RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7177
(66 letters)
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 230
Score = 66.9 bits (164), Expect = 2e-15
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 8 GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYK 53
++ GHYTAY + T +W+ F+D V + ++AYILFY+
Sbjct: 185 SLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl
hydrolases. They are intracellular peptidases that
remove ubiquitin molecules from polyubiquinated peptides
by cleavage of isopeptide bonds. They hydrolyse bonds
involving the carboxyl group of the C-terminal Gly
residue of ubiquitin The purpose of the
de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 255
Score = 54.4 bits (131), Expect = 8e-11
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 9 VSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQD-----EDFNNAYILFYK 53
+GHY AY P+ +W+ FND+ V E ++ ++AYILFY+
Sbjct: 206 ADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYILFYE 255
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.
Length = 313
Score = 50.9 bits (122), Expect = 2e-09
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 8 GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFN-NAYILFY 52
+S GHY AY +W F+DE V ++E +AYILFY
Sbjct: 269 SLSGGHYIAYIKKREKNKWVKFDDEKVSVV-TEEEVLRSSAYILFY 313
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 823
Score = 49.1 bits (117), Expect = 9e-09
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 8 GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKR 55
G+S GHYTAY + W+ F+D + E P+D ++AY+LFY+++
Sbjct: 775 GLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRRK 822
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 324
Score = 40.1 bits (94), Expect = 1e-05
Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 23/70 (32%)
Query: 7 KGVSA--GHYTAYTLHPNTKEWHYFNDETVLE-----------QRPQDEDF--------- 44
+GVSA GHY A+ T EW+ FNDE V E + P
Sbjct: 255 QGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHS 314
Query: 45 -NNAYILFYK 53
AY+L YK
Sbjct: 315 SRTAYMLVYK 324
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyse bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 305
Score = 40.0 bits (94), Expect = 2e-05
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 9/56 (16%)
Query: 7 KGVSA--GHYTAYTLHPNTKEWHYFNDETVLEQRPQD-------EDFNNAYILFYK 53
+G SA GHY A+ N +W F+D+ V E +D D++ AYIL YK
Sbjct: 250 QGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIAYILLYK 305
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 304
Score = 36.9 bits (86), Expect = 2e-04
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 17/51 (33%)
Query: 10 SAGHYTAYTLHPNTKEWHYFND--------ETVLEQRPQDEDFNNAYILFY 52
+GHY Y N K W+ +D ETVL Q AYILFY
Sbjct: 262 HSGHYYCYVKSSNGK-WYNMDDSKVSPVSIETVLSQ--------KAYILFY 303
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 311
Score = 36.5 bits (85), Expect = 2e-04
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 9 VSAGHYTAYTLHP--NTKEWHYFNDETVLEQRPQDEDFNNAYILFYK 53
V +GHY A+ +W FNDE V+ + E YI FY+
Sbjct: 265 VHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 334
Score = 35.7 bits (83), Expect = 4e-04
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 24/74 (32%)
Query: 6 SKGVSAGHYTAYTLHPNTK-EWHYFNDETVLEQRPQD---EDF----------------- 44
S GHY +Y + +W+ FND+ V P D E F
Sbjct: 261 SGDAHGGHYYSY-IKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFK 319
Query: 45 --NNAYILFYKKRD 56
NAY+LFY+++
Sbjct: 320 RTTNAYMLFYERKS 333
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification,
protein turnover, chaperones].
Length = 749
Score = 33.5 bits (76), Expect = 0.003
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 9 VSAGHYTA--YTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKK 54
+ AGHY + +W NDE + + +N YI +K+
Sbjct: 701 IHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEVLKDNGYIYLFKR 748
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 328
Score = 32.0 bits (73), Expect = 0.009
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 9 VSAGHYTAYTLHPNTKEWHYFNDETVL---EQRPQDEDFNNAYILFYK 53
+ GHYTAY +W F+D + E+ AY+LFY
Sbjct: 285 LDTGHYTAYCRQ-GDGQWFKFDDAMITRVSEEEVLKS---QAYLLFYH 328
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 332
Score = 31.0 bits (70), Expect = 0.020
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 23/58 (39%)
Query: 9 VSAGHYTAYTLHPNTKEWHYFNDETV--LEQRPQDEDFNNA-----------YILFYK 53
+S+GHYTAY W F+D V E++ DF A Y+LFYK
Sbjct: 285 ISSGHYTAYV------RWLLFDDSEVKVTEEK----DFLEALSPNTSSTSTPYLLFYK 332
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 440
Score = 30.4 bits (69), Expect = 0.035
Identities = 12/52 (23%), Positives = 19/52 (36%)
Query: 2 CVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYK 53
V G + H +T +W D V E PQ + +YI ++
Sbjct: 389 IVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 343
Score = 30.2 bits (68), Expect = 0.039
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 10 SAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFN 45
S+GHY Y W +NDETV P E F
Sbjct: 294 SSGHYWVYIKDFEENVWRKYNDETVTVV-PASEVFL 328
>gnl|CDD|206570 pfam14402, 7TM_transglut, 7 transmembrane helices usually fused
to an inactive transglutaminase. A family of seven
transmembrane helices fused to an inactive
transglutaminase domain. The transglutaminase domain is
predicted to be extracellularly located. Members of
this family are associated in gene neighborhoods with a
pepsin-like peptidase and an ATP-grasp of the
RimK-family. The ATP-grasp is predicted to modify the
7TM protein or a cofactor that interacts with it.
Length = 315
Score = 29.4 bits (67), Expect = 0.079
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 13/53 (24%)
Query: 18 TLHP-----NTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDSDVEVSG 65
TL P N +W FN +T + P++ +L++ R ++S ++V G
Sbjct: 31 TLEPWLEVFNGGKWVLFNPKTGEQGLPEN------LLLWW--RGDESLLDVVG 75
>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 228
Score = 27.9 bits (62), Expect = 0.28
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 11 AGHYTAYTLHPNTKEWHYFNDETVLE 36
AGHY AY + +EW +ND +V E
Sbjct: 178 AGHYWAYIYKQSRQEWEKYNDISVTE 203
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 279
Score = 26.6 bits (59), Expect = 0.74
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 23/63 (36%)
Query: 12 GHYTAYTL----------HPNTKE-----------WHYFNDETVLEQRPQDEDFNN-AYI 49
GHY AY +K W+Y +D V E +E + AY+
Sbjct: 217 GHYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREV-SLEEVLKSEAYL 275
Query: 50 LFY 52
LFY
Sbjct: 276 LFY 278
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 245
Score = 26.3 bits (58), Expect = 0.88
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 9 VSAGHYTAYTLH-PNTKEWHYFNDETVLEQRPQD---EDFNNAYILFY 52
GHY AYT N W Y +D+ + D ++ Y++FY
Sbjct: 197 PYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTNARSSGYLIFY 244
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 327
Score = 26.7 bits (59), Expect = 0.90
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 7/37 (18%)
Query: 24 KEWHYFNDETVLEQRPQDED-------FNNAYILFYK 53
K W+ FND V + + YILFY+
Sbjct: 291 KNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE 327
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 300
Score = 25.3 bits (56), Expect = 2.0
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 12 GHYTAYTLHPNTKEWHYFNDETVLEQRPQD-EDF-------NNAYILFYK 53
GHY + W F+DETV + E+F AY+LFY+
Sbjct: 253 GHYVSIVKS--HGGWLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFYQ 300
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 240
Score = 25.0 bits (55), Expect = 3.0
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 21/64 (32%)
Query: 10 SAGHYTAYTLHP--------------------NTKEWHYFNDETVLEQRPQDEDFN-NAY 48
S+GHY Y P + W +D TV E + +AY
Sbjct: 176 SSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSESEVLEQKSAY 235
Query: 49 ILFY 52
+LFY
Sbjct: 236 MLFY 239
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 24.7 bits (54), Expect = 4.2
Identities = 10/39 (25%), Positives = 13/39 (33%)
Query: 22 NTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDSD 60
T EW N + R + Y FYK D +
Sbjct: 80 TTTEWELLNKTKPIWTRNPKDVTKEEYAAFYKSLTNDWE 118
>gnl|CDD|132445 TIGR03404, bicupin_oxalic, bicupin, oxalate decarboxylase family.
Members of this protein family are defined as bicupins
as they have two copies of the cupin domain (pfam00190).
Two different known activities for members of this
family are oxalate decarboxylase (EC 4.1.1.2) and
oxalate oxidase (EC 1.2.3.4), although the latter
activity has more often been found in distantly related
monocupin (germin) proteins.
Length = 367
Score = 24.6 bits (54), Expect = 4.8
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 20 HPNTKEWHYF 29
HPN EW YF
Sbjct: 263 HPNADEWQYF 272
>gnl|CDD|218946 pfam06226, DUF1007, Protein of unknown function (DUF1007). Family
of conserved bacterial proteins with unknown function.
Length = 212
Score = 23.8 bits (52), Expect = 8.9
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 7/38 (18%)
Query: 22 NTKEWHYF-----NDETVLEQRPQDE--DFNNAYILFY 52
+ E+HYF + + V P D ++ + +
Sbjct: 83 SLAEYHYFTYLKADGKKVKFSEPTDYRLEYKGGQLTLH 120
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.133 0.415
Gapped
Lambda K H
0.267 0.0829 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,347,187
Number of extensions: 236382
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 25
Length of query: 66
Length of database: 10,937,602
Length adjustment: 37
Effective length of query: 29
Effective length of database: 9,296,504
Effective search space: 269598616
Effective search space used: 269598616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.0 bits)