RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7171
         (146 letters)



>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue,
           neurodegen diseases; HET: RRC; 2.2A {Homo sapiens} SCOP:
           a.74.1.1 PDB: 1unh_D* 1ung_D*
          Length = 208

 Score =  184 bits (469), Expect = 1e-60
 Identities = 74/140 (52%), Positives = 94/140 (67%), Gaps = 12/140 (8%)

Query: 4   VVGLRMGDDHLAIACWLFPVPLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQL 63
           V+ LR  D  L +  W            D  FI PANVVF+YML R+++  + + S+ +L
Sbjct: 76  VLWLRSVDRSLLLQGW-----------QDQGFITPANVVFLYMLCRDVISSE-VGSDHEL 123

Query: 64  QAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFF 123
           QAV+LTCLYLSYSYMGNEISYPLKPFLVE CKE FWDRCL ++N MSS ML+INA+P +F
Sbjct: 124 QAVLLTCLYLSYSYMGNEISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQINADPHYF 183

Query: 124 TEIFTELKACGTSTPSTGLA 143
           T++F++LK          L 
Sbjct: 184 TQVFSDLKNESGQEDKKRLL 203


>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex,
           kinase inhibitor complex, transferase-transferase
           activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB:
           1h4l_D
          Length = 149

 Score =  179 bits (455), Expect = 3e-59
 Identities = 73/130 (56%), Positives = 93/130 (71%), Gaps = 12/130 (9%)

Query: 4   VVGLRMGDDHLAIACWLFPVPLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQL 63
           V+ LR  D  L +  W            D  FI PANVVF+YML R+++  + + S+ +L
Sbjct: 31  VLWLRSVDRSLLLQGW-----------QDQGFITPANVVFLYMLCRDVISSE-VGSDHEL 78

Query: 64  QAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFF 123
           QAV+LTCLYLSYSYMGNEISYPLKPFLVE CKE FWDRCL ++N MSS ML+INA+P +F
Sbjct: 79  QAVLLTCLYLSYSYMGNEISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQINADPHYF 138

Query: 124 TEIFTELKAC 133
           T++F++LK  
Sbjct: 139 TQVFSDLKNE 148


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 53/152 (34%)

Query: 1   MLGVVGLRMG--DDHLAIACWLFPVPLRLSEINDVAFIN-PANVVFV-------YMLVRE 50
           ML +  L      D++       P   ++     ++ +N   N+V V       Y L   
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVE----ISLVNGAKNLV-VSGPPQSLYGLNLT 392

Query: 51  L--------VDGDKIDSESQLQAVVLTCLYL-------SYSYMGNEISYPLKPFLVEDCK 95
           L        +D  +I   S+ + +  +  +L       S   +      P    + +D  
Sbjct: 393 LRKAKAPSGLDQSRIPF-SE-RKLKFSNRFLPVASPFHS-HLLV-----PASDLINKDLV 444

Query: 96  EK--FWDRCLHIVNNMSSSMLRINAEPGFFTE 125
           +    ++          +  ++I   P + T 
Sbjct: 445 KNNVSFN----------AKDIQI---PVYDTF 463


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl RED
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 1688

 Score = 29.1 bits (65), Expect = 0.63
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 19/59 (32%)

Query: 88   PFLVEDCKEKFWDRCLHIVNNMSS--SMLRINAE-PGFFTEIFTELKACGTSTPSTGLA 143
              L E             +N MS+  +ML I++  P     I T + AC TS  S  + 
Sbjct: 1074 DILQE-----------SFINTMSAWVNMLLISSSGP-----IKTPVGACATSVESVDIG 1116


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 25.6 bits (55), Expect = 9.9
 Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 23/104 (22%)

Query: 36  INPANVVFVY-M-------LVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLK 87
           + PA  V +  +       +  ++    K+  +   +       +L+   + N  S    
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-----FWLN---LKNCNS---- 194

Query: 88  PFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELK 131
               E   E        I  N +S     +        I  EL+
Sbjct: 195 ---PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,210,190
Number of extensions: 118224
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 11
Length of query: 146
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 61
Effective length of database: 4,328,508
Effective search space: 264038988
Effective search space used: 264038988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.5 bits)