BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7185
(311 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 96/173 (55%), Gaps = 5/173 (2%)
Query: 139 PSKTMLPCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGER 198
P + C CGKSF R L H RTHTGEKP+ C C K FS L H+R H+GE+
Sbjct: 17 PGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEK 76
Query: 199 PHVCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKI 258
P+ CP C K+F+ +NL H+ TH +KP+ C CGKSF +LR H +H+G PYK
Sbjct: 77 PYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYK- 135
Query: 259 HAPSVGACGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAKSSNLKNHMTIH 311
CGKSF NL TH +H+G PYKC C K F++ L H H
Sbjct: 136 ----CPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 127 bits (320), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 83/140 (59%), Gaps = 5/140 (3%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPIC 205
C CGKSF L RH RTHTGEKP+ C C K FS ++L H+R H+GE+P+ CP C
Sbjct: 52 CPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPEC 111
Query: 206 FKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGA 265
K+F+ ++L H+ TH +KP+KC CGKSF NL TH +H+G PYK
Sbjct: 112 GKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYK-----CPE 166
Query: 266 CGKSFPTPGNLRTHSYSHSG 285
CGKSF L H +H+G
Sbjct: 167 CGKSFSRRDALNVHQRTHTG 186
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
Query: 181 FSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTP 240
F +SSS+ + GE+P+ CP C K+F+ S +L H+ TH +KP+KC CGKSF
Sbjct: 4 FGSSSSV-AQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 241 GNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAK 300
+L H +H+G PYK CGKSF NLR H +H+G PY C C K F++
Sbjct: 63 KDLTRHQRTHTGEKPYK-----CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQ 117
Query: 301 SSNLKNHMTIH 311
++L+ H H
Sbjct: 118 LAHLRAHQRTH 128
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 52/81 (64%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPIC 205
C CGKSF + + L+ H RTHTGEKP+ C C K FS +L+TH+R H+GE+P+ CP C
Sbjct: 108 CPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPEC 167
Query: 206 FKTFTASSNLYYHRITHVKDK 226
K+F+ L H+ TH K
Sbjct: 168 GKSFSRRDALNVHQRTHTGKK 188
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 54/81 (66%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPIC 205
C CGKSF + S L++H RTHTGEKP+ C C K FS SS L H+R H+GE+P+ CP C
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPEC 66
Query: 206 FKTFTASSNLYYHRITHVKDK 226
K+F+ S +L H+ TH K
Sbjct: 67 GKSFSRSDHLSRHQRTHQNKK 87
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 54/82 (65%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHVKDKPH 228
EKP+ C C K FS SS+L H+R H+GE+P+ CP C K+F+ SS+L H+ TH +KP+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 229 KCGACGKSFPTPGNLRTHSYSH 250
KC CGKSF +L H +H
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTH 83
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHS 284
+KP+KC CGKSF NL+ H +H+G PYK CGKSF +L+ H +H+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYK-----CPECGKSFSQSSDLQKHQRTHT 56
Query: 285 GSWPYKCTVCIKGFAKSSNLKNHMTIH 311
G PYKC C K F++S +L H H
Sbjct: 57 GEKPYKCPECGKSFSRSDHLSRHQRTH 83
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSWPY 256
E+P+ CP C K+F+ SSNL H+ TH +KP+KC CGKSF +L+ H +H+G PY
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 257 KIHAPSVGACGKSFPTPGNLRTHSYSH 283
K CGKSF +L H +H
Sbjct: 62 K-----CPECGKSFSRSDHLSRHQRTH 83
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKPHVC--DVCSKGFSTSSSLNTHRRIHSGERPHVCP 203
C CGK+F S LKRH HTGEKP C + C K FS +L TH RIH+G+RP+VCP
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 96
Query: 204 I--CFKTFTASSNLYYHRITHVKDK 226
C K F S+NL H +TH K K
Sbjct: 97 FDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 177 CSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHVKDKPHKC--GACG 234
C+K F +S++ H H G R HVC C K F SS L H++ H +KP +C CG
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 235 KSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHS 284
K F NLRTH H+G PY C K F NL++H +H+
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPY---VCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 205 CFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVG 264
C K F +S + H TH + H C CGK+F L+ H H+G P++ +
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC---TFE 68
Query: 265 ACGKSFPTPGNLRTHSYSHSGSWPYKCTV--CIKGFAKSSNLKNHMTIH 311
CGK F NLRTH H+G PY C C K FA+S+NLK+H+ H
Sbjct: 69 GCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 57/118 (48%), Gaps = 5/118 (4%)
Query: 138 SPSKTMLPCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGE 197
P P C K F S +++H TH G + HVC C K F SS L H+ +H+GE
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGE 60
Query: 198 RPHVCPI--CFKTFTASSNLYYHRITHVKDKPHKC--GACGKSFPTPGNLRTHSYSHS 251
+P C C K F+ NL H H D+P+ C C K F NL++H +H+
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 46/79 (58%)
Query: 174 CDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHVKDKPHKCGAC 233
C +C K F SS+L+TH IHS RP+ C C K F S++ H H +KPHKC C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 234 GKSFPTPGNLRTHSYSHSG 252
GK+F NL THS H+G
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 43/80 (53%)
Query: 144 LPCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCP 203
C +CGKSF R S L H H+ +P+ C C K F S + H IH+GE+PH C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 204 ICFKTFTASSNLYYHRITHV 223
+C K F+ SSNL H H
Sbjct: 62 VCGKAFSQSSNLITHSRKHT 81
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 36/52 (69%)
Query: 145 PCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSG 196
PC CGK F + S +K+HT HTGEKPH C VC K FS SS+L TH R H+G
Sbjct: 31 PCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 202 CPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAP 261
C IC K+F SS L H + H +P+ C CGK F +++ H++ H+G P+K
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ-- 61
Query: 262 SVGACGKSFPTPGNLRTHSYSHSG 285
CGK+F NL THS H+G
Sbjct: 62 ---VCGKAFSQSSNLITHSRKHTG 82
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 230 CGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHSGSWPY 289
C CGKSF L TH HS + PY CGK F +++ H++ H+G P+
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPY-----PCQYCGKRFHQKSDMKKHTFIHTGEKPH 58
Query: 290 KCTVCIKGFAKSSNLKNHMTIH 311
KC VC K F++SSNL H H
Sbjct: 59 KCQVCGKAFSQSSNLITHSRKH 80
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 43/80 (53%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPIC 205
C VCGK F R LK H R HTG KP+ C C + SSSLN H RIHS ERP C IC
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 206 FKTFTASSNLYYHRITHVKD 225
SS L H +H D
Sbjct: 71 PYASRNSSQLTVHLRSHTGD 90
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 40/82 (48%)
Query: 171 PHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHVKDKPHKC 230
PH C+VC K FS L TH R H+G +P+ C C SS+L H H ++P KC
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 231 GACGKSFPTPGNLRTHSYSHSG 252
C + L H SH+G
Sbjct: 68 QICPYASRNSSQLTVHLRSHTG 89
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 227 PHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHSGS 286
PHKC CGK F L+TH H+G PYK C + +L H HS
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKT-----CDYAAADSSSLNKHLRIHSDE 62
Query: 287 WPYKCTVCIKGFAKSSNLKNHMTIH 311
P+KC +C SS L H+ H
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSH 87
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 26/60 (43%)
Query: 199 PHVCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKI 258
PH C +C K F+ L H H KP+KC C + +L H HS P+K
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 44/82 (53%)
Query: 145 PCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPI 204
P C + F R + L RH R HTG+KP C +C + FS S L TH R H+GE+P C I
Sbjct: 8 PVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 205 CFKTFTASSNLYYHRITHVKDK 226
C + F S H H++ K
Sbjct: 68 CGRKFARSDERKRHTKIHLRQK 89
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 169 EKPHVCDV--CSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHVKDK 226
E+P+ C V C + FS S+ L H RIH+G++P C IC + F+ S +L H TH +K
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 227 PHKCGACGKSFPTPGNLRTHSYSH 250
P C CG+ F + H+ H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 225 DKPHKC--GACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYS 282
++P+ C +C + F L H H+G P++ C ++F +L TH +
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQ-----CRICMRNFSRSDHLTTHIRT 56
Query: 283 HSGSWPYKCTVCIKGFAKSSNLKNHMTIH 311
H+G P+ C +C + FA+S K H IH
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 197 ERPHVCPI--CFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSW 254
ERP+ CP+ C + F+ S+ L H H KP +C C ++F +L TH +H+G
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 255 PYKIHAPSVGACGKSFPTPGNLRTHSYSH 283
P+ + CG+ F + H+ H
Sbjct: 62 PF-----ACDICGRKFARSDERKRHTKIH 85
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 44/82 (53%)
Query: 145 PCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPI 204
P C + F R + L RH R HTG+KP C +C + FS S L TH R H+GE+P C I
Sbjct: 8 PVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 205 CFKTFTASSNLYYHRITHVKDK 226
C + F S H H++ K
Sbjct: 68 CGRKFARSDERKRHTKIHLRQK 89
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 169 EKPHVCDV--CSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHVKDK 226
E+P+ C V C + FS S+ L H RIH+G++P C IC + F+ S +L H TH +K
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 227 PHKCGACGKSFPTPGNLRTHSYSH 250
P C CG+ F + H+ H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 225 DKPHKC--GACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYS 282
++P+ C +C + F +L H H+G P++ C ++F +L TH +
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQ-----CRICMRNFSRSDHLTTHIRT 56
Query: 283 HSGSWPYKCTVCIKGFAKSSNLKNHMTIH 311
H+G P+ C +C + FA+S K H IH
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 197 ERPHVCPI--CFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSW 254
ERP+ CP+ C + F+ S++L H H KP +C C ++F +L TH +H+G
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 255 PYKIHAPSVGACGKSFPTPGNLRTHSYSH 283
P+ + CG+ F + H+ H
Sbjct: 62 PF-----ACDICGRKFARSDERKRHTKIH 85
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 43/82 (52%)
Query: 145 PCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPI 204
P C + F R L RH R HTG+KP C +C + FS S L TH R H+GE+P C I
Sbjct: 8 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 205 CFKTFTASSNLYYHRITHVKDK 226
C + F S H H++ K
Sbjct: 68 CGRKFARSDERKRHTKIHLRQK 89
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 169 EKPHVCDV--CSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHVKDK 226
E+P+ C V C + FS S L H RIH+G++P C IC + F+ S +L H TH +K
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 227 PHKCGACGKSFPTPGNLRTHSYSH 250
P C CG+ F + H+ H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 225 DKPHKC--GACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYS 282
++P+ C +C + F L H H+G P++ C ++F +L TH +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQ-----CRICMRNFSRSDHLTTHIRT 56
Query: 283 HSGSWPYKCTVCIKGFAKSSNLKNHMTIH 311
H+G P+ C +C + FA+S K H IH
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 197 ERPHVCPI--CFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSW 254
ERP+ CP+ C + F+ S L H H KP +C C ++F +L TH +H+G
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 255 PYKIHAPSVGACGKSFPTPGNLRTHSYSH 283
P+ + CG+ F + H+ H
Sbjct: 62 PF-----ACDICGRKFARSDERKRHTKIH 85
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 11/145 (7%)
Query: 149 CGKSFDRPSLLKRHTRTHTGEKPHVC--DVCSKGFSTSSSLNTHRRIHSGERPHVCPI-- 204
CG ++++ L+ H HTGEKP C + C KGF++ L H H+GE+ C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 205 CFKTFTASSNL--YYHRITHVKDKPHKC--GACGKSFPTPGNLRTHSYSHSGSWPYKIHA 260
C FT +N+ +++R ++K + C CGK+F L+ H +SH+ PY+
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYE--C 137
Query: 261 PSVGACGKSFPTPGNLRTHSYSHSG 285
P G C K F P L+ H H+G
Sbjct: 138 PHEG-CDKRFSLPSRLKRHEKVHAG 161
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 256 YKIHAPSVGACGKSFPTPGNLRTHSYSHSGSWPYKCTV--CIKGFAKSSNLKNHMTIH 311
YK + S CG ++ L+ H H+G P+ C C KGF +L H H
Sbjct: 10 YKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 67
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 45/87 (51%)
Query: 138 SPSKTMLPCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGE 197
S +K C CG+ F + L H RTHT E+P+ CD+C K F L HR IHS E
Sbjct: 12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKE 71
Query: 198 RPHVCPICFKTFTASSNLYYHRITHVK 224
+P C C K F S L H+ H++
Sbjct: 72 KPFKCQECGKGFCQSRTLAVHKTLHMQ 98
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 42/82 (51%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHVKDKPH 228
+K +C C + F+ S +L H R H+ ERP+ C IC K F +L HR H K+KP
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 229 KCGACGKSFPTPGNLRTHSYSH 250
KC CGK F L H H
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLH 96
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 230 CGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHSGSWPY 289
C CG+ F NL H +H+ PY + C K+F +LR H Y HS P+
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPY-----TCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 290 KCTVCIKGFAKSSNLKNHMTIH 311
KC C KGF +S L H T+H
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLH 96
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 201 VCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHA 260
+C C + FT S NL H TH ++P+ C C K+F +LR H Y HS P+K
Sbjct: 19 ICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK--- 75
Query: 261 PSVGACGKSFPTPGNLRTHSYSH 283
CGK F L H H
Sbjct: 76 --CQECGKGFCQSRTLAVHKTLH 96
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 149 CGKSFDRPSLLKRHTRTHTGEKPHVCDV--CSKGFSTSSSLNTHRRIHSGERPHVCPICF 206
C K + + S L+ H+R HTGEKP+ CD C + FS S L H+R H+G +P C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 207 KTFTASSNLYYHRITHVKDKPHKCG--ACGKSFPTPGNLRTHSYSH 250
+ F+ S +L H TH +KP C +C K F L H H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 11/123 (8%)
Query: 195 SGERPHVC--PICFKTFTASSNLYYHRITHVKDKPHKCG--ACGKSFPTPGNLRTHSYSH 250
S +RP +C P C K + S+L H H +KP++C C + F L+ H H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 251 SGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHSGSWPYKCT--VCIKGFAKSSNLKNHM 308
+G P++ C + F +L+TH+ +H+G P+ C C K FA+S L H
Sbjct: 62 TGVKPFQ-----CKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHH 116
Query: 309 TIH 311
+H
Sbjct: 117 NMH 119
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 167 TGEKPHVCDV--CSKGFSTSSSLNTHRRIHSGERPHVCPI--CFKTFTASSNLYYHRITH 222
+ ++P +C C+K + S L H R H+GE+P+ C C + F+ S L H+ H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 223 VKDKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYS 282
KP +C C + F +L+TH+ +H+G P+ PS C K F L H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPS---CQKKFARSDELVRHHNM 118
Query: 283 H 283
H
Sbjct: 119 H 119
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 42/80 (52%)
Query: 145 PCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPI 204
P C + F R L RH R HTG+KP C +C + FS S L TH R H+GE+P C I
Sbjct: 7 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 66
Query: 205 CFKTFTASSNLYYHRITHVK 224
C + F S H H++
Sbjct: 67 CGRKFARSDERKRHTKIHLR 86
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 169 EKPHVCDV--CSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHVKDK 226
E+P+ C V C + FS S L H RIH+G++P C IC + F+ S +L H TH +K
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 227 PHKCGACGKSFPTPGNLRTHSYSH 250
P C CG+ F + H+ H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 225 DKPHKC--GACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYS 282
++P+ C +C + F L H H+G P++ C ++F +L TH +
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQ-----CRICMRNFSRSDHLTTHIRT 55
Query: 283 HSGSWPYKCTVCIKGFAKSSNLKNHMTIH 311
H+G P+ C +C + FA+S K H IH
Sbjct: 56 HTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 197 ERPHVCPI--CFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSW 254
ERP+ CP+ C + F+ S L H H KP +C C ++F +L TH +H+G
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 255 PYKIHAPSVGACGKSFPTPGNLRTHSYSH 283
P+ + CG+ F + H+ H
Sbjct: 61 PF-----ACDICGRKFARSDERKRHTKIH 84
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 43/82 (52%)
Query: 145 PCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPI 204
P C + F S L RH R HTG+KP C +C + FS S L TH R H+GE+P C I
Sbjct: 8 PVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 205 CFKTFTASSNLYYHRITHVKDK 226
C + F S H H++ K
Sbjct: 68 CGRKFARSDERKRHTKIHLRQK 89
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 169 EKPHVCDV--CSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHVKDK 226
E+P+ C V C + FS SS+L H RIH+G++P C IC + F+ S +L H TH +K
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 227 PHKCGACGKSFPTPGNLRTHSYSH 250
P C CG+ F + H+ H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 197 ERPHVCPI--CFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSW 254
ERP+ CP+ C + F+ SSNL H H KP +C C ++F +L TH +H+G
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 255 PYKIHAPSVGACGKSFPTPGNLRTHSYSH 283
P+ + CG+ F + H+ H
Sbjct: 62 PF-----ACDICGRKFARSDERKRHTKIH 85
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 225 DKPHKC--GACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYS 282
++P+ C +C + F NL H H+G P++ C ++F +L TH +
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQ-----CRICMRNFSRSDHLTTHIRT 56
Query: 283 HSGSWPYKCTVCIKGFAKSSNLKNHMTIH 311
H+G P+ C +C + FA+S K H IH
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 43/82 (52%)
Query: 145 PCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPI 204
P C + F + L RH R HTG+KP C +C + FS S L TH R H+GE+P C I
Sbjct: 8 PVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 205 CFKTFTASSNLYYHRITHVKDK 226
C + F S H H++ K
Sbjct: 68 CGRKFARSDERKRHTKIHLRQK 89
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 169 EKPHVCDV--CSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHVKDK 226
E+P+ C V C + FS S SL H RIH+G++P C IC + F+ S +L H TH +K
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 227 PHKCGACGKSFPTPGNLRTHSYSH 250
P C CG+ F + H+ H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 225 DKPHKC--GACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYS 282
++P+ C +C + F G+L H H+G P++ C ++F +L TH +
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRI-----CMRNFSRSDHLTTHIRT 56
Query: 283 HSGSWPYKCTVCIKGFAKSSNLKNHMTIH 311
H+G P+ C +C + FA+S K H IH
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 197 ERPHVCPI--CFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSW 254
ERP+ CP+ C + F+ S +L H H KP +C C ++F +L TH +H+G
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 255 PYKIHAPSVGACGKSFPTPGNLRTHSYSH 283
P+ + CG+ F + H+ H
Sbjct: 62 PF-----ACDICGRKFARSDERKRHTKIH 85
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 42/80 (52%)
Query: 145 PCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPI 204
P C + F R L RH R HTG+KP C +C + FS S L TH R H+GE+P C I
Sbjct: 8 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 67
Query: 205 CFKTFTASSNLYYHRITHVK 224
C + F S H H++
Sbjct: 68 CGRKFARSDERKRHTKIHLR 87
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 169 EKPHVCDV--CSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHVKDK 226
E+P+ C V C + FS S L H RIH+G++P C IC + F+ S +L H TH +K
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 227 PHKCGACGKSFPTPGNLRTHSYSH 250
P C CG+ F + H+ H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 225 DKPHKC--GACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYS 282
++P+ C +C + F L H H+G P++ C ++F +L TH +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQ-----CRICMRNFSRSDHLTTHIRT 56
Query: 283 HSGSWPYKCTVCIKGFAKSSNLKNHMTIH 311
H+G P+ C +C + FA+S K H IH
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 197 ERPHVCPI--CFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSW 254
ERP+ CP+ C + F+ S L H H KP +C C ++F +L TH +H+G
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 255 PYKIHAPSVGACGKSFPTPGNLRTHSYSH 283
P+ + CG+ F + H+ H
Sbjct: 62 PF-----ACDICGRKFARSDERKRHTKIH 85
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%)
Query: 145 PCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPI 204
P C + F + + L H R HTG+KP C +C + FS +SLN H R H+GE+P C I
Sbjct: 8 PVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDI 67
Query: 205 CFKTFTASSNLYYHRITHVKDK 226
C + F H H++ K
Sbjct: 68 CGRKFATLHTRTRHTKIHLRQK 89
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 169 EKPHVCDV--CSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHVKDK 226
E+P+ C V C + FS ++L+TH RIH+G++P C IC + F+ ++L H TH +K
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 227 PHKCGACGKSFPT 239
P C CG+ F T
Sbjct: 62 PFACDICGRKFAT 74
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 197 ERPHVCPI--CFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSW 254
ERP+ CP+ C + F+ +NL H H KP +C C ++F +L H +H+G
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 255 PYKIHAPSVGACGKSFPT 272
P+ + CG+ F T
Sbjct: 62 PF-----ACDICGRKFAT 74
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 225 DKPHKC--GACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYS 282
++P+ C +C + F NL TH H+G P++ C ++F +L H +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQ-----CRICMRNFSQQASLNAHIRT 56
Query: 283 HSGSWPYKCTVCIKGFAKSSNLKNHMTIH 311
H+G P+ C +C + FA H IH
Sbjct: 57 HTGEKPFACDICGRKFATLHTRTRHTKIH 85
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 202 CPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAP 261
CP C K F + L H H +KP +C CGK + NL H + + ++
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 262 SVGACGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAKSSNLKNHM 308
SV C ++F LR H SH+G PYKC+ C + F + +L++HM
Sbjct: 70 SV--CQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 144 LPCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRR---IHSGERPH 200
+ C C K F LK H R HTGEKP C C K + +L H ++ E+
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 201 VCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYS-HSG 252
C +C +TF L H ++H + P+KC +C + F +L++H HSG
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 174 CDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHVKDKPHK---C 230
C C K F + L H R H+GE+P CP C K + NL H + ++ + C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 231 GACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYS-HSG 285
C ++F LR H SH+G PYK +C + F +L++H HSG
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYK-----CSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 140 SKTMLPCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHR-RIHSG 196
S+ + C+VC ++F R L+ H +HTGE P+ C CS+ F L +H ++HSG
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 229 KCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHS---G 285
+C C K F + L+ H+ H+G P++ CGK + NL H +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFE-----CPKCGKCYFRKENLLEHEARNCMNRS 63
Query: 286 SWPYKCTVCIKGFAKSSNLKNHMTIH 311
+ C+VC + F + L+ HM H
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSH 89
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 169 EKPHVCDV--CSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHVKDK 226
E+P+ C V C + FS ++L+TH RIH+G++P C IC + F+ + L H TH +K
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 227 PHKCGACGKSFPT 239
P C CG+ F T
Sbjct: 62 PFACDICGRKFAT 74
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%)
Query: 145 PCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPI 204
P C + F + + L H R HTG+KP C +C + FS + LN H R H+GE+P C I
Sbjct: 8 PVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDI 67
Query: 205 CFKTFTASSNLYYHRITHVKDK 226
C + F H H++ K
Sbjct: 68 CGRKFATLHTRDRHTKIHLRQK 89
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 197 ERPHVCPI--CFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSW 254
ERP+ CP+ C + F+ +NL H H KP +C C ++F L H +H+G
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 255 PYKIHAPSVGACGKSFPT 272
P+ + CG+ F T
Sbjct: 62 PF-----ACDICGRKFAT 74
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 225 DKPHKC--GACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYS 282
++P+ C +C + F NL TH H+G P++ C ++F L H +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQ-----CRICMRNFSQHTGLNQHIRT 56
Query: 283 HSGSWPYKCTVCIKGFAKSSNLKNHMTIH 311
H+G P+ C +C + FA H IH
Sbjct: 57 HTGEKPFACDICGRKFATLHTRDRHTKIH 85
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 151 KSFDRPSLLKRHTRTHTGEKPHVC--DVCSKGFSTSSSLNTHRRIHSGERPHVC--PICF 206
+ F +L H R HTGEKPH C + C K +S +L TH R H+GE+P++C C
Sbjct: 47 RPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCS 106
Query: 207 KTFTASSNLYYHR-ITHVKDKPHKCG--ACGKSFPTPGNLRTH 246
K F+ +S+ H+ TH +KP+ C C K + P +LR H
Sbjct: 107 KAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
Query: 149 CGKSFDRPSLLKRHTRTHTGEKPHVC--DVCSKGFSTSSSLNTHR-RIHSGERPHVC--P 203
C KS+ R LK H R+HTGEKP++C + CSK FS +S H+ R HS E+P+VC P
Sbjct: 75 CRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLP 134
Query: 204 ICFKTFTASSNLYYH 218
C K +T S+L H
Sbjct: 135 GCTKRYTDPSSLRKH 149
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 67/152 (44%), Gaps = 19/152 (12%)
Query: 175 DVCSKGFSTSSSLNTH---RRIHSGERPHV------CPICFKTFTASSNLYYHRITHVKD 225
D CS+ F + L H IH GER C + F A L H H +
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIH-GERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 65
Query: 226 KPHKC--GACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTH-SYS 282
KPHKC C KS+ NL+TH SH+G PY C K+F + H + +
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHE---GCSKAFSNASDRAKHQNRT 122
Query: 283 HSGSWPYKCTV--CIKGFAKSSNLKNHM-TIH 311
HS PY C + C K + S+L+ H+ T+H
Sbjct: 123 HSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 149 CGKSFDRPSLLKRHTRTHTGEKPHVCDV--CSKGFSTSSSLNTHRRIHSGERPHVCPICF 206
CGK++ + S LK H RTHTGEKP+ CD C F+ S L H R H+G RP C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 207 KTFTASSNLYYHRITHV 223
+ F+ S +L H H
Sbjct: 74 RAFSRSDHLALHMKRHF 90
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 231 GACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHSGSWPYK 290
CGK++ +L+ H +H+G PY CG F L H H+G P++
Sbjct: 12 AGCGKTYTKSSHLKAHLRTHTGEKPYHC---DWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 291 CTVCIKGFAKSSNLKNHMTIH 311
C C + F++S +L HM H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 200 HVCPI--CFKTFTASSNLYYHRITHVKDKPHKC--GACGKSFPTPGNLRTHSYSHSGSWP 255
H C C KT+T SS+L H TH +KP+ C CG F L H H+G P
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 256 YKIHAPSVGACGKSFPTPGNLRTHSYSH 283
++ C ++F +L H H
Sbjct: 67 FQCQ-----KCDRAFSRSDHLALHMKRH 89
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 149 CGKSFDRPSLLKRHTRTHTGEKPHVCDV--CSKGFSTSSSLNTHRRIHSGERPHVCPICF 206
CGK++ + S LK H RTHTGEKP+ CD C F+ S L H R H+G RP C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 207 KTFTASSNLYYHRITHV 223
+ F+ S +L H H
Sbjct: 73 RAFSRSDHLALHMKRHF 89
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 231 GACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHSGSWPYK 290
CGK++ +L+ H +H+G PY CG F L H H+G P++
Sbjct: 11 AGCGKTYTKSSHLKAHLRTHTGEKPYHC---DWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 291 CTVCIKGFAKSSNLKNHMTIH 311
C C + F++S +L HM H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 200 HVCPI--CFKTFTASSNLYYHRITHVKDKPHKC--GACGKSFPTPGNLRTHSYSHSGSWP 255
H C C KT+T SS+L H TH +KP+ C CG F L H H+G P
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 256 YKIHAPSVGACGKSFPTPGNLRTHSYSH 283
++ C ++F +L H H
Sbjct: 66 FQCQ-----KCDRAFSRSDHLALHMKRH 88
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 34/50 (68%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHS 195
C CGK+F R S+L +H R HTGEKP+ C C K FS +S L H+RIH+
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITH 222
EKP+ C C K FS SS L H+R+H+GE+P+ C C K F+ +S L H+ H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHS 251
E+P+ C C K F+ SS L H+ H +KP+KC CGK+F L H H+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%)
Query: 266 CGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAKSSNLKNHMTIH 311
CGK+F L H H+G PYKC C K F+++S L NH IH
Sbjct: 20 CGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHS 284
+KP+ C CGK+F L H H+G PYK CGK+F L H H+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCL-----ECGKAFSQNSGLINHQRIHT 66
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 34/59 (57%)
Query: 141 KTMLPCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
+ C CGKSF S L +H RTHTGEKP+ CD C K F S L H R+H+G P
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 30/54 (55%)
Query: 174 CDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
CD C K FS SS L+ HRR H+GE+P+ C C K F S+L H H P
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 198 RPHVCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
R + C C K+F+ SS+L HR TH +KP+KC CGK+F +L H H+GS P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 266 CGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAKSSNLKNHMTIH 311
CGKSF +L H +H+G PYKC C K F + S+L H +H
Sbjct: 24 CGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 226 KPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHSG 285
+ +KC CGKSF +L H +H+G PYK CGK+F +L H H+G
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYK-----CDECGKAFIQRSHLIGHHRVHTG 71
Query: 286 SWP 288
S P
Sbjct: 72 SGP 74
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 138 SPSKTMLPCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGE 197
S + PC CGKSF S RH H G +P+ C VC K F L H +IH+G
Sbjct: 5 SSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Query: 198 RPHVCPICFKTFTASSNLYYH 218
+P+ C IC K F + + H
Sbjct: 64 KPYECNICAKRFMWRDSFHRH 84
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 167 TGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHVKDK 226
+G+K + C C K F+ S + H +H G RP+ C +C K F +L H H K
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 227 PHKCGACGKSF 237
P++C C K F
Sbjct: 65 PYECNICAKRF 75
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHS 284
DK + C CGKSF H H G PY G CGK F +L H H+
Sbjct: 8 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPY-----GCGVCGKKFKMKHHLVGHMKIHT 61
Query: 285 GSWPYKCTVCIKGFAKSSNLKNHMT 309
G PY+C +C K F + H+T
Sbjct: 62 GIKPYECNICAKRFMWRDSFHRHVT 86
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 195 SGERPHVCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSW 254
SG++ + C C K+FT S H H+ +P+ CG CGK F +L H H+G
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 255 PYK 257
PY+
Sbjct: 65 PYE 67
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 21/46 (45%)
Query: 266 CGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAKSSNLKNHMTIH 311
CGKSF H H G PY C VC K F +L HM IH
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 173 VCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHVK--DKPHKC 230
C++C K F LN H+ HSGE+P+ CP+C F + YH +H KP+ C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 231 GACGKSFPTPGNLRTH 246
+CGK F P +L H
Sbjct: 69 QSCGKGFSRPDHLNGH 84
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 138 SPSKTMLPCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGE 197
S + + C +CGK F L RH +H+GEKP+ C VC F ++ H R H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 198 --RPHVCPICFKTFTASSNLYYHRITHVKDKP 227
+P++C C K F+ +L H I V P
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGH-IKQVHSGP 92
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 230 CGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHSGSW-- 287
C CGK F +L H SHSG PY S CG F + H SH GS
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPY-----SCPVCGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 288 PYKCTVCIKGFAKSSNLKNHM 308
PY C C KGF++ +L H+
Sbjct: 65 PYICQSCGKGFSRPDHLNGHI 85
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 195 SGERPHVCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSW 254
SG C IC K F +L H+++H +KP+ C CG F + H SH GS
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 255 --PYKIHAPSVGACGKSFPTPGNLRTH 279
PY +CGK F P +L H
Sbjct: 63 GKPYICQ-----SCGKGFSRPDHLNGH 84
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 266 CGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAKSSNLKNHMTIH 311
CGK F +L H SHSG PY C VC F + + H+ H
Sbjct: 13 CGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 149 CGKSFDRPSLLKRHTRTHTGEKPHVC--DVCSKGFSTSSSLNTHRRIHSGERPHVCPICF 206
C K + + S LK H RTHTGEKP+ C + C F+ S L H R H+G +P C +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 207 KTFTASSNLYYHRITH 222
++F+ S +L H H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 172 HVCDV--CSKGFSTSSSLNTHRRIHSGERPHVCPI--CFKTFTASSNLYYHRITHVKDKP 227
H CD C+K ++ SS L H R H+GE+P+ C C F S L H H KP
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP 75
Query: 228 HKCGACGKSFPTPGNLRTHSYSH 250
+CG C +SF +L H H
Sbjct: 76 FQCGVCNRSFSRSDHLALHMKRH 98
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 219 RITHVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRT 278
R H D P C K + +L+ H +H+G PYK + C F L
Sbjct: 13 RRIHYCDYP----GCTKVYTKSSHLKAHLRTHTGEKPYKC---TWEGCDWRFARSDELTR 65
Query: 279 HSYSHSGSWPYKCTVCIKGFAKSSNLKNHMTIH 311
H H+G+ P++C VC + F++S +L HM H
Sbjct: 66 HYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 55.8 bits (133), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPI 204
C +C ++F R L H RTHTGEKP CD+C + F+ S HR I H+ PI
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-----HILPI 59
Score = 51.2 bits (121), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 170 KPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHR-ITHV 223
KP C +C + FS S L TH R H+GE+P C IC + F S HR I H+
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI 56
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 198 RPHVCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTH 246
+P C IC + F+ S +L H TH +KP C CG+ F + H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 266 CGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAKSSNLKNHMTIH 311
C ++F +L TH +H+G P+ C +C + FA+S K H I
Sbjct: 9 CMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54
Score = 31.6 bits (70), Expect = 0.64, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 226 KPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTH 279
KP +C C ++F +L TH +H+G P+ + CG+ F + H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPF-----ACDICGRKFARSDERKRH 50
Score = 29.6 bits (65), Expect = 2.0, Method: Composition-based stats.
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
P++C +C++ F++S +L H+ H
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTH 26
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHS 284
DKP+KC C SF GNL +H H+G PY+ + CG F P NL+TH+ HS
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCN-----ICGAQFNRPANLKTHTRIHS 69
Query: 285 GSWP 288
G P
Sbjct: 70 GEKP 73
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
C C SF L H HTGEKP+ C++C F+ ++L TH RIHSGE+P
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
++P+ C C +F NL H+ H +KP++C CG F P NL+TH+ HSG P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
+KP+ CD C F +L +H+ +H+GE+P+ C IC F +NL H H +KP
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 266 CGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAKSSNLKNHMTIH 311
C SF GNL +H H+G PY+C +C F + +NLK H IH
Sbjct: 23 CQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 229 KCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHSGSWP 288
+C GKSF L H H+G P+ P CGK F NL+ H +H+G P
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFP---GCGKIFARSENLKIHKRTHTGEKP 120
Query: 289 YKCTV--CIKGFAKSSNLKNHMTIH 311
+KC C + FA SS+ K HM +H
Sbjct: 121 FKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 54/120 (45%), Gaps = 13/120 (10%)
Query: 145 PCTVCGKSFDRPSLLKRH-TRTHTG---EKPHVC--DVC---SKGFSTSSSLNTHRRIHS 195
P C ++F L H T H G + HVC + C K F L H R+H+
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Query: 196 GERPHVCPI--CFKTFTASSNLYYHRITHVKDKPHKC--GACGKSFPTPGNLRTHSYSHS 251
GE+P CP C K F S NL H+ TH +KP KC C + F + + H + H+
Sbjct: 87 GEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 144 LPCTV--CGKSFDRPSLLKRHTRTHTGEKPHVCDV--CSKGFSTSSSLNTHRRIHSGER 198
PC CGK F R LK H RTHTGEKP C+ C + F+ SS H +H+ ++
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%)
Query: 168 GEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
G ++C VC + + +SL H IHS E+ + C C K F + H I H ++
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 228 HKCGACGKSFPTPGNLRTH 246
++C ACGKSF + +H
Sbjct: 79 YQCLACGKSFINYQFMSSH 97
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPIC 205
C VC +S+ + L+RH H+ EK + C C K F + H H+GER + C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 206 FKTF 209
K+F
Sbjct: 85 GKSF 88
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 193 IHSGERPHVCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHSG 252
I G ++C +C +++ ++L H H +K + C C K FP H H+G
Sbjct: 16 IVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTG 75
Query: 253 SWPYKIHAPSVGACGKSFPTPGNLRTH 279
Y+ ACGKSF + +H
Sbjct: 76 ERRYQ-----CLACGKSFINYQFMSSH 97
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 230 CGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHSGSWPY 289
C C +S+ +LR H HS Y C K FP H H+G Y
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKY-----PCRYCEKVFPLAEYRTKHEIHHTGERRY 79
Query: 290 KCTVCIKGFAKSSNLKNHM 308
+C C K F + +H+
Sbjct: 80 QCLACGKSFINYQFMSSHI 98
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 145 PCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTH-RRIHSGE 197
PC C K F +H HTGE+ + C C K F +++H + +HS +
Sbjct: 52 PCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQD 105
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTH-RRIHSG 196
C VC ++F R LKRH R+HT EKP+ C +C++ F+ L H ++IHSG
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 173 VCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYH 218
VC+VC++ F+ L H R H+ E+P+ C +C + FT L H
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 201 VCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYS-HSGSW 254
VC +C + F +L H +H +KP+ CG C ++F L H+ HSG+
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 266 CGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAKSSNLKNH 307
C ++F +L+ H SH+ PY C +C + F + L H
Sbjct: 8 CTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 230 CGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYS-HSGSW 287
C C ++F +L+ H SH+ PY G C ++F L H+ HSG+
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPY-----PCGLCNRAFTRRDLLIRHAQKIHSGNL 58
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 28/51 (54%)
Query: 145 PCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHS 195
P C + F R L RH R HTG+KP C +C + FS S L TH R H+
Sbjct: 23 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 170 KPHVCDV--CSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITH 222
+P+ C V C + FS S L H RIH+G++P C IC + F+ S +L H TH
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 259 HAPSVGACGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAKSSNLKNHMTIH 311
+A V +C + F L H H+G P++C +C++ F++S +L H+ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 198 RPHVCPI--CFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHS 251
RP+ CP+ C + F+ S L H H KP +C C ++F +L TH +H+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P C+ C K + +S L+ HRR H G RP CP C K F S + H H ++KP
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH-QNKP 59
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGE 197
C CGK++ S L RH R H G +P C C K F S +N H ++H +
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHS 251
ERP C C KT+ +S L HR H+ +P C CGK F + H H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 266 CGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAKSSNLKNHMTIH 311
CGK++ L H +H G P C C K F S + H+ +H
Sbjct: 10 CGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 149 CGKSFDRPSLLKRHTRTHTGEKPHVCD--VCSKGFSTSSSLNTHRRIH 194
CGK++ + S LK HTRTHTGEKP C C + F+ S L+ HRR H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 170 KPHVCD--VCSKGFSTSSSLNTHRRIHSGERPHVCPI--CFKTFTASSNLYYHRITH 222
+ H+C C K + SS L H R H+GE+P C C + F S L HR TH
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 265 ACGKSFPTPGNLRTHSYSHSGSWPYKCT--VCIKGFAKSSNLKNHMTIH 311
CGK++ +L+ H+ +H+G P+ C+ C + FA+S L H H
Sbjct: 24 GCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 198 RPHVC--PICFKTFTASSNLYYHRITHVKDKPHKCG--ACGKSFPTPGNLRTHSYSH 250
R H+C P C KT+ SS+L H TH +KP C C + F L H +H
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ CDVC K FS +SL H+R+HSGE+P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C VC K+F + L +H R H+GEKP
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P+ C +C K F+ ++L H+ H +KP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PY+C VC K F+ ++L H +H
Sbjct: 12 PYECDVCRKAFSHHASLTQHQRVH 35
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+VCD C K F S+ L H+RIH+GE+P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK+F + L RH R HTGEKP
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P+VC C K F S+ L H+ H +KP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 167 TGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
T EKP CD C K F S+LN+HR IH+GE+P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P C C K+F S L HR+ H +KP
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C C KSF + S L H HTGEKP
Sbjct: 15 CDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
P++C C K F + S L +H IH
Sbjct: 12 PFRCDTCDKSFRQRSALNSHRMIH 35
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 145 PCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIH 194
C+ CGK F L H RTHTGEKP+ C+ C + +SL H H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 168 GEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHVK 224
G C C K F ++ LN H R H+GE+P+ C C ++L YH H K
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 266 CGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAKSSNLKNHMTIH 311
CGK F + L H +H+G PYKC C A+ ++L+ H+ H
Sbjct: 10 CGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 202 CPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTH 246
C C K F ++ L H TH +KP+KC C + +LR H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 229 KCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKS 269
+C CGK F + L H +H+G PYK A K+
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKT 46
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ CDVC K F SSL H+RIH+GE+P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 16/26 (61%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C VC KSF S L H R HTGEKP
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P+ C +C K+F S+L H+ H +KP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PYKC VC K F S+L H IH
Sbjct: 12 PYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP+KC C KSF +L H H+G P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 149 CGKSFDRPSLLKRHTRTHTGEKPHVC--DVCSKGFSTSSSLNTHRRIHSGERPHVCPI-- 204
CG ++++ L+ H HTGEKP C + C KGF++ L H H+GE+ C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 205 CFKTFTASSNL--YYHRITHVK 224
C FT +N+ +++R ++K
Sbjct: 71 CDLRFTTKANMKKHFNRFHNIK 92
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 170 KPHVCDV--CSKGFSTSSSLNTHRRIHSGERPHVCPI--CFKTFTASSNLYYHRITHVKD 225
K ++C C ++ + L H H+GE+P C C K FT+ +L H +TH +
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 226 KPHKCGA--CGKSFPTPGNLRTH 246
K C + C F T N++ H
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKH 84
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 144 LPCTV--CGKSFDRPSLLKRHTRTHTGEKPHVCDV--CSKGFSTSSSLNTH-RRIHS 195
PC C K F L RH+ THTGEK CD C F+T +++ H R H+
Sbjct: 34 FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHN 90
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 233 CGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHSGSWPYKCT 292
CG ++ L+ H H+G P+ C K F + +L HS +H+G + C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEE---GCEKGFTSLHHLTRHSLTHTGEKNFTCD 67
Query: 293 V--CIKGFAKSSNLKNHM 308
C F +N+K H
Sbjct: 68 SDGCDLRFTTKANMKKHF 85
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 198 RPHVCPI--CFKTFTASSNLYYHRITHVKDKPHKCG--ACGKSFPTPGNLRTHSYSHSGS 253
+ ++C C + + L H H +KP C C K F + +L HS +H+G
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 254 WPYKIHAPSVGACGKSFPTPGNLRTH 279
+ + C F T N++ H
Sbjct: 62 KNFTCDSD---GCDLRFTTKANMKKH 84
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 262 SVGACGKSFPTPGNLRTHSYSHSGSWPYKCTV--CIKGFAKSSNLKNHMTIH 311
S CG ++ L+ H H+G P+ C C KGF +L H H
Sbjct: 7 SFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 58
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP++C+ C K F S LN HRRIH+GE+P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 18/26 (69%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGKSF + S L RH R HTGEKP
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P++C C K+F S+L HR H +KP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP+ C CGKSF +L H H+G P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 167 TGEKPHVCDVCSKGFSTSSSLNTHRRIHSGE 197
+GEKP+VC C K F+ SS L+ HRR+H+GE
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 195 SGERPHVCPICFKTFTASSNLYYHRITHVKD 225
SGE+P+VC C K FT SS L HR H +
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGE 169
C CGK+F + S L H R HTGE
Sbjct: 13 CQECGKAFTQSSCLSIHRRVHTGE 36
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 284 SGSWPYKCTVCIKGFAKSSNLKNHMTIH 311
SG PY C C K F +SS L H +H
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVH 33
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EK + CDVC K FS SS L TH+R+H+GE+P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C VCGK F + S L+ H R HTGEKP
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 289 YKCTVCIKGFAKSSNLKNHMTIH 311
YKC VC K F++SS+L+ H +H
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVH 35
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+K +KC CGK F +L+TH H+G P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+ + C +C K F+ SS+L H+ H +KP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRR 192
C CG +PS+LK+H RTHT +P+ C C+ F T +L H +
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 266 CGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAKSSNLKNHM 308
CG P L+ H +H+ PY CT C F NL HM
Sbjct: 7 CGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 172 HVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHVKDKPH 228
++C+ C S L H R H+ RP+ C C +F NL H+K K H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNL----TKHMKSKAH 54
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 230 CGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHSGS 286
C CG P L+ H +H+ PY C SF T GNL H S + S
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPY-----HCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 200 HVCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHSGS 253
++C C S L H TH +P+ C C SF T GNL H S + S
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP C C K FS SS L TH+RIH+GE+P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 16/26 (61%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGKSF S L H R HTGEKP
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP +C CGKSF L TH H+G P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P C C K+F+ SS L H+ H +KP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
P++C C K F+ SS L H IH
Sbjct: 12 PFECAECGKSFSISSQLATHQRIH 35
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 167 TGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
+G+KP VC+ C K F SS L+ H+RIHSGE+P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 138 SPSKTMLPCTVCGKSFDRPSLLKRHTRTHTGEKP 171
S K L C CGK+F + S L +H R H+GEKP
Sbjct: 5 SSGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 195 SGERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
SG++P VC C KTF SS L H+ H +KP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C+ C K FS +S L H+RIH+GE+P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK+F + S L RH R HTGEKP
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PYKC C K F+++S L H IH
Sbjct: 12 PYKCNECGKAFSQTSKLARHQRIH 35
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP+KC CGK+F L H H+G P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P+ C C K F+ +S L H+ H +KP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C VC K FS SL+ H+RIHSG++P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C+VCGK+F L H R H+G+KP
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP++C CGK+F +L H HSG P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PY+C+VC K F+ +L H IH
Sbjct: 12 PYECSVCGKAFSHRQSLSVHQRIH 35
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P+ C +C K F+ +L H+ H KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 170 KPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
KP++C+ C K FS SSL TH+ IH+GE+P
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK+F S L H HTGEKP
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 226 KPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
KP+ C CGK+F +L TH H+G P
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 198 RPHVCPICFKTFTASSNLYYHRITHVKDKP 227
+P++C C K F+ S+L H++ H +KP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 25/31 (80%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C+ C KG+++ +L+ H+++H+GERP
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP+KC CGK + + NL H H+G P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK ++ L H + HTGE+P
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PYKC C KG+ NL H +H
Sbjct: 12 PYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P+ C C K + + NL H+ H ++P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C+ C K FS SSL TH+ IH+G++P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP++C CGK+F +L TH H+G P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P+ C C K F+ S+L H+ H KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK+F S L H HTG+KP
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PY+C C K F+ S+L H IH
Sbjct: 12 PYECNQCGKAFSVRSSLTTHQAIH 35
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
E+P++C VC K F+ S+L H++IH+GE+P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
ERP++C +C K FT SNL H+ H +KP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 19/26 (73%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
CTVCGK+F S L +H + HTGEKP
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 14/24 (58%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PY CTVC K F SNL H IH
Sbjct: 12 PYICTVCGKAFTDRSNLIKHQKIH 35
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
++P+ C CGK+F NL H H+G P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP C C KGFS S+LN H ++H+GE+P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK F R S L H + HTGEKP
Sbjct: 15 CVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
P+KC C KGF++ S L H +H
Sbjct: 12 PFKCVECGKGFSRRSALNVHHKLH 35
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C +C K F+ S L+ H++IH+GE+P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C++CGKSF + S L H + HTGEKP
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P+ C IC K+FT S L+ H+ H +KP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP++C CGKSF L H H+G P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PY+C++C K F K S L H IH
Sbjct: 12 PYECSICGKSFTKKSQLHVHQQIH 35
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 149 CGKSFDRPSLLKRHTRTHTGEKPHVC--DVCSKGFSTSSSLNTHRRIHSG 196
CGK+F + + LK H +HT + P+ C + C K FS S L H ++H+G
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 233 CGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHSG 285
CGK+F L+ H +SH+ PY+ P G C K F P L+ H H+G
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYE--CPHEG-CDKRFSLPSRLKRHEKVHAG 58
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 266 CGKSFPTPGNLRTHSYSHSGSWPYKC--TVCIKGFAKSSNLKNHMTIH 311
CGK+F L+ H +SH+ PY+C C K F+ S LK H +H
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 205 CFKTFTASSNLYYHRITHVKDKPHKC--GACGKSFPTPGNLRTHSYSHSG 252
C K F + L H+ +H + P++C C K F P L+ H H+G
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 149 CGKSFDRPSLLKRHTRTHTGEKPHVC--DVCSKGFSTSSSLNTHRRIHSG 196
CGK+F + + LK H +HT + P+ C + C K FS S L H ++H+G
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 233 CGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHSG 285
CGK+F L+ H +SH+ PY+ P G C K F P L+ H H+G
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYE--CPHEG-CDKRFSLPSRLKRHEKVHAG 58
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 266 CGKSFPTPGNLRTHSYSHSGSWPYKC--TVCIKGFAKSSNLKNHMTIH 311
CGK+F L+ H +SH+ PY+C C K F+ S LK H +H
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 205 CFKTFTASSNLYYHRITHVKDKPHKC--GACGKSFPTPGNLRTHSYSHSG 252
C K F + L H+ +H + P++C C K F P L+ H H+G
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C C K F+ ++L H+RIH+GE+P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP++CG CGK+F NL H H+G P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK+F + + L +H R HTGEKP
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PY+C C K FA+ +NL H IH
Sbjct: 12 PYRCGECGKAFAQKANLTQHQRIH 35
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P+ C C K F +NL H+ H +KP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C VC K F SS L H +HSGERP
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PYKC VC K F SS+L H ++H
Sbjct: 12 PYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP+KC CGK+F +L H HSG P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C VCGK+F S L +H H+GE+P
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P+ C +C K F SS+L H H ++P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 170 KPHVCDVCSKGFSTSSSLNTH-RRIHSGERPHVCPI 204
KP++C C KGFS LN H +++H+ ERPH C +
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 146 CTVCGKSFDRPSLLKRHTR-THTGEKPHVCDVCSKGFSTS 184
C CGK F RP L H + HT E+PH C V G S+
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSSG 54
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 198 RPHVCPICFKTFTASSNLYYH-RITHVKDKPHKC 230
+P++C C K F+ +L H + H ++PHKC
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKPH C C K FS +S L H+RIH+GE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGKSF S L H R HTGE P
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KPH+C CGKSF L H H+G P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+PH C C K+F+ +S L H+ H + P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 167 TGEKPHVCDVCSKGFSTSSSLNTHRRIHSGER 198
+GEKP+ C+ C K FS+ S L H+RIH+GE+
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 14/25 (56%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEK 170
C CGK F S L H R HTGEK
Sbjct: 13 CNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 195 SGERPHVCPICFKTFTASSNLYYHRITHVKDK 226
SGE+P+ C C K F++ S L H+ H +K
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVG 264
+KP+ C CGK F + L H H+G K+ PS G
Sbjct: 8 EKPYGCNECGKDFSSKSYLIVHQRIHTGE---KLSGPSSG 44
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP C C K FS LN HRRIH+GE+P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK+F L +H R HTGEKP
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP C+ C KGF T+S +H+R HSGE+P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVG 264
+KP KC CGK F T +H SHSG P PS G
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP---SGPSSG 46
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 144 LPCTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK F S H R+H+GEKP
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P C C K F +S Y H+ +H +KP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 170 KPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
K H C C +GF+ S LN H+RIH+GE+P
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CG+ F S L +H R HTGEKP
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 170 KPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
KP+ C+ C K FS +S L H+R+H+GE+P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK+F + S L RH R HTGEKP
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PY+C C K F+++S L H +H
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVH 35
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 226 KPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
KP++C CGK+F L H H+G P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 198 RPHVCPICFKTFTASSNLYYHRITHVKDKP 227
+P+ C C K F+ +S L H+ H +KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C+ C K F S L H+RIH+GE+P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK+F S L+ H R HTGEKP
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP+ C CGK+F L+ H H+G P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P+ C C K F S L H+ H +KP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PY C C K F S L+ H IH
Sbjct: 12 PYNCEECGKAFIHDSQLQEHQRIH 35
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP C+ C K F+ +S L++H+R+H+GE+P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK F + S L H R HTGEKP
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P C C K FT +S L+ H+ H +KP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVG 264
+KP KC CGK F L +H H+G P PS G
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKPS---GPSSG 46
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C VCSK F+ + L H++ H+GE+P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C VC K+F + + L +H +THTGEKP
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P+ C +C K FT ++L H+ TH +KP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP++C C K+F +L H +H+G P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PY+C VC K F + ++L H H
Sbjct: 12 PYECKVCSKAFTQKAHLAQHQKTH 35
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C C K F+ S+L TH++IH+GE+P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P+ C C K FT SNL+ H+ H +KP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP++C CGK+F NL TH H+G P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK+F S L H + HTGEKP
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PY+C C K F SNL H IH
Sbjct: 12 PYRCAECGKAFTDRSNLFTHQKIH 35
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C C K F + LN HRRIH+G RP
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C+ CGK+F R + L H R HTG +P
Sbjct: 15 CSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PYKC+ C K F + ++L H IH
Sbjct: 12 PYKCSECGKAFHRHTHLNEHRRIH 35
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVG 264
+KP+KC CGK+F +L H H+G Y+ PS G
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTG---YRPSGPSSG 46
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 167 TGEKPHVCDVCSKGFSTSSSLNTHRRIHSGE 197
+G+KP+VC+ C K F S L H RIH+GE
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 195 SGERPHVCPICFKTFTASSNLYYHRITHVKD 225
SG++P+VC C K F S L H H +
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGE 169
C CGK+F S L H R HTGE
Sbjct: 13 CNECGKAFGLKSQLIIHERIHTGE 36
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
E+PH C+ C K F S+ L H+RIH+GE+P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGKSF + + L +H R HTGEKP
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
ERPH C C K+F S++L H+ H +KP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
++PHKC CGKSF +L H H+G P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C+ C K F S+L TH+ IH+GE+P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP+KC CGK+F NL TH H+G P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P+ C C K F A SNL H++ H +KP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 13/24 (54%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PYKC C K F SNL H IH
Sbjct: 12 PYKCNECGKAFRAHSNLTTHQVIH 35
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK+F S L H HTGEKP
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 164 RTHTGEKPHVCDVCSKGFSTSSSLNTH-RRIHSGE---RPHVCPICFKTFTASSNLYYH 218
RTHTGEKP+ C C K F L+ H +R H VC C KTFT + + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP C+ C K F+ +S L++H+R+H+GE+P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK F + S L H R HTGEKP
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P C C K FT +S+L+ H+ H +KP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVG 264
+KP +C CGK F +L +H H+G P PS G
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKPS---GPSSG 46
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C C K FS ++ L H+R+H+GE+P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK+F + + L +H R HTGEKP
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P+ C C K F+ +++L H+ H +KP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP++C CGK+F +L H H+G P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PY+C C K F+++++L H +H
Sbjct: 12 PYECKECGKAFSQTTHLIQHQRVH 35
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 19/26 (73%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK+F + S+L H RTHTGEKP
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C+ C K FS S L+ H+R H+GE+P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P+ C C KTF+ S L H+ TH +KP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP+ C CGK+F L H +H+G P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP C C K F+T S+L H+R H+GE+P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C+ C K+F+ S L H RTHTGEKP
Sbjct: 15 CSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P C C K F SNL H+ TH +KP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVG 264
+KP +C C K+F T NL H +H+G P PS G
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKPS---GPSSG 46
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C C K FS+ S L H R HSGE+P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C+ CGK+F S L H RTH+GEKP
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P+ C C K F++ S L H TH +KP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP+ C CGK+F + L H +HSG P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C+ C K F+ +S L H RIH+GE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK F + S L H R HTGEKP
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PYKC C K F ++S+L NH IH
Sbjct: 12 PYKCNECGKVFTQNSHLTNHWRIH 35
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P+ C C K FT +S+L H H +KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP+KC CGK F +L H H+G P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 167 TGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
+GEKP+ C C K FS SL H R+H+G P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP++C CGKSF G+L H H+GS P
Sbjct: 8 EKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 195 SGERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
SGE+P+ C C K+F+ +L H H P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGKSF + L H R HTG P
Sbjct: 13 CKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 284 SGSWPYKCTVCIKGFAKSSNLKNHMTIH 311
SG PY+C C K F++ +L H +H
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLH 33
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 251 SGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHSGSWP 288
SG PY+ CGKSF G+L H H+GS P
Sbjct: 6 SGEKPYQCKE-----CGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C+ C K F SSL H+ HSGE+P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP+KC CGK+F +L H +HSG P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P+ C C K F A S+L H+ TH +KP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK+F S L H TH+GEKP
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C C K F +SS H+R+H+G+RP
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK+F S +H R HTG++P
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 167 TGEKPHVCDVCSKGFSTSSSLNTHRRIHSGE 197
+GEKP+VC C K F S TH RIH+GE
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGE 169
CT CGK+F R S H R HTGE
Sbjct: 13 CTECGKAFIRKSHFITHERIHTGE 36
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 284 SGSWPYKCTVCIKGFAKSSNLKNHMTIH 311
SG PY CT C K F + S+ H IH
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIH 33
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 195 SGERPHVCPICFKTFTASSNLYYHRITHVKD 225
SGE+P+VC C K F S+ H H +
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C+ C K F +S L+ H+RIH+GE+P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 16/26 (61%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK F S L RH R HTGEKP
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGE 197
EKP+ C+ C K F+T S+L H+R H+GE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSG 252
+KP++C C K+F T NL H +H+G
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTG 37
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKD 225
E+P+ C C K F SNL H+ TH +
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGE 169
C C K+F+ S L H RTHTGE
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGE 38
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 144 LPCTVCGKSFDRPSLLKRHTRTHTGEKP 171
CT CGK+F R S L H + HTGEKP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 174 CDVCSKGFSTSSSLNTHRRIHSGERP 199
C C K F+ S+L+ H++IH+GE+P
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C C K F +S L H+R+HSGE+P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGKSF S L +H R H+GEKP
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP+ C CGKSF L H HSG P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P+ C C K+F +S L H+ H +KP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ CD C K FS SL H R+H+G P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP++C CGK+F G+L H H+GS P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK+F + L H R HTG P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C+ C K F+ +S L HR IH+GE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK F + S L RH HTGEKP
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P+ C C K FT +S+L HR H +KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PYKC C K F ++S+L H IH
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIH 35
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP+KC CGK F +L H H+G P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 174 CDVCSKGFSTSSSLNTHRRIHSGERP 199
C+ C K F+ SSSL H+RIH+GE+P
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 141 KTMLPCTVCGKSFDRPSLLKRHTRTHTGEKP 171
K + C C K+F + S L H R HTGEKP
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 202 CPICFKTFTASSNLYYHRITHVKDKP 227
C C KTFT SS+L H+ H +KP
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C C K F S L+ H+RIH+GE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C+ CGKSF + S L H R HTGE P
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP++C CGKSF L H H+G P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P+ C C K+F S L+ H+ H + P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PY+C+ C K F K S L H IH
Sbjct: 12 PYECSDCGKSFIKKSQLHVHQRIH 35
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
++P+ C C K F T SSL HRR H+GE+P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK+F S L H R+HTGEKP
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
+RP+ C C K F S+L HR +H +KP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+P++C CGK+F T +L H SH+G P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP CD+C K F S LN H +H+ E+P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C +CGKSF S L RH+ HT EKP
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P C IC K+F S L H + H +KP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP KC CGKSF L HS H+ P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
P+KC +C K F S L H +H
Sbjct: 12 PFKCDICGKSFCGRSRLNRHSMVH 35
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C+ C KGF L TH +H+GE+P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P+ C C K F +LY H + H +KP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP+KC CGK F +L TH H+G P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 167 TGEKPHVCDVCSKGFSTSSSLNTHRRIHSGE 197
+GEK H C+ C K FS S L H+RIH+GE
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 138 SPSKTMLPCTVCGKSFDRPSLLKRHTRTHTGE 169
S + + C CGK+F S L H R HTGE
Sbjct: 5 SSGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 167 TGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
+GEK H C C K FS S L H+RIH+GE P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 195 SGERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
SGE+ H C C KTF+ S L H+ H + P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 138 SPSKTMLPCTVCGKSFDRPSLLKRHTRTHTGEKP 171
S + + C+ C K+F S L H R HTGE P
Sbjct: 5 SSGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C+ C K F+ +S L HRR+H+G +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK F + S L RH R HTG KP
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P+ C C K FT +S+L HR H KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP+KC CGK F +L H H+G P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PYKC C K F ++S+L H +H
Sbjct: 12 PYKCNECGKVFTQNSHLARHRRVH 35
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGE 197
EKP+ C+VC K F S+ LN H R+H+ E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PY C VC K F S++L H+ +H
Sbjct: 12 PYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGE 169
C VCGK+F + L +H R HT E
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C+ CGK+F R S L H R HTGEKP
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
E+ + C C K F+ S+L H+RIH+GE+P
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C+ C K F+ +S L HR IH+GE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P+ C C K FT +S+L HR H +KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK F + S L RH HTGEKP
Sbjct: 15 CNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP+KC CGK F +L H H+G P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PYKC C K F ++S+L H IH
Sbjct: 12 PYKCNECGKVFTQNSHLVRHRGIH 35
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 167 TGEKPHVCDVCSKGFSTSSSLNTHRRIHSGER 198
T EKP+ C C K F T S+L TH+ IH+GE+
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 223 VKDKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVG 264
K+KP+KC CGK+F T NL TH H+G K PS G
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGE---KRSGPSSG 46
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 13/24 (54%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PYKC C K F SNL H IH
Sbjct: 12 PYKCYECGKAFRTRSNLTTHQVIH 35
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDK 226
E+P+ C C K F SNL H++ H +K
Sbjct: 10 EKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGER 198
EK H CD C K F S+L H+R+H GE+
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHMGEK 39
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEK 170
C CGK+F S L+ H R H GEK
Sbjct: 15 CDECGKNFCYISALRIHQRVHMGEK 39
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVG 264
+K H C CGK+F LR H H G K PS G
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHMGE---KCSGPSSG 46
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C+ C K F+ +S L H+RIH+G +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PYKC C K F ++S+L NH IH
Sbjct: 12 PYKCNECGKVFTQNSHLANHQRIH 35
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK F + S L H R HTG KP
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP+KC CGK F +L H H+G P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P+ C C K FT +S+L H+ H KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EK + C+ C K FS +S L+ H++IH+GE+P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK F R S L +H + HTGEKP
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 289 YKCTVCIKGFAKSSNLKNHMTIH 311
YKC C K F+++S L H IH
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIH 35
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 195 SGERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
SGE+P C C K F++ S L H+ TH ++KP
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 167 TGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
+GEKP C C K FS+ S L H++ H+ E+P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 167 TGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
+GEKP+ C+ C K F+ S L H+ +H+G +P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 195 SGERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
SGE+P+ C C K FT S L H+ H KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P++C C K FT SNL H+ H K KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP++C C K F+ S+L H++IH+ ++P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK+F S L +H + HT +KP
Sbjct: 15 CAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP+ C CGK+F NL H H+ P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
+KP+ C+ C K F+ +S L HR IH+GE+P
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK F + S L RH HTGEKP
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
++P+ C C K FT +S+L HR H +KP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PYKC C K F ++S+L H IH
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIH 35
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.029, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGER 198
EKP+ C+ C KG++ +L+ H+R+H GE+
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 29.3 bits (64), Expect = 2.9, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVG 264
+KP+KC CGK + NL H H G K PS G
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGE---KTSGPSSG 46
Score = 28.1 bits (61), Expect = 6.2, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PYKC C KG+ + NL H +H
Sbjct: 12 PYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 28.1 bits (61), Expect = 6.8, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEK 170
C CGK ++R L H R H GEK
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C+ CGK+F S L H RTHTGEKP
Sbjct: 13 CSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 167 TGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
+G KP+ C C K F + S L H R H+GE+P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 195 SGERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
SG +P+ C C K F + S L H TH +KP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
E P +C C K F+ ++L H++IH+GERP
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E P +C C K FT +NL H+ H ++P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C+ CGK F + L H + HTGE+P
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGKSF R L +H R H+GEKP
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EK + C C K FS + L H R+HSGE+P
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
E+ H C C K F +S+ HRRIH+GE+P
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
ER H C C K F +SN HR H +KP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C+ CGK F + S +H R HTGEKP
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 167 TGEKPHVCDVCSKGFSTSSSLNTHRRIHSG 196
+GEKP+VC C K F+ S L H+ IH+G
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 195 SGERPHVCPICFKTFTASSNLYYHRITH 222
SGE+P+VC C K FT S L H+ H
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIH 33
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP C C K F + L +H RIH+GE+P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK+F + L H R HTGEKP
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP KC CGK+F +L +H H+G P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 167 TGEKPHVCDVCSKGFSTSSSLNTHRRIHSGE 197
+GEKP+ C C K F S L H+R H+GE
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGE 169
CT CGK+F S L H RTHTGE
Sbjct: 13 CTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 195 SGERPHVCPICFKTFTASSNLYYHRITHVKD 225
SGE+P+ C C K F S L H+ TH +
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 280 SYSHSGSWPYKCTVCIKGFAKSSNLKNHMTIH 311
S SG PY+CT C K F S L H H
Sbjct: 2 SSGSSGEKPYECTDCGKAFGLKSQLIIHQRTH 33
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 143 MLPCTVCGKSFDRPSLLKRHTRTHTGEK 170
M + CGK F R L+RH RTHTGEK
Sbjct: 4 MCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 170 KPHVC--DVCSKGFSTSSSLNTHRRIHSGER 198
+P +C C K F+ S L H+R H+GE+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGER 198
EKP+ C C KG+ L+ H+R+H+GE+
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEK 170
C CGK + R L H R HTGEK
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVG 264
+KP+KC CGK + +L H H+G K+ PS G
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGE---KLSGPSSG 46
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PYKC C KG+ + +L H +H
Sbjct: 12 PYKCVECGKGYKRRLDLDFHQRVH 35
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
E P+ C C K FS L +H+R H+GE+P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK+F R L H RTH GEKP
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E P+ C C K F+ L H+ TH +KP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 173 VCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYH 218
VC +C FS+S SL H I E VCP+C K FT++ + H
Sbjct: 76 VCPLCLMPFSSSVSLKQH--IRYTEHTKVCPVCKKEFTSTDSALDH 119
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
E+ + C C K F S+L+ H+RIH GE+P
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C+ CGK+F + S L H R H GEKP
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGER 198
+KP+ C C K F LN H+R+H+GER
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGER 198
EKP+ C C K F+ S L+ H++ H+GER
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEK 170
C+ CGK+F R S L H ++HTGE+
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSG 252
+KP+KC CGK+F L H SH+G
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTG 37
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDK 226
E+P+ C C K FT S L+ H+ +H ++
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP C C K ++ L H+R+H+GE+P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGKS+++ L +H R HTGEKP
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP KCG CGKS+ +L H H+G P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 144 LPCTVCGKSFDRPSLLKRHTRTHTGEK 170
C C + F R LK HTRTHTGEK
Sbjct: 3 FQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 170 KPHVCDVCSKGFSTSSSLNTHRRIHSGER 198
KP C C + FS S L TH R H+GE+
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 226 KPHKCGACGKSFPTPGNLRTHSYSHSGS 253
KP +C C + F +L+TH+ +H+G
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGE 28
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C C K F +S L H+ IH+GE+P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 16/26 (61%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK F R S L RH HTGEKP
Sbjct: 15 CHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E+P+ C C K F +S+L H++ H +KP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP+KC CGK F +L H H+G P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PYKC C K F ++S+L H IH
Sbjct: 12 PYKCHECGKVFRRNSHLARHQLIH 35
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 167 TGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
T E P C+ C K FS S+ L+ H+ IH+GE P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKP 227
E P C C KTF+ S++L H++ H + P
Sbjct: 10 EHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C CGK+F + L +H H GE P
Sbjct: 15 CNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 223 VKDKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVG 264
K+ P KC CGK+F +L H H+G P PS G
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENPS---GPSSG 46
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
P+KC C K F+ S++L H IH
Sbjct: 12 PFKCNECGKTFSHSAHLSKHQLIH 35
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 167 TGEKPHVCDVCSKGFSTSSSLNTHRRIHSGE 197
T EKP+ C C K F +S L H+R HSGE
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGE 169
C+ CGK+F R S L H RTH+GE
Sbjct: 15 CSECGKAFIRNSQLIVHQRTHSGE 38
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 223 VKDKPHKCGACGKSFPTPGNLRTHSYSHSG 252
++KP++C CGK+F L H +HSG
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSG 37
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKD 225
E+P+ C C K F +S L H+ TH +
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGER 198
+KP C C K F +L TH+RIH+GE+
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSG 252
KP +C CGKSF GNL TH H+G
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTG 37
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 15/27 (55%)
Query: 144 LPCTVCGKSFDRPSLLKRHTRTHTGEK 170
CT CGKSF L H R HTGEK
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGER 198
EKP+ C C K F+ S L H++ H+GER
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSG 252
+KP+KC CGKSF LR H H+G
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTG 37
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEK 170
C+ CGKSF S L+ H + HTGE+
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 171 PHVCDVCSKGFSTSSSLNTHRRIHSGER 198
P C C K F+TS +L H RIHSGE+
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 227 PHKCGACGKSFPTPGNLRTHSYSHSGS 253
P KC CGK F T GNL+ H HSG
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGE 28
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 144 LPCTVCGKSFDRPSLLKRHTRTHTGEK 170
L C CGK F LKRH R H+GEK
Sbjct: 3 LKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
P KC C K F S NLK H+ IH
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIH 25
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 266 CGKSFPTPGNLRTHSYSHSGS 286
CGK F T GNL+ H HSG
Sbjct: 8 CGKQFTTSGNLKRHLRIHSGE 28
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 170 KPHVCDVCSKGFSTSSSLNTHRRIHSGE 197
KP+VC+ C K F + S L H R H+GE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGE 169
C CGK+F S L HTRTHTGE
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+KP+KC CG F +LR H H+GS P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C+ C F + L H IH+G P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PYKC C F + ++L+ H+ IH
Sbjct: 11 PYKCETCGARFVQVAHLRAHVLIH 34
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGE 169
C+ CGK+F+R L H RTH GE
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAGE 36
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 167 TGEKPHVCDVCSKGFSTSSSLNTHRRIHSGE 197
+GE P+ C C K F+ L +H+R H+GE
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 195 SGERPHVCPICFKTFTASSNLYYHRITHVKD 225
SGE P+ C C K F L H+ TH +
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 284 SGSWPYKCTVCIKGFAKSSNLKNHMTIH 311
SG PY+C+ C K F + L +H H
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTH 33
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 33.1 bits (74), Expect = 0.21, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEK 170
C VC ++F R LKRH R+HT EK
Sbjct: 5 CEVCTRAFARQEALKRHYRSHTNEK 29
Score = 28.5 bits (62), Expect = 5.3, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 173 VCDVCSKGFSTSSSLNTHRRIHSGER 198
VC+VC++ F+ +L H R H+ E+
Sbjct: 4 VCEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 33.1 bits (74), Expect = 0.21, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEK 170
C VC ++F R LKRH R+HT EK
Sbjct: 5 CEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 195 SGERPHVCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPG 241
SGE+P+ CP+C F + YH +H G+ GKS P+ G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHD-------GSVGKSGPSSG 45
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 32.7 bits (73), Expect = 0.24, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 170 KPHVCDVCSKGFSTSSSLNTHRRIHSGER 198
KP+VC C + F+ +L H RIH+GE+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 32.3 bits (72), Expect = 0.37, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEK 170
C C + F P L+RH R HTGEK
Sbjct: 6 CIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
P+KC C KGF + S+L H+ +H
Sbjct: 12 PFKCNECGKGFGRRSHLAGHLRLH 35
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGER 198
E+P C+ C KGF S L H R+HS E+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 144 LPCTVCGKSFDRPSLLKRHTRTHTGEK 170
C CGK F R S L H R H+ EK
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EKP+ C++C F +L +H RIH+G P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 145 PCTVCGKSFDRPSLLKRHTRTHTGEKP 171
PC +CG F LK H R HTG P
Sbjct: 13 PCEICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 170 KPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
KP+ C C+K FS S L H+R H+G +P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C+ C K+F S L H R+HTG KP
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 198 RPHVCPICFKTFTASSNLYYHRITHVKDKP 227
+P+ C C KTF+ S L H+ +H KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 32.3 bits (72), Expect = 0.31, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEK 170
C +CGK+F + S L H R HTGEK
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 31.2 bits (69), Expect = 0.75, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 170 KPHVCDVCSKGFSTSSSLNTHRRIHSGER 198
KP C +C K F+ +SSL H R H+GE+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 140 SKTMLPCTVCGKSFDRPSLLKRHTRTHTGEKPH 172
++ + C +CGK F L RH +H+GEKP+
Sbjct: 9 TRKQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 173 VCDVCSKGFSTSSSLNTHRRIHSGERPH 200
C++C K F LN H+ HSGE+P+
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 170 KPHVCDVCSKGFSTSSSLNTHRRIHSG 196
+P+ C VC K FS + TH R+H+G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTG 168
C+VCGK F ++ H R HTG
Sbjct: 6 CSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 198 RPHVCPICFKTFTASSNLYYHRITHVKDKP 227
+P+ C C K+F+ S L H ITH ++KP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKP 171
C+ CGKSF L +H THT EKP
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKP 40
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 170 KPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
KP+ C C K FS S L H H+ E+P
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 164 RTHTGEKPHVCDVCSKGFSTSSSLNTH---RRIHSGERPHVCPICFKTFTASSNLYYH 218
RTH+GEKP+ C +C F+ S ++ H + + + H CP C S+L H
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFH-CPHCDTVIARKSDLGVH 64
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 282 SHSGSWPYKCTVCIKGFAKSSNLKNHM 308
+HSG PY+C +C F +S +K H+
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHI 35
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 167 TGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
+G++ + C C K F SL H RIH+G P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 138 SPSKTMLPCTVCGKSFDRPSLLKRHTRTHTGEKP 171
S + + C CGKSF + L H R HTG P
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+ ++C CGKSF G+L H H+GS P
Sbjct: 8 QRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 31.6 bits (70), Expect = 0.57, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEK 170
C VC ++F R LKRH R+HT EK
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 165 THTGEKPHVCDVCSKGFSTSSS-----LNTHRRIHSGERPHVCPICFKTFTASSNLYYH 218
T GE + C VCS+ ++ S+ + +H+R + + CP CFK FT N+ H
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKR---NVKVYPCPFCFKEFTRKDNMTAH 59
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 195 SGERPHVCPICFKTFTASSNLYYHRITHVKD--KPHKCGACGKSFPTPGNLRTH 246
GE + C +C + +T SN H +T K K + C C K F N+ H
Sbjct: 6 EGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH 59
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 170 KPHVCDVCSKGFSTSSSLNTHRRIHSGE 197
K H+CD+C K F + +L +H+ +H+ +
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 198 RPHVCPICFKTFTASSNLYYHRITHVKD 225
+ H+C +C K F + L H++ H D
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 226 KPHKCGACGKSFPTPGNLRTHSYSHS 251
K H C CGK F + G L++H H+
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHT 33
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc Finger
Protein 32
Length = 42
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255
+ P+ CG CGKSF G+L H S S S P
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 30.8 bits (68), Expect = 0.99, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 172 HVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYH 218
H+C VC + F++ + H R+ + C C TF +S L H
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTH 190
C VCG+SF +RH R + C C F +S L H
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
EK C C FS +SSL H+ +H GE+P
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 195 SGERPHVCPICFKTFTASSNLYYHRITH 222
SG+RP VC IC FT +N H H
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 284 SGSWPYKCTVCIKGFAKSSNLKNHMTIH 311
SG P+ C +C+ F +N H+ +H
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 167 TGEKPHVCDVCSKGFSTSSSLNTHRRIHS 195
+G++P VC +C F+T ++ H ++H+
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHT 31
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 138 SPSKTMLPCTV--CGKSFDRPSLLKRHTR-THTGEKPHVCD--VCSKGFSTSSSLNTHRR 192
S + +PC CG+ F L H + H +K C C K F+ L H +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 193 IHSGERPHVCPI 204
+HS R ++C
Sbjct: 62 LHSDTRDYICEF 73
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSG 196
EKP+ C+ C K F S L H R H+G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTG 168
C CGK+F SLL H RTH G
Sbjct: 15 CNECGKAFIWKSLLIVHERTHAG 37
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVG 264
+KP++C CGK+F L H +H+G + PS G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG-----VSGPSSG 44
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 195 SGERPHVCPICFKTFTASSNLYYHRITH-VKDKP 227
SGE+P+ C C +TF+ ++ L H+ H VK P
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGP 39
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 167 TGEKPHVCDVCSKGFSTSSSLNTHRRIHS 195
+GEKP+ C C + FS ++ L H+++H+
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 163 TRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIH 194
TR TG KP C C + FS S L HR+ H
Sbjct: 3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 192 RIHSGERPHVCPICFKTFTASSNLYYHRITHV 223
R +G +P CP C ++F+ S +L HR H+
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 197 ERPHVCPICFKTFTASSNLYYHRITHVKDK 226
E+P C C K F S L H+ THV DK
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDK 39
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 171 PHVCDVCSKGFSTSSSLNTHRRIHSGERP 199
P+ C C K FS L H+R+H+ E+P
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|1YUX|A Chain A, Mixed Valant State Of Nigerythrin
pdb|1YUX|B Chain B, Mixed Valant State Of Nigerythrin
pdb|1YV1|A Chain A, Fully Reduced State Of Nigerythrin (All Ferrous)
pdb|1YV1|B Chain B, Fully Reduced State Of Nigerythrin (All Ferrous)
Length = 202
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 16/46 (34%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFK---TFTA 211
+K H+C +C G+ IH GE CPICF+ TFTA
Sbjct: 169 DKFHLCPIC--GY-----------IHKGEDFEKCPICFRPKDTFTA 201
>pdb|1YUZ|A Chain A, Partially Reduced State Of Nigerythrin
pdb|1YUZ|B Chain B, Partially Reduced State Of Nigerythrin
Length = 202
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 16/46 (34%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFK---TFTA 211
+K H+C +C G+ IH GE CPICF+ TFTA
Sbjct: 169 DKFHLCPIC--GY-----------IHKGEDFEKCPICFRPKDTFTA 201
>pdb|2EOU|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
370- 400) Of Human Zinc Finger Protein 473
Length = 44
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 139 PSKTMLPCTVCGKSFDRPSLLKRHTRTHTGE 169
+KT C CGK F SLL H H GE
Sbjct: 8 AAKTTSECQECGKIFRHSSLLIEHQALHAGE 38
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 146 CTVCGKSFDRPSLLKRHTR-THTGEKP 171
C CGK+F + + L RH R HTGEKP
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTH-RRIHSGERP 199
+KP+ C C K F ++SL H R H+GE+P
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 170 KPHVCDVCSKGFSTSSSLNTHRRIHSGER 198
KP+ C CS + ++LN H R H+GE+
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 169 EKPHVCDV--CSKGFSTSSSLNTHRRIHSGERP 199
EKP C C FS S L+ HRR HSG +P
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 149 CGKSFDRPSLLKRHTRTHTGEKP 171
CG F R L RH R+H+G KP
Sbjct: 20 CGWRFSRSDELSRHRRSHSGVKP 42
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 1)
Length = 37
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 169 EKPHVCDV--CSKGFSTSSSLNTHRRIHSGER 198
+K H+C + C K + +S L H R H+GER
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 289 YKCTVCIKGFAKSSNLKNHM 308
Y+C C K FA SSNLK H+
Sbjct: 3 YQCQYCEKRFADSSNLKTHI 22
>pdb|1WCS|A Chain A, A Mutant Of Trypanosoma Rangeli Sialidase Displaying
Trans- Sialidase Activity
Length = 641
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 261 PSVGACGKSFPTPGNLRTHSYSHSGS-WP--YKC 291
PS GACG + PT G + S+S +GS W Y+C
Sbjct: 409 PSKGACGAAVPTAGLVGFLSHSANGSVWEDVYRC 442
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 170 KPHVCDVCSKGFSTSSSLNTHRRIHS 195
KP+VC+ C K F SS L H R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHHD 26
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 288 PYKCTVCIKGFAKSSNLKNHMTIH 311
PY C C K F +SS L NH+ H
Sbjct: 2 PYVCERCGKRFVQSSQLANHIRHH 25
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 28.1 bits (61), Expect = 7.1, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 172 HVCDVCSKGFSTSSSLNTHRR 192
+VC+VC+ FST S+L+ H R
Sbjct: 117 YVCNVCNARFSTMSALSEHLR 137
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 28.1 bits (61), Expect = 7.1, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 172 HVCDVCSKGFSTSSSLNTHRR 192
+VC+VC+ FST S+L+ H R
Sbjct: 99 YVCNVCNARFSTMSALSEHLR 119
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 146 CTVCGKSFDRPSLLKRHTRTHTGE 169
C CGK F R L H +TH+G+
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSGQ 38
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGE 197
E P+ C C K FS L +H++ HSG+
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQ 38
>pdb|2ELX|A Chain A, Solution Structure Of The 8th C2h2 Zinc Finger Of Mouse
Zinc Finger Protein 406
Length = 35
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 284 SGSWPYKCTVCIKGFAKSSNLKNHM 308
SGS Y C +C+K F S L++H+
Sbjct: 3 SGSSGYVCALCLKKFVSSIRLRSHI 27
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 170 KPHVCDVCSKGFSTSSSLNTHRRIHSGER 198
K C+ C+K F SL H RIH+ E+
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,668,658
Number of Sequences: 62578
Number of extensions: 396348
Number of successful extensions: 1928
Number of sequences better than 100.0: 198
Number of HSP's better than 100.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 777
Number of HSP's gapped (non-prelim): 986
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)