RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7171
         (146 letters)



>d1unld_ a.74.1.1 (D:) CDK5 activator 1 (NCK5a, p25) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 150

 Score =  190 bits (483), Expect = 8e-64
 Identities = 72/118 (61%), Positives = 90/118 (76%), Gaps = 3/118 (2%)

Query: 19  WLFPV--PLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYS 76
           WL  V   L L    D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYS
Sbjct: 33  WLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYS 91

Query: 77  YMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACG 134
           YMGNEISYPLKPFLVE CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK   
Sbjct: 92  YMGNEISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLKNES 149


>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation
          specificity factor subunit 3 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 451

 Score = 24.4 bits (51), Expect = 6.7
 Identities = 6/38 (15%), Positives = 15/38 (39%)

Query: 7  LRMGDDHLAIACWLFPVPLRLSEINDVAFINPANVVFV 44
          L      + + C + P    +  +  +  I+PA +  +
Sbjct: 22 LEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLL 59


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0383    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 537,997
Number of extensions: 22732
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 2
Length of query: 146
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,350,386
Effective search space: 93176634
Effective search space used: 93176634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.6 bits)