RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7170
         (137 letters)



>gnl|CDD|217461 pfam03261, CDK5_activator, Cyclin-dependent kinase 5 activator
           protein. 
          Length = 314

 Score =  203 bits (518), Expect = 2e-66
 Identities = 72/105 (68%), Positives = 90/105 (85%), Gaps = 1/105 (0%)

Query: 23  DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
           D AFI PANVVFVY+L R+++ G+ + +E +LQA +LTCLYLSYSYMGNEISYPLKPFLV
Sbjct: 210 DQAFITPANVVFVYLLCRDVLSGE-VATEHELQAWLLTCLYLSYSYMGNEISYPLKPFLV 268

Query: 83  EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTS 127
           E+ KE FWDRCL I+N++SS MLRINA+P FFT++FT+LK  G+S
Sbjct: 269 ENDKEAFWDRCLAIINSLSSKMLRINADPHFFTQVFTDLKNEGSS 313


>gnl|CDD|176916 cd08907, START_STARD8-like, C-terminal lipid-binding START domain
           of mammalian STARD8 and related proteins, which also
           have an N-terminal Rho GTPase-activating protein
           (RhoGAP) domain.  This subgroup includes the
           steroidogenic acute regulatory protein (StAR)-related
           lipid transfer (START) domains of STARD8 (also known as
           deleted in liver cancer 3/DLC3, and Arhgap38) and
           related proteins. It belongs to the START domain family,
           and in turn to the SRPBCC
           (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain
           superfamily of proteins that bind hydrophobic ligands.
           SRPBCC domains have a deep hydrophobic ligand-binding
           pocket. Proteins belonging to this subfamily also have a
           RhoGAP domain. The precise function of the START domain
           in this subgroup is unclear.
          Length = 205

 Score = 26.4 bits (58), Expect = 4.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 37  MLVRELVDGDKIDSESQLQAVVLTCLYL 64
           +LV + VD D    E+ ++AV+LT  YL
Sbjct: 129 LLVSQSVDHDNPQLEAGVRAVLLTSQYL 156


>gnl|CDD|219347 pfam07247, AATase, Alcohol acetyltransferase.  This family contains
           a number of alcohol acetyltransferase (EC:2.3.1.84)
           enzymes approximately 500 residues long found in both
           bacteria and metazoa. These catalyze the esterification
           of isoamyl alcohol by acetyl coenzyme A.
          Length = 479

 Score = 26.2 bits (58), Expect = 6.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 70  GNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSM 104
           G     P+ PF +++ KE FWD   +    +S ++
Sbjct: 332 GVHFIPPISPFSIQESKEDFWDLVEYYHQRLSKAI 366


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0594    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,910,435
Number of extensions: 590514
Number of successful extensions: 426
Number of sequences better than 10.0: 1
Number of HSP's gapped: 425
Number of HSP's successfully gapped: 10
Length of query: 137
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 50
Effective length of database: 7,078,804
Effective search space: 353940200
Effective search space used: 353940200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)