Query psy7185
Match_columns 311
No_of_seqs 498 out of 1944
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 20:19:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2462|consensus 100.0 4.8E-30 1E-34 208.6 6.5 132 141-279 128-262 (279)
2 KOG2462|consensus 100.0 1.8E-29 3.8E-34 205.3 6.8 136 168-310 127-265 (279)
3 KOG1074|consensus 99.9 4.9E-27 1.1E-31 215.0 4.3 50 262-311 881-930 (958)
4 KOG1074|consensus 99.8 1.1E-21 2.3E-26 180.3 5.9 83 141-223 603-692 (958)
5 KOG3608|consensus 99.8 1.7E-21 3.7E-26 162.8 6.1 162 140-309 204-373 (467)
6 KOG3623|consensus 99.8 6.7E-22 1.4E-26 178.8 3.5 77 228-309 895-971 (1007)
7 KOG3608|consensus 99.8 3E-21 6.5E-26 161.4 6.1 160 143-310 179-343 (467)
8 KOG3576|consensus 99.7 3.4E-18 7.4E-23 132.7 2.7 116 140-255 114-240 (267)
9 KOG3576|consensus 99.7 1.2E-17 2.6E-22 129.7 1.6 121 168-288 114-240 (267)
10 KOG3623|consensus 99.5 2.3E-15 4.9E-20 137.0 2.7 108 142-249 209-331 (1007)
11 PLN03086 PRLI-interacting fact 99.4 5.1E-13 1.1E-17 122.3 9.3 144 142-309 406-561 (567)
12 PLN03086 PRLI-interacting fact 99.2 4.2E-11 9.1E-16 109.9 7.7 118 143-282 433-562 (567)
13 PHA00733 hypothetical protein 99.1 1.2E-10 2.6E-15 87.6 4.7 82 169-252 38-124 (128)
14 KOG3993|consensus 99.0 2E-11 4.3E-16 105.3 -1.2 168 142-309 266-479 (500)
15 PHA00733 hypothetical protein 99.0 6.3E-10 1.4E-14 83.7 4.9 82 197-285 38-124 (128)
16 PHA02768 hypothetical protein; 98.9 8.8E-10 1.9E-14 68.3 2.2 42 262-305 7-48 (55)
17 PF13465 zf-H2C2_2: Zinc-finge 98.8 2.9E-09 6.4E-14 56.4 2.6 26 275-300 1-26 (26)
18 PHA02768 hypothetical protein; 98.8 2.4E-09 5.2E-14 66.4 2.1 39 200-240 6-44 (55)
19 PF13465 zf-H2C2_2: Zinc-finge 98.5 3.4E-08 7.5E-13 52.3 1.1 23 215-237 2-24 (26)
20 KOG3993|consensus 98.3 7.6E-08 1.6E-12 83.6 -1.1 25 261-285 357-381 (500)
21 PHA00732 hypothetical protein 98.2 1.1E-06 2.3E-11 60.0 3.2 48 227-285 1-49 (79)
22 PHA00732 hypothetical protein 98.2 1.2E-06 2.6E-11 59.8 3.1 50 199-254 1-51 (79)
23 PHA00616 hypothetical protein 98.2 5.7E-07 1.2E-11 53.1 1.0 29 228-256 2-30 (44)
24 PF00096 zf-C2H2: Zinc finger, 98.2 7.8E-07 1.7E-11 45.7 1.3 23 289-311 1-23 (23)
25 PHA00616 hypothetical protein 98.1 9.9E-07 2.1E-11 52.1 1.5 37 262-298 3-39 (44)
26 PF12756 zf-C2H2_2: C2H2 type 97.9 6.8E-06 1.5E-10 59.3 2.3 22 288-309 50-71 (100)
27 PF05605 zf-Di19: Drought indu 97.9 2.9E-05 6.3E-10 49.1 4.7 48 144-194 3-52 (54)
28 PF05605 zf-Di19: Drought indu 97.9 3.3E-05 7.1E-10 48.9 4.8 6 230-235 5-10 (54)
29 PF13912 zf-C2H2_6: C2H2-type 97.8 1E-05 2.2E-10 43.2 1.9 24 288-311 1-24 (27)
30 PF13894 zf-C2H2_4: C2H2-type 97.8 1.3E-05 2.8E-10 41.4 1.3 23 289-311 1-23 (24)
31 PF00096 zf-C2H2: Zinc finger, 97.7 1.4E-05 3E-10 40.9 0.9 21 229-249 2-22 (23)
32 PF13894 zf-C2H2_4: C2H2-type 97.5 6.1E-05 1.3E-09 38.7 1.6 23 228-250 1-23 (24)
33 PF12756 zf-C2H2_2: C2H2 type 97.5 5.6E-05 1.2E-09 54.4 1.8 72 174-250 2-73 (100)
34 COG5189 SFP1 Putative transcri 97.4 5.2E-05 1.1E-09 63.9 1.1 25 285-309 395-419 (423)
35 smart00355 ZnF_C2H2 zinc finge 97.3 0.00013 2.8E-09 38.1 1.4 23 289-311 1-23 (26)
36 PF13912 zf-C2H2_6: C2H2-type 97.3 9.8E-05 2.1E-09 39.3 0.7 23 228-250 2-24 (27)
37 PF12874 zf-met: Zinc-finger o 97.1 0.00027 5.8E-09 36.8 1.3 22 289-310 1-22 (25)
38 KOG2231|consensus 97.0 0.0022 4.7E-08 60.7 7.4 47 201-251 184-236 (669)
39 COG5189 SFP1 Putative transcri 97.0 0.00027 5.9E-09 59.7 0.9 17 263-279 401-417 (423)
40 KOG2231|consensus 96.9 0.0021 4.6E-08 60.7 6.0 124 173-309 117-260 (669)
41 COG5236 Uncharacterized conser 96.8 0.0016 3.5E-08 55.7 4.4 22 201-222 222-243 (493)
42 smart00355 ZnF_C2H2 zinc finge 96.7 0.0019 4.1E-08 33.5 2.8 21 229-249 2-22 (26)
43 PF13909 zf-H2C2_5: C2H2-type 96.5 0.0013 2.7E-08 33.9 1.2 22 289-311 1-22 (24)
44 PF12171 zf-C2H2_jaz: Zinc-fin 96.5 0.0012 2.6E-08 35.1 1.0 22 289-310 2-23 (27)
45 PF09237 GAGA: GAGA factor; I 96.4 0.0027 5.9E-08 38.4 2.3 30 225-254 22-51 (54)
46 COG5048 FOG: Zn-finger [Genera 96.4 0.001 2.3E-08 61.0 0.4 149 144-295 290-453 (467)
47 PF13909 zf-H2C2_5: C2H2-type 96.3 0.0024 5.1E-08 32.8 1.3 22 228-250 1-22 (24)
48 PF09237 GAGA: GAGA factor; I 96.1 0.0074 1.6E-07 36.6 3.0 31 141-171 22-52 (54)
49 COG5048 FOG: Zn-finger [Genera 96.0 0.0013 2.8E-08 60.4 -0.7 141 171-311 289-441 (467)
50 PRK04860 hypothetical protein; 96.0 0.0045 9.7E-08 48.4 2.3 36 199-238 119-154 (160)
51 PRK04860 hypothetical protein; 95.9 0.0041 8.8E-08 48.7 1.8 36 263-302 122-157 (160)
52 PF12874 zf-met: Zinc-finger o 95.8 0.0057 1.2E-07 31.6 1.4 22 144-165 1-22 (25)
53 KOG1146|consensus 95.8 0.0019 4.2E-08 64.6 -0.8 103 144-249 437-540 (1406)
54 KOG2785|consensus 95.6 0.028 6.1E-07 49.2 5.6 47 263-309 169-241 (390)
55 PF12171 zf-C2H2_jaz: Zinc-fin 95.5 0.0057 1.2E-07 32.4 0.8 22 228-249 2-23 (27)
56 PF13913 zf-C2HC_2: zinc-finge 95.3 0.012 2.6E-07 30.5 1.5 19 290-309 4-22 (25)
57 COG5236 Uncharacterized conser 95.0 0.021 4.6E-07 49.1 3.0 122 172-308 152-301 (493)
58 KOG1146|consensus 94.7 0.0077 1.7E-07 60.6 -0.2 81 222-310 460-540 (1406)
59 TIGR00622 ssl1 transcription f 94.7 0.08 1.7E-06 38.4 4.8 47 263-311 58-104 (112)
60 TIGR00622 ssl1 transcription f 94.7 0.092 2E-06 38.1 5.1 25 227-251 81-105 (112)
61 smart00451 ZnF_U1 U1-like zinc 94.5 0.026 5.6E-07 31.8 1.7 23 288-310 3-25 (35)
62 KOG2785|consensus 94.3 0.12 2.6E-06 45.4 6.0 140 143-282 3-242 (390)
63 KOG2482|consensus 94.2 0.14 3E-06 44.3 5.9 21 289-309 335-355 (423)
64 PF13913 zf-C2HC_2: zinc-finge 93.3 0.097 2.1E-06 27.1 2.3 20 144-164 3-22 (25)
65 KOG2482|consensus 93.2 0.13 2.7E-06 44.5 4.2 142 139-283 140-357 (423)
66 cd00350 rubredoxin_like Rubred 92.4 0.1 2.2E-06 29.0 1.8 11 200-210 2-12 (33)
67 smart00451 ZnF_U1 U1-like zinc 92.1 0.12 2.5E-06 29.0 1.9 22 227-248 3-24 (35)
68 KOG2893|consensus 91.2 0.071 1.5E-06 43.6 0.4 41 174-218 13-53 (341)
69 PF12013 DUF3505: Protein of u 91.0 0.39 8.3E-06 35.1 4.1 21 172-193 12-32 (109)
70 KOG4173|consensus 90.4 0.1 2.2E-06 41.7 0.6 81 198-284 78-170 (253)
71 COG4049 Uncharacterized protei 89.1 0.15 3.3E-06 31.5 0.5 30 223-252 13-42 (65)
72 PF09538 FYDLN_acid: Protein o 88.5 0.37 8E-06 35.0 2.3 30 200-240 10-39 (108)
73 KOG2893|consensus 88.3 0.12 2.5E-06 42.3 -0.5 47 197-248 9-55 (341)
74 COG4049 Uncharacterized protei 87.2 0.29 6.3E-06 30.3 0.9 27 283-309 12-38 (65)
75 PF12013 DUF3505: Protein of u 86.9 1.1 2.5E-05 32.6 4.1 25 142-167 10-34 (109)
76 PF09538 FYDLN_acid: Protein o 86.7 0.39 8.4E-06 34.9 1.5 28 263-301 12-39 (108)
77 PF09986 DUF2225: Uncharacteri 86.6 0.14 3E-06 42.4 -1.0 48 226-273 4-61 (214)
78 KOG2186|consensus 85.5 0.51 1.1E-05 39.2 1.8 49 172-223 4-52 (276)
79 KOG2186|consensus 85.5 0.5 1.1E-05 39.2 1.7 48 143-193 3-50 (276)
80 cd00729 rubredoxin_SM Rubredox 84.8 0.74 1.6E-05 25.7 1.7 10 200-209 3-12 (34)
81 KOG4173|consensus 84.1 0.37 8E-06 38.6 0.3 79 170-251 78-170 (253)
82 PF02892 zf-BED: BED zinc fing 82.2 1.3 2.8E-05 26.4 2.2 24 285-308 13-40 (45)
83 PHA00626 hypothetical protein 81.1 0.7 1.5E-05 28.7 0.7 14 287-300 22-35 (59)
84 PF10571 UPF0547: Uncharacteri 81.1 1.5 3.2E-05 22.9 1.8 8 263-270 17-24 (26)
85 TIGR02300 FYDLN_acid conserved 80.5 1.5 3.2E-05 32.5 2.3 30 200-240 10-39 (129)
86 COG1592 Rubrerythrin [Energy p 79.5 1.3 2.9E-05 34.7 1.9 24 199-235 134-157 (166)
87 PRK00464 nrdR transcriptional 79.4 0.44 9.5E-06 37.0 -0.7 15 172-186 29-43 (154)
88 smart00614 ZnF_BED BED zinc fi 78.9 1.4 3E-05 27.0 1.6 20 290-309 20-44 (50)
89 PF09986 DUF2225: Uncharacteri 78.2 0.52 1.1E-05 39.0 -0.7 13 228-240 49-61 (214)
90 TIGR02300 FYDLN_acid conserved 78.0 1.3 2.9E-05 32.8 1.4 27 263-300 12-38 (129)
91 PF13719 zinc_ribbon_5: zinc-r 78.0 1.6 3.6E-05 24.8 1.6 11 227-237 25-35 (37)
92 PF06524 NOA36: NOA36 protein; 77.9 0.92 2E-05 37.8 0.7 27 285-311 206-232 (314)
93 smart00659 RPOLCX RNA polymera 77.7 1.7 3.6E-05 26.0 1.6 10 200-209 3-12 (44)
94 PF13717 zinc_ribbon_4: zinc-r 77.6 1.9 4.1E-05 24.4 1.7 13 201-213 4-16 (36)
95 TIGR00373 conserved hypothetic 76.3 2.7 5.8E-05 32.9 2.9 33 168-209 106-138 (158)
96 smart00734 ZnF_Rad18 Rad18-lik 76.0 1.9 4.2E-05 22.4 1.3 19 290-309 3-21 (26)
97 COG2888 Predicted Zn-ribbon RN 75.7 1.7 3.8E-05 27.4 1.3 9 226-234 49-57 (61)
98 TIGR00373 conserved hypothetic 75.3 3 6.5E-05 32.7 2.9 18 198-215 108-125 (158)
99 KOG2807|consensus 75.2 4.8 0.0001 34.9 4.2 24 227-250 345-368 (378)
100 PRK00398 rpoP DNA-directed RNA 75.2 1.7 3.7E-05 26.1 1.2 11 200-210 4-14 (46)
101 TIGR02098 MJ0042_CXXC MJ0042 f 74.8 1.5 3.2E-05 25.0 0.8 11 201-211 4-14 (38)
102 smart00531 TFIIE Transcription 72.1 6.1 0.00013 30.5 3.9 37 169-209 97-133 (147)
103 TIGR02605 CxxC_CxxC_SSSS putat 72.0 1.4 3E-05 27.2 0.2 11 200-210 6-16 (52)
104 PRK06266 transcription initiat 71.7 3.3 7.1E-05 33.2 2.4 31 170-209 116-146 (178)
105 smart00834 CxxC_CXXC_SSSS Puta 71.3 1.4 3.1E-05 25.5 0.2 10 200-209 6-15 (41)
106 PF06524 NOA36: NOA36 protein; 71.3 2.3 5E-05 35.6 1.4 27 225-251 207-233 (314)
107 PRK06266 transcription initiat 70.1 4.1 8.9E-05 32.6 2.6 16 199-214 117-132 (178)
108 PRK04023 DNA polymerase II lar 70.0 6 0.00013 39.8 4.1 10 228-237 664-673 (1121)
109 COG5151 SSL1 RNA polymerase II 70.0 3.3 7.2E-05 35.6 2.1 24 227-250 388-411 (421)
110 COG1592 Rubrerythrin [Energy p 69.8 3.4 7.4E-05 32.5 2.0 24 171-207 134-157 (166)
111 smart00531 TFIIE Transcription 69.2 4.7 0.0001 31.2 2.7 14 142-155 98-111 (147)
112 PRK09678 DNA-binding transcrip 68.2 1.6 3.4E-05 29.1 -0.1 39 144-184 2-42 (72)
113 PF09723 Zn-ribbon_8: Zinc rib 67.5 2.1 4.5E-05 25.2 0.3 10 200-209 6-15 (42)
114 PF03604 DNA_RNApol_7kD: DNA d 66.5 5.5 0.00012 21.9 1.9 9 227-235 17-25 (32)
115 KOG1280|consensus 66.2 6.6 0.00014 34.4 3.2 40 225-267 77-116 (381)
116 KOG1701|consensus 65.6 1.3 2.8E-05 39.8 -1.2 145 144-300 275-439 (468)
117 PRK14890 putative Zn-ribbon RN 64.0 6.1 0.00013 25.1 1.9 10 143-152 25-34 (59)
118 PRK04023 DNA polymerase II lar 63.9 8.1 0.00017 39.0 3.7 9 200-208 639-647 (1121)
119 KOG4167|consensus 63.6 1.8 4E-05 41.5 -0.7 24 288-311 792-815 (907)
120 COG1996 RPC10 DNA-directed RNA 63.0 3.8 8.2E-05 25.0 0.8 10 200-209 7-16 (49)
121 KOG2807|consensus 62.6 12 0.00026 32.6 4.0 85 200-311 277-368 (378)
122 TIGR01384 TFS_arch transcripti 61.4 1.7 3.6E-05 31.4 -1.1 39 262-300 64-102 (104)
123 PF05443 ROS_MUCR: ROS/MUCR tr 61.0 5.2 0.00011 30.2 1.5 22 200-224 73-94 (132)
124 COG1997 RPL43A Ribosomal prote 60.3 5.4 0.00012 27.4 1.3 11 199-209 53-63 (89)
125 PRK14714 DNA polymerase II lar 60.3 11 0.00023 39.2 3.9 11 199-209 692-702 (1337)
126 KOG2071|consensus 60.0 9.2 0.0002 36.1 3.2 26 169-194 416-441 (579)
127 PF15269 zf-C2H2_7: Zinc-finge 59.3 6.3 0.00014 23.3 1.3 21 289-309 21-41 (54)
128 COG5151 SSL1 RNA polymerase II 58.5 6.8 0.00015 33.8 1.9 47 263-311 365-411 (421)
129 COG1198 PriA Primosomal protei 58.2 2.6 5.7E-05 41.3 -0.6 14 284-297 471-484 (730)
130 PF08274 PhnA_Zn_Ribbon: PhnA 57.7 4.8 0.0001 21.8 0.6 26 262-298 4-29 (30)
131 PF02176 zf-TRAF: TRAF-type zi 57.3 6 0.00013 25.0 1.1 39 199-238 9-53 (60)
132 PF04959 ARS2: Arsenite-resist 56.6 2.9 6.2E-05 34.5 -0.6 26 227-252 77-102 (214)
133 KOG4167|consensus 56.5 3.3 7.3E-05 39.8 -0.3 27 141-167 790-816 (907)
134 COG4530 Uncharacterized protei 56.1 5.9 0.00013 28.4 1.0 26 263-299 12-37 (129)
135 PF09845 DUF2072: Zn-ribbon co 55.0 7.9 0.00017 29.0 1.5 13 200-212 2-14 (131)
136 PF05443 ROS_MUCR: ROS/MUCR tr 54.8 9.1 0.0002 28.9 1.9 27 140-169 69-95 (132)
137 KOG2593|consensus 53.2 15 0.00033 33.3 3.3 39 167-208 124-162 (436)
138 COG3357 Predicted transcriptio 52.9 11 0.00023 26.2 1.8 14 170-183 57-70 (97)
139 PF07975 C1_4: TFIIH C1-like d 51.2 4.8 0.0001 24.8 -0.1 26 226-251 20-45 (51)
140 PRK03824 hypA hydrogenase nick 50.7 6.7 0.00015 29.8 0.6 11 172-182 71-81 (135)
141 PF07754 DUF1610: Domain of un 50.0 7.3 0.00016 19.9 0.5 10 287-296 15-24 (24)
142 PF04959 ARS2: Arsenite-resist 49.3 11 0.00025 31.0 1.8 26 285-310 74-99 (214)
143 COG1198 PriA Primosomal protei 49.2 8.1 0.00018 38.1 1.1 12 225-236 473-484 (730)
144 TIGR00686 phnA alkylphosphonat 48.8 10 0.00023 27.2 1.3 30 261-301 3-32 (109)
145 PF14353 CpXC: CpXC protein 47.5 7.6 0.00017 29.1 0.5 14 288-301 38-51 (128)
146 PRK14559 putative protein seri 46.7 27 0.00059 34.1 4.2 53 144-240 2-54 (645)
147 COG1571 Predicted DNA-binding 46.6 12 0.00026 34.0 1.7 36 256-302 346-381 (421)
148 PF12760 Zn_Tnp_IS1595: Transp 46.3 22 0.00048 21.2 2.3 10 226-235 36-45 (46)
149 COG1571 Predicted DNA-binding 46.3 15 0.00032 33.5 2.1 30 201-241 352-381 (421)
150 KOG2593|consensus 46.2 20 0.00043 32.6 2.9 40 194-236 123-162 (436)
151 PF07800 DUF1644: Protein of u 44.7 93 0.002 24.3 5.9 52 141-195 78-132 (162)
152 PF13878 zf-C2H2_3: zinc-finge 43.5 26 0.00057 20.4 2.3 23 228-250 14-38 (41)
153 COG3364 Zn-ribbon containing p 43.3 16 0.00034 26.0 1.4 12 228-239 3-14 (112)
154 PRK14714 DNA polymerase II lar 43.3 20 0.00043 37.4 2.7 37 172-239 668-704 (1337)
155 PRK10220 hypothetical protein; 43.2 17 0.00037 26.2 1.6 30 261-301 4-33 (111)
156 PRK00432 30S ribosomal protein 43.1 13 0.00027 22.9 0.9 12 287-298 36-47 (50)
157 KOG4124|consensus 41.5 4.8 0.0001 35.3 -1.5 22 286-307 396-417 (442)
158 PF15135 UPF0515: Uncharacteri 41.3 28 0.0006 29.2 2.8 13 199-211 155-167 (278)
159 COG4957 Predicted transcriptio 40.5 14 0.00029 27.8 0.9 20 172-194 77-96 (148)
160 TIGR00100 hypA hydrogenase nic 39.6 16 0.00035 26.8 1.2 12 172-183 71-82 (115)
161 smart00154 ZnF_AN1 AN1-like Zi 39.5 14 0.00031 21.3 0.7 14 288-301 12-25 (39)
162 PF10013 DUF2256: Uncharacteri 39.3 16 0.00034 21.5 0.8 15 290-304 10-24 (42)
163 PRK12380 hydrogenase nickel in 38.6 18 0.00039 26.5 1.3 11 172-182 71-81 (113)
164 PF05191 ADK_lid: Adenylate ki 37.9 6.2 0.00014 22.3 -1.0 10 201-210 3-12 (36)
165 COG3091 SprT Zn-dependent meta 37.5 13 0.00028 28.6 0.4 9 172-181 118-126 (156)
166 TIGR01206 lysW lysine biosynth 37.4 20 0.00043 22.4 1.1 9 201-209 4-12 (54)
167 KOG4377|consensus 37.3 15 0.00033 33.0 0.8 65 171-238 271-360 (480)
168 PF14446 Prok-RING_1: Prokaryo 37.1 8.1 0.00018 24.1 -0.6 11 229-239 7-17 (54)
169 COG1655 Uncharacterized protei 36.5 5.8 0.00013 32.7 -1.7 19 226-244 18-36 (267)
170 TIGR00244 transcriptional regu 36.2 9.3 0.0002 29.3 -0.6 14 172-185 29-42 (147)
171 PF01428 zf-AN1: AN1-like Zinc 35.4 15 0.00032 21.6 0.3 15 287-301 12-26 (43)
172 PRK03564 formate dehydrogenase 35.3 12 0.00026 32.8 -0.1 77 142-239 186-264 (309)
173 KOG3408|consensus 34.3 25 0.00054 25.9 1.4 23 288-310 57-79 (129)
174 PF07282 OrfB_Zn_ribbon: Putat 34.3 30 0.00065 22.5 1.7 29 262-300 30-58 (69)
175 TIGR00595 priA primosomal prot 33.4 37 0.00081 32.2 2.8 48 144-207 214-261 (505)
176 TIGR00595 priA primosomal prot 33.0 14 0.0003 35.0 -0.1 8 173-180 215-222 (505)
177 COG4888 Uncharacterized Zn rib 32.8 12 0.00027 26.5 -0.4 40 140-183 19-58 (104)
178 PF14311 DUF4379: Domain of un 32.7 35 0.00076 21.2 1.7 8 229-236 30-37 (55)
179 PRK00564 hypA hydrogenase nick 32.6 24 0.00052 26.0 1.2 13 171-183 71-83 (117)
180 PTZ00255 60S ribosomal protein 32.4 19 0.0004 25.2 0.5 12 198-209 53-64 (90)
181 KOG0978|consensus 32.2 20 0.00044 34.9 0.9 15 141-155 641-655 (698)
182 KOG2636|consensus 32.1 31 0.00067 31.6 1.9 28 281-308 394-422 (497)
183 smart00440 ZnF_C2C2 C2C2 Zinc 32.0 5.8 0.00013 23.0 -1.8 8 172-179 29-36 (40)
184 COG1327 Predicted transcriptio 31.8 13 0.00029 28.5 -0.3 14 172-185 29-42 (156)
185 KOG3408|consensus 31.2 28 0.00061 25.7 1.2 28 138-165 52-79 (129)
186 KOG0717|consensus 31.0 27 0.00058 32.1 1.4 22 289-310 293-314 (508)
187 COG4957 Predicted transcriptio 30.9 47 0.001 25.0 2.4 29 139-170 72-100 (148)
188 KOG0320|consensus 30.7 18 0.00038 28.7 0.1 10 290-299 169-178 (187)
189 PF03833 PolC_DP2: DNA polymer 30.1 17 0.00037 36.1 0.0 9 172-180 656-664 (900)
190 PF13824 zf-Mss51: Zinc-finger 29.8 54 0.0012 20.6 2.1 11 226-236 13-23 (55)
191 COG1773 Rubredoxin [Energy pro 29.6 25 0.00054 22.1 0.6 12 288-299 3-14 (55)
192 COG1675 TFA1 Transcription ini 29.6 59 0.0013 26.0 2.9 15 168-182 110-124 (176)
193 PTZ00303 phosphatidylinositol 29.6 28 0.0006 34.3 1.3 12 228-239 461-472 (1374)
194 COG4338 Uncharacterized protei 29.2 21 0.00045 21.5 0.2 16 290-305 14-29 (54)
195 TIGR00280 L37a ribosomal prote 28.4 19 0.00042 25.2 0.0 11 199-209 53-63 (91)
196 PRK03681 hypA hydrogenase nick 28.4 24 0.00052 25.9 0.5 12 171-182 70-81 (114)
197 KOG2071|consensus 28.2 31 0.00068 32.8 1.3 27 285-311 415-441 (579)
198 KOG3362|consensus 28.2 31 0.00067 26.3 1.0 22 288-309 129-150 (156)
199 PF08790 zf-LYAR: LYAR-type C2 27.9 12 0.00026 19.8 -0.8 8 202-209 3-10 (28)
200 PRK14873 primosome assembly pr 27.6 43 0.00094 32.9 2.2 11 144-154 384-394 (665)
201 PRK05580 primosome assembly pr 27.5 52 0.0011 32.5 2.8 25 169-208 406-430 (679)
202 PF13248 zf-ribbon_3: zinc-rib 27.4 36 0.00079 17.4 1.0 7 229-235 4-10 (26)
203 PF04423 Rad50_zn_hook: Rad50 27.0 25 0.00054 21.8 0.3 12 290-301 22-33 (54)
204 PF01363 FYVE: FYVE zinc finge 26.9 34 0.00074 22.2 1.0 26 262-299 11-36 (69)
205 smart00661 RPOL9 RNA polymeras 26.9 44 0.00095 20.2 1.5 8 228-235 21-28 (52)
206 KOG1280|consensus 26.6 67 0.0015 28.4 2.9 21 144-164 80-100 (381)
207 PF12773 DZR: Double zinc ribb 26.1 40 0.00087 20.3 1.2 10 229-238 14-23 (50)
208 PRK14873 primosome assembly pr 25.6 44 0.00095 32.9 1.9 9 173-181 385-393 (665)
209 cd00065 FYVE FYVE domain; Zinc 25.4 60 0.0013 20.0 1.9 10 228-237 19-28 (57)
210 KOG2907|consensus 24.8 38 0.00083 24.6 1.0 12 289-300 103-114 (116)
211 KOG4377|consensus 24.8 31 0.00067 31.2 0.6 68 142-212 270-360 (480)
212 PF10276 zf-CHCC: Zinc-finger 24.8 31 0.00066 20.1 0.4 12 287-298 28-39 (40)
213 PTZ00448 hypothetical protein; 24.7 43 0.00093 30.0 1.5 23 288-310 314-336 (373)
214 PF12907 zf-met2: Zinc-binding 23.9 47 0.001 19.3 1.1 6 243-248 20-25 (40)
215 PRK05978 hypothetical protein; 23.6 33 0.00071 26.5 0.5 9 263-271 55-63 (148)
216 KOG0978|consensus 23.4 29 0.00064 33.9 0.3 14 227-240 678-691 (698)
217 PF00301 Rubredoxin: Rubredoxi 23.3 38 0.00083 20.5 0.6 12 289-300 2-13 (47)
218 PF13451 zf-trcl: Probable zin 23.1 38 0.00083 20.7 0.6 16 286-301 2-17 (49)
219 PRK03976 rpl37ae 50S ribosomal 23.1 26 0.00056 24.5 -0.2 11 199-209 54-64 (90)
220 PRK14892 putative transcriptio 23.1 34 0.00074 24.4 0.5 36 141-183 19-54 (99)
221 PF01155 HypA: Hydrogenase exp 22.7 27 0.0006 25.5 -0.1 12 172-183 71-82 (113)
222 KOG0717|consensus 22.4 44 0.00094 30.9 1.1 22 228-249 293-314 (508)
223 KOG2636|consensus 22.1 66 0.0014 29.5 2.1 30 219-248 393-423 (497)
224 PRK12496 hypothetical protein; 22.1 69 0.0015 25.2 2.1 10 172-181 128-137 (164)
225 smart00064 FYVE Protein presen 21.6 69 0.0015 20.6 1.7 10 228-237 27-36 (68)
226 PF05290 Baculo_IE-1: Baculovi 21.4 75 0.0016 24.0 2.0 14 169-182 78-91 (140)
227 cd00730 rubredoxin Rubredoxin; 21.3 38 0.00081 20.8 0.3 12 289-300 2-13 (50)
228 PF06220 zf-U1: U1 zinc finger 21.2 71 0.0015 18.2 1.5 11 288-298 3-13 (38)
229 PF13453 zf-TFIIB: Transcripti 20.9 59 0.0013 18.7 1.1 18 288-305 19-36 (41)
230 PLN02748 tRNA dimethylallyltra 20.8 56 0.0012 30.6 1.5 24 287-310 417-441 (468)
231 PRK00762 hypA hydrogenase nick 20.7 43 0.00093 25.0 0.6 11 172-183 71-81 (124)
232 KOG3214|consensus 20.7 28 0.0006 24.7 -0.4 44 138-185 18-61 (109)
233 COG5188 PRP9 Splicing factor 3 20.4 67 0.0014 28.5 1.7 28 281-308 367-395 (470)
234 COG0068 HypF Hydrogenase matur 20.3 17 0.00036 35.4 -2.0 11 146-156 126-136 (750)
No 1
>KOG2462|consensus
Probab=99.96 E-value=4.8e-30 Score=208.57 Aligned_cols=132 Identities=37% Similarity=0.647 Sum_probs=68.3
Q ss_pred CCccccCcCccccCChhhHHHHHHhhcC---CCCccCCCCCCCCCChHHHHHHHHHhcCCCCccCCCCCCccCCchhHHH
Q psy7185 141 KTMLPCTVCGKSFDRPSLLKRHTRTHTG---EKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYY 217 (311)
Q Consensus 141 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~ 217 (311)
...|+|+.||+.+.+...|.+|.++|.. .+.+.|+.|++.|.+...|.+|+++|+ .+++|.+||+.|...+.|+-
T Consensus 128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQG 205 (279)
T KOG2462|consen 128 HPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQG 205 (279)
T ss_pred CCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhc
Confidence 3456677777777666666666666632 334555555555555555555555553 34455555555555555555
Q ss_pred HHHhcCCCCCCcCCCCCCcCCChhHHHHHHHhhcCCCCcccCCCCcCccCCCCCChHHHHHH
Q psy7185 218 HRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTH 279 (311)
Q Consensus 218 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~C~~C~~~f~~~~~L~~H 279 (311)
|+++|+|||||.|+.|+++|.++++|+.||++|.+.++|+ |..|++.|...+.|.+|
T Consensus 206 HiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~q-----C~~C~KsFsl~SyLnKH 262 (279)
T KOG2462|consen 206 HIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQ-----CPRCGKSFALKSYLNKH 262 (279)
T ss_pred ccccccCCCCccCCcccchhcchHHHHHHHHhhcCCcccc-----CcchhhHHHHHHHHHHh
Confidence 5555555555555555554444444444444444444443 33444444444444444
No 2
>KOG2462|consensus
Probab=99.96 E-value=1.8e-29 Score=205.27 Aligned_cols=136 Identities=35% Similarity=0.641 Sum_probs=128.3
Q ss_pred CCCCccCCCCCCCCCChHHHHHHHHHhcC---CCCccCCCCCCccCCchhHHHHHHhcCCCCCCcCCCCCCcCCChhHHH
Q psy7185 168 GEKPHVCDVCSKGFSTSSSLNTHRRIHSG---ERPHVCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLR 244 (311)
Q Consensus 168 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~ 244 (311)
....|.|+.|++.+.+..+|.+|..+|-. .+.+.|+.|++.|.+...|..|+++|+ -+++|.+|||.|...+.|+
T Consensus 127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQ 204 (279)
T KOG2462|consen 127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQ 204 (279)
T ss_pred cCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhh
Confidence 34569999999999999999999999854 567999999999999999999999997 6899999999999999999
Q ss_pred HHHHhhcCCCCcccCCCCcCccCCCCCChHHHHHHHHHcCCCCceecccccccccChhhHHHHhhh
Q psy7185 245 THSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAKSSNLKNHMTI 310 (311)
Q Consensus 245 ~H~~~h~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~F~~~~~L~~H~r~ 310 (311)
.|+|+|+||+||. |+.|++.|.++++|+.||++|.+.|+|+|..|+|+|+.++.|.+|...
T Consensus 205 GHiRTHTGEKPF~-----C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES 265 (279)
T KOG2462|consen 205 GHIRTHTGEKPFS-----CPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSES 265 (279)
T ss_pred cccccccCCCCcc-----CCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence 9999999999998 889999999999999999999999999999999999999999999753
No 3
>KOG1074|consensus
Probab=99.93 E-value=4.9e-27 Score=215.00 Aligned_cols=50 Identities=36% Similarity=0.747 Sum_probs=48.9
Q ss_pred CcCccCCCCCChHHHHHHHHHcCCCCceecccccccccChhhHHHHhhhC
Q psy7185 262 SVGACGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAKSSNLKNHMTIH 311 (311)
Q Consensus 262 ~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~F~~~~~L~~H~r~H 311 (311)
.|..|++.|...+.|..|+++|+++|||.|.+|++.|..+.+|..||.+|
T Consensus 881 ~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH 930 (958)
T KOG1074|consen 881 VCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKVHMGTH 930 (958)
T ss_pred hhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhhhhccc
Confidence 59999999999999999999999999999999999999999999999987
No 4
>KOG1074|consensus
Probab=99.84 E-value=1.1e-21 Score=180.31 Aligned_cols=83 Identities=36% Similarity=0.726 Sum_probs=76.1
Q ss_pred CCccccCcCccccCChhhHHHHHHhhcCCCCccCCCCCCCCCChHHHHHHHHHhcCC----CCccCC---CCCCccCCch
Q psy7185 141 KTMLPCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGE----RPHVCP---ICFKTFTASS 213 (311)
Q Consensus 141 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~----~~~~C~---~C~~~f~~~~ 213 (311)
..+-+|-+|-++..-+..|+.|+++|+|++||+|++||+.|.++.+|+.|+..|... ..|.|+ +|-+.|.+.-
T Consensus 603 TdPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V 682 (958)
T KOG1074|consen 603 TDPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAV 682 (958)
T ss_pred CCccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhcccccccc
Confidence 355789999999999999999999999999999999999999999999999998654 347899 9999999999
Q ss_pred hHHHHHHhcC
Q psy7185 214 NLYYHRITHV 223 (311)
Q Consensus 214 ~l~~H~~~h~ 223 (311)
.|..|++.|.
T Consensus 683 ~lpQhIriH~ 692 (958)
T KOG1074|consen 683 TLPQHIRIHL 692 (958)
T ss_pred cccceEEeec
Confidence 9999999887
No 5
>KOG3608|consensus
Probab=99.84 E-value=1.7e-21 Score=162.82 Aligned_cols=162 Identities=30% Similarity=0.520 Sum_probs=113.3
Q ss_pred CCCccccCcCccccCChhhHHHHHHhhc--CCCCccCCCCCCCCCChHHHHHHHHHhcCCCCccCCCCCCccCCchhHHH
Q psy7185 140 SKTMLPCTVCGKSFDRPSLLKRHTRTHT--GEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYY 217 (311)
Q Consensus 140 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~--~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~ 217 (311)
.++...|+.||.-|.+...|..|++..+ ...+|.|..|.+.|.+...|..|+..|- .-|+|+.|+.+....++|.+
T Consensus 204 ~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHv--n~ykCplCdmtc~~~ssL~~ 281 (467)
T KOG3608|consen 204 NEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHV--NCYKCPLCDMTCSSASSLTT 281 (467)
T ss_pred CCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhh--hcccccccccCCCChHHHHH
Confidence 3444455555555555555555544322 2345666666666666666666666553 33788888888888888888
Q ss_pred HHH-hcCCCCCCcCCCCCCcCCChhHHHHHHHhhcCCCCcccCCCCcCc--cCCCCCChHHHHHHHHHcC-C--CCceec
Q psy7185 218 HRI-THVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGA--CGKSFPTPGNLRTHSYSHS-G--SWPYKC 291 (311)
Q Consensus 218 H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~-~--~~~~~C 291 (311)
|++ .|...+||+|+.|.+.|.+.++|.+|...|. +..|. |.. |...|.+...|++|++.++ | +.+|.|
T Consensus 282 H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~-----C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~C 355 (467)
T KOG3608|consen 282 HIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQ-----CEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYAC 355 (467)
T ss_pred HHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-cccee-----cCCCCCcHHHHHHHHHHHHHHHhccCCCCCceee
Confidence 866 4667788888888888888888888888776 55566 444 8888888888888877654 4 346999
Q ss_pred ccccccccChhhHHHHhh
Q psy7185 292 TVCIKGFAKSSNLKNHMT 309 (311)
Q Consensus 292 ~~C~~~F~~~~~L~~H~r 309 (311)
..|++.|++..+|.+|++
T Consensus 356 H~Cdr~ft~G~~L~~HL~ 373 (467)
T KOG3608|consen 356 HCCDRFFTSGKSLSAHLM 373 (467)
T ss_pred ecchhhhccchhHHHHHH
Confidence 999999999999999975
No 6
>KOG3623|consensus
Probab=99.84 E-value=6.7e-22 Score=178.81 Aligned_cols=77 Identities=36% Similarity=0.765 Sum_probs=75.1
Q ss_pred CcCCCCCCcCCChhHHHHHHHhhcCCCCcccCCCCcCccCCCCCChHHHHHHHHHcCCCCceecccccccccChhhHHHH
Q psy7185 228 HKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAKSSNLKNH 307 (311)
Q Consensus 228 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~F~~~~~L~~H 307 (311)
|.|+.|+|+|...+.|.+|...|+|.+||+ |.+|.+.|..+-.|..|++.|.|||||+|+.|+|+|+....+..|
T Consensus 895 yaCDqCDK~FqKqSSLaRHKYEHsGqRPyq-----C~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQH 969 (1007)
T KOG3623|consen 895 YACDQCDKAFQKQSSLARHKYEHSGQRPYQ-----CIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQH 969 (1007)
T ss_pred chHHHHHHHHHhhHHHHHhhhhhcCCCCcc-----cchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhh
Confidence 999999999999999999999999999999 889999999999999999999999999999999999999999999
Q ss_pred hh
Q psy7185 308 MT 309 (311)
Q Consensus 308 ~r 309 (311)
|.
T Consensus 970 MN 971 (1007)
T KOG3623|consen 970 MN 971 (1007)
T ss_pred hc
Confidence 84
No 7
>KOG3608|consensus
Probab=99.84 E-value=3e-21 Score=161.39 Aligned_cols=160 Identities=28% Similarity=0.503 Sum_probs=146.5
Q ss_pred ccccCcCccccCChhhHHHHHHhhcCCCCccCCCCCCCCCChHHHHHHHHHhc--CCCCccCCCCCCccCCchhHHHHHH
Q psy7185 143 MLPCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHS--GERPHVCPICFKTFTASSNLYYHRI 220 (311)
Q Consensus 143 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--~~~~~~C~~C~~~f~~~~~l~~H~~ 220 (311)
+..+..|-+.+.++..|+.|++.|++++...|+.||..|.++..|..|++..+ ...+|.|..|.+.|.+...|..|+.
T Consensus 179 ~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~ 258 (467)
T KOG3608|consen 179 MCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVV 258 (467)
T ss_pred eccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHH
Confidence 34445699999999999999999999999999999999999999999987543 4568999999999999999999999
Q ss_pred hcCCCCCCcCCCCCCcCCChhHHHHHHH-hhcCCCCcccCCCCcCccCCCCCChHHHHHHHHHcCCCCceeccc--cccc
Q psy7185 221 THVKDKPHKCGACGKSFPTPGNLRTHSY-SHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHSGSWPYKCTV--CIKG 297 (311)
Q Consensus 221 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~--C~~~ 297 (311)
.|. .-|+|+.|..+....++|..|++ .|...+|++ |+.|++.|.+.+.|.+|..+|. +-.|+|+. |.++
T Consensus 259 rHv--n~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfK-----Cd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s 330 (467)
T KOG3608|consen 259 RHV--NCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFK-----CDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYS 330 (467)
T ss_pred Hhh--hcccccccccCCCChHHHHHHHHhhhccCCCcc-----ccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHH
Confidence 996 45999999999999999999999 677889998 8899999999999999999997 77899998 9999
Q ss_pred ccChhhHHHHhhh
Q psy7185 298 FAKSSNLKNHMTI 310 (311)
Q Consensus 298 F~~~~~L~~H~r~ 310 (311)
|.+...|.+|++-
T Consensus 331 ~r~~~q~~~H~~e 343 (467)
T KOG3608|consen 331 VRTYTQMRRHFLE 343 (467)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
No 8
>KOG3576|consensus
Probab=99.71 E-value=3.4e-18 Score=132.75 Aligned_cols=116 Identities=34% Similarity=0.616 Sum_probs=102.4
Q ss_pred CCCccccCcCccccCChhhHHHHHHhhcCCCCccCCCCCCCCCChHHHHHHHHHhcCCCCccCCCCCCccCCchhHHHHH
Q psy7185 140 SKTMLPCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHR 219 (311)
Q Consensus 140 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~ 219 (311)
....|.|..|++.|.....|.+|++-|...+.+.|..||+.|....+|.+|+++|+|.+||+|..|++.|..+-.|..|+
T Consensus 114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl 193 (267)
T KOG3576|consen 114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHL 193 (267)
T ss_pred CCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HhcCC-----------CCCCcCCCCCCcCCChhHHHHHHHhhcCCCC
Q psy7185 220 ITHVK-----------DKPHKCGACGKSFPTPGNLRTHSYSHSGSWP 255 (311)
Q Consensus 220 ~~h~~-----------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 255 (311)
+.-+| .+-|.|..||.+-.....+..|++.|+..-|
T Consensus 194 ~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Sp 240 (267)
T KOG3576|consen 194 KKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSP 240 (267)
T ss_pred HHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCH
Confidence 76554 3568899999988888888889888876544
No 9
>KOG3576|consensus
Probab=99.67 E-value=1.2e-17 Score=129.72 Aligned_cols=121 Identities=30% Similarity=0.486 Sum_probs=100.0
Q ss_pred CCCCccCCCCCCCCCChHHHHHHHHHhcCCCCccCCCCCCccCCchhHHHHHHhcCCCCCCcCCCCCCcCCChhHHHHHH
Q psy7185 168 GEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHS 247 (311)
Q Consensus 168 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~ 247 (311)
+...|.|.+|++.|.-..-|.+|++-|...+.+.|..||+.|....+|.+|+++|+|.+||+|..|+++|..+-.|..|+
T Consensus 114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl 193 (267)
T KOG3576|consen 114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHL 193 (267)
T ss_pred CCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHH
Confidence 45669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCC---Cccc---CCCCcCccCCCCCChHHHHHHHHHcCCCCc
Q psy7185 248 YSHSGSW---PYKI---HAPSVGACGKSFPTPGNLRTHSYSHSGSWP 288 (311)
Q Consensus 248 ~~h~~~~---~~~~---~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~ 288 (311)
+.-+|.. .|+. ..+.|..||..-.....+..|+..|+..-|
T Consensus 194 ~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Sp 240 (267)
T KOG3576|consen 194 KKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSP 240 (267)
T ss_pred HHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCH
Confidence 8776642 1111 123477777777777777777777665433
No 10
>KOG3623|consensus
Probab=99.54 E-value=2.3e-15 Score=137.00 Aligned_cols=108 Identities=30% Similarity=0.588 Sum_probs=94.5
Q ss_pred CccccCcCccccCChhhHHHHHHhhc--CCCCccCCCCCCCCCChHHHHHHHHHhcCC-------------CCccCCCCC
Q psy7185 142 TMLPCTVCGKSFDRPSLLKRHTRTHT--GEKPHVCDVCSKGFSTSSSLNTHRRIHSGE-------------RPHVCPICF 206 (311)
Q Consensus 142 ~~~~C~~C~~~f~~~~~l~~H~~~h~--~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-------------~~~~C~~C~ 206 (311)
....|++|...+.....|+.|++.-+ .+..|.|..|..+|..+..|.+|+..|... +.|+|..|+
T Consensus 209 qlltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECg 288 (1007)
T KOG3623|consen 209 QLLTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECG 288 (1007)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccc
Confidence 45889999999999999999988543 345699999999999999999999988542 448999999
Q ss_pred CccCCchhHHHHHHhcCCCCCCcCCCCCCcCCChhHHHHHHHh
Q psy7185 207 KTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYS 249 (311)
Q Consensus 207 ~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~ 249 (311)
+.|..+..|+.|+++|.|+|||.|+.|+|.|...+.+..||..
T Consensus 289 KAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSS 331 (1007)
T KOG3623|consen 289 KAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSS 331 (1007)
T ss_pred hhhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccccc
Confidence 9999999999999999999999999999999999999998754
No 11
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.43 E-value=5.1e-13 Score=122.33 Aligned_cols=144 Identities=17% Similarity=0.310 Sum_probs=113.4
Q ss_pred CccccCcCccccCChhhHHHHHHhhcCCCCccCCC--CCCCCCChHHHHHHHHHhcCCCCccCCCCCCccCCchhHHHHH
Q psy7185 142 TMLPCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDV--CSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHR 219 (311)
Q Consensus 142 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~ 219 (311)
..-.|+.|...... ..|..|.... ....-.|+. |+..|. +..+ +..+.|+.|++.|. ...|..|+
T Consensus 406 ~~V~C~NC~~~i~l-~~l~lHe~~C-~r~~V~Cp~~~Cg~v~~-r~el---------~~H~~C~~Cgk~f~-~s~LekH~ 472 (567)
T PLN03086 406 DTVECRNCKHYIPS-RSIALHEAYC-SRHNVVCPHDGCGIVLR-VEEA---------KNHVHCEKCGQAFQ-QGEMEKHM 472 (567)
T ss_pred CeEECCCCCCccch-hHHHHHHhhC-CCcceeCCcccccceee-cccc---------ccCccCCCCCCccc-hHHHHHHH
Confidence 34579999987765 6677887543 334456874 999883 2333 33369999999996 67899999
Q ss_pred HhcCCCCCCcCCCCCCcCCChhHHHHHHHhhcCCCCcccCCCCcCccCCCCCC----------hHHHHHHHHHcCCCCce
Q psy7185 220 ITHVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPT----------PGNLRTHSYSHSGSWPY 289 (311)
Q Consensus 220 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~C~~C~~~f~~----------~~~L~~H~~~h~~~~~~ 289 (311)
..++ +++.|+ ||+.+ .+..|..|+..|.+.+++. |..|++.|.. .+.|..|.... |.+++
T Consensus 473 ~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~-----C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~ 542 (567)
T PLN03086 473 KVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLIT-----CRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTA 542 (567)
T ss_pred HhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCcee-----CCCCCCccccCccccchhhhhhhHHHHHHhc-CCcce
Confidence 9985 889999 99765 6799999999999999988 8899999952 45899999886 99999
Q ss_pred ecccccccccChhhHHHHhh
Q psy7185 290 KCTVCIKGFAKSSNLKNHMT 309 (311)
Q Consensus 290 ~C~~C~~~F~~~~~L~~H~r 309 (311)
.|..||+.|..+ .|..|+.
T Consensus 543 ~C~~Cgk~Vrlr-dm~~H~~ 561 (567)
T PLN03086 543 PCDSCGRSVMLK-EMDIHQI 561 (567)
T ss_pred EccccCCeeeeh-hHHHHHH
Confidence 999999999765 6677753
No 12
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.19 E-value=4.2e-11 Score=109.92 Aligned_cols=118 Identities=20% Similarity=0.468 Sum_probs=94.9
Q ss_pred ccccCc--CccccCChhhHHHHHHhhcCCCCccCCCCCCCCCChHHHHHHHHHhcCCCCccCCCCCCccCCchhHHHHHH
Q psy7185 143 MLPCTV--CGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRI 220 (311)
Q Consensus 143 ~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~ 220 (311)
.-.|+. |+..|.. ..+..| +.|+.|++.|. ...|..|+..++ .++.|+ |++.+ .+..|..|+.
T Consensus 433 ~V~Cp~~~Cg~v~~r-~el~~H---------~~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~ 497 (567)
T PLN03086 433 NVVCPHDGCGIVLRV-EEAKNH---------VHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQA 497 (567)
T ss_pred ceeCCcccccceeec-cccccC---------ccCCCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhh
Confidence 345874 9998843 444444 58999999996 688999999985 789999 99765 6689999999
Q ss_pred hcCCCCCCcCCCCCCcCCC----------hhHHHHHHHhhcCCCCcccCCCCcCccCCCCCChHHHHHHHHH
Q psy7185 221 THVKDKPHKCGACGKSFPT----------PGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYS 282 (311)
Q Consensus 221 ~h~~~~~~~C~~C~~~f~~----------~~~l~~H~~~h~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~ 282 (311)
.|.+.+++.|+.|++.|.. ...|..|+... |.+++. |..|++.+..+ .|..|+..
T Consensus 498 thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~-----C~~Cgk~Vrlr-dm~~H~~~ 562 (567)
T PLN03086 498 STCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAP-----CDSCGRSVMLK-EMDIHQIA 562 (567)
T ss_pred ccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcceE-----ccccCCeeeeh-hHHHHHHH
Confidence 9999999999999999952 35799999885 888887 88999988765 56777654
No 13
>PHA00733 hypothetical protein
Probab=99.08 E-value=1.2e-10 Score=87.57 Aligned_cols=82 Identities=22% Similarity=0.394 Sum_probs=49.2
Q ss_pred CCCccCCCCCCCCCChHHHHHH--H---HHhcCCCCccCCCCCCccCCchhHHHHHHhcCCCCCCcCCCCCCcCCChhHH
Q psy7185 169 EKPHVCDVCSKGFSTSSSLNTH--R---RIHSGERPHVCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNL 243 (311)
Q Consensus 169 ~~~~~C~~C~~~f~~~~~l~~H--~---~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l 243 (311)
.+++.|.+|...|.....|..+ + ..+++.++|.|+.|++.|.....|..|++.+ +.+|.|+.|++.|.....|
T Consensus 38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL 115 (128)
T PHA00733 38 QKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDST 115 (128)
T ss_pred hhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHH
Confidence 3456666666655555444433 1 1223356677777777777777777676654 2456777777777777777
Q ss_pred HHHHHhhcC
Q psy7185 244 RTHSYSHSG 252 (311)
Q Consensus 244 ~~H~~~h~~ 252 (311)
..|+...++
T Consensus 116 ~~H~~~~h~ 124 (128)
T PHA00733 116 LDHVCKKHN 124 (128)
T ss_pred HHHHHHhcC
Confidence 777665554
No 14
>KOG3993|consensus
Probab=99.04 E-value=2e-11 Score=105.32 Aligned_cols=168 Identities=20% Similarity=0.293 Sum_probs=98.8
Q ss_pred CccccCcCccccCChhhHHHHHHhhcCCCCccCCCCCCCCCChHHHHHHHHHhcCCCCccC---CCCCCccCCchhHHHH
Q psy7185 142 TMLPCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVC---PICFKTFTASSNLYYH 218 (311)
Q Consensus 142 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C---~~C~~~f~~~~~l~~H 218 (311)
+-|.|..|...|.+.-.|.+|.-.-.-...|+|+.|++.|+...+|..|.++|.....-.= +-=..........+.-
T Consensus 266 GdyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea 345 (500)
T KOG3993|consen 266 GDYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEA 345 (500)
T ss_pred HHHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhc
Confidence 4599999999999999999996544444569999999999999999999999954321000 0000000000000000
Q ss_pred HHh--cCCCCCCcCCCCCCcCCChhHHHHHHHhhcCCCCccc--------------------------------------
Q psy7185 219 RIT--HVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKI-------------------------------------- 258 (311)
Q Consensus 219 ~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~-------------------------------------- 258 (311)
.+. -..+..|.|..|++.|.....|+.|+.+|+.....+.
T Consensus 346 ~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a 425 (500)
T KOG3993|consen 346 ERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVA 425 (500)
T ss_pred cccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeee
Confidence 000 0112246666666666666666666655542110000
Q ss_pred ---CCCCcCccCCCCCChHHHHHHHHHcCCCCceecccccccccChhhHHHHhh
Q psy7185 259 ---HAPSVGACGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAKSSNLKNHMT 309 (311)
Q Consensus 259 ---~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~F~~~~~L~~H~r 309 (311)
...-|+.|+..+..+..--.+.+.-..+.-|.|.+|.-+|.+..+|.+|+.
T Consensus 426 ~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin 479 (500)
T KOG3993|consen 426 GSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHIN 479 (500)
T ss_pred ccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhh
Confidence 001255566555554433333333334556999999999999999999975
No 15
>PHA00733 hypothetical protein
Probab=98.98 E-value=6.3e-10 Score=83.68 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=52.9
Q ss_pred CCCccCCCCCCccCCchhHHHH--HH---hcCCCCCCcCCCCCCcCCChhHHHHHHHhhcCCCCcccCCCCcCccCCCCC
Q psy7185 197 ERPHVCPICFKTFTASSNLYYH--RI---THVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFP 271 (311)
Q Consensus 197 ~~~~~C~~C~~~f~~~~~l~~H--~~---~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~C~~C~~~f~ 271 (311)
.+++.|.+|...|.....|..+ +. .+.+.++|.|+.|++.|.+...|..|++.+ ..++. |..|++.|.
T Consensus 38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~-----C~~CgK~F~ 110 (128)
T PHA00733 38 QKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKV-----CPVCGKEFR 110 (128)
T ss_pred hhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCcc-----CCCCCCccC
Confidence 4567788887777776666555 21 223466777777777777777777777754 22333 667777777
Q ss_pred ChHHHHHHHHHcCC
Q psy7185 272 TPGNLRTHSYSHSG 285 (311)
Q Consensus 272 ~~~~L~~H~~~h~~ 285 (311)
....|..|+...++
T Consensus 111 ~~~sL~~H~~~~h~ 124 (128)
T PHA00733 111 NTDSTLDHVCKKHN 124 (128)
T ss_pred CHHHHHHHHHHhcC
Confidence 77777777665443
No 16
>PHA02768 hypothetical protein; Provisional
Probab=98.89 E-value=8.8e-10 Score=68.31 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=32.0
Q ss_pred CcCccCCCCCChHHHHHHHHHcCCCCceecccccccccChhhHH
Q psy7185 262 SVGACGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAKSSNLK 305 (311)
Q Consensus 262 ~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~F~~~~~L~ 305 (311)
.|+.||+.|...++|..|+++|+ ++|+|..|++.|.+.+.|.
T Consensus 7 ~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~ 48 (55)
T PHA02768 7 ECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI 48 (55)
T ss_pred CcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence 37788888888888888888877 6778888888887776653
No 17
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.82 E-value=2.9e-09 Score=56.41 Aligned_cols=26 Identities=50% Similarity=0.974 Sum_probs=23.8
Q ss_pred HHHHHHHHcCCCCceecccccccccC
Q psy7185 275 NLRTHSYSHSGSWPYKCTVCIKGFAK 300 (311)
Q Consensus 275 ~L~~H~~~h~~~~~~~C~~C~~~F~~ 300 (311)
+|..|+++|++++||+|++|+++|.+
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence 58899999999999999999999974
No 18
>PHA02768 hypothetical protein; Provisional
Probab=98.80 E-value=2.4e-09 Score=66.41 Aligned_cols=39 Identities=21% Similarity=0.356 Sum_probs=18.2
Q ss_pred ccCCCCCCccCCchhHHHHHHhcCCCCCCcCCCCCCcCCCh
Q psy7185 200 HVCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTP 240 (311)
Q Consensus 200 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 240 (311)
|.|+.||+.|....+|..|+++|+ ++|+|..|++.|...
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~ 44 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRT 44 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccc
Confidence 444444444444444444444444 344444444444433
No 19
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.51 E-value=3.4e-08 Score=52.28 Aligned_cols=23 Identities=57% Similarity=0.904 Sum_probs=11.4
Q ss_pred HHHHHHhcCCCCCCcCCCCCCcC
Q psy7185 215 LYYHRITHVKDKPHKCGACGKSF 237 (311)
Q Consensus 215 l~~H~~~h~~~~~~~C~~C~~~f 237 (311)
|..|++.|++++||.|+.|++.|
T Consensus 2 l~~H~~~H~~~k~~~C~~C~k~F 24 (26)
T PF13465_consen 2 LRRHMRTHTGEKPYKCPYCGKSF 24 (26)
T ss_dssp HHHHHHHHSSSSSEEESSSSEEE
T ss_pred HHHHhhhcCCCCCCCCCCCcCee
Confidence 44455555555555555555444
No 20
>KOG3993|consensus
Probab=98.31 E-value=7.6e-08 Score=83.57 Aligned_cols=25 Identities=36% Similarity=0.607 Sum_probs=22.3
Q ss_pred CCcCccCCCCCChHHHHHHHHHcCC
Q psy7185 261 PSVGACGKSFPTPGNLRTHSYSHSG 285 (311)
Q Consensus 261 ~~C~~C~~~f~~~~~L~~H~~~h~~ 285 (311)
+.|..|++.|.+...|+.|+.+|+.
T Consensus 357 ~~C~~C~KkFrRqAYLrKHqlthq~ 381 (500)
T KOG3993|consen 357 FSCHTCGKKFRRQAYLRKHQLTHQR 381 (500)
T ss_pred eecHHhhhhhHHHHHHHHhHHhhhc
Confidence 4699999999999999999988863
No 21
>PHA00732 hypothetical protein
Probab=98.22 E-value=1.1e-06 Score=60.03 Aligned_cols=48 Identities=33% Similarity=0.488 Sum_probs=35.3
Q ss_pred CCcCCCCCCcCCChhHHHHHHHh-hcCCCCcccCCCCcCccCCCCCChHHHHHHHHHcCC
Q psy7185 227 PHKCGACGKSFPTPGNLRTHSYS-HSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHSG 285 (311)
Q Consensus 227 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~ 285 (311)
||.|+.|++.|.+...|..|++. |.+ +. |+.|++.|. .|..|..+...
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~---~~-----C~~CgKsF~---~l~~H~~~~~~ 49 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHTL---TK-----CPVCNKSYR---RLNQHFYSQYD 49 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccCC---Cc-----cCCCCCEeC---ChhhhhcccCC
Confidence 57888888888888888888875 442 22 888888887 46777765543
No 22
>PHA00732 hypothetical protein
Probab=98.21 E-value=1.2e-06 Score=59.79 Aligned_cols=50 Identities=34% Similarity=0.466 Sum_probs=30.5
Q ss_pred CccCCCCCCccCCchhHHHHHHh-cCCCCCCcCCCCCCcCCChhHHHHHHHhhcCCC
Q psy7185 199 PHVCPICFKTFTASSNLYYHRIT-HVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSW 254 (311)
Q Consensus 199 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~ 254 (311)
||.|..|++.|.....|..|++. |. ++.|+.|++.|. .+..|+++..+.+
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~~~~~~ 51 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYSQYDIE 51 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---ChhhhhcccCCcc
Confidence 35666666666666666666663 43 246777777775 3666665555443
No 23
>PHA00616 hypothetical protein
Probab=98.18 E-value=5.7e-07 Score=53.08 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=13.5
Q ss_pred CcCCCCCCcCCChhHHHHHHHhhcCCCCc
Q psy7185 228 HKCGACGKSFPTPGNLRTHSYSHSGSWPY 256 (311)
Q Consensus 228 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~ 256 (311)
|+|+.||+.|...++|..|++.|++++++
T Consensus 2 YqC~~CG~~F~~~s~l~~H~r~~hg~~~~ 30 (44)
T PHA00616 2 YQCLRCGGIFRKKKEVIEHLLSVHKQNKL 30 (44)
T ss_pred CccchhhHHHhhHHHHHHHHHHhcCCCcc
Confidence 44444444444444444444444444443
No 24
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=98.17 E-value=7.8e-07 Score=45.69 Aligned_cols=23 Identities=57% Similarity=1.039 Sum_probs=20.3
Q ss_pred eecccccccccChhhHHHHhhhC
Q psy7185 289 YKCTVCIKGFAKSSNLKNHMTIH 311 (311)
Q Consensus 289 ~~C~~C~~~F~~~~~L~~H~r~H 311 (311)
|+|+.|++.|.++..|.+|+++|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhHC
Confidence 78999999999999999998875
No 25
>PHA00616 hypothetical protein
Probab=98.15 E-value=9.9e-07 Score=52.07 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=32.1
Q ss_pred CcCccCCCCCChHHHHHHHHHcCCCCceecccccccc
Q psy7185 262 SVGACGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGF 298 (311)
Q Consensus 262 ~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~F 298 (311)
.|+.||+.|...+.|..|++.|+++++|.|+.=-..|
T Consensus 3 qC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~~y~~f 39 (44)
T PHA00616 3 QCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEYFYIYF 39 (44)
T ss_pred ccchhhHHHhhHHHHHHHHHHhcCCCccceeEEEEEE
Confidence 3999999999999999999999999999998643333
No 26
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.90 E-value=6.8e-06 Score=59.30 Aligned_cols=22 Identities=32% Similarity=0.791 Sum_probs=10.9
Q ss_pred ceecccccccccChhhHHHHhh
Q psy7185 288 PYKCTVCIKGFAKSSNLKNHMT 309 (311)
Q Consensus 288 ~~~C~~C~~~F~~~~~L~~H~r 309 (311)
.+.|.+|++.|.+...|..||+
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~ 71 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMR 71 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHH
T ss_pred CCCCCccCCCCcCHHHHHHHHc
Confidence 3555555555555555555554
No 27
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.88 E-value=2.9e-05 Score=49.11 Aligned_cols=48 Identities=29% Similarity=0.483 Sum_probs=23.5
Q ss_pred cccCcCccccCChhhHHHHHHhhcC--CCCccCCCCCCCCCChHHHHHHHHHh
Q psy7185 144 LPCTVCGKSFDRPSLLKRHTRTHTG--EKPHVCDVCSKGFSTSSSLNTHRRIH 194 (311)
Q Consensus 144 ~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~l~~H~~~h 194 (311)
|.||+|++ ..+...|..|....+. .+.+.|++|...+. .+|..|+..+
T Consensus 3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~ 52 (54)
T PF05605_consen 3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQ 52 (54)
T ss_pred cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHh
Confidence 55666666 3334556666543222 23455555555432 2555555444
No 28
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.87 E-value=3.3e-05 Score=48.85 Aligned_cols=6 Identities=67% Similarity=1.608 Sum_probs=2.2
Q ss_pred CCCCCC
Q psy7185 230 CGACGK 235 (311)
Q Consensus 230 C~~C~~ 235 (311)
||+|++
T Consensus 5 CP~C~~ 10 (54)
T PF05605_consen 5 CPYCGK 10 (54)
T ss_pred CCCCCC
Confidence 333333
No 29
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.84 E-value=1e-05 Score=43.20 Aligned_cols=24 Identities=38% Similarity=0.789 Sum_probs=22.0
Q ss_pred ceecccccccccChhhHHHHhhhC
Q psy7185 288 PYKCTVCIKGFAKSSNLKNHMTIH 311 (311)
Q Consensus 288 ~~~C~~C~~~F~~~~~L~~H~r~H 311 (311)
||+|..|++.|.+...|..|++.|
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h 24 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSH 24 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTT
T ss_pred CCCCCccCCccCChhHHHHHhHHh
Confidence 689999999999999999999876
No 30
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.75 E-value=1.3e-05 Score=41.37 Aligned_cols=23 Identities=39% Similarity=0.934 Sum_probs=17.7
Q ss_pred eecccccccccChhhHHHHhhhC
Q psy7185 289 YKCTVCIKGFAKSSNLKNHMTIH 311 (311)
Q Consensus 289 ~~C~~C~~~F~~~~~L~~H~r~H 311 (311)
|.|++|++.|.+...|..|+++|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHhh
Confidence 67888999999999999888764
No 31
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.71 E-value=1.4e-05 Score=40.91 Aligned_cols=21 Identities=48% Similarity=0.910 Sum_probs=10.3
Q ss_pred cCCCCCCcCCChhHHHHHHHh
Q psy7185 229 KCGACGKSFPTPGNLRTHSYS 249 (311)
Q Consensus 229 ~C~~C~~~f~~~~~l~~H~~~ 249 (311)
.|+.|++.|.+...|..|++.
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 2 KCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHhH
Confidence 444555555555555555443
No 32
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.49 E-value=6.1e-05 Score=38.71 Aligned_cols=23 Identities=43% Similarity=0.888 Sum_probs=10.7
Q ss_pred CcCCCCCCcCCChhHHHHHHHhh
Q psy7185 228 HKCGACGKSFPTPGNLRTHSYSH 250 (311)
Q Consensus 228 ~~C~~C~~~f~~~~~l~~H~~~h 250 (311)
|.|++|++.|.+...|..|+..|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHhh
Confidence 34555555555555555555444
No 33
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.48 E-value=5.6e-05 Score=54.44 Aligned_cols=72 Identities=24% Similarity=0.377 Sum_probs=15.5
Q ss_pred CCCCCCCCCChHHHHHHHHHhcCCCCccCCCCCCccCCchhHHHHHHhcCCCCCCcCCCCCCcCCChhHHHHHHHhh
Q psy7185 174 CDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSH 250 (311)
Q Consensus 174 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h 250 (311)
|..|+..|.+...|..|+...++-..- ....+.....+..+.+... ...+.|..|++.|.+...|..|++.+
T Consensus 2 C~~C~~~f~~~~~l~~H~~~~H~~~~~----~~~~l~~~~~~~~~~~~~~-~~~~~C~~C~~~f~s~~~l~~Hm~~~ 73 (100)
T PF12756_consen 2 CLFCDESFSSVDDLLQHMKKKHGFDIP----DQKYLVDPNRLLNYLRKKV-KESFRCPYCNKTFRSREALQEHMRSK 73 (100)
T ss_dssp ----------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred ccccccccccccccccccccccccccc----ccccccccccccccccccc-CCCCCCCccCCCCcCHHHHHHHHcCc
Confidence 555555555555555555444332110 0111112222322322211 12466777777777767777776643
No 34
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.42 E-value=5.2e-05 Score=63.89 Aligned_cols=25 Identities=36% Similarity=0.715 Sum_probs=22.3
Q ss_pred CCCceecccccccccChhhHHHHhh
Q psy7185 285 GSWPYKCTVCIKGFAKSSNLKNHMT 309 (311)
Q Consensus 285 ~~~~~~C~~C~~~F~~~~~L~~H~r 309 (311)
..|||.|++|+|+|.....|..|..
T Consensus 395 ~~KPYrCevC~KRYKNlNGLKYHr~ 419 (423)
T COG5189 395 KDKPYRCEVCDKRYKNLNGLKYHRK 419 (423)
T ss_pred cCCceeccccchhhccCccceeccc
Confidence 4689999999999999999999853
No 35
>smart00355 ZnF_C2H2 zinc finger.
Probab=97.29 E-value=0.00013 Score=38.13 Aligned_cols=23 Identities=48% Similarity=0.860 Sum_probs=16.6
Q ss_pred eecccccccccChhhHHHHhhhC
Q psy7185 289 YKCTVCIKGFAKSSNLKNHMTIH 311 (311)
Q Consensus 289 ~~C~~C~~~F~~~~~L~~H~r~H 311 (311)
|.|+.|++.|.....|..|++.|
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H 23 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTH 23 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHh
Confidence 46777777777777777777654
No 36
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.26 E-value=9.8e-05 Score=39.32 Aligned_cols=23 Identities=43% Similarity=0.917 Sum_probs=13.1
Q ss_pred CcCCCCCCcCCChhHHHHHHHhh
Q psy7185 228 HKCGACGKSFPTPGNLRTHSYSH 250 (311)
Q Consensus 228 ~~C~~C~~~f~~~~~l~~H~~~h 250 (311)
|.|..|++.|.+...|..|++.|
T Consensus 2 ~~C~~C~~~F~~~~~l~~H~~~h 24 (27)
T PF13912_consen 2 FECDECGKTFSSLSALREHKRSH 24 (27)
T ss_dssp EEETTTTEEESSHHHHHHHHCTT
T ss_pred CCCCccCCccCChhHHHHHhHHh
Confidence 45555555555555555555544
No 37
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=97.08 E-value=0.00027 Score=36.82 Aligned_cols=22 Identities=27% Similarity=0.822 Sum_probs=19.2
Q ss_pred eecccccccccChhhHHHHhhh
Q psy7185 289 YKCTVCIKGFAKSSNLKNHMTI 310 (311)
Q Consensus 289 ~~C~~C~~~F~~~~~L~~H~r~ 310 (311)
|.|.+|++.|.+...|..|++.
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRS 22 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHCc
Confidence 6789999999999999999875
No 38
>KOG2231|consensus
Probab=97.02 E-value=0.0022 Score=60.67 Aligned_cols=47 Identities=21% Similarity=0.460 Sum_probs=22.4
Q ss_pred cCCCCCCccCCchhHHHHHHhcCCCCCCcCCCC------CCcCCChhHHHHHHHhhc
Q psy7185 201 VCPICFKTFTASSNLYYHRITHVKDKPHKCGAC------GKSFPTPGNLRTHSYSHS 251 (311)
Q Consensus 201 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C------~~~f~~~~~l~~H~~~h~ 251 (311)
.|..|...|.....|.+|++.++ |.|..| +.-|.....|..|.+.+|
T Consensus 184 ~C~~C~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H 236 (669)
T KOG2231|consen 184 LCKFCHERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH 236 (669)
T ss_pred cchhhhhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC
Confidence 45555555555555555555433 333333 223444455555555444
No 39
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=96.96 E-value=0.00027 Score=59.68 Aligned_cols=17 Identities=24% Similarity=0.554 Sum_probs=9.0
Q ss_pred cCccCCCCCChHHHHHH
Q psy7185 263 VGACGKSFPTPGNLRTH 279 (311)
Q Consensus 263 C~~C~~~f~~~~~L~~H 279 (311)
|+.|+++|.+...|+-|
T Consensus 401 CevC~KRYKNlNGLKYH 417 (423)
T COG5189 401 CEVCDKRYKNLNGLKYH 417 (423)
T ss_pred ccccchhhccCccceec
Confidence 44555555555555544
No 40
>KOG2231|consensus
Probab=96.86 E-value=0.0021 Score=60.71 Aligned_cols=124 Identities=19% Similarity=0.372 Sum_probs=79.7
Q ss_pred cCCCCCCCCCChHHHHHHHHHhcCCCCccCCCCCC---------ccCCchhHHHHHHhcCC-CC----CCcCCCCCCcCC
Q psy7185 173 VCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFK---------TFTASSNLYYHRITHVK-DK----PHKCGACGKSFP 238 (311)
Q Consensus 173 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~---------~f~~~~~l~~H~~~h~~-~~----~~~C~~C~~~f~ 238 (311)
.|..| ..|.+...|+.|+..-|. .+.|.+|-. ...+...|..|+..-.. ++ --.|..|...|-
T Consensus 117 ~~~~c-~~~~s~~~Lk~H~~~~H~--~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fl 193 (669)
T KOG2231|consen 117 ECLHC-TEFKSVENLKNHMRDQHK--LHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERFL 193 (669)
T ss_pred CCccc-cchhHHHHHHHHHHHhhh--hhccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhhhhhc
Confidence 46666 666788999999965443 255555531 22344667778764322 22 256999999999
Q ss_pred ChhHHHHHHHhhcCCCCcccCCCCc---CccCCCCCChHHHHHHHHHcCCCCceecc--ccc-ccccChhhHHHHhh
Q psy7185 239 TPGNLRTHSYSHSGSWPYKIHAPSV---GACGKSFPTPGNLRTHSYSHSGSWPYKCT--VCI-KGFAKSSNLKNHMT 309 (311)
Q Consensus 239 ~~~~l~~H~~~h~~~~~~~~~~~~C---~~C~~~f~~~~~L~~H~~~h~~~~~~~C~--~C~-~~F~~~~~L~~H~r 309 (311)
....|.+|++.++-.-.+ | +.++.-|.....|..|.+.++ |.|. .|. +.|.....+..|++
T Consensus 194 d~~el~rH~~~~h~~chf------C~~~~~~neyy~~~~dLe~HfR~~H----flCE~~~C~~~~f~~~~~~ei~lk 260 (669)
T KOG2231|consen 194 DDDELYRHLRFDHEFCHF------CDYKTGQNEYYNDYDDLEEHFRKGH----FLCEEEFCRTKKFYVAFELEIELK 260 (669)
T ss_pred cHHHHHHhhccceeheee------cCcccccchhcccchHHHHHhhhcC----ccccccccccceeeehhHHHHHHH
Confidence 999999999977654222 2 233455677788888887765 7887 673 44544445555554
No 41
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.82 E-value=0.0016 Score=55.74 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=11.9
Q ss_pred cCCCCCCccCCchhHHHHHHhc
Q psy7185 201 VCPICFKTFTASSNLYYHRITH 222 (311)
Q Consensus 201 ~C~~C~~~f~~~~~l~~H~~~h 222 (311)
.|..|...|.+-..|..|++..
T Consensus 222 ~C~FC~~~FYdDDEL~~HcR~~ 243 (493)
T COG5236 222 LCIFCKIYFYDDDELRRHCRLR 243 (493)
T ss_pred hhhhccceecChHHHHHHHHhh
Confidence 4555555555555555555543
No 42
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.72 E-value=0.0019 Score=33.50 Aligned_cols=21 Identities=33% Similarity=0.812 Sum_probs=10.2
Q ss_pred cCCCCCCcCCChhHHHHHHHh
Q psy7185 229 KCGACGKSFPTPGNLRTHSYS 249 (311)
Q Consensus 229 ~C~~C~~~f~~~~~l~~H~~~ 249 (311)
.|..|++.|.+...|..|++.
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~~ 22 (26)
T smart00355 2 RCPECGKVFKSKSALKEHMRT 22 (26)
T ss_pred CCCCCcchhCCHHHHHHHHHH
Confidence 444455555555555554443
No 43
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=96.53 E-value=0.0013 Score=33.86 Aligned_cols=22 Identities=45% Similarity=0.812 Sum_probs=16.4
Q ss_pred eecccccccccChhhHHHHhhhC
Q psy7185 289 YKCTVCIKGFAKSSNLKNHMTIH 311 (311)
Q Consensus 289 ~~C~~C~~~F~~~~~L~~H~r~H 311 (311)
|+|+.|++..+ ...|.+|+++|
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~ 22 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRH 22 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhh
Confidence 68888988887 88888888763
No 44
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=96.50 E-value=0.0012 Score=35.05 Aligned_cols=22 Identities=36% Similarity=0.727 Sum_probs=18.7
Q ss_pred eecccccccccChhhHHHHhhh
Q psy7185 289 YKCTVCIKGFAKSSNLKNHMTI 310 (311)
Q Consensus 289 ~~C~~C~~~F~~~~~L~~H~r~ 310 (311)
|.|..|++.|.+...|..|+++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 6788899999988888888875
No 45
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.41 E-value=0.0027 Score=38.43 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=12.5
Q ss_pred CCCCcCCCCCCcCCChhHHHHHHHhhcCCC
Q psy7185 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSW 254 (311)
Q Consensus 225 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~ 254 (311)
+.|-.|++|+..+.+..+|++|+...|+.+
T Consensus 22 ~~PatCP~C~a~~~~srnLrRHle~~H~~k 51 (54)
T PF09237_consen 22 EQPATCPICGAVIRQSRNLRRHLEIRHFKK 51 (54)
T ss_dssp S--EE-TTT--EESSHHHHHHHHHHHTTTS
T ss_pred CCCCCCCcchhhccchhhHHHHHHHHhccc
Confidence 344455555555555555555555444443
No 46
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=96.36 E-value=0.001 Score=61.01 Aligned_cols=149 Identities=30% Similarity=0.476 Sum_probs=70.3
Q ss_pred cccCcCccccCChhhHHHHHH--hhcCC--CCccCC--CCCCCCCChHHHHHHHHHhcCCCCccCCC--CCCccCCchhH
Q psy7185 144 LPCTVCGKSFDRPSLLKRHTR--THTGE--KPHVCD--VCSKGFSTSSSLNTHRRIHSGERPHVCPI--CFKTFTASSNL 215 (311)
Q Consensus 144 ~~C~~C~~~f~~~~~l~~H~~--~h~~~--~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l 215 (311)
+.|..|...|.....|..|.+ .|.++ +++.|+ .|++.|.....+..|...|.+..++.+.. |...+.....-
T Consensus 290 ~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (467)
T COG5048 290 IKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNN 369 (467)
T ss_pred CCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCccccccccCC
Confidence 444455555555555555544 44444 455554 45555555555555555444444443332 11111111110
Q ss_pred -----HHHHHhcCCCCCCcCCC--CCCcCCChhHHHHHHHhhcCCCCcccCCCCcCccCCCCCChHHHHHHHHHcCCCCc
Q psy7185 216 -----YYHRITHVKDKPHKCGA--CGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHSGSWP 288 (311)
Q Consensus 216 -----~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~ 288 (311)
......-.....+.+.. |...+.....+..|...+-...++.+. +..|...|.....+..|++.|....+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (467)
T COG5048 370 EPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCK---NPPCSKSFNRHYNLIPHKKIHTNHAP 446 (467)
T ss_pred CCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCC---CCcchhhccCcccccccccccccCCc
Confidence 00000011112222221 444444455555555555444443333 67788888888888888887776666
Q ss_pred eeccccc
Q psy7185 289 YKCTVCI 295 (311)
Q Consensus 289 ~~C~~C~ 295 (311)
+.|..+.
T Consensus 447 ~~~~~~~ 453 (467)
T COG5048 447 LLCSILK 453 (467)
T ss_pred eeecccc
Confidence 6555443
No 47
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=96.26 E-value=0.0024 Score=32.79 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=9.9
Q ss_pred CcCCCCCCcCCChhHHHHHHHhh
Q psy7185 228 HKCGACGKSFPTPGNLRTHSYSH 250 (311)
Q Consensus 228 ~~C~~C~~~f~~~~~l~~H~~~h 250 (311)
|+|+.|++... ...|..|++.+
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~ 22 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRH 22 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhh
Confidence 34555555544 44555555544
No 48
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.13 E-value=0.0074 Score=36.60 Aligned_cols=31 Identities=26% Similarity=0.554 Sum_probs=17.3
Q ss_pred CCccccCcCccccCChhhHHHHHHhhcCCCC
Q psy7185 141 KTMLPCTVCGKSFDRPSLLKRHTRTHTGEKP 171 (311)
Q Consensus 141 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 171 (311)
..+-.|++|+..+....+|++|+...++.+|
T Consensus 22 ~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 22 EQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp S--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred CCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 3556777777777777777777766665543
No 49
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=96.04 E-value=0.0013 Score=60.44 Aligned_cols=141 Identities=30% Similarity=0.399 Sum_probs=87.6
Q ss_pred CccCCCCCCCCCChHHHHHHHH--HhcCC--CCccCC--CCCCccCCchhHHHHHHhcCCCCCCcCCC--CCCcCCChhH
Q psy7185 171 PHVCDVCSKGFSTSSSLNTHRR--IHSGE--RPHVCP--ICFKTFTASSNLYYHRITHVKDKPHKCGA--CGKSFPTPGN 242 (311)
Q Consensus 171 ~~~C~~C~~~f~~~~~l~~H~~--~h~~~--~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~ 242 (311)
++.|..|...|.....|..|.+ .|.++ +++.|+ .|++.|.....+..|...|.+..++.|.. |...+.....
T Consensus 289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (467)
T COG5048 289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLN 368 (467)
T ss_pred CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCccccccccC
Confidence 5677777777777777777777 67777 777777 67777777777777777777776666654 3332222221
Q ss_pred HHHHHHh--hcCCCCcccCCCCcCccCCCCCChHHHHHHHHHcCCCC--ceecccccccccChhhHHHHhhhC
Q psy7185 243 LRTHSYS--HSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHSGSW--PYKCTVCIKGFAKSSNLKNHMTIH 311 (311)
Q Consensus 243 l~~H~~~--h~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~--~~~C~~C~~~F~~~~~L~~H~r~H 311 (311)
-..+... ..+..........-..|...+.....+..|...|.... .+.+..|.+.|.....+..|++.|
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (467)
T COG5048 369 NEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIH 441 (467)
T ss_pred CCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCccccccccccc
Confidence 1001110 00111111011112356667777777777777776655 467888999999999998888765
No 50
>PRK04860 hypothetical protein; Provisional
Probab=96.02 E-value=0.0045 Score=48.43 Aligned_cols=36 Identities=19% Similarity=0.474 Sum_probs=18.7
Q ss_pred CccCCCCCCccCCchhHHHHHHhcCCCCCCcCCCCCCcCC
Q psy7185 199 PHVCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFP 238 (311)
Q Consensus 199 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 238 (311)
+|.|. |+. ....+.+|.++|.++++|.|..|+..|.
T Consensus 119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~ 154 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLV 154 (160)
T ss_pred EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeE
Confidence 35554 554 3344555555555555555555555543
No 51
>PRK04860 hypothetical protein; Provisional
Probab=95.93 E-value=0.0041 Score=48.67 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=27.3
Q ss_pred cCccCCCCCChHHHHHHHHHcCCCCceecccccccccChh
Q psy7185 263 VGACGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAKSS 302 (311)
Q Consensus 263 C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~F~~~~ 302 (311)
|. |+. ....+.+|.++|.++++|.|..|+..|....
T Consensus 122 C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~ 157 (160)
T PRK04860 122 CK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG 157 (160)
T ss_pred cC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence 65 766 5667788888888888888888888876543
No 52
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=95.78 E-value=0.0057 Score=31.61 Aligned_cols=22 Identities=36% Similarity=0.840 Sum_probs=14.5
Q ss_pred cccCcCccccCChhhHHHHHHh
Q psy7185 144 LPCTVCGKSFDRPSLLKRHTRT 165 (311)
Q Consensus 144 ~~C~~C~~~f~~~~~l~~H~~~ 165 (311)
|.|..|+..|.+...|+.|++.
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRS 22 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHCc
Confidence 4566677777777777666653
No 53
>KOG1146|consensus
Probab=95.77 E-value=0.0019 Score=64.63 Aligned_cols=103 Identities=25% Similarity=0.322 Sum_probs=58.3
Q ss_pred cccCcCccccCChhhHHHHHH-hhcCCCCccCCCCCCCCCChHHHHHHHHHhcCCCCccCCCCCCccCCchhHHHHHHhc
Q psy7185 144 LPCTVCGKSFDRPSLLKRHTR-THTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITH 222 (311)
Q Consensus 144 ~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h 222 (311)
-.|..|+..+.+...+.-|+. .+...+.|.|+.|+..|.....|..|++..+.+..- ..| +.+.....+.+-...-
T Consensus 437 ~e~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~--~~c-~~gq~~~~~arg~~~~ 513 (1406)
T KOG1146|consen 437 VELTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQS--AYC-KAGQNHPRLARGEVYR 513 (1406)
T ss_pred ccccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccch--hHh-Hhcccccccccccccc
Confidence 345556666666666655544 344557788888888888888888888874433211 112 1111111111001111
Q ss_pred CCCCCCcCCCCCCcCCChhHHHHHHHh
Q psy7185 223 VKDKPHKCGACGKSFPTPGNLRTHSYS 249 (311)
Q Consensus 223 ~~~~~~~C~~C~~~f~~~~~l~~H~~~ 249 (311)
.+.++|.|..|...+..+.+|..|+..
T Consensus 514 ~~~~p~~C~~C~~stttng~LsihlqS 540 (1406)
T KOG1146|consen 514 CPGKPYPCRACNYSTTTNGNLSIHLQS 540 (1406)
T ss_pred CCCCcccceeeeeeeecchHHHHHHHH
Confidence 234667777777777777777777653
No 54
>KOG2785|consensus
Probab=95.58 E-value=0.028 Score=49.23 Aligned_cols=47 Identities=19% Similarity=0.376 Sum_probs=37.4
Q ss_pred cCccCCCCCChHHHHHHHHHcCCC-----------------------Cceeccccc---ccccChhhHHHHhh
Q psy7185 263 VGACGKSFPTPGNLRTHSYSHSGS-----------------------WPYKCTVCI---KGFAKSSNLKNHMT 309 (311)
Q Consensus 263 C~~C~~~f~~~~~L~~H~~~h~~~-----------------------~~~~C~~C~---~~F~~~~~L~~H~r 309 (311)
|-.|++.+.+-..-..||..++|- .-|.|-.|+ +.|.+....+.||+
T Consensus 169 CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~ 241 (390)
T KOG2785|consen 169 CLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMR 241 (390)
T ss_pred eeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHh
Confidence 777777777777777777776652 248899999 99999999999986
No 55
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=95.50 E-value=0.0057 Score=32.39 Aligned_cols=22 Identities=36% Similarity=0.691 Sum_probs=14.6
Q ss_pred CcCCCCCCcCCChhHHHHHHHh
Q psy7185 228 HKCGACGKSFPTPGNLRTHSYS 249 (311)
Q Consensus 228 ~~C~~C~~~f~~~~~l~~H~~~ 249 (311)
|.|..|++.|.+...|..|+++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 5666777777777776666653
No 56
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=95.28 E-value=0.012 Score=30.49 Aligned_cols=19 Identities=26% Similarity=0.733 Sum_probs=12.0
Q ss_pred ecccccccccChhhHHHHhh
Q psy7185 290 KCTVCIKGFAKSSNLKNHMT 309 (311)
Q Consensus 290 ~C~~C~~~F~~~~~L~~H~r 309 (311)
+|+.||+.| ....|.+|++
T Consensus 4 ~C~~CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 4 PCPICGRKF-NPDRLEKHEK 22 (25)
T ss_pred cCCCCCCEE-CHHHHHHHHH
Confidence 566666666 5556666654
No 57
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.98 E-value=0.021 Score=49.14 Aligned_cols=122 Identities=25% Similarity=0.440 Sum_probs=77.7
Q ss_pred ccCCC--CCCCCCChHHHHHHHHHhcCCCCccCCCCC---CccC------CchhHHHHHHhcCCCCCC----cCCCCCCc
Q psy7185 172 HVCDV--CSKGFSTSSSLNTHRRIHSGERPHVCPICF---KTFT------ASSNLYYHRITHVKDKPH----KCGACGKS 236 (311)
Q Consensus 172 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~---~~f~------~~~~l~~H~~~h~~~~~~----~C~~C~~~ 236 (311)
|.|+. |..+......|..|.+..++. +.|.+|- +.|. +...|..|...-..+..| .|..|...
T Consensus 152 F~CP~skc~~~C~~~k~lk~H~K~~H~~--~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~~ 229 (493)
T COG5236 152 FKCPKSKCHRRCGSLKELKKHYKAQHGF--VLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKIY 229 (493)
T ss_pred hcCCchhhhhhhhhHHHHHHHHHhhcCc--EEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhccce
Confidence 55654 555555566666666665543 4555553 2222 234466665543333233 59999999
Q ss_pred CCChhHHHHHHHhhcCCCCcccCCCCcCccCCC-------CCChHHHHHHHHHcCCCCceeccc--cc----ccccChhh
Q psy7185 237 FPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKS-------FPTPGNLRTHSYSHSGSWPYKCTV--CI----KGFAKSSN 303 (311)
Q Consensus 237 f~~~~~l~~H~~~h~~~~~~~~~~~~C~~C~~~-------f~~~~~L~~H~~~h~~~~~~~C~~--C~----~~F~~~~~ 303 (311)
|-+...|..|++..|.. |-+|+++ |.+...|..|.+.-+ |.|.+ |- ..|.....
T Consensus 230 FYdDDEL~~HcR~~HE~---------ChICD~v~p~~~QYFK~Y~~Le~HF~~~h----y~ct~qtc~~~k~~vf~~~~e 296 (493)
T COG5236 230 FYDDDELRRHCRLRHEA---------CHICDMVGPIRYQYFKSYEDLEAHFRNAH----YCCTFQTCRVGKCYVFPYHTE 296 (493)
T ss_pred ecChHHHHHHHHhhhhh---------hhhhhccCccchhhhhCHHHHHHHhhcCc----eEEEEEEEecCcEEEeccHHH
Confidence 99999999999976642 6677665 667778888875432 66654 42 56777888
Q ss_pred HHHHh
Q psy7185 304 LKNHM 308 (311)
Q Consensus 304 L~~H~ 308 (311)
|..|+
T Consensus 297 l~~h~ 301 (493)
T COG5236 297 LLEHL 301 (493)
T ss_pred HHHHH
Confidence 88886
No 58
>KOG1146|consensus
Probab=94.74 E-value=0.0077 Score=60.55 Aligned_cols=81 Identities=21% Similarity=0.272 Sum_probs=51.3
Q ss_pred cCCCCCCcCCCCCCcCCChhHHHHHHHhhcCCCCcccCCCCcCccCCCCCChHHHHHHHHHcCCCCceecccccccccCh
Q psy7185 222 HVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAKS 301 (311)
Q Consensus 222 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~F~~~ 301 (311)
+.-.+.|+|+.|+..|+....|..|+|..+.+-... .|. .+.+...+.+-.-.-.+.++|.|..|.++++.+
T Consensus 460 ~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~-------~c~-~gq~~~~~arg~~~~~~~~p~~C~~C~~stttn 531 (1406)
T KOG1146|consen 460 HSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSA-------YCK-AGQNHPRLARGEVYRCPGKPYPCRACNYSTTTN 531 (1406)
T ss_pred ecccccccCCccchhhhhHHHhhhcccccccccchh-------HhH-hccccccccccccccCCCCcccceeeeeeeecc
Confidence 444578999999999999999999998644321110 111 011100000000011245789999999999999
Q ss_pred hhHHHHhhh
Q psy7185 302 SNLKNHMTI 310 (311)
Q Consensus 302 ~~L~~H~r~ 310 (311)
.+|.+|+..
T Consensus 532 g~LsihlqS 540 (1406)
T KOG1146|consen 532 GNLSIHLQS 540 (1406)
T ss_pred hHHHHHHHH
Confidence 999999864
No 59
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.66 E-value=0.08 Score=38.42 Aligned_cols=47 Identities=26% Similarity=0.443 Sum_probs=25.9
Q ss_pred cCccCCCCCChHHHHHHHHHcCCCCceecccccccccChhhHHHHhhhC
Q psy7185 263 VGACGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAKSSNLKNHMTIH 311 (311)
Q Consensus 263 C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~F~~~~~L~~H~r~H 311 (311)
|-.|...|........ ..-.....|+|+.|..-|-..-+.-.|...|
T Consensus 58 C~~C~~~f~~~~~~~~--~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh 104 (112)
T TIGR00622 58 CFGCQGPFPKPPVSPF--DELKDSHRYVCAVCKNVFCVDCDVFVHESLH 104 (112)
T ss_pred ccCcCCCCCCcccccc--cccccccceeCCCCCCccccccchhhhhhcc
Confidence 6677777765421110 0011234577777777777666666665544
No 60
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.65 E-value=0.092 Score=38.10 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=14.6
Q ss_pred CCcCCCCCCcCCChhHHHHHHHhhc
Q psy7185 227 PHKCGACGKSFPTPGNLRTHSYSHS 251 (311)
Q Consensus 227 ~~~C~~C~~~f~~~~~l~~H~~~h~ 251 (311)
.|+|+.|...|-..-+.-.|...|.
T Consensus 81 ~y~C~~C~~~FC~dCD~fiHe~Lh~ 105 (112)
T TIGR00622 81 RYVCAVCKNVFCVDCDVFVHESLHC 105 (112)
T ss_pred ceeCCCCCCccccccchhhhhhccC
Confidence 4666666666665555555555553
No 61
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=94.53 E-value=0.026 Score=31.78 Aligned_cols=23 Identities=17% Similarity=0.511 Sum_probs=17.8
Q ss_pred ceecccccccccChhhHHHHhhh
Q psy7185 288 PYKCTVCIKGFAKSSNLKNHMTI 310 (311)
Q Consensus 288 ~~~C~~C~~~F~~~~~L~~H~r~ 310 (311)
+|.|.+|++.|.+...+..|++.
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKG 25 (35)
T ss_pred CeEccccCCccCCHHHHHHHHCh
Confidence 57788888888888888888753
No 62
>KOG2785|consensus
Probab=94.30 E-value=0.12 Score=45.43 Aligned_cols=140 Identities=16% Similarity=0.260 Sum_probs=90.6
Q ss_pred ccccCcCccccCChhhHHHHHHhh-------------------------------------cCCCCccCCCCCCCCCChH
Q psy7185 143 MLPCTVCGKSFDRPSLLKRHTRTH-------------------------------------TGEKPHVCDVCSKGFSTSS 185 (311)
Q Consensus 143 ~~~C~~C~~~f~~~~~l~~H~~~h-------------------------------------~~~~~~~C~~C~~~f~~~~ 185 (311)
.|.|.-|...|.+...-+.|+++- ....++.|..|.+.|.+..
T Consensus 3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s~~ 82 (390)
T KOG2785|consen 3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFASPK 82 (390)
T ss_pred cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccChh
Confidence 489999999999987778887642 0124578999999999998
Q ss_pred HHHHHHHHhcCC-----------------CCcc-------------CCCCCCccCCchhHHHHHHh------------cC
Q psy7185 186 SLNTHRRIHSGE-----------------RPHV-------------CPICFKTFTASSNLYYHRIT------------HV 223 (311)
Q Consensus 186 ~l~~H~~~h~~~-----------------~~~~-------------C~~C~~~f~~~~~l~~H~~~------------h~ 223 (311)
....|+..-... ..+. +..+............+..- -.
T Consensus 83 a~~~hl~Sk~h~~~~~~~~r~~e~d~a~~~q~~~~~p~~l~~~~e~e~~~~E~~~~~d~~~e~~~dd~~Edi~~d~~~e~ 162 (390)
T KOG2785|consen 83 AHENHLKSKKHVENLSNHQRSEEGDSAKISQLPSRRPSNLQNKGESELKWYEVDSDEDSSEEEEEDDEEEDIEEDGDDED 162 (390)
T ss_pred hHHHHHHHhhcchhhhhhhccccccchhhhhccccCccccccCCCcccchhhcccccccchhhccCcchhhhhhccchhc
Confidence 888887542110 0112 22222222221111111110 01
Q ss_pred CCCCCcCCCCCCcCCChhHHHHHHHhhcCCCC----cc--------------cCCCCcCccC---CCCCChHHHHHHHHH
Q psy7185 224 KDKPHKCGACGKSFPTPGNLRTHSYSHSGSWP----YK--------------IHAPSVGACG---KSFPTPGNLRTHSYS 282 (311)
Q Consensus 224 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~----~~--------------~~~~~C~~C~---~~f~~~~~L~~H~~~ 282 (311)
...|-.|-.|++.+.+...-..||..+||-.- |- ...+.|-.|+ +.|.+..+.+.||..
T Consensus 163 e~~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~ 242 (390)
T KOG2785|consen 163 ELIPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD 242 (390)
T ss_pred ccCCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence 12357899999999999999999999887421 11 0124588888 999999999999875
No 63
>KOG2482|consensus
Probab=94.16 E-value=0.14 Score=44.30 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=14.7
Q ss_pred eecccccccccChhhHHHHhh
Q psy7185 289 YKCTVCIKGFAKSSNLKNHMT 309 (311)
Q Consensus 289 ~~C~~C~~~F~~~~~L~~H~r 309 (311)
-.|-.|+..|-....|..||.
T Consensus 335 ~~c~~cd~~F~~e~~l~~hm~ 355 (423)
T KOG2482|consen 335 SRCAECDLSFWKEPGLLIHMV 355 (423)
T ss_pred cccccccccccCcchhhhhcc
Confidence 446667777777777777764
No 64
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=93.31 E-value=0.097 Score=27.06 Aligned_cols=20 Identities=40% Similarity=1.243 Sum_probs=12.5
Q ss_pred cccCcCccccCChhhHHHHHH
Q psy7185 144 LPCTVCGKSFDRPSLLKRHTR 164 (311)
Q Consensus 144 ~~C~~C~~~f~~~~~l~~H~~ 164 (311)
.+|+.||..| ....|..|+.
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEK 22 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHH
Confidence 4567777777 4466666654
No 65
>KOG2482|consensus
Probab=93.23 E-value=0.13 Score=44.52 Aligned_cols=142 Identities=20% Similarity=0.191 Sum_probs=83.3
Q ss_pred CCCCccccCcCcccc-CChhhHHHHHHhhcCC----------------------CCccCCCCCCCCCChHHHHHHHHHhc
Q psy7185 139 PSKTMLPCTVCGKSF-DRPSLLKRHTRTHTGE----------------------KPHVCDVCSKGFSTSSSLNTHRRIHS 195 (311)
Q Consensus 139 ~~~~~~~C~~C~~~f-~~~~~l~~H~~~h~~~----------------------~~~~C~~C~~~f~~~~~l~~H~~~h~ 195 (311)
......+|-.|+..+ ..++....|+-.-++- ..+.|-.|.+.|..+..|+.||+...
T Consensus 140 dt~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMrkK~ 219 (423)
T KOG2482|consen 140 DTIFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMRKKR 219 (423)
T ss_pred CCeeeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHHhcc
Confidence 334557899998765 4556666776532220 23789999999999999999997532
Q ss_pred C--CCC--------ccCCCCCCccCCchhHHHHH----Hhc---------------CCCCC--CcCCCCCCcCCChhHHH
Q psy7185 196 G--ERP--------HVCPICFKTFTASSNLYYHR----ITH---------------VKDKP--HKCGACGKSFPTPGNLR 244 (311)
Q Consensus 196 ~--~~~--------~~C~~C~~~f~~~~~l~~H~----~~h---------------~~~~~--~~C~~C~~~f~~~~~l~ 244 (311)
. -.| |.=.. .-..++....|. .+- .+..+ ..|-.|.....+...|.
T Consensus 220 HrrinPknreYDkfyiINY---~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~~en~~~l~ 296 (423)
T KOG2482|consen 220 HRRINPKNREYDKFYIINY---LEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNFYENPVFLF 296 (423)
T ss_pred CcccCCCccccceEEEEeH---hhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccchhhHHHHH
Confidence 1 111 10000 000011111111 110 01112 58888998888888999
Q ss_pred HHHHhhcCCC-----------Ccc-----------cCCCCcCccCCCCCChHHHHHHHHHc
Q psy7185 245 THSYSHSGSW-----------PYK-----------IHAPSVGACGKSFPTPGNLRTHSYSH 283 (311)
Q Consensus 245 ~H~~~h~~~~-----------~~~-----------~~~~~C~~C~~~f~~~~~L~~H~~~h 283 (311)
.||+.-|.-. -|+ .....|..|.-.|.....|..||..+
T Consensus 297 eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e~ 357 (423)
T KOG2482|consen 297 EHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVED 357 (423)
T ss_pred HHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcccc
Confidence 9988655310 010 01124889999999999999998643
No 66
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=92.38 E-value=0.1 Score=29.00 Aligned_cols=11 Identities=36% Similarity=0.972 Sum_probs=5.9
Q ss_pred ccCCCCCCccC
Q psy7185 200 HVCPICFKTFT 210 (311)
Q Consensus 200 ~~C~~C~~~f~ 210 (311)
|.|..||..+.
T Consensus 2 ~~C~~CGy~y~ 12 (33)
T cd00350 2 YVCPVCGYIYD 12 (33)
T ss_pred EECCCCCCEEC
Confidence 45555555543
No 67
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=92.12 E-value=0.12 Score=28.99 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=15.0
Q ss_pred CCcCCCCCCcCCChhHHHHHHH
Q psy7185 227 PHKCGACGKSFPTPGNLRTHSY 248 (311)
Q Consensus 227 ~~~C~~C~~~f~~~~~l~~H~~ 248 (311)
+|.|..|++.|.+...+..|+.
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~ 24 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLK 24 (35)
T ss_pred CeEccccCCccCCHHHHHHHHC
Confidence 4667777777777777776665
No 68
>KOG2893|consensus
Probab=91.22 E-value=0.071 Score=43.59 Aligned_cols=41 Identities=27% Similarity=0.589 Sum_probs=16.8
Q ss_pred CCCCCCCCCChHHHHHHHHHhcCCCCccCCCCCCccCCchhHHHH
Q psy7185 174 CDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYH 218 (311)
Q Consensus 174 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H 218 (311)
|-.|++.|....-|.+|++.. .|+|-+|.+...+.-.|..|
T Consensus 13 cwycnrefddekiliqhqkak----hfkchichkkl~sgpglsih 53 (341)
T KOG2893|consen 13 CWYCNREFDDEKILIQHQKAK----HFKCHICHKKLFSGPGLSIH 53 (341)
T ss_pred eeecccccchhhhhhhhhhhc----cceeeeehhhhccCCCceee
Confidence 444444444444444443321 24444444443333333333
No 69
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=91.02 E-value=0.39 Score=35.09 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=11.8
Q ss_pred ccCCCCCCCCCChHHHHHHHHH
Q psy7185 172 HVCDVCSKGFSTSSSLNTHRRI 193 (311)
Q Consensus 172 ~~C~~C~~~f~~~~~l~~H~~~ 193 (311)
..|..|+..... ..+..|++.
T Consensus 12 lIC~~C~~av~~-~~v~~HL~~ 32 (109)
T PF12013_consen 12 LICRQCQYAVQP-SEVESHLRK 32 (109)
T ss_pred EEeCCCCcccCc-hHHHHHHHH
Confidence 456666655444 555666653
No 70
>KOG4173|consensus
Probab=90.42 E-value=0.1 Score=41.70 Aligned_cols=81 Identities=23% Similarity=0.419 Sum_probs=53.2
Q ss_pred CCccCCC--CCCccCCchhHHHHHHhcCCCCCCcCCCCCCcCCChhHHHHHHHhhcC----------CCCcccCCCCcCc
Q psy7185 198 RPHVCPI--CFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHSG----------SWPYKIHAPSVGA 265 (311)
Q Consensus 198 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~----------~~~~~~~~~~C~~ 265 (311)
..|.|+. |...|.+...+..|..+-++ -.|..|.+.|.+...|..|+...|. ...|+|- -..
T Consensus 78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~Cl---vEg 151 (253)
T KOG4173|consen 78 PAFACQVAGCCQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCL---VEG 151 (253)
T ss_pred ccccccccchHHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHH---HHh
Confidence 3477876 66778877777777765444 3688888888888888888765442 2334432 245
Q ss_pred cCCCCCChHHHHHHHHHcC
Q psy7185 266 CGKSFPTPGNLRTHSYSHS 284 (311)
Q Consensus 266 C~~~f~~~~~L~~H~~~h~ 284 (311)
|+..|.+...-..|+..-+
T Consensus 152 Ct~KFkT~r~RkdH~I~~H 170 (253)
T KOG4173|consen 152 CTEKFKTSRDRKDHMIRMH 170 (253)
T ss_pred hhhhhhhhhhhhhHHHHhc
Confidence 6666666666666665554
No 71
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=89.12 E-value=0.15 Score=31.48 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=21.9
Q ss_pred CCCCCCcCCCCCCcCCChhHHHHHHHhhcC
Q psy7185 223 VKDKPHKCGACGKSFPTPGNLRTHSYSHSG 252 (311)
Q Consensus 223 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~ 252 (311)
.|+.-++|+-|+..|....++.+|...-|+
T Consensus 13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~ 42 (65)
T COG4049 13 DGEEFLRCPRCGMVFRRRKDYIRHVNKAHG 42 (65)
T ss_pred CCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence 356667888888888888888888765443
No 72
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=88.53 E-value=0.37 Score=35.01 Aligned_cols=30 Identities=33% Similarity=0.824 Sum_probs=17.8
Q ss_pred ccCCCCCCccCCchhHHHHHHhcCCCCCCcCCCCCCcCCCh
Q psy7185 200 HVCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTP 240 (311)
Q Consensus 200 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 240 (311)
..|+.||..|... +..|..|++||..|.-.
T Consensus 10 R~Cp~CG~kFYDL-----------nk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 10 RTCPSCGAKFYDL-----------NKDPIVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCcchhccC-----------CCCCccCCCCCCccCcc
Confidence 4566666666552 33566666666666544
No 73
>KOG2893|consensus
Probab=88.28 E-value=0.12 Score=42.34 Aligned_cols=47 Identities=26% Similarity=0.512 Sum_probs=36.2
Q ss_pred CCCccCCCCCCccCCchhHHHHHHhcCCCCCCcCCCCCCcCCChhHHHHHHH
Q psy7185 197 ERPHVCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSY 248 (311)
Q Consensus 197 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~ 248 (311)
.++| |..|++.|....-|.+|++.. -|+|.+|-+..-+--.|..|-.
T Consensus 9 ~kpw-cwycnrefddekiliqhqkak----hfkchichkkl~sgpglsihcm 55 (341)
T KOG2893|consen 9 DKPW-CWYCNREFDDEKILIQHQKAK----HFKCHICHKKLFSGPGLSIHCM 55 (341)
T ss_pred CCce-eeecccccchhhhhhhhhhhc----cceeeeehhhhccCCCceeehh
Confidence 3444 889999999999999998753 4999999887766666666644
No 74
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=87.18 E-value=0.29 Score=30.26 Aligned_cols=27 Identities=19% Similarity=0.395 Sum_probs=22.5
Q ss_pred cCCCCceecccccccccChhhHHHHhh
Q psy7185 283 HSGSWPYKCTVCIKGFAKSSNLKNHMT 309 (311)
Q Consensus 283 h~~~~~~~C~~C~~~F~~~~~L~~H~r 309 (311)
-.||.-+.|+.||.-|.....+.+|+.
T Consensus 12 RDGE~~lrCPRC~~~FR~~K~Y~RHVN 38 (65)
T COG4049 12 RDGEEFLRCPRCGMVFRRRKDYIRHVN 38 (65)
T ss_pred cCCceeeeCCchhHHHHHhHHHHHHhh
Confidence 356777899999999999999998864
No 75
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=86.93 E-value=1.1 Score=32.56 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=19.7
Q ss_pred CccccCcCccccCChhhHHHHHHhhc
Q psy7185 142 TMLPCTVCGKSFDRPSLLKRHTRTHT 167 (311)
Q Consensus 142 ~~~~C~~C~~~f~~~~~l~~H~~~h~ 167 (311)
....|..|+..... ..+..|++..+
T Consensus 10 ~vlIC~~C~~av~~-~~v~~HL~~~H 34 (109)
T PF12013_consen 10 RVLICRQCQYAVQP-SEVESHLRKRH 34 (109)
T ss_pred CEEEeCCCCcccCc-hHHHHHHHHhc
Confidence 45789999988766 88999998543
No 76
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=86.65 E-value=0.39 Score=34.90 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=17.8
Q ss_pred cCccCCCCCChHHHHHHHHHcCCCCceecccccccccCh
Q psy7185 263 VGACGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAKS 301 (311)
Q Consensus 263 C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~F~~~ 301 (311)
|+.||..|... +..|-.|+.||..|.-.
T Consensus 12 Cp~CG~kFYDL-----------nk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 12 CPSCGAKFYDL-----------NKDPIVCPKCGTEFPPE 39 (108)
T ss_pred CCCCcchhccC-----------CCCCccCCCCCCccCcc
Confidence 77777777653 33566777777766543
No 77
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=86.56 E-value=0.14 Score=42.38 Aligned_cols=48 Identities=23% Similarity=0.248 Sum_probs=25.3
Q ss_pred CCCcCCCCCCcCCChhHHHHHHHhh----------cCCCCcccCCCCcCccCCCCCCh
Q psy7185 226 KPHKCGACGKSFPTPGNLRTHSYSH----------SGSWPYKIHAPSVGACGKSFPTP 273 (311)
Q Consensus 226 ~~~~C~~C~~~f~~~~~l~~H~~~h----------~~~~~~~~~~~~C~~C~~~f~~~ 273 (311)
+.+.||.|+..|..+.-.....+.- .+..|+.-....|+.||.+|...
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence 4456666666666654444433321 12334333344688888776643
No 78
>KOG2186|consensus
Probab=85.53 E-value=0.51 Score=39.16 Aligned_cols=49 Identities=20% Similarity=0.347 Sum_probs=26.1
Q ss_pred ccCCCCCCCCCChHHHHHHHHHhcCCCCccCCCCCCccCCchhHHHHHHhcC
Q psy7185 172 HVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHV 223 (311)
Q Consensus 172 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~ 223 (311)
|.|..||....- -.+.+|+..-++ .-|.|-.|+..|.. .++..|...-+
T Consensus 4 FtCnvCgEsvKK-p~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~kCIT 52 (276)
T KOG2186|consen 4 FTCNVCGESVKK-PQVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTKCIT 52 (276)
T ss_pred Eehhhhhhhccc-cchHHHHHhccC-CeeEEeeccccccc-chhhhhhhhcc
Confidence 556666655432 234456655555 34666666666655 44555554433
No 79
>KOG2186|consensus
Probab=85.48 E-value=0.5 Score=39.22 Aligned_cols=48 Identities=25% Similarity=0.580 Sum_probs=39.4
Q ss_pred ccccCcCccccCChhhHHHHHHhhcCCCCccCCCCCCCCCChHHHHHHHHH
Q psy7185 143 MLPCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRI 193 (311)
Q Consensus 143 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~ 193 (311)
.|.|..||..... ..+.+|+...++ .-|.|-.|+..|.. .++..|..-
T Consensus 3 ~FtCnvCgEsvKK-p~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~kC 50 (276)
T KOG2186|consen 3 FFTCNVCGESVKK-PQVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTKC 50 (276)
T ss_pred EEehhhhhhhccc-cchHHHHHhccC-CeeEEeeccccccc-chhhhhhhh
Confidence 4899999998876 556779988777 67999999999988 778888653
No 80
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=84.83 E-value=0.74 Score=25.73 Aligned_cols=10 Identities=40% Similarity=0.942 Sum_probs=5.4
Q ss_pred ccCCCCCCcc
Q psy7185 200 HVCPICFKTF 209 (311)
Q Consensus 200 ~~C~~C~~~f 209 (311)
|.|..||..+
T Consensus 3 ~~C~~CG~i~ 12 (34)
T cd00729 3 WVCPVCGYIH 12 (34)
T ss_pred EECCCCCCEe
Confidence 4555555544
No 81
>KOG4173|consensus
Probab=84.06 E-value=0.37 Score=38.64 Aligned_cols=79 Identities=20% Similarity=0.451 Sum_probs=63.6
Q ss_pred CCccCCC--CCCCCCChHHHHHHHHHhcCCCCccCCCCCCccCCchhHHHHHHhc----------CCCCCCcC--CCCCC
Q psy7185 170 KPHVCDV--CSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITH----------VKDKPHKC--GACGK 235 (311)
Q Consensus 170 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h----------~~~~~~~C--~~C~~ 235 (311)
..|.|++ |...|.....+..|..+-++. .|..|.+.|.+...|..|+..- .|.--|.| ..|+.
T Consensus 78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~~---sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~ 154 (253)
T KOG4173|consen 78 PAFACQVAGCCQVFDALDDYEHHYHTLHGN---SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTE 154 (253)
T ss_pred ccccccccchHHHHhhhhhHHHhhhhcccc---hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhh
Confidence 4578887 778899988888888777664 7999999999999999997532 34455889 45999
Q ss_pred cCCChhHHHHHHHhhc
Q psy7185 236 SFPTPGNLRTHSYSHS 251 (311)
Q Consensus 236 ~f~~~~~l~~H~~~h~ 251 (311)
.|.+...-..|+..-|
T Consensus 155 KFkT~r~RkdH~I~~H 170 (253)
T KOG4173|consen 155 KFKTSRDRKDHMIRMH 170 (253)
T ss_pred hhhhhhhhhhHHHHhc
Confidence 9999999999987444
No 82
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=82.16 E-value=1.3 Score=26.35 Aligned_cols=24 Identities=42% Similarity=0.522 Sum_probs=14.1
Q ss_pred CCCceecccccccccCh----hhHHHHh
Q psy7185 285 GSWPYKCTVCIKGFAKS----SNLKNHM 308 (311)
Q Consensus 285 ~~~~~~C~~C~~~F~~~----~~L~~H~ 308 (311)
+.....|.+|++.+... +.|.+|+
T Consensus 13 ~~~~a~C~~C~~~~~~~~~~ts~l~~HL 40 (45)
T PF02892_consen 13 DKKKAKCKYCGKVIKYSSGGTSNLKRHL 40 (45)
T ss_dssp CSS-EEETTTTEE-----SSTHHHHHHH
T ss_pred CcCeEEeCCCCeEEeeCCCcHHHHHHhh
Confidence 34556788888877764 6788887
No 83
>PHA00626 hypothetical protein
Probab=81.13 E-value=0.7 Score=28.72 Aligned_cols=14 Identities=29% Similarity=0.321 Sum_probs=10.7
Q ss_pred CceecccccccccC
Q psy7185 287 WPYKCTVCIKGFAK 300 (311)
Q Consensus 287 ~~~~C~~C~~~F~~ 300 (311)
..|.|+.||+.|+.
T Consensus 22 nrYkCkdCGY~ft~ 35 (59)
T PHA00626 22 DDYVCCDCGYNDSK 35 (59)
T ss_pred cceEcCCCCCeech
Confidence 46888888888864
No 84
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=81.12 E-value=1.5 Score=22.87 Aligned_cols=8 Identities=38% Similarity=0.879 Sum_probs=3.7
Q ss_pred cCccCCCC
Q psy7185 263 VGACGKSF 270 (311)
Q Consensus 263 C~~C~~~f 270 (311)
|+.||..|
T Consensus 17 Cp~CG~~F 24 (26)
T PF10571_consen 17 CPHCGYDF 24 (26)
T ss_pred CCCCCCCC
Confidence 44444444
No 85
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=80.52 E-value=1.5 Score=32.53 Aligned_cols=30 Identities=23% Similarity=0.484 Sum_probs=17.4
Q ss_pred ccCCCCCCccCCchhHHHHHHhcCCCCCCcCCCCCCcCCCh
Q psy7185 200 HVCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTP 240 (311)
Q Consensus 200 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 240 (311)
..|+.||+.|... +..|..|++||..|.-.
T Consensus 10 r~Cp~cg~kFYDL-----------nk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 10 RICPNTGSKFYDL-----------NRRPAVSPYTGEQFPPE 39 (129)
T ss_pred ccCCCcCcccccc-----------CCCCccCCCcCCccCcc
Confidence 4566666666442 34566666666665444
No 86
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=79.47 E-value=1.3 Score=34.74 Aligned_cols=24 Identities=38% Similarity=0.861 Sum_probs=16.4
Q ss_pred CccCCCCCCccCCchhHHHHHHhcCCCCCCcCCCCCC
Q psy7185 199 PHVCPICFKTFTASSNLYYHRITHVKDKPHKCGACGK 235 (311)
Q Consensus 199 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 235 (311)
.|.|++||+.+ -++.|-+||+||-
T Consensus 134 ~~vC~vCGy~~-------------~ge~P~~CPiCga 157 (166)
T COG1592 134 VWVCPVCGYTH-------------EGEAPEVCPICGA 157 (166)
T ss_pred EEEcCCCCCcc-------------cCCCCCcCCCCCC
Confidence 57788887653 3466777888873
No 87
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=79.37 E-value=0.44 Score=37.04 Aligned_cols=15 Identities=33% Similarity=0.636 Sum_probs=10.6
Q ss_pred ccCCCCCCCCCChHH
Q psy7185 172 HVCDVCSKGFSTSSS 186 (311)
Q Consensus 172 ~~C~~C~~~f~~~~~ 186 (311)
++|+.||++|.+...
T Consensus 29 ~~c~~c~~~f~~~e~ 43 (154)
T PRK00464 29 RECLACGKRFTTFER 43 (154)
T ss_pred eeccccCCcceEeEe
Confidence 778888888765543
No 88
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=78.89 E-value=1.4 Score=27.01 Aligned_cols=20 Identities=45% Similarity=0.873 Sum_probs=12.2
Q ss_pred ecccccccccCh-----hhHHHHhh
Q psy7185 290 KCTVCIKGFAKS-----SNLKNHMT 309 (311)
Q Consensus 290 ~C~~C~~~F~~~-----~~L~~H~r 309 (311)
.|..|++.++.. ++|.+|++
T Consensus 20 ~C~~C~~~l~~~~~~gTs~L~rHl~ 44 (50)
T smart00614 20 KCKYCGKKLSRSSKGGTSNLRRHLR 44 (50)
T ss_pred EecCCCCEeeeCCCCCcHHHHHHHH
Confidence 466666666544 46666665
No 89
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=78.19 E-value=0.52 Score=39.01 Aligned_cols=13 Identities=23% Similarity=0.437 Sum_probs=10.0
Q ss_pred CcCCCCCCcCCCh
Q psy7185 228 HKCGACGKSFPTP 240 (311)
Q Consensus 228 ~~C~~C~~~f~~~ 240 (311)
..||.||.+|...
T Consensus 49 ~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 49 WVCPHCGYAAFEE 61 (214)
T ss_pred EECCCCCCccccc
Confidence 5799999887654
No 90
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=78.01 E-value=1.3 Score=32.77 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=14.9
Q ss_pred cCccCCCCCChHHHHHHHHHcCCCCceecccccccccC
Q psy7185 263 VGACGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAK 300 (311)
Q Consensus 263 C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~F~~ 300 (311)
|+.||+.|... +..|-.|+.||..|.-
T Consensus 12 Cp~cg~kFYDL-----------nk~p~vcP~cg~~~~~ 38 (129)
T TIGR02300 12 CPNTGSKFYDL-----------NRRPAVSPYTGEQFPP 38 (129)
T ss_pred CCCcCcccccc-----------CCCCccCCCcCCccCc
Confidence 66666666542 3345566666665543
No 91
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=77.97 E-value=1.6 Score=24.83 Aligned_cols=11 Identities=36% Similarity=1.038 Sum_probs=5.4
Q ss_pred CCcCCCCCCcC
Q psy7185 227 PHKCGACGKSF 237 (311)
Q Consensus 227 ~~~C~~C~~~f 237 (311)
..+|+.|+..|
T Consensus 25 ~vrC~~C~~~f 35 (37)
T PF13719_consen 25 KVRCPKCGHVF 35 (37)
T ss_pred EEECCCCCcEe
Confidence 44555555444
No 92
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=77.94 E-value=0.92 Score=37.84 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=17.0
Q ss_pred CCCceecccccccccChhhHHHHhhhC
Q psy7185 285 GSWPYKCTVCIKGFAKSSNLKNHMTIH 311 (311)
Q Consensus 285 ~~~~~~C~~C~~~F~~~~~L~~H~r~H 311 (311)
..+++.|+.|+........|..-.|+|
T Consensus 206 k~k~~PCPKCg~et~eTkdLSmStR~h 232 (314)
T PF06524_consen 206 KGKPIPCPKCGYETQETKDLSMSTRSH 232 (314)
T ss_pred cCCCCCCCCCCCcccccccceeeeecc
Confidence 346778888887776666665444443
No 93
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=77.71 E-value=1.7 Score=25.96 Aligned_cols=10 Identities=20% Similarity=0.464 Sum_probs=4.4
Q ss_pred ccCCCCCCcc
Q psy7185 200 HVCPICFKTF 209 (311)
Q Consensus 200 ~~C~~C~~~f 209 (311)
|.|..||..|
T Consensus 3 Y~C~~Cg~~~ 12 (44)
T smart00659 3 YICGECGREN 12 (44)
T ss_pred EECCCCCCEe
Confidence 3444444443
No 94
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=77.57 E-value=1.9 Score=24.45 Aligned_cols=13 Identities=23% Similarity=0.772 Sum_probs=6.2
Q ss_pred cCCCCCCccCCch
Q psy7185 201 VCPICFKTFTASS 213 (311)
Q Consensus 201 ~C~~C~~~f~~~~ 213 (311)
.|+.|+..|.-..
T Consensus 4 ~Cp~C~~~y~i~d 16 (36)
T PF13717_consen 4 TCPNCQAKYEIDD 16 (36)
T ss_pred ECCCCCCEEeCCH
Confidence 4555555544433
No 95
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=76.35 E-value=2.7 Score=32.95 Aligned_cols=33 Identities=15% Similarity=0.377 Sum_probs=20.3
Q ss_pred CCCCccCCCCCCCCCChHHHHHHHHHhcCCCCccCCCCCCcc
Q psy7185 168 GEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTF 209 (311)
Q Consensus 168 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 209 (311)
...-|.|+.|+..|....++. .-|.|+.||...
T Consensus 106 ~~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~L 138 (158)
T TIGR00373 106 NNMFFICPNMCVRFTFNEAME---------LNFTCPRCGAML 138 (158)
T ss_pred CCCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCEe
Confidence 344567777777776666553 137777776543
No 96
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=76.01 E-value=1.9 Score=22.41 Aligned_cols=19 Identities=21% Similarity=0.733 Sum_probs=12.9
Q ss_pred ecccccccccChhhHHHHhh
Q psy7185 290 KCTVCIKGFAKSSNLKNHMT 309 (311)
Q Consensus 290 ~C~~C~~~F~~~~~L~~H~r 309 (311)
.|++|++.+ ....+..|+.
T Consensus 3 ~CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 3 QCPVCFREV-PENLINSHLD 21 (26)
T ss_pred cCCCCcCcc-cHHHHHHHHH
Confidence 577777777 5566677764
No 97
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=75.66 E-value=1.7 Score=27.41 Aligned_cols=9 Identities=44% Similarity=1.350 Sum_probs=4.3
Q ss_pred CCCcCCCCC
Q psy7185 226 KPHKCGACG 234 (311)
Q Consensus 226 ~~~~C~~C~ 234 (311)
.+|+|+.||
T Consensus 49 ~~Y~Cp~CG 57 (61)
T COG2888 49 NPYRCPKCG 57 (61)
T ss_pred CceECCCcC
Confidence 345555554
No 98
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=75.30 E-value=3 Score=32.70 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=8.9
Q ss_pred CCccCCCCCCccCCchhH
Q psy7185 198 RPHVCPICFKTFTASSNL 215 (311)
Q Consensus 198 ~~~~C~~C~~~f~~~~~l 215 (311)
.-|.|+.|+..|+....+
T Consensus 108 ~~Y~Cp~c~~r~tf~eA~ 125 (158)
T TIGR00373 108 MFFICPNMCVRFTFNEAM 125 (158)
T ss_pred CeEECCCCCcEeeHHHHH
Confidence 345555555555444443
No 99
>KOG2807|consensus
Probab=75.19 E-value=4.8 Score=34.94 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=13.0
Q ss_pred CCcCCCCCCcCCChhHHHHHHHhh
Q psy7185 227 PHKCGACGKSFPTPGNLRTHSYSH 250 (311)
Q Consensus 227 ~~~C~~C~~~f~~~~~l~~H~~~h 250 (311)
.|.|..|...|-..-+...|...|
T Consensus 345 ~y~C~~Ck~~FCldCDv~iHesLh 368 (378)
T KOG2807|consen 345 RYRCESCKNVFCLDCDVFIHESLH 368 (378)
T ss_pred cEEchhccceeeccchHHHHhhhh
Confidence 355555555555555555555544
No 100
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=75.18 E-value=1.7 Score=26.08 Aligned_cols=11 Identities=18% Similarity=0.437 Sum_probs=5.4
Q ss_pred ccCCCCCCccC
Q psy7185 200 HVCPICFKTFT 210 (311)
Q Consensus 200 ~~C~~C~~~f~ 210 (311)
|.|+.||..|.
T Consensus 4 y~C~~CG~~~~ 14 (46)
T PRK00398 4 YKCARCGREVE 14 (46)
T ss_pred EECCCCCCEEE
Confidence 45555555443
No 101
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=74.78 E-value=1.5 Score=25.03 Aligned_cols=11 Identities=36% Similarity=0.954 Sum_probs=4.9
Q ss_pred cCCCCCCccCC
Q psy7185 201 VCPICFKTFTA 211 (311)
Q Consensus 201 ~C~~C~~~f~~ 211 (311)
.|+.|+..|.-
T Consensus 4 ~CP~C~~~~~v 14 (38)
T TIGR02098 4 QCPNCKTSFRV 14 (38)
T ss_pred ECCCCCCEEEe
Confidence 34444444433
No 102
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=72.10 E-value=6.1 Score=30.51 Aligned_cols=37 Identities=14% Similarity=0.364 Sum_probs=19.7
Q ss_pred CCCccCCCCCCCCCChHHHHHHHHHhcCCCCccCCCCCCcc
Q psy7185 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTF 209 (311)
Q Consensus 169 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 209 (311)
...|.|+.|+..|.....+.. .. ....|.|+.||...
T Consensus 97 ~~~Y~Cp~C~~~y~~~ea~~~---~d-~~~~f~Cp~Cg~~l 133 (147)
T smart00531 97 NAYYKCPNCQSKYTFLEANQL---LD-MDGTFTCPRCGEEL 133 (147)
T ss_pred CcEEECcCCCCEeeHHHHHHh---cC-CCCcEECCCCCCEE
Confidence 345777777777664433221 01 12337777777654
No 103
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=71.97 E-value=1.4 Score=27.24 Aligned_cols=11 Identities=27% Similarity=0.612 Sum_probs=4.6
Q ss_pred ccCCCCCCccC
Q psy7185 200 HVCPICFKTFT 210 (311)
Q Consensus 200 ~~C~~C~~~f~ 210 (311)
|.|..|+..|.
T Consensus 6 y~C~~Cg~~fe 16 (52)
T TIGR02605 6 YRCTACGHRFE 16 (52)
T ss_pred EEeCCCCCEeE
Confidence 34444444443
No 104
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=71.72 E-value=3.3 Score=33.17 Aligned_cols=31 Identities=19% Similarity=0.474 Sum_probs=17.4
Q ss_pred CCccCCCCCCCCCChHHHHHHHHHhcCCCCccCCCCCCcc
Q psy7185 170 KPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTF 209 (311)
Q Consensus 170 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 209 (311)
.-|.|+.|+..|.....+. ..|.|+.||...
T Consensus 116 ~~Y~Cp~C~~rytf~eA~~---------~~F~Cp~Cg~~L 146 (178)
T PRK06266 116 MFFFCPNCHIRFTFDEAME---------YGFRCPQCGEML 146 (178)
T ss_pred CEEECCCCCcEEeHHHHhh---------cCCcCCCCCCCC
Confidence 4466666666665555442 236666666543
No 105
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=71.32 E-value=1.4 Score=25.48 Aligned_cols=10 Identities=40% Similarity=0.647 Sum_probs=4.1
Q ss_pred ccCCCCCCcc
Q psy7185 200 HVCPICFKTF 209 (311)
Q Consensus 200 ~~C~~C~~~f 209 (311)
|.|..||..|
T Consensus 6 y~C~~Cg~~f 15 (41)
T smart00834 6 YRCEDCGHTF 15 (41)
T ss_pred EEcCCCCCEE
Confidence 3444444433
No 106
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=71.30 E-value=2.3 Score=35.59 Aligned_cols=27 Identities=30% Similarity=0.538 Sum_probs=19.9
Q ss_pred CCCCcCCCCCCcCCChhHHHHHHHhhc
Q psy7185 225 DKPHKCGACGKSFPTPGNLRTHSYSHS 251 (311)
Q Consensus 225 ~~~~~C~~C~~~f~~~~~l~~H~~~h~ 251 (311)
.+++.||.||........|..-.++|.
T Consensus 207 ~k~~PCPKCg~et~eTkdLSmStR~hk 233 (314)
T PF06524_consen 207 GKPIPCPKCGYETQETKDLSMSTRSHK 233 (314)
T ss_pred CCCCCCCCCCCcccccccceeeeecch
Confidence 478889999888777777766655554
No 107
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=70.06 E-value=4.1 Score=32.63 Aligned_cols=16 Identities=31% Similarity=0.609 Sum_probs=7.7
Q ss_pred CccCCCCCCccCCchh
Q psy7185 199 PHVCPICFKTFTASSN 214 (311)
Q Consensus 199 ~~~C~~C~~~f~~~~~ 214 (311)
-|.|+.|+..|.....
T Consensus 117 ~Y~Cp~C~~rytf~eA 132 (178)
T PRK06266 117 FFFCPNCHIRFTFDEA 132 (178)
T ss_pred EEECCCCCcEEeHHHH
Confidence 3555555555444433
No 108
>PRK04023 DNA polymerase II large subunit; Validated
Probab=70.04 E-value=6 Score=39.84 Aligned_cols=10 Identities=30% Similarity=0.969 Sum_probs=6.2
Q ss_pred CcCCCCCCcC
Q psy7185 228 HKCGACGKSF 237 (311)
Q Consensus 228 ~~C~~C~~~f 237 (311)
+.|+.||..-
T Consensus 664 y~CPKCG~El 673 (1121)
T PRK04023 664 DECEKCGREP 673 (1121)
T ss_pred CcCCCCCCCC
Confidence 5577776543
No 109
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=70.03 E-value=3.3 Score=35.57 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=14.3
Q ss_pred CCcCCCCCCcCCChhHHHHHHHhh
Q psy7185 227 PHKCGACGKSFPTPGNLRTHSYSH 250 (311)
Q Consensus 227 ~~~C~~C~~~f~~~~~l~~H~~~h 250 (311)
.|.|+.|...|-..-+...|...|
T Consensus 388 rY~Ce~CK~~FC~dCdvfiHe~Lh 411 (421)
T COG5151 388 RYQCELCKSTFCSDCDVFIHETLH 411 (421)
T ss_pred ceechhhhhhhhhhhHHHHHHHHh
Confidence 466666666666655555555554
No 110
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=69.76 E-value=3.4 Score=32.50 Aligned_cols=24 Identities=50% Similarity=1.024 Sum_probs=16.6
Q ss_pred CccCCCCCCCCCChHHHHHHHHHhcCCCCccCCCCCC
Q psy7185 171 PHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFK 207 (311)
Q Consensus 171 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 207 (311)
.|.|+.||..+ .++.|-.||+||-
T Consensus 134 ~~vC~vCGy~~-------------~ge~P~~CPiCga 157 (166)
T COG1592 134 VWVCPVCGYTH-------------EGEAPEVCPICGA 157 (166)
T ss_pred EEEcCCCCCcc-------------cCCCCCcCCCCCC
Confidence 57788887664 3466777888873
No 111
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=69.22 E-value=4.7 Score=31.17 Aligned_cols=14 Identities=14% Similarity=0.520 Sum_probs=6.9
Q ss_pred CccccCcCccccCC
Q psy7185 142 TMLPCTVCGKSFDR 155 (311)
Q Consensus 142 ~~~~C~~C~~~f~~ 155 (311)
..|.|+.|+..|..
T Consensus 98 ~~Y~Cp~C~~~y~~ 111 (147)
T smart00531 98 AYYKCPNCQSKYTF 111 (147)
T ss_pred cEEECcCCCCEeeH
Confidence 34555555555543
No 112
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=68.17 E-value=1.6 Score=29.14 Aligned_cols=39 Identities=26% Similarity=0.450 Sum_probs=17.8
Q ss_pred cccCcCccccCChhhHHHHHHhhcCCCCccCC--CCCCCCCCh
Q psy7185 144 LPCTVCGKSFDRPSLLKRHTRTHTGEKPHVCD--VCSKGFSTS 184 (311)
Q Consensus 144 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~ 184 (311)
+.|+.||.......+-.... -..+.-+.|. .||.+|...
T Consensus 2 m~CP~Cg~~a~irtSr~~s~--~~~~~Y~qC~N~eCg~tF~t~ 42 (72)
T PRK09678 2 FHCPLCQHAAHARTSRYITD--TTKERYHQCQNVNCSATFITY 42 (72)
T ss_pred ccCCCCCCccEEEEChhcCh--hhheeeeecCCCCCCCEEEEE
Confidence 55666665542222211111 1234445665 566666543
No 113
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=67.54 E-value=2.1 Score=25.20 Aligned_cols=10 Identities=30% Similarity=0.597 Sum_probs=4.2
Q ss_pred ccCCCCCCcc
Q psy7185 200 HVCPICFKTF 209 (311)
Q Consensus 200 ~~C~~C~~~f 209 (311)
|.|..||..|
T Consensus 6 y~C~~Cg~~f 15 (42)
T PF09723_consen 6 YRCEECGHEF 15 (42)
T ss_pred EEeCCCCCEE
Confidence 3444444443
No 114
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=66.52 E-value=5.5 Score=21.88 Aligned_cols=9 Identities=44% Similarity=1.357 Sum_probs=3.9
Q ss_pred CCcCCCCCC
Q psy7185 227 PHKCGACGK 235 (311)
Q Consensus 227 ~~~C~~C~~ 235 (311)
+.+|+.||.
T Consensus 17 ~irC~~CG~ 25 (32)
T PF03604_consen 17 PIRCPECGH 25 (32)
T ss_dssp TSSBSSSS-
T ss_pred cEECCcCCC
Confidence 345555543
No 115
>KOG1280|consensus
Probab=66.18 E-value=6.6 Score=34.41 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=30.0
Q ss_pred CCCCcCCCCCCcCCChhHHHHHHHhhcCCCCcccCCCCcCccC
Q psy7185 225 DKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIHAPSVGACG 267 (311)
Q Consensus 225 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~C~~C~ 267 (311)
...|.|++|++.--+...|..|....|.+-++.+. |+.|+
T Consensus 77 ~qSftCPyC~~~Gfte~~f~~Hv~s~Hpda~~~~i---cp~c~ 116 (381)
T KOG1280|consen 77 PQSFTCPYCGIMGFTERQFGTHVLSQHPEASTSVI---CPLCA 116 (381)
T ss_pred cccccCCcccccccchhHHHHHhhhcCcccCccee---eeccc
Confidence 34689999998888888899998877776665544 66664
No 116
>KOG1701|consensus
Probab=65.64 E-value=1.3 Score=39.79 Aligned_cols=145 Identities=14% Similarity=0.199 Sum_probs=69.2
Q ss_pred cccCcCccccCChhhHHHHHHhhcCCCCccCCCCCCCCCChHHHHHHHHHhcCCCCc----------cCCCCCCccCCch
Q psy7185 144 LPCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPH----------VCPICFKTFTASS 213 (311)
Q Consensus 144 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~----------~C~~C~~~f~~~~ 213 (311)
-.|..|++...-...--.=|..--...-|.|..|++......-+.. ..++| +|..|+..
T Consensus 275 ~iC~~C~K~V~g~~~ac~Am~~~fHv~CFtC~~C~r~L~Gq~FY~v------~~k~~CE~cyq~tlekC~~Cg~~----- 343 (468)
T KOG1701|consen 275 GICAFCHKTVSGQGLAVEAMDQLFHVQCFTCRTCRRQLAGQSFYQV------DGKPYCEGCYQDTLEKCNKCGEP----- 343 (468)
T ss_pred hhhhhcCCcccCcchHHHHhhhhhcccceehHhhhhhhcccccccc------CCcccchHHHHHHHHHHhhhhhH-----
Confidence 3799999887655443333332222345889989776544332221 12332 56666654
Q ss_pred hHHHHHHhcCCC----CCCcCCCCCCcCCChhHHHHH-HHhhcCCCCcccCCCCcCccCCCCCChHHHHHHHHHcC----
Q psy7185 214 NLYYHRITHVKD----KPHKCGACGKSFPTPGNLRTH-SYSHSGSWPYKIHAPSVGACGKSFPTPGNLRTHSYSHS---- 284 (311)
Q Consensus 214 ~l~~H~~~h~~~----~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~---- 284 (311)
+..++..-.|. .-|.|-.|.+.......-..- -++|--..-++.-++.|..|+.-..-...-..-.++-.
T Consensus 344 -I~d~iLrA~GkayHp~CF~Cv~C~r~ldgipFtvd~~n~v~Cv~dfh~kfAPrCs~C~~PI~P~~G~~etvRvvamdr~ 422 (468)
T KOG1701|consen 344 -IMDRILRALGKAYHPGCFTCVVCARCLDGIPFTVDSQNNVYCVPDFHKKFAPRCSVCGNPILPRDGKDETVRVVAMDRD 422 (468)
T ss_pred -HHHHHHHhcccccCCCceEEEEeccccCCccccccCCCceeeehhhhhhcCcchhhccCCccCCCCCcceEEEEEcccc
Confidence 44454444342 237787776643322110000 00111111111223458888776544322221111111
Q ss_pred -CCCceecccccccccC
Q psy7185 285 -GSWPYKCTVCIKGFAK 300 (311)
Q Consensus 285 -~~~~~~C~~C~~~F~~ 300 (311)
...-|+|+.|+.-.+.
T Consensus 423 fHv~CY~CEDCg~~LS~ 439 (468)
T KOG1701|consen 423 FHVNCYKCEDCGLLLSS 439 (468)
T ss_pred ccccceehhhcCccccc
Confidence 1234899999987763
No 117
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=64.04 E-value=6.1 Score=25.07 Aligned_cols=10 Identities=30% Similarity=0.866 Sum_probs=5.5
Q ss_pred ccccCcCccc
Q psy7185 143 MLPCTVCGKS 152 (311)
Q Consensus 143 ~~~C~~C~~~ 152 (311)
.|.|+.||..
T Consensus 25 ~F~CPnCG~~ 34 (59)
T PRK14890 25 KFLCPNCGEV 34 (59)
T ss_pred EeeCCCCCCe
Confidence 3556666554
No 118
>PRK04023 DNA polymerase II large subunit; Validated
Probab=63.92 E-value=8.1 Score=39.01 Aligned_cols=9 Identities=33% Similarity=0.918 Sum_probs=5.8
Q ss_pred ccCCCCCCc
Q psy7185 200 HVCPICFKT 208 (311)
Q Consensus 200 ~~C~~C~~~ 208 (311)
+.|+.||..
T Consensus 639 frCP~CG~~ 647 (1121)
T PRK04023 639 RRCPFCGTH 647 (1121)
T ss_pred ccCCCCCCC
Confidence 567777654
No 119
>KOG4167|consensus
Probab=63.60 E-value=1.8 Score=41.52 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=22.7
Q ss_pred ceecccccccccChhhHHHHhhhC
Q psy7185 288 PYKCTVCIKGFAKSSNLKNHMTIH 311 (311)
Q Consensus 288 ~~~C~~C~~~F~~~~~L~~H~r~H 311 (311)
-|.|..|+|.|-.-..+..||++|
T Consensus 792 iFpCreC~kvF~KiKSrNAHMK~H 815 (907)
T KOG4167|consen 792 IFPCRECGKVFFKIKSRNAHMKTH 815 (907)
T ss_pred eeehHHHHHHHHHHhhhhHHHHHH
Confidence 399999999999999999999998
No 120
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=63.02 E-value=3.8 Score=24.98 Aligned_cols=10 Identities=20% Similarity=0.484 Sum_probs=5.0
Q ss_pred ccCCCCCCcc
Q psy7185 200 HVCPICFKTF 209 (311)
Q Consensus 200 ~~C~~C~~~f 209 (311)
|.|..||+.|
T Consensus 7 Y~C~~Cg~~~ 16 (49)
T COG1996 7 YKCARCGREV 16 (49)
T ss_pred EEhhhcCCee
Confidence 4455555544
No 121
>KOG2807|consensus
Probab=62.60 E-value=12 Score=32.58 Aligned_cols=85 Identities=20% Similarity=0.341 Sum_probs=47.3
Q ss_pred ccCCCCCCccCCchhHHHHHHhcCCCCCCcCCCCCCcCCChhHHHHHHHhhcCCCCcccC-------CCCcCccCCCCCC
Q psy7185 200 HVCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPGNLRTHSYSHSGSWPYKIH-------APSVGACGKSFPT 272 (311)
Q Consensus 200 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~-------~~~C~~C~~~f~~ 272 (311)
|.|+.|....- .-|..|+.|+-+.-....|.+-.+---.-+||... ..-|-.|+-.
T Consensus 277 y~CP~CkakvC--------------sLP~eCpiC~ltLVss~hLARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~--- 339 (378)
T KOG2807|consen 277 YFCPQCKAKVC--------------SLPIECPICSLTLVSSPHLARSYHHLFPLKPFVEIPETEYNGSRFCFACQGE--- 339 (378)
T ss_pred eeCCcccCeee--------------cCCccCCccceeEecchHHHHHHHhhcCCcchhhccccccCCCcceeeeccc---
Confidence 77777765432 35778888888877777666533211122222110 0014445111
Q ss_pred hHHHHHHHHHcCCCCceecccccccccChhhHHHHhhhC
Q psy7185 273 PGNLRTHSYSHSGSWPYKCTVCIKGFAKSSNLKNHMTIH 311 (311)
Q Consensus 273 ~~~L~~H~~~h~~~~~~~C~~C~~~F~~~~~L~~H~r~H 311 (311)
-.+...|.|..|...|-..-+...|-..|
T Consensus 340 ----------~~~~~~y~C~~Ck~~FCldCDv~iHesLh 368 (378)
T KOG2807|consen 340 ----------LLSSGRYRCESCKNVFCLDCDVFIHESLH 368 (378)
T ss_pred ----------cCCCCcEEchhccceeeccchHHHHhhhh
Confidence 12334588888888887777776665544
No 122
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=61.42 E-value=1.7 Score=31.38 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=19.4
Q ss_pred CcCccCCCCCChHHHHHHHHHcCCCCceecccccccccC
Q psy7185 262 SVGACGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAK 300 (311)
Q Consensus 262 ~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~F~~ 300 (311)
.|+.||..-..-..++.-......-.-|.|..|+..+..
T Consensus 64 ~Cp~Cg~~~a~f~~~Q~RsadE~~T~fy~C~~C~~~w~~ 102 (104)
T TIGR01384 64 ECPKCGHKEAYYWLLQTRRADEPETRFYKCTKCGYVWRE 102 (104)
T ss_pred CCCCCCCCeeEEEEeccCCCCCCcEEEEEeCCCCCeeEe
Confidence 488888654332222110000011123899999987753
No 123
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=60.96 E-value=5.2 Score=30.23 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=10.0
Q ss_pred ccCCCCCCccCCchhHHHHHHhcCC
Q psy7185 200 HVCPICFKTFTASSNLYYHRITHVK 224 (311)
Q Consensus 200 ~~C~~C~~~f~~~~~l~~H~~~h~~ 224 (311)
..|-+||+.|.. |.+|++.|+|
T Consensus 73 i~clecGk~~k~---LkrHL~~~~g 94 (132)
T PF05443_consen 73 IICLECGKKFKT---LKRHLRTHHG 94 (132)
T ss_dssp EE-TBT--EESB---HHHHHHHTT-
T ss_pred eEEccCCcccch---HHHHHHHccC
Confidence 455555555544 4566666554
No 124
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=60.30 E-value=5.4 Score=27.44 Aligned_cols=11 Identities=27% Similarity=0.498 Sum_probs=5.2
Q ss_pred CccCCCCCCcc
Q psy7185 199 PHVCPICFKTF 209 (311)
Q Consensus 199 ~~~C~~C~~~f 209 (311)
.|.|..|+..|
T Consensus 53 IW~C~kCg~~f 63 (89)
T COG1997 53 IWKCRKCGAKF 63 (89)
T ss_pred eEEcCCCCCee
Confidence 34555554444
No 125
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=60.29 E-value=11 Score=39.16 Aligned_cols=11 Identities=36% Similarity=0.624 Sum_probs=6.6
Q ss_pred CccCCCCCCcc
Q psy7185 199 PHVCPICFKTF 209 (311)
Q Consensus 199 ~~~C~~C~~~f 209 (311)
+|.|+.||...
T Consensus 692 vy~CPsCGaev 702 (1337)
T PRK14714 692 VYVCPDCGAEV 702 (1337)
T ss_pred ceeCccCCCcc
Confidence 35666666643
No 126
>KOG2071|consensus
Probab=60.02 E-value=9.2 Score=36.14 Aligned_cols=26 Identities=31% Similarity=0.677 Sum_probs=18.0
Q ss_pred CCCccCCCCCCCCCChHHHHHHHHHh
Q psy7185 169 EKPHVCDVCSKGFSTSSSLNTHRRIH 194 (311)
Q Consensus 169 ~~~~~C~~C~~~f~~~~~l~~H~~~h 194 (311)
..+-.|..||.+|........||..|
T Consensus 416 ~~pnqC~~CG~R~~~~ee~sk~md~H 441 (579)
T KOG2071|consen 416 DSPNQCKSCGLRFDDSEERSKHMDIH 441 (579)
T ss_pred CCcchhcccccccccchhhhhHhhhh
Confidence 45567777777777777766666555
No 127
>PF15269 zf-C2H2_7: Zinc-finger
Probab=59.33 E-value=6.3 Score=23.26 Aligned_cols=21 Identities=43% Similarity=0.664 Sum_probs=12.0
Q ss_pred eecccccccccChhhHHHHhh
Q psy7185 289 YKCTVCIKGFAKSSNLKNHMT 309 (311)
Q Consensus 289 ~~C~~C~~~F~~~~~L~~H~r 309 (311)
|+|-.|..+...++.|-.||+
T Consensus 21 ykcfqcpftc~~kshl~nhmk 41 (54)
T PF15269_consen 21 YKCFQCPFTCNEKSHLFNHMK 41 (54)
T ss_pred ceeecCCcccchHHHHHHHHH
Confidence 445555555555666665554
No 128
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=58.51 E-value=6.8 Score=33.76 Aligned_cols=47 Identities=26% Similarity=0.474 Sum_probs=29.8
Q ss_pred cCccCCCCCChHHHHHHHHHcCCCCceecccccccccChhhHHHHhhhC
Q psy7185 263 VGACGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAKSSNLKNHMTIH 311 (311)
Q Consensus 263 C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~F~~~~~L~~H~r~H 311 (311)
|-.|.-.|.-...-.. ..-+....|+|+.|...|-..-+.-.|...|
T Consensus 365 Cf~CQ~~fp~~~~~~~--~~~~ss~rY~Ce~CK~~FC~dCdvfiHe~Lh 411 (421)
T COG5151 365 CFVCQGPFPKPPVSPF--DESTSSGRYQCELCKSTFCSDCDVFIHETLH 411 (421)
T ss_pred ceeccCCCCCCCCCcc--cccccccceechhhhhhhhhhhHHHHHHHHh
Confidence 6677777764321100 0112235699999999998888888886554
No 129
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=58.16 E-value=2.6 Score=41.33 Aligned_cols=14 Identities=21% Similarity=0.477 Sum_probs=10.3
Q ss_pred CCCCceeccccccc
Q psy7185 284 SGSWPYKCTVCIKG 297 (311)
Q Consensus 284 ~~~~~~~C~~C~~~ 297 (311)
....|..|+.||-.
T Consensus 471 ~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 471 QEPIPQSCPECGSE 484 (730)
T ss_pred CCCCCCCCCCCCCC
Confidence 44578889999854
No 130
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=57.70 E-value=4.8 Score=21.76 Aligned_cols=26 Identities=15% Similarity=0.405 Sum_probs=12.6
Q ss_pred CcCccCCCCCChHHHHHHHHHcCCCCceecccccccc
Q psy7185 262 SVGACGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGF 298 (311)
Q Consensus 262 ~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~F 298 (311)
.|+.|+..+.. .....|.|+.|+..+
T Consensus 4 ~Cp~C~se~~y-----------~D~~~~vCp~C~~ew 29 (30)
T PF08274_consen 4 KCPLCGSEYTY-----------EDGELLVCPECGHEW 29 (30)
T ss_dssp --TTT-----E-----------E-SSSEEETTTTEEE
T ss_pred CCCCCCCccee-----------ccCCEEeCCcccccC
Confidence 48888877765 234568899887643
No 131
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=57.26 E-value=6 Score=25.00 Aligned_cols=39 Identities=26% Similarity=0.563 Sum_probs=18.9
Q ss_pred CccCCC--CCCccCCchhHHHHHHhcCCCCCCcCCC----CCCcCC
Q psy7185 199 PHVCPI--CFKTFTASSNLYYHRITHVKDKPHKCGA----CGKSFP 238 (311)
Q Consensus 199 ~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~ 238 (311)
+..|+. |...+. +..|..|+...-..++..|++ |+..+.
T Consensus 9 ~v~C~~~cc~~~i~-r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~ 53 (60)
T PF02176_consen 9 PVPCPNGCCNEMIP-RKELDDHLENECPKRPVPCPYSPYGCKERVP 53 (60)
T ss_dssp EEE-TT--S-BEEE-CCCHHHHHHTTSTTSEEE-SS----S--EEE
T ss_pred EeeCCCCCccccee-HHHHHHHHHccCCCCcEECCCCCCCCCCccc
Confidence 355655 333333 345677776555556666666 665553
No 132
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=56.65 E-value=2.9 Score=34.47 Aligned_cols=26 Identities=31% Similarity=0.690 Sum_probs=13.8
Q ss_pred CCcCCCCCCcCCChhHHHHHHHhhcC
Q psy7185 227 PHKCGACGKSFPTPGNLRTHSYSHSG 252 (311)
Q Consensus 227 ~~~C~~C~~~f~~~~~l~~H~~~h~~ 252 (311)
.|.|+.|+|.|....-+.+|+..-|.
T Consensus 77 K~~C~lc~KlFkg~eFV~KHI~nKH~ 102 (214)
T PF04959_consen 77 KWRCPLCGKLFKGPEFVRKHIFNKHP 102 (214)
T ss_dssp EEEE-SSS-EESSHHHHHHHHHHH-H
T ss_pred EECCCCCCcccCChHHHHHHHhhcCH
Confidence 36666666666666666666654443
No 133
>KOG4167|consensus
Probab=56.47 E-value=3.3 Score=39.85 Aligned_cols=27 Identities=33% Similarity=0.689 Sum_probs=21.9
Q ss_pred CCccccCcCccccCChhhHHHHHHhhc
Q psy7185 141 KTMLPCTVCGKSFDRPSLLKRHTRTHT 167 (311)
Q Consensus 141 ~~~~~C~~C~~~f~~~~~l~~H~~~h~ 167 (311)
.+.|.|..|++.|....++..||+.|.
T Consensus 790 ~giFpCreC~kvF~KiKSrNAHMK~Hr 816 (907)
T KOG4167|consen 790 TGIFPCRECGKVFFKIKSRNAHMKTHR 816 (907)
T ss_pred CceeehHHHHHHHHHHhhhhHHHHHHH
Confidence 466888888888888888888888774
No 134
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.12 E-value=5.9 Score=28.43 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=18.0
Q ss_pred cCccCCCCCChHHHHHHHHHcCCCCceeccccccccc
Q psy7185 263 VGACGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFA 299 (311)
Q Consensus 263 C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~F~ 299 (311)
|+.|++.|... ...|..|++||++|.
T Consensus 12 dPetg~KFYDL-----------NrdPiVsPytG~s~P 37 (129)
T COG4530 12 DPETGKKFYDL-----------NRDPIVSPYTGKSYP 37 (129)
T ss_pred Cccccchhhcc-----------CCCccccCcccccch
Confidence 67777777643 346777888888774
No 135
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=55.02 E-value=7.9 Score=28.99 Aligned_cols=13 Identities=31% Similarity=0.769 Sum_probs=6.6
Q ss_pred ccCCCCCCccCCc
Q psy7185 200 HVCPICFKTFTAS 212 (311)
Q Consensus 200 ~~C~~C~~~f~~~ 212 (311)
++|..||+.|...
T Consensus 2 H~Ct~Cg~~f~dg 14 (131)
T PF09845_consen 2 HQCTKCGRVFEDG 14 (131)
T ss_pred cccCcCCCCcCCC
Confidence 4455555555443
No 136
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=54.80 E-value=9.1 Score=28.92 Aligned_cols=27 Identities=48% Similarity=0.879 Sum_probs=16.8
Q ss_pred CCCccccCcCccccCChhhHHHHHHhhcCC
Q psy7185 140 SKTMLPCTVCGKSFDRPSLLKRHTRTHTGE 169 (311)
Q Consensus 140 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~ 169 (311)
......|-+||+.|.. |.+|++.|+|-
T Consensus 69 ~~d~i~clecGk~~k~---LkrHL~~~~gl 95 (132)
T PF05443_consen 69 TPDYIICLECGKKFKT---LKRHLRTHHGL 95 (132)
T ss_dssp -SS-EE-TBT--EESB---HHHHHHHTT-S
T ss_pred ccCeeEEccCCcccch---HHHHHHHccCC
Confidence 3455789999999976 68999988764
No 137
>KOG2593|consensus
Probab=53.21 E-value=15 Score=33.30 Aligned_cols=39 Identities=21% Similarity=0.395 Sum_probs=25.4
Q ss_pred cCCCCccCCCCCCCCCChHHHHHHHHHhcCCCCccCCCCCCc
Q psy7185 167 TGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKT 208 (311)
Q Consensus 167 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 208 (311)
+....|.|+.|.+.|.....+ +..-.....|.|..|+-.
T Consensus 124 t~~~~Y~Cp~C~kkyt~Lea~---~L~~~~~~~F~C~~C~ge 162 (436)
T KOG2593|consen 124 TNVAGYVCPNCQKKYTSLEAL---QLLDNETGEFHCENCGGE 162 (436)
T ss_pred cccccccCCccccchhhhHHH---HhhcccCceEEEecCCCc
Confidence 344568999999888765544 223333456889888753
No 138
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=52.94 E-value=11 Score=26.20 Aligned_cols=14 Identities=29% Similarity=0.771 Sum_probs=8.5
Q ss_pred CCccCCCCCCCCCC
Q psy7185 170 KPHVCDVCSKGFST 183 (311)
Q Consensus 170 ~~~~C~~C~~~f~~ 183 (311)
.|-.|..||+.|..
T Consensus 57 ~Pa~CkkCGfef~~ 70 (97)
T COG3357 57 RPARCKKCGFEFRD 70 (97)
T ss_pred cChhhcccCccccc
Confidence 34566667666654
No 139
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=51.19 E-value=4.8 Score=24.81 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=13.6
Q ss_pred CCCcCCCCCCcCCChhHHHHHHHhhc
Q psy7185 226 KPHKCGACGKSFPTPGNLRTHSYSHS 251 (311)
Q Consensus 226 ~~~~C~~C~~~f~~~~~l~~H~~~h~ 251 (311)
..|+|+.|+..|=-.=++-.|...|.
T Consensus 20 ~~y~C~~C~~~FC~dCD~fiHE~LH~ 45 (51)
T PF07975_consen 20 SRYRCPKCKNHFCIDCDVFIHETLHN 45 (51)
T ss_dssp EEE--TTTT--B-HHHHHTTTTTS-S
T ss_pred CeEECCCCCCccccCcChhhhccccC
Confidence 45777777777777767666766664
No 140
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=50.74 E-value=6.7 Score=29.82 Aligned_cols=11 Identities=27% Similarity=0.700 Sum_probs=6.2
Q ss_pred ccCCCCCCCCC
Q psy7185 172 HVCDVCSKGFS 182 (311)
Q Consensus 172 ~~C~~C~~~f~ 182 (311)
+.|..||..|.
T Consensus 71 ~~C~~CG~~~~ 81 (135)
T PRK03824 71 LKCRNCGNEWS 81 (135)
T ss_pred EECCCCCCEEe
Confidence 55666665554
No 141
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=50.04 E-value=7.3 Score=19.85 Aligned_cols=10 Identities=30% Similarity=0.753 Sum_probs=6.7
Q ss_pred Cceecccccc
Q psy7185 287 WPYKCTVCIK 296 (311)
Q Consensus 287 ~~~~C~~C~~ 296 (311)
-+|.|+.||+
T Consensus 15 v~f~CPnCG~ 24 (24)
T PF07754_consen 15 VPFPCPNCGF 24 (24)
T ss_pred ceEeCCCCCC
Confidence 3577777763
No 142
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=49.27 E-value=11 Score=30.99 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=19.9
Q ss_pred CCCceecccccccccChhhHHHHhhh
Q psy7185 285 GSWPYKCTVCIKGFAKSSNLKNHMTI 310 (311)
Q Consensus 285 ~~~~~~C~~C~~~F~~~~~L~~H~r~ 310 (311)
.+..|.|+.|+|.|.-..-+.+|+..
T Consensus 74 ~~~K~~C~lc~KlFkg~eFV~KHI~n 99 (214)
T PF04959_consen 74 DEDKWRCPLCGKLFKGPEFVRKHIFN 99 (214)
T ss_dssp SSEEEEE-SSS-EESSHHHHHHHHHH
T ss_pred cCCEECCCCCCcccCChHHHHHHHhh
Confidence 34569999999999999999999763
No 143
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=49.16 E-value=8.1 Score=38.07 Aligned_cols=12 Identities=33% Similarity=0.955 Sum_probs=6.4
Q ss_pred CCCCcCCCCCCc
Q psy7185 225 DKPHKCGACGKS 236 (311)
Q Consensus 225 ~~~~~C~~C~~~ 236 (311)
..|..|+.||-.
T Consensus 473 ~~p~~Cp~Cgs~ 484 (730)
T COG1198 473 PIPQSCPECGSE 484 (730)
T ss_pred CCCCCCCCCCCC
Confidence 445556666543
No 144
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=48.84 E-value=10 Score=27.25 Aligned_cols=30 Identities=13% Similarity=0.473 Sum_probs=21.1
Q ss_pred CCcCccCCCCCChHHHHHHHHHcCCCCceecccccccccCh
Q psy7185 261 PSVGACGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAKS 301 (311)
Q Consensus 261 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~F~~~ 301 (311)
+.|+.|+..|... ....|.|+.|+..++..
T Consensus 3 p~CP~C~seytY~-----------dg~~~iCpeC~~EW~~~ 32 (109)
T TIGR00686 3 PPCPKCNSEYTYH-----------DGTQLICPSCLYEWNEN 32 (109)
T ss_pred CcCCcCCCcceEe-----------cCCeeECcccccccccc
Confidence 3588888887754 22348899998887644
No 145
>PF14353 CpXC: CpXC protein
Probab=47.53 E-value=7.6 Score=29.10 Aligned_cols=14 Identities=21% Similarity=0.648 Sum_probs=8.3
Q ss_pred ceecccccccccCh
Q psy7185 288 PYKCTVCIKGFAKS 301 (311)
Q Consensus 288 ~~~C~~C~~~F~~~ 301 (311)
.|.|+.||..|.-.
T Consensus 38 ~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 38 SFTCPSCGHKFRLE 51 (128)
T ss_pred EEECCCCCCceecC
Confidence 46666666666543
No 146
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=46.73 E-value=27 Score=34.08 Aligned_cols=53 Identities=23% Similarity=0.541 Sum_probs=30.3
Q ss_pred cccCcCccccCChhhHHHHHHhhcCCCCccCCCCCCCCCChHHHHHHHHHhcCCCCccCCCCCCccCCchhHHHHHHhcC
Q psy7185 144 LPCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHV 223 (311)
Q Consensus 144 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~ 223 (311)
..|+.||.... ...-.|..||..+.. -.|+.||....
T Consensus 2 ~~Cp~Cg~~n~--------------~~akFC~~CG~~l~~----------------~~Cp~CG~~~~------------- 38 (645)
T PRK14559 2 LICPQCQFENP--------------NNNRFCQKCGTSLTH----------------KPCPQCGTEVP------------- 38 (645)
T ss_pred CcCCCCCCcCC--------------CCCccccccCCCCCC----------------CcCCCCCCCCC-------------
Confidence 46777776522 122347778776631 14777776522
Q ss_pred CCCCCcCCCCCCcCCCh
Q psy7185 224 KDKPHKCGACGKSFPTP 240 (311)
Q Consensus 224 ~~~~~~C~~C~~~f~~~ 240 (311)
...-.|+.||......
T Consensus 39 -~~~~fC~~CG~~~~~~ 54 (645)
T PRK14559 39 -VDEAHCPNCGAETGTI 54 (645)
T ss_pred -cccccccccCCcccch
Confidence 2233577777765554
No 147
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=46.63 E-value=12 Score=34.04 Aligned_cols=36 Identities=19% Similarity=0.473 Sum_probs=25.2
Q ss_pred cccCCCCcCccCCCCCChHHHHHHHHHcCCCCceecccccccccChh
Q psy7185 256 YKIHAPSVGACGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAKSS 302 (311)
Q Consensus 256 ~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~F~~~~ 302 (311)
|....+.|+.||....++ |..-|+|+.||+++....
T Consensus 346 ~~~~~p~Cp~Cg~~m~S~-----------G~~g~rC~kCg~~~~~~~ 381 (421)
T COG1571 346 YERVNPVCPRCGGRMKSA-----------GRNGFRCKKCGTRARETL 381 (421)
T ss_pred eEEcCCCCCccCCchhhc-----------CCCCcccccccccCCccc
Confidence 444556799998766543 344799999998887643
No 148
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=46.31 E-value=22 Score=21.17 Aligned_cols=10 Identities=40% Similarity=0.833 Sum_probs=5.1
Q ss_pred CCCcCCCCCC
Q psy7185 226 KPHKCGACGK 235 (311)
Q Consensus 226 ~~~~C~~C~~ 235 (311)
..|+|..|++
T Consensus 36 ~~~~C~~C~~ 45 (46)
T PF12760_consen 36 GRYRCKACRK 45 (46)
T ss_pred CeEECCCCCC
Confidence 4455555543
No 149
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=46.30 E-value=15 Score=33.55 Aligned_cols=30 Identities=23% Similarity=0.554 Sum_probs=21.6
Q ss_pred cCCCCCCccCCchhHHHHHHhcCCCCCCcCCCCCCcCCChh
Q psy7185 201 VCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPTPG 241 (311)
Q Consensus 201 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 241 (311)
.|+.||....+. |..-|+|+.||+.+....
T Consensus 352 ~Cp~Cg~~m~S~-----------G~~g~rC~kCg~~~~~~~ 381 (421)
T COG1571 352 VCPRCGGRMKSA-----------GRNGFRCKKCGTRARETL 381 (421)
T ss_pred CCCccCCchhhc-----------CCCCcccccccccCCccc
Confidence 688888876553 334788888888877654
No 150
>KOG2593|consensus
Probab=46.20 E-value=20 Score=32.63 Aligned_cols=40 Identities=25% Similarity=0.535 Sum_probs=27.0
Q ss_pred hcCCCCccCCCCCCccCCchhHHHHHHhcCCCCCCcCCCCCCc
Q psy7185 194 HSGERPHVCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKS 236 (311)
Q Consensus 194 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 236 (311)
-+...-|.|+.|.+.|.....++ ..-...-.|.|..|+-.
T Consensus 123 ~t~~~~Y~Cp~C~kkyt~Lea~~---L~~~~~~~F~C~~C~ge 162 (436)
T KOG2593|consen 123 DTNVAGYVCPNCQKKYTSLEALQ---LLDNETGEFHCENCGGE 162 (436)
T ss_pred ccccccccCCccccchhhhHHHH---hhcccCceEEEecCCCc
Confidence 34455699999999998755433 33333456999999754
No 151
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=44.67 E-value=93 Score=24.28 Aligned_cols=52 Identities=25% Similarity=0.456 Sum_probs=30.0
Q ss_pred CCccccCcCc-cccCChhhHHHHHHhhcCCCCccCCC--CCCCCCChHHHHHHHHHhc
Q psy7185 141 KTMLPCTVCG-KSFDRPSLLKRHTRTHTGEKPHVCDV--CSKGFSTSSSLNTHRRIHS 195 (311)
Q Consensus 141 ~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~ 195 (311)
.....|+.|- .++... ... -.+.+-..++-.|.. |.+. .+...|++|.+.-|
T Consensus 78 ~~~L~CPLCRG~V~GWt-vve-~AR~~LN~K~RsC~~e~C~F~-GtY~eLrKHar~~H 132 (162)
T PF07800_consen 78 QPELACPLCRGEVKGWT-VVE-PARRFLNAKKRSCSQESCSFS-GTYSELRKHARSEH 132 (162)
T ss_pred cccccCccccCceeceE-Ech-HHHHHhccCCccCcccccccc-cCHHHHHHHHHhhC
Confidence 3568899994 444332 111 133444555666655 5543 46678999987643
No 152
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=43.54 E-value=26 Score=20.37 Aligned_cols=23 Identities=26% Similarity=0.670 Sum_probs=12.4
Q ss_pred CcCCCCCCcCCC--hhHHHHHHHhh
Q psy7185 228 HKCGACGKSFPT--PGNLRTHSYSH 250 (311)
Q Consensus 228 ~~C~~C~~~f~~--~~~l~~H~~~h 250 (311)
-.|+.||..|.. ..+-..|.+-|
T Consensus 14 ~~C~~CgM~Y~~~~~eD~~~H~~yH 38 (41)
T PF13878_consen 14 TTCPTCGMLYSPGSPEDEKLHKKYH 38 (41)
T ss_pred cCCCCCCCEECCCCHHHHHHHHHHH
Confidence 466666665543 44455555444
No 153
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=43.32 E-value=16 Score=26.00 Aligned_cols=12 Identities=42% Similarity=1.162 Sum_probs=5.8
Q ss_pred CcCCCCCCcCCC
Q psy7185 228 HKCGACGKSFPT 239 (311)
Q Consensus 228 ~~C~~C~~~f~~ 239 (311)
.+|..||..|.+
T Consensus 3 H~CtrCG~vf~~ 14 (112)
T COG3364 3 HQCTRCGEVFDD 14 (112)
T ss_pred ceeccccccccc
Confidence 444455555544
No 154
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=43.26 E-value=20 Score=37.35 Aligned_cols=37 Identities=24% Similarity=0.587 Sum_probs=26.5
Q ss_pred ccCCCCCCCCCChHHHHHHHHHhcCCCCccCCCCCCccCCchhHHHHHHhcCCCCCCcCCCCCCcCCC
Q psy7185 172 HVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYHRITHVKDKPHKCGACGKSFPT 239 (311)
Q Consensus 172 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 239 (311)
+.|+.||..-. ...|+.||... +.+|.|+.||.....
T Consensus 668 rkCPkCG~~t~----------------~~fCP~CGs~t---------------e~vy~CPsCGaev~~ 704 (1337)
T PRK14714 668 RRCPSCGTETY----------------ENRCPDCGTHT---------------EPVYVCPDCGAEVPP 704 (1337)
T ss_pred EECCCCCCccc----------------cccCcccCCcC---------------CCceeCccCCCccCC
Confidence 78999987521 13799999764 235899999986543
No 155
>PRK10220 hypothetical protein; Provisional
Probab=43.21 E-value=17 Score=26.24 Aligned_cols=30 Identities=17% Similarity=0.510 Sum_probs=20.7
Q ss_pred CCcCccCCCCCChHHHHHHHHHcCCCCceecccccccccCh
Q psy7185 261 PSVGACGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAKS 301 (311)
Q Consensus 261 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~F~~~ 301 (311)
+.|+.|+..|... ....|.|+.|+..++..
T Consensus 4 P~CP~C~seytY~-----------d~~~~vCpeC~hEW~~~ 33 (111)
T PRK10220 4 PHCPKCNSEYTYE-----------DNGMYICPECAHEWNDA 33 (111)
T ss_pred CcCCCCCCcceEc-----------CCCeEECCcccCcCCcc
Confidence 3588888877654 22348899998877644
No 156
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=43.11 E-value=13 Score=22.87 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=9.1
Q ss_pred Cceecccccccc
Q psy7185 287 WPYKCTVCIKGF 298 (311)
Q Consensus 287 ~~~~C~~C~~~F 298 (311)
..+.|..||..+
T Consensus 36 ~r~~C~~Cgyt~ 47 (50)
T PRK00432 36 DRWHCGKCGYTE 47 (50)
T ss_pred CcEECCCcCCEE
Confidence 568888888765
No 157
>KOG4124|consensus
Probab=41.53 E-value=4.8 Score=35.25 Aligned_cols=22 Identities=41% Similarity=0.889 Sum_probs=18.2
Q ss_pred CCceecccccccccChhhHHHH
Q psy7185 286 SWPYKCTVCIKGFAKSSNLKNH 307 (311)
Q Consensus 286 ~~~~~C~~C~~~F~~~~~L~~H 307 (311)
.|+|.|++|.+++.....|.-|
T Consensus 396 nk~~r~~i~~~~~k~~~~l~~~ 417 (442)
T KOG4124|consen 396 NKPYRCEVCSKRYKNLNGLKYH 417 (442)
T ss_pred cCcccChhhhhhhccCCCCCce
Confidence 5889999999999887776555
No 158
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=41.33 E-value=28 Score=29.19 Aligned_cols=13 Identities=31% Similarity=0.797 Sum_probs=7.8
Q ss_pred CccCCCCCCccCC
Q psy7185 199 PHVCPICFKTFTA 211 (311)
Q Consensus 199 ~~~C~~C~~~f~~ 211 (311)
.|.|+.|+..|.-
T Consensus 155 ef~C~~C~h~F~G 167 (278)
T PF15135_consen 155 EFHCPKCRHNFRG 167 (278)
T ss_pred eeecccccccchh
Confidence 3666666666654
No 159
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=40.52 E-value=14 Score=27.80 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=9.9
Q ss_pred ccCCCCCCCCCChHHHHHHHHHh
Q psy7185 172 HVCDVCSKGFSTSSSLNTHRRIH 194 (311)
Q Consensus 172 ~~C~~C~~~f~~~~~l~~H~~~h 194 (311)
..|-++|+.| .+|++|+.+|
T Consensus 77 IicLEDGkkf---KSLKRHL~t~ 96 (148)
T COG4957 77 IICLEDGKKF---KSLKRHLTTH 96 (148)
T ss_pred EEEeccCcch---HHHHHHHhcc
Confidence 3455555555 2344555544
No 160
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=39.58 E-value=16 Score=26.85 Aligned_cols=12 Identities=33% Similarity=0.684 Sum_probs=7.4
Q ss_pred ccCCCCCCCCCC
Q psy7185 172 HVCDVCSKGFST 183 (311)
Q Consensus 172 ~~C~~C~~~f~~ 183 (311)
..|..|+..|..
T Consensus 71 ~~C~~Cg~~~~~ 82 (115)
T TIGR00100 71 CECEDCSEEVSP 82 (115)
T ss_pred EEcccCCCEEec
Confidence 567777766543
No 161
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=39.47 E-value=14 Score=21.27 Aligned_cols=14 Identities=29% Similarity=0.619 Sum_probs=11.4
Q ss_pred ceecccccccccCh
Q psy7185 288 PYKCTVCIKGFAKS 301 (311)
Q Consensus 288 ~~~C~~C~~~F~~~ 301 (311)
||+|..|++.|-..
T Consensus 12 ~f~C~~C~~~FC~~ 25 (39)
T smart00154 12 GFKCRHCGNLFCGE 25 (39)
T ss_pred CeECCccCCccccc
Confidence 78999999888653
No 162
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.35 E-value=16 Score=21.45 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=8.6
Q ss_pred ecccccccccChhhH
Q psy7185 290 KCTVCIKGFAKSSNL 304 (311)
Q Consensus 290 ~C~~C~~~F~~~~~L 304 (311)
.|.+|++.|+.+.-+
T Consensus 10 ~C~~C~rpf~WRKKW 24 (42)
T PF10013_consen 10 ICPVCGRPFTWRKKW 24 (42)
T ss_pred cCcccCCcchHHHHH
Confidence 466666666655443
No 163
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=38.58 E-value=18 Score=26.52 Aligned_cols=11 Identities=27% Similarity=0.371 Sum_probs=6.8
Q ss_pred ccCCCCCCCCC
Q psy7185 172 HVCDVCSKGFS 182 (311)
Q Consensus 172 ~~C~~C~~~f~ 182 (311)
+.|..|+..|.
T Consensus 71 ~~C~~Cg~~~~ 81 (113)
T PRK12380 71 AWCWDCSQVVE 81 (113)
T ss_pred EEcccCCCEEe
Confidence 56666666553
No 164
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=37.92 E-value=6.2 Score=22.33 Aligned_cols=10 Identities=30% Similarity=1.108 Sum_probs=4.7
Q ss_pred cCCCCCCccC
Q psy7185 201 VCPICFKTFT 210 (311)
Q Consensus 201 ~C~~C~~~f~ 210 (311)
.|+.||..|.
T Consensus 3 ~C~~Cg~~Yh 12 (36)
T PF05191_consen 3 ICPKCGRIYH 12 (36)
T ss_dssp EETTTTEEEE
T ss_pred CcCCCCCccc
Confidence 3445554443
No 165
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=37.48 E-value=13 Score=28.61 Aligned_cols=9 Identities=22% Similarity=0.929 Sum_probs=4.0
Q ss_pred ccCCCCCCCC
Q psy7185 172 HVCDVCSKGF 181 (311)
Q Consensus 172 ~~C~~C~~~f 181 (311)
|.|. |+..|
T Consensus 118 Y~C~-C~q~~ 126 (156)
T COG3091 118 YRCQ-CQQHY 126 (156)
T ss_pred EEee-cCCcc
Confidence 4444 44443
No 166
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=37.42 E-value=20 Score=22.44 Aligned_cols=9 Identities=33% Similarity=0.748 Sum_probs=3.9
Q ss_pred cCCCCCCcc
Q psy7185 201 VCPICFKTF 209 (311)
Q Consensus 201 ~C~~C~~~f 209 (311)
.|+.|+..+
T Consensus 4 ~CP~CG~~i 12 (54)
T TIGR01206 4 ECPDCGAEI 12 (54)
T ss_pred CCCCCCCEE
Confidence 444444433
No 167
>KOG4377|consensus
Probab=37.26 E-value=15 Score=33.01 Aligned_cols=65 Identities=23% Similarity=0.423 Sum_probs=38.3
Q ss_pred CccCC--CCCCCCCChHHHHHHHHHhcCCC------------CccC--CCCCCccCCchhHHHHHHhcCCCC-------C
Q psy7185 171 PHVCD--VCSKGFSTSSSLNTHRRIHSGER------------PHVC--PICFKTFTASSNLYYHRITHVKDK-------P 227 (311)
Q Consensus 171 ~~~C~--~C~~~f~~~~~l~~H~~~h~~~~------------~~~C--~~C~~~f~~~~~l~~H~~~h~~~~-------~ 227 (311)
-|.|. .|+..+..+.++.+|...|.... .|.| ..|.+ +-++...|-..|+... -
T Consensus 271 hyhcl~e~C~ykr~~k~DvirH~~~hkkrdnsL~dgf~rfs~syhC~~~~C~k---sTsdV~~h~nFht~~~n~Gfrrth 347 (480)
T KOG4377|consen 271 HYHCLNEYCFYKRGQKNDVIRHVEIHKKRDNSLIDGFHRFSNSYHCTGQICEK---STSDVLLHDNFHTDKRNNGFRRTH 347 (480)
T ss_pred hhcccCccccccccchhhhHHHHHHHhhcccccccchhhcCccchhhhcccCc---ccccccccCccccccccCceecce
Confidence 36664 48877777888888888774321 2455 34766 3444556655554321 2
Q ss_pred CcCCCCC--CcCC
Q psy7185 228 HKCGACG--KSFP 238 (311)
Q Consensus 228 ~~C~~C~--~~f~ 238 (311)
|-|..|+ -.|.
T Consensus 348 fhC~r~gCTdtfK 360 (480)
T KOG4377|consen 348 FHCQRIGCTDTFK 360 (480)
T ss_pred eEEeccCCccccc
Confidence 6676666 4444
No 168
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=37.14 E-value=8.1 Score=24.09 Aligned_cols=11 Identities=55% Similarity=1.241 Sum_probs=5.7
Q ss_pred cCCCCCCcCCC
Q psy7185 229 KCGACGKSFPT 239 (311)
Q Consensus 229 ~C~~C~~~f~~ 239 (311)
+|+.||+.|..
T Consensus 7 ~C~~Cg~~~~~ 17 (54)
T PF14446_consen 7 KCPVCGKKFKD 17 (54)
T ss_pred cChhhCCcccC
Confidence 45555555543
No 169
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.52 E-value=5.8 Score=32.69 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=9.8
Q ss_pred CCCcCCCCCCcCCChhHHH
Q psy7185 226 KPHKCGACGKSFPTPGNLR 244 (311)
Q Consensus 226 ~~~~C~~C~~~f~~~~~l~ 244 (311)
+.+.||.|+..|....-+.
T Consensus 18 k~ieCPvC~tkFkkeev~t 36 (267)
T COG1655 18 KTIECPVCNTKFKKEEVKT 36 (267)
T ss_pred ceeccCcccchhhhhheec
Confidence 3455666665555544333
No 170
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=36.24 E-value=9.3 Score=29.29 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=7.8
Q ss_pred ccCCCCCCCCCChH
Q psy7185 172 HVCDVCSKGFSTSS 185 (311)
Q Consensus 172 ~~C~~C~~~f~~~~ 185 (311)
-.|..|++.|.+..
T Consensus 29 ReC~~C~~RFTTyE 42 (147)
T TIGR00244 29 RECLECHERFTTFE 42 (147)
T ss_pred ccCCccCCccceee
Confidence 44666666665543
No 171
>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.
Probab=35.40 E-value=15 Score=21.60 Aligned_cols=15 Identities=40% Similarity=0.908 Sum_probs=9.5
Q ss_pred CceecccccccccCh
Q psy7185 287 WPYKCTVCIKGFAKS 301 (311)
Q Consensus 287 ~~~~C~~C~~~F~~~ 301 (311)
.||.|+.|++.|=..
T Consensus 12 ~~~~C~~C~~~FC~~ 26 (43)
T PF01428_consen 12 LPFKCKHCGKSFCLK 26 (43)
T ss_dssp SHEE-TTTS-EE-TT
T ss_pred CCeECCCCCcccCcc
Confidence 479999999988543
No 172
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=35.33 E-value=12 Score=32.80 Aligned_cols=77 Identities=23% Similarity=0.459 Sum_probs=39.6
Q ss_pred CccccCcCccccCChhhHHHHHHhhcCCCCccCCCCCCCCCChHHHHHHHHHhcCCCCccCCCCCCccCCchhHHHH-HH
Q psy7185 142 TMLPCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKTFTASSNLYYH-RI 220 (311)
Q Consensus 142 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~ 220 (311)
..-.|+.||..=.. + + .+.....|.+-..|..|+..+.. ....|+.||.. ..|... ..
T Consensus 186 ~~~~CPvCGs~P~~-s-~-v~~~~~~G~RyL~CslC~teW~~--------------~R~~C~~Cg~~----~~l~y~~~~ 244 (309)
T PRK03564 186 QRQFCPVCGSMPVS-S-V-VQIGTTQGLRYLHCNLCESEWHV--------------VRVKCSNCEQS----GKLHYWSLD 244 (309)
T ss_pred CCCCCCCCCCcchh-h-e-eeccCCCCceEEEcCCCCCcccc--------------cCccCCCCCCC----Cceeeeeec
Confidence 34568888864221 1 1 12223445667788888776532 23678888852 112111 00
Q ss_pred hc-CCCCCCcCCCCCCcCCC
Q psy7185 221 TH-VKDKPHKCGACGKSFPT 239 (311)
Q Consensus 221 ~h-~~~~~~~C~~C~~~f~~ 239 (311)
.- .+.+...|..|+.-++.
T Consensus 245 ~~~~~~r~e~C~~C~~YlK~ 264 (309)
T PRK03564 245 SEQAAVKAESCGDCGTYLKI 264 (309)
T ss_pred CCCcceEeeeccccccccee
Confidence 00 12345678878755443
No 173
>KOG3408|consensus
Probab=34.33 E-value=25 Score=25.92 Aligned_cols=23 Identities=26% Similarity=0.632 Sum_probs=14.6
Q ss_pred ceecccccccccChhhHHHHhhh
Q psy7185 288 PYKCTVCIKGFAKSSNLKNHMTI 310 (311)
Q Consensus 288 ~~~C~~C~~~F~~~~~L~~H~r~ 310 (311)
.|-|-.|.+-|.+...|..|.++
T Consensus 57 qfyCi~CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 57 QFYCIECARYFIDAKALKTHFKT 79 (129)
T ss_pred eeehhhhhhhhcchHHHHHHHhc
Confidence 36666666666666666666553
No 174
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=34.25 E-value=30 Score=22.50 Aligned_cols=29 Identities=14% Similarity=0.386 Sum_probs=19.5
Q ss_pred CcCccCCCCCChHHHHHHHHHcCCCCceecccccccccC
Q psy7185 262 SVGACGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFAK 300 (311)
Q Consensus 262 ~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~F~~ 300 (311)
.|+.||..-.. -...+.|.|+.||..+..
T Consensus 30 ~C~~CG~~~~~----------~~~~r~~~C~~Cg~~~~r 58 (69)
T PF07282_consen 30 TCPRCGHRNKK----------RRSGRVFTCPNCGFEMDR 58 (69)
T ss_pred CccCccccccc----------ccccceEEcCCCCCEECc
Confidence 47888876554 123456889999887654
No 175
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.42 E-value=37 Score=32.15 Aligned_cols=48 Identities=27% Similarity=0.503 Sum_probs=25.2
Q ss_pred cccCcCccccCChhhHHHHHHhhcCCCCccCCCCCCCCCChHHHHHHHHHhcCCCCccCCCCCC
Q psy7185 144 LPCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFK 207 (311)
Q Consensus 144 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 207 (311)
..|..||....-..- ...+..|.......|..||... ..|..|+.|+.
T Consensus 214 ~~C~~Cg~~~~C~~C-~~~l~~h~~~~~l~Ch~Cg~~~---------------~~~~~Cp~C~s 261 (505)
T TIGR00595 214 LLCRSCGYILCCPNC-DVSLTYHKKEGKLRCHYCGYQE---------------PIPKTCPQCGS 261 (505)
T ss_pred eEhhhCcCccCCCCC-CCceEEecCCCeEEcCCCcCcC---------------CCCCCCCCCCC
Confidence 356666665432210 1122233344556777777654 34567777765
No 176
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.02 E-value=14 Score=35.04 Aligned_cols=8 Identities=25% Similarity=0.721 Sum_probs=4.7
Q ss_pred cCCCCCCC
Q psy7185 173 VCDVCSKG 180 (311)
Q Consensus 173 ~C~~C~~~ 180 (311)
.|..||..
T Consensus 215 ~C~~Cg~~ 222 (505)
T TIGR00595 215 LCRSCGYI 222 (505)
T ss_pred EhhhCcCc
Confidence 56666554
No 177
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=32.83 E-value=12 Score=26.48 Aligned_cols=40 Identities=20% Similarity=0.444 Sum_probs=23.5
Q ss_pred CCCccccCcCccccCChhhHHHHHHhhcCCCCccCCCCCCCCCC
Q psy7185 140 SKTMLPCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFST 183 (311)
Q Consensus 140 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 183 (311)
..+.|.|+.||..-...-.+..- .......|..||..|..
T Consensus 19 L~k~FtCp~Cghe~vs~ctvkk~----~~~g~~~Cg~CGls~e~ 58 (104)
T COG4888 19 LPKTFTCPRCGHEKVSSCTVKKT----VNIGTAVCGNCGLSFEC 58 (104)
T ss_pred CCceEecCccCCeeeeEEEEEec----CceeEEEcccCcceEEE
Confidence 45679999998765443332211 12223568888877643
No 178
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=32.68 E-value=35 Score=21.17 Aligned_cols=8 Identities=50% Similarity=1.315 Sum_probs=3.0
Q ss_pred cCCCCCCc
Q psy7185 229 KCGACGKS 236 (311)
Q Consensus 229 ~C~~C~~~ 236 (311)
+|+.||..
T Consensus 30 ~C~~Cgh~ 37 (55)
T PF14311_consen 30 KCPKCGHE 37 (55)
T ss_pred ECCCCCCe
Confidence 33333333
No 179
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=32.62 E-value=24 Score=26.03 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=7.8
Q ss_pred CccCCCCCCCCCC
Q psy7185 171 PHVCDVCSKGFST 183 (311)
Q Consensus 171 ~~~C~~C~~~f~~ 183 (311)
.+.|..|+..|..
T Consensus 71 ~~~C~~Cg~~~~~ 83 (117)
T PRK00564 71 ELECKDCSHVFKP 83 (117)
T ss_pred EEEhhhCCCcccc
Confidence 3567777766543
No 180
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=32.41 E-value=19 Score=25.18 Aligned_cols=12 Identities=33% Similarity=0.390 Sum_probs=6.3
Q ss_pred CCccCCCCCCcc
Q psy7185 198 RPHVCPICFKTF 209 (311)
Q Consensus 198 ~~~~C~~C~~~f 209 (311)
..|.|..|++.|
T Consensus 53 GIW~C~~C~~~~ 64 (90)
T PTZ00255 53 GIWRCKGCKKTV 64 (90)
T ss_pred EEEEcCCCCCEE
Confidence 345555555554
No 181
>KOG0978|consensus
Probab=32.23 E-value=20 Score=34.91 Aligned_cols=15 Identities=33% Similarity=0.917 Sum_probs=10.9
Q ss_pred CCccccCcCccccCC
Q psy7185 141 KTMLPCTVCGKSFDR 155 (311)
Q Consensus 141 ~~~~~C~~C~~~f~~ 155 (311)
+.+.+|+.|+..+..
T Consensus 641 K~~LkCs~Cn~R~Kd 655 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKD 655 (698)
T ss_pred HhceeCCCccCchhh
Confidence 466889999966544
No 182
>KOG2636|consensus
Probab=32.14 E-value=31 Score=31.56 Aligned_cols=28 Identities=18% Similarity=0.409 Sum_probs=23.0
Q ss_pred HHcCCCCceeccccc-ccccChhhHHHHh
Q psy7185 281 YSHSGSWPYKCTVCI-KGFAKSSNLKNHM 308 (311)
Q Consensus 281 ~~h~~~~~~~C~~C~-~~F~~~~~L~~H~ 308 (311)
+.|.=...|.|.+|| +++.-+..+.+|.
T Consensus 394 KLHGL~~ey~CEICGNy~Y~GrkaF~RHF 422 (497)
T KOG2636|consen 394 KLHGLDIEYNCEICGNYVYKGRKAFDRHF 422 (497)
T ss_pred hhcCCCcccceeeccCccccCcHHHHHHh
Confidence 355556779999999 9999999999885
No 183
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=31.96 E-value=5.8 Score=23.03 Aligned_cols=8 Identities=38% Similarity=0.978 Sum_probs=3.5
Q ss_pred ccCCCCCC
Q psy7185 172 HVCDVCSK 179 (311)
Q Consensus 172 ~~C~~C~~ 179 (311)
|.|..|+.
T Consensus 29 y~C~~C~~ 36 (40)
T smart00440 29 YVCTKCGH 36 (40)
T ss_pred EEeCCCCC
Confidence 44444443
No 184
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=31.80 E-value=13 Score=28.53 Aligned_cols=14 Identities=29% Similarity=0.591 Sum_probs=7.8
Q ss_pred ccCCCCCCCCCChH
Q psy7185 172 HVCDVCSKGFSTSS 185 (311)
Q Consensus 172 ~~C~~C~~~f~~~~ 185 (311)
-.|..|+..|.+..
T Consensus 29 ReC~~C~~RFTTfE 42 (156)
T COG1327 29 RECLECGERFTTFE 42 (156)
T ss_pred hcccccccccchhh
Confidence 34666666665543
No 185
>KOG3408|consensus
Probab=31.23 E-value=28 Score=25.65 Aligned_cols=28 Identities=29% Similarity=0.495 Sum_probs=23.8
Q ss_pred CCCCCccccCcCccccCChhhHHHHHHh
Q psy7185 138 SPSKTMLPCTVCGKSFDRPSLLKRHTRT 165 (311)
Q Consensus 138 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~ 165 (311)
-++.+.|-|-.|.+-|.+...|..|.+.
T Consensus 52 lPG~GqfyCi~CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 52 LPGGGQFYCIECARYFIDAKALKTHFKT 79 (129)
T ss_pred CCCCceeehhhhhhhhcchHHHHHHHhc
Confidence 3455789999999999999999999764
No 186
>KOG0717|consensus
Probab=31.05 E-value=27 Score=32.14 Aligned_cols=22 Identities=41% Similarity=0.705 Sum_probs=19.0
Q ss_pred eecccccccccChhhHHHHhhh
Q psy7185 289 YKCTVCIKGFAKSSNLKNHMTI 310 (311)
Q Consensus 289 ~~C~~C~~~F~~~~~L~~H~r~ 310 (311)
+-|.+|+++|.+...|..|..+
T Consensus 293 lyC~vCnKsFKseKq~kNHEnS 314 (508)
T KOG0717|consen 293 LYCVVCNKSFKSEKQLKNHENS 314 (508)
T ss_pred eEEeeccccccchHHHHhhHHH
Confidence 7799999999999999998653
No 187
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=30.93 E-value=47 Score=25.01 Aligned_cols=29 Identities=38% Similarity=0.534 Sum_probs=22.5
Q ss_pred CCCCccccCcCccccCChhhHHHHHHhhcCCC
Q psy7185 139 PSKTMLPCTVCGKSFDRPSLLKRHTRTHTGEK 170 (311)
Q Consensus 139 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~ 170 (311)
....-..|-++|+.|. +|++|+.+|.+-.
T Consensus 72 VtpD~IicLEDGkkfK---SLKRHL~t~~gmT 100 (148)
T COG4957 72 VTPDYIICLEDGKKFK---SLKRHLTTHYGLT 100 (148)
T ss_pred cCCCeEEEeccCcchH---HHHHHHhcccCCC
Confidence 3344578999999995 4999999987743
No 188
>KOG0320|consensus
Probab=30.73 E-value=18 Score=28.74 Aligned_cols=10 Identities=40% Similarity=0.919 Sum_probs=5.2
Q ss_pred eccccccccc
Q psy7185 290 KCTVCIKGFA 299 (311)
Q Consensus 290 ~C~~C~~~F~ 299 (311)
+|+.|++.-+
T Consensus 169 ~CP~C~kkIt 178 (187)
T KOG0320|consen 169 KCPTCRKKIT 178 (187)
T ss_pred CCCCcccccc
Confidence 5666655433
No 189
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=30.06 E-value=17 Score=36.07 Aligned_cols=9 Identities=33% Similarity=0.815 Sum_probs=0.0
Q ss_pred ccCCCCCCC
Q psy7185 172 HVCDVCSKG 180 (311)
Q Consensus 172 ~~C~~C~~~ 180 (311)
+.|+.|+..
T Consensus 656 r~Cp~Cg~~ 664 (900)
T PF03833_consen 656 RRCPKCGKE 664 (900)
T ss_dssp ---------
T ss_pred ccCcccCCc
Confidence 456666653
No 190
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=29.78 E-value=54 Score=20.59 Aligned_cols=11 Identities=27% Similarity=0.742 Sum_probs=5.9
Q ss_pred CCCcCCCCCCc
Q psy7185 226 KPHKCGACGKS 236 (311)
Q Consensus 226 ~~~~C~~C~~~ 236 (311)
..|.|+.||..
T Consensus 13 v~~~Cp~cGip 23 (55)
T PF13824_consen 13 VNFECPDCGIP 23 (55)
T ss_pred cCCcCCCCCCc
Confidence 34556555554
No 191
>COG1773 Rubredoxin [Energy production and conversion]
Probab=29.64 E-value=25 Score=22.05 Aligned_cols=12 Identities=25% Similarity=0.797 Sum_probs=8.7
Q ss_pred ceeccccccccc
Q psy7185 288 PYKCTVCIKGFA 299 (311)
Q Consensus 288 ~~~C~~C~~~F~ 299 (311)
.|+|.+||..|.
T Consensus 3 ~~~C~~CG~vYd 14 (55)
T COG1773 3 RWRCSVCGYVYD 14 (55)
T ss_pred ceEecCCceEec
Confidence 577888887764
No 192
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=29.59 E-value=59 Score=25.95 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=7.8
Q ss_pred CCCCccCCCCCCCCC
Q psy7185 168 GEKPHVCDVCSKGFS 182 (311)
Q Consensus 168 ~~~~~~C~~C~~~f~ 182 (311)
...-|.|+.|...|.
T Consensus 110 ~~~~y~C~~~~~r~s 124 (176)
T COG1675 110 ENNYYVCPNCHVKYS 124 (176)
T ss_pred cCCceeCCCCCCccc
Confidence 344466655555443
No 193
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=29.55 E-value=28 Score=34.31 Aligned_cols=12 Identities=33% Similarity=1.090 Sum_probs=7.1
Q ss_pred CcCCCCCCcCCC
Q psy7185 228 HKCGACGKSFPT 239 (311)
Q Consensus 228 ~~C~~C~~~f~~ 239 (311)
-.|..|++.|..
T Consensus 461 dtC~~C~kkFfS 472 (1374)
T PTZ00303 461 DSCPSCGRAFIS 472 (1374)
T ss_pred CcccCcCCcccc
Confidence 346666666644
No 194
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.16 E-value=21 Score=21.50 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=10.5
Q ss_pred ecccccccccChhhHH
Q psy7185 290 KCTVCIKGFAKSSNLK 305 (311)
Q Consensus 290 ~C~~C~~~F~~~~~L~ 305 (311)
.|++|++-|+.+..+.
T Consensus 14 ICpvCqRPFsWRkKW~ 29 (54)
T COG4338 14 ICPVCQRPFSWRKKWA 29 (54)
T ss_pred hhhhhcCchHHHHHHH
Confidence 4777777777655443
No 195
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=28.43 E-value=19 Score=25.16 Aligned_cols=11 Identities=27% Similarity=0.549 Sum_probs=5.7
Q ss_pred CccCCCCCCcc
Q psy7185 199 PHVCPICFKTF 209 (311)
Q Consensus 199 ~~~C~~C~~~f 209 (311)
.|.|..|++.|
T Consensus 53 IW~C~~C~~~~ 63 (91)
T TIGR00280 53 IWTCRKCGAKF 63 (91)
T ss_pred EEEcCCCCCEE
Confidence 35555555544
No 196
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=28.36 E-value=24 Score=25.90 Aligned_cols=12 Identities=17% Similarity=0.573 Sum_probs=7.2
Q ss_pred CccCCCCCCCCC
Q psy7185 171 PHVCDVCSKGFS 182 (311)
Q Consensus 171 ~~~C~~C~~~f~ 182 (311)
.+.|..|+..|.
T Consensus 70 ~~~C~~Cg~~~~ 81 (114)
T PRK03681 70 ECWCETCQQYVT 81 (114)
T ss_pred EEEcccCCCeee
Confidence 356777776553
No 197
>KOG2071|consensus
Probab=28.25 E-value=31 Score=32.76 Aligned_cols=27 Identities=33% Similarity=0.591 Sum_probs=21.4
Q ss_pred CCCceecccccccccChhhHHHHhhhC
Q psy7185 285 GSWPYKCTVCIKGFAKSSNLKNHMTIH 311 (311)
Q Consensus 285 ~~~~~~C~~C~~~F~~~~~L~~H~r~H 311 (311)
...|-+|..||.+|.......+||-.|
T Consensus 415 ~~~pnqC~~CG~R~~~~ee~sk~md~H 441 (579)
T KOG2071|consen 415 KDSPNQCKSCGLRFDDSEERSKHMDIH 441 (579)
T ss_pred cCCcchhcccccccccchhhhhHhhhh
Confidence 356688999999999888887777665
No 198
>KOG3362|consensus
Probab=28.24 E-value=31 Score=26.28 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=14.6
Q ss_pred ceecccccccccChhhHHHHhh
Q psy7185 288 PYKCTVCIKGFAKSSNLKNHMT 309 (311)
Q Consensus 288 ~~~C~~C~~~F~~~~~L~~H~r 309 (311)
+|.|.-||-.+-+..-|..|..
T Consensus 129 ~ysC~~CG~kyCsv~C~~~Hne 150 (156)
T KOG3362|consen 129 KYSCVNCGTKYCSVRCLKTHNE 150 (156)
T ss_pred hhHHHhcCCceeechhhhhccc
Confidence 3667777777777666666653
No 199
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=27.95 E-value=12 Score=19.83 Aligned_cols=8 Identities=50% Similarity=0.999 Sum_probs=3.4
Q ss_pred CCCCCCcc
Q psy7185 202 CPICFKTF 209 (311)
Q Consensus 202 C~~C~~~f 209 (311)
|-.|++.|
T Consensus 3 CiDC~~~F 10 (28)
T PF08790_consen 3 CIDCSKDF 10 (28)
T ss_dssp ETTTTEEE
T ss_pred eecCCCCc
Confidence 44444444
No 200
>PRK14873 primosome assembly protein PriA; Provisional
Probab=27.60 E-value=43 Score=32.92 Aligned_cols=11 Identities=27% Similarity=0.691 Sum_probs=6.8
Q ss_pred cccCcCccccC
Q psy7185 144 LPCTVCGKSFD 154 (311)
Q Consensus 144 ~~C~~C~~~f~ 154 (311)
..|..||..+.
T Consensus 384 l~C~~Cg~~~~ 394 (665)
T PRK14873 384 LACARCRTPAR 394 (665)
T ss_pred eEhhhCcCeeE
Confidence 46777776543
No 201
>PRK05580 primosome assembly protein PriA; Validated
Probab=27.49 E-value=52 Score=32.54 Aligned_cols=25 Identities=28% Similarity=0.602 Sum_probs=14.6
Q ss_pred CCCccCCCCCCCCCChHHHHHHHHHhcCCCCccCCCCCCc
Q psy7185 169 EKPHVCDVCSKGFSTSSSLNTHRRIHSGERPHVCPICFKT 208 (311)
Q Consensus 169 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 208 (311)
.....|..||... ..+..|+.|+..
T Consensus 406 ~~~l~Ch~Cg~~~---------------~~~~~Cp~Cg~~ 430 (679)
T PRK05580 406 QRRLRCHHCGYQE---------------PIPKACPECGST 430 (679)
T ss_pred CCeEECCCCcCCC---------------CCCCCCCCCcCC
Confidence 4446677776543 345667777543
No 202
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=27.38 E-value=36 Score=17.44 Aligned_cols=7 Identities=43% Similarity=1.141 Sum_probs=3.5
Q ss_pred cCCCCCC
Q psy7185 229 KCGACGK 235 (311)
Q Consensus 229 ~C~~C~~ 235 (311)
.|+.||.
T Consensus 4 ~Cp~Cg~ 10 (26)
T PF13248_consen 4 FCPNCGA 10 (26)
T ss_pred CCcccCC
Confidence 3555554
No 203
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=27.00 E-value=25 Score=21.76 Aligned_cols=12 Identities=17% Similarity=0.606 Sum_probs=6.5
Q ss_pred ecccccccccCh
Q psy7185 290 KCTVCIKGFAKS 301 (311)
Q Consensus 290 ~C~~C~~~F~~~ 301 (311)
.||+|++.|...
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 899999999753
No 204
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=26.92 E-value=34 Score=22.21 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=9.6
Q ss_pred CcCccCCCCCChHHHHHHHHHcCCCCceeccccccccc
Q psy7185 262 SVGACGKSFPTPGNLRTHSYSHSGSWPYKCTVCIKGFA 299 (311)
Q Consensus 262 ~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~F~ 299 (311)
.|..|++.|.- -.+.+.|..||..|-
T Consensus 11 ~C~~C~~~F~~------------~~rrhhCr~CG~~vC 36 (69)
T PF01363_consen 11 NCMICGKKFSL------------FRRRHHCRNCGRVVC 36 (69)
T ss_dssp B-TTT--B-BS------------SS-EEE-TTT--EEE
T ss_pred cCcCcCCcCCC------------ceeeEccCCCCCEEC
Confidence 36677777742 134456666666553
No 205
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=26.89 E-value=44 Score=20.21 Aligned_cols=8 Identities=38% Similarity=1.011 Sum_probs=3.6
Q ss_pred CcCCCCCC
Q psy7185 228 HKCGACGK 235 (311)
Q Consensus 228 ~~C~~C~~ 235 (311)
|.|+.||.
T Consensus 21 ~vC~~Cg~ 28 (52)
T smart00661 21 FVCRKCGY 28 (52)
T ss_pred EECCcCCC
Confidence 44444443
No 206
>KOG1280|consensus
Probab=26.58 E-value=67 Score=28.43 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=9.4
Q ss_pred cccCcCccccCChhhHHHHHH
Q psy7185 144 LPCTVCGKSFDRPSLLKRHTR 164 (311)
Q Consensus 144 ~~C~~C~~~f~~~~~l~~H~~ 164 (311)
|.|++|+..=.+...|..|..
T Consensus 80 ftCPyC~~~Gfte~~f~~Hv~ 100 (381)
T KOG1280|consen 80 FTCPYCGIMGFTERQFGTHVL 100 (381)
T ss_pred ccCCcccccccchhHHHHHhh
Confidence 444444444334444444443
No 207
>PF12773 DZR: Double zinc ribbon
Probab=26.09 E-value=40 Score=20.26 Aligned_cols=10 Identities=40% Similarity=1.132 Sum_probs=5.1
Q ss_pred cCCCCCCcCC
Q psy7185 229 KCGACGKSFP 238 (311)
Q Consensus 229 ~C~~C~~~f~ 238 (311)
.|+.||....
T Consensus 14 fC~~CG~~l~ 23 (50)
T PF12773_consen 14 FCPHCGTPLP 23 (50)
T ss_pred CChhhcCChh
Confidence 4555555444
No 208
>PRK14873 primosome assembly protein PriA; Provisional
Probab=25.60 E-value=44 Score=32.89 Aligned_cols=9 Identities=22% Similarity=0.623 Sum_probs=6.0
Q ss_pred cCCCCCCCC
Q psy7185 173 VCDVCSKGF 181 (311)
Q Consensus 173 ~C~~C~~~f 181 (311)
.|..||..+
T Consensus 385 ~C~~Cg~~~ 393 (665)
T PRK14873 385 ACARCRTPA 393 (665)
T ss_pred EhhhCcCee
Confidence 677777653
No 209
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=25.41 E-value=60 Score=20.00 Aligned_cols=10 Identities=50% Similarity=1.424 Sum_probs=4.6
Q ss_pred CcCCCCCCcC
Q psy7185 228 HKCGACGKSF 237 (311)
Q Consensus 228 ~~C~~C~~~f 237 (311)
+.|..||+.|
T Consensus 19 ~~Cr~Cg~~~ 28 (57)
T cd00065 19 HHCRNCGRIF 28 (57)
T ss_pred cccCcCcCCc
Confidence 4444444443
No 210
>KOG2907|consensus
Probab=24.79 E-value=38 Score=24.61 Aligned_cols=12 Identities=33% Similarity=0.910 Sum_probs=9.0
Q ss_pred eecccccccccC
Q psy7185 289 YKCTVCIKGFAK 300 (311)
Q Consensus 289 ~~C~~C~~~F~~ 300 (311)
|.|+.|++.|+.
T Consensus 103 YTC~kC~~k~~e 114 (116)
T KOG2907|consen 103 YTCPKCKYKFTE 114 (116)
T ss_pred EEcCccceeeec
Confidence 778888877764
No 211
>KOG4377|consensus
Probab=24.77 E-value=31 Score=31.16 Aligned_cols=68 Identities=21% Similarity=0.302 Sum_probs=42.1
Q ss_pred CccccC--cCccccCChhhHHHHHHhhcCC------------CCccCC--CCCCCCCChHHHHHHHHHhcCC-------C
Q psy7185 142 TMLPCT--VCGKSFDRPSLLKRHTRTHTGE------------KPHVCD--VCSKGFSTSSSLNTHRRIHSGE-------R 198 (311)
Q Consensus 142 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~------------~~~~C~--~C~~~f~~~~~l~~H~~~h~~~-------~ 198 (311)
.-|.|. .|+..+..+..+.+|...|-.. ..|.|. .|.+ +-++...|-.-|+.. -
T Consensus 270 Ehyhcl~e~C~ykr~~k~DvirH~~~hkkrdnsL~dgf~rfs~syhC~~~~C~k---sTsdV~~h~nFht~~~n~Gfrrt 346 (480)
T KOG4377|consen 270 EHYHCLNEYCFYKRGQKNDVIRHVEIHKKRDNSLIDGFHRFSNSYHCTGQICEK---STSDVLLHDNFHTDKRNNGFRRT 346 (480)
T ss_pred hhhcccCccccccccchhhhHHHHHHHhhcccccccchhhcCccchhhhcccCc---ccccccccCccccccccCceecc
Confidence 446774 5988877789999998887432 225664 4877 345555665555321 1
Q ss_pred CccCCCCCCccCCc
Q psy7185 199 PHVCPICFKTFTAS 212 (311)
Q Consensus 199 ~~~C~~C~~~f~~~ 212 (311)
-|.|..|+-++..+
T Consensus 347 hfhC~r~gCTdtfK 360 (480)
T KOG4377|consen 347 HFHCQRIGCTDTFK 360 (480)
T ss_pred eeEEeccCCccccc
Confidence 27788887444433
No 212
>PF10276 zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a short conserved zinc-finger domain. It contains the sequence motif Cx8Hx14Cx2C. ; PDB: 2JVM_A 2JRR_A 2JZ8_A.
Probab=24.76 E-value=31 Score=20.07 Aligned_cols=12 Identities=25% Similarity=0.625 Sum_probs=9.1
Q ss_pred Cceecccccccc
Q psy7185 287 WPYKCTVCIKGF 298 (311)
Q Consensus 287 ~~~~C~~C~~~F 298 (311)
++-.|++|+..|
T Consensus 28 ~~~~CpYCg~~y 39 (40)
T PF10276_consen 28 GPVVCPYCGTRY 39 (40)
T ss_dssp CEEEETTTTEEE
T ss_pred CeEECCCCCCEE
Confidence 356788888877
No 213
>PTZ00448 hypothetical protein; Provisional
Probab=24.72 E-value=43 Score=29.96 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=19.7
Q ss_pred ceecccccccccChhhHHHHhhh
Q psy7185 288 PYKCTVCIKGFAKSSNLKNHMTI 310 (311)
Q Consensus 288 ~~~C~~C~~~F~~~~~L~~H~r~ 310 (311)
.|.|..|+..|.+....+.|+++
T Consensus 314 ~~tC~~C~v~F~~~~~qR~H~KS 336 (373)
T PTZ00448 314 MLLCRKCNIQLMDHNAFKQHYRS 336 (373)
T ss_pred CccccccccccCCHHHHHHHhhh
Confidence 58899999999888888888875
No 214
>PF12907 zf-met2: Zinc-binding
Probab=23.86 E-value=47 Score=19.32 Aligned_cols=6 Identities=33% Similarity=0.612 Sum_probs=2.3
Q ss_pred HHHHHH
Q psy7185 243 LRTHSY 248 (311)
Q Consensus 243 l~~H~~ 248 (311)
|..|..
T Consensus 20 L~eH~e 25 (40)
T PF12907_consen 20 LKEHAE 25 (40)
T ss_pred HHHHHH
Confidence 444433
No 215
>PRK05978 hypothetical protein; Provisional
Probab=23.58 E-value=33 Score=26.52 Aligned_cols=9 Identities=44% Similarity=1.102 Sum_probs=5.2
Q ss_pred cCccCCCCC
Q psy7185 263 VGACGKSFP 271 (311)
Q Consensus 263 C~~C~~~f~ 271 (311)
|+.||..|.
T Consensus 55 C~~CG~~~~ 63 (148)
T PRK05978 55 CAACGEDFT 63 (148)
T ss_pred ccccCCccc
Confidence 556665554
No 216
>KOG0978|consensus
Probab=23.45 E-value=29 Score=33.88 Aligned_cols=14 Identities=29% Similarity=0.733 Sum_probs=7.3
Q ss_pred CCcCCCCCCcCCCh
Q psy7185 227 PHKCGACGKSFPTP 240 (311)
Q Consensus 227 ~~~C~~C~~~f~~~ 240 (311)
.-+||.|+..|...
T Consensus 678 qRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 678 QRKCPKCNAAFGAN 691 (698)
T ss_pred cCCCCCCCCCCCcc
Confidence 34555555555443
No 217
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=23.33 E-value=38 Score=20.45 Aligned_cols=12 Identities=33% Similarity=0.836 Sum_probs=9.0
Q ss_pred eecccccccccC
Q psy7185 289 YKCTVCIKGFAK 300 (311)
Q Consensus 289 ~~C~~C~~~F~~ 300 (311)
|+|.+|++.|.-
T Consensus 2 y~C~~CgyvYd~ 13 (47)
T PF00301_consen 2 YQCPVCGYVYDP 13 (47)
T ss_dssp EEETTTSBEEET
T ss_pred cCCCCCCEEEcC
Confidence 788888877653
No 218
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=23.11 E-value=38 Score=20.68 Aligned_cols=16 Identities=19% Similarity=0.355 Sum_probs=12.4
Q ss_pred CCceecccccccccCh
Q psy7185 286 SWPYKCTVCIKGFAKS 301 (311)
Q Consensus 286 ~~~~~C~~C~~~F~~~ 301 (311)
++.+.|..||..|...
T Consensus 2 Dk~l~C~dCg~~FvfT 17 (49)
T PF13451_consen 2 DKTLTCKDCGAEFVFT 17 (49)
T ss_pred CeeEEcccCCCeEEEe
Confidence 4678899999888654
No 219
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=23.07 E-value=26 Score=24.50 Aligned_cols=11 Identities=27% Similarity=0.492 Sum_probs=5.8
Q ss_pred CccCCCCCCcc
Q psy7185 199 PHVCPICFKTF 209 (311)
Q Consensus 199 ~~~C~~C~~~f 209 (311)
.|.|..|++.|
T Consensus 54 IW~C~~C~~~~ 64 (90)
T PRK03976 54 IWECRKCGAKF 64 (90)
T ss_pred EEEcCCCCCEE
Confidence 35555555544
No 220
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=23.06 E-value=34 Score=24.42 Aligned_cols=36 Identities=19% Similarity=0.381 Sum_probs=20.0
Q ss_pred CCccccCcCccccCChhhHHHHHHhhcCCCCccCCCCCCCCCC
Q psy7185 141 KTMLPCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFST 183 (311)
Q Consensus 141 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 183 (311)
...|.|+.|+.. .-.-.+.. +.....|..||..+..
T Consensus 19 pt~f~CP~Cge~-~v~v~~~k------~~~h~~C~~CG~y~~~ 54 (99)
T PRK14892 19 PKIFECPRCGKV-SISVKIKK------NIAIITCGNCGLYTEF 54 (99)
T ss_pred CcEeECCCCCCe-EeeeecCC------CcceEECCCCCCccCE
Confidence 466889999832 11111111 2333678888877654
No 221
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=22.70 E-value=27 Score=25.53 Aligned_cols=12 Identities=25% Similarity=0.681 Sum_probs=6.3
Q ss_pred ccCCCCCCCCCC
Q psy7185 172 HVCDVCSKGFST 183 (311)
Q Consensus 172 ~~C~~C~~~f~~ 183 (311)
+.|..|+..|.-
T Consensus 71 ~~C~~Cg~~~~~ 82 (113)
T PF01155_consen 71 ARCRDCGHEFEP 82 (113)
T ss_dssp EEETTTS-EEEC
T ss_pred EECCCCCCEEec
Confidence 556666666543
No 222
>KOG0717|consensus
Probab=22.38 E-value=44 Score=30.86 Aligned_cols=22 Identities=36% Similarity=0.649 Sum_probs=19.5
Q ss_pred CcCCCCCCcCCChhHHHHHHHh
Q psy7185 228 HKCGACGKSFPTPGNLRTHSYS 249 (311)
Q Consensus 228 ~~C~~C~~~f~~~~~l~~H~~~ 249 (311)
+.|..|.++|.+...|..|..+
T Consensus 293 lyC~vCnKsFKseKq~kNHEnS 314 (508)
T KOG0717|consen 293 LYCVVCNKSFKSEKQLKNHENS 314 (508)
T ss_pred eEEeeccccccchHHHHhhHHH
Confidence 7899999999999999999753
No 223
>KOG2636|consensus
Probab=22.09 E-value=66 Score=29.52 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=24.3
Q ss_pred HHhcCCCCCCcCCCCC-CcCCChhHHHHHHH
Q psy7185 219 RITHVKDKPHKCGACG-KSFPTPGNLRTHSY 248 (311)
Q Consensus 219 ~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~ 248 (311)
.+.|.-...|.|.+|| +++.-+..+.+|..
T Consensus 393 yKLHGL~~ey~CEICGNy~Y~GrkaF~RHF~ 423 (497)
T KOG2636|consen 393 YKLHGLDIEYNCEICGNYVYKGRKAFDRHFN 423 (497)
T ss_pred HhhcCCCcccceeeccCccccCcHHHHHHhH
Confidence 3456666779999999 88999999999965
No 224
>PRK12496 hypothetical protein; Provisional
Probab=22.09 E-value=69 Score=25.23 Aligned_cols=10 Identities=40% Similarity=1.049 Sum_probs=4.8
Q ss_pred ccCCCCCCCC
Q psy7185 172 HVCDVCSKGF 181 (311)
Q Consensus 172 ~~C~~C~~~f 181 (311)
|.|.-|++.|
T Consensus 128 ~~C~gC~~~~ 137 (164)
T PRK12496 128 KVCKGCKKKY 137 (164)
T ss_pred EECCCCCccc
Confidence 3455555444
No 225
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=21.41 E-value=75 Score=23.98 Aligned_cols=14 Identities=21% Similarity=0.551 Sum_probs=7.8
Q ss_pred CCCccCCCCCCCCC
Q psy7185 169 EKPHVCDVCSKGFS 182 (311)
Q Consensus 169 ~~~~~C~~C~~~f~ 182 (311)
.+.|+|.+|..+..
T Consensus 78 ~~lYeCnIC~etS~ 91 (140)
T PF05290_consen 78 PKLYECNICKETSA 91 (140)
T ss_pred CCceeccCcccccc
Confidence 35566666655543
No 227
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=21.32 E-value=38 Score=20.79 Aligned_cols=12 Identities=25% Similarity=0.777 Sum_probs=8.8
Q ss_pred eecccccccccC
Q psy7185 289 YKCTVCIKGFAK 300 (311)
Q Consensus 289 ~~C~~C~~~F~~ 300 (311)
|+|.+||+.|.-
T Consensus 2 y~C~~CgyiYd~ 13 (50)
T cd00730 2 YECRICGYIYDP 13 (50)
T ss_pred cCCCCCCeEECC
Confidence 678888877753
No 228
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=21.17 E-value=71 Score=18.22 Aligned_cols=11 Identities=36% Similarity=0.781 Sum_probs=3.8
Q ss_pred ceecccccccc
Q psy7185 288 PYKCTVCIKGF 298 (311)
Q Consensus 288 ~~~C~~C~~~F 298 (311)
.|-|++|+..|
T Consensus 3 ryyCdyC~~~~ 13 (38)
T PF06220_consen 3 RYYCDYCKKYL 13 (38)
T ss_dssp S-B-TTT--B-
T ss_pred Ceeccccccee
Confidence 45677777666
No 229
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=20.90 E-value=59 Score=18.72 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=9.3
Q ss_pred ceecccccccccChhhHH
Q psy7185 288 PYKCTVCIKGFAKSSNLK 305 (311)
Q Consensus 288 ~~~C~~C~~~F~~~~~L~ 305 (311)
-+.|+.|+-.|-....|.
T Consensus 19 id~C~~C~G~W~d~~el~ 36 (41)
T PF13453_consen 19 IDVCPSCGGIWFDAGELE 36 (41)
T ss_pred EEECCCCCeEEccHHHHH
Confidence 345666655555544443
No 230
>PLN02748 tRNA dimethylallyltransferase
Probab=20.75 E-value=56 Score=30.61 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=20.8
Q ss_pred Cceecccccc-cccChhhHHHHhhh
Q psy7185 287 WPYKCTVCIK-GFAKSSNLKNHMTI 310 (311)
Q Consensus 287 ~~~~C~~C~~-~F~~~~~L~~H~r~ 310 (311)
+.|.|++|++ .+.....+..|++.
T Consensus 417 ~~~~Ce~C~~~~~~G~~eW~~Hlks 441 (468)
T PLN02748 417 TQYVCEACGNKVLRGAHEWEQHKQG 441 (468)
T ss_pred ccccccCCCCcccCCHHHHHHHhcc
Confidence 5689999997 79999999999875
No 231
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=20.68 E-value=43 Score=24.99 Aligned_cols=11 Identities=18% Similarity=0.253 Sum_probs=6.6
Q ss_pred ccCCCCCCCCCC
Q psy7185 172 HVCDVCSKGFST 183 (311)
Q Consensus 172 ~~C~~C~~~f~~ 183 (311)
+.| .|+..|..
T Consensus 71 ~~C-~Cg~~~~~ 81 (124)
T PRK00762 71 IEC-ECGYEGVV 81 (124)
T ss_pred EEe-eCcCcccc
Confidence 567 67666543
No 232
>KOG3214|consensus
Probab=20.67 E-value=28 Score=24.65 Aligned_cols=44 Identities=20% Similarity=0.467 Sum_probs=24.4
Q ss_pred CCCCCccccCcCccccCChhhHHHHHHhhcCCCCccCCCCCCCCCChH
Q psy7185 138 SPSKTMLPCTVCGKSFDRPSLLKRHTRTHTGEKPHVCDVCSKGFSTSS 185 (311)
Q Consensus 138 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 185 (311)
.+....|.|+.|+-.-.-.-.| ..-+......|.+|+..|.+..
T Consensus 18 ~~ldt~FnClfcnHek~v~~~~----Dk~~~iG~~sC~iC~esFqt~i 61 (109)
T KOG3214|consen 18 EPLDTQFNCLFCNHEKSVSCTL----DKKHNIGKASCRICEESFQTTI 61 (109)
T ss_pred cchheeeccCccccccceeeee----hhhcCcceeeeeehhhhhccch
Confidence 3344668999997543221222 1122333456888888886653
No 233
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=20.37 E-value=67 Score=28.49 Aligned_cols=28 Identities=14% Similarity=0.373 Sum_probs=22.1
Q ss_pred HHcCCCCceeccccc-ccccChhhHHHHh
Q psy7185 281 YSHSGSWPYKCTVCI-KGFAKSSNLKNHM 308 (311)
Q Consensus 281 ~~h~~~~~~~C~~C~-~~F~~~~~L~~H~ 308 (311)
+.|.=.+-|.|.+|| +.+.-+..+.+|.
T Consensus 367 klhgLd~ef~CEICgNyvy~GR~~FdrHF 395 (470)
T COG5188 367 KLHGLDIEFECEICGNYVYYGRDRFDRHF 395 (470)
T ss_pred HhcCCCcceeeeecccccccchHHHHhhh
Confidence 356556779999999 8888888888874
No 234
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=20.29 E-value=17 Score=35.39 Aligned_cols=11 Identities=45% Similarity=0.942 Sum_probs=5.7
Q ss_pred cCcCccccCCh
Q psy7185 146 CTVCGKSFDRP 156 (311)
Q Consensus 146 C~~C~~~f~~~ 156 (311)
|..||-.|+-.
T Consensus 126 CT~CGPRfTIi 136 (750)
T COG0068 126 CTNCGPRFTII 136 (750)
T ss_pred cCCCCcceeee
Confidence 55555555443
Done!