Query psy7178
Match_columns 154
No_of_seqs 182 out of 1188
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 20:11:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7178.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7178hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 99.9 1.3E-22 4.4E-27 162.8 9.6 94 61-154 3-99 (367)
2 2gfo_A Ubiquitin carboxyl-term 99.9 4.9E-22 1.7E-26 161.5 8.5 93 62-154 58-153 (396)
3 3i3t_A Ubiquitin carboxyl-term 99.9 8.1E-22 2.8E-26 156.4 7.8 90 65-154 2-92 (355)
4 3nhe_A Ubiquitin carboxyl-term 99.8 2.1E-21 7.2E-26 153.6 9.3 94 61-154 4-99 (348)
5 1vjv_A Ubiquitin carboxyl-term 99.8 4.8E-21 1.6E-25 156.0 9.4 94 61-154 19-124 (415)
6 2ayn_A Ubiquitin carboxyl-term 99.8 9.5E-21 3.2E-25 153.3 7.5 92 62-154 10-108 (404)
7 3ihp_A Ubiquitin carboxyl-term 99.8 2.2E-20 7.6E-25 164.3 9.4 103 52-154 330-453 (854)
8 3mhs_A Ubiquitin carboxyl-term 99.8 3.6E-19 1.2E-23 147.2 8.4 95 60-154 135-241 (476)
9 1nb8_A Ubiquitin carboxyl-term 99.8 6.7E-19 2.3E-23 140.9 8.7 85 63-154 3-87 (353)
10 2f1z_A Ubiquitin carboxyl-term 99.7 1.3E-17 4.6E-22 139.6 7.0 87 61-154 170-256 (522)
11 2vhf_A Ubiquitin carboxyl-term 99.6 5.8E-16 2E-20 123.9 3.7 82 64-150 7-89 (374)
12 1qmy_A Protease, leader protea 83.6 0.67 2.3E-05 32.1 2.5 24 64-87 11-34 (167)
13 1kdl_A YOPD protein; yersinia, 28.0 33 0.0011 16.2 1.5 9 77-85 3-11 (26)
14 16vp_A Protein (VP16, VMW65, A 24.3 21 0.00073 28.0 0.7 13 5-17 36-50 (366)
15 2p09_A A non-biological ATP bi 24.1 25 0.00086 20.6 0.8 17 65-81 40-56 (81)
16 2lv7_A Calcium-binding protein 22.6 1.4E+02 0.0048 18.2 4.6 31 114-144 35-65 (100)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=99.88 E-value=1.3e-22 Score=162.76 Aligned_cols=94 Identities=37% Similarity=0.714 Sum_probs=82.2
Q ss_pred ccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhcc---CCCchhHHHHHHHHHHHHHHcCCCCccChHHH
Q psy7178 61 CAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLK---SSSACSSLVDEFALLVRKMWSGQYSIVHPSDF 137 (154)
Q Consensus 61 ~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~---~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~ 137 (154)
...+|++||.|+||||||||+||||+|+|+|+++|+...+....+ ..+....++.+|+.|++.||.++...++|..|
T Consensus 3 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~ 82 (367)
T 2y6e_A 3 HIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMF 82 (367)
T ss_dssp -CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHH
T ss_pred CCCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHH
Confidence 356789999999999999999999999999999999876654332 22334689999999999999998889999999
Q ss_pred HHHHHhhCCCCCCCCCC
Q psy7178 138 KQILGVHYPQFKDYRQV 154 (154)
Q Consensus 138 ~~~l~~~~~~F~~~~Qq 154 (154)
+..+++.++.|.+++||
T Consensus 83 ~~~l~~~~~~f~~~~Qq 99 (367)
T 2y6e_A 83 KTQVGRFAPQFSGYQQQ 99 (367)
T ss_dssp HHHHHHHCGGGCSSSCC
T ss_pred HHHHHHhhhhcCCCCCC
Confidence 99999999999999998
No 2
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=99.86 E-value=4.9e-22 Score=161.49 Aligned_cols=93 Identities=34% Similarity=0.701 Sum_probs=81.7
Q ss_pred cCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhcc---CCCchhHHHHHHHHHHHHHHcCCCCccChHHHH
Q psy7178 62 AQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLK---SSSACSSLVDEFALLVRKMWSGQYSIVHPSDFK 138 (154)
Q Consensus 62 ~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~---~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~ 138 (154)
..++++||.|+||||||||+||||+|+|+|+++|+...+....+ ..+....+..+|..|++.||.+....++|..|+
T Consensus 58 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~ 137 (396)
T 2gfo_A 58 SGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFK 137 (396)
T ss_dssp SSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHH
T ss_pred CCCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHHH
Confidence 46789999999999999999999999999999999876544322 223346899999999999999988899999999
Q ss_pred HHHHhhCCCCCCCCCC
Q psy7178 139 QILGVHYPQFKDYRQV 154 (154)
Q Consensus 139 ~~l~~~~~~F~~~~Qq 154 (154)
..+++.++.|.+++||
T Consensus 138 ~~l~~~~~~f~~~~Qq 153 (396)
T 2gfo_A 138 ITIGKINDQFAGYSQQ 153 (396)
T ss_dssp HHHHHHCGGGSSSSCC
T ss_pred HHHHHhchhhcCCCCC
Confidence 9999999999999998
No 3
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=99.85 E-value=8.1e-22 Score=156.40 Aligned_cols=90 Identities=29% Similarity=0.589 Sum_probs=75.9
Q ss_pred cccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCC-CccChHHHHHHHHh
Q psy7178 65 GVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQY-SIVHPSDFKQILGV 143 (154)
Q Consensus 65 ~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~-~~i~P~~~~~~l~~ 143 (154)
|++||.|+||||||||+||+|+|+|+|+++++...+.......+...++..+|+.|+..||.+.. ..++|..|+..+++
T Consensus 2 G~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~l~~ 81 (355)
T 3i3t_A 2 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQK 81 (355)
T ss_dssp -CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHHHHH
T ss_pred CCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Confidence 68999999999999999999999999999999866554433223346899999999999998753 78999999999999
Q ss_pred hCCCCCCCCCC
Q psy7178 144 HYPQFKDYRQV 154 (154)
Q Consensus 144 ~~~~F~~~~Qq 154 (154)
..+.|.+++||
T Consensus 82 ~~~~f~~~~Qq 92 (355)
T 3i3t_A 82 YVPSFSGYSQQ 92 (355)
T ss_dssp HCGGGCSSCCC
T ss_pred hChhhCCCCcc
Confidence 99999999998
No 4
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=99.85 E-value=2.1e-21 Score=153.65 Aligned_cols=94 Identities=38% Similarity=0.662 Sum_probs=80.4
Q ss_pred ccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhcc-CCCchhHHHHHHHHHHHHHH-cCCCCccChHHHH
Q psy7178 61 CAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLK-SSSACSSLVDEFALLVRKMW-SGQYSIVHPSDFK 138 (154)
Q Consensus 61 ~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~-~~~~~~~l~~~l~~l~~~~~-~~~~~~i~P~~~~ 138 (154)
....|++||.|+||||||||+||+|+|+|+|+++++...+..... ......+++++|+.|+..|| .+....++|..|+
T Consensus 4 k~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~~~ 83 (348)
T 3nhe_A 4 KSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFK 83 (348)
T ss_dssp --CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCCTTCEECCHHHH
T ss_pred CCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcCCCCCccCHHHHH
Confidence 456789999999999999999999999999999999866544332 12245799999999999999 5667899999999
Q ss_pred HHHHhhCCCCCCCCCC
Q psy7178 139 QILGVHYPQFKDYRQV 154 (154)
Q Consensus 139 ~~l~~~~~~F~~~~Qq 154 (154)
..+++..+.|.+++||
T Consensus 84 ~~l~~~~~~f~~~~Qq 99 (348)
T 3nhe_A 84 TQIQRYAPRFVGYNQQ 99 (348)
T ss_dssp HHHHHHSGGGSSSCCB
T ss_pred HHHHHhhhhhCCCCcc
Confidence 9999999999999997
No 5
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=99.84 E-value=4.8e-21 Score=156.00 Aligned_cols=94 Identities=24% Similarity=0.388 Sum_probs=79.2
Q ss_pred ccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCC-----chhHHHHHHHHHHHHHHcCCCCccChH
Q psy7178 61 CAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSS-----ACSSLVDEFALLVRKMWSGQYSIVHPS 135 (154)
Q Consensus 61 ~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~-----~~~~l~~~l~~l~~~~~~~~~~~i~P~ 135 (154)
....+++||.|+||||||||+||+|+++|+|+++|+............ ...+++++|+.||..||.+...+++|.
T Consensus 19 ~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p~ 98 (415)
T 1vjv_A 19 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPV 98 (415)
T ss_dssp CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCH
T ss_pred ccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCHH
Confidence 345678999999999999999999999999999999866543221110 146999999999999999887899999
Q ss_pred HHHHHHHhhCCCCC-------CCCCC
Q psy7178 136 DFKQILGVHYPQFK-------DYRQV 154 (154)
Q Consensus 136 ~~~~~l~~~~~~F~-------~~~Qq 154 (154)
.|+..+++.+|.|+ ++.||
T Consensus 99 ~~~~~l~~~~~~f~~~~~~~~~~~Qq 124 (415)
T 1vjv_A 99 VLLNTLRKCYPQFAERDSQGGFYKQQ 124 (415)
T ss_dssp HHHHHHHHHCGGGGCBC----CBCCC
T ss_pred HHHHHHHHhCchhhccccCCCCcccc
Confidence 99999999999998 78887
No 6
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=99.82 E-value=9.5e-21 Score=153.29 Aligned_cols=92 Identities=27% Similarity=0.402 Sum_probs=76.2
Q ss_pred cCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhcc-CCCchhHHHHHHHHHHHHHHcCCCCccChHHHHHH
Q psy7178 62 AQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLK-SSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQI 140 (154)
Q Consensus 62 ~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~-~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~~ 140 (154)
....++||.|+||||||||+||||+|+|+|+++|+........+ ......+++++|+.||..||.+. .+++|..|+..
T Consensus 10 ~~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~-~~v~P~~~~~~ 88 (404)
T 2ayn_A 10 AMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTS-SSIPPIILLQF 88 (404)
T ss_dssp -CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHC-SEECCHHHHHH
T ss_pred ccCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcCC-CcCChHHHHHH
Confidence 35678999999999999999999999999999999865441111 11235799999999999999876 88999999999
Q ss_pred HHhhCCCCC------CCCCC
Q psy7178 141 LGVHYPQFK------DYRQV 154 (154)
Q Consensus 141 l~~~~~~F~------~~~Qq 154 (154)
+++.+|.|+ ++.||
T Consensus 89 l~~~~~~f~~~~~~~~~~Qq 108 (404)
T 2ayn_A 89 LHMAFPQFAEKGEQGQYLQQ 108 (404)
T ss_dssp HHHHCGGGGCBCTTSCBCCC
T ss_pred HHHhCchhhccccCCCcccc
Confidence 999999998 46776
No 7
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.82 E-value=2.2e-20 Score=164.30 Aligned_cols=103 Identities=24% Similarity=0.382 Sum_probs=81.0
Q ss_pred ccCCCCcCCccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchh-ccCCCchhHHHHHHHHHHHHHHcCC--
Q psy7178 52 SEDNDVSDNCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDS-LKSSSACSSLVDEFALLVRKMWSGQ-- 128 (154)
Q Consensus 52 ~~~~~~~~~~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~-~~~~~~~~~l~~~l~~l~~~~~~~~-- 128 (154)
.++|....+.+.+|++||.|+||||||||+||+|+|+|+|+++|+....... ........++.++|++|+..||++.
T Consensus 330 ~~~g~~l~p~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s 409 (854)
T 3ihp_A 330 QESGVPLKPLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYS 409 (854)
T ss_dssp --------CCCSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC--
T ss_pred cccCcccccccCCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhccccc
Confidence 3566667788899999999999999999999999999999999986543221 1222345789999999999999754
Q ss_pred ------------------CCccChHHHHHHHHhhCCCCCCCCCC
Q psy7178 129 ------------------YSIVHPSDFKQILGVHYPQFKDYRQV 154 (154)
Q Consensus 129 ------------------~~~i~P~~~~~~l~~~~~~F~~~~Qq 154 (154)
...++|..|+..+++.++.|.+++||
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQ 453 (854)
T 3ihp_A 410 KPVPESGDGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQ 453 (854)
T ss_dssp -------------------CCBCCHHHHHHHTTTCTTTTSSSCC
T ss_pred cccccccccccccccccCCCccChHHHHHHHhhhcccccccccc
Confidence 34899999999999999999999998
No 8
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.78 E-value=3.6e-19 Score=147.24 Aligned_cols=95 Identities=20% Similarity=0.283 Sum_probs=76.0
Q ss_pred CccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCC---------C
Q psy7178 60 NCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQY---------S 130 (154)
Q Consensus 60 ~~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~---------~ 130 (154)
....+|++||.|+||||||||+||+|+|+|+|+++++...+...........++.++|..++..||.... .
T Consensus 135 ~~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~ 214 (476)
T 3mhs_A 135 MERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTS 214 (476)
T ss_dssp GGGTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------C
T ss_pred ccCCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhccccccccccccc
Confidence 3467899999999999999999999999999999999866654443333457899999999999997432 2
Q ss_pred ccChHHHH---HHHHhhCCCCCCCCCC
Q psy7178 131 IVHPSDFK---QILGVHYPQFKDYRQV 154 (154)
Q Consensus 131 ~i~P~~~~---~~l~~~~~~F~~~~Qq 154 (154)
.+.|..++ ..+++.++.|.+++||
T Consensus 215 ~~~~~~~~~~l~~~~~~~~~f~~~~Qq 241 (476)
T 3mhs_A 215 TNRQTGFIYLLTCAWKINQNLAGYSQQ 241 (476)
T ss_dssp CCSCHHHHHHHHHHHHHCGGGSSSSCE
T ss_pred ccCcchHHHHHHHHHHhccccCCCCCc
Confidence 45666555 4556899999999997
No 9
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=99.77 E-value=6.7e-19 Score=140.88 Aligned_cols=85 Identities=19% Similarity=0.327 Sum_probs=70.8
Q ss_pred CCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCCCccChHHHHHHHH
Q psy7178 63 QRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQILG 142 (154)
Q Consensus 63 ~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~~l~ 142 (154)
..|++||.|+||||||||+||||+|+|+|+++++....... ....++.++|+.||..|+.+. .++.|..|+..++
T Consensus 3 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~~----~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~~~~ 77 (353)
T 1nb8_A 3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGD----DSSKSVPLALQRVFYELQHSD-KPVGTKKLTKSFG 77 (353)
T ss_dssp CSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTTS----CTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHHHHT
T ss_pred CCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCCC----cccccHHHHHHHHHHHHhhcC-CCCCCHHHHhhcC
Confidence 46889999999999999999999999999999976532211 123578899999999999876 5789999998875
Q ss_pred hhCCCCCCCCCC
Q psy7178 143 VHYPQFKDYRQV 154 (154)
Q Consensus 143 ~~~~~F~~~~Qq 154 (154)
.+.|.++.||
T Consensus 78 --~~~~~~~~Qq 87 (353)
T 1nb8_A 78 --WETLDSFMQH 87 (353)
T ss_dssp --CCBTTTTTTS
T ss_pred --CCCCCcccch
Confidence 3789999997
No 10
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.70 E-value=1.3e-17 Score=139.60 Aligned_cols=87 Identities=18% Similarity=0.307 Sum_probs=69.4
Q ss_pred ccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCCCccChHHHHHH
Q psy7178 61 CAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQI 140 (154)
Q Consensus 61 ~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~~ 140 (154)
....|++||.|+||||||||+||||+|+|+|+++++....... ....++..+|+.||..|+.+. .++.|..|+..
T Consensus 170 ~~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~~----~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~~ 244 (522)
T 2f1z_A 170 KKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGD----DSSKSVPLALQRVFYELQHSD-KPVGTKKLTKS 244 (522)
T ss_dssp TTTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCSS----CTTTCHHHHHHHHHHHHHHCS-SCBCCTTHHHH
T ss_pred cccCCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccCC----cccchHHHHHHHHHHHHhcCC-CccCcHHHHhh
Confidence 4467899999999999999999999999999999976532211 123578899999999999876 67899999877
Q ss_pred HHhhCCCCCCCCCC
Q psy7178 141 LGVHYPQFKDYRQV 154 (154)
Q Consensus 141 l~~~~~~F~~~~Qq 154 (154)
++ .+.|.++.||
T Consensus 245 ~~--~~~~~~~~Qq 256 (522)
T 2f1z_A 245 FG--WETLDSFMQH 256 (522)
T ss_dssp TC--CCTTTSSTTS
T ss_pred cC--CccCCCcccc
Confidence 64 3789999987
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.58 E-value=5.8e-16 Score=123.91 Aligned_cols=82 Identities=12% Similarity=0.082 Sum_probs=68.0
Q ss_pred CcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHH-HHHHHHHHcCCCCccChHHHHHHHH
Q psy7178 64 RGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEF-ALLVRKMWSGQYSIVHPSDFKQILG 142 (154)
Q Consensus 64 ~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l-~~l~~~~~~~~~~~i~P~~~~~~l~ 142 (154)
..++||.|+||||||||+||||+.+|++.+.|+........ ......++.+| +.|+..|.+ ..+.|..|+..|+
T Consensus 7 g~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~--~~~~~~l~~~L~r~i~~~Lrk---~~~~P~~~l~~LR 81 (374)
T 2vhf_A 7 GKKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKND--VEYYSETQELLRTEIVNPLRI---YGYVCATKIMKLR 81 (374)
T ss_dssp EESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTS--CTTHHHHHHHHHHTTHHHHHH---TSEECHHHHHHHH
T ss_pred CCCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCc--chhHHHHHHHHHHHHHHHHhh---cCCCcHHHHHHHH
Confidence 45799999999999999999999999999999987544322 12234688899 789999986 6799999999999
Q ss_pred hhCCCCCC
Q psy7178 143 VHYPQFKD 150 (154)
Q Consensus 143 ~~~~~F~~ 150 (154)
+..|+|+.
T Consensus 82 ~~~pQfae 89 (374)
T 2vhf_A 82 KILEKVEA 89 (374)
T ss_dssp HHHHHHC-
T ss_pred HHhHHHhc
Confidence 99998875
No 12
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=83.64 E-value=0.67 Score=32.12 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=20.3
Q ss_pred CcccccccCCcchHHHHHHHHHhc
Q psy7178 64 RGVCGLRNLGNTCFMSAGIQSLVA 87 (154)
Q Consensus 64 ~~~~GL~NlGNTCy~NSvLQ~L~~ 87 (154)
..+.|+-|--++|++|++||....
T Consensus 11 k~fys~pN~hdncWLNtilQLfry 34 (167)
T 1qmy_A 11 KTFYSRPNNHDNAWLNAILQLFRY 34 (167)
T ss_dssp EECCCCCCSSSCHHHHHHHHHHHH
T ss_pred cccccCCCCCcchHHHHHHHHHHH
Confidence 456789999999999999998644
No 13
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=27.99 E-value=33 Score=16.25 Aligned_cols=9 Identities=22% Similarity=0.475 Sum_probs=6.2
Q ss_pred HHHHHHHHH
Q psy7178 77 FMSAGIQSL 85 (154)
Q Consensus 77 y~NSvLQ~L 85 (154)
||+.+||.+
T Consensus 3 fMkDvlql~ 11 (26)
T 1kdl_A 3 FMKDVLRLI 11 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 677777764
No 14
>16vp_A Protein (VP16, VMW65, ATIF); transcriptional regulatory protein; 2.10A {Human herpesvirus 1} SCOP: d.180.1.1
Probab=24.31 E-value=21 Score=28.04 Aligned_cols=13 Identities=31% Similarity=0.836 Sum_probs=10.9
Q ss_pred cccccc--cccCcCc
Q psy7178 5 NTWSQD--ECFSTAS 17 (154)
Q Consensus 5 ~~~~~~--~~~~~~~ 17 (154)
.+|||| +|||.+.
T Consensus 36 e~wNeDLFSclP~n~ 50 (366)
T 16vp_A 36 DTWNEDLFSALPTNA 50 (366)
T ss_dssp HHCCCCCSTTSCCCG
T ss_pred HHhcchhhccCCCCh
Confidence 369999 9999974
No 15
>2p09_A A non-biological ATP binding protein with two MUT N32D and D65V; alpha/beta fold, de novo protein; HET: ATP 1PE; 1.65A {Unidentified} PDB: 3dgl_A* 3dgm_A* 3dgn_A* 3ltb_A* 3ltc_A* 3ltd_A* 3dgo_A* 3lta_A* 3lt8_A* 3lt9_A* 2p05_A* 1uw1_A* 2p0x_A*
Probab=24.11 E-value=25 Score=20.62 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=13.7
Q ss_pred cccccccCCcchHHHHH
Q psy7178 65 GVCGLRNLGNTCFMSAG 81 (154)
Q Consensus 65 ~~~GL~NlGNTCy~NSv 81 (154)
..-.+.|..-|||-||+
T Consensus 40 khlriynmcktcfnnsi 56 (81)
T 2p09_A 40 KHLRIYNMCKTCFNNSI 56 (81)
T ss_dssp TEEEEESSCHHHHHHHH
T ss_pred ceeeHHHHHHHHhcCce
Confidence 34567899999999886
No 16
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=22.65 E-value=1.4e+02 Score=18.22 Aligned_cols=31 Identities=3% Similarity=0.057 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHcCCCCccChHHHHHHHHhh
Q psy7178 114 VDEFALLVRKMWSGQYSIVHPSDFKQILGVH 144 (154)
Q Consensus 114 ~~~l~~l~~~~~~~~~~~i~P~~~~~~l~~~ 144 (154)
..+++.+|+.+-..+...|+..+|...+...
T Consensus 35 ~~el~~~F~~~D~d~~G~I~~~El~~~l~~l 65 (100)
T 2lv7_A 35 LEEIREAFKVFDRDGNGFISKQELGTAMRSL 65 (100)
T ss_dssp HHHHHHHHHHTCSSCSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHh
Confidence 3445555555554444556666666655554
Done!