RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7178
(154 letters)
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 823
Score = 74.1 bits (182), Expect = 3e-16
Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 50 EISEDNDVSDNCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSA 109
I +D++ S N + G CGLRNLGNTC+M++ +Q L+ L +YF + E+S+ +
Sbjct: 250 SIVDDHNRSIN-KEAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENP 308
Query: 110 C---SSLVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
S+ +A L+++++ G PS FK+ +G +F Y Q
Sbjct: 309 LGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQ 355
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.
Length = 313
Score = 72.1 bits (177), Expect = 9e-16
Identities = 32/91 (35%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 65 GVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKM 124
G GL NLGNTC+M++ +Q+L + L +Y S E S L A L +
Sbjct: 2 GPTGLANLGNTCYMNSVLQALFSIPPLRDYLLQNSSELINPLGSLN-QLPRALADLFHAL 60
Query: 125 WSGQ--YSIVHPSDFKQILGVHYPQFKDYRQ 153
S + V P +F Q LG PQF Y Q
Sbjct: 61 QSPNSKNASVSPKNFLQALGKISPQFSGYMQ 91
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 311
Score = 56.6 bits (137), Expect = 3e-10
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 26/106 (24%)
Query: 68 GLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACS------SLVDEFALLV 121
GLRNLGN+C++++ +Q L + + + D L++ L + L
Sbjct: 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRY------DDLENKFPSDVVDPANDLNCQLIKLA 54
Query: 122 RKMWSGQYSI--------------VHPSDFKQILGVHYPQFKDYRQ 153
+ SG+YS + PS FK ++G +P+F RQ
Sbjct: 55 DGLLSGRYSKPASLKSENDPYQVGIKPSMFKALIGKGHPEFSTMRQ 100
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyse bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 305
Score = 53.9 bits (130), Expect = 2e-09
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 68 GLRNLGNTCFMSAGIQSLVAASALVE---YFTNKSEEDSLKSSSACSSLVDEFALLVRKM 124
GL NLGNTC++++ +Q L + L + + ++ + +L + L M
Sbjct: 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRG----ANQSSDNLTNALRDLFDTM 56
Query: 125 WSGQYSIVHPSDFKQILGVHYPQF 148
Q + P +F Q+L + +PQF
Sbjct: 57 DKKQEPVP-PIEFLQLLRMAFPQF 79
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 230
Score = 44.6 bits (106), Expect = 4e-06
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 68 GLRNLGNTCFMSAGIQSLVA 87
GLRNLGNTC+M++ +Q L A
Sbjct: 1 GLRNLGNTCYMNSILQCLSA 20
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 440
Score = 43.8 bits (104), Expect = 9e-06
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 65 GVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKM 124
G GL N+ N + + IQ+L + +F E+ S LV + L+RK+
Sbjct: 118 GFVGLNNIKNNDYANVIIQALSHVKPIRNFFL--LYENYENIKDRKSELVKRLSELIRKI 175
Query: 125 WS-----GQYSIVHPSDFKQILGVH 144
W+ G S P + Q +
Sbjct: 176 WNPRNFKGHVS---PHELLQAVSKV 197
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 415
Score = 42.3 bits (99), Expect = 3e-05
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 68 GLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSS----LVDEFALLVRK 123
GLRN GNTC+M+ +Q L++ L + ++ + +F L
Sbjct: 73 GLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYET 132
Query: 124 MWS-GQYSIVHPSDFKQILGVHYPQFKDYRQ 153
G SI P +F IL F Q
Sbjct: 133 PGCHGPKSI-SPRNFIDILSGRNKLFSGDMQ 162
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 328
Score = 41.6 bits (98), Expect = 5e-05
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 68 GLRNLGNTCFMSAGIQSLVAASALVEYF-----TNKSEEDSLKSSSACS 111
GL NLG TCFM+ +Q+L+ L YF + S S +C+
Sbjct: 2 GLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCA 50
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl
hydrolases. They are intracellular peptidases that
remove ubiquitin molecules from polyubiquinated peptides
by cleavage of isopeptide bonds. They hydrolyse bonds
involving the carboxyl group of the C-terminal Gly
residue of ubiquitin The purpose of the
de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 255
Score = 40.5 bits (95), Expect = 9e-05
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 68 GLRNLGNTCFMSAGIQSLVA----ASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRK 123
GL NLGNTC++++ +Q+L + A + + +K E+ KSS S L+
Sbjct: 1 GLNNLGNTCYLNSVLQALFSEQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLK-SLIHD 59
Query: 124 MWSGQYSI 131
++ G+
Sbjct: 60 LFGGKLES 67
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification,
protein turnover, chaperones].
Length = 749
Score = 40.8 bits (95), Expect = 1e-04
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 67 CGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWS 126
GL NLGN+C++S+ IQSLV + E F + + L + L+ KM
Sbjct: 304 VGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKE 363
Query: 127 GQYSI----VHPSDFKQILGVHYPQFKDYRQ 153
+ + P DFK ++G +P+F + Q
Sbjct: 364 TPDNEYVNGISPLDFKMLIGQDHPEFGKFAQ 394
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 304
Score = 40.0 bits (94), Expect = 2e-04
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Query: 67 CGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWS 126
GL+NLGNTCF+++ +Q L L Y ++ + C ++ V + +
Sbjct: 2 AGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFC--MMCALEAHVERALA 59
Query: 127 GQYSIVHPSDFKQILGVHYPQFKDYRQ 153
P F L F+ RQ
Sbjct: 60 SSGPGSAPRIFSSNLKQISKHFRIGRQ 86
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 327
Score = 38.6 bits (90), Expect = 5e-04
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 68 GLRNLGNTCFMSAGIQSLVAAS 89
GL NLGNTC+M++ +Q+L A
Sbjct: 1 GLINLGNTCYMNSVLQALFMAK 22
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 240
Score = 37.3 bits (87), Expect = 0.001
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 68 GLRNLGNTCFMSAGIQSLVAASALVEY 94
GL NLGNTCFM++ +Q+L + +L+EY
Sbjct: 1 GLVNLGNTCFMNSVLQALASLPSLIEY 27
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 324
Score = 37.4 bits (87), Expect = 0.001
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 68 GLRNLGNTCFMSAGIQSLVAASALVE--YFTNKSEEDSLKSSSAC-----SSLVDEFALL 120
GL+NLG TC++++ +Q + Y N +E+ LK+ +++D+ L+
Sbjct: 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLI 60
Query: 121 VRKMWSGQYSIVHPSDFKQILG 142
++ G S+V PS F + LG
Sbjct: 61 FAQLQFGNRSVVDPSGFVKALG 82
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 279
Score = 34.3 bits (79), Expect = 0.015
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 68 GLRNLGNTCFMSAGIQSLVAASALVEYF 95
GL NLGNTCF +A +Q+L AL E
Sbjct: 1 GLSNLGNTCFFNAVMQNLSQTPALRELL 28
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 334
Score = 34.2 bits (79), Expect = 0.015
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 65 GVCGLRNLGNTCFMSAGIQSL 85
G GL+N G TC+M++ +Q L
Sbjct: 1 GYVGLKNQGATCYMNSLLQQL 21
>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 228
Score = 34.1 bits (78), Expect = 0.018
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 68 GLRNLGNTCFMSAGIQSLVAASALVEYFTNK 98
GL+N+GNTC+ SA IQSL + V FT+
Sbjct: 1 GLKNVGNTCWFSAVIQSLFSQQQDVSEFTHL 31
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase
[Posttranslational modification, protein turnover,
chaperones].
Length = 1089
Score = 32.5 bits (74), Expect = 0.072
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 65 GVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKM 124
G GLRN G TC+M++ +QSL +F K +D + D AL ++++
Sbjct: 192 GYVGLRNQGATCYMNSLLQSL--------FFIAKFRKDVYGIPTDHPRGRDSVALALQRL 243
Query: 125 WSGQYSIVHPSD 136
+ + P D
Sbjct: 244 FYNLQTGEEPVD 255
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 245
Score = 29.4 bits (66), Expect = 0.62
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 69 LRNLGNTCFMSAGIQSLVAASALVEYFTNKSEED 102
L N GN+C+ ++ +Q+L + + F N ++D
Sbjct: 2 LVNTGNSCYFNSTMQALSSIGKINTEFDNDDQQD 35
>gnl|CDD|221655 pfam12590, Acyl-thio_N, Acyl-ATP thioesterase. This domain
family is found in bacteria and eukaryotes, and is
typically between 120 and 131 amino acids in length.
The family is found in association with pfam01643. The
plant acyl-acyl carrier protein (ACP) thioesterases
(TEs) have roles in fatty acid synthesis.
Length = 124
Score = 28.6 bits (64), Expect = 0.68
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 14 STASAASSFPIPLPPPTSSDVCEGPENF 41
+TA+A++ FP+P P P S + GP +
Sbjct: 3 ATAAASAFFPVPSPSPDSGALGNGPSSL 30
>gnl|CDD|200508 cd11247, Sema_plexin_D1, The Sema domain, a protein interacting
module, of Plexin D1. Plexins are known as semaphorin
receptors and Plexin D1 has been identified as the
receptor of Sema3E. It binds to Sema3E directly with
high affinity. Sema3E is implicated in axonal path
finding and inhibition of developmental and
post-ischemic angiogenesis. Plexin D1 is broadly
expressed on tumor vessels and tumor cells in a number
of different types of human tumors. Plexin D1-Sema3E
interaction inhibits tumor growth but promotes
invasiveness and metastasis. The Sema domain is located
at the N-terminus and contains four disulfide bonds
formed by eight conserved cysteine residues. It serves
as a ligand-recognition and -binding module.
Length = 483
Score = 29.0 bits (65), Expect = 0.89
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 11 ECFSTASAASSFPIPLPPPTSSDVCEGPENFTGELSSLFEISEDNDVSDNCAQ--RGVCG 68
E + P+ P CE P T + + + + V C +G+C
Sbjct: 42 EAEAAVGPVLDSPLCHAPQLPQATCEHPRTLTDNYNKILQPDPEQGVLVVCGSIYQGLCQ 101
Query: 69 LRNLGN 74
LR L N
Sbjct: 102 LRRLYN 107
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 343
Score = 28.6 bits (64), Expect = 1.2
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 20/87 (22%)
Query: 68 GLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSAC----------------- 110
GL N+GNTC++++ +Q L + N +E + +S
Sbjct: 3 GLDNIGNTCYLNSLLQYFFTIKPLRDLVLN-FDESKAELASDYPTERRIGGREVSRSELQ 61
Query: 111 --SSLVDEFALLVRKMWSGQYSIVHPS 135
+ V E L + V PS
Sbjct: 62 RSNQFVYELRSLFNDLIHSNTRSVTPS 88
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase.
Length = 296
Score = 27.4 bits (61), Expect = 3.2
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 11/73 (15%)
Query: 68 GLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACS---SLVDEFALLVRKM 124
GL N G C+++A +Q + +F L+ S+ C L+ E L +
Sbjct: 2 GLENNGPNCYLNALLQLM--------FFIPPLFNAILRHSADCPKENCLLCELGFLFDML 53
Query: 125 WSGQYSIVHPSDF 137
++
Sbjct: 54 DKSTGQNCQATNL 66
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains contain
a P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins.
Length = 316
Score = 27.0 bits (60), Expect = 3.8
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 104 LKSSSACSSLVDEFALLVRKMWSGQYSIVH-PSDF 137
L SS + +DE A RK +G PSD
Sbjct: 244 LLSSPEGADFLDELAREGRKYGAGVILATQSPSDL 278
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 300
Score = 26.9 bits (60), Expect = 4.2
Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 25/88 (28%)
Query: 68 GLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSG 127
GL N GNTC+ ++ +Q+L YF N L+ L +
Sbjct: 1 GLENFGNTCYCNSVLQAL--------YFEN---------------LLTCLKDLFESISEQ 37
Query: 128 QYS--IVHPSDFKQILGVHYPQFKDYRQ 153
+ ++ P F L F +Y
Sbjct: 38 KKRTGVISPKKFITRLKRENELFDNYMH 65
>gnl|CDD|177958 PLN02324, PLN02324, triacylglycerol lipase.
Length = 415
Score = 26.9 bits (59), Expect = 4.6
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 18/70 (25%)
Query: 7 WSQDECFSTASAASSFPIPLP------------------PPTSSDVCEGPENFTGELSSL 48
W+ D F SA S FP+ P + D E GEL L
Sbjct: 147 WANDFDFPLESAISVFPVTDPKDNPRIGSGWLDIYTASDSRSPYDTTSAQEQVQGELKRL 206
Query: 49 FEISEDNDVS 58
E+ ++ ++S
Sbjct: 207 LELYKNEEIS 216
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 332
Score = 26.8 bits (59), Expect = 4.7
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 68 GLRNLGNTCFMSAGIQSL 85
GL NLGNTC++++ +Q L
Sbjct: 26 GLNNLGNTCYLNSVLQVL 43
>gnl|CDD|222930 PHA02786, PHA02786, uncharacterized protein; Provisional.
Length = 192
Score = 25.8 bits (56), Expect = 9.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 13 FSTASAASSFPIPLPPPTSSD 33
F T+S AS IP+ PP + D
Sbjct: 12 FVTSSIASPLYIPVIPPITED 32
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.130 0.388
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,356,970
Number of extensions: 598263
Number of successful extensions: 552
Number of sequences better than 10.0: 1
Number of HSP's gapped: 543
Number of HSP's successfully gapped: 30
Length of query: 154
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 65
Effective length of database: 6,990,096
Effective search space: 454356240
Effective search space used: 454356240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.1 bits)