Query psy7177
Match_columns 66
No_of_seqs 191 out of 1007
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 20:10:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nhe_A Ubiquitin carboxyl-term 99.9 2.3E-23 7.9E-28 134.6 8.1 60 1-60 288-347 (348)
2 2y6e_A Ubiquitin carboxyl-term 99.9 3.4E-23 1.2E-27 135.9 8.3 60 1-60 304-363 (367)
3 2gfo_A Ubiquitin carboxyl-term 99.9 4.9E-22 1.7E-26 132.5 5.7 56 1-56 341-396 (396)
4 3i3t_A Ubiquitin carboxyl-term 99.9 2.1E-22 7.3E-27 130.3 3.5 57 1-59 298-354 (355)
5 1vjv_A Ubiquitin carboxyl-term 99.8 9.7E-22 3.3E-26 130.8 5.3 56 1-56 350-414 (415)
6 1nb8_A Ubiquitin carboxyl-term 99.8 1.5E-21 5E-26 128.4 4.3 59 1-59 245-318 (353)
7 3mhs_A Ubiquitin carboxyl-term 99.8 3.9E-21 1.3E-25 129.8 5.4 55 1-56 420-474 (476)
8 2ayn_A Ubiquitin carboxyl-term 99.8 1.3E-21 4.4E-26 129.3 2.8 58 1-59 332-397 (404)
9 2f1z_A Ubiquitin carboxyl-term 99.8 1.6E-20 5.5E-25 128.6 4.8 59 1-59 414-487 (522)
10 3ihp_A Ubiquitin carboxyl-term 99.7 4E-18 1.4E-22 123.0 6.7 52 1-56 801-853 (854)
11 2vhf_A Ubiquitin carboxyl-term 98.1 1.2E-06 4.1E-11 59.0 3.1 28 1-32 281-309 (374)
12 3mp2_A Non-structural protein 86.0 1.1 3.8E-05 28.0 4.0 32 3-38 164-195 (211)
13 1qmy_A Protease, leader protea 82.7 4.5 0.00015 24.2 5.4 45 5-56 110-156 (167)
14 1v8h_A Sulfur oxidation protei 76.3 7.7 0.00026 21.4 5.2 39 12-57 44-82 (107)
15 2fe8_A PP1AB, ORF1AB, replicas 76.2 4 0.00014 26.9 4.2 32 5-39 265-296 (315)
16 4ekf_A Adenain; alpha and beta 75.0 3.1 0.00011 25.8 3.2 31 1-31 41-72 (204)
17 2oxg_Z SOXZ protein; immunoglo 69.3 8.6 0.0003 21.2 4.0 39 12-57 45-83 (108)
18 2ww6_A Fibritin, T4 fibritin; 54.5 5.9 0.0002 16.8 1.1 14 16-31 12-25 (27)
19 1r75_A Hypothetical protein; s 45.2 11 0.00039 22.0 1.7 15 22-36 49-63 (141)
20 3ie4_A GRAM-negative binding p 43.3 26 0.00087 19.4 3.0 25 9-33 42-66 (107)
21 3o65_A Putative ataxin-3-like 40.9 26 0.0009 21.4 3.0 45 12-58 119-171 (191)
22 1ynx_A Replication factor-A pr 39.5 37 0.0013 18.3 3.3 35 22-56 70-104 (114)
23 3aqy_A Beta-1,3-glucan-binding 37.5 37 0.0013 18.6 3.0 25 9-33 43-67 (106)
24 3hia_A Choline binding protein 36.4 17 0.00057 19.3 1.4 11 23-33 42-52 (94)
25 3u5e_V L17A, YL32, 60S ribosom 35.1 55 0.0019 19.0 3.6 19 22-40 88-106 (137)
26 1vq8_K 50S ribosomal protein L 34.6 54 0.0019 18.8 3.5 19 22-40 83-101 (132)
27 1h8g_A Major autolysin; cholin 33.8 19 0.00066 19.0 1.4 10 23-32 22-31 (95)
28 2jq5_A SEC-C motif; structural 33.2 22 0.00074 20.3 1.6 14 17-32 112-125 (128)
29 3v2d_O 50S ribosomal protein L 32.9 62 0.0021 18.3 3.5 19 22-40 72-90 (122)
30 2fe0_A SMP-1, small myristoyla 32.6 27 0.00092 20.2 2.0 15 22-36 49-63 (136)
31 2kha_A Beta-1,3-glucan-binding 32.1 52 0.0018 18.8 3.1 24 9-32 52-75 (130)
32 3u4z_A Telomerase-associated p 32.0 18 0.00062 19.5 1.1 18 23-41 62-79 (109)
33 1cmx_A Protein (ubiquitin YUH1 30.7 47 0.0016 20.8 3.0 21 11-33 164-184 (235)
34 3rii_A Ubiquitin carboxyl-term 30.6 40 0.0014 21.0 2.7 23 12-36 168-190 (233)
35 4dm9_A Ubiquitin carboxyl-term 29.5 44 0.0015 20.8 2.7 24 11-36 164-187 (228)
36 3r8s_K 50S ribosomal protein L 28.7 61 0.0021 18.4 3.0 19 22-40 72-90 (122)
37 2wdt_A Ubiquitin carboxyl-term 28.7 52 0.0018 20.5 3.0 25 11-37 162-186 (232)
38 3bbo_M Ribosomal protein L14; 27.5 51 0.0017 18.7 2.5 19 22-40 72-90 (121)
39 3s35_X Vascular endothelial gr 27.4 36 0.0012 17.5 1.8 14 8-21 83-96 (122)
40 1xd3_A Ubiquitin carboxyl-term 27.4 50 0.0017 20.5 2.7 25 11-37 167-191 (230)
41 2ff3_A Gelsolin; protein-prote 27.0 98 0.0033 18.0 4.3 30 26-56 42-74 (150)
42 4hwn_A FC receptor-like A; FCR 26.5 48 0.0016 17.1 2.2 19 8-26 69-87 (108)
43 1whi_A Ribosomal protein L14; 26.1 55 0.0019 18.5 2.5 19 22-40 72-90 (122)
44 2oyz_A UPF0345 protein VPA0057 25.8 86 0.003 17.0 3.6 36 17-52 53-93 (94)
45 3j21_J 50S ribosomal protein L 24.7 62 0.0021 18.8 2.6 19 22-40 92-110 (141)
46 4gym_A Glyoxalase/bleomycin re 24.5 78 0.0027 16.9 3.0 16 11-26 113-128 (149)
47 3cip_G Gelsolin; actin, dictyo 24.1 1E+02 0.0035 17.2 4.2 30 26-56 23-55 (128)
48 1hcx_A Major autolysin; cholin 23.4 38 0.0013 18.8 1.5 11 23-33 54-64 (127)
49 1pfs_A PF3 SSDBP, PF3 single-s 22.7 62 0.0021 16.9 2.1 26 9-34 48-75 (78)
50 3rob_A Uncharacterized conserv 22.6 63 0.0022 17.9 2.4 23 11-33 112-134 (139)
51 2k3u_B C5AR(P7-28S) peptide, c 22.5 37 0.0013 13.8 1.0 7 8-14 3-9 (26)
52 1flt_X FLT-1, VGR1, FMS-like t 22.0 99 0.0034 16.3 3.4 27 2-30 61-88 (95)
53 4dcz_A DNAJ-like protein Mg200 20.0 79 0.0027 16.9 2.2 19 7-31 51-72 (92)
No 1
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=99.89 E-value=2.3e-23 Score=134.55 Aligned_cols=60 Identities=37% Similarity=0.597 Sum_probs=53.8
Q ss_pred CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEEcCCCCC
Q psy7177 1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDSD 60 (66)
Q Consensus 1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~~~~~~ 60 (66)
|||+|.|++.+|||+||+|...+++|++|||+.|++++.+++.+.+||||||+|++..++
T Consensus 288 avv~H~G~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aY~LfY~r~~~~~~ 347 (348)
T 3nhe_A 288 AVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASPPSR 347 (348)
T ss_dssp EEEEEEECSSCEEEEEEEECTTTCCEEEEETTEEEEECGGGTCCTTEEEEEEEECC----
T ss_pred EEEEccCCCCCcccEEEEccCCCCcEEEEeCCCceECCHHHcCCCCceEEEEEecCCCCC
Confidence 699999999999999999997788999999999999999999999999999999986553
No 2
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=99.89 E-value=3.4e-23 Score=135.94 Aligned_cols=60 Identities=30% Similarity=0.550 Sum_probs=54.3
Q ss_pred CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEEcCCCCC
Q psy7177 1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDSD 60 (66)
Q Consensus 1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~~~~~~ 60 (66)
|||+|.|++++|||+||+|+..+++|++|||+.|++++.+++.+.+||||||+|++.+.+
T Consensus 304 avv~H~G~~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~~~ 363 (367)
T 2y6e_A 304 AVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDEFY 363 (367)
T ss_dssp EEEEEECSSSSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC---
T ss_pred EEeecCCCCCCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCCCC
Confidence 799999999999999999997778999999999999999999999999999999976543
No 3
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=99.85 E-value=4.9e-22 Score=132.47 Aligned_cols=56 Identities=30% Similarity=0.543 Sum_probs=52.5
Q ss_pred CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEEcC
Q psy7177 1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRD 56 (66)
Q Consensus 1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~~ 56 (66)
|||+|.|++++|||+||+|+..+++||+|||+.|++++.+++.+.+||||||+|++
T Consensus 341 avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 341 SVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSLG 396 (396)
T ss_dssp EEEEEESCTTTCEEEEEEEETTTTEEEEEETTEEEECCHHHHSCTTEEEEEEECC-
T ss_pred EEEEecCCCCCCceEEEEcCCCCCCEEEEeCCCeEECCHHHcCCCCceEEEEEEcC
Confidence 79999999999999999999767899999999999999999999999999999874
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=99.85 E-value=2.1e-22 Score=130.29 Aligned_cols=57 Identities=30% Similarity=0.480 Sum_probs=50.5
Q ss_pred CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEEcCCCC
Q psy7177 1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDS 59 (66)
Q Consensus 1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~~~~~ 59 (66)
|||+|.|++++|||+||+|. .++|++|||+.|++++.+++.+.+||||||+|++..+
T Consensus 298 avv~H~G~~~~GHY~~~~~~--~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~~~ 354 (355)
T 3i3t_A 298 ALCNHSGSVHYGHYTALCRC--QTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEPP 354 (355)
T ss_dssp EEEEEEEETTEEEEEEEEEE--TTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC----
T ss_pred EEEEecCCCCCCeEEEEEEc--CCeEEEEcCCCcEECCHHHcCCCCcEEEEEEeccCCC
Confidence 69999999999999999998 4679999999999999999999999999999987543
No 5
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=99.84 E-value=9.7e-22 Score=130.84 Aligned_cols=56 Identities=25% Similarity=0.395 Sum_probs=50.6
Q ss_pred CEEEeee-cCCCCeEEEEEEC-CCCCcEEEEcCceEEEcCCCcCCCCC-------eEEEEEEEcC
Q psy7177 1 MCVRPSK-GVSAGHYTAYTLH-PNTKEWHYFNDETVLEQRPQDEDFNN-------AYILFYKKRD 56 (66)
Q Consensus 1 avv~H~G-~~~~GHY~a~~~~-~~~~~W~~fdD~~V~~~~~~~~~~~~-------aYiLfY~r~~ 56 (66)
|||+|.| ++++|||+||+|+ ..+++||+|||+.|++++.+++.... ||||||+|++
T Consensus 350 aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 350 GVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGFG 414 (415)
T ss_dssp EEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEETT
T ss_pred EEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhhcCCCCcceEEEEEEEecC
Confidence 7999999 8999999999998 56889999999999999998876544 9999999985
No 6
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=99.83 E-value=1.5e-21 Score=128.38 Aligned_cols=59 Identities=25% Similarity=0.428 Sum_probs=52.0
Q ss_pred CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCC---------------CCCeEEEEEEEcCCCC
Q psy7177 1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDED---------------FNNAYILFYKKRDEDS 59 (66)
Q Consensus 1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~---------------~~~aYiLfY~r~~~~~ 59 (66)
|||+|.|++++|||+||+|+..+++||+|||+.|++++.+++. ..+||||||+|++..+
T Consensus 245 avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~~~~~ 318 (353)
T 1nb8_A 245 AVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKLS 318 (353)
T ss_dssp EEEEEESSTTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-------CCEEEEEEEEEETTTHH
T ss_pred EEEEEeCCCCCcEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCCccccccCcCCeEEEEEEEECchhh
Confidence 7999999999999999999866899999999999999877653 3689999999987643
No 7
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.83 E-value=3.9e-21 Score=129.85 Aligned_cols=55 Identities=31% Similarity=0.489 Sum_probs=52.1
Q ss_pred CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEEcC
Q psy7177 1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRD 56 (66)
Q Consensus 1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~~ 56 (66)
|||+|.|++++|||++|+|.. +++||+|||+.|++++++++...+||||||+|++
T Consensus 420 avv~H~G~~~~GHY~a~vr~~-~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 474 (476)
T 3mhs_A 420 GIVSHKGTVNEGHYIAFCKIS-GGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQ 474 (476)
T ss_dssp EEEEEEECSSSEEEEEEEECT-TSCEEEEETTEEEEECHHHHTTSCEEEEEEEEEE
T ss_pred EEEEeCCCCCCCceEEEEECC-CCcEEEEeCCceEECCHHHhccCCcEEEEEEEec
Confidence 699999999999999999985 7899999999999999999999999999999986
No 8
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=99.83 E-value=1.3e-21 Score=129.27 Aligned_cols=58 Identities=28% Similarity=0.481 Sum_probs=49.2
Q ss_pred CEEEeee-cCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCC-------eEEEEEEEcCCCC
Q psy7177 1 MCVRPSK-GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNN-------AYILFYKKRDEDS 59 (66)
Q Consensus 1 avv~H~G-~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~-------aYiLfY~r~~~~~ 59 (66)
|||+|.| ++++|||+||+|+. +++||+|||+.|++++.+++.... ||||||+|++...
T Consensus 332 avv~H~G~s~~~GHY~a~v~~~-~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~~~~ 397 (404)
T 2ayn_A 332 AVLTHQGRSSSSGHYVSWVKRK-QDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPRRVEI 397 (404)
T ss_dssp EEEEEESSSTTSSEEEEEEEEE-TTEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEECC----
T ss_pred EEEEecCCCCCCCCeEEEEECC-CCeEEEeecccceecCHHHHHhhhCCCCCceEEEEEEEecCCCC
Confidence 6999999 79999999999984 789999999999999988876544 9999999987654
No 9
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.81 E-value=1.6e-20 Score=128.62 Aligned_cols=59 Identities=25% Similarity=0.428 Sum_probs=51.9
Q ss_pred CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCC---------------CCCeEEEEEEEcCCCC
Q psy7177 1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDED---------------FNNAYILFYKKRDEDS 59 (66)
Q Consensus 1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~---------------~~~aYiLfY~r~~~~~ 59 (66)
|||+|.|++++|||+||+|+..+++||+|||+.|++++.+++. ..+||||||+|++..+
T Consensus 414 avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~~~~~ 487 (522)
T 2f1z_A 414 AVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKLS 487 (522)
T ss_dssp EEEEEECSSSCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC--------CEEEEEEEEEETTSHH
T ss_pred EEEEecccCCCceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCCccccccCcCCceEEEEEEECCchH
Confidence 7999999989999999999866889999999999999877654 3679999999987643
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.73 E-value=4e-18 Score=123.03 Aligned_cols=52 Identities=21% Similarity=0.437 Sum_probs=47.1
Q ss_pred CEEEeee-cCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEEcC
Q psy7177 1 MCVRPSK-GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRD 56 (66)
Q Consensus 1 avv~H~G-~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~~ 56 (66)
|||+|.| ++++|||+||+|. +++|++|||+.|+++ ++.....||||||+|.+
T Consensus 801 avi~H~G~~~~~GHY~~~~~~--~~~W~~~nD~~V~~~--~~~~~~~aYilfY~R~~ 853 (854)
T 3ihp_A 801 AFISHMGTSTMCGHYVCHIKK--EGRWVIYNDQKVCAS--EKPPKDLGYIYFYQRVA 853 (854)
T ss_dssp EEEEEESSCSSCCEEEEEEEE--TTEEEEEETTEEEEC--SSCCTTSCSEEEEEECC
T ss_pred EEEEeecCCCCCcCeEEEEEe--CCEEEEEECCeeEEc--cccCCCcceEEEEEecC
Confidence 6999999 8889999999998 589999999999997 44577899999999976
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=98.14 E-value=1.2e-06 Score=59.02 Aligned_cols=28 Identities=18% Similarity=0.548 Sum_probs=22.8
Q ss_pred CEEEeeecCCCCeEEEEEECC-CCCcEEEEcCc
Q psy7177 1 MCVRPSKGVSAGHYTAYTLHP-NTKEWHYFNDE 32 (66)
Q Consensus 1 avv~H~G~~~~GHY~a~~~~~-~~~~W~~fdD~ 32 (66)
|||+ +++|||+||||.. .+++|+.||-.
T Consensus 281 aVlt----adsgHYvafVK~~~~d~~W~~FDsm 309 (374)
T 2vhf_A 281 AVLC----IETSHYVAFVKYGKDDSAWLFFDSM 309 (374)
T ss_dssp EEEE----EETTEEEEEEECSSSTTCEEEEETT
T ss_pred EEEE----ccCCceEEEEEecCCCCCeEEEech
Confidence 4666 8999999999973 37899999863
No 12
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=85.95 E-value=1.1 Score=27.99 Aligned_cols=32 Identities=9% Similarity=0.112 Sum_probs=25.8
Q ss_pred EEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcC
Q psy7177 3 VRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQR 38 (66)
Q Consensus 3 v~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~ 38 (66)
++-.|+.++|||+.+.... + +.+|-..+.+++
T Consensus 164 ~vF~G~~~~GHY~~~~~~~--~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 164 AVYTGTTQNGHYMVDDIEH--G--YCVDGMGIKPLK 195 (211)
T ss_dssp EEEESCTTTCEEEEEETTT--T--EEEETTEEECCC
T ss_pred EEEEcCCCCceEEEEeccc--c--eEEeCCceeEcc
Confidence 3457889999999997653 2 899999999976
No 13
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=82.65 E-value=4.5 Score=24.18 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=31.0
Q ss_pred eee--cCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEEcC
Q psy7177 5 PSK--GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRD 56 (66)
Q Consensus 5 H~G--~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~~ 56 (66)
|.| ....+|-+-++.- ++.||.+||+...+-+++.. =+|+|..-+
T Consensus 110 hAgIflkg~eHAVFa~~T--S~GWyaiDDe~fypwtPdps-----dVLVfvPyD 156 (167)
T 1qmy_A 110 HAGIFLKGQEHAVFACVT--SNGWYAIDDEDFYPWTPDPS-----DVLVFVPYD 156 (167)
T ss_dssp EEEEEEETTTEEEEEECC--TTSSEEEETTEEEECCCCGG-----GEEEEEECC
T ss_pred hhheeecCCCceEEEEEc--cCceEEecccccccCCCChh-----hEEEEccCC
Confidence 556 3456788777765 56899999999999766432 256665544
No 14
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=76.28 E-value=7.7 Score=21.40 Aligned_cols=39 Identities=28% Similarity=0.397 Sum_probs=31.6
Q ss_pred CeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEEcCC
Q psy7177 12 GHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDE 57 (66)
Q Consensus 12 GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~~~ 57 (66)
.||+..+. +.+||..|-.++.....++++|+-|+-+-..
T Consensus 44 a~~I~~v~-------~~~ng~~v~~~~~~~~iS~nP~~~F~~~~~~ 82 (107)
T 1v8h_A 44 AKYINLVE-------VYFEGEKVAEARPGPSTSANPLYAFKFKAEK 82 (107)
T ss_dssp CBCEEEEE-------EEETTEEEEEECCCSSCCSSCEEEEEEECCS
T ss_pred hHheEEEE-------EEECCEEEEEEEeCCccccCCeEEEEEecCC
Confidence 57766665 3579999999999999999999999877543
No 15
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=76.22 E-value=4 Score=26.87 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=25.1
Q ss_pred eeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCC
Q psy7177 5 PSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRP 39 (66)
Q Consensus 5 H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~ 39 (66)
-.|+.+.|||+-+.... .. +.+|-..+.+++.
T Consensus 265 F~G~~~~GHYt~~~~~~--~~-~~~Dg~~~~~~~~ 296 (315)
T 2fe8_A 265 YTGNYQCGHYTHITAKE--TL-YRIDGAHLTKMSE 296 (315)
T ss_dssp EESCGGGCEEEEEEESS--SE-EEEETTEEEEESE
T ss_pred EECCCCccceEEEecCC--ce-eEEeCCcceeccc
Confidence 47888899999888742 22 7999999999864
No 16
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=75.05 E-value=3.1 Score=25.81 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=23.0
Q ss_pred CEEEeee-cCCCCeEEEEEECCCCCcEEEEcC
Q psy7177 1 MCVRPSK-GVSAGHYTAYTLHPNTKEWHYFND 31 (66)
Q Consensus 1 avv~H~G-~~~~GHY~a~~~~~~~~~W~~fdD 31 (66)
|||+-.+ ...+=|+.|++.++.+.+.|.||-
T Consensus 41 AIVNTg~retGGvHWiA~Aw~P~s~~~YmFDP 72 (204)
T 4ekf_A 41 AIVNTAGRETGGVHWMAFAWNPRSKTCYLFEP 72 (204)
T ss_dssp EEEESCC----CCCEEEEEEETTTTEEEEECT
T ss_pred eEEecCCcccCceeEEEeEecCCcceEEEeCC
Confidence 4666656 566669999999998889999984
No 17
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=69.33 E-value=8.6 Score=21.24 Aligned_cols=39 Identities=18% Similarity=0.091 Sum_probs=31.4
Q ss_pred CeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEEcCC
Q psy7177 12 GHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDE 57 (66)
Q Consensus 12 GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~~~ 57 (66)
.||+..+. +.+|+..|-.++.....++++|+-|+-+-..
T Consensus 45 a~~I~~v~-------~~~ng~~v~~~~~~~~iS~NP~~~F~~~~~~ 83 (108)
T 2oxg_Z 45 RSIINRFT-------CELNGVNVVDVAIDPAVSTNPYFEFDAKVDA 83 (108)
T ss_dssp CBCEEEEE-------EEETTEEEEEEEECTTBCSSCEEEEEEEECS
T ss_pred hHheEEEE-------EEECCEEEEEEEeCCccccCCeEEEEEecCC
Confidence 57776665 3579999999999988999999999876543
No 18
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=54.48 E-value=5.9 Score=16.85 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=10.2
Q ss_pred EEEECCCCCcEEEEcC
Q psy7177 16 AYTLHPNTKEWHYFND 31 (66)
Q Consensus 16 a~~~~~~~~~W~~fdD 31 (66)
+|+|. ++.|....+
T Consensus 12 ~Yvr~--dg~WV~l~t 25 (27)
T 2ww6_A 12 AYVRK--FGEWVLLST 25 (27)
T ss_dssp EEEEE--TTEEEEGGG
T ss_pred eeEEE--cCeEEEccc
Confidence 57887 788987654
No 19
>1r75_A Hypothetical protein; structural genomics, unknown function, PSI, protein structur initiative; 1.86A {Leishmania major} SCOP: b.134.1.1
Probab=45.25 E-value=11 Score=22.04 Aligned_cols=15 Identities=27% Similarity=0.809 Sum_probs=11.5
Q ss_pred CCCcEEEEcCceEEE
Q psy7177 22 NTKEWHYFNDETVLE 36 (66)
Q Consensus 22 ~~~~W~~fdD~~V~~ 36 (66)
.+++|+.+||+.--.
T Consensus 49 ~~~~WaFYNDT~~ye 63 (141)
T 1r75_A 49 EARRWAFYNDSKELI 63 (141)
T ss_dssp TTTEEEEEECCSSEE
T ss_pred CCCEEEEEeCCceEE
Confidence 368999999986433
No 20
>3ie4_A GRAM-negative binding protein 3; immunoglobulin fold, immune system; 1.45A {Drosophila melanogaster}
Probab=43.35 E-value=26 Score=19.38 Aligned_cols=25 Identities=16% Similarity=0.430 Sum_probs=20.8
Q ss_pred CCCCeEEEEEECCCCCcEEEEcCce
Q psy7177 9 VSAGHYTAYTLHPNTKEWHYFNDET 33 (66)
Q Consensus 9 ~~~GHY~a~~~~~~~~~W~~fdD~~ 33 (66)
...|++...+....+|+|..-|++.
T Consensus 42 ~~~g~~~~dit~~~~GrW~~~d~~~ 66 (107)
T 3ie4_A 42 LEAGTWARDIVKAKNGRWTFRDRIT 66 (107)
T ss_dssp SCCCSEEEEECCCBTTEEEEEESSC
T ss_pred ccccEeEEeEeEecCCEEEEECCCc
Confidence 4569999999988899999887754
No 21
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=40.89 E-value=26 Score=21.41 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=28.7
Q ss_pred CeEEEEEECCCCCcEEEEcCceEEEcCCCc--------CCCCCeEEEEEEEcCCC
Q psy7177 12 GHYTAYTLHPNTKEWHYFNDETVLEQRPQD--------EDFNNAYILFYKKRDED 58 (66)
Q Consensus 12 GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~--------~~~~~aYiLfY~r~~~~ 58 (66)
-|.++.-|- +++||.+|-..-.|.-..+ -.....|-+|-.+-+.+
T Consensus 119 ~HWfaiRki--gg~WyNLdS~l~~P~~i~~~yL~~fL~ql~~eg~siFvV~g~lP 171 (191)
T 3o65_A 119 QHWFTIRKF--GKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDLP 171 (191)
T ss_dssp SCEEEEEEE--TTEEEECCTTSSSCEEECHHHHHHHHGGGGSTTEEEEEEESCCC
T ss_pred cceeeEEec--CCEEEEccCCCCCCCCcChHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 688877665 7899999986433321111 12467888888875433
No 22
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=39.52 E-value=37 Score=18.34 Aligned_cols=35 Identities=14% Similarity=0.271 Sum_probs=27.5
Q ss_pred CCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEEcC
Q psy7177 22 NTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRD 56 (66)
Q Consensus 22 ~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~~ 56 (66)
..|+||.+..-.|++.+..--.....|.|...+..
T Consensus 70 ~eG~vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T 104 (114)
T 1ynx_A 70 QEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDT 104 (114)
T ss_dssp CSSSEEEEESCEEEECCTTTSSSSSCEEEEECSSC
T ss_pred ccCcEEEECCcEEEECCCCcccCCCCEEEEECCCC
Confidence 35889999999999987765556789988876654
No 23
>3aqy_A Beta-1,3-glucan-binding protein; beta-sandwich, immune receptor, sugar bindi protein; 1.58A {Plodia interpunctella} PDB: 3aqz_A* 3aqx_A* 2rqe_A
Probab=37.48 E-value=37 Score=18.64 Aligned_cols=25 Identities=20% Similarity=0.577 Sum_probs=20.7
Q ss_pred CCCCeEEEEEECCCCCcEEEEcCce
Q psy7177 9 VSAGHYTAYTLHPNTKEWHYFNDET 33 (66)
Q Consensus 9 ~~~GHY~a~~~~~~~~~W~~fdD~~ 33 (66)
.+.|.+...+....+|+|..-|++.
T Consensus 43 ~~~g~~~~dit~~~~GrW~~~d~~~ 67 (106)
T 3aqy_A 43 LEAGHWARDITKPKEGRWTFRDRNV 67 (106)
T ss_dssp SCCCSEEEEECCCBTTEEEEEECSC
T ss_pred cccceeeeeeeEecCCEEEEECCce
Confidence 4569999999998899999888753
No 24
>3hia_A Choline binding protein; beta hairpin; 2.38A {Streptococcus pneumoniae}
Probab=36.36 E-value=17 Score=19.32 Aligned_cols=11 Identities=27% Similarity=0.773 Sum_probs=8.6
Q ss_pred CCcEEEEcCce
Q psy7177 23 TKEWHYFNDET 33 (66)
Q Consensus 23 ~~~W~~fdD~~ 33 (66)
+++||.||++-
T Consensus 42 ~g~wYYf~~~G 52 (94)
T 3hia_A 42 NGSWYYLNSNG 52 (94)
T ss_dssp TTEEEEECTTS
T ss_pred CCEEEEECCCC
Confidence 67899998753
No 25
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=35.10 E-value=55 Score=18.96 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=15.5
Q ss_pred CCCcEEEEcCceEEEcCCC
Q psy7177 22 NTKEWHYFNDETVLEQRPQ 40 (66)
Q Consensus 22 ~~~~W~~fdD~~V~~~~~~ 40 (66)
.+|.|.+|||..+-.++.+
T Consensus 88 ~dG~~i~FddNA~Vlin~~ 106 (137)
T 3u5e_V 88 RDGVFLYFEDNAGVIANPK 106 (137)
T ss_dssp TTSCEEEESSCEEEEBCTT
T ss_pred CCCeEEEcCCceEEEECCC
Confidence 3789999999998877654
No 26
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=34.64 E-value=54 Score=18.84 Aligned_cols=19 Identities=11% Similarity=0.071 Sum_probs=15.4
Q ss_pred CCCcEEEEcCceEEEcCCC
Q psy7177 22 NTKEWHYFNDETVLEQRPQ 40 (66)
Q Consensus 22 ~~~~W~~fdD~~V~~~~~~ 40 (66)
.+|.|.+|||..+-.++.+
T Consensus 83 ~dG~~i~FddNA~Vlin~~ 101 (132)
T 1vq8_K 83 PDGTRVKFEDNAAVIVDEN 101 (132)
T ss_dssp TTSCEEEESSCEEEEECTT
T ss_pred CCCcEEEeCCceEEEECCC
Confidence 3788999999988777654
No 27
>1h8g_A Major autolysin; choline-binding domain, cell WALL attachment; 2.4A {Streptococcus pneumoniae} SCOP: b.109.1.1
Probab=33.79 E-value=19 Score=19.02 Aligned_cols=10 Identities=50% Similarity=1.305 Sum_probs=7.2
Q ss_pred CCcEEEEcCc
Q psy7177 23 TKEWHYFNDE 32 (66)
Q Consensus 23 ~~~W~~fdD~ 32 (66)
+++||.||++
T Consensus 22 ~g~wYYf~~~ 31 (95)
T 1h8g_A 22 ADKWYYFNEE 31 (95)
T ss_dssp TTEEEEECTT
T ss_pred CCEEEEECCC
Confidence 5678888764
No 28
>2jq5_A SEC-C motif; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; NMR {Rhodopseudomonas palustris}
Probab=33.20 E-value=22 Score=20.27 Aligned_cols=14 Identities=14% Similarity=0.477 Sum_probs=10.6
Q ss_pred EEECCCCCcEEEEcCc
Q psy7177 17 YTLHPNTKEWHYFNDE 32 (66)
Q Consensus 17 ~~~~~~~~~W~~fdD~ 32 (66)
|+|. +|+||+.|-.
T Consensus 112 F~r~--~g~W~YvDG~ 125 (128)
T 2jq5_A 112 FRKA--RGRWYFSEGE 125 (128)
T ss_dssp EEEE--TTEEEEEEEE
T ss_pred EEEE--CCEEEEeCCE
Confidence 6665 7899998864
No 29
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=32.91 E-value=62 Score=18.34 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=15.4
Q ss_pred CCCcEEEEcCceEEEcCCC
Q psy7177 22 NTKEWHYFNDETVLEQRPQ 40 (66)
Q Consensus 22 ~~~~W~~fdD~~V~~~~~~ 40 (66)
.+|.|.+|||..+--++.+
T Consensus 72 ~dG~~i~FddNa~Vlin~~ 90 (122)
T 3v2d_O 72 PDGSAIRFDDNAAVIINNQ 90 (122)
T ss_dssp TTSCEEEESSCEEEEECTT
T ss_pred CCCcEEEcCCcEEEEECCC
Confidence 3688999999988777664
No 30
>2fe0_A SMP-1, small myristoylated protein 1; beta sheet, protein transport, membrane protein; NMR {Leishmania major} SCOP: b.134.1.1
Probab=32.56 E-value=27 Score=20.21 Aligned_cols=15 Identities=47% Similarity=1.001 Sum_probs=11.5
Q ss_pred CCCcEEEEcCceEEE
Q psy7177 22 NTKEWHYFNDETVLE 36 (66)
Q Consensus 22 ~~~~W~~fdD~~V~~ 36 (66)
.+++|..+||+.-.+
T Consensus 49 ~~~~WaFYNDT~~y~ 63 (136)
T 2fe0_A 49 KKKQWAYYNDTTQYE 63 (136)
T ss_dssp TTTEEEEEECCSSEE
T ss_pred CCCEEEEEeCCccEE
Confidence 368999999986433
No 31
>2kha_A Beta-1,3-glucan-binding protein; glycoprotein, immune response, innate immunity, secreted, sugar binding protein; NMR {Plodia interpunctella}
Probab=32.15 E-value=52 Score=18.78 Aligned_cols=24 Identities=21% Similarity=0.601 Sum_probs=20.3
Q ss_pred CCCCeEEEEEECCCCCcEEEEcCc
Q psy7177 9 VSAGHYTAYTLHPNTKEWHYFNDE 32 (66)
Q Consensus 9 ~~~GHY~a~~~~~~~~~W~~fdD~ 32 (66)
.+.|.+...+....+|+|..-|.+
T Consensus 52 ~~~G~~~~dit~~~~GrW~~~d~~ 75 (130)
T 2kha_A 52 LEAGHWARDITKPKEGRWTFRDRN 75 (130)
T ss_dssp CCCCSEEEEECSCSSSEEEEEETT
T ss_pred cccceeeeeeeeecCCEEEEECCc
Confidence 456999999999989999988765
No 32
>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila}
Probab=32.03 E-value=18 Score=19.51 Aligned_cols=18 Identities=28% Similarity=0.637 Sum_probs=11.1
Q ss_pred CCcEEEEcCceEEEcCCCc
Q psy7177 23 TKEWHYFNDETVLEQRPQD 41 (66)
Q Consensus 23 ~~~W~~fdD~~V~~~~~~~ 41 (66)
-++||+||. -|+.+-.++
T Consensus 62 inkwyyfne-fvrqiynde 79 (109)
T 3u4z_A 62 INKWYYFNE-FVRQIYNDE 79 (109)
T ss_dssp TTCEEEEEE-EEEEESSSC
T ss_pred hhhhhhHHH-HHHHHhhhH
Confidence 368999984 455553333
No 33
>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase, deubiquitinating enzyme, cysteine protease, enzyme specificity; 2.25A {Synthetic} SCOP: d.3.1.6
Probab=30.65 E-value=47 Score=20.80 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=17.8
Q ss_pred CCeEEEEEECCCCCcEEEEcCce
Q psy7177 11 AGHYTAYTLHPNTKEWHYFNDET 33 (66)
Q Consensus 11 ~GHY~a~~~~~~~~~W~~fdD~~ 33 (66)
.=||+|||.. +|.=|++|..+
T Consensus 164 ~~HFI~fV~~--~G~LyELDG~k 184 (235)
T 1cmx_A 164 NLHYITYVEE--NGGIFELDGRN 184 (235)
T ss_dssp SEEEEEEEEC--SSEEEEECTTC
T ss_pred CeEEEEEEee--CCEEEEecCCC
Confidence 4699999995 78899999776
No 34
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} SCOP: d.3.1.0 PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A
Probab=30.64 E-value=40 Score=21.00 Aligned_cols=23 Identities=9% Similarity=-0.009 Sum_probs=18.5
Q ss_pred CeEEEEEECCCCCcEEEEcCceEEE
Q psy7177 12 GHYTAYTLHPNTKEWHYFNDETVLE 36 (66)
Q Consensus 12 GHY~a~~~~~~~~~W~~fdD~~V~~ 36 (66)
=||+|||.. +|.=|+.|..+-.+
T Consensus 168 ~HFIafV~~--dG~LyELDG~k~gP 190 (233)
T 3rii_A 168 FHFVSYVPV--NGRLYELDGLREGP 190 (233)
T ss_dssp SEEEEEEEE--TTEEEEECTTSSSC
T ss_pred eeEEEEEEe--CCeEEEcCCCCCCC
Confidence 599999996 78899999876433
No 35
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A 2len_A
Probab=29.53 E-value=44 Score=20.79 Aligned_cols=24 Identities=4% Similarity=0.029 Sum_probs=18.9
Q ss_pred CCeEEEEEECCCCCcEEEEcCceEEE
Q psy7177 11 AGHYTAYTLHPNTKEWHYFNDETVLE 36 (66)
Q Consensus 11 ~GHY~a~~~~~~~~~W~~fdD~~V~~ 36 (66)
.=||+|||.. +|.=|..|..+-.+
T Consensus 164 ~~HFIafV~~--dG~LyELDG~k~gP 187 (228)
T 4dm9_A 164 NFHFILFNNV--DGHLYELDGRMPFP 187 (228)
T ss_dssp CEEEEEEEEE--TTEEEEECTTSSSC
T ss_pred CceEEEEEEe--CCeEEEcCCCCCCC
Confidence 4599999996 78899999876433
No 36
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=28.73 E-value=61 Score=18.38 Aligned_cols=19 Identities=5% Similarity=0.001 Sum_probs=15.3
Q ss_pred CCCcEEEEcCceEEEcCCC
Q psy7177 22 NTKEWHYFNDETVLEQRPQ 40 (66)
Q Consensus 22 ~~~~W~~fdD~~V~~~~~~ 40 (66)
.+|.|.+|||..+-.++.+
T Consensus 72 ~dG~~i~FddNa~Vlin~~ 90 (122)
T 3r8s_K 72 PDGSVIRFDGNACVLLNNN 90 (122)
T ss_dssp TTSCEEEESSCEEEEEETT
T ss_pred CCCcEEEcCCceEEEEeCC
Confidence 3788999999988777665
No 37
>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UB isopeptidase, UCH-L superfamily, cystein proteinase, peptid hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A
Probab=28.69 E-value=52 Score=20.49 Aligned_cols=25 Identities=4% Similarity=0.046 Sum_probs=19.2
Q ss_pred CCeEEEEEECCCCCcEEEEcCceEEEc
Q psy7177 11 AGHYTAYTLHPNTKEWHYFNDETVLEQ 37 (66)
Q Consensus 11 ~GHY~a~~~~~~~~~W~~fdD~~V~~~ 37 (66)
.=||+|||.. +|.=|+.|..+-.++
T Consensus 162 ~~HFI~fV~~--~G~LyELDG~k~gPi 186 (232)
T 2wdt_A 162 DTHFIVFVQI--EGKIIELDGRKDHPT 186 (232)
T ss_dssp CEEEEEEEES--SSEEEEECTTSSSCE
T ss_pred CeEEEEEEEe--CCEEEEccCCCCCCc
Confidence 3699999996 788889987664443
No 38
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=27.46 E-value=51 Score=18.66 Aligned_cols=19 Identities=5% Similarity=0.104 Sum_probs=15.4
Q ss_pred CCCcEEEEcCceEEEcCCC
Q psy7177 22 NTKEWHYFNDETVLEQRPQ 40 (66)
Q Consensus 22 ~~~~W~~fdD~~V~~~~~~ 40 (66)
.+|.|.+|||..+--++.+
T Consensus 72 ~dG~~i~FddNa~Vlin~~ 90 (121)
T 3bbo_M 72 DNGMIIRYDDNAAVIIDQE 90 (121)
T ss_dssp TTSCEECCSSCEEEECCTT
T ss_pred CCCCEEEeCCceEEEECCC
Confidence 3688999999998777664
No 39
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Probab=27.40 E-value=36 Score=17.46 Aligned_cols=14 Identities=21% Similarity=0.200 Sum_probs=11.5
Q ss_pred cCCCCeEEEEEECC
Q psy7177 8 GVSAGHYTAYTLHP 21 (66)
Q Consensus 8 ~~~~GHY~a~~~~~ 21 (66)
..++|-|+|.+.+.
T Consensus 83 ~~DsG~Y~C~a~n~ 96 (122)
T 3s35_X 83 RSDQGLYTCAASSG 96 (122)
T ss_dssp GGGCEEEEEEEECS
T ss_pred cccCEEEEEEEccC
Confidence 35789999999975
No 40
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A*
Probab=27.36 E-value=50 Score=20.51 Aligned_cols=25 Identities=8% Similarity=0.010 Sum_probs=19.4
Q ss_pred CCeEEEEEECCCCCcEEEEcCceEEEc
Q psy7177 11 AGHYTAYTLHPNTKEWHYFNDETVLEQ 37 (66)
Q Consensus 11 ~GHY~a~~~~~~~~~W~~fdD~~V~~~ 37 (66)
.=||+|||.. +|.=|.+|..+-.++
T Consensus 167 ~~HFI~fV~~--~G~LyELDG~k~gPi 191 (230)
T 1xd3_A 167 DLHFIALVHV--DGHLYELDGRKPFPI 191 (230)
T ss_dssp CEEEEEEEEE--TTEEEEECTTSSSCE
T ss_pred CeEEEEEEee--CCEEEEccCCCCCCe
Confidence 4599999996 788899987764444
No 41
>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G*
Probab=26.99 E-value=98 Score=17.96 Aligned_cols=30 Identities=10% Similarity=0.129 Sum_probs=21.4
Q ss_pred EEEEcCceEEEcCCCc---CCCCCeEEEEEEEcC
Q psy7177 26 WHYFNDETVLEQRPQD---EDFNNAYILFYKKRD 56 (66)
Q Consensus 26 W~~fdD~~V~~~~~~~---~~~~~aYiLfY~r~~ 56 (66)
| +.++....+++.+. .-+..+||+.|.-+.
T Consensus 42 W-rIe~~~~v~vp~~~~G~FysgD~YIVl~ty~~ 74 (150)
T 2ff3_A 42 W-RVEKFDLVPVPTNLYGDFFTGDAYVILKTVQL 74 (150)
T ss_dssp E-EEETTEEEECCGGGTTEEETTSEEEEEEEEEC
T ss_pred E-EEeCCEEEECChHHcCeecCCCeEEEEEEEec
Confidence 6 45566777887665 346899999997654
No 42
>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}
Probab=26.52 E-value=48 Score=17.10 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=13.3
Q ss_pred cCCCCeEEEEEECCCCCcE
Q psy7177 8 GVSAGHYTAYTLHPNTKEW 26 (66)
Q Consensus 8 ~~~~GHY~a~~~~~~~~~W 26 (66)
..++|.|.|.+++.....|
T Consensus 69 ~~dsG~Y~C~~~~~~~~~~ 87 (108)
T 4hwn_A 69 EDHSGSYWCEAATEDNQVW 87 (108)
T ss_dssp GGGCEEEEEEEECTTSSSE
T ss_pred cccCeEEEEEEEeCCCcee
Confidence 3578999999997532234
No 43
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=26.05 E-value=55 Score=18.53 Aligned_cols=19 Identities=11% Similarity=0.244 Sum_probs=15.2
Q ss_pred CCCcEEEEcCceEEEcCCC
Q psy7177 22 NTKEWHYFNDETVLEQRPQ 40 (66)
Q Consensus 22 ~~~~W~~fdD~~V~~~~~~ 40 (66)
.+|.|.+|||..+--++.+
T Consensus 72 ~dG~~i~FddNa~Vlin~~ 90 (122)
T 1whi_A 72 PDGSYIRFDENACVIIRDD 90 (122)
T ss_dssp TTSCEECCSSCEEEEECTT
T ss_pred CCCCEEEeCCceEEEECCC
Confidence 3688999999988777664
No 44
>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22
Probab=25.81 E-value=86 Score=16.95 Aligned_cols=36 Identities=11% Similarity=0.258 Sum_probs=23.4
Q ss_pred EEECCCCCcEEEEcCceEEEcCCCc-----CCCCCeEEEEE
Q psy7177 17 YTLHPNTKEWHYFNDETVLEQRPQD-----EDFNNAYILFY 52 (66)
Q Consensus 17 ~~~~~~~~~W~~fdD~~V~~~~~~~-----~~~~~aYiLfY 52 (66)
.++.+....|-.|.--.--.++.+. +....+|+.-|
T Consensus 53 ~V~lpg~~ew~~~~aGesF~Vpans~F~l~v~~~~~YlC~y 93 (94)
T 2oyz_A 53 VVKRVGEADWTTYSSGESFDVEGNSSFELQVKDATAYLCEY 93 (94)
T ss_dssp EEEETTCSSCEEEETTCEEEECSSEEEEEEESSCEEEEEEC
T ss_pred EEEcCCCCcCEEECCCCEEEECCCCEEEEEEcccEeEEEEc
Confidence 4555555678888776655565554 45578888776
No 45
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.71 E-value=62 Score=18.83 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=15.5
Q ss_pred CCCcEEEEcCceEEEcCCC
Q psy7177 22 NTKEWHYFNDETVLEQRPQ 40 (66)
Q Consensus 22 ~~~~W~~fdD~~V~~~~~~ 40 (66)
.+|.|.+|||..+-.++.+
T Consensus 92 ~dGs~i~FddNA~VLin~~ 110 (141)
T 3j21_J 92 LDGMRVKFEDNAAVIVTPE 110 (141)
T ss_dssp TTSCEECCSSCEEEEBCTT
T ss_pred CCCcEEEcCCcEEEEECCC
Confidence 3788999999998877654
No 46
>4gym_A Glyoxalase/bleomycin resistance protein/dioxygena; PSI-biology, midwest center for structural genomics, MCSG, oxidoreductase; HET: MSE; 1.56A {Conexibacter woesei}
Probab=24.47 E-value=78 Score=16.85 Aligned_cols=16 Identities=13% Similarity=0.112 Sum_probs=11.9
Q ss_pred CCeEEEEEECCCCCcE
Q psy7177 11 AGHYTAYTLHPNTKEW 26 (66)
Q Consensus 11 ~GHY~a~~~~~~~~~W 26 (66)
.|-|.+|+++++++.|
T Consensus 113 ~~~~~~~f~DPDGn~i 128 (149)
T 4gym_A 113 GFMYGRSFHDLDGHLW 128 (149)
T ss_dssp SSEEEEEEECTTCCEE
T ss_pred CCEEEEEEEcCCCCEE
Confidence 4558899999965555
No 47
>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S*
Probab=24.14 E-value=1e+02 Score=17.23 Aligned_cols=30 Identities=10% Similarity=0.129 Sum_probs=20.9
Q ss_pred EEEEcCceEEEcCCCc---CCCCCeEEEEEEEcC
Q psy7177 26 WHYFNDETVLEQRPQD---EDFNNAYILFYKKRD 56 (66)
Q Consensus 26 W~~fdD~~V~~~~~~~---~~~~~aYiLfY~r~~ 56 (66)
| +.++....+++.+. .-+..+||+.|.-+.
T Consensus 23 W-rIe~~~~~~vp~~~~G~Fy~gd~YIvl~ty~~ 55 (128)
T 3cip_G 23 W-RVEKFDLVPVPTNLYGDFFTGDAYVILKTVQL 55 (128)
T ss_dssp E-EEETTEEEECCGGGTTEEETTCEEEEEEEEEC
T ss_pred E-EEeCCEEEECChHHcCeecCCCeEEEEEEEec
Confidence 5 44566777877665 336899999997654
No 48
>1hcx_A Major autolysin; choline-binding domain, cell WALL attachment; HET: TPT DDQ; 2.6A {Streptococcus pneumoniae} SCOP: b.109.1.1 PDB: 1gvm_A* 2bml_A*
Probab=23.44 E-value=38 Score=18.80 Aligned_cols=11 Identities=45% Similarity=1.153 Sum_probs=8.1
Q ss_pred CCcEEEEcCce
Q psy7177 23 TKEWHYFNDET 33 (66)
Q Consensus 23 ~~~W~~fdD~~ 33 (66)
+++||.||++=
T Consensus 54 ~g~wYYf~~~G 64 (127)
T 1hcx_A 54 ADKWYYFNEEG 64 (127)
T ss_dssp SSCEEEECTTS
T ss_pred CCcEEEECCCC
Confidence 57888888753
No 49
>1pfs_A PF3 SSDBP, PF3 single-stranded DNA binding protein; viral, bacteriophage PF3; NMR {Pseudomonas phage PF3} SCOP: b.40.4.7
Probab=22.71 E-value=62 Score=16.93 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=17.0
Q ss_pred CCCCeEEEEEECC--CCCcEEEEcCceE
Q psy7177 9 VSAGHYTAYTLHP--NTKEWHYFNDETV 34 (66)
Q Consensus 9 ~~~GHY~a~~~~~--~~~~W~~fdD~~V 34 (66)
...|||-+-++.. ++.-|+.||-...
T Consensus 48 ~paG~Ye~d~~~~V~dgRlef~~Dprq~ 75 (78)
T 1pfs_A 48 IPAGSYQVPYRINVNNGRPELAFDFKAM 75 (78)
T ss_dssp CCSEEEEEEEEEEEETTEEEEEECTTSC
T ss_pred CCCCceecceEeeecCCcEEEEeChHHh
Confidence 3568987776642 2446999986543
No 50
>3rob_A Uncharacterized conserved protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.48A {Planctomyces limnophilus}
Probab=22.59 E-value=63 Score=17.85 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=18.1
Q ss_pred CCeEEEEEECCCCCcEEEEcCce
Q psy7177 11 AGHYTAYTLHPNTKEWHYFNDET 33 (66)
Q Consensus 11 ~GHY~a~~~~~~~~~W~~fdD~~ 33 (66)
.|++..-.|+..+|+|...-|.+
T Consensus 112 ~g~~~~v~rK~~dG~W~i~~d~~ 134 (139)
T 3rob_A 112 AGHAMSIFRRSMFGEWQLARDAN 134 (139)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEE
T ss_pred eccEEEEEEECCCCcEEEEEEhh
Confidence 57888877764589999988876
No 51
>2k3u_B C5AR(P7-28S) peptide, chemotaxis inhibitory protein; chemotaxis inhibitory protein (chips), sulfated tyrosine; HET: TYS; NMR {Staphylococcus aureus subsp}
Probab=22.52 E-value=37 Score=13.84 Aligned_cols=7 Identities=43% Similarity=0.752 Sum_probs=4.6
Q ss_pred cCCCCeE
Q psy7177 8 GVSAGHY 14 (66)
Q Consensus 8 ~~~~GHY 14 (66)
..+.|||
T Consensus 3 tpdyghy 9 (26)
T 2k3u_B 3 TPDYGHY 9 (26)
T ss_dssp CSCCCEE
T ss_pred cCccccc
Confidence 3567777
No 52
>1flt_X FLT-1, VGR1, FMS-like tyrosine kinase 1; complex (growth factor-transferase), FLT-1 receptor, cystine glycoprotein; 1.70A {Homo sapiens} SCOP: b.1.1.4 PDB: 1qsv_A 1qsz_A 1qty_X 2xac_C 1rv6_X*
Probab=22.03 E-value=99 Score=16.29 Aligned_cols=27 Identities=11% Similarity=-0.081 Sum_probs=16.8
Q ss_pred EEEeee-cCCCCeEEEEEECCCCCcEEEEc
Q psy7177 2 CVRPSK-GVSAGHYTAYTLHPNTKEWHYFN 30 (66)
Q Consensus 2 vv~H~G-~~~~GHY~a~~~~~~~~~W~~fd 30 (66)
+++|.- ....|.|.|-.+. +|++++-+
T Consensus 61 f~I~~~~~~~~g~y~C~a~~--~g~~~~S~ 88 (95)
T 1flt_X 61 FIISNATYKEIGLLTCEATV--NGHLYKTN 88 (95)
T ss_dssp EEESSCCGGGCEEEEEEEEE--TTEEEEEE
T ss_pred EEEeCCCcccCcEEEEEEEE--CCEEEEEE
Confidence 444444 5567888888776 56665543
No 53
>4dcz_A DNAJ-like protein Mg200; dimer, intra-domain symmetry AXIS, unknown function; 2.90A {Mycoplasma genitalium}
Probab=20.01 E-value=79 Score=16.88 Aligned_cols=19 Identities=26% Similarity=0.793 Sum_probs=12.2
Q ss_pred ecCCCCeEEEEEECCCCCcEE---EEcC
Q psy7177 7 KGVSAGHYTAYTLHPNTKEWH---YFND 31 (66)
Q Consensus 7 G~~~~GHY~a~~~~~~~~~W~---~fdD 31 (66)
|....||| + .+|.|. +||+
T Consensus 51 Gne~YGyY-----D-e~GEWVW~GYFDE 72 (92)
T 4dcz_A 51 GDTRYGYF-----D-ETGDWSWKGYFDE 72 (92)
T ss_dssp TCTTTEEE-----C-TTSCEEESEEECT
T ss_pred CCCccccc-----c-CCCCEEEEeEecC
Confidence 56677888 3 367776 5663
Done!