RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7171
         (146 letters)



>gnl|CDD|217461 pfam03261, CDK5_activator, Cyclin-dependent kinase 5 activator
           protein. 
          Length = 314

 Score =  202 bits (516), Expect = 5e-66
 Identities = 77/120 (64%), Positives = 95/120 (79%), Gaps = 3/120 (2%)

Query: 19  WLFPV--PLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYS 76
           WL  V   L L    D AFI PANVVFVY+L R+++ G+ + +E +LQA +LTCLYLSYS
Sbjct: 195 WLRSVDRSLLLQGWQDQAFITPANVVFVYLLCRDVLSGE-VATEHELQAWLLTCLYLSYS 253

Query: 77  YMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTS 136
           YMGNEISYPLKPFLVE+ KE FWDRCL I+N++SS MLRINA+P FFT++FT+LK  G+S
Sbjct: 254 YMGNEISYPLKPFLVENDKEAFWDRCLAIINSLSSKMLRINADPHFFTQVFTDLKNEGSS 313


>gnl|CDD|217355 pfam03074, GCS, Glutamate-cysteine ligase.  This family represents
           the catalytic subunit of glutamate-cysteine ligase (E.C.
           6.3.2.2), also known as gamma-glutamylcysteine
           synthetase (GCS). This enzyme catalyzes the rate
           limiting step in the biosynthesis of glutathione. The
           eukaryotic enzyme is a dimer of a heavy chain and a
           light chain with all the catalytic activity exhibited by
           the heavy chain (this family).
          Length = 365

 Score = 27.0 bits (60), Expect = 4.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 23  VPLRLSEINDVAFINPANVVFVYMLVRELV 52
           V  R  E+    F N A  VFV +L R ++
Sbjct: 192 VEFRPMEVQLTDFENAAYSVFVVLLTRAIL 221


>gnl|CDD|219347 pfam07247, AATase, Alcohol acetyltransferase.  This family contains
           a number of alcohol acetyltransferase (EC:2.3.1.84)
           enzymes approximately 500 residues long found in both
           bacteria and metazoa. These catalyze the esterification
           of isoamyl alcohol by acetyl coenzyme A.
          Length = 479

 Score = 26.6 bits (59), Expect = 5.0
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 74  SYSYM----GNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSM 113
           S+ Y     G     P+ PF +++ KE FWD   +    +S ++
Sbjct: 323 SFKYGTNVGGVHFIPPISPFSIQESKEDFWDLVEYYHQRLSKAI 366


>gnl|CDD|176916 cd08907, START_STARD8-like, C-terminal lipid-binding START domain
           of mammalian STARD8 and related proteins, which also
           have an N-terminal Rho GTPase-activating protein
           (RhoGAP) domain.  This subgroup includes the
           steroidogenic acute regulatory protein (StAR)-related
           lipid transfer (START) domains of STARD8 (also known as
           deleted in liver cancer 3/DLC3, and Arhgap38) and
           related proteins. It belongs to the START domain family,
           and in turn to the SRPBCC
           (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain
           superfamily of proteins that bind hydrophobic ligands.
           SRPBCC domains have a deep hydrophobic ligand-binding
           pocket. Proteins belonging to this subfamily also have a
           RhoGAP domain. The precise function of the START domain
           in this subgroup is unclear.
          Length = 205

 Score = 26.4 bits (58), Expect = 5.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 46  MLVRELVDGDKIDSESQLQAVVLTCLYL 73
           +LV + VD D    E+ ++AV+LT  YL
Sbjct: 129 LLVSQSVDHDNPQLEAGVRAVLLTSQYL 156


>gnl|CDD|226850 COG4427, COG4427, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 350

 Score = 26.4 bits (58), Expect = 7.2
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query: 14  LAIACWLFPVPLRLSEINDVAFIN 37
           L I    F  PL LSEI   A +N
Sbjct: 131 LLIVALQFGKPLVLSEIGSSAGLN 154


>gnl|CDD|182975 PRK11118, PRK11118, putative monooxygenase; Provisional.
          Length = 100

 Score = 25.3 bits (56), Expect = 8.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)

Query: 116 INAEPGFFTEIFTE 129
           IN EPGF  +I+TE
Sbjct: 30  INEEPGFIWKIWTE 43


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0721    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,403,453
Number of extensions: 644944
Number of successful extensions: 462
Number of sequences better than 10.0: 1
Number of HSP's gapped: 461
Number of HSP's successfully gapped: 12
Length of query: 146
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 58
Effective length of database: 7,034,450
Effective search space: 407998100
Effective search space used: 407998100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.6 bits)