AQEISVPLKNSFLHT 19 (66)
T ss_dssp STT---S-SS-----
T ss_pred hhhhccccccccccc
Confidence 579999999 88854
No 10
>PF07051 OCIA: Ovarian carcinoma immunoreactive antigen (OCIA); InterPro: IPR009764 This family consists of several ovarian carcinoma immunoreactive antigen (OCIA) and related eukaryotic sequences. The function of this family is unknown [,].
Probab=39.71 E-value=9.8 Score=28.98 Aligned_cols=14 Identities=43% Similarity=0.771 Sum_probs=11.2
Q ss_pred ccchhHHhHHHHHH
Q psy7170 83 EDCKEKFWDRCLHI 96 (137)
Q Consensus 83 e~~ke~FW~rcl~I 96 (137)
|=++|+||.|||=+
T Consensus 36 EC~~ESFwyRslPl 49 (111)
T PF07051_consen 36 ECNEESFWYRSLPL 49 (111)
T ss_pred HHHHhhhHhccCcH
Confidence 44899999999743
No 11
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=38.18 E-value=25 Score=21.12 Aligned_cols=33 Identities=15% Similarity=0.058 Sum_probs=22.9
Q ss_pred HHHhhccCCcCCCHHHHHHHHHHHHHHhhhccCc
Q psy7170 38 LVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGN 71 (137)
Q Consensus 38 L~rd~v~~~~v~se~ELqa~vLTCLYLsYSYMGN 71 (137)
++...+.... -.....|.+..+|||+|--..+.
T Consensus 29 ~~~~~~~~~~-~~~~~~~~ia~a~l~lA~k~~~~ 61 (88)
T cd00043 29 LLDRFLLDYS-VLGRSPSLVAAAALYLAAKVEEI 61 (88)
T ss_pred HHHHHHHhcc-cccCChHHHHHHHHHHHHHHcCC
Confidence 3344443333 34678899999999999887776
No 12
>cd00489 Barstar_like Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it, thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.
Probab=33.23 E-value=51 Score=22.92 Aligned_cols=35 Identities=26% Similarity=0.542 Sum_probs=26.4
Q ss_pred ccCCcCCCHHHHHHHHHHHHHHhhhccCccccccCcccccccchhHHhH
Q psy7170 43 VDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWD 91 (137)
Q Consensus 43 v~~~~v~se~ELqa~vLTCLYLsYSYMGNEISYPLKPFLve~~ke~FW~ 91 (137)
|++..|.|.++++..+-..|=+. +|.|+ |-|+|||
T Consensus 3 id~~~i~~~~~f~~~~~~~l~fp-~~fG~-------------NlDAl~D 37 (85)
T cd00489 3 IDGEDIADWEDFHARLKKKLGFP-DYYGH-------------NLDALWD 37 (85)
T ss_pred EecccCCCHHHHHHHHHHHhCCc-cccCC-------------CHHHHHH
Confidence 56778999999998887776332 44554 8899998
No 13
>PLN00214 putative protein; Provisional
Probab=32.18 E-value=72 Score=24.72 Aligned_cols=48 Identities=15% Similarity=0.361 Sum_probs=34.9
Q ss_pred HHhhccCCcCCCHHHHHHHHHHHHHHhhhccCccccccCcccccccchhHHhHHHHHHHh
Q psy7170 39 VRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVN 98 (137)
Q Consensus 39 ~rd~v~~~~v~se~ELqa~vLTCLYLsYSYMGNEISYPLKPFLve~~ke~FW~rcl~Ii~ 98 (137)
||++|..+ .+=|-.+..-+.=.|.|-|+|=-|=- ..+.-|+.|++|..
T Consensus 66 C~~LVk~G-----K~CH~~LiK~i~~~p~~k~~as~~l~-------kSd~~Wn~Cv~i~~ 113 (115)
T PLN00214 66 CNDLVKEG-----KVCHDTLIKYIADKPMLIAHETEYLK-------KSDDLWNHCVSISK 113 (115)
T ss_pred HHHHHHHh-----hHHHHHHHHHHHcchhhhhhHHHhhc-------ccHhHHHHHHHHhc
Confidence 66666544 35677777777778999998866532 36789999999964
No 14
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=31.44 E-value=30 Score=27.02 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=23.3
Q ss_pred HHHHHHHHhhccCCcCCCHHHHHHHHHHH
Q psy7170 33 VFVYMLVRELVDGDKIDSESQLQAVVLTC 61 (137)
Q Consensus 33 VFvYmL~rd~v~~~~v~se~ELqa~vLTC 61 (137)
..-+=++|++++|-++++..||..++++|
T Consensus 92 ~~~~~~~~nl~~g~~lsgL~eLa~~~~~~ 120 (126)
T COG1553 92 AERLGLASNLIEGFELSGLGELAEATLTA 120 (126)
T ss_pred hhcccchhccccceeeccHHHHHHHHHhc
Confidence 34444667788888999999999999997
No 15
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
Probab=31.02 E-value=1.2e+02 Score=18.02 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=24.2
Q ss_pred HHHHHhhccCCcCCCHHHHHHHHHHHHHHhhhccCcc
Q psy7170 36 YMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNE 72 (137)
Q Consensus 36 YmL~rd~v~~~~v~se~ELqa~vLTCLYLsYSYMGNE 72 (137)
..+++..+....+. ....|.+..+|+|+|--..+..
T Consensus 21 ~~~~~~~l~~~~~~-~~~~~~ia~a~l~lA~k~~~~~ 56 (83)
T smart00385 21 VNLLDRFLSDYKFL-KYSPSLIAAAALYLAAKTEEIP 56 (83)
T ss_pred HHHHHHHHHHhhcc-cCCHHHHHHHHHHHHHHHhcCC
Confidence 34455555422222 2788999999999998887654
No 16
>PF15017 AF1Q: Drug resistance and apoptosis regulator
Probab=28.63 E-value=23 Score=25.96 Aligned_cols=11 Identities=27% Similarity=0.585 Sum_probs=8.7
Q ss_pred ccccccCchhH
Q psy7170 23 DVAFINPANVV 33 (137)
Q Consensus 23 D~aFI~PANvV 33 (137)
+-|+|||+|+=
T Consensus 72 ~gGWITPsNIk 82 (87)
T PF15017_consen 72 GGGWITPSNIK 82 (87)
T ss_pred CCccccchhhh
Confidence 46789999973
No 17
>PF04112 Mak10: Mak10 subunit, NatC N(alpha)-terminal acetyltransferase; InterPro: IPR007244 NatC N(alpha)-terminal acetyltransferases contain Mak10p, Mak31p and Mak3p subunits. All three subunits are associated with each other to form the active complex [].
Probab=27.80 E-value=41 Score=25.61 Aligned_cols=36 Identities=33% Similarity=0.622 Sum_probs=21.8
Q ss_pred ccccCchhHHHH--HHHHhh--ccCCcCCCHHHHHHHHHHHHHHhh
Q psy7170 25 AFINPANVVFVY--MLVREL--VDGDKIDSESQLQAVVLTCLYLSY 66 (137)
Q Consensus 25 aFI~PANvVFvY--mL~rd~--v~~~~v~se~ELqa~vLTCLYLsY 66 (137)
.-.+|..|+-+. ||+.++ +.|. -|-.+|+||+|+--
T Consensus 51 ~~l~~~evi~I~D~Ll~~e~~Wl~G~------sL~qTv~TC~Y~~~ 90 (168)
T PF04112_consen 51 KPLSPEEVIGIMDRLLACEVSWLEGY------SLPQTVFTCLYLHH 90 (168)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHHH
Confidence 445666665543 444433 3333 37789999999843
No 18
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=26.71 E-value=1.2e+02 Score=22.93 Aligned_cols=51 Identities=14% Similarity=0.307 Sum_probs=31.2
Q ss_pred ccccccchhHHhHHHHHHHhhcc-----ccc----------hhccCCcchhHHHHHHHHhcCCCCC
Q psy7170 79 PFLVEDCKEKFWDRCLHIVNNMS-----SSM----------LRINAEPGFFTEIFTELKACGTSTP 129 (137)
Q Consensus 79 PFLve~~ke~FW~rcl~Ii~~~S-----~kM----------LriNadp~fFTevF~eLK~~~~~~~ 129 (137)
+|..+-....|.+...++++... .++ .+-..+-..+.+++..||+.|-.-+
T Consensus 71 ~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L~~~G~~f~ 136 (144)
T cd03568 71 RFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKNDPSLSLMSDLYKKLKNEGPDLV 136 (144)
T ss_pred HHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHcCCCCC
Confidence 45555555666666666665521 112 2223344579999999999998744
No 19
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=25.34 E-value=89 Score=27.27 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=30.2
Q ss_pred HHHHHHhhhccCcccccc----Ccccccc---cchhHHhHHHHHHHhh
Q psy7170 59 LTCLYLSYSYMGNEISYP----LKPFLVE---DCKEKFWDRCLHIVNN 99 (137)
Q Consensus 59 LTCLYLsYSYMGNEISYP----LKPFLve---~~ke~FW~rcl~Ii~~ 99 (137)
-.|--++-+..|.-.++| ++.||-+ +.+..||+-|+.|+++
T Consensus 381 ~a~aA~~v~~~Ga~~~~p~~~ev~~~l~~~~~~~~~~~~~~~~~~~~~ 428 (470)
T PLN02341 381 NAVGAATAMGCGAGRNVATLEKVLELLRASNLNEDDTFWAELLKNSDC 428 (470)
T ss_pred HHHHHHHHcCcCCCCCCCCHHHHHHHHHhcCCCcchhHHHHhhccccc
Confidence 334445567788888888 7778853 4688999999988654
No 20
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=25.24 E-value=77 Score=23.65 Aligned_cols=36 Identities=28% Similarity=0.525 Sum_probs=26.2
Q ss_pred HHHHHHhhccCCcCCCHHHHHHHHHHHHHHhhhccCccccccCcccccc
Q psy7170 35 VYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVE 83 (137)
Q Consensus 35 vYmL~rd~v~~~~v~se~ELqa~vLTCLYLsYSYMGNEISYPLKPFLve 83 (137)
|==|+++++++. -+.+|.+.-+.. ++..|++||||-
T Consensus 28 Vr~LV~~L~~~~--i~~EeF~~~Lq~-----------~lns~~qP~lvP 63 (92)
T smart00549 28 VRTLVLGLVNGT--ITAEEFTSRLQE-----------ALNSPLQPYLIP 63 (92)
T ss_pred HHHHHHHHHhCC--CCHHHHHHHHHH-----------HHcCCCCchhHH
Confidence 445777788765 367777776654 678999999984
No 21
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=24.63 E-value=85 Score=22.88 Aligned_cols=33 Identities=15% Similarity=0.419 Sum_probs=21.1
Q ss_pred HHHHHHhhccccchhccCCcchhHHHHHHHHhcC
Q psy7170 92 RCLHIVNNMSSSMLRINAEPGFFTEIFTELKACG 125 (137)
Q Consensus 92 rcl~Ii~~~S~kMLriNadp~fFTevF~eLK~~~ 125 (137)
+++.+|...+... +-+.+-.+|.+++..||+.|
T Consensus 108 k~l~ll~~W~~~f-~~~~~~~~i~~~y~~Lk~~G 140 (140)
T PF00790_consen 108 KILELLQEWAEAF-KSDPELSLIQDTYKRLKRKG 140 (140)
T ss_dssp HHHHHHHHHHHHT-TTSTTGHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH-CCCCCchHHHHHHHHHHHCc
Confidence 3333333333333 55666778999999999876
No 22
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=24.61 E-value=43 Score=24.37 Aligned_cols=51 Identities=24% Similarity=0.408 Sum_probs=29.9
Q ss_pred ccCCcCCCHHHHHHHHHHHHHHhhhccCccccccCcccccccchhHHhHHHHHHHhhccccc
Q psy7170 43 VDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSM 104 (137)
Q Consensus 43 v~~~~v~se~ELqa~vLTCLYLsYSYMGNEISYPLKPFLve~~ke~FW~rcl~Ii~~~S~kM 104 (137)
++|. +.|.+|+ ..++|-.++... +-+|..+=+. +.||+.++..++++..+.
T Consensus 60 lPGG-~GTl~El-~~~~~~~~l~~~--------~~~Piil~~~-~g~w~~l~~~l~~~~~~g 110 (133)
T PF03641_consen 60 LPGG-IGTLDEL-FEALTLMQLGRH--------NKVPIILLNI-DGFWDPLLEFLDRMIEEG 110 (133)
T ss_dssp ES-S-HHHHHHH-HHHHHHHHTTSS--------TS-EEEEEEC-GGCCHHHHHHHHHHHHTT
T ss_pred EecC-CchHHHH-HHHHHHHhhccc--------cCCCEEEeCC-cchHHHHHHHHHHHHHCC
Confidence 3455 4788888 344444444332 2237665432 239999999997665543
No 23
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=24.33 E-value=85 Score=23.51 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=22.9
Q ss_pred HHHHHHHhhccccchhccCCcchhHHHHHHHHhcCC
Q psy7170 91 DRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGT 126 (137)
Q Consensus 91 ~rcl~Ii~~~S~kMLriNadp~fFTevF~eLK~~~~ 126 (137)
+|++.+|...+. .++-..+-..+.+++..||+.|-
T Consensus 104 ~kil~li~~W~~-~f~~~~~l~~i~~~y~~L~~~G~ 138 (141)
T cd03565 104 EKVLALIQAWAD-AFRGSPDLTGVVEVYEELKKKGI 138 (141)
T ss_pred HHHHHHHHHHHH-HhCCCccchHHHHHHHHHHHcCC
Confidence 455666655553 23333444679999999999874
No 24
>PF08785 Ku_PK_bind: Ku C terminal domain like; InterPro: IPR014893 The non-homologous end joining (NHEJ) pathway is one method by which double stranded breaks in chromosomal DNA are repaired. Ku is a component of a multi-protein complex that is involved in the NHEJ. Ku has affinity for DNA ends and recruits the DNA-dependent protein kinase catalytic subunit (DNA-PKcs). This domain is found at the C-terminal of Ku which binds to DNA-PKcs []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 1RW2_A 1Q2Z_A 3ISM_C.
Probab=23.13 E-value=77 Score=22.99 Aligned_cols=45 Identities=20% Similarity=0.379 Sum_probs=34.4
Q ss_pred ccccchhHHhHHHHHHHhhccccchhccCCcchhHHHHHHHHhcCC
Q psy7170 81 LVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGT 126 (137)
Q Consensus 81 Lve~~ke~FW~rcl~Ii~~~S~kMLriNadp~fFTevF~eLK~~~~ 126 (137)
||.++.+.+.++++.-|..+-...++.+ +|..|++...+||....
T Consensus 34 Lv~~s~~~~y~kalecl~~lR~~~i~~~-ep~~yN~Fl~~LK~~~~ 78 (120)
T PF08785_consen 34 LVSDSGDQNYDKALECLRALREECIEEE-EPDEYNDFLRKLKKKLL 78 (120)
T ss_dssp HHHCSHCHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHH
T ss_pred HHhccCcchHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 3455578889998888888876666655 49999999999998543
No 25
>PF00767 Poty_coat: Potyvirus coat protein; InterPro: IPR001592 This protease is found in genome polyproteins of potyviruses. The genome polyprotein contains: N-terminal protein (P1), helper component protease (3.4.22 from EC, HC-PRO), protein P3, 6KD protein (6K1), cytoplasmic inclusion protein (CI), 6KD protein 2 (6K2), genome-linked protein (VPG), nuclear inclusion protein A (3.4.22 from EC), nuclear inclusion protein B (2.7.7.48 from EC) and coat protein (CP). The coat protein is at the C terminus of the polyprotein.; GO: 0019028 viral capsid
Probab=22.16 E-value=29 Score=29.06 Aligned_cols=15 Identities=40% Similarity=0.973 Sum_probs=11.7
Q ss_pred CccccccCccccccc
Q psy7170 70 GNEISYPLKPFLVED 84 (137)
Q Consensus 70 GNEISYPLKPFLve~ 84 (137)
+..+.||||||+..+
T Consensus 109 ~~Qveypl~P~i~~A 123 (237)
T PF00767_consen 109 EEQVEYPLKPFIENA 123 (237)
T ss_pred ccceeeccHHhhhcC
Confidence 345789999998755
No 26
>KOG4549|consensus
Probab=21.68 E-value=67 Score=25.81 Aligned_cols=16 Identities=38% Similarity=0.746 Sum_probs=12.5
Q ss_pred ccccccCcccccccch
Q psy7170 71 NEISYPLKPFLVEDCK 86 (137)
Q Consensus 71 NEISYPLKPFLve~~k 86 (137)
--..||+|||.-+..+
T Consensus 23 thl~~pfkP~k~~~g~ 38 (144)
T KOG4549|consen 23 THLDYPFKPFKCECGS 38 (144)
T ss_pred ecccccccccccCccc
Confidence 3467999999987753
No 27
>PRK13317 pantothenate kinase; Provisional
Probab=21.36 E-value=80 Score=26.20 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHHHhhhccCccccccCccccccc
Q psy7170 49 DSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVED 84 (137)
Q Consensus 49 ~se~ELqa~vLTCLYLsYSYMGNEISYPLKPFLve~ 84 (137)
..+.|++|.+.-..|+. +|+..|++||++++
T Consensus 72 ~~v~E~~a~~~g~~~l~-----~~~~~~~~~~~i~~ 102 (277)
T PRK13317 72 AEFVEFEATGLGVRYLL-----KEEGHDLNDYIFTN 102 (277)
T ss_pred eeeHHHHHHHHHHHHHH-----HhcCCCCCcEEEEE
Confidence 34899999999999887 56789999999866
No 28
>KOG0013|consensus
Probab=21.30 E-value=37 Score=29.03 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=14.8
Q ss_pred ccCcccccccchhHHhHHHH
Q psy7170 75 YPLKPFLVEDCKEKFWDRCL 94 (137)
Q Consensus 75 YPLKPFLve~~ke~FW~rcl 94 (137)
|||--=-++..|+.|||.|-
T Consensus 37 ~~lT~gqlrskRdEFWdTap 56 (231)
T KOG0013|consen 37 PPLTKGQLRSKRDEFWDTAP 56 (231)
T ss_pred CCcchhhhhhhhhhhhhccc
Confidence 45544456778999999994
Done!