RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7177
         (66 letters)



>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase
           8 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 348

 Score = 55.1 bits (131), Expect = 2e-11
 Identities = 17/47 (36%), Positives = 23/47 (48%)

Query: 8   GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKK 54
           G+  GHYTAY  +   + W  F+D  V +        + AYILFY  
Sbjct: 301 GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTS 347


>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase
           2, USP2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 336

 Score = 54.4 bits (129), Expect = 3e-11
 Identities = 21/48 (43%), Positives = 26/48 (54%)

Query: 6   SKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYK 53
           S     GHYTAY   P T EWH FND +V          ++AY+LFY+
Sbjct: 287 SGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYE 334


>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase
           14 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 383

 Score = 50.1 bits (118), Expect = 9e-10
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 8/56 (14%)

Query: 7   KGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQD-------EDFNNAYILFYKKR 55
           +  S+GHY ++       EW  F+D+ V    P+D        D++ AY+L Y  R
Sbjct: 329 RSSSSGHYVSWVKRKQ-DEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPR 383


>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 397

 Score = 49.0 bits (115), Expect = 2e-09
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 8/58 (13%)

Query: 7   KGVSAGHYTAYTLHP-NTKEWHYFNDETVLEQRPQD-------EDFNNAYILFYKKRD 56
               +GHY A+     +  +W+ FND+ V     +         + ++A IL YK   
Sbjct: 339 ANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGFG 396


>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7,
           HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 347

 Score = 45.9 bits (107), Expect = 3e-08
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 15/67 (22%)

Query: 10  SAGHYTAYTLHPNTKEWHYFNDETVLEQRPQD---------------EDFNNAYILFYKK 54
             GHY  Y       +W  F+D+ V     ++                   NAY+L Y +
Sbjct: 254 HGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIR 313

Query: 55  RDEDSDV 61
             + S+V
Sbjct: 314 ESKLSEV 320


>d2ibaa2 d.96.1.4 (A:137-295) Urate oxidase (uricase) {Aspergillus
          flavus [TaxId: 5059]}
          Length = 159

 Score = 22.1 bits (47), Expect = 8.3
 Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 10/42 (23%)

Query: 17 YTLHPNTKE----------WHYFNDETVLEQRPQDEDFNNAY 48
          YT    T +          W + N   + E R     F+  +
Sbjct: 31 YTTLKETWDRILSTDVDATWQWKNFSGLQEVRSHVPKFDATW 72


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.133    0.415 

Gapped
Lambda     K      H
   0.267   0.0386    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 259,408
Number of extensions: 9841
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 9
Length of query: 66
Length of database: 2,407,596
Length adjustment: 35
Effective length of query: 31
Effective length of database: 1,927,046
Effective search space: 59738426
Effective search space used: 59738426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.8 bits)