Query psy7171
Match_columns 146
No_of_seqs 47 out of 49
Neff 2.2
Searched_HMMs 29240
Date Fri Aug 16 20:03:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7171.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7171hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o0g_D Cyclin-dependent kinase 100.0 1.5E-85 5E-90 512.4 7.1 123 11-134 25-149 (149)
2 1unl_D Cyclin-dependent kinase 100.0 1.3E-82 4.5E-87 515.0 7.5 128 11-139 70-199 (208)
3 2w96_A G1/S-specific cyclin-D1 39.2 33 0.0011 26.2 4.1 58 14-79 58-115 (271)
4 1f8v_D Mature capsid protein g 38.5 16 0.00054 23.2 1.8 15 97-111 2-16 (40)
5 2b9r_A Human cyclin B1; cell c 33.8 43 0.0015 25.7 3.9 88 15-113 40-133 (269)
6 2h7b_A Core-binding factor, ML 29.3 49 0.0017 24.4 3.4 37 43-92 30-66 (105)
7 2jrh_A Mitogen-activated prote 27.6 15 0.0005 26.9 0.3 46 59-111 25-72 (94)
8 1nov_D Nodamura virus coat pro 25.8 23 0.00078 22.8 0.9 15 97-111 2-16 (44)
9 3pg6_A E3 ubiquitin-protein li 25.5 34 0.0011 26.8 2.0 20 116-135 139-158 (159)
10 3dt5_A Uncharacterized protein 25.5 42 0.0014 25.4 2.5 26 63-88 101-126 (135)
11 1w98_B Cyclin E, G1/S-specific 25.4 49 0.0017 25.8 3.0 66 59-129 89-160 (283)
12 2z2q_B Coat protein gamma; wil 25.3 24 0.00083 22.7 1.0 15 97-111 2-16 (44)
13 4ann_A ESSB; membrane protein, 24.1 6.1 0.00021 31.3 -2.5 57 35-91 104-175 (215)
14 1x5b_A Signal transducing adap 24.0 1E+02 0.0034 22.7 4.3 46 88-136 86-149 (163)
15 1mhq_A ADP-ribosylation factor 23.6 67 0.0023 23.3 3.3 42 98-143 103-144 (148)
16 2ou6_A Hypothetical protein; s 22.2 58 0.002 22.6 2.6 39 82-121 16-67 (190)
17 1nro_R Receptor based peptide 20.9 20 0.00067 21.0 -0.1 15 87-101 4-21 (27)
18 1c9b_A General transcription f 20.5 1.1E+02 0.0037 22.1 3.8 64 60-127 44-109 (207)
19 3g2s_A C-terminal fragment of 20.5 54 0.0019 24.1 2.2 32 100-135 115-146 (149)
20 2npt_B Mitogen-activated prote 20.3 21 0.00071 26.3 -0.1 45 59-110 41-87 (100)
No 1
>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: a.74.1.1 PDB: 1h4l_D
Probab=100.00 E-value=1.5e-85 Score=512.40 Aligned_cols=123 Identities=59% Similarity=1.037 Sum_probs=119.9
Q ss_pred CChhhhhhhhcccc--ccccCCcccccccChhHHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHHhhhccCccccccCcc
Q psy7171 11 DDHLAIACWLFPVP--LRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKP 88 (146)
Q Consensus 11 ~d~~~~v~WlR~VD--LLLQGWQD~~FI~PANvVFvYmL~rd~v~~~~i~se~eLqa~vLTCLYLsYSYmGNEISYPLKP 88 (146)
-++.++|||+|+|| ||||||||||||||||||||||||||+|+++ ++||+||||+||||||||||||||||||||||
T Consensus 25 ~~p~~~V~WlR~VDRsLLlQGWQD~~Fi~PanvVFvYmL~r~~v~~~-~~se~eLqa~~lTCLYlsYSYmGNEISYPLKP 103 (149)
T 3o0g_D 25 LSPTDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYMGNEISYPLKP 103 (149)
T ss_dssp CCTHHHHHHHHHHHHHHHHHTSCSSCSCCHHHHHHHHHHHHHHSCTT-CCSHHHHHHHHHHHHHHHHHHHCSSSCCCSGG
T ss_pred CCcchhhhhHHhhhHHHHHccchhcccccchHHHHHHHHHHHHcccc-cCCHHHHHHHHHHHHHHHHHHhcccccccCcc
Confidence 36789999999999 9999999999999999999999999999865 79999999999999999999999999999999
Q ss_pred cccccchhHhhhHHHHHHhhccccchhccCCcchhHHHHHHHHhcC
Q psy7171 89 FLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACG 134 (146)
Q Consensus 89 FLve~~ke~FW~rcl~Ii~~~S~~MLriNadp~fFTevF~eLK~~~ 134 (146)
||||++||+|||||++|||++|+||||||+|||||||||+|||+||
T Consensus 104 Flv~~~k~~FW~rcl~iin~~S~~ML~iN~dp~~Ftevf~eLK~~~ 149 (149)
T 3o0g_D 104 FLVESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLKNES 149 (149)
T ss_dssp GCCCSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTTC
T ss_pred hhhcccHHHHHHHHHHHHHhhchhhheecCCccHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999986
No 2
>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegen diseases; HET: RRC; 2.2A {Homo sapiens} SCOP: a.74.1.1 PDB: 1unh_D* 1ung_D*
Probab=100.00 E-value=1.3e-82 Score=515.03 Aligned_cols=128 Identities=56% Similarity=0.992 Sum_probs=120.4
Q ss_pred CChhhhhhhhcccc--ccccCCcccccccChhHHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHHhhhccCccccccCcc
Q psy7171 11 DDHLAIACWLFPVP--LRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKP 88 (146)
Q Consensus 11 ~d~~~~v~WlR~VD--LLLQGWQD~~FI~PANvVFvYmL~rd~v~~~~i~se~eLqa~vLTCLYLsYSYmGNEISYPLKP 88 (146)
-+..++|||||+|| ||||||||||||||||||||||||||+|++| ++||+||||+||||||||||||||||||||||
T Consensus 70 ~~p~d~VmWLR~VDRsLLLQGWQD~aFI~PaNvVFvYmL~R~~v~~~-~~te~eLqa~vLTCLYlsYSYmGNEISYPLKP 148 (208)
T 1unl_D 70 LSPTDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYMGNEISYPLKP 148 (208)
T ss_dssp CCTHHHHHHHHHHHHHHHHTTSCSSCSCCHHHHHHHHHHHHHHSCTT-CCCHHHHHHHHHHHHHHHHHHHCSSSCCCSGG
T ss_pred CCccceehhHHhhhHHHHHccccccccccchhhhhHHHHHHHHcccc-cCCHHHHHHHHHHHHHHHHHhhCccccccCcc
Confidence 47889999999999 9999999999999999999999999999765 79999999999999999999999999999999
Q ss_pred cccccchhHhhhHHHHHHhhccccchhccCCcchhHHHHHHHHhcCCCCCC
Q psy7171 89 FLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTSTPS 139 (146)
Q Consensus 89 FLve~~ke~FW~rcl~Ii~~~S~~MLriNadp~fFTevF~eLK~~~~~~~~ 139 (146)
||||++||+|||||+.|||++|+||||||+|||||||||+|||+|+..+.+
T Consensus 149 Flve~~ke~FWdRCl~ii~~~S~kML~iN~~p~~Ftevf~eLK~~~~~~~~ 199 (208)
T 1unl_D 149 FLVESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLKNESGQEDK 199 (208)
T ss_dssp GCCSSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTTC-----
T ss_pred eeecCCHHHHHHHHHHHHHhhchhhheecCCccHHHHHHHHHHhcccccch
Confidence 999999999999999999999999999999999999999999999987543
No 3
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=39.21 E-value=33 Score=26.22 Aligned_cols=58 Identities=14% Similarity=0.240 Sum_probs=33.7
Q ss_pred hhhhhhhccccccccCCcccccccChhHHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHHhhhccC
Q psy7171 14 LAIACWLFPVPLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMG 79 (146)
Q Consensus 14 ~~~v~WlR~VDLLLQGWQD~~FI~PANvVFvYmL~rd~v~~~~i~se~eLqa~vLTCLYLsYSYmG 79 (146)
..++.|++.|--.++ +.|..+...--++...+.... -....+|.+-.||||+|--|-+
T Consensus 58 ~~lv~wl~~v~~~~~-------l~~~tl~lAv~~lDRfls~~~-v~~~~lqlv~~acL~iAsK~EE 115 (271)
T 2w96_A 58 KIVATWMLEVCEEQK-------CEEEVFPLAMNYLDRFLSLEP-VKKSRLQLLGATCMFVASKMKE 115 (271)
T ss_dssp HHHHHHHHHHHHHTT-------CCTTHHHHHHHHHHHHHTTSC-CCTTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHC-------CchhHHHHHHHHHHHhCCcCC-cCHHHHHHHHHHHHHHHHHHhh
Confidence 356677776651111 123444333334444444333 2445799999999999998854
No 4
>1f8v_D Mature capsid protein gamma; nodavirus, coat protein, nucleoprotein, protein-RNA interactions, RNA duplex, RNA CAGE, gamma polypeptide; 3.00A {Pariacato virus} SCOP: b.121.4.4
Probab=38.54 E-value=16 Score=23.19 Aligned_cols=15 Identities=40% Similarity=1.004 Sum_probs=12.6
Q ss_pred HhhhHHHHHHhhccc
Q psy7171 97 KFWDRCLHIVNNMSS 111 (146)
Q Consensus 97 ~FW~rcl~Ii~~~S~ 111 (146)
.||+|..+|++.-++
T Consensus 2 ~mWErVk~ilks~l~ 16 (40)
T 1f8v_D 2 KFWEGVLRVLNQISG 16 (40)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHHHH
Confidence 699999999987654
No 5
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=33.83 E-value=43 Score=25.73 Aligned_cols=88 Identities=16% Similarity=0.394 Sum_probs=47.3
Q ss_pred hhhhhhccccccccCCcccccccChhHHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHHhhhccCcccccc--Ccccccc
Q psy7171 15 AIACWLFPVPLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYP--LKPFLVE 92 (146)
Q Consensus 15 ~~v~WlR~VDLLLQGWQD~~FI~PANvVFvYmL~rd~v~~~~i~se~eLqa~vLTCLYLsYSYmGNEISYP--LKPFLve 92 (146)
.++.|++.|--.++ +.|..+.-.--++...+.... -....+|.+..||||+|--| +|+ +| ++-|..-
T Consensus 40 ~lv~wl~~v~~~~~-------l~~~tl~lAv~~lDRfl~~~~-v~~~~lqlv~~acL~iA~K~--eE~-~~p~~~d~~~~ 108 (269)
T 2b9r_A 40 ILIDWLVQVQMKFR-------LLQETMYMTVSIIDRFMQNNS-VPKKMLQLVGVTAMFIASKY--EEM-YPPEIGDFAFV 108 (269)
T ss_dssp HHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHHTTSC-CCGGGHHHHHHHHHHHHHHH--HCS-SCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHhcCCC-CcHHHhhHHHHHHHHHHHhc--ccc-cCccHHHHHHH
Confidence 45667766652111 123333223333444444333 35678999999999999888 344 33 3333321
Q ss_pred ----cchhHhhhHHHHHHhhccccc
Q psy7171 93 ----DCKEKFWDRCLHIVNNMSSSM 113 (146)
Q Consensus 93 ----~~ke~FW~rcl~Ii~~~S~~M 113 (146)
-+++.+.+-=..|++.+.-++
T Consensus 109 ~~~~~~~~eI~~mE~~IL~~L~f~l 133 (269)
T 2b9r_A 109 TDNTYTKHQIRQMEMKILRALNFGL 133 (269)
T ss_dssp TCSSSCHHHHHHHHHHHHHHTTSCC
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCcc
Confidence 145556555556666655443
No 6
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=29.32 E-value=49 Score=24.40 Aligned_cols=37 Identities=24% Similarity=0.454 Sum_probs=27.5
Q ss_pred HHHHHHHhhhcCCcCCCHHHHHHHHHHHHHHhhhccCccccccCcccccc
Q psy7171 43 FVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVE 92 (146)
Q Consensus 43 FvYmL~rd~v~~~~i~se~eLqa~vLTCLYLsYSYmGNEISYPLKPFLve 92 (146)
=|=-|+++++++. -+.+|.+.-+.. |+..|++||||-
T Consensus 30 ~Vr~LVq~Ll~~~--i~~EeFt~~Lq~-----------~lns~pqP~lvP 66 (105)
T 2h7b_A 30 RVRTLVLGLVNST--LTIEEFHSKLQE-----------ATNFPLRPFVIP 66 (105)
T ss_dssp HHHHHHHHHHTSS--CCHHHHHHHHHH-----------HSSSSCCSSSHH
T ss_pred HHHHHHHHHHhCC--CCHHHHHHHHHH-----------HhcCCCCcchhH
Confidence 3556788888765 377777776654 678999999984
No 7
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=27.56 E-value=15 Score=26.91 Aligned_cols=46 Identities=30% Similarity=0.420 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHH--HHhhhccCccccccCcccccccchhHhhhHHHHHHhhccc
Q psy7171 59 SESQLQAVVLTCL--YLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSS 111 (146)
Q Consensus 59 se~eLqa~vLTCL--YLsYSYmGNEISYPLKPFLve~~ke~FW~rcl~Ii~~~S~ 111 (146)
.-+|||.-+-+.. =|..-||.||++-|||-= +. -||.+.++++-|.
T Consensus 25 kf~dl~qkv~~afGq~ldl~y~nnEL~iPL~~Q------~D-LDkAvelLDrs~~ 72 (94)
T 2jrh_A 25 KYEDVEHKVTTVFGQPLDLHYMNNELSILLKNQ------DD-LDKAIDILDRSSS 72 (94)
T ss_dssp CHHHHHHHHHHHHCSSEEEEEECSSCEEECCSH------HH-HHHHHHHHHHSTT
T ss_pred cHHHHHHHHHHHhCCeeeeEEecceeEEeccCH------HH-HHHHHHHhccCcc
Confidence 3467777766653 245569999999999842 11 3667777666543
No 8
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=25.82 E-value=23 Score=22.84 Aligned_cols=15 Identities=27% Similarity=0.647 Sum_probs=12.5
Q ss_pred HhhhHHHHHHhhccc
Q psy7171 97 KFWDRCLHIVNNMSS 111 (146)
Q Consensus 97 ~FW~rcl~Ii~~~S~ 111 (146)
.||+|..+|++.-++
T Consensus 2 ~mWErVk~ilks~l~ 16 (44)
T 1nov_D 2 TFWERVRSILKSGLN 16 (44)
T ss_pred cHHHHHHHHHHHHHH
Confidence 699999999987554
No 9
>3pg6_A E3 ubiquitin-protein ligase DTX3L; DNA-damage, metal-binding, nucleus, phosphorylation, chromatin regulator, UBL conjugation pathway, zinc-finger; HET: CIT; 1.70A {Homo sapiens}
Probab=25.53 E-value=34 Score=26.82 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=16.8
Q ss_pred ccCCcchhHHHHHHHHhcCC
Q psy7171 116 INAEPGFFTEIFTELKACGT 135 (146)
Q Consensus 116 iNadp~fFTevF~eLK~~~~ 135 (146)
-=-||.|+++|-+||++.|-
T Consensus 139 GYPDp~YL~rV~~EL~akGI 158 (159)
T 3pg6_A 139 GYPDPSYLKRVKEELKAKGI 158 (159)
T ss_dssp CSCCTTHHHHHHHHHHHTTC
T ss_pred CCCCcHHHHHHHHHHHHhCC
Confidence 34589999999999998763
No 10
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=25.49 E-value=42 Score=25.39 Aligned_cols=26 Identities=42% Similarity=0.526 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhhhccCccccccCcc
Q psy7171 63 LQAVVLTCLYLSYSYMGNEISYPLKP 88 (146)
Q Consensus 63 Lqa~vLTCLYLsYSYmGNEISYPLKP 88 (146)
|-..+|-.|-=-|+-.|.|||-|=||
T Consensus 101 lweeflevlkeyytlsgteislpekp 126 (135)
T 3dt5_A 101 LWEEFLEVLKEYYTLSGTEISLPEKP 126 (135)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred HHHHHHHHHHHHhcccCcEecCCCCC
Confidence 44556777767788899999999999
No 11
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=25.39 E-value=49 Score=25.75 Aligned_cols=66 Identities=18% Similarity=0.327 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHHhhhccCcccccc--Cccccc-cc---chhHhhhHHHHHHhhccccchhccCCcchhHHHHHH
Q psy7171 59 SESQLQAVVLTCLYLSYSYMGNEISYP--LKPFLV-ED---CKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTE 129 (146)
Q Consensus 59 se~eLqa~vLTCLYLsYSYmGNEISYP--LKPFLv-e~---~ke~FW~rcl~Ii~~~S~~MLriNadp~fFTevF~e 129 (146)
....+|.+-.||||+|--|- |+ +| ++-|.. .+ .++.+.+-=..|++.+.=++-. ..|+-|-+.|..
T Consensus 89 ~~~~lqlv~~acL~iA~K~e--E~-~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~~~l~~--~tp~~fL~~f~~ 160 (283)
T 1w98_B 89 VKTLLQLIGISSLFIAAKLE--EI-YPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSP--LTIVSWLNVYMQ 160 (283)
T ss_dssp CGGGHHHHHHHHHHHHHHHH--CS-SCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCCC--CCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhc--cc-CCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCCC--CCHHHHHHHHHH
Confidence 45789999999999998874 44 33 333331 11 3566666566666666654422 345555555544
No 12
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=25.29 E-value=24 Score=22.71 Aligned_cols=15 Identities=20% Similarity=0.609 Sum_probs=12.5
Q ss_pred HhhhHHHHHHhhccc
Q psy7171 97 KFWDRCLHIVNNMSS 111 (146)
Q Consensus 97 ~FW~rcl~Ii~~~S~ 111 (146)
.||+|..+|++.-++
T Consensus 2 ~~WErVk~ilks~l~ 16 (44)
T 2z2q_B 2 SMWERVKSIIKSSLA 16 (44)
T ss_pred cHHHHHHHHHHHHHH
Confidence 699999999987654
No 13
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=24.11 E-value=6.1 Score=31.28 Aligned_cols=57 Identities=21% Similarity=0.240 Sum_probs=39.5
Q ss_pred cccChhHHHHHHH-----HH---hhhcCCcCC---CHHHHHHHHHHHHHHhhhcc----CccccccCccccc
Q psy7171 35 FINPANVVFVYML-----VR---ELVDGDKID---SESQLQAVVLTCLYLSYSYM----GNEISYPLKPFLV 91 (146)
Q Consensus 35 FI~PANvVFvYmL-----~r---d~v~~~~i~---se~eLqa~vLTCLYLsYSYm----GNEISYPLKPFLv 91 (146)
|+.|+|+||-=.+ -| +.+...+.+ =..+.+|.+++||-=-|||+ |++=.|-..||+-
T Consensus 104 ~L~P~NL~f~~~~~p~i~~RGik~~l~P~~~~ee~fL~qyKAliiall~~K~~Fe~l~~G~lel~k~~~f~~ 175 (215)
T 4ann_A 104 VLAPDELFFTRDGLPIAKTRGLQNVVDPLPVSEAEFLTRYKALVICAFNEKQSFDALVEGNLELHKGTPFET 175 (215)
T ss_dssp CCSGGGEEECTTSCEEESCCEETTTBSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHSCGGGCCCCHHHH
T ss_pred EEecceEEEcCCCCEEEEEccCccCCCCCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHcChHhhccCCHHHH
Confidence 7899999996544 34 446555422 23577999999998888875 5655566777763
No 14
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=24.04 E-value=1e+02 Score=22.68 Aligned_cols=46 Identities=20% Similarity=0.406 Sum_probs=28.9
Q ss_pred ccccccchhHhhhHHHHHHhh----------------ccccchhccCCcc--hhHHHHHHHHhcCCC
Q psy7171 88 PFLVEDCKEKFWDRCLHIVNN----------------MSSSMLRINAEPG--FFTEIFTELKACGTS 136 (146)
Q Consensus 88 PFLve~~ke~FW~rcl~Ii~~----------------~S~~MLriNadp~--fFTevF~eLK~~~~~ 136 (146)
+|..+=.+.+|-++.++++.. -+. .. -.+|. ++.++|.+||+.|-.
T Consensus 86 ~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~-~f--~~~~~l~~i~~~Y~~Lk~~G~~ 149 (163)
T 1x5b_A 86 IFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE-EF--QKDPQFSLISATIKSMKEEGIT 149 (163)
T ss_dssp HHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HT--TTCSTTHHHHHHHHHHHTTTCC
T ss_pred HHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH-Hh--cCCcccHHHHHHHHHHHHcCCC
Confidence 455555556666666666553 222 22 24555 489999999999875
No 15
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=23.61 E-value=67 Score=23.33 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=27.6
Q ss_pred hhhHHHHHHhhccccchhccCCcchhHHHHHHHHhcCCCCCCCCCC
Q psy7171 98 FWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTSTPSTGLA 143 (146)
Q Consensus 98 FW~rcl~Ii~~~S~~MLriNadp~fFTevF~eLK~~~~~~~~~~~~ 143 (146)
--++|+.+|..-+.. .-.+|. +.+++.+||++|-.-+....|
T Consensus 103 Vk~kil~li~~W~~~---f~~~p~-i~~~y~~Lk~~G~~Fp~~~~~ 144 (148)
T 1mhq_A 103 VKGRVIEILFSWTVW---FPEDIK-IRDAYQMLKKQGIIKQDPKLP 144 (148)
T ss_dssp HHHHHHHHHHHHHHH---CTTCHH-HHHHHHHHHHTTSSCSCCCC-
T ss_pred HHHHHHHHHHHHHHH---cCCCch-HHHHHHHHHHcCCCCCCCCCC
Confidence 344566666655543 235777 899999999999865554444
No 16
>2ou6_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.80A {Deinococcus radiodurans} SCOP: a.213.1.2
Probab=22.24 E-value=58 Score=22.65 Aligned_cols=39 Identities=23% Similarity=0.114 Sum_probs=25.0
Q ss_pred cc--ccCccc-----------ccccchhHhhhHHHHHHhhccccchhccCCcc
Q psy7171 82 IS--YPLKPF-----------LVEDCKEKFWDRCLHIVNNMSSSMLRINAEPG 121 (146)
Q Consensus 82 IS--YPLKPF-----------Lve~~ke~FW~rcl~Ii~~~S~~MLriNadp~ 121 (146)
|+ ||+.|| |++. -+.-.++-...+..+|.+-++--..|.
T Consensus 16 ~~~~~~ig~~~~~~~~~~~~~l~~~-l~~~~~~l~~~l~~L~eeql~~~~~~~ 67 (190)
T 2ou6_A 16 SERAYFVQPDADPAFTPHIGALVEM-LTYARLTTLQAVEGLPEDQLWATAPGF 67 (190)
T ss_dssp SGGGGCCCTTSCTTSCHHHHHHHHH-HHHHHHHHHHHHTTCCGGGTTCCBTTB
T ss_pred cccceeeeeccccCCCHHHHHHHHH-HHHHHHHHHHHHcCCCHHHHhcCCCCC
Confidence 56 999999 2221 122345567788888888877655443
No 17
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=20.93 E-value=20 Score=20.98 Aligned_cols=15 Identities=47% Similarity=1.108 Sum_probs=10.6
Q ss_pred cccccc---cchhHhhhH
Q psy7171 87 KPFLVE---DCKEKFWDR 101 (146)
Q Consensus 87 KPFLve---~~ke~FW~r 101 (146)
+|||.. +..+.||+.
T Consensus 4 rpfllrnpndkyepfwed 21 (27)
T 1nro_R 4 RPFLLRNPNDKYEPFWED 21 (27)
T ss_pred ccccccCCCcccCccccc
Confidence 799984 356778863
No 18
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=20.48 E-value=1.1e+02 Score=22.15 Aligned_cols=64 Identities=19% Similarity=0.227 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhhhccCccccccCccccc--ccchhHhhhHHHHHHhhccccchhccCCcchhHHHH
Q psy7171 60 ESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV--EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIF 127 (146)
Q Consensus 60 e~eLqa~vLTCLYLsYSYmGNEISYPLKPFLv--e~~ke~FW~rcl~Ii~~~S~~MLriNadp~fFTevF 127 (146)
.+..+.+..+|||+|--+-+. .-.+|=|.- .-++..++..=..|+..+.-++ ...+|+-|-.-|
T Consensus 44 ~~~~~~v~aaclylAcK~ee~--p~~l~di~~~~~~~~~~i~~~~~~ll~~L~~~l--~~~~p~~~l~r~ 109 (207)
T 1c9b_A 44 GRANDAIASACLYIACRQEGV--PRTFKEICAVSRISKKEIGRCFKLILKALETSV--DLITTGDFMSRF 109 (207)
T ss_dssp TSCHHHHHHHHHHHHHHHTTC--CCCHHHHHHTSSSCHHHHHHHHHHHHHHTTCCC--CCCCTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCc--CcCCHHHHHHHH
Confidence 345899999999999988553 223333221 2355666654445555555433 224555444333
No 19
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=20.48 E-value=54 Score=24.05 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=20.6
Q ss_pred hHHHHHHhhccccchhccCCcchhHHHHHHHHhcCC
Q psy7171 100 DRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGT 135 (146)
Q Consensus 100 ~rcl~Ii~~~S~~MLriNadp~fFTevF~eLK~~~~ 135 (146)
++++.+|..-+.. .-.+|. |.++|.+||++|-
T Consensus 115 ~kil~li~~W~~~---f~~~p~-i~~~Y~~Lk~~Gi 146 (149)
T 3g2s_A 115 NKILELLYSWTVG---LPEEVK-IAEAYQMLKKQGI 146 (149)
T ss_dssp HHHHHHHHHHHHH---CTTCHH-HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH---hCCCch-HHHHHHHHHHCcC
Confidence 3444444443332 245777 8999999999885
No 20
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=20.32 E-value=21 Score=26.33 Aligned_cols=45 Identities=16% Similarity=0.328 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHH--HhhhccCccccccCcccccccchhHhhhHHHHHHhhcc
Q psy7171 59 SESQLQAVVLTCLY--LSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMS 110 (146)
Q Consensus 59 se~eLqa~vLTCLY--LsYSYmGNEISYPLKPFLve~~ke~FW~rcl~Ii~~~S 110 (146)
.-+|||.-+-+..= |..-||.||++-|||-= +. -||.+.++++-|
T Consensus 41 ~f~el~~kv~~afGq~ldl~y~nnEL~iPL~~Q------~D-LDkAvelLDrs~ 87 (100)
T 2npt_B 41 KLEDLRSKAKIAFGQSMDLHYTNNELVIPLTTQ------DD-LDKAVELLDRSI 87 (100)
T ss_dssp CHHHHHHHHHHHHTSCEEEEEEETTEEEECCCH------HH-HHHHHHHHHHCS
T ss_pred cHHHHHHHHHHHhCCeeeeEEecceeEEecccH------HH-HHHHHHHhccCc
Confidence 34677776665532 45569999999999832 11 356666666654
Done!