RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7170
         (137 letters)



>d1unld_ a.74.1.1 (D:) CDK5 activator 1 (NCK5a, p25) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 150

 Score =  190 bits (483), Expect = 6e-64
 Identities = 67/103 (65%), Positives = 85/103 (82%), Gaps = 1/103 (0%)

Query: 23  DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
           D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYSYMGNEISYPLKPFLV
Sbjct: 48  DQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLV 106

Query: 83  EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACG 125
           E CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK   
Sbjct: 107 ESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLKNES 149


>d2aj6a1 d.108.1.1 (A:1-118) Hypothetical protein MW0638
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 118

 Score = 25.6 bits (55), Expect = 1.7
 Identities = 10/80 (12%), Positives = 28/80 (35%)

Query: 9   DEEYMYLYGPHATVDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSY 68
               + +   +  +     +  + +++Y    +L+        ++   V +  LY+   +
Sbjct: 31  KCTKLSIALRYEMICSRLEHTNDKIYIYENEGQLIAFIWGHFSNEKSMVNIELLYVEPQF 90

Query: 69  MGNEISYPLKPFLVEDCKEK 88
               I+  LK  L +  K  
Sbjct: 91  RKLGIATQLKIALEKWAKTM 110


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0453    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 509,286
Number of extensions: 21755
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 2
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.0 bits)