Query psy7178
Match_columns 154
No_of_seqs 182 out of 1188
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 20:11:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5560 UBP12 Ubiquitin C-term 99.8 2.2E-21 4.7E-26 162.3 6.1 92 63-154 262-356 (823)
2 cd02658 Peptidase_C19B A subfa 99.8 1.4E-20 3.1E-25 149.2 7.6 87 68-154 1-101 (311)
3 cd02669 Peptidase_C19M A subfa 99.8 1.1E-19 2.4E-24 151.0 10.0 93 60-154 113-208 (440)
4 cd02660 Peptidase_C19D A subfa 99.8 2.4E-19 5.1E-24 143.0 8.3 88 67-154 1-89 (328)
5 cd02657 Peptidase_C19A A subfa 99.8 1.6E-18 3.4E-23 137.1 9.0 85 68-154 1-91 (305)
6 KOG0944|consensus 99.8 8.9E-19 1.9E-23 147.4 7.4 104 51-154 292-405 (763)
7 cd02666 Peptidase_C19J A subfa 99.7 3.1E-18 6.7E-23 138.1 7.3 77 66-142 1-95 (343)
8 cd02671 Peptidase_C19O A subfa 99.7 5.2E-18 1.1E-22 136.4 8.4 90 59-154 17-106 (332)
9 cd02661 Peptidase_C19E A subfa 99.7 5.4E-18 1.2E-22 133.2 7.8 87 66-154 1-87 (304)
10 PF00443 UCH: Ubiquitin carbox 99.7 5.3E-18 1.2E-22 129.5 6.6 89 66-154 1-94 (269)
11 KOG1865|consensus 99.7 1.8E-17 3.9E-22 137.4 9.8 91 61-153 103-193 (545)
12 cd02668 Peptidase_C19L A subfa 99.7 1.6E-17 3.4E-22 132.8 8.2 82 68-154 1-89 (324)
13 KOG1873|consensus 99.7 1.4E-17 3.1E-22 141.5 7.8 94 60-154 199-307 (877)
14 cd02663 Peptidase_C19G A subfa 99.7 1.1E-16 2.3E-21 126.8 6.8 64 68-154 1-66 (300)
15 cd02664 Peptidase_C19H A subfa 99.7 2.2E-16 4.7E-21 126.6 8.1 81 68-154 1-82 (327)
16 cd02659 peptidase_C19C A subfa 99.6 2.6E-16 5.7E-21 125.8 6.3 87 65-154 1-87 (334)
17 cd02667 Peptidase_C19K A subfa 99.6 7.9E-16 1.7E-20 120.8 4.9 30 68-97 1-30 (279)
18 COG5533 UBP5 Ubiquitin C-termi 99.6 1.7E-15 3.7E-20 118.4 6.3 92 63-154 68-163 (415)
19 KOG1868|consensus 99.5 3.2E-14 6.8E-19 122.0 6.6 94 61-154 296-392 (653)
20 COG5207 UBP14 Isopeptidase T [ 99.4 1.7E-13 3.7E-18 113.2 5.2 92 63-154 300-395 (749)
21 KOG1867|consensus 99.3 1.6E-12 3.5E-17 109.1 6.1 93 61-154 156-249 (492)
22 KOG1863|consensus 99.3 2.7E-12 5.8E-17 116.6 6.1 89 62-154 165-254 (1093)
23 KOG1870|consensus 99.3 3.2E-12 7E-17 113.5 4.9 95 60-154 240-337 (842)
24 cd02662 Peptidase_C19F A subfa 99.2 1.2E-11 2.6E-16 95.2 4.7 32 68-99 1-32 (240)
25 COG5077 Ubiquitin carboxyl-ter 99.1 5.4E-11 1.2E-15 102.3 5.9 76 60-140 187-262 (1089)
26 KOG1872|consensus 98.9 3.4E-10 7.4E-15 92.9 1.8 85 64-150 103-188 (473)
27 PF13423 UCH_1: Ubiquitin carb 98.8 8.9E-09 1.9E-13 81.4 7.0 72 67-144 1-73 (295)
28 KOG2026|consensus 98.6 6.1E-08 1.3E-12 78.2 6.2 89 60-153 128-219 (442)
29 cd02672 Peptidase_C19P A subfa 98.6 4.9E-08 1.1E-12 76.6 4.5 57 63-124 12-68 (268)
30 KOG1866|consensus 98.5 1.7E-07 3.7E-12 80.9 4.4 83 61-143 90-172 (944)
31 cd02674 Peptidase_C19R A subfa 98.3 5.1E-07 1.1E-11 68.3 4.0 20 68-87 1-20 (230)
32 KOG1871|consensus 98.2 1.2E-06 2.7E-11 70.9 3.7 64 61-125 23-86 (420)
33 cd02257 Peptidase_C19 Peptidas 98.2 1.6E-06 3.5E-11 64.8 4.1 20 68-87 1-20 (255)
34 KOG1864|consensus 97.4 0.00014 3.1E-09 62.7 4.2 29 69-97 34-62 (587)
35 cd02665 Peptidase_C19I A subfa 97.4 0.00013 2.9E-09 56.0 2.9 22 68-89 1-22 (228)
36 cd02673 Peptidase_C19Q A subfa 96.8 0.0011 2.5E-08 51.3 3.4 33 69-101 2-34 (245)
37 KOG1275|consensus 96.7 0.0062 1.3E-07 54.5 7.0 74 64-144 497-570 (1118)
38 KOG4598|consensus 95.8 0.013 2.9E-07 51.4 4.3 38 61-98 82-119 (1203)
39 PF05408 Peptidase_C28: Foot-a 94.4 0.026 5.7E-07 41.7 1.9 25 63-87 30-54 (193)
40 KOG1864|consensus 86.0 0.84 1.8E-05 39.9 3.4 92 62-154 228-323 (587)
41 cd02670 Peptidase_C19N A subfa 81.4 0.87 1.9E-05 35.3 1.5 20 68-87 1-21 (241)
42 PF13405 EF-hand_6: EF-hand do 50.5 31 0.00068 17.1 3.1 27 117-143 2-28 (31)
43 PF00036 EF-hand_1: EF hand; 39.3 52 0.0011 16.4 2.8 27 117-143 2-28 (29)
44 KOG1868|consensus 32.9 14 0.0003 32.9 -0.1 15 69-83 205-219 (653)
45 smart00054 EFh EF-hand, calciu 30.1 60 0.0013 14.3 2.6 27 117-143 2-28 (29)
46 PF15444 TMEM247: Transmembran 29.5 1E+02 0.0022 23.0 3.9 40 76-126 179-218 (218)
47 PF15499 Peptidase_C98: Ubiqui 25.7 1.4E+02 0.0031 23.6 4.3 29 70-98 6-34 (275)
48 cd01857 HSR1_MMR1 HSR1/MMR1. 24.9 40 0.00087 23.2 1.1 20 63-82 85-104 (141)
49 smart00814 Alpha_TIF Alpha tra 24.1 28 0.00061 28.4 0.2 13 5-17 56-70 (356)
50 PF14855 PapJ: Pilus-assembly 23.8 31 0.00066 25.3 0.3 13 72-84 13-25 (187)
51 PF02232 Alpha_TIF: Alpha tran 22.0 30 0.00065 28.2 0.0 13 5-17 40-54 (345)
52 PF12295 Symplekin_C: Sympleki 21.1 1.3E+02 0.0028 22.2 3.2 24 74-97 109-132 (183)
53 KOG1867|consensus 20.9 22 0.00048 30.5 -1.0 30 63-92 74-103 (492)
No 1
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.2e-21 Score=162.28 Aligned_cols=92 Identities=34% Similarity=0.690 Sum_probs=85.5
Q ss_pred CCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhcc---CCCchhHHHHHHHHHHHHHHcCCCCccChHHHHH
Q psy7178 63 QRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLK---SSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQ 139 (154)
Q Consensus 63 ~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~---~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~ 139 (154)
..|.+||+|+||||||||.||||.|+++||+||+...+....+ +.+.++.++.+++.|++.++.++..++.|..|+.
T Consensus 262 e~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~ 341 (823)
T COG5560 262 EAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKK 341 (823)
T ss_pred hccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHHH
Confidence 3588999999999999999999999999999999988876654 4667889999999999999999999999999999
Q ss_pred HHHhhCCCCCCCCCC
Q psy7178 140 ILGVHYPQFKDYRQV 154 (154)
Q Consensus 140 ~l~~~~~~F~~~~Qq 154 (154)
.|++.+..|.|+.||
T Consensus 342 tIG~fn~~fsGy~QQ 356 (823)
T COG5560 342 TIGSFNEEFSGYDQQ 356 (823)
T ss_pred HHhhhHHHhcCccch
Confidence 999999999999998
No 2
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.82 E-value=1.4e-20 Score=149.21 Aligned_cols=87 Identities=28% Similarity=0.486 Sum_probs=72.7
Q ss_pred ccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCC--------------CccC
Q psy7178 68 GLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQY--------------SIVH 133 (154)
Q Consensus 68 GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~--------------~~i~ 133 (154)
||.|+||||||||+||||+|+|+|+++|+...............+++++|++|+..|+.++. ..++
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 89999999999999999999999999998744332222222346899999999999987542 3689
Q ss_pred hHHHHHHHHhhCCCCCCCCCC
Q psy7178 134 PSDFKQILGVHYPQFKDYRQV 154 (154)
Q Consensus 134 P~~~~~~l~~~~~~F~~~~Qq 154 (154)
|..|+.++++.+|.|.++.||
T Consensus 81 p~~~~~~l~~~~~~f~~~~Qq 101 (311)
T cd02658 81 PSMFKALIGKGHPEFSTMRQQ 101 (311)
T ss_pred cHHHHHHHhccChhhcccccc
Confidence 999999999999999999997
No 3
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.81 E-value=1.1e-19 Score=150.97 Aligned_cols=93 Identities=23% Similarity=0.337 Sum_probs=78.7
Q ss_pred CccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCC--CCccChHHH
Q psy7178 60 NCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQ--YSIVHPSDF 137 (154)
Q Consensus 60 ~~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~--~~~i~P~~~ 137 (154)
..+.+|++||.|+||||||||+||+|+|+|+||++|+...+.... .....+++++|+.+++.+|+.. +..++|.+|
T Consensus 113 ~~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~--~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~f 190 (440)
T cd02669 113 KPYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENI--KDRKSELVKRLSELIRKIWNPRNFKGHVSPHEL 190 (440)
T ss_pred CCccCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccc--cCCCcHHHHHHHHHHHHHhccccCCCccCHHHH
Confidence 466789999999999999999999999999999999986654321 1123689999999999999864 578999999
Q ss_pred HHHHHhhC-CCCCCCCCC
Q psy7178 138 KQILGVHY-PQFKDYRQV 154 (154)
Q Consensus 138 ~~~l~~~~-~~F~~~~Qq 154 (154)
+..++... +.|.++.||
T Consensus 191 l~~l~~~~~~~f~~~~Qq 208 (440)
T cd02669 191 LQAVSKVSKKKFSITEQS 208 (440)
T ss_pred HHHHHhhcccccCCcccC
Confidence 99998864 689999997
No 4
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.79 E-value=2.4e-19 Score=143.02 Aligned_cols=88 Identities=28% Similarity=0.383 Sum_probs=74.2
Q ss_pred cccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHH-cCCCCccChHHHHHHHHhhC
Q psy7178 67 CGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMW-SGQYSIVHPSDFKQILGVHY 145 (154)
Q Consensus 67 ~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~-~~~~~~i~P~~~~~~l~~~~ 145 (154)
+||.|+||||||||+||+|+|+|+|+++++...+...........++.++|++|+..|+ ++....+.|..|+..+++..
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~ 80 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWKHS 80 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhc
Confidence 69999999999999999999999999999987654311111234689999999999995 44567899999999999999
Q ss_pred CCCCCCCCC
Q psy7178 146 PQFKDYRQV 154 (154)
Q Consensus 146 ~~F~~~~Qq 154 (154)
+.|.++.||
T Consensus 81 ~~f~~~~Qq 89 (328)
T cd02660 81 RNLAGYSQQ 89 (328)
T ss_pred hhhcccccc
Confidence 999999887
No 5
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.77 E-value=1.6e-18 Score=137.11 Aligned_cols=85 Identities=31% Similarity=0.518 Sum_probs=71.5
Q ss_pred ccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCCCccChHHHHHHHHhhCCC
Q psy7178 68 GLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQ 147 (154)
Q Consensus 68 GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~~l~~~~~~ 147 (154)
||.|+||||||||+||+|+|+|+|+++++....... .......+++++|++|+..|+.+. ..++|.+|+..+++..+.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~l~~L~~~l~~~~-~~i~p~~~~~~l~~~~~~ 78 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARR-GANQSSDNLTNALRDLFDTMDKKQ-EPVPPIEFLQLLRMAFPQ 78 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhcccccc-ccccchhHHHHHHHHHHHHHHhCC-CcCCcHHHHHHHHHHCcC
Confidence 899999999999999999999999999998665421 111234799999999999999876 489999999999999999
Q ss_pred CC------CCCCC
Q psy7178 148 FK------DYRQV 154 (154)
Q Consensus 148 F~------~~~Qq 154 (154)
|. +++||
T Consensus 79 f~~~~~~~~~~Qq 91 (305)
T cd02657 79 FAEKQNQGGYAQQ 91 (305)
T ss_pred cccccCCCCcccc
Confidence 95 34676
No 6
>KOG0944|consensus
Probab=99.76 E-value=8.9e-19 Score=147.35 Aligned_cols=104 Identities=26% Similarity=0.427 Sum_probs=88.4
Q ss_pred cccCCCCcCCccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCCC
Q psy7178 51 ISEDNDVSDNCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYS 130 (154)
Q Consensus 51 ~~~~~~~~~~~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 130 (154)
+.|++...++..++|++||.|+||+||||||+|+|+.++.|...+......-.+......+.+-++|.+|++.|.+++++
T Consensus 292 ~~esg~~l~p~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys 371 (763)
T KOG0944|consen 292 LEESGAPLEPLFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYS 371 (763)
T ss_pred eccCCCccccccCCCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCccc
Confidence 55677777889999999999999999999999999999999988877632222233345689999999999999988543
Q ss_pred ----------ccChHHHHHHHHhhCCCCCCCCCC
Q psy7178 131 ----------IVHPSDFKQILGVHYPQFKDYRQV 154 (154)
Q Consensus 131 ----------~i~P~~~~~~l~~~~~~F~~~~Qq 154 (154)
-|+|..|+.++++-+|.|+..+||
T Consensus 372 ~p~~~~~~qngIsP~mFK~~igknHpeFst~~QQ 405 (763)
T KOG0944|consen 372 KPLMDPSNQNGISPLMFKALIGKNHPEFSTNRQQ 405 (763)
T ss_pred CccCCccccCCcCHHHHHHHHcCCCccccchhhh
Confidence 489999999999999999999998
No 7
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.74 E-value=3.1e-18 Score=138.14 Aligned_cols=77 Identities=23% Similarity=0.360 Sum_probs=62.1
Q ss_pred ccccccCCcchHHHHHHHHHhcchHHHHHHhccccchh-------c-c----CC------CchhHHHHHHHHHHHHHHcC
Q psy7178 66 VCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDS-------L-K----SS------SACSSLVDEFALLVRKMWSG 127 (154)
Q Consensus 66 ~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~-------~-~----~~------~~~~~l~~~l~~l~~~~~~~ 127 (154)
++||.|+||||||||+||+|+++|+||++++....... . . .. .....++.+|+.||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 58999999999999999999999999999998652211 0 0 00 01237999999999999998
Q ss_pred CCCccChHHHHHHHH
Q psy7178 128 QYSIVHPSDFKQILG 142 (154)
Q Consensus 128 ~~~~i~P~~~~~~l~ 142 (154)
...++.|..++..++
T Consensus 81 ~~~~v~P~~~l~~l~ 95 (343)
T cd02666 81 NTRSVTPSKELAYLA 95 (343)
T ss_pred CCCccCcHHHHHhcc
Confidence 889999999987654
No 8
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.74 E-value=5.2e-18 Score=136.39 Aligned_cols=90 Identities=20% Similarity=0.254 Sum_probs=67.8
Q ss_pred CCccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCCCccChHHHH
Q psy7178 59 DNCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFK 138 (154)
Q Consensus 59 ~~~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~ 138 (154)
++....+++||.|+||||||||+||+|+|+|+|++.+++...... .......+..++..++......+.|..|+
T Consensus 17 ~~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~------~~~~~q~~~~~l~~~~~~~~~~~~P~~~~ 90 (332)
T cd02671 17 KRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLIS------SVEQLQSSFLLNPEKYNDELANQAPRRLL 90 (332)
T ss_pred ccccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhcccC------cHHHHHHHHHHHHHHHhhcccccCHHHHH
Confidence 445678999999999999999999999999999999876531110 01112223334455665544567899999
Q ss_pred HHHHhhCCCCCCCCCC
Q psy7178 139 QILGVHYPQFKDYRQV 154 (154)
Q Consensus 139 ~~l~~~~~~F~~~~Qq 154 (154)
+.+++.+|.|.++.||
T Consensus 91 ~~l~~~~~~f~~~~QQ 106 (332)
T cd02671 91 NALREVNPMYEGYLQH 106 (332)
T ss_pred HHHHHhccccCCcccc
Confidence 9999999999999998
No 9
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.74 E-value=5.4e-18 Score=133.23 Aligned_cols=87 Identities=23% Similarity=0.313 Sum_probs=75.5
Q ss_pred ccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCCCccChHHHHHHHHhhC
Q psy7178 66 VCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQILGVHY 145 (154)
Q Consensus 66 ~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~~l~~~~ 145 (154)
++||.|+||||||||+||+|+|+|+|++++++..+..... ....++.++|+.++..++..+...+.|..|.+.+.+..
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~~~ 78 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCC--NEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQIS 78 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhcc--CCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHHHH
Confidence 4899999999999999999999999999998765543222 22368999999999999987778899999999999999
Q ss_pred CCCCCCCCC
Q psy7178 146 PQFKDYRQV 154 (154)
Q Consensus 146 ~~F~~~~Qq 154 (154)
+.|..+.||
T Consensus 79 ~~f~~~~qq 87 (304)
T cd02661 79 KHFRIGRQE 87 (304)
T ss_pred HhhcCcchh
Confidence 999999987
No 10
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=99.73 E-value=5.3e-18 Score=129.47 Aligned_cols=89 Identities=28% Similarity=0.520 Sum_probs=74.2
Q ss_pred ccccccCCcchHHHHHHHHHhcchHHHHHHhccccchh---ccCCCchhHHHHHHHHHHHHHHcC--CCCccChHHHHHH
Q psy7178 66 VCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDS---LKSSSACSSLVDEFALLVRKMWSG--QYSIVHPSDFKQI 140 (154)
Q Consensus 66 ~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~---~~~~~~~~~l~~~l~~l~~~~~~~--~~~~i~P~~~~~~ 140 (154)
++||.|.||||||||+||+|+++|+|+++++....... .........+.++|+.++..|+.. ....+.|..|+..
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 48999999999999999999999999999998632221 122223468999999999999988 6788999999999
Q ss_pred HHhhCCCCCCCCCC
Q psy7178 141 LGVHYPQFKDYRQV 154 (154)
Q Consensus 141 l~~~~~~F~~~~Qq 154 (154)
++...+.|.++.||
T Consensus 81 l~~~~~~~~~~~qq 94 (269)
T PF00443_consen 81 LSSINPSFSNGEQQ 94 (269)
T ss_dssp HHHHCGGGGSSSTE
T ss_pred cccccccccccccc
Confidence 99999999998886
No 11
>KOG1865|consensus
Probab=99.73 E-value=1.8e-17 Score=137.44 Aligned_cols=91 Identities=24% Similarity=0.318 Sum_probs=81.5
Q ss_pred ccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCCCccChHHHHHH
Q psy7178 61 CAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQI 140 (154)
Q Consensus 61 ~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~~ 140 (154)
......+||.|+|||||+|||||||.++|+|.+||++..+...+... ..|++|+|+..+..-......+++|..|+..
T Consensus 103 ~~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~--~~C~lc~~q~hi~~A~~~~g~pisP~~i~s~ 180 (545)
T KOG1865|consen 103 RPAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRA--KFCMLCTFQAHITRALHNPGHPISPSQILSN 180 (545)
T ss_pred ccccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhcccc--CeeeehHHHHHHHHHhcCCCCccChHHHHHh
Confidence 45567899999999999999999999999999999999998876532 4899999999887777776669999999999
Q ss_pred HHhhCCCCCCCCC
Q psy7178 141 LGVHYPQFKDYRQ 153 (154)
Q Consensus 141 l~~~~~~F~~~~Q 153 (154)
|..+..+|+.++|
T Consensus 181 L~~I~~~f~~grQ 193 (545)
T KOG1865|consen 181 LRNISAHFGRGRQ 193 (545)
T ss_pred hhhhcccccCCch
Confidence 9999999999988
No 12
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.72 E-value=1.6e-17 Score=132.85 Aligned_cols=82 Identities=23% Similarity=0.426 Sum_probs=67.2
Q ss_pred ccccCCcchHHHHHHHHHhcchHHHHHHhccccchhcc-------CCCchhHHHHHHHHHHHHHHcCCCCccChHHHHHH
Q psy7178 68 GLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLK-------SSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQI 140 (154)
Q Consensus 68 GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~-------~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~~ 140 (154)
||.|+||||||||+||+|+|+|+|+++++......... ......+++++|+.||..|+.+...+++|..|++.
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 89999999999999999999999999998765432110 00123589999999999999998899999999998
Q ss_pred HHhhCCCCCCCCCC
Q psy7178 141 LGVHYPQFKDYRQV 154 (154)
Q Consensus 141 l~~~~~~F~~~~Qq 154 (154)
++ |..++||
T Consensus 81 l~-----~~~~~Qq 89 (324)
T cd02668 81 LG-----LDTGQQQ 89 (324)
T ss_pred hC-----CCCcccc
Confidence 84 6667776
No 13
>KOG1873|consensus
Probab=99.72 E-value=1.4e-17 Score=141.47 Aligned_cols=94 Identities=29% Similarity=0.375 Sum_probs=79.8
Q ss_pred CccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhc---------------cCCCchhHHHHHHHHHHHHH
Q psy7178 60 NCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSL---------------KSSSACSSLVDEFALLVRKM 124 (154)
Q Consensus 60 ~~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~---------------~~~~~~~~l~~~l~~l~~~~ 124 (154)
.......+||.|||||||||||||+|..++.|++.|......... ......+.++.+|+. +..|
T Consensus 199 ~~~~~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~-~~e~ 277 (877)
T KOG1873|consen 199 KRRGYIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALAN-LLEM 277 (877)
T ss_pred ccccccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHh-hhhh
Confidence 356677899999999999999999999999999999987765421 012345789999998 6777
Q ss_pred HcCCCCccChHHHHHHHHhhCCCCCCCCCC
Q psy7178 125 WSGQYSIVHPSDFKQILGVHYPQFKDYRQV 154 (154)
Q Consensus 125 ~~~~~~~i~P~~~~~~l~~~~~~F~~~~Qq 154 (154)
..+..++++|+.|+..++.++|+|.|++||
T Consensus 278 ~e~~ksv~~Pr~lF~~~C~k~pqF~g~~Qh 307 (877)
T KOG1873|consen 278 SETTKSVITPRTLFGQFCSKAPQFRGYDQH 307 (877)
T ss_pred hhccCCccCHHHHHHHHHHhCCcccccccc
Confidence 788789999999999999999999999997
No 14
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.67 E-value=1.1e-16 Score=126.85 Aligned_cols=64 Identities=25% Similarity=0.448 Sum_probs=58.8
Q ss_pred ccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCC--CCccChHHHHHHHHhhC
Q psy7178 68 GLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQ--YSIVHPSDFKQILGVHY 145 (154)
Q Consensus 68 GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~--~~~i~P~~~~~~l~~~~ 145 (154)
||.|+||||||||+||+|+| .+++++|+.||..||... ..+++|..|++.+++.+
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~-----------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~ 57 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF-----------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKREN 57 (300)
T ss_pred CccCCCcceehhHHHHHhhh-----------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhc
Confidence 89999999999999999987 468899999999999763 45799999999999999
Q ss_pred CCCCCCCCC
Q psy7178 146 PQFKDYRQV 154 (154)
Q Consensus 146 ~~F~~~~Qq 154 (154)
+.|.++.||
T Consensus 58 ~~f~~~~Qq 66 (300)
T cd02663 58 ELFDNYMHQ 66 (300)
T ss_pred CCCCCCccc
Confidence 999999998
No 15
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.66 E-value=2.2e-16 Score=126.59 Aligned_cols=81 Identities=27% Similarity=0.338 Sum_probs=65.6
Q ss_pred ccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCCCccChHH-HHHHHHhhCC
Q psy7178 68 GLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSD-FKQILGVHYP 146 (154)
Q Consensus 68 GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~-~~~~l~~~~~ 146 (154)
||.|+||||||||+||+|+++|+||+++++....... ....+..+|+.++..|......++.|.. |+..++ .+
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~~----~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~--~~ 74 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLG----DSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR--PP 74 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccccC----CcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc--cc
Confidence 8999999999999999999999999999987654211 1256888999999888876666777776 776554 57
Q ss_pred CCCCCCCC
Q psy7178 147 QFKDYRQV 154 (154)
Q Consensus 147 ~F~~~~Qq 154 (154)
.|..+.||
T Consensus 75 ~f~~~~Qq 82 (327)
T cd02664 75 WFTPGSQQ 82 (327)
T ss_pred ccCCCCcC
Confidence 89988887
No 16
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.64 E-value=2.6e-16 Score=125.76 Aligned_cols=87 Identities=15% Similarity=0.199 Sum_probs=63.5
Q ss_pred cccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCCCccChHHHHHHHHhh
Q psy7178 65 GVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQILGVH 144 (154)
Q Consensus 65 ~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~~l~~~ 144 (154)
|++||.|+||||||||+||+|+++|+|+++++........ ....++.++|+.||..|+.+....+.|..+.......
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~~---~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~ 77 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDD---DDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRSFG 77 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcccC---cccccHHHHHHHHHHHHHhCCccccCcchhheeccCC
Confidence 6799999999999999999999999999999986321111 1236799999999999998765555655544121222
Q ss_pred CCCCCCCCCC
Q psy7178 145 YPQFKDYRQV 154 (154)
Q Consensus 145 ~~~F~~~~Qq 154 (154)
...|..+.||
T Consensus 78 ~~~~~~~~Qq 87 (334)
T cd02659 78 WDSLNTFEQH 87 (334)
T ss_pred CCCCCcccch
Confidence 3456667665
No 17
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.60 E-value=7.9e-16 Score=120.77 Aligned_cols=30 Identities=50% Similarity=0.816 Sum_probs=29.2
Q ss_pred ccccCCcchHHHHHHHHHhcchHHHHHHhc
Q psy7178 68 GLRNLGNTCFMSAGIQSLVAASALVEYFTN 97 (154)
Q Consensus 68 GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~ 97 (154)
||.|+||||||||+||+|+|+|+|+++++.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~ 30 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE 30 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH
Confidence 899999999999999999999999999987
No 18
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.7e-15 Score=118.44 Aligned_cols=92 Identities=22% Similarity=0.277 Sum_probs=73.2
Q ss_pred CCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhc---cCCCchh-HHHHHHHHHHHHHHcCCCCccChHHHH
Q psy7178 63 QRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSL---KSSSACS-SLVDEFALLVRKMWSGQYSIVHPSDFK 138 (154)
Q Consensus 63 ~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~---~~~~~~~-~l~~~l~~l~~~~~~~~~~~i~P~~~~ 138 (154)
...+.||+|.|||||||++||||+.+.++...|....+.... .+.+.++ .....|..|...+..-....|+|..|+
T Consensus 68 n~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF~ 147 (415)
T COG5533 68 NLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNFI 147 (415)
T ss_pred ccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHHH
Confidence 456799999999999999999999999999977765555333 3334445 555666667777766555679999999
Q ss_pred HHHHhhCCCCCCCCCC
Q psy7178 139 QILGVHYPQFKDYRQV 154 (154)
Q Consensus 139 ~~l~~~~~~F~~~~Qq 154 (154)
+.++.++++|.+.-||
T Consensus 148 ~i~~~~n~~fs~dmQq 163 (415)
T COG5533 148 DILSGRNKLFSGDMQQ 163 (415)
T ss_pred HHHccccccccccchh
Confidence 9999999999998886
No 19
>KOG1868|consensus
Probab=99.50 E-value=3.2e-14 Score=122.02 Aligned_cols=94 Identities=32% Similarity=0.476 Sum_probs=80.2
Q ss_pred ccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhcc--CCCchhHHHHHHHHHHHHHHcC-CCCccChHHH
Q psy7178 61 CAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLK--SSSACSSLVDEFALLVRKMWSG-QYSIVHPSDF 137 (154)
Q Consensus 61 ~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~--~~~~~~~l~~~l~~l~~~~~~~-~~~~i~P~~~ 137 (154)
....+.+||.|+|||||||++||||+.|+.|++.++...+....+ .......+..++..++..+|.+ ....+.|+.|
T Consensus 296 ~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~f 375 (653)
T KOG1868|consen 296 TDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRRF 375 (653)
T ss_pred ccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHHH
Confidence 456789999999999999999999999999998888887766554 2233468888999988888876 5677999999
Q ss_pred HHHHHhhCCCCCCCCCC
Q psy7178 138 KQILGVHYPQFKDYRQV 154 (154)
Q Consensus 138 ~~~l~~~~~~F~~~~Qq 154 (154)
+..+.++.+.|.++.||
T Consensus 376 ~~~~~~y~~~~~~~~Qq 392 (653)
T KOG1868|consen 376 IRVLKRYSPNFSGYSQQ 392 (653)
T ss_pred HHHHhhccccccccccc
Confidence 99999999999998776
No 20
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.7e-13 Score=113.18 Aligned_cols=92 Identities=29% Similarity=0.399 Sum_probs=73.6
Q ss_pred CCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCC----CCccChHHHH
Q psy7178 63 QRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQ----YSIVHPSDFK 138 (154)
Q Consensus 63 ~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~----~~~i~P~~~~ 138 (154)
+...+||.|+||+||+|||+|+|+....+...+....+...........++.|++-+|+..|.... ..-++|..|+
T Consensus 300 ps~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk 379 (749)
T COG5207 300 PSPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFK 379 (749)
T ss_pred CCCccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCCCccccCCcChhhHH
Confidence 334899999999999999999999988877666554333222222234799999999999998754 2348999999
Q ss_pred HHHHhhCCCCCCCCCC
Q psy7178 139 QILGVHYPQFKDYRQV 154 (154)
Q Consensus 139 ~~l~~~~~~F~~~~Qq 154 (154)
.++++-++.|+.++||
T Consensus 380 ~~igq~h~eFg~~~QQ 395 (749)
T COG5207 380 MLIGQDHPEFGKFAQQ 395 (749)
T ss_pred HHHcCCchhhhhhhhh
Confidence 9999999999999998
No 21
>KOG1867|consensus
Probab=99.34 E-value=1.6e-12 Score=109.09 Aligned_cols=93 Identities=30% Similarity=0.456 Sum_probs=82.2
Q ss_pred ccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCC-CCccChHHHHH
Q psy7178 61 CAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQ-YSIVHPSDFKQ 139 (154)
Q Consensus 61 ~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~i~P~~~~~ 139 (154)
....++.||+|+|+|||||++||+|.|.+..++..+...+...... ....++.+++.++++.+|++. ..++.|..+++
T Consensus 156 ~~~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~-~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~ 234 (492)
T KOG1867|consen 156 TTALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSS-SGSSCLVCDLDRLFQALYSGHNRTPYSPFELLN 234 (492)
T ss_pred eeeecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCC-CCCcchhhhhhhhhhHhhcCCCCCCcChHHHHH
Confidence 4667899999999999999999999999999998888877732221 225799999999999999998 89999999999
Q ss_pred HHHhhCCCCCCCCCC
Q psy7178 140 ILGVHYPQFKDYRQV 154 (154)
Q Consensus 140 ~l~~~~~~F~~~~Qq 154 (154)
.+++..|+|.|+.||
T Consensus 235 ~~~k~~~~~~g~~Qq 249 (492)
T KOG1867|consen 235 LVWKHSPNLAGYEQQ 249 (492)
T ss_pred HHHHhCccccccccc
Confidence 999999999999997
No 22
>KOG1863|consensus
Probab=99.31 E-value=2.7e-12 Score=116.59 Aligned_cols=89 Identities=19% Similarity=0.258 Sum_probs=71.8
Q ss_pred cCCcc-cccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCCCccChHHHHHH
Q psy7178 62 AQRGV-CGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQI 140 (154)
Q Consensus 62 ~~~~~-~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~~ 140 (154)
...+. +||.|+|+||||||+||+|+.++.||+.+.+........ .....+..+|+.||..|..++.++|.+.+|...
T Consensus 165 ~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~~--~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~~~ 242 (1093)
T KOG1863|consen 165 RLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTGHE--DPRRSIPLALQRLFYELQMSKRKYVDTSELTKS 242 (1093)
T ss_pred hcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCCcc--cccchHHHHHHHHHHHHhhcCCCCcCchhhhhh
Confidence 34455 999999999999999999999999999999987421111 223569999999999999999889999999999
Q ss_pred HHhhCCCCCCCCCC
Q psy7178 141 LGVHYPQFKDYRQV 154 (154)
Q Consensus 141 l~~~~~~F~~~~Qq 154 (154)
+.... ..++.||
T Consensus 243 ~~~~~--~~~~~Qq 254 (1093)
T KOG1863|consen 243 LGWDS--NDSFEQQ 254 (1093)
T ss_pred hhccc--ccHHhhh
Confidence 87765 4444444
No 23
>KOG1870|consensus
Probab=99.28 E-value=3.2e-12 Score=113.47 Aligned_cols=95 Identities=34% Similarity=0.651 Sum_probs=84.6
Q ss_pred CccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhc---cCCCchhHHHHHHHHHHHHHHcCCCCccChHH
Q psy7178 60 NCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSL---KSSSACSSLVDEFALLVRKMWSGQYSIVHPSD 136 (154)
Q Consensus 60 ~~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~---~~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~ 136 (154)
....+|.+||.|+|||||||+.+|||.+.+.++++++...+.... ++.+..+.+...+..++..+|.+....+.|..
T Consensus 240 ~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~~ 319 (842)
T KOG1870|consen 240 SPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPTS 319 (842)
T ss_pred CCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCccccCchh
Confidence 345689999999999999999999999999999999987776632 34556688999999999999999877899999
Q ss_pred HHHHHHhhCCCCCCCCCC
Q psy7178 137 FKQILGVHYPQFKDYRQV 154 (154)
Q Consensus 137 ~~~~l~~~~~~F~~~~Qq 154 (154)
+...+..++++|.|+.||
T Consensus 320 ~~~~~~~~a~~~~g~~q~ 337 (842)
T KOG1870|consen 320 FRTSLASFASEFSGYGQQ 337 (842)
T ss_pred hhhhhhhccccccCcccc
Confidence 999999999999999987
No 24
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.22 E-value=1.2e-11 Score=95.22 Aligned_cols=32 Identities=47% Similarity=0.821 Sum_probs=30.7
Q ss_pred ccccCCcchHHHHHHHHHhcchHHHHHHhccc
Q psy7178 68 GLRNLGNTCFMSAGIQSLVAASALVEYFTNKS 99 (154)
Q Consensus 68 GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~ 99 (154)
||+|+||||||||+||+|+|+|+|++++.+..
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH
Confidence 89999999999999999999999999999865
No 25
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=5.4e-11 Score=102.30 Aligned_cols=76 Identities=21% Similarity=0.328 Sum_probs=63.0
Q ss_pred CccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCCCccChHHHHH
Q psy7178 60 NCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQ 139 (154)
Q Consensus 60 ~~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~ 139 (154)
.....|++||+|.|.||||||+||+|+.+..||+.+......... ....+..+|+++|..|..++ .+++..+|..
T Consensus 187 SKkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~p~----grdSValaLQr~Fynlq~~~-~PvdTteltr 261 (1089)
T COG5077 187 SKKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDHPR----GRDSVALALQRLFYNLQTGE-EPVDTTELTR 261 (1089)
T ss_pred cccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCCCC----ccchHHHHHHHHHHHHhccC-CCcchHHhhh
Confidence 356789999999999999999999999999999999887654332 23689999999999999887 6677777664
Q ss_pred H
Q psy7178 140 I 140 (154)
Q Consensus 140 ~ 140 (154)
.
T Consensus 262 s 262 (1089)
T COG5077 262 S 262 (1089)
T ss_pred h
Confidence 4
No 26
>KOG1872|consensus
Probab=98.93 E-value=3.4e-10 Score=92.92 Aligned_cols=85 Identities=26% Similarity=0.365 Sum_probs=69.6
Q ss_pred CcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhcc-CCCchhHHHHHHHHHHHHHHcCCCCccChHHHHHHHH
Q psy7178 64 RGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLK-SSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQILG 142 (154)
Q Consensus 64 ~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~-~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~~l~ 142 (154)
.-.+||.|+|||||||+.+|||-..+++...+.......... .......++.+++.+|+.|.++ ..+.|..++..++
T Consensus 103 ~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~--~~v~pi~llqtl~ 180 (473)
T KOG1872|consen 103 PLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK--GAVAPINLLQTLS 180 (473)
T ss_pred cCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc--CCcchHHHHHHHH
Confidence 445799999999999999999999999998887655332211 1112467889999999999988 7899999999999
Q ss_pred hhCCCCCC
Q psy7178 143 VHYPQFKD 150 (154)
Q Consensus 143 ~~~~~F~~ 150 (154)
+.+|+|..
T Consensus 181 ~~~Pqfa~ 188 (473)
T KOG1872|consen 181 SQYPQFAE 188 (473)
T ss_pred HHhHHHHH
Confidence 99999976
No 27
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=98.84 E-value=8.9e-09 Score=81.44 Aligned_cols=72 Identities=18% Similarity=0.161 Sum_probs=62.2
Q ss_pred cccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHH-cCCCCccChHHHHHHHHhh
Q psy7178 67 CGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMW-SGQYSIVHPSDFKQILGVH 144 (154)
Q Consensus 67 ~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~-~~~~~~i~P~~~~~~l~~~ 144 (154)
.||.|.+++||+||+||+|+.+|++++.++... . +.+ ..+|.++|.-||+.|. .++.....+..|+++++..
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~-~--c~~---e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~~ 73 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL-E--CPK---EFCLLCELGFLFDMLDSKAKGINCQASNFLRALSWI 73 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc-C--CCc---cccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhcC
Confidence 599999999999999999999999999999876 2 211 3799999999999999 7776778888999888765
No 28
>KOG2026|consensus
Probab=98.65 E-value=6.1e-08 Score=78.19 Aligned_cols=89 Identities=25% Similarity=0.355 Sum_probs=73.9
Q ss_pred CccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCC--CCccChHHH
Q psy7178 60 NCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQ--YSIVHPSDF 137 (154)
Q Consensus 60 ~~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~--~~~i~P~~~ 137 (154)
..+.+|.+||.|+-++-|+|++||.|.|.+++|+|++...... +....++..|..+++++|+.+ +..++|.+|
T Consensus 128 ~tYLpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n~~-----d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~ 202 (442)
T KOG2026|consen 128 STYLPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEENYF-----DNLTELVQRLGELIRKLWNPRNFKGHVSPHEF 202 (442)
T ss_pred CcceeeeeccchhhhHHHHHHHHHHHhccchhhhhhccccccc-----chhHHHHHHHHHHHHHhcChhhhcccCCHHHH
Confidence 4678999999999999999999999999999999999874422 234789999999999999864 467999999
Q ss_pred HHHHHhh-CCCCCCCCC
Q psy7178 138 KQILGVH-YPQFKDYRQ 153 (154)
Q Consensus 138 ~~~l~~~-~~~F~~~~Q 153 (154)
++++... ...|.-.+|
T Consensus 203 lqaV~~~s~k~f~i~~q 219 (442)
T KOG2026|consen 203 LQAVMKLSKKRFRIGQQ 219 (442)
T ss_pred HHHHHHHhhhheecCCC
Confidence 9988663 455666655
No 29
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.60 E-value=4.9e-08 Score=76.58 Aligned_cols=57 Identities=16% Similarity=0.139 Sum_probs=43.2
Q ss_pred CCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHH
Q psy7178 63 QRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKM 124 (154)
Q Consensus 63 ~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 124 (154)
..+.+||.|+|.+||+|++||+|+++|+||+++........ ...++.++|..||..+
T Consensus 12 ~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~~~~~~~~-----~~~~l~~el~~lfs~~ 68 (268)
T cd02672 12 KTNYAGLENHITNSYCNSLLQLLYFIPPFRNFTAIILVACP-----KESCLLCELGYLFSTL 68 (268)
T ss_pred cccccccccCCccchHHHHHHHHHhcHHHHHHHHhhcccCC-----cCccHHHHHHHHHHHH
Confidence 34689999999999999999999999999998332222111 1368888888887443
No 30
>KOG1866|consensus
Probab=98.46 E-value=1.7e-07 Score=80.92 Aligned_cols=83 Identities=22% Similarity=0.337 Sum_probs=64.9
Q ss_pred ccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCCCccChHHHHHH
Q psy7178 61 CAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQI 140 (154)
Q Consensus 61 ~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~~ 140 (154)
....+.+||+|-|+|||||+++|-|.++|.+++.++................+.++++.+|..+..++-.++-|..|-+.
T Consensus 90 Rpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~Wk~ 169 (944)
T KOG1866|consen 90 RPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPEGFWKQ 169 (944)
T ss_pred CCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHH
Confidence 44678999999999999999999999999999988776555221111122449999999999999888788888877766
Q ss_pred HHh
Q psy7178 141 LGV 143 (154)
Q Consensus 141 l~~ 143 (154)
++-
T Consensus 170 Fr~ 172 (944)
T KOG1866|consen 170 FRL 172 (944)
T ss_pred hhc
Confidence 544
No 31
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.33 E-value=5.1e-07 Score=68.32 Aligned_cols=20 Identities=65% Similarity=1.089 Sum_probs=19.2
Q ss_pred ccccCCcchHHHHHHHHHhc
Q psy7178 68 GLRNLGNTCFMSAGIQSLVA 87 (154)
Q Consensus 68 GL~NlGNTCy~NSvLQ~L~~ 87 (154)
||.|.||+||+||+||+|.+
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH
Confidence 89999999999999999976
No 32
>KOG1871|consensus
Probab=98.21 E-value=1.2e-06 Score=70.86 Aligned_cols=64 Identities=17% Similarity=0.141 Sum_probs=48.2
Q ss_pred ccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHH
Q psy7178 61 CAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMW 125 (154)
Q Consensus 61 ~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 125 (154)
.....++|+.|-||.|||||+||+|+.|++|.+.+.... +..........+++.++..+...+.
T Consensus 23 p~~i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~-~~~~~~~~~stp~lda~~~~~~df~ 86 (420)
T KOG1871|consen 23 PVPIDPRGSINKCNICFMNSILQALLYCSPFYNLLELIK-RADGTVKEGSTPLLDASRPASSDFN 86 (420)
T ss_pred ccccCCccccccceeEeeHHHHHHHHhCccHHHHHHhhh-hhcCceecccchhHHHHHHHHhhcc
Confidence 344788999999999999999999999999999887655 2221111334677777777776665
No 33
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.20 E-value=1.6e-06 Score=64.83 Aligned_cols=20 Identities=50% Similarity=1.024 Sum_probs=19.6
Q ss_pred ccccCCcchHHHHHHHHHhc
Q psy7178 68 GLRNLGNTCFMSAGIQSLVA 87 (154)
Q Consensus 68 GL~NlGNTCy~NSvLQ~L~~ 87 (154)
||.|.||+||+||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH
Confidence 89999999999999999998
No 34
>KOG1864|consensus
Probab=97.45 E-value=0.00014 Score=62.75 Aligned_cols=29 Identities=28% Similarity=0.576 Sum_probs=26.7
Q ss_pred cccCCcchHHHHHHHHHhcchHHHHHHhc
Q psy7178 69 LRNLGNTCFMSAGIQSLVAASALVEYFTN 97 (154)
Q Consensus 69 L~NlGNTCy~NSvLQ~L~~~p~f~~~l~~ 97 (154)
|+|.||+||.|++||+|..++.|+.-+..
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~ 62 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQ 62 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHH
Confidence 99999999999999999999999876654
No 35
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=97.37 E-value=0.00013 Score=55.96 Aligned_cols=22 Identities=59% Similarity=0.967 Sum_probs=20.4
Q ss_pred ccccCCcchHHHHHHHHHhcch
Q psy7178 68 GLRNLGNTCFMSAGIQSLVAAS 89 (154)
Q Consensus 68 GL~NlGNTCy~NSvLQ~L~~~p 89 (154)
||.|.||||++|++.|+|++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~Q 22 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFSQQ 22 (228)
T ss_pred CccccCcchhHHHHHHHHHHHH
Confidence 8999999999999999999853
No 36
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=96.84 E-value=0.0011 Score=51.32 Aligned_cols=33 Identities=27% Similarity=0.587 Sum_probs=26.7
Q ss_pred cccCCcchHHHHHHHHHhcchHHHHHHhccccc
Q psy7178 69 LRNLGNTCFMSAGIQSLVAASALVEYFTNKSEE 101 (154)
Q Consensus 69 L~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~ 101 (154)
|.|.||.||+|+.+|+|.++-.....|......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~~~F~~~~QQ 34 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSSIGKINTEFDNDDQQ 34 (245)
T ss_pred ceecCCeeeehhHHHHHHHHhhhhhhcCCCchh
Confidence 789999999999999999877666666555443
No 37
>KOG1275|consensus
Probab=96.67 E-value=0.0062 Score=54.55 Aligned_cols=74 Identities=15% Similarity=0.088 Sum_probs=60.6
Q ss_pred CcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCCCccChHHHHHHHHh
Q psy7178 64 RGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQILGV 143 (154)
Q Consensus 64 ~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~~l~~ 143 (154)
.-++||.-.+-.-|.|++||.|+.+|++|..+++..... ..|+.|+|.-||..|..+.-.......|+.+++.
T Consensus 497 T~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~C~~-------e~CL~CELGFLF~Ml~~S~G~~Cqa~NFlraf~t 569 (1118)
T KOG1275|consen 497 TTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHICTK-------EFCLLCELGFLFTMLDSSTGDPCQANNFLRAFRT 569 (1118)
T ss_pred ceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCccch-------hHHHHHHHHHHHHHHhhhcCCccchhHHHHHHhh
Confidence 345688888888899999999999999999999873222 2799999999999999876667888888888765
Q ss_pred h
Q psy7178 144 H 144 (154)
Q Consensus 144 ~ 144 (154)
.
T Consensus 570 ~ 570 (1118)
T KOG1275|consen 570 N 570 (1118)
T ss_pred C
Confidence 3
No 38
>KOG4598|consensus
Probab=95.76 E-value=0.013 Score=51.42 Aligned_cols=38 Identities=8% Similarity=-0.018 Sum_probs=34.5
Q ss_pred ccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhcc
Q psy7178 61 CAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNK 98 (154)
Q Consensus 61 ~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~ 98 (154)
..+++++||.|..-|||+|+.+|+|+.+|+|++.+...
T Consensus 82 ~~~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts 119 (1203)
T KOG4598|consen 82 ENGHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTS 119 (1203)
T ss_pred cCCcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCC
Confidence 45688999999999999999999999999999998753
No 39
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=94.38 E-value=0.026 Score=41.72 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=16.6
Q ss_pred CCcccccccCCcchHHHHHHHHHhc
Q psy7178 63 QRGVCGLRNLGNTCFMSAGIQSLVA 87 (154)
Q Consensus 63 ~~~~~GL~NlGNTCy~NSvLQ~L~~ 87 (154)
...++|+-|.+|+|++||++|.+-.
T Consensus 30 ~~eft~~PN~~dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 30 KMEFTGLPNNHDNCWLNALLQLFRY 54 (193)
T ss_dssp --EEE----SSSTHHHHHHHHHHHH
T ss_pred ceEEecCCCCCCChHHHHHHHHHHH
Confidence 3456799999999999999998755
No 40
>KOG1864|consensus
Probab=86.02 E-value=0.84 Score=39.88 Aligned_cols=92 Identities=20% Similarity=0.100 Sum_probs=62.6
Q ss_pred cCCcccccccCCcchHHH--HHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcC--CCCccChHHH
Q psy7178 62 AQRGVCGLRNLGNTCFMS--AGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSG--QYSIVHPSDF 137 (154)
Q Consensus 62 ~~~~~~GL~NlGNTCy~N--SvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~--~~~~i~P~~~ 137 (154)
.....-|..|.+++|+.| ++.+.+..+..+++..+........ .......+...+..+++..-.. ....+.|..|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~ 306 (587)
T KOG1864|consen 228 ANERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKR-SYIIKEELLTCLLDLFSSISSRKKLVGRISPTRF 306 (587)
T ss_pred ccccccCccccCccccccchhhHHHHHhhhhhcccccchhhcccc-hhhhhHHHHHHhhhhccchhhhcccccccCcchh
Confidence 345678999999999999 9999999888887555443321110 0011233444444444444433 2345899999
Q ss_pred HHHHHhhCCCCCCCCCC
Q psy7178 138 KQILGVHYPQFKDYRQV 154 (154)
Q Consensus 138 ~~~l~~~~~~F~~~~Qq 154 (154)
...+++....|..+.||
T Consensus 307 ~~~~~~~~~~f~~~~qQ 323 (587)
T KOG1864|consen 307 ISDLIKENELFTNGMQQ 323 (587)
T ss_pred hhhhhhcCCccCchhhc
Confidence 99999999999999988
No 41
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=81.40 E-value=0.87 Score=35.30 Aligned_cols=20 Identities=30% Similarity=0.611 Sum_probs=18.6
Q ss_pred ccccCCc-chHHHHHHHHHhc
Q psy7178 68 GLRNLGN-TCFMSAGIQSLVA 87 (154)
Q Consensus 68 GL~NlGN-TCy~NSvLQ~L~~ 87 (154)
|..|.+| +|||-|+|=+||.
T Consensus 1 g~~~~~~~~cy~d~~~~~~f~ 21 (241)
T cd02670 1 GAQNHCNVSCYLDALLFAMFA 21 (241)
T ss_pred CCccccCceeehHHHHHHHHH
Confidence 7889999 9999999999987
No 42
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=50.54 E-value=31 Score=17.14 Aligned_cols=27 Identities=7% Similarity=0.069 Sum_probs=21.3
Q ss_pred HHHHHHHHHcCCCCccChHHHHHHHHh
Q psy7178 117 FALLVRKMWSGQYSIVHPSDFKQILGV 143 (154)
Q Consensus 117 l~~l~~~~~~~~~~~i~P~~~~~~l~~ 143 (154)
|..+|+.+-..+...|+..+|...+.+
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 567888887777789999999988874
No 43
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=39.28 E-value=52 Score=16.44 Aligned_cols=27 Identities=11% Similarity=0.147 Sum_probs=21.2
Q ss_pred HHHHHHHHHcCCCCccChHHHHHHHHh
Q psy7178 117 FALLVRKMWSGQYSIVHPSDFKQILGV 143 (154)
Q Consensus 117 l~~l~~~~~~~~~~~i~P~~~~~~l~~ 143 (154)
+..+|+.+-..+...|+-.+|+..+.+
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 566777777777788999999888765
No 44
>KOG1868|consensus
Probab=32.92 E-value=14 Score=32.89 Aligned_cols=15 Identities=60% Similarity=1.066 Sum_probs=14.3
Q ss_pred cccCCcchHHHHHHH
Q psy7178 69 LRNLGNTCFMSAGIQ 83 (154)
Q Consensus 69 L~NlGNTCy~NSvLQ 83 (154)
+.|+||+||+|+++|
T Consensus 205 ~~~l~~~~~~~~~~~ 219 (653)
T KOG1868|consen 205 VPNLGNTCYMNAVLQ 219 (653)
T ss_pred cchhhchhcccchhh
Confidence 789999999999997
No 45
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=30.09 E-value=60 Score=14.26 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=15.9
Q ss_pred HHHHHHHHHcCCCCccChHHHHHHHHh
Q psy7178 117 FALLVRKMWSGQYSIVHPSDFKQILGV 143 (154)
Q Consensus 117 l~~l~~~~~~~~~~~i~P~~~~~~l~~ 143 (154)
+..+|..+.......++..+|...+..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 344555555544456777777766543
No 46
>PF15444 TMEM247: Transmembrane protein 247
Probab=29.53 E-value=1e+02 Score=23.03 Aligned_cols=40 Identities=20% Similarity=0.442 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHc
Q psy7178 76 CFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWS 126 (154)
Q Consensus 76 Cy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 126 (154)
||+ .|..++-+.+..-||.+..+. -|+...|..|++-+|+
T Consensus 179 cfi--fihiiyvtkemvfflfskhyl---------fciaaillcliktlws 218 (218)
T PF15444_consen 179 CFI--FIHIIYVTKEMVFFLFSKHYL---------FCIAAILLCLIKTLWS 218 (218)
T ss_pred HHH--HHHHHHHhHHHHHHHHHhHHH---------HHHHHHHHHHHHHhcC
Confidence 665 667777777777666665443 5777788888888884
No 47
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=25.74 E-value=1.4e+02 Score=23.61 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=26.1
Q ss_pred ccCCcchHHHHHHHHHhcchHHHHHHhcc
Q psy7178 70 RNLGNTCFMSAGIQSLVAASALVEYFTNK 98 (154)
Q Consensus 70 ~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~ 98 (154)
+|.-|-|++-++|-+|.|+..+++.+-+.
T Consensus 6 ~N~~aLCWLDciLsaLVh~~~Lk~~~~~~ 34 (275)
T PF15499_consen 6 KNSNALCWLDCILSALVHLESLKNAVTEL 34 (275)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 58889999999999999999999988663
No 48
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=24.94 E-value=40 Score=23.16 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=17.1
Q ss_pred CCcccccccCCcchHHHHHH
Q psy7178 63 QRGVCGLRNLGNTCFMSAGI 82 (154)
Q Consensus 63 ~~~~~GL~NlGNTCy~NSvL 82 (154)
...+.|..|.|.++.+|+++
T Consensus 85 ~~~~~G~~~vGKstlin~l~ 104 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALV 104 (141)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 34577999999999999986
No 49
>smart00814 Alpha_TIF Alpha trans-inducing protein (Alpha-TIF). Alpha-TIF (VP16) from Herpes Simplex virus is an essential tegument protein involved in the transcriptional activation of viral immediate early (IE) promoters (alpha genes) during the lytic phase of viral infection. VP16 associates with cellular transcription factors to enhance transcription rates, including the general transcription factor TFIIB and the transcriptional coactivator PC4. The N-terminal residues of VP16 confer specificity for the IE genes, while the C-terminal residues are responsible for transcriptional activation. Within the C-terminal region are two activation regions that can independently and cooperatively activate transcription. VP16 forms a transcriptional regulatory complex with two cellular proteins, the POU-domain transcription factor Oct-1 and the cell-proliferation factor HCF-1. VP16 is an alpha/beta protein with an unusual fold. Other transcription factors may have a similar topology.
Probab=24.09 E-value=28 Score=28.42 Aligned_cols=13 Identities=46% Similarity=1.188 Sum_probs=11.0
Q ss_pred cccccc--cccCcCc
Q psy7178 5 NTWSQD--ECFSTAS 17 (154)
Q Consensus 5 ~~~~~~--~~~~~~~ 17 (154)
.+|||| +|||.+.
T Consensus 56 e~wNeDLFSc~P~n~ 70 (356)
T smart00814 56 ETWNEDLFSCFPTNE 70 (356)
T ss_pred HHhcchhhccCCCCh
Confidence 369999 9999983
No 50
>PF14855 PapJ: Pilus-assembly fibrillin subunit, chaperone
Probab=23.81 E-value=31 Score=25.33 Aligned_cols=13 Identities=31% Similarity=0.442 Sum_probs=11.1
Q ss_pred CCcchHHHHHHHH
Q psy7178 72 LGNTCFMSAGIQS 84 (154)
Q Consensus 72 lGNTCy~NSvLQ~ 84 (154)
+-..|+||+++|+
T Consensus 13 ll~S~smn~vlqA 25 (187)
T PF14855_consen 13 LLVSCSMNSVLQA 25 (187)
T ss_pred Hhhcchhhhhhhh
Confidence 4467999999998
No 51
>PF02232 Alpha_TIF: Alpha trans-inducing protein (Alpha-TIF) ; InterPro: IPR003174 Alpha-TIF (VP16) from Herpes Simplex virus is an essential tegument protein involved in the transcriptional activation of viral immediate early (IE) promoters (alpha genes) during the lytic phase of viral infection. VP16 associates with cellular transcription factors to enhance transcription rates, including the general transcription factor TFIIB and the transcriptional coactivator PC4. The N-terminal residues of VP16 confer specificity for the IE genes, while the C-terminal residues are responsible for transcriptional activation. Within the C-terminal region are two activation regions that can independently and cooperatively activate transcription []. VP16 forms a transcriptional regulatory complex with two cellular proteins, the POU-domain transcription factor Oct-1 and the cell-proliferation factor HCF-1 []. VP16 is an alpha/beta protein with an unusual fold. Other transcription factors may have a similar topology.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 16VP_A.
Probab=22.01 E-value=30 Score=28.17 Aligned_cols=13 Identities=31% Similarity=0.992 Sum_probs=4.3
Q ss_pred cccccc--cccCcCc
Q psy7178 5 NTWSQD--ECFSTAS 17 (154)
Q Consensus 5 ~~~~~~--~~~~~~~ 17 (154)
.+|||| +|||.+.
T Consensus 40 e~wNeDLFSclP~n~ 54 (345)
T PF02232_consen 40 ETWNEDLFSCLPRNE 54 (345)
T ss_dssp HH-----STTS---G
T ss_pred HHhcchhhhcCCCCh
Confidence 369999 9999874
No 52
>PF12295 Symplekin_C: Symplekin tight junction protein C terminal; InterPro: IPR022075 This domain family is found in eukaryotes, and is approximately 180 amino acids in length. There is a single completely conserved residue P that may be functionally important. Symplekn has been localized, by light and electron microscopy, to the plaque associated with the cytoplasmic face of the tight junction-containing zone (zonula occludens) of polar epithelial cells and of Sertoli cells of testis. However, both the mRNA and the protein can also be detected in a wide range of cell types that do not form tight junctions. Careful analyses have revealed that the protein occurs in all these diverse cells in the nucleoplasm, and only in those cells forming tight junctions is it recruited, partly but specifically, to the plaque structure of the zonula occludens.
Probab=21.10 E-value=1.3e+02 Score=22.23 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=19.9
Q ss_pred cchHHHHHHHHHhcchHHHHHHhc
Q psy7178 74 NTCFMSAGIQSLVAASALVEYFTN 97 (154)
Q Consensus 74 NTCy~NSvLQ~L~~~p~f~~~l~~ 97 (154)
-.=||+.++|++...|.++.++..
T Consensus 109 P~LfmRTviq~~~~~p~L~~FV~~ 132 (183)
T PF12295_consen 109 PLLFMRTVIQALQKYPSLRSFVSN 132 (183)
T ss_pred cHHHHHHHHHHHHHhhHHHHHHHH
Confidence 346899999999999999888874
No 53
>KOG1867|consensus
Probab=20.87 E-value=22 Score=30.54 Aligned_cols=30 Identities=17% Similarity=0.198 Sum_probs=23.0
Q ss_pred CCcccccccCCcchHHHHHHHHHhcchHHH
Q psy7178 63 QRGVCGLRNLGNTCFMSAGIQSLVAASALV 92 (154)
Q Consensus 63 ~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~ 92 (154)
..-..|+.+.+|+|+||..++.++.++.|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~g~~~~~~c~~~i 103 (492)
T KOG1867|consen 74 KLEHSGNKKHNNTIDVNNGLLYCFACPDFI 103 (492)
T ss_pred cccccccccccccceeehhhheeccCCcEe
Confidence 345578888888888888888888887553
Done!