RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7170
         (137 letters)



>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue,
           neurodegen diseases; HET: RRC; 2.2A {Homo sapiens} SCOP:
           a.74.1.1 PDB: 1unh_D* 1ung_D*
          Length = 208

 Score =  184 bits (468), Expect = 1e-60
 Identities = 68/112 (60%), Positives = 86/112 (76%), Gaps = 1/112 (0%)

Query: 23  DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
           D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYSYMGNEISYPLKPFLV
Sbjct: 93  DQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLV 151

Query: 83  EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTSTPSTGLA 134
           E CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK          L 
Sbjct: 152 ESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLKNESGQEDKKRLL 203


>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex,
           kinase inhibitor complex, transferase-transferase
           activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB:
           1h4l_D
          Length = 149

 Score =  178 bits (454), Expect = 3e-59
 Identities = 67/102 (65%), Positives = 85/102 (83%), Gaps = 1/102 (0%)

Query: 23  DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
           D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYSYMGNEISYPLKPFLV
Sbjct: 48  DQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLV 106

Query: 83  EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKAC 124
           E CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK  
Sbjct: 107 ESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLKNE 148


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 30.6 bits (68), Expect = 0.18
 Identities = 18/152 (11%), Positives = 49/152 (32%), Gaps = 31/152 (20%)

Query: 4   ELEEKD-EEYMYLYGPHATVDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCL 62
             + KD ++          +D   ++   V     L   L+       E  +Q  V   L
Sbjct: 32  NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS----KQEEMVQKFVEEVL 87

Query: 63  YLSYSYMGNEISY-PLKPFLV----EDCKEKFWD-----------RCLHIVNNMSSSMLR 106
            ++Y ++ + I     +P ++     + +++ ++           R L     +  ++L 
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR-LQPYLKLRQALLE 146

Query: 107 INAEPGFFTEIFTE-LKACGTSTPSTGLAPSA 137
           +         +  + +   G +     +A   
Sbjct: 147 LRPAKN----VLIDGVLGSGKTW----VALDV 170


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl RED
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 1688

 Score = 29.1 bits (65), Expect = 0.48
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 19/59 (32%)

Query: 79   PFLVEDCKEKFWDRCLHIVNNMSS--SMLRINAE-PGFFTEIFTELKACGTSTPSTGLA 134
              L E             +N MS+  +ML I++  P     I T + AC TS  S  + 
Sbjct: 1074 DILQE-----------SFINTMSAWVNMLLISSSGP-----IKTPVGACATSVESVDIG 1116


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.4 bits (62), Expect = 0.60
 Identities = 8/29 (27%), Positives = 10/29 (34%), Gaps = 12/29 (41%)

Query: 7  EKD-----EEYMYLYGPHATVDVAFINPA 30
          EK      +  + LY      D A   PA
Sbjct: 18 EKQALKKLQASLKLYAD----DSA---PA 39


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.9 bits (59), Expect = 2.3
 Identities = 23/148 (15%), Positives = 46/148 (31%), Gaps = 45/148 (30%)

Query: 19  HATVDVAFINPANVVFVYMLVRE------------LVDGDKIDSESQLQAVVLTCLYLSY 66
           H +++   + P    F+   ++E                D+  + ++L        +L Y
Sbjct: 13  HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG-----KFLGY 67

Query: 67  SYMGNEISYPLKPFLVEDCKEKFWDRCLHIV-NNMSSSMLR---INA--------EPGFF 114
                 +S      LVE  K   +D+ L++      +  L    I+A             
Sbjct: 68  ------VSS-----LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116

Query: 115 TEIFTELK----ACGTS-TPSTGLAPSA 137
            +    +K    A   +  P    + SA
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSA 144


>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like,
           FTS mutant suppressor; 1.90A {Escherichia coli} PDB:
           2uxv_A
          Length = 451

 Score = 25.7 bits (56), Expect = 6.9
 Identities = 4/25 (16%), Positives = 7/25 (28%)

Query: 14  YLYGPHATVDVAFINPANVVFVYML 38
                   + V F  P+   F +  
Sbjct: 397 VWVDGQVELLVYFGQPSWAHFPFYF 421


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,074,583
Number of extensions: 110109
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 16
Length of query: 137
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 53
Effective length of database: 4,356,429
Effective search space: 230890737
Effective search space used: 230890737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)