RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7178
(154 letters)
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase
8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 348
Score = 76.7 bits (187), Expect = 6e-18
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 64 RGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSS---LVDEFALL 120
+ GLRNLGNTC+M++ +Q L A L +YF +D + S+ + +EF ++
Sbjct: 13 PALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGII 72
Query: 121 VRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
++ +W+GQY + P DFK +G QF Y Q
Sbjct: 73 MKALWTGQYRYISPKDFKITIGKINDQFAGYSQ 105
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase
2, USP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 336
Score = 72.8 bits (177), Expect = 1e-16
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 65 GVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSAC-SSLVDEFALLVRK 123
G+ GLRNLGNTCFM++ +Q L L +Y + L S ++LV+EFA L++
Sbjct: 2 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQT 61
Query: 124 MWSGQYSIVH-PSDFKQILGVHYPQFKDYRQV 154
+W+ + V PS+FK + + P+F Y Q
Sbjct: 62 IWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQ 93
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase
14 {Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 70.9 bits (172), Expect = 8e-16
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 67 CGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACS-SLVDEFALLVRKMW 125
CGL NLGNTC+M+A +Q + + L + + A + + L M
Sbjct: 5 CGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMD 64
Query: 126 SGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
SI P Q L + +PQF + +
Sbjct: 65 KTSSSI-PPIILLQFLHMAFPQFAEKGE 91
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 397
Score = 69.0 bits (167), Expect = 4e-15
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 67 CGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACS-----SLVDEFALLV 121
G +N+GNTC+++A +Q+L + L + N + + +S A +V E
Sbjct: 7 VGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCF 66
Query: 122 RKMWSGQYSIVHPSDFKQILGVHYPQFKD 150
+ + + V P L YPQF +
Sbjct: 67 ENLQNKSFKSVLPVVLLNTLRKCYPQFAE 95
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7,
HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 347
Score = 60.9 bits (146), Expect = 3e-12
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 65 GVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKM 124
G GL+N G TC+M++ +Q+L + L + E + S+ + ++
Sbjct: 5 GYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE----GDDSSKSVPLALQRVFYEL 60
Query: 125 WSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
+ K F +
Sbjct: 61 QHSDKPVGTKKLTKSFGWETLDSFMQHDV 89
>d2fhfa3 b.3.1.3 (A:32-162) Pullulanase PulA {Klebsiella
pneumoniae [TaxId: 573]}
Length = 131
Score = 27.2 bits (60), Expect = 0.54
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 6 TWSQDECFSTASAASSFPIPLPPPTSSD 33
W+ + C + ++ + + PT SD
Sbjct: 48 LWNNETCDALSAPVADWNDVSTTPTGSD 75
>d1u5tb1 a.4.5.54 (B:396-489) Vacuolar protein sorting-associated
protein VPS36 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 94
Score = 26.3 bits (58), Expect = 0.84
Identities = 8/51 (15%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 91 LVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQIL 141
+ E+ ++ ++ + ++ +LVD +A+ + M G ++ P + ++
Sbjct: 20 IYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIG-TGLISPMEMREAC 69
>d1gnla_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein)
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 543
Score = 25.1 bits (55), Expect = 4.8
Identities = 7/19 (36%), Positives = 9/19 (47%), Gaps = 7/19 (36%)
Query: 61 CAQRGVCG-------LRNL 72
C Q GVCG L++
Sbjct: 18 CTQVGVCGKKPETAALQDA 36
>d1uyja_ f.8.1.2 (A:) Epsilon-toxin, ETX {Clostridium perfringens
[TaxId: 1502]}
Length = 280
Score = 24.1 bits (52), Expect = 9.5
Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 8/57 (14%)
Query: 4 ENTWSQDECFSTASAASSFPIPLPPPTSSDV--------CEGPENFTGELSSLFEIS 52
NT + S I +P T+ +V +G G++S
Sbjct: 134 ANTNTNTNSKEITHNVPSQDILVPANTTVEVIAYLKKVNVKGNVKLVGQVSGSEWGE 190
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.130 0.388
Gapped
Lambda K H
0.267 0.0393 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 544,068
Number of extensions: 20852
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 12
Length of query: 154
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 76
Effective length of database: 1,336,656
Effective search space: 101585856
Effective search space used: 101585856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)