BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7177
(66 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O75604|UBP2_HUMAN Ubiquitin carboxyl-terminal hydrolase 2 OS=Homo sapiens GN=USP2
PE=1 SV=2
Length = 605
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%)
Query: 11 AGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYK 53
GHYTAY P T EWH FND +V ++AY+LFY+
Sbjct: 555 GGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYE 597
>sp|Q5U349|UBP2_RAT Ubiquitin carboxyl-terminal hydrolase 2 OS=Rattus norvegicus
GN=Usp2 PE=1 SV=1
Length = 618
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%)
Query: 11 AGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYK 53
GHYTAY P T EWH FND +V ++AY+LFY+
Sbjct: 568 GGHYTAYCRSPVTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYE 610
>sp|O88623|UBP2_MOUSE Ubiquitin carboxyl-terminal hydrolase 2 OS=Mus musculus GN=Usp2
PE=1 SV=2
Length = 613
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%)
Query: 11 AGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYK 53
GHYTAY P T EWH FND +V ++AY+LFY+
Sbjct: 563 GGHYTAYCRSPVTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYE 605
>sp|P35125|UBP6_HUMAN Ubiquitin carboxyl-terminal hydrolase 6 OS=Homo sapiens GN=USP6 PE=1
SV=2
Length = 1406
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 9 VSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDED 58
+S GHY Y +PN K W+ +ND + E P + D ++AYILFY+++ D
Sbjct: 1324 LSGGHYITYAKNPNCK-WYCYNDSSCEELHPDEIDTDSAYILFYEQQGID 1372
>sp|Q91W36|UBP3_MOUSE Ubiquitin carboxyl-terminal hydrolase 3 OS=Mus musculus GN=Usp3
PE=2 SV=1
Length = 520
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 3 VRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDSDVE 62
V GV +GHYTAY +H W +FND TV + AYILFY +R + E
Sbjct: 461 VHHGSGVGSGHYTAYAVHEG--RWFHFNDSTVTVTDEETVGKAKAYILFYVERQARAGAE 518
>sp|Q8NFA0|UBP32_HUMAN Ubiquitin carboxyl-terminal hydrolase 32 OS=Homo sapiens GN=USP32
PE=1 SV=1
Length = 1604
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 9 VSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDED 58
+ GHY Y +PN K W+ +ND + E P + D ++AYILFY+++ D
Sbjct: 1522 LGGGHYVTYAKNPNCK-WYCYNDSSCKELHPDEIDTDSAYILFYEQQGID 1570
>sp|Q8BUM9|UBP43_MOUSE Ubiquitin carboxyl-terminal hydrolase 43 OS=Mus musculus GN=Usp43
PE=2 SV=2
Length = 1132
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 9 VSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRD 56
+ GHYTAY + +W+ ++D TV R + + AYILFY+KR+
Sbjct: 664 LQGGHYTAYCRNSLDGQWYSYDDSTVEALREDEVNTRGAYILFYQKRN 711
>sp|Q99K46|UBP11_MOUSE Ubiquitin carboxyl-terminal hydrolase 11 OS=Mus musculus GN=Usp11
PE=2 SV=4
Length = 921
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 8 GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRD 56
G+ GHYT + + ++ +WHYF+D +V + AY+LFY+++D
Sbjct: 842 GMRDGHYTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQRQD 890
>sp|Q70EL4|UBP43_HUMAN Ubiquitin carboxyl-terminal hydrolase 43 OS=Homo sapiens GN=USP43
PE=1 SV=2
Length = 1123
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 9 VSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRD 56
+ GHYTAY + +W+ ++D TV R + + AYILFY+KR+
Sbjct: 664 LQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNTRGAYILFYQKRN 711
>sp|P51784|UBP11_HUMAN Ubiquitin carboxyl-terminal hydrolase 11 OS=Homo sapiens GN=USP11
PE=1 SV=3
Length = 963
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 8 GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRD 56
G+ GHYT + + ++ +WHYF+D +V + AY+LFY+++D
Sbjct: 883 GMRDGHYTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQRQD 931
>sp|O57429|UBP2_CHICK Ubiquitin carboxyl-terminal hydrolase 2 OS=Gallus gallus GN=USP2
PE=2 SV=1
Length = 357
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 11 AGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYK 53
GHYTAY P + EWH FND V ++AY+LFY+
Sbjct: 307 GGHYTAYCKSPISSEWHSFNDSRVTPMSSSHVRSSDAYLLFYE 349
>sp|P39538|UBP12_YEAST Ubiquitin carboxyl-terminal hydrolase 12 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UBP12 PE=1 SV=1
Length = 1254
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 13 HYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDSD 60
HYTAY + +W+YF+D V E P++ +AY+LFY +R +D +
Sbjct: 1068 HYTAYVKNFADNKWYYFDDSRVTETAPENSIAGSAYLLFYIRRHKDGN 1115
>sp|Q2KHV7|UBP2_BOVIN Ubiquitin carboxyl-terminal hydrolase 2 OS=Bos taurus GN=USP2 PE=2
SV=1
Length = 606
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%)
Query: 11 AGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYK 53
GHYTAY P T EWH FND +V ++AY+LFY+
Sbjct: 556 GGHYTAYCRSPVTGEWHTFNDSSVSPMSSSQVRTSDAYLLFYE 598
>sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus GN=Usp4
PE=1 SV=3
Length = 962
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 8 GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDED 58
+ GHYTAY + +W+YF+D +V AY+LFY++RD++
Sbjct: 875 AMGVGHYTAYAKNRLNGKWYYFDDSSVSLASEDQIVTKAAYVLFYQRRDDE 925
>sp|B2GUZ1|UBP4_RAT Ubiquitin carboxyl-terminal hydrolase 4 OS=Rattus norvegicus
GN=Usp4 PE=1 SV=1
Length = 961
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 8 GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDED 58
+ GHYTAY + +W+YF+D +V AY+LFY++RD++
Sbjct: 874 AMGVGHYTAYAKNRLNGKWYYFDDSSVSLASEDQIVTKAAYVLFYQRRDDE 924
>sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo abelii GN=USP4
PE=2 SV=1
Length = 963
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 8 GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDED 58
+ GHYTAY + +W+YF+D V AY+LFY++RD++
Sbjct: 876 AMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDE 926
>sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4
PE=1 SV=3
Length = 963
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 8 GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDED 58
+ GHYTAY + +W+YF+D V AY+LFY++RD++
Sbjct: 876 AMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDE 926
>sp|Q9Y6I4|UBP3_HUMAN Ubiquitin carboxyl-terminal hydrolase 3 OS=Homo sapiens GN=USP3
PE=1 SV=2
Length = 520
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 3 VRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFY 52
V GV +GHYTAY H W +FND TV + AYILFY
Sbjct: 461 VHHGSGVGSGHYTAYATHEG--RWFHFNDSTVTLTDEETVVKAKAYILFY 508
>sp|A6QR55|UBP4_BOVIN Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus GN=USP4 PE=2
SV=1
Length = 963
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 8 GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDED 58
+ GHYTAY + +W+YF+D V AY+LFY++RD++
Sbjct: 876 AMGVGHYTAYAKNKLNGKWYYFDDSNVSLACEDQIVTKAAYVLFYQRRDDE 926
>sp|A5PMR2|UBP33_DANRE Ubiquitin carboxyl-terminal hydrolase 33 OS=Danio rerio GN=usp33
PE=2 SV=1
Length = 897
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 9 VSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDSDVE 62
S+GHY AY + + W+ F+D++V E AY+LFYKK ++++ E
Sbjct: 624 ASSGHYIAYCRNELNQLWYEFDDQSVTEVSESCVQNAEAYVLFYKKSNDETQKE 677
>sp|Q9USM5|UBP1_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ubp1 PE=3 SV=1
Length = 849
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 9 VSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRD 56
+S GHYTAY +++ + F+D + E P+D ++AY+LFY+ ++
Sbjct: 802 MSNGHYTAYARDASSQTFFKFDDTAICEIDPEDIVTSSAYVLFYRAKN 849
>sp|Q8R5K2|UBP33_MOUSE Ubiquitin carboxyl-terminal hydrolase 33 OS=Mus musculus GN=Usp33
PE=1 SV=2
Length = 909
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 9 VSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDSDVE 62
S+GHY AY + W+ F+D++V E AY+LFY+K E++ E
Sbjct: 636 ASSGHYIAYCRNNLNNLWYEFDDQSVTEVSESTVQNAEAYVLFYRKSSEEAQKE 689
>sp|Q5REG5|UBP33_PONAB Ubiquitin carboxyl-terminal hydrolase 33 OS=Pongo abelii GN=USP33
PE=2 SV=1
Length = 914
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 9 VSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDSDVE 62
S+GHY AY + W+ F+D++V E AY+LFY+K E++ E
Sbjct: 637 ASSGHYIAYCRNNLNNLWYEFDDQSVTEVSESTVQNAEAYVLFYRKSSEEAQKE 690
>sp|Q8TEY7|UBP33_HUMAN Ubiquitin carboxyl-terminal hydrolase 33 OS=Homo sapiens GN=USP33
PE=1 SV=2
Length = 942
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 9 VSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDSDVE 62
S+GHY AY + W+ F+D++V E AY+LFY+K E++ E
Sbjct: 669 ASSGHYIAYCRNNLNNLWYEFDDQSVTEVSESTVQNAEAYVLFYRKSSEEAQKE 722
>sp|A6QNM7|UBP33_BOVIN Ubiquitin carboxyl-terminal hydrolase 33 OS=Bos taurus GN=USP33
PE=2 SV=1
Length = 912
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 9 VSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDSDVE 62
S+GHY AY + W+ F+D++V E AY+LFY+K E++ E
Sbjct: 639 ASSGHYIAYCRNNLNNLWYEFDDQSVTEVSESTVQNAEAYVLFYRKSSEEAQKE 692
>sp|Q28CN3|UBP33_XENTR Ubiquitin carboxyl-terminal hydrolase 33 OS=Xenopus tropicalis
GN=usp33 PE=2 SV=1
Length = 892
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 9 VSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDSDVE 62
S+GHY AY + W+ F+D++V E AY+LFY+K E++ E
Sbjct: 619 ASSGHYIAYCRNNLNNLWYEFDDQSVTEVSEATVQNAEAYVLFYRKASEEAQKE 672
>sp|Q5UQR3|UBPL1_MIMIV Probable ubiquitin carboxyl-terminal hydrolase R319 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R319 PE=3 SV=1
Length = 468
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 8 GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRD 56
G++ GHY Y+ NT EW+ FND + NAYILFY + D
Sbjct: 415 GLNNGHYFTYSKIENTGEWYEFNDTYTGKVTDNHIVNQNAYILFYIRSD 463
>sp|O96612|UBPB_DICDI Ubiquitin hydrolase B OS=Dictyostelium discoideum GN=ubpB PE=1 SV=1
Length = 451
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 7 KGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYK 53
+G+S GHYT P +W ++D T E + QD AY+L Y+
Sbjct: 402 RGLSQGHYTCDIYQPQQAQWIRYDDSTFTEVKEQDVLNREAYLLLYQ 448
>sp|B1WBD7|UBP20_XENLA Ubiquitin carboxyl-terminal hydrolase 20 OS=Xenopus laevis GN=usp20
PE=2 SV=1
Length = 840
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 9 VSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDSDVE 62
S+GHY +Y + +W+ F+D+ V E AY+LFY+K E+++ E
Sbjct: 565 ASSGHYISYCQNVINGQWYEFDDQYVTEVHETVVQNAEAYVLFYRKSSEEAERE 618
>sp|A0JM59|UBP20_XENTR Ubiquitin carboxyl-terminal hydrolase 20 OS=Xenopus tropicalis
GN=usp20 PE=2 SV=1
Length = 884
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 9 VSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDSDVE 62
S+GHY +Y + +W+ F+D+ V E AY+LFY+K E+++ E
Sbjct: 609 ASSGHYISYCQNVINGQWYEFDDQYVTEVHETVVQNAEAYVLFYRKSSEEAERE 662
>sp|A7TGY3|UBP4_VANPO Ubiquitin carboxyl-terminal hydrolase 4 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=DOA4 PE=3
SV=1
Length = 882
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 11 AGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFN-NAYILFYKK 54
GHYTAY + WHYF+D + + + E NAY+LFY +
Sbjct: 834 GGHYTAYVNKGINRGWHYFDDTSYRPIKNETECITPNAYVLFYHR 878
>sp|Q6P9L4|UBP49_MOUSE Ubiquitin carboxyl-terminal hydrolase 49 OS=Mus musculus GN=Usp49
PE=2 SV=1
Length = 685
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 7 KGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDSDVEVSGP 66
KG +GHYTAY + W + ND + ++ AYILFY +R ++S P
Sbjct: 606 KGFGSGHYTAYCYNTEGGFWVHCNDSKLDVCSVEEVCKTQAYILFYTRRTVQGSAKLSEP 665
>sp|A5PN09|UBP20_DANRE Ubiquitin carboxyl-terminal hydrolase 20 OS=Danio rerio GN=usp20
PE=2 SV=1
Length = 911
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 9 VSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDS 59
+GHY AY + +W+ F+D+ V E AY+LFY+K E+S
Sbjct: 639 AGSGHYIAYCQNVINGQWYEFDDQYVTEVHETVVQNAEAYVLFYRKSSEES 689
>sp|Q09738|UBP8_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 8
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ubp8 PE=3 SV=1
Length = 449
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 9 VSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKR 55
+ GHY AYT + N +W +D T++E + + + AY+LFY +R
Sbjct: 391 LDTGHYIAYTYYQN--QWFLLDDTTIVEVKESEVLNSQAYLLFYHER 435
>sp|Q53GS9|SNUT2_HUMAN U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sapiens GN=USP39
PE=1 SV=2
Length = 565
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 10 SAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDED 58
S G Y + LH T +W+ D V + PQ + AYI +K+RD D
Sbjct: 510 SEGSYRIHVLHHGTGKWYELQDLQVTDILPQMITLSEAYIQIWKRRDND 558
>sp|Q5R761|SNUT2_PONAB U4/U6.U5 tri-snRNP-associated protein 2 OS=Pongo abelii GN=USP39
PE=2 SV=1
Length = 565
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 10 SAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDED 58
S G Y + LH T +W+ D V + PQ + AYI +K+RD D
Sbjct: 510 SEGSYRIHVLHHGTGKWYELQDLQVTDILPQMITLSEAYIQIWKRRDND 558
>sp|Q3TIX9|SNUT2_MOUSE U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus musculus GN=Usp39
PE=2 SV=2
Length = 564
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 10 SAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDED 58
S G Y + LH T +W+ D V + PQ + AYI +K+RD D
Sbjct: 509 SEGSYRIHVLHHGTGKWYELQDLQVTDILPQMITLSEAYIQIWKRRDND 557
>sp|Q6NTR6|UP44A_XENLA Ubiquitin carboxyl-terminal hydrolase 44-A OS=Xenopus laevis
GN=usp44-a PE=2 SV=1
Length = 690
Score = 36.6 bits (83), Expect = 0.042, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 7 KGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKR 55
KG +GHYTA+ +P W + ND + ++ AYILFY +R
Sbjct: 619 KGFGSGHYTAFCYNPEGGFWVHCNDSKLHSCTVEEVCKAQAYILFYTQR 667
>sp|Q5XGZ2|UP44B_XENLA Ubiquitin carboxyl-terminal hydrolase 44-B OS=Xenopus laevis
GN=usp44-b PE=2 SV=1
Length = 690
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 7 KGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKR 55
KG +GHYTA+ +P W + ND + ++ AYILFY +R
Sbjct: 619 KGFGSGHYTAFCYNPEGGFWVHCNDSKLHSCAVEEVCKAQAYILFYTQR 667
>sp|A7Z056|UBP20_BOVIN Ubiquitin carboxyl-terminal hydrolase 20 OS=Bos taurus GN=USP20
PE=2 SV=1
Length = 912
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 9 VSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDS 59
+GHY AY + +W+ F+D+ V E AY+LFY+K E++
Sbjct: 637 AGSGHYIAYCQNVINGQWYEFDDQYVTEVHETVVQNAEAYVLFYRKSSEEA 687
>sp|Q70CQ1|UBP49_HUMAN Ubiquitin carboxyl-terminal hydrolase 49 OS=Homo sapiens GN=USP49
PE=2 SV=1
Length = 688
Score = 36.2 bits (82), Expect = 0.061, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 7 KGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDSDVEVS 64
KG +GHYTAY + W + ND + ++ AYILFY +R + +S
Sbjct: 609 KGFGSGHYTAYCYNTEGGFWVHCNDSKLNVCSVEEVCKTQAYILFYTQRTVQGNARIS 666
>sp|Q8C6M1|UBP20_MOUSE Ubiquitin carboxyl-terminal hydrolase 20 OS=Mus musculus GN=Usp20
PE=1 SV=1
Length = 916
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 11 AGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDS 59
+GHY AY + +W+ F+D+ V E AY+LFY+K E++
Sbjct: 643 SGHYIAYCQNVINGQWYEFDDQYVTEVHETVVQNVEAYVLFYRKSSEEA 691
>sp|O22207|UBP5_ARATH Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana
GN=UBP5 PE=1 SV=2
Length = 924
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 8 GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDE 57
G+ +GHYTA+ + W+ F+D + D AY+LFY+++ +
Sbjct: 869 GMGSGHYTAHIKLLDDSRWYNFDDSHISHINEDDVKSGAAYVLFYRRKSD 918
>sp|F6Z5C0|UBP15_XENTR Ubiquitin carboxyl-terminal hydrolase 15 OS=Xenopus tropicalis
GN=usp15 PE=2 SV=2
Length = 982
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 13 HYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRD 56
HYTA+ + + +W+YF+D +V + AY+LFY+++D
Sbjct: 891 HYTAFAKNKDDGKWYYFDDSSVSTASEEQIVSKAAYVLFYQRQD 934
>sp|Q8C2S0|UBP44_MOUSE Ubiquitin carboxyl-terminal hydrolase 44 OS=Mus musculus GN=Usp44
PE=2 SV=3
Length = 711
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 7 KGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKR 55
KG +GHYTAY + W + ND + ++ AYILFY +R
Sbjct: 629 KGFGSGHYTAYCYNSEGGFWVHCNDSKLSMCTMEEVRKAQAYILFYTQR 677
>sp|Q3UJD6|UBP19_MOUSE Ubiquitin carboxyl-terminal hydrolase 19 OS=Mus musculus GN=Usp19
PE=2 SV=1
Length = 1360
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 8 GVSAGHYTAYTLHPNTKE-------WHYFNDETVLEQRPQDEDFNNAYILFYKKRD 56
G+ GHYTA PN + W F+D TV AY+LFY++R+
Sbjct: 1202 GMIGGHYTACARLPNDRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRRRN 1257
>sp|O94966|UBP19_HUMAN Ubiquitin carboxyl-terminal hydrolase 19 OS=Homo sapiens GN=USP19
PE=1 SV=2
Length = 1318
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 8 GVSAGHYTAYTLHPNTKE-------WHYFNDETVLEQRPQDEDFNNAYILFYKKRD 56
G+ GHYTA PN + W F+D TV AY+LFY++R+
Sbjct: 1160 GMIGGHYTACARLPNDRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRRRN 1215
>sp|Q5ZM45|UBP48_CHICK Ubiquitin carboxyl-terminal hydrolase 48 OS=Gallus gallus GN=USP48
PE=2 SV=1
Length = 1033
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 7 KGVSA--GHYTAYTLHPNTKEWHYFNDETV 34
+GVSA GHY A+ P T EW+ FNDE +
Sbjct: 343 RGVSAYSGHYIAHVKDPQTGEWYKFNDEDI 372
>sp|Q70CQ4|UBP31_HUMAN Ubiquitin carboxyl-terminal hydrolase 31 OS=Homo sapiens GN=USP31
PE=2 SV=2
Length = 1352
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 9 VSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKR 55
+ GHYTAY + W+ F+D V + + AYILFY++R
Sbjct: 719 MQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQTAYILFYQRR 765
>sp|Q9R085|UBP15_RAT Ubiquitin carboxyl-terminal hydrolase 15 OS=Rattus norvegicus
GN=Usp15 PE=1 SV=1
Length = 952
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 13 HYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRD 56
HYTA+ + + +W+YF+D +V AY+LFY+++D
Sbjct: 862 HYTAFAKNKDDGKWYYFDDSSVSSASEDQIVSKAAYVLFYQRQD 905
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,693,407
Number of Sequences: 539616
Number of extensions: 1029913
Number of successful extensions: 1639
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1547
Number of HSP's gapped (non-prelim): 116
length of query: 66
length of database: 191,569,459
effective HSP length: 38
effective length of query: 28
effective length of database: 171,064,051
effective search space: 4789793428
effective search space used: 4789793428
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)