Query psy7170
Match_columns 137
No_of_seqs 45 out of 47
Neff 2.2
Searched_HMMs 29240
Date Fri Aug 16 20:01:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7170.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7170hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o0g_D Cyclin-dependent kinase 100.0 1.5E-77 5.3E-82 463.6 6.9 107 18-125 43-149 (149)
2 1unl_D Cyclin-dependent kinase 100.0 5.9E-75 2E-79 466.5 7.3 112 18-130 88-199 (208)
3 1f8v_D Mature capsid protein g 42.7 13 0.00044 23.4 1.8 15 88-102 2-16 (40)
4 4ann_A ESSB; membrane protein, 35.5 5.5 0.00019 31.2 -0.9 57 26-82 104-175 (215)
5 2h7b_A Core-binding factor, ML 29.9 45 0.0015 24.4 3.2 36 35-83 31-66 (105)
6 1nov_D Nodamura virus coat pro 29.5 19 0.00064 23.0 1.0 15 88-102 2-16 (44)
7 2z2q_B Coat protein gamma; wil 28.5 21 0.0007 22.8 1.1 15 88-102 2-16 (44)
8 3pg6_A E3 ubiquitin-protein li 24.5 36 0.0012 26.4 2.0 20 107-126 139-158 (159)
9 2jrh_A Mitogen-activated prote 23.3 19 0.00066 26.0 0.3 46 50-102 25-72 (94)
10 1c9b_A General transcription f 22.4 83 0.0028 22.5 3.5 64 51-118 44-109 (207)
11 3dt5_A Uncharacterized protein 22.0 55 0.0019 24.5 2.5 26 54-79 101-126 (135)
12 1mhq_A ADP-ribosylation factor 21.7 82 0.0028 22.7 3.4 44 88-135 102-145 (148)
13 1g3n_C V-cyclin; cyclin-depend 21.1 99 0.0034 23.1 3.8 62 39-104 79-146 (257)
14 1nro_R Receptor based peptide 20.1 20 0.0007 20.7 -0.1 15 78-92 4-21 (27)
15 2ou6_A Hypothetical protein; s 20.0 71 0.0024 21.9 2.7 39 73-112 16-67 (190)
No 1
>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: a.74.1.1 PDB: 1h4l_D
Probab=100.00 E-value=1.5e-77 Score=463.55 Aligned_cols=107 Identities=63% Similarity=1.137 Sum_probs=105.0
Q ss_pred cccccccccccCchhHHHHHHHHhhccCCcCCCHHHHHHHHHHHHHHhhhccCccccccCcccccccchhHHhHHHHHHH
Q psy7170 18 PHATVDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIV 97 (137)
Q Consensus 18 lQGWQD~aFI~PANvVFvYmL~rd~v~~~~v~se~ELqa~vLTCLYLsYSYMGNEISYPLKPFLve~~ke~FW~rcl~Ii 97 (137)
||||||||||||||||||||||||+|+++ ++||+||||+|||||||||||||||||||||||||+++||+|||||++||
T Consensus 43 lQGWQD~~Fi~PanvVFvYmL~r~~v~~~-~~se~eLqa~~lTCLYlsYSYmGNEISYPLKPFlv~~~k~~FW~rcl~ii 121 (149)
T 3o0g_D 43 LQGWQDQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLVESCKEAFWDRCLSVI 121 (149)
T ss_dssp HHTSCSSCSCCHHHHHHHHHHHHHHSCTT-CCSHHHHHHHHHHHHHHHHHHHCSSSCCCSGGGCCCSCHHHHHHHHHHHH
T ss_pred HccchhcccccchHHHHHHHHHHHHcccc-cCCHHHHHHHHHHHHHHHHHHhcccccccCcchhhcccHHHHHHHHHHHH
Confidence 79999999999999999999999999866 79999999999999999999999999999999999999999999999999
Q ss_pred hhccccchhccCCcchhHHHHHHHHhcC
Q psy7170 98 NNMSSSMLRINAEPGFFTEIFTELKACG 125 (137)
Q Consensus 98 ~~~S~kMLriNadp~fFTevF~eLK~~~ 125 (137)
|++|+||||||+|||||||||+|||++|
T Consensus 122 n~~S~~ML~iN~dp~~Ftevf~eLK~~~ 149 (149)
T 3o0g_D 122 NLMSSKMLQINADPHYFTQVFSDLKNES 149 (149)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHTTC
T ss_pred HhhchhhheecCCccHHHHHHHHHhhcC
Confidence 9999999999999999999999999986
No 2
>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegen diseases; HET: RRC; 2.2A {Homo sapiens} SCOP: a.74.1.1 PDB: 1unh_D* 1ung_D*
Probab=100.00 E-value=5.9e-75 Score=466.54 Aligned_cols=112 Identities=60% Similarity=1.081 Sum_probs=105.5
Q ss_pred cccccccccccCchhHHHHHHHHhhccCCcCCCHHHHHHHHHHHHHHhhhccCccccccCcccccccchhHHhHHHHHHH
Q psy7170 18 PHATVDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIV 97 (137)
Q Consensus 18 lQGWQD~aFI~PANvVFvYmL~rd~v~~~~v~se~ELqa~vLTCLYLsYSYMGNEISYPLKPFLve~~ke~FW~rcl~Ii 97 (137)
||||||||||||||||||||||||+|+++ ++||+||||+||||||||||||||||||||||||||++||+|||||+.||
T Consensus 88 LQGWQD~aFI~PaNvVFvYmL~R~~v~~~-~~te~eLqa~vLTCLYlsYSYmGNEISYPLKPFlve~~ke~FWdRCl~ii 166 (208)
T 1unl_D 88 LQGWQDQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLVESCKEAFWDRCLSVI 166 (208)
T ss_dssp HTTSCSSCSCCHHHHHHHHHHHHHHSCTT-CCCHHHHHHHHHHHHHHHHHHHCSSSCCCSGGGCCSSCHHHHHHHHHHHH
T ss_pred HccccccccccchhhhhHHHHHHHHcccc-cCCHHHHHHHHHHHHHHHHHhhCccccccCcceeecCCHHHHHHHHHHHH
Confidence 79999999999999999999999999766 79999999999999999999999999999999999999999999999999
Q ss_pred hhccccchhccCCcchhHHHHHHHHhcCCCCCC
Q psy7170 98 NNMSSSMLRINAEPGFFTEIFTELKACGTSTPS 130 (137)
Q Consensus 98 ~~~S~kMLriNadp~fFTevF~eLK~~~~~~~~ 130 (137)
|++|+||||||+|||||||||+|||+|+.++.+
T Consensus 167 ~~~S~kML~iN~~p~~Ftevf~eLK~~~~~~~~ 199 (208)
T 1unl_D 167 NLMSSKMLQINADPHYFTQVFSDLKNESGQEDK 199 (208)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHTTC-----
T ss_pred HhhchhhheecCCccHHHHHHHHHHhcccccch
Confidence 999999999999999999999999999987654
No 3
>1f8v_D Mature capsid protein gamma; nodavirus, coat protein, nucleoprotein, protein-RNA interactions, RNA duplex, RNA CAGE, gamma polypeptide; 3.00A {Pariacato virus} SCOP: b.121.4.4
Probab=42.72 E-value=13 Score=23.38 Aligned_cols=15 Identities=40% Similarity=1.004 Sum_probs=12.6
Q ss_pred HHhHHHHHHHhhccc
Q psy7170 88 KFWDRCLHIVNNMSS 102 (137)
Q Consensus 88 ~FW~rcl~Ii~~~S~ 102 (137)
.||+|..+|++.-++
T Consensus 2 ~mWErVk~ilks~l~ 16 (40)
T 1f8v_D 2 KFWEGVLRVLNQISG 16 (40)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHHHH
Confidence 699999999987654
No 4
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=35.51 E-value=5.5 Score=31.25 Aligned_cols=57 Identities=21% Similarity=0.240 Sum_probs=39.3
Q ss_pred cccCchhHHHHHH-----HH---hhccCCcCC---CHHHHHHHHHHHHHHhhhcc----CccccccCccccc
Q psy7170 26 FINPANVVFVYML-----VR---ELVDGDKID---SESQLQAVVLTCLYLSYSYM----GNEISYPLKPFLV 82 (137)
Q Consensus 26 FI~PANvVFvYmL-----~r---d~v~~~~v~---se~ELqa~vLTCLYLsYSYM----GNEISYPLKPFLv 82 (137)
|+.|+|+||-=.+ -| +.+...+.+ =..+.+|.+++||-=-|||+ |++=.+-..||+-
T Consensus 104 ~L~P~NL~f~~~~~p~i~~RGik~~l~P~~~~ee~fL~qyKAliiall~~K~~Fe~l~~G~lel~k~~~f~~ 175 (215)
T 4ann_A 104 VLAPDELFFTRDGLPIAKTRGLQNVVDPLPVSEAEFLTRYKALVICAFNEKQSFDALVEGNLELHKGTPFET 175 (215)
T ss_dssp CCSGGGEEECTTSCEEESCCEETTTBSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHSCGGGCCCCHHHH
T ss_pred EEecceEEEcCCCCEEEEEccCccCCCCCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHcChHhhccCCHHHH
Confidence 7899999995444 34 446555422 24577999999998888875 5555566677763
No 5
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=29.94 E-value=45 Score=24.37 Aligned_cols=36 Identities=25% Similarity=0.496 Sum_probs=27.1
Q ss_pred HHHHHHhhccCCcCCCHHHHHHHHHHHHHHhhhccCccccccCcccccc
Q psy7170 35 VYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVE 83 (137)
Q Consensus 35 vYmL~rd~v~~~~v~se~ELqa~vLTCLYLsYSYMGNEISYPLKPFLve 83 (137)
|=-|+++++++. -+.+|.+.-+.. |+..|++||||-
T Consensus 31 Vr~LVq~Ll~~~--i~~EeFt~~Lq~-----------~lns~pqP~lvP 66 (105)
T 2h7b_A 31 VRTLVLGLVNST--LTIEEFHSKLQE-----------ATNFPLRPFVIP 66 (105)
T ss_dssp HHHHHHHHHTSS--CCHHHHHHHHHH-----------HSSSSCCSSSHH
T ss_pred HHHHHHHHHhCC--CCHHHHHHHHHH-----------HhcCCCCcchhH
Confidence 456788888765 377787777654 678999999984
No 6
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=29.51 E-value=19 Score=23.03 Aligned_cols=15 Identities=27% Similarity=0.647 Sum_probs=12.5
Q ss_pred HHhHHHHHHHhhccc
Q psy7170 88 KFWDRCLHIVNNMSS 102 (137)
Q Consensus 88 ~FW~rcl~Ii~~~S~ 102 (137)
.||+|..+|++.-++
T Consensus 2 ~mWErVk~ilks~l~ 16 (44)
T 1nov_D 2 TFWERVRSILKSGLN 16 (44)
T ss_pred cHHHHHHHHHHHHHH
Confidence 599999999987554
No 7
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=28.48 E-value=21 Score=22.85 Aligned_cols=15 Identities=20% Similarity=0.609 Sum_probs=12.5
Q ss_pred HHhHHHHHHHhhccc
Q psy7170 88 KFWDRCLHIVNNMSS 102 (137)
Q Consensus 88 ~FW~rcl~Ii~~~S~ 102 (137)
.||+|..+|++.-++
T Consensus 2 ~~WErVk~ilks~l~ 16 (44)
T 2z2q_B 2 SMWERVKSIIKSSLA 16 (44)
T ss_pred cHHHHHHHHHHHHHH
Confidence 599999999987654
No 8
>3pg6_A E3 ubiquitin-protein ligase DTX3L; DNA-damage, metal-binding, nucleus, phosphorylation, chromatin regulator, UBL conjugation pathway, zinc-finger; HET: CIT; 1.70A {Homo sapiens}
Probab=24.52 E-value=36 Score=26.39 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=16.7
Q ss_pred ccCCcchhHHHHHHHHhcCC
Q psy7170 107 INAEPGFFTEIFTELKACGT 126 (137)
Q Consensus 107 iNadp~fFTevF~eLK~~~~ 126 (137)
.=-||.|+++|-+||++.|-
T Consensus 139 GYPDp~YL~rV~~EL~akGI 158 (159)
T 3pg6_A 139 GYPDPSYLKRVKEELKAKGI 158 (159)
T ss_dssp CSCCTTHHHHHHHHHHHTTC
T ss_pred CCCCcHHHHHHHHHHHHhCC
Confidence 34589999999999998763
No 9
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=23.28 E-value=19 Score=26.02 Aligned_cols=46 Identities=30% Similarity=0.384 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHH--HHhhhccCccccccCcccccccchhHHhHHHHHHHhhccc
Q psy7170 50 SESQLQAVVLTCL--YLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSS 102 (137)
Q Consensus 50 se~ELqa~vLTCL--YLsYSYMGNEISYPLKPFLve~~ke~FW~rcl~Ii~~~S~ 102 (137)
.-+|||.-+-+.. =|..-||.||++-|||-= + =-||.+.++++-|+
T Consensus 25 kf~dl~qkv~~afGq~ldl~y~nnEL~iPL~~Q------~-DLDkAvelLDrs~~ 72 (94)
T 2jrh_A 25 KYEDVEHKVTTVFGQPLDLHYMNNELSILLKNQ------D-DLDKAIDILDRSSS 72 (94)
T ss_dssp CHHHHHHHHHHHHCSSEEEEEECSSCEEECCSH------H-HHHHHHHHHHHSTT
T ss_pred cHHHHHHHHHHHhCCeeeeEEecceeEEeccCH------H-HHHHHHHHhccCcc
Confidence 4567777666543 245569999999999832 1 13677777776553
No 10
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=22.44 E-value=83 Score=22.54 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhhhccCccccccCcccc--cccchhHHhHHHHHHHhhccccchhccCCcchhHHHH
Q psy7170 51 ESQLQAVVLTCLYLSYSYMGNEISYPLKPFL--VEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIF 118 (137)
Q Consensus 51 e~ELqa~vLTCLYLsYSYMGNEISYPLKPFL--ve~~ke~FW~rcl~Ii~~~S~kMLriNadp~fFTevF 118 (137)
....+.+..+|||+|--+-+. .-.+|=|. ..-++..+|..=..|+..+.-++ ...+|+-|-.-|
T Consensus 44 ~~~~~~v~aaclylAcK~ee~--p~~l~di~~~~~~~~~~i~~~~~~ll~~L~~~l--~~~~p~~~l~r~ 109 (207)
T 1c9b_A 44 GRANDAIASACLYIACRQEGV--PRTFKEICAVSRISKKEIGRCFKLILKALETSV--DLITTGDFMSRF 109 (207)
T ss_dssp TSCHHHHHHHHHHHHHHHTTC--CCCHHHHHHTSSSCHHHHHHHHHHHHHHTTCCC--CCCCTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCc--CcCCHHHHHHHH
Confidence 345899999999999988653 22333322 12355666654445555555433 224555444333
No 11
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=22.03 E-value=55 Score=24.54 Aligned_cols=26 Identities=42% Similarity=0.526 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhhccCccccccCcc
Q psy7170 54 LQAVVLTCLYLSYSYMGNEISYPLKP 79 (137)
Q Consensus 54 Lqa~vLTCLYLsYSYMGNEISYPLKP 79 (137)
|-..+|-.|==-|.-.|.|||-|=||
T Consensus 101 lweeflevlkeyytlsgteislpekp 126 (135)
T 3dt5_A 101 LWEEFLEVLKEYYTLSGTEISLPEKP 126 (135)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred HHHHHHHHHHHHhcccCcEecCCCCC
Confidence 44556777766788899999999999
No 12
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=21.74 E-value=82 Score=22.65 Aligned_cols=44 Identities=16% Similarity=0.176 Sum_probs=27.9
Q ss_pred HHhHHHHHHHhhccccchhccCCcchhHHHHHHHHhcCCCCCCCCCCC
Q psy7170 88 KFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTSTPSTGLAP 135 (137)
Q Consensus 88 ~FW~rcl~Ii~~~S~kMLriNadp~fFTevF~eLK~~~~~~~~~g~~p 135 (137)
.--++|+.+|..-+.. .-.+|. +.+++..||+.|-.-+....++
T Consensus 102 ~Vk~kil~li~~W~~~---f~~~p~-i~~~y~~Lk~~G~~Fp~~~~~~ 145 (148)
T 1mhq_A 102 KVKGRVIEILFSWTVW---FPEDIK-IRDAYQMLKKQGIIKQDPKLPV 145 (148)
T ss_dssp HHHHHHHHHHHHHHHH---CTTCHH-HHHHHHHHHHTTSSCSCCCC--
T ss_pred HHHHHHHHHHHHHHHH---cCCCch-HHHHHHHHHHcCCCCCCCCCCC
Confidence 3344566666655543 235777 8999999999998655544443
No 13
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=21.10 E-value=99 Score=23.12 Aligned_cols=62 Identities=11% Similarity=0.194 Sum_probs=35.8
Q ss_pred HHhhccCCcCCCHHHHHHHHHHHHHHhhhccCcccccc--Cccccc--c--cchhHHhHHHHHHHhhccccc
Q psy7170 39 VRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYP--LKPFLV--E--DCKEKFWDRCLHIVNNMSSSM 104 (137)
Q Consensus 39 ~rd~v~~~~v~se~ELqa~vLTCLYLsYSYMGNEISYP--LKPFLv--e--~~ke~FW~rcl~Ii~~~S~kM 104 (137)
+...+.... -....+|.+-.||||||--| +|+ +| ++-|.. + -.++.+.+-=..|++.+.=++
T Consensus 79 ~DRfls~~~-v~~~~lqLv~~acl~iA~K~--eE~-~~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~L~~~l 146 (257)
T 1g3n_C 79 LDRLLLIKQ-VSKEHFQKTGSACLLVASKL--RSL-TPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRT 146 (257)
T ss_dssp HHHHTTTCC-CCHHHHHHHHHHHHHHHHHH--HCS-SCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHccCC-CCHHHHHHHHHHHHHHHHHH--ccc-cCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCcC
Confidence 344444333 46789999999999999887 344 23 222321 1 144555555555555555443
No 14
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=20.13 E-value=20 Score=20.73 Aligned_cols=15 Identities=40% Similarity=1.052 Sum_probs=10.6
Q ss_pred ccccccc---chhHHhHH
Q psy7170 78 KPFLVED---CKEKFWDR 92 (137)
Q Consensus 78 KPFLve~---~ke~FW~r 92 (137)
+|||..+ ..+.||..
T Consensus 4 rpfllrnpndkyepfwed 21 (27)
T 1nro_R 4 RPFLLRNPNDKYEPFWED 21 (27)
T ss_pred ccccccCCCcccCccccc
Confidence 7999843 56778863
No 15
>2ou6_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.80A {Deinococcus radiodurans} SCOP: a.213.1.2
Probab=20.03 E-value=71 Score=21.95 Aligned_cols=39 Identities=23% Similarity=0.114 Sum_probs=24.8
Q ss_pred cc--ccCccc-----------ccccchhHHhHHHHHHHhhccccchhccCCcc
Q psy7170 73 IS--YPLKPF-----------LVEDCKEKFWDRCLHIVNNMSSSMLRINAEPG 112 (137)
Q Consensus 73 IS--YPLKPF-----------Lve~~ke~FW~rcl~Ii~~~S~kMLriNadp~ 112 (137)
|+ ||+.|| |++. -+.-.++-+..+..+|..-|+--..|.
T Consensus 16 ~~~~~~ig~~~~~~~~~~~~~l~~~-l~~~~~~l~~~l~~L~eeql~~~~~~~ 67 (190)
T 2ou6_A 16 SERAYFVQPDADPAFTPHIGALVEM-LTYARLTTLQAVEGLPEDQLWATAPGF 67 (190)
T ss_dssp SGGGGCCCTTSCTTSCHHHHHHHHH-HHHHHHHHHHHHTTCCGGGTTCCBTTB
T ss_pred cccceeeeeccccCCCHHHHHHHHH-HHHHHHHHHHHHcCCCHHHHhcCCCCC
Confidence 66 999999 2221 122345567778888888777655443
Done!