Query psy7187
Match_columns 214
No_of_seqs 129 out of 1352
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 20:22:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7187.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7187hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1241 MCM2 Predicted ATPase 100.0 1.3E-57 2.8E-62 405.9 16.9 213 1-214 374-592 (682)
2 KOG0480|consensus 100.0 1.6E-57 3.4E-62 394.0 16.2 210 1-214 433-643 (764)
3 PF00493 MCM: MCM2/3/5 family 100.0 5.3E-58 1.1E-62 386.4 5.4 211 1-214 112-326 (331)
4 KOG0481|consensus 100.0 6.2E-56 1.3E-60 376.3 13.4 214 1-214 419-639 (729)
5 KOG0479|consensus 100.0 1.8E-54 3.9E-59 371.7 17.0 212 1-213 389-641 (818)
6 KOG0482|consensus 100.0 3E-55 6.5E-60 371.8 9.8 208 1-214 430-638 (721)
7 PTZ00111 DNA replication licen 100.0 4.2E-51 9.2E-56 371.7 20.1 214 1-214 548-804 (915)
8 KOG0477|consensus 100.0 2.5E-51 5.4E-56 354.5 10.8 209 1-213 537-756 (854)
9 KOG0478|consensus 100.0 1.2E-50 2.6E-55 353.5 14.5 206 1-213 517-723 (804)
10 smart00350 MCM minichromosome 100.0 2.4E-49 5.2E-54 350.8 21.0 213 1-214 291-504 (509)
11 COG0606 Predicted ATPase with 100.0 9.2E-36 2E-40 253.7 14.3 189 2-213 275-484 (490)
12 TIGR00368 Mg chelatase-related 100.0 7.6E-35 1.6E-39 256.0 17.4 189 2-213 287-498 (499)
13 PRK09862 putative ATP-dependen 100.0 9.1E-35 2E-39 254.7 15.8 188 2-213 286-491 (506)
14 PRK13406 bchD magnesium chelat 100.0 1.3E-28 2.8E-33 219.9 14.9 164 1-213 84-249 (584)
15 PF01078 Mg_chelatase: Magnesi 100.0 3.8E-29 8.2E-34 195.0 6.8 94 2-95 98-202 (206)
16 TIGR02442 Cob-chelat-sub cobal 99.9 2.6E-27 5.7E-32 214.8 15.7 182 2-213 118-303 (633)
17 TIGR02031 BchD-ChlD magnesium 99.9 1.1E-26 2.4E-31 208.9 16.6 179 1-213 75-257 (589)
18 COG1239 ChlI Mg-chelatase subu 99.9 1.2E-26 2.5E-31 195.7 12.0 184 1-213 135-321 (423)
19 TIGR02030 BchI-ChlI magnesium 99.9 1.9E-25 4E-30 188.1 14.2 184 1-213 122-308 (337)
20 CHL00081 chlI Mg-protoporyphyr 99.9 2.4E-25 5.2E-30 187.6 14.7 184 1-213 135-321 (350)
21 PRK13407 bchI magnesium chelat 99.9 7.7E-25 1.7E-29 184.0 14.6 183 1-212 119-304 (334)
22 PRK13531 regulatory ATPase Rav 99.8 3.5E-17 7.5E-22 142.3 17.1 178 3-210 102-280 (498)
23 TIGR00764 lon_rel lon-related 99.8 8.5E-18 1.8E-22 151.8 13.5 169 1-213 208-390 (608)
24 COG0714 MoxR-like ATPases [Gen 99.6 1.1E-14 2.4E-19 123.2 12.5 188 2-211 104-293 (329)
25 PRK13765 ATP-dependent proteas 99.5 1.1E-13 2.4E-18 125.2 14.5 166 1-212 217-398 (637)
26 PF07726 AAA_3: ATPase family 99.5 7.3E-15 1.6E-19 106.3 4.6 67 11-86 63-129 (131)
27 TIGR02640 gas_vesic_GvpN gas v 99.5 4.8E-13 1E-17 109.8 12.6 154 3-211 96-254 (262)
28 PF13335 Mg_chelatase_2: Magne 99.4 1E-11 2.2E-16 86.3 10.7 92 99-213 3-95 (96)
29 TIGR02902 spore_lonB ATP-depen 99.3 3.5E-11 7.6E-16 107.8 13.7 149 2-212 167-330 (531)
30 COG1067 LonB Predicted ATP-dep 99.3 1.7E-11 3.7E-16 110.8 11.7 170 1-212 216-397 (647)
31 TIGR01650 PD_CobS cobaltochela 99.3 2.2E-11 4.8E-16 101.8 11.2 155 2-193 124-283 (327)
32 PF05496 RuvB_N: Holliday junc 99.1 9.6E-10 2.1E-14 87.1 11.4 73 8-92 99-176 (233)
33 PF07728 AAA_5: AAA domain (dy 98.9 7.7E-10 1.7E-14 82.0 2.9 77 2-86 55-139 (139)
34 PRK00080 ruvB Holliday junctio 98.8 8.9E-08 1.9E-12 81.1 12.1 142 9-212 101-248 (328)
35 COG2204 AtoC Response regulato 98.7 2.1E-07 4.5E-12 81.3 11.6 60 2-63 227-286 (464)
36 COG2255 RuvB Holliday junction 98.6 1.3E-06 2.8E-11 71.3 13.7 144 8-213 101-250 (332)
37 TIGR00635 ruvB Holliday juncti 98.6 8.4E-07 1.8E-11 74.2 12.7 142 9-212 80-227 (305)
38 TIGR02903 spore_lon_C ATP-depe 98.6 5.8E-07 1.3E-11 82.1 12.6 77 3-90 258-349 (615)
39 smart00763 AAA_PrkA PrkA AAA d 98.6 8.3E-08 1.8E-12 81.4 5.9 79 3-89 229-308 (361)
40 TIGR02974 phageshock_pspF psp 98.6 2.2E-07 4.7E-12 78.7 8.4 104 2-112 85-190 (329)
41 COG1221 PspF Transcriptional r 98.6 2.9E-07 6.4E-12 79.1 9.1 60 2-63 165-224 (403)
42 COG3604 FhlA Transcriptional r 98.5 1.1E-06 2.4E-11 76.6 11.5 60 2-63 309-368 (550)
43 TIGR02915 PEP_resp_reg putativ 98.5 1.3E-06 2.9E-11 76.8 12.0 143 3-160 226-370 (445)
44 PRK11608 pspF phage shock prot 98.5 9.2E-07 2E-11 74.9 10.5 144 3-160 93-238 (326)
45 TIGR01817 nifA Nif-specific re 98.5 1.6E-06 3.5E-11 78.1 12.4 102 3-111 283-386 (534)
46 PRK11361 acetoacetate metaboli 98.5 3E-06 6.6E-11 74.7 13.0 143 3-160 230-374 (457)
47 PF13654 AAA_32: AAA domain; P 98.5 2.7E-07 5.9E-12 82.1 6.0 166 1-212 323-504 (509)
48 PHA02244 ATPase-like protein 98.5 5.3E-07 1.1E-11 76.7 7.4 81 8-92 178-258 (383)
49 PRK05022 anaerobic nitric oxid 98.4 2.5E-06 5.5E-11 76.4 11.8 143 3-160 274-418 (509)
50 COG1224 TIP49 DNA helicase TIP 98.4 1.8E-06 3.9E-11 72.5 9.8 137 11-214 292-432 (450)
51 TIGR02329 propionate_PrpR prop 98.4 5.4E-06 1.2E-10 74.3 13.3 104 2-112 299-404 (526)
52 COG3829 RocR Transcriptional r 98.4 3.5E-06 7.7E-11 74.3 11.7 60 2-63 332-391 (560)
53 PRK10923 glnG nitrogen regulat 98.4 4.5E-06 9.7E-11 74.0 12.6 104 2-112 224-329 (469)
54 PRK05342 clpX ATP-dependent pr 98.4 9.9E-07 2.2E-11 76.8 8.0 63 4-67 167-247 (412)
55 PRK10365 transcriptional regul 98.4 5.3E-06 1.1E-10 72.8 12.1 59 3-63 226-284 (441)
56 PRK15424 propionate catabolism 98.4 6.1E-06 1.3E-10 74.1 12.4 60 2-63 314-373 (538)
57 PRK11388 DNA-binding transcrip 98.4 5.7E-06 1.2E-10 76.1 12.3 60 2-63 408-467 (638)
58 KOG1942|consensus 98.3 6E-06 1.3E-10 67.9 10.3 138 11-214 297-438 (456)
59 PF00158 Sigma54_activat: Sigm 98.3 3.5E-07 7.5E-12 70.2 3.0 60 2-63 85-144 (168)
60 PRK15115 response regulator Gl 98.3 1.4E-05 3.1E-10 70.3 13.4 59 3-63 221-279 (444)
61 TIGR01818 ntrC nitrogen regula 98.3 9.2E-06 2E-10 71.8 12.1 59 3-63 221-279 (463)
62 TIGR00382 clpX endopeptidase C 98.3 2.3E-06 5.1E-11 74.3 7.4 59 3-63 174-248 (413)
63 PRK10820 DNA-binding transcrip 98.3 1E-05 2.2E-10 72.7 11.0 103 3-112 291-395 (520)
64 TIGR02881 spore_V_K stage V sp 98.1 6.4E-05 1.4E-09 61.6 11.8 144 5-207 100-253 (261)
65 TIGR02880 cbbX_cfxQ probable R 98.1 1.5E-05 3.2E-10 66.3 8.0 72 5-96 116-196 (284)
66 PRK11034 clpA ATP-dependent Cl 98.0 1.3E-05 2.8E-10 74.8 6.5 83 10-94 557-652 (758)
67 PF07724 AAA_2: AAA domain (Cd 97.9 6.5E-06 1.4E-10 63.3 2.8 59 3-63 61-130 (171)
68 CHL00181 cbbX CbbX; Provisiona 97.9 8.9E-05 1.9E-09 61.7 8.5 72 5-96 117-197 (287)
69 COG2256 MGS1 ATPase related to 97.8 0.00013 2.8E-09 62.4 9.3 59 11-95 105-163 (436)
70 PRK10787 DNA-binding ATP-depen 97.8 6.4E-05 1.4E-09 70.6 8.2 82 10-107 416-504 (784)
71 TIGR03346 chaperone_ClpB ATP-d 97.8 9.5E-05 2E-09 70.3 9.0 83 10-94 667-762 (852)
72 PRK15429 formate hydrogenlyase 97.8 0.00016 3.5E-09 67.2 10.2 143 3-160 463-607 (686)
73 TIGR00763 lon ATP-dependent pr 97.7 0.00013 2.7E-09 68.8 7.3 82 10-106 414-502 (775)
74 TIGR02639 ClpA ATP-dependent C 97.6 9.3E-05 2E-09 69.2 6.0 99 9-110 552-663 (731)
75 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00019 4.1E-09 68.1 7.9 154 10-203 668-841 (852)
76 CHL00095 clpC Clp protease ATP 97.6 0.00037 7.9E-09 66.1 9.8 82 11-94 612-718 (821)
77 COG3284 AcoR Transcriptional a 97.6 0.00024 5.3E-09 63.8 7.9 58 3-63 400-457 (606)
78 KOG2680|consensus 97.6 0.0016 3.5E-08 54.0 11.4 136 11-214 289-429 (454)
79 COG0542 clpA ATP-binding subun 97.5 0.00032 6.8E-09 65.1 7.2 79 12-92 595-689 (786)
80 KOG2028|consensus 97.4 0.00069 1.5E-08 57.6 7.9 56 11-92 223-278 (554)
81 PRK10865 protein disaggregatio 97.4 0.001 2.2E-08 63.3 9.7 97 10-109 670-779 (857)
82 PRK13341 recombination factor 97.4 0.0037 8E-08 58.4 12.7 30 10-39 109-138 (725)
83 PRK14962 DNA polymerase III su 97.3 0.0042 9.1E-08 55.3 12.2 53 9-87 116-169 (472)
84 PRK13342 recombination factor 97.3 0.0034 7.5E-08 54.9 11.6 56 10-93 92-149 (413)
85 PRK05201 hslU ATP-dependent pr 97.3 0.00069 1.5E-08 59.0 6.7 143 6-188 244-400 (443)
86 PRK03992 proteasome-activating 97.2 0.0076 1.6E-07 52.4 12.5 36 177-212 335-370 (389)
87 PF12774 AAA_6: Hydrolytic ATP 97.1 0.0077 1.7E-07 48.6 10.5 70 10-87 84-160 (231)
88 COG5271 MDN1 AAA ATPase contai 97.1 0.00089 1.9E-08 66.4 5.5 82 2-90 1283-1370(4600)
89 TIGR01242 26Sp45 26S proteasom 97.1 0.0072 1.6E-07 52.0 10.8 36 177-212 326-361 (364)
90 TIGR00390 hslU ATP-dependent p 97.1 0.0023 4.9E-08 55.8 7.5 141 9-189 246-399 (441)
91 PRK07003 DNA polymerase III su 97.0 0.012 2.6E-07 54.9 12.2 59 9-93 118-176 (830)
92 PRK00411 cdc6 cell division co 97.0 0.011 2.3E-07 51.2 11.5 53 146-212 228-280 (394)
93 COG0466 Lon ATP-dependent Lon 97.0 0.0018 3.9E-08 59.3 6.5 70 9-91 416-492 (782)
94 cd00009 AAA The AAA+ (ATPases 97.0 0.0013 2.8E-08 47.7 4.7 69 7-92 81-149 (151)
95 TIGR02639 ClpA ATP-dependent C 97.0 0.0035 7.5E-08 58.8 8.5 120 11-161 275-404 (731)
96 KOG2545|consensus 97.0 0.053 1.1E-06 46.9 14.5 164 1-213 364-534 (543)
97 TIGR02928 orc1/cdc6 family rep 96.9 0.018 3.9E-07 49.2 11.4 52 147-212 221-272 (365)
98 PRK04132 replication factor C 96.8 0.025 5.4E-07 53.6 12.3 55 12-92 632-686 (846)
99 COG5271 MDN1 AAA ATPase contai 96.7 0.0017 3.7E-08 64.6 4.4 78 7-91 1608-1687(4600)
100 PTZ00112 origin recognition co 96.7 0.014 3E-07 55.4 10.0 133 13-212 872-1004(1164)
101 PLN03025 replication factor C 96.7 0.044 9.5E-07 46.3 12.1 52 10-86 99-150 (319)
102 TIGR01241 FtsH_fam ATP-depende 96.6 0.023 5.1E-07 50.9 10.8 65 11-99 148-228 (495)
103 PRK14961 DNA polymerase III su 96.6 0.057 1.2E-06 46.5 12.6 28 9-36 118-145 (363)
104 COG3283 TyrR Transcriptional r 96.6 0.029 6.2E-07 47.9 10.2 59 2-62 285-343 (511)
105 CHL00176 ftsH cell division pr 96.6 0.022 4.7E-07 52.6 10.3 60 12-94 277-352 (638)
106 PRK14957 DNA polymerase III su 96.6 0.054 1.2E-06 49.1 12.6 58 9-93 118-176 (546)
107 PRK12402 replication factor C 96.6 0.12 2.6E-06 43.5 14.2 28 9-36 124-151 (337)
108 CHL00195 ycf46 Ycf46; Provisio 96.5 0.027 5.8E-07 50.4 10.2 35 177-212 427-461 (489)
109 PTZ00454 26S protease regulato 96.5 0.047 1E-06 47.6 11.5 37 176-212 348-384 (398)
110 PRK08451 DNA polymerase III su 96.5 0.094 2E-06 47.4 13.5 57 9-92 116-173 (535)
111 PRK00440 rfc replication facto 96.5 0.11 2.3E-06 43.5 13.3 28 9-36 101-128 (319)
112 PRK08691 DNA polymerase III su 96.5 0.031 6.6E-07 51.8 10.5 28 9-36 118-145 (709)
113 PRK14956 DNA polymerase III su 96.4 0.055 1.2E-06 48.2 11.5 50 12-87 123-173 (484)
114 PRK06645 DNA polymerase III su 96.4 0.099 2.1E-06 47.0 13.0 58 9-92 127-184 (507)
115 PRK08084 DNA replication initi 96.4 0.041 8.9E-07 44.4 9.6 50 146-213 186-235 (235)
116 PRK14949 DNA polymerase III su 96.3 0.049 1.1E-06 51.8 11.1 58 9-93 118-176 (944)
117 PF12775 AAA_7: P-loop contain 96.3 0.012 2.5E-07 48.7 6.4 90 12-113 102-197 (272)
118 PRK11331 5-methylcytosine-spec 96.3 0.0047 1E-07 54.3 4.3 75 10-92 272-356 (459)
119 COG4650 RtcR Sigma54-dependent 96.3 0.001 2.2E-08 55.2 0.1 59 2-62 274-332 (531)
120 PRK14958 DNA polymerase III su 96.3 0.051 1.1E-06 48.9 10.9 28 9-36 118-145 (509)
121 PRK11034 clpA ATP-dependent Cl 96.2 0.016 3.6E-07 54.4 7.5 124 9-163 277-410 (758)
122 PRK10733 hflB ATP-dependent me 96.2 0.024 5.1E-07 52.5 8.4 35 177-211 355-389 (644)
123 PF08298 AAA_PrkA: PrkA AAA do 96.2 0.0018 3.9E-08 55.0 0.9 77 3-87 226-303 (358)
124 PF00004 AAA: ATPase family as 96.1 0.0033 7.2E-08 45.2 1.7 60 11-92 59-130 (132)
125 PRK07994 DNA polymerase III su 96.0 0.16 3.5E-06 46.9 12.5 58 10-94 119-177 (647)
126 TIGR03345 VI_ClpV1 type VI sec 96.0 0.025 5.5E-07 53.9 7.5 122 11-163 281-411 (852)
127 PRK14959 DNA polymerase III su 95.9 0.095 2.1E-06 48.1 10.8 28 9-36 118-145 (624)
128 PRK14960 DNA polymerase III su 95.9 0.14 3E-06 47.4 11.5 27 10-36 118-144 (702)
129 PRK14951 DNA polymerase III su 95.9 0.17 3.7E-06 46.6 12.3 58 9-93 123-181 (618)
130 PRK14964 DNA polymerase III su 95.9 0.12 2.7E-06 46.2 11.1 28 9-36 115-142 (491)
131 PF06068 TIP49: TIP49 C-termin 95.9 0.035 7.6E-07 47.6 7.1 64 12-94 280-347 (398)
132 PRK05563 DNA polymerase III su 95.8 0.2 4.3E-06 45.7 12.4 54 8-87 117-171 (559)
133 PTZ00361 26 proteosome regulat 95.8 0.081 1.8E-06 46.7 9.5 36 177-212 387-422 (438)
134 PRK12323 DNA polymerase III su 95.7 0.07 1.5E-06 49.2 8.9 57 10-93 124-181 (700)
135 TIGR03420 DnaA_homol_Hda DnaA 95.7 0.07 1.5E-06 42.3 8.1 49 145-211 177-225 (226)
136 PRK06620 hypothetical protein; 95.6 0.22 4.8E-06 39.6 10.4 48 146-211 166-213 (214)
137 TIGR02397 dnaX_nterm DNA polym 95.5 0.21 4.5E-06 42.4 10.7 28 9-36 116-143 (355)
138 PHA01747 putative ATP-dependen 95.5 0.03 6.6E-07 47.9 5.3 87 3-91 237-340 (425)
139 PRK14952 DNA polymerase III su 95.4 0.35 7.5E-06 44.3 12.4 58 8-92 116-174 (584)
140 PRK08903 DnaA regulatory inact 95.3 0.31 6.6E-06 38.8 10.5 134 9-212 89-224 (227)
141 PRK09111 DNA polymerase III su 95.2 0.49 1.1E-05 43.5 12.8 29 8-36 130-158 (598)
142 PRK15455 PrkA family serine pr 95.1 0.14 3.1E-06 46.6 8.7 76 3-86 248-324 (644)
143 PRK14969 DNA polymerase III su 95.1 0.3 6.6E-06 44.2 10.9 28 9-36 118-145 (527)
144 PRK06647 DNA polymerase III su 95.1 0.31 6.7E-06 44.5 10.9 29 8-36 117-145 (563)
145 CHL00095 clpC Clp protease ATP 95.0 0.21 4.6E-06 47.7 10.1 124 10-164 271-403 (821)
146 PRK14953 DNA polymerase III su 94.9 0.4 8.6E-06 43.0 11.1 28 9-36 118-145 (486)
147 PHA02544 44 clamp loader, smal 94.9 0.13 2.7E-06 43.1 7.5 55 9-88 99-154 (316)
148 PRK14965 DNA polymerase III su 94.9 0.31 6.8E-06 44.6 10.5 53 8-86 117-170 (576)
149 PRK14963 DNA polymerase III su 94.9 1.1 2.4E-05 40.4 13.8 28 9-36 115-142 (504)
150 PRK14970 DNA polymerase III su 94.8 0.99 2.2E-05 38.7 13.0 28 9-36 107-134 (367)
151 PRK07764 DNA polymerase III su 94.7 0.72 1.6E-05 44.1 12.6 28 9-36 119-146 (824)
152 PRK05896 DNA polymerase III su 94.6 0.34 7.4E-06 44.4 10.0 28 9-36 118-145 (605)
153 PRK09087 hypothetical protein; 94.4 1.1 2.4E-05 35.9 11.5 50 146-213 172-221 (226)
154 TIGR01243 CDC48 AAA family ATP 94.4 0.47 1E-05 44.7 10.7 66 10-99 546-625 (733)
155 PF13337 Lon_2: Putative ATP-d 94.3 0.57 1.2E-05 41.3 10.2 165 3-212 254-429 (457)
156 PRK07133 DNA polymerase III su 94.2 0.85 1.8E-05 42.8 11.8 57 9-92 117-174 (725)
157 TIGR00362 DnaA chromosomal rep 94.2 0.58 1.2E-05 40.8 10.4 25 11-35 200-226 (405)
158 PF00808 CBFD_NFYB_HMF: Histon 94.2 0.35 7.6E-06 30.7 6.6 64 126-211 2-65 (65)
159 PF13148 DUF3987: Protein of u 94.1 0.15 3.1E-06 43.9 6.3 183 11-213 150-359 (378)
160 COG1474 CDC6 Cdc6-related prot 94.1 0.49 1.1E-05 40.8 9.4 138 12-211 125-262 (366)
161 cd07981 TAF12 TATA Binding Pro 94.0 0.74 1.6E-05 30.0 8.0 47 146-212 19-65 (72)
162 PRK00149 dnaA chromosomal repl 94.0 0.26 5.6E-06 43.6 7.7 23 12-34 213-237 (450)
163 CHL00206 ycf2 Ycf2; Provisiona 93.8 0.69 1.5E-05 47.7 10.9 64 12-95 1734-1804(2281)
164 KOG2004|consensus 93.8 0.18 3.8E-06 46.8 6.2 68 9-90 504-579 (906)
165 COG2812 DnaX DNA polymerase II 93.6 0.77 1.7E-05 41.4 9.9 54 8-86 117-170 (515)
166 TIGR03346 chaperone_ClpB ATP-d 93.6 0.21 4.5E-06 47.9 6.8 122 11-163 267-397 (852)
167 PRK14950 DNA polymerase III su 93.4 1.7 3.6E-05 40.0 12.0 29 8-36 118-146 (585)
168 PRK14955 DNA polymerase III su 93.3 1.1 2.4E-05 39.0 10.4 29 8-36 125-153 (397)
169 PRK08727 hypothetical protein; 93.2 1 2.3E-05 36.1 9.5 49 146-212 181-229 (233)
170 PRK07940 DNA polymerase III su 93.2 0.11 2.4E-06 45.3 4.0 59 9-93 116-174 (394)
171 TIGR03015 pepcterm_ATPase puta 93.1 1.7 3.8E-05 35.2 10.8 51 145-212 214-264 (269)
172 PRK10865 protein disaggregatio 93.0 0.22 4.7E-06 47.8 5.9 118 12-160 273-399 (857)
173 PRK14086 dnaA chromosomal repl 93.0 0.81 1.8E-05 42.1 9.3 25 12-36 379-405 (617)
174 PRK06305 DNA polymerase III su 92.8 1.7 3.8E-05 38.6 11.0 28 9-36 120-147 (451)
175 PRK12422 chromosomal replicati 92.8 0.84 1.8E-05 40.5 9.0 65 10-94 202-270 (445)
176 PRK14971 DNA polymerase III su 92.7 3.3 7.1E-05 38.4 12.9 29 8-36 119-147 (614)
177 COG1223 Predicted ATPase (AAA+ 92.5 0.84 1.8E-05 37.6 7.8 36 177-212 317-353 (368)
178 KOG1051|consensus 92.4 0.18 3.9E-06 48.0 4.4 55 7-63 657-711 (898)
179 KOG0734|consensus 92.2 0.75 1.6E-05 41.5 7.7 36 176-211 503-538 (752)
180 COG1220 HslU ATP-dependent pro 91.8 0.96 2.1E-05 38.6 7.6 137 10-187 250-400 (444)
181 TIGR02688 conserved hypothetic 91.8 3.1 6.7E-05 36.7 11.0 37 176-212 394-431 (449)
182 PF05272 VirE: Virulence-assoc 91.8 0.18 3.8E-06 39.7 3.1 56 8-63 93-150 (198)
183 PLN00035 histone H4; Provision 91.5 1.9 4.2E-05 30.1 7.7 64 126-212 29-92 (103)
184 PRK14948 DNA polymerase III su 91.3 3.2 6.9E-05 38.5 11.2 28 9-36 120-147 (620)
185 COG1222 RPT1 ATP-dependent 26S 91.2 5.5 0.00012 34.3 11.5 80 12-116 246-338 (406)
186 cd00076 H4 Histone H4, one of 90.9 2.6 5.6E-05 28.4 7.6 64 126-212 13-76 (85)
187 PRK14087 dnaA chromosomal repl 90.8 2.2 4.7E-05 38.0 9.3 25 11-35 207-233 (450)
188 KOG0730|consensus 90.7 5 0.00011 37.1 11.5 77 12-116 529-618 (693)
189 PF03847 TFIID_20kDa: Transcri 90.6 2.3 4.9E-05 27.4 6.9 54 137-211 7-62 (68)
190 KOG0736|consensus 90.6 6.8 0.00015 37.1 12.3 102 12-150 766-882 (953)
191 smart00803 TAF TATA box bindin 90.4 3.2 6.9E-05 26.4 7.5 63 127-212 3-65 (65)
192 KOG0745|consensus 90.3 0.21 4.7E-06 43.7 2.4 59 5-63 286-358 (564)
193 PRK14954 DNA polymerase III su 89.9 6.9 0.00015 36.3 12.0 29 8-36 125-153 (620)
194 KOG1808|consensus 89.8 0.22 4.9E-06 50.7 2.5 81 4-90 499-582 (1856)
195 PF14532 Sigma54_activ_2: Sigm 89.8 0.62 1.4E-05 34.0 4.4 29 8-36 67-95 (138)
196 PTZ00015 histone H4; Provision 89.4 3.6 7.8E-05 28.7 7.6 64 126-212 30-93 (102)
197 PF13177 DNA_pol3_delta2: DNA 88.9 0.31 6.6E-06 37.0 2.2 57 9-92 101-158 (162)
198 TIGR03689 pup_AAA proteasome A 88.8 0.57 1.2E-05 42.2 4.2 67 11-101 290-370 (512)
199 PF00125 Histone: Core histone 88.8 4.3 9.4E-05 26.2 7.4 48 146-213 27-74 (75)
200 KOG0989|consensus 88.3 2 4.4E-05 36.1 6.6 51 12-87 131-181 (346)
201 smart00576 BTP Bromodomain tra 88.2 5.4 0.00012 26.1 8.5 48 145-212 22-69 (77)
202 COG0464 SpoVK ATPases of the A 88.0 6.9 0.00015 35.0 10.6 63 10-95 335-410 (494)
203 PRK14088 dnaA chromosomal repl 87.9 2.8 6.1E-05 37.1 7.8 24 11-34 195-220 (440)
204 PRK04195 replication factor C 87.8 20 0.00042 32.2 13.3 27 10-36 98-128 (482)
205 TIGR00678 holB DNA polymerase 87.3 0.78 1.7E-05 35.3 3.6 28 9-36 95-122 (188)
206 cd07979 TAF9 TATA Binding Prot 86.8 1.3 2.7E-05 31.8 4.2 48 146-213 18-65 (117)
207 KOG2035|consensus 86.0 2.3 5.1E-05 35.4 5.8 61 12-98 129-189 (351)
208 COG1219 ClpX ATP-dependent pro 85.8 0.44 9.5E-06 40.3 1.6 62 6-68 158-237 (408)
209 KOG0738|consensus 85.5 3 6.4E-05 36.4 6.4 71 12-104 306-390 (491)
210 PRK05642 DNA replication initi 84.9 17 0.00036 29.2 10.4 49 146-212 185-233 (234)
211 smart00382 AAA ATPases associa 83.8 1.6 3.4E-05 30.6 3.6 65 12-92 80-144 (148)
212 smart00417 H4 Histone H4. 82.5 6.7 0.00014 25.7 5.7 61 126-209 13-73 (74)
213 PRK05707 DNA polymerase III su 82.4 1.9 4.2E-05 36.6 4.1 55 8-88 104-159 (328)
214 COG2036 HHT1 Histones H3 and H 82.1 12 0.00026 25.5 7.1 68 123-213 16-83 (91)
215 PLN00020 ribulose bisphosphate 81.6 2.2 4.7E-05 37.1 4.0 67 12-92 214-297 (413)
216 TIGR02653 Lon_rel_chp conserve 81.4 14 0.0003 34.4 9.3 37 176-212 401-438 (675)
217 PRK09112 DNA polymerase III su 80.2 3 6.6E-05 35.8 4.6 56 11-93 142-198 (351)
218 PRK08058 DNA polymerase III su 79.8 2.1 4.7E-05 36.3 3.5 29 8-36 108-136 (329)
219 PF08369 PCP_red: Proto-chloro 78.1 3 6.5E-05 24.5 2.7 32 177-210 13-44 (45)
220 COG2766 PrkA Putative Ser prot 77.3 0.61 1.3E-05 42.1 -0.6 76 3-86 249-325 (649)
221 PRK07399 DNA polymerase III su 76.1 4.2 9.2E-05 34.3 4.2 58 8-92 122-179 (314)
222 COG5245 DYN1 Dynein, heavy cha 75.9 6.6 0.00014 40.4 5.8 143 11-195 1564-1717(3164)
223 PRK06964 DNA polymerase III su 74.9 5.6 0.00012 34.1 4.6 60 9-94 131-190 (342)
224 PRK14700 recombination factor 74.0 21 0.00046 29.9 7.7 15 78-93 23-37 (300)
225 PF07524 Bromo_TP: Bromodomain 73.0 23 0.00049 23.0 6.4 46 147-212 24-69 (77)
226 PRK05917 DNA polymerase III su 72.8 12 0.00026 31.3 6.0 55 9-88 94-148 (290)
227 TIGR01243 CDC48 AAA family ATP 72.3 6.6 0.00014 37.2 4.9 61 11-94 272-345 (733)
228 PRK06871 DNA polymerase III su 71.9 5.9 0.00013 33.7 4.0 59 9-93 106-164 (325)
229 PRK08769 DNA polymerase III su 71.6 5.9 0.00013 33.6 4.0 57 9-92 112-169 (319)
230 PRK08485 DNA polymerase III su 68.4 58 0.0013 25.8 9.7 52 10-86 54-105 (206)
231 smart00427 H2B Histone H2B. 68.2 35 0.00075 23.2 7.3 31 183-213 36-66 (89)
232 PLN00158 histone H2B; Provisio 67.3 43 0.00093 23.9 7.8 65 130-214 27-93 (116)
233 COG0470 HolB ATPase involved i 66.9 6.8 0.00015 32.5 3.4 55 9-88 108-162 (325)
234 KOG1808|consensus 66.6 5.7 0.00012 41.1 3.3 82 3-91 784-872 (1856)
235 PF00308 Bac_DnaA: Bacterial d 66.4 13 0.00028 29.6 4.8 27 9-35 96-124 (219)
236 KOG1142|consensus 66.2 9.1 0.0002 31.2 3.8 46 146-211 172-217 (258)
237 PRK07471 DNA polymerase III su 65.8 12 0.00026 32.3 4.8 25 12-36 143-167 (365)
238 PF05673 DUF815: Protein of un 65.1 59 0.0013 26.6 8.3 76 10-94 106-193 (249)
239 TIGR00602 rad24 checkpoint pro 61.7 1.4E+02 0.0031 28.0 11.5 26 10-35 195-220 (637)
240 PRK06581 DNA polymerase III su 61.3 9.3 0.0002 31.2 3.0 29 8-36 87-115 (263)
241 PRK07993 DNA polymerase III su 60.6 7.5 0.00016 33.1 2.6 54 9-87 107-160 (334)
242 COG0465 HflB ATP-dependent Zn 60.4 91 0.002 28.9 9.5 76 12-115 244-335 (596)
243 PRK06090 DNA polymerase III su 60.1 13 0.00028 31.5 3.9 58 9-93 107-165 (319)
244 PF13558 SbcCD_C: Putative exo 59.6 11 0.00024 25.4 2.8 26 11-36 64-90 (90)
245 KOG0990|consensus 58.1 9.9 0.00022 32.3 2.8 27 12-38 133-159 (360)
246 PRK07276 DNA polymerase III su 57.5 13 0.00028 31.1 3.4 57 9-92 103-160 (290)
247 PF13401 AAA_22: AAA domain; P 57.0 9.1 0.0002 27.0 2.2 24 12-35 89-113 (131)
248 PTZ00463 histone H2B; Provisio 57.0 69 0.0015 22.9 7.9 65 130-214 28-94 (117)
249 KOG3595|consensus 56.9 34 0.00073 35.1 6.7 85 13-110 195-287 (1395)
250 PRK06893 DNA replication initi 56.5 90 0.002 24.8 8.1 49 146-212 180-228 (229)
251 PF02291 TFIID-31kDa: Transcri 55.9 23 0.00049 25.9 4.0 32 181-212 44-75 (129)
252 smart00794 AgrD Staphylococcal 55.8 4.8 0.0001 23.6 0.4 15 56-70 20-34 (45)
253 KOG0991|consensus 55.8 11 0.00023 30.9 2.5 27 10-36 113-139 (333)
254 PF00910 RNA_helicase: RNA hel 55.4 15 0.00033 25.4 3.1 51 10-61 49-106 (107)
255 KOG1514|consensus 54.8 92 0.002 29.5 8.5 68 12-97 510-577 (767)
256 PF09077 Phage-MuB_C: Mu B tra 54.3 9.6 0.00021 25.2 1.7 33 179-212 44-76 (78)
257 KOG0731|consensus 53.3 1.8E+02 0.0039 27.9 10.3 76 12-115 405-497 (774)
258 KOG0870|consensus 51.6 1.1E+02 0.0023 23.4 7.8 66 127-212 11-76 (172)
259 KOG0871|consensus 50.0 1.1E+02 0.0023 22.9 7.3 64 125-212 11-77 (156)
260 KOG0733|consensus 48.3 17 0.00037 33.7 2.9 45 12-63 284-339 (802)
261 COG1618 Predicted nucleotide k 48.1 59 0.0013 25.0 5.3 29 11-39 101-132 (179)
262 cd00074 H2A Histone 2A; H2A is 46.7 23 0.00051 25.3 2.8 64 127-212 21-84 (115)
263 PF02861 Clp_N: Clp amino term 46.4 19 0.00041 21.0 2.1 22 190-211 1-22 (53)
264 TIGR01613 primase_Cterm phage/ 45.4 1.3E+02 0.0028 25.0 7.6 78 6-93 124-202 (304)
265 COG1485 Predicted ATPase [Gene 45.0 27 0.00058 30.1 3.4 40 9-63 129-171 (367)
266 PF07693 KAP_NTPase: KAP famil 43.5 20 0.00043 29.8 2.5 42 11-63 173-214 (325)
267 PF05931 AgrD: Staphylococcal 42.8 10 0.00023 22.2 0.5 15 56-70 20-34 (45)
268 PF02969 TAF: TATA box binding 42.0 91 0.002 19.9 5.9 48 145-212 19-66 (66)
269 COG5247 BUR6 Class 2 transcrip 41.1 35 0.00077 23.7 2.9 29 184-212 59-87 (113)
270 COG0542 clpA ATP-binding subun 40.5 1.3E+02 0.0028 28.9 7.4 127 8-165 260-396 (786)
271 PRK05564 DNA polymerase III su 39.5 36 0.00079 28.4 3.4 29 8-36 91-119 (313)
272 PRK05818 DNA polymerase III su 38.9 26 0.00056 28.9 2.3 27 10-36 88-114 (261)
273 TIGR02934 nifT_nitrog probable 37.5 30 0.00064 22.2 1.9 19 3-21 36-54 (67)
274 cd08050 TAF6 TATA Binding Prot 36.6 1.3E+02 0.0027 25.8 6.3 48 146-213 16-63 (343)
275 PF15630 CENP-S: Kinetochore c 34.9 47 0.001 21.8 2.7 29 183-211 42-70 (76)
276 PF13173 AAA_14: AAA domain 34.2 53 0.0011 23.3 3.2 27 10-37 61-87 (128)
277 PF06345 Drf_DAD: DRF Autoregu 34.1 30 0.00066 14.9 1.1 13 26-38 2-14 (15)
278 PF12128 DUF3584: Protein of u 34.0 40 0.00087 34.0 3.3 29 13-41 1150-1178(1201)
279 PRK08699 DNA polymerase III su 32.7 46 0.001 28.2 3.0 29 9-37 112-140 (325)
280 KOG0737|consensus 32.2 19 0.00041 31.1 0.6 86 12-111 188-276 (386)
281 COG0593 DnaA ATPase involved i 32.1 3.6E+02 0.0078 23.8 8.7 32 179-211 279-310 (408)
282 PRK10536 hypothetical protein; 31.2 66 0.0014 26.5 3.6 26 10-35 176-201 (262)
283 PF06988 NifT: NifT/FixU prote 30.8 41 0.00088 21.4 1.8 19 3-21 36-54 (64)
284 KOG1659|consensus 30.4 80 0.0017 25.1 3.7 30 183-212 48-77 (224)
285 KOG0652|consensus 30.3 63 0.0014 27.0 3.3 44 12-63 266-320 (424)
286 KOG2170|consensus 30.0 30 0.00066 29.3 1.4 31 6-36 174-204 (344)
287 PF10987 DUF2806: Protein of u 29.9 2.9E+02 0.0062 22.0 8.4 62 122-196 34-95 (219)
288 PRK02910 light-independent pro 28.7 1.2E+02 0.0026 27.5 5.2 47 146-212 469-515 (519)
289 CHL00076 chlB photochlorophyll 28.5 1.2E+02 0.0025 27.6 5.0 47 146-212 463-509 (513)
290 TIGR01278 DPOR_BchB light-inde 28.1 1.3E+02 0.0028 27.3 5.2 48 146-213 462-509 (511)
291 PRK07132 DNA polymerase III su 27.7 64 0.0014 27.1 3.0 28 9-36 89-116 (299)
292 PRK04296 thymidine kinase; Pro 27.0 71 0.0015 24.6 3.0 25 12-36 80-104 (190)
293 PF03969 AFG1_ATPase: AFG1-lik 26.1 39 0.00086 29.2 1.5 40 9-63 125-168 (362)
294 PF00273 Serum_albumin: Serum 24.3 1.8E+02 0.004 22.1 4.8 31 130-162 133-164 (178)
295 PF14821 Thr_synth_N: Threonin 23.3 80 0.0017 20.7 2.3 23 8-30 23-45 (79)
296 COG3950 Predicted ATP-binding 22.5 75 0.0016 27.6 2.4 28 9-36 294-322 (440)
297 PF14069 SpoVIF: Stage VI spor 22.3 2.4E+02 0.0053 18.6 5.5 34 128-161 29-62 (79)
298 PF04157 EAP30: EAP30/Vps36 fa 22.1 98 0.0021 24.6 3.0 24 191-214 121-145 (223)
299 COG4701 Uncharacterized protei 22.1 1.9E+02 0.0041 21.5 4.1 41 143-196 121-161 (162)
300 smart00487 DEXDc DEAD-like hel 21.9 68 0.0015 23.6 2.0 26 10-35 129-155 (201)
301 PF14459 Prok-E2_C: Prokaryoti 21.1 1.8E+02 0.004 20.6 3.7 25 36-63 54-78 (131)
302 PF10555 MraY_sig1: Phospho-N- 21.0 49 0.0011 14.0 0.5 7 10-16 7-13 (13)
303 COG3454 Metal-dependent hydrol 20.5 5.6E+02 0.012 22.1 8.1 74 125-212 168-242 (377)
No 1
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.3e-57 Score=405.89 Aligned_cols=213 Identities=56% Similarity=0.832 Sum_probs=191.4
Q ss_pred CCcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcc-cccccCC
Q psy7187 1 MEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKG-EQNIDFM 79 (214)
Q Consensus 1 ~~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~-~~~~~l~ 79 (214)
+++|+|++||+||||||||++|+..++.+||||||||+|||+|+|++++|||||+|+||+||.+|+|+++++ .+|++||
T Consensus 374 LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~ 453 (682)
T COG1241 374 LEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLP 453 (682)
T ss_pred EeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCC-----CCCChHHHHHHHHHhHhccCCCCCHHHHHH
Q psy7187 80 PTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASD-----GELPLPVLKKYINYCRMRCGPRLTHEAGEK 154 (214)
Q Consensus 80 ~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~-----~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~ 154 (214)
++|||||||+|++.|.++++.|+.+|+||+..|............ ..-+.++||+||.|||+++.|.++++|.+.
T Consensus 454 ~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~ 533 (682)
T COG1241 454 APLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREE 533 (682)
T ss_pred hhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHH
Confidence 999999999999999999999999999999999754322100000 011678999999999998889999999999
Q ss_pred HHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhcC
Q psy7187 155 LKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRLF 214 (214)
Q Consensus 155 i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~lf 214 (214)
|.+||+.+|+.....+ .....++|+|+||++||||+||||+++++.|+++||.+|++|+
T Consensus 534 l~~~Yv~~Rk~~~~~~-~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv 592 (682)
T COG1241 534 LEDYYVEMRKKSALVE-EKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLV 592 (682)
T ss_pred HHHHHHHhhhcccccc-ccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHH
Confidence 9999999998754211 3456899999999999999999999999999999999999874
No 2
>KOG0480|consensus
Probab=100.00 E-value=1.6e-57 Score=393.98 Aligned_cols=210 Identities=44% Similarity=0.686 Sum_probs=193.8
Q ss_pred CCcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcc-cccccCC
Q psy7187 1 MEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKG-EQNIDFM 79 (214)
Q Consensus 1 ~~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~-~~~~~l~ 79 (214)
+|||+|+|||+||||||||+||+.+++.+|+||||||+|||+|||...+||||.+||||+||..|+||..|+ .+|+++|
T Consensus 433 iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~ms 512 (764)
T KOG0480|consen 433 IEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMS 512 (764)
T ss_pred eecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHH
Q psy7187 80 PTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRY 159 (214)
Q Consensus 80 ~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y 159 (214)
+||||||||+|++.|..|+..|..||+||+..|....... .....++.+.+++||.|||+ +.|.++.+|.+.|.+.|
T Consensus 513 ApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~--~~~~~~~~e~vrkYi~yAR~-~~P~ls~ea~~~lve~Y 589 (764)
T KOG0480|consen 513 APIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDAT--ERVCVYTLEQVRKYIRYARN-FKPKLSKEASEMLVEKY 589 (764)
T ss_pred chhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccc--cccccccHHHHHHHHHHHHh-cCccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999986643221 12347899999999999996 79999999999999999
Q ss_pred HHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhcC
Q psy7187 160 VLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRLF 214 (214)
Q Consensus 160 ~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~lf 214 (214)
..+|.....+++ ..+.++|.|+||+|||||+|.||+++++.||++||++|++|.
T Consensus 590 ~~lR~~~~~~~~-~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLl 643 (764)
T KOG0480|consen 590 KGLRQRDAQGNN-RSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELL 643 (764)
T ss_pred HHHHHhhccccC-cccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHH
Confidence 999988754433 456899999999999999999999999999999999999873
No 3
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=100.00 E-value=5.3e-58 Score=386.37 Aligned_cols=211 Identities=53% Similarity=0.847 Sum_probs=166.0
Q ss_pred CCcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcc-cccccCC
Q psy7187 1 MEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKG-EQNIDFM 79 (214)
Q Consensus 1 ~~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~-~~~~~l~ 79 (214)
++||++++|||||||||||++|+++++.+|+|+||+|+|+|+|+|+++++|++|+|+||+||..|+|+++++ .+|++++
T Consensus 112 leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~ 191 (331)
T PF00493_consen 112 LEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLP 191 (331)
T ss_dssp EEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-
T ss_pred EeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccc
Confidence 479999999999999999999999999999999999999999999999999999999999999999999988 8999999
Q ss_pred CCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCC--cCC-CCCCChHHHHHHHHHhHhccCCCCCHHHHHHHH
Q psy7187 80 PTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEID--VAS-DGELPLPVLKKYINYCRMRCGPRLTHEAGEKLK 156 (214)
Q Consensus 80 ~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~--~~~-~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~ 156 (214)
.+|||||||+|.+.|.++.+.|..+++||++.|........ ... ...++.+.+++||.|||+++.|.+++++.++|.
T Consensus 192 ~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~ 271 (331)
T PF00493_consen 192 PPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELII 271 (331)
T ss_dssp CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHH
T ss_pred hhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 99999999999999999999999999999999876642110 111 258999999999999997789999999999999
Q ss_pred HHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhcC
Q psy7187 157 NRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRLF 214 (214)
Q Consensus 157 ~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~lf 214 (214)
+||+.+|+.... .....++|+|++|+|||||+|||||++|+.|+++||.+|++||
T Consensus 272 ~~Yv~lR~~~~~---~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~ 326 (331)
T PF00493_consen 272 NYYVELRKESKS---NNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLF 326 (331)
T ss_dssp HHHCCCCHCHHC---HSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHH
T ss_pred HHHHHhcccccc---cccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHH
Confidence 999999987631 1234789999999999999999999999999999999999986
No 4
>KOG0481|consensus
Probab=100.00 E-value=6.2e-56 Score=376.31 Aligned_cols=214 Identities=75% Similarity=1.167 Sum_probs=197.7
Q ss_pred CCcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcc-cccccCC
Q psy7187 1 MEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKG-EQNIDFM 79 (214)
Q Consensus 1 ~~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~-~~~~~l~ 79 (214)
+|+|++|||||||||||||+||.++++-++|||||||+|+|+|+|++++|++||+|+||+||.+|+||..|+ .+|+.+-
T Consensus 419 lEGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~ 498 (729)
T KOG0481|consen 419 LEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFM 498 (729)
T ss_pred EecceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccccccCCcccccchh
Confidence 589999999999999999999999999999999999999999999999999999999999999999999997 9999999
Q ss_pred CCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccC---CcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHH
Q psy7187 80 PTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEI---DVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLK 156 (214)
Q Consensus 80 ~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~---~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~ 156 (214)
+.+||||||+|++.|.++++.|..||+||++.|....+.. ++...+.++.+.+|+||.|||.+|.|.||++|.+.|.
T Consensus 499 ~TILSRFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~YcR~kc~PrLs~~AaekL~ 578 (729)
T KOG0481|consen 499 PTILSRFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQYCRLKCGPRLSAEAAEKLS 578 (729)
T ss_pred hhHhhhccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999998632221 1235678899999999999999999999999999999
Q ss_pred HHHHHHhcCCCc---CCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhcC
Q psy7187 157 NRYVLMRNGSKE---DGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRLF 214 (214)
Q Consensus 157 ~~y~~~r~~~~~---~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~lf 214 (214)
+.|+.+|..-.. ......++|+|+|+||++||+++++|||+++..+|++||.+|++||
T Consensus 579 ~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~RLF 639 (729)
T KOG0481|consen 579 SRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHVEEALRLF 639 (729)
T ss_pred HHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHH
Confidence 999999866543 2356678999999999999999999999999999999999999998
No 5
>KOG0479|consensus
Probab=100.00 E-value=1.8e-54 Score=371.71 Aligned_cols=212 Identities=44% Similarity=0.728 Sum_probs=193.5
Q ss_pred CCcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcc-cccccCC
Q psy7187 1 MEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKG-EQNIDFM 79 (214)
Q Consensus 1 ~~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~-~~~~~l~ 79 (214)
||||++||||+||+|||||+||++-++.++||+||||+|+|+|+|++.+|+|||+|+||+||.+|+||.+++ .+|+.|+
T Consensus 389 LEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLp 468 (818)
T KOG0479|consen 389 LEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLP 468 (818)
T ss_pred hhcCceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCCChhhccCCc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred CCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCC----------------------------c----------
Q psy7187 80 PTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEID----------------------------V---------- 121 (214)
Q Consensus 80 ~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~----------------------------~---------- 121 (214)
.+||+||||+|++.|..|...|..|++||+++|......+. +
T Consensus 469 DSLLSRFDLlFv~lD~~d~~~D~~iSeHVLRmHrY~~pg~~dGe~~~~g~~v~~~~~~~~e~~~et~v~ek~n~llhg~~ 548 (818)
T KOG0479|consen 469 DSLLSRFDLLFVVLDDIDADIDRMISEHVLRMHRYLTPGEEDGEPVPEGNGVEGLSTENMEDKKETEVFEKFNTLLHGKA 548 (818)
T ss_pred HHHHhhhcEEEEEeccccchHHHHHHHHHHHHhhccCCcccCCCcccCCCcccccccccccccccchhHhhhhhhhhccc
Confidence 99999999999999999999999999999999966433310 0
Q ss_pred --CCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCC
Q psy7187 122 --ASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLE 199 (214)
Q Consensus 122 --~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r 199 (214)
...+.++.+++|+||.|||+++.|.|+.++.++|.+.|..+|...... ......++|+|+||+|||||.||||++++
T Consensus 549 k~~~~k~lti~F~rKYIhyAk~ri~P~Lt~ea~e~Ia~~Y~~LR~~d~~~-d~~rt~PiTARtLETlIRLaTAhAKaRlS 627 (818)
T KOG0479|consen 549 KQQHEKLLTIDFMRKYIHYAKSRIKPKLTQEAAEYIAEEYTDLRNDDSRK-DQERTSPITARTLETLIRLATAHAKARLS 627 (818)
T ss_pred cccccceeeHHHHHHHHHHHHhhcCccccHHHHHHHHHHHhhhhcccccc-ccccccCCcHHHHHHHHHHHHHHHHhhhc
Confidence 012356789999999999999899999999999999999999877643 23456799999999999999999999999
Q ss_pred CCCcHHHHHHHHhc
Q psy7187 200 PFAIDSHVTEALRL 213 (214)
Q Consensus 200 ~~V~~~Dv~~Ai~l 213 (214)
+.|+.+|++.|+.|
T Consensus 628 k~V~~~DAe~A~~L 641 (818)
T KOG0479|consen 628 KVVEKDDAEAAVNL 641 (818)
T ss_pred ceeehhhHHHHHHH
Confidence 99999999999876
No 6
>KOG0482|consensus
Probab=100.00 E-value=3e-55 Score=371.80 Aligned_cols=208 Identities=44% Similarity=0.703 Sum_probs=193.4
Q ss_pred CCcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcc-cccccCC
Q psy7187 1 MEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKG-EQNIDFM 79 (214)
Q Consensus 1 ~~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~-~~~~~l~ 79 (214)
+|+|+|||||+||||||||+||++.++.++||+||||+|||+|+|+.+||+|||+|+||+||.+|+|++..+ .+|++||
T Consensus 430 LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LP 509 (721)
T KOG0482|consen 430 LEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLP 509 (721)
T ss_pred eccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCc
Confidence 589999999999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred CCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHH
Q psy7187 80 PTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRY 159 (214)
Q Consensus 80 ~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y 159 (214)
.+|||||||++.+.|.+|.+.|..+|+||...|+...+.. ..-..++.+.+|.||.+||++ +|.++++..++|..+|
T Consensus 510 aALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~--~~fepl~~~~mR~yI~~ak~~-~P~vp~~l~dyi~~AY 586 (721)
T KOG0482|consen 510 AALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPP--LDFEPLDPNLMRRYISLAKRK-NPVVPEALADYITGAY 586 (721)
T ss_pred HHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCC--ccCCCCCHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999998765432 344578999999999999995 9999999999999999
Q ss_pred HHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhcC
Q psy7187 160 VLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRLF 214 (214)
Q Consensus 160 ~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~lf 214 (214)
+++|+.... .......|+|++.+|+|+|.|+|||++++.|.++||.+|++|+
T Consensus 587 v~~Rrea~~---~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLm 638 (721)
T KOG0482|consen 587 VELRREARS---SKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLM 638 (721)
T ss_pred HHHHHHhhc---cCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 999998763 2233578999999999999999999999999999999999984
No 7
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=100.00 E-value=4.2e-51 Score=371.74 Aligned_cols=214 Identities=33% Similarity=0.600 Sum_probs=188.4
Q ss_pred CCcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcc-cccccCC
Q psy7187 1 MEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKG-EQNIDFM 79 (214)
Q Consensus 1 ~~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~-~~~~~l~ 79 (214)
++||+|++|+||+|||||+++|+++++.+|+++||+|+|+|.|+|++.++|++|.||||+||.+|+||++++ .+|++||
T Consensus 548 le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp 627 (915)
T PTZ00111 548 IQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINIS 627 (915)
T ss_pred ccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCC
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhc---cc--C------------C-----cCCCCCCChHHHHHHHH
Q psy7187 80 PTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAG---QE--I------------D-----VASDGELPLPVLKKYIN 137 (214)
Q Consensus 80 ~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~---~~--~------------~-----~~~~~~l~~~~l~~~i~ 137 (214)
++|||||||+|++.|.++++.|..||.||++.|.... .. . . ......++.++|++||.
T Consensus 628 ~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~ 707 (915)
T PTZ00111 628 PSLFTRFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIK 707 (915)
T ss_pred hHHhhhhcEEEEecCCCChHHHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHHHHHH
Confidence 9999999999999999999999999999998763210 00 0 0 00113478999999999
Q ss_pred HhHhccCCCCCHHHHHHHHHHHHHHhcCCCc--------------------CCCCccccccCHHHHHHHHHHHHHHhccC
Q psy7187 138 YCRMRCGPRLTHEAGEKLKNRYVLMRNGSKE--------------------DGEKKLNIPITVRQLEAIVRIAESMAKMQ 197 (214)
Q Consensus 138 ~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~--------------------~~~~~~~~~~s~R~l~~lirlA~a~A~l~ 197 (214)
|||+++.|.|+++|.+.|.++|+.+|+.... ........++|+|+||+|||||+|||||+
T Consensus 708 YAR~~~~P~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~r 787 (915)
T PTZ00111 708 FSKLHCFPKLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMR 787 (915)
T ss_pred HHhccCCCCCCHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhc
Confidence 9999899999999999999999999974210 00112347899999999999999999999
Q ss_pred CCCCCcHHHHHHHHhcC
Q psy7187 198 LEPFAIDSHVTEALRLF 214 (214)
Q Consensus 198 ~r~~V~~~Dv~~Ai~lf 214 (214)
+++.|+++||.+|++||
T Consensus 788 Ls~~Vt~~Dv~~Ai~L~ 804 (915)
T PTZ00111 788 LSTVVTPADALQAVQIV 804 (915)
T ss_pred CcCcccHHHHHHHHHHH
Confidence 99999999999999985
No 8
>KOG0477|consensus
Probab=100.00 E-value=2.5e-51 Score=354.48 Aligned_cols=209 Identities=42% Similarity=0.690 Sum_probs=193.1
Q ss_pred CCcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcc-cccccCC
Q psy7187 1 MEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKG-EQNIDFM 79 (214)
Q Consensus 1 ~~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~-~~~~~l~ 79 (214)
||+|+|||||+||||||||++|++.++.++|||||||.|+|+|+|++++|.|||+||||+||..|+|++..+ .+|.+|+
T Consensus 537 LEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~lt 616 (854)
T KOG0477|consen 537 LEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLT 616 (854)
T ss_pred eccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCc--------CC--CCCCChHHHHHHHHHhHhccCCCCCH
Q psy7187 80 PTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDV--------AS--DGELPLPVLKKYINYCRMRCGPRLTH 149 (214)
Q Consensus 80 ~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~--------~~--~~~l~~~~l~~~i~~ar~~~~p~ls~ 149 (214)
.|+|||||+..++.|..|+..|+++|+.|+..|........+ -. -..++.+.||+||.|||.++.|.|..
T Consensus 617 ePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q 696 (854)
T KOG0477|consen 617 EPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYAREKVRPKLNQ 696 (854)
T ss_pred cchhhhcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHHHHHHHHHHHHhccccccc
Confidence 999999999999999999999999999999999776543310 01 12478999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 150 EAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 150 ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
-..+.+.+.|+.+|+++- ..+++++|.|++|++||+|+|||+|++|+.|+++|+..||+.
T Consensus 697 ~d~~K~s~vya~lRkES~----~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v 756 (854)
T KOG0477|consen 697 MDMDKISSVYADLRKESM----ATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRV 756 (854)
T ss_pred ccHHHHHHHHHHHHhhcc----ccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHH
Confidence 889999999999999874 456789999999999999999999999999999999999874
No 9
>KOG0478|consensus
Probab=100.00 E-value=1.2e-50 Score=353.51 Aligned_cols=206 Identities=45% Similarity=0.711 Sum_probs=190.6
Q ss_pred CCcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcc-cccccCC
Q psy7187 1 MEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKG-EQNIDFM 79 (214)
Q Consensus 1 ~~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~-~~~~~l~ 79 (214)
+|.|+|+|||||||||||||||++..++.|||+||||+++|+|||+.++|||||+|+|++||..++|+++++ .+|++||
T Consensus 517 LesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~Lp 596 (804)
T KOG0478|consen 517 LESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLP 596 (804)
T ss_pred eecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCC
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHH
Q psy7187 80 PTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRY 159 (214)
Q Consensus 80 ~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y 159 (214)
++||+||||+|.+.|.+|+-.|..|++||...+..... ......++...++.||.|||+++.|.+++|+.+.+..+|
T Consensus 597 ptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~---~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ay 673 (804)
T KOG0478|consen 597 PTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGE---KQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAY 673 (804)
T ss_pred hhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccc---cchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHh
Confidence 99999999999999999999999999999999876432 123345788899999999999989999999999999999
Q ss_pred HHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 160 VLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 160 ~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
+.+|+.+... .....++|++|+|+|+++|||++.+++.|...||++|++|
T Consensus 674 vd~rk~~~~~----~~itat~rQlesLiRlsEahak~r~s~~ve~~dV~eA~~l 723 (804)
T KOG0478|consen 674 VDMRKIGEGA----GQITATPRQLESLIRLSEAHAKMRLSNRVEEIDVEEAVRL 723 (804)
T ss_pred hhhhhhcccc----cccchhHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 9999887531 2367899999999999999999999999999999999876
No 10
>smart00350 MCM minichromosome maintenance proteins.
Probab=100.00 E-value=2.4e-49 Score=350.75 Aligned_cols=213 Identities=55% Similarity=0.834 Sum_probs=191.7
Q ss_pred CCcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcc-cccccCC
Q psy7187 1 MEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKG-EQNIDFM 79 (214)
Q Consensus 1 ~~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~-~~~~~l~ 79 (214)
++||++++||+|+|||||+++|+++++..|+++||+|+|+|.|+|.+.++|++|.||||+||++|+|++.++ .+|++|+
T Consensus 291 ~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~ 370 (509)
T smart00350 291 LEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLP 370 (509)
T ss_pred ecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCC
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHH
Q psy7187 80 PTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRY 159 (214)
Q Consensus 80 ~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y 159 (214)
+++||||||+|.+.|.++.+.|.+|++|+++.|..............++.+.|++||.|||+++.|.+++++.++|.++|
T Consensus 371 ~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y 450 (509)
T smart00350 371 APILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAY 450 (509)
T ss_pred hHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999988754321111123357899999999999999789999999999999999
Q ss_pred HHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhcC
Q psy7187 160 VLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRLF 214 (214)
Q Consensus 160 ~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~lf 214 (214)
..+|...... ......++|+|++++|+|+|+|+|+|++|++|+++||.+|++||
T Consensus 451 ~~~R~~~~~~-~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~ 504 (509)
T smart00350 451 VDLRKEDSQS-EARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLL 504 (509)
T ss_pred HHhccccccc-ccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 9999865421 01134789999999999999999999999999999999999985
No 11
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-36 Score=253.73 Aligned_cols=189 Identities=21% Similarity=0.307 Sum_probs=163.7
Q ss_pred CcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC-CCCCCCCc-----c---
Q psy7187 2 EGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV-FGRWDDTK-----G--- 72 (214)
Q Consensus 2 ~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~-~g~~~~~~-----~--- 72 (214)
+||+++||||||+|+||+.+|+++++++|+||||+|+|+|+|++..++|||+|++++||||| ||++.... +
T Consensus 275 ~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~ 354 (490)
T COG0606 275 RPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQ 354 (490)
T ss_pred CCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999 89876432 1
Q ss_pred --cccccCCCCCCCcccEEEEecCCC---------CccccHHHHHHHHHHHHhhcccCCcC-CCCCCChHHHHHHHHHhH
Q psy7187 73 --EQNIDFMPTILSRFDMIFIIKDEH---------DETRDITLAKHIMKVHMTAGQEIDVA-SDGELPLPVLKKYINYCR 140 (214)
Q Consensus 73 --~~~~~l~~~lldRFDL~~~~~~~~---------~~~~d~~ia~~il~~~~~~~~~~~~~-~~~~l~~~~l~~~i~~ar 140 (214)
.|+.+||+||+|||||.+.+...+ ..+....++.+|..++..+..+.... .|..++.+.|++|+
T Consensus 355 ~~~Y~~klSgp~lDRiDl~vev~~~~~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~---- 430 (490)
T COG0606 355 IKRYLNKLSGPFLDRIDLMVEVPRLSAGELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFC---- 430 (490)
T ss_pred HHHHHHHhhHHHHhhhhheecccCCCHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhc----
Confidence 477899999999999999987653 23467899999999887765554222 47888999999973
Q ss_pred hccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 141 MRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 141 ~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
.++.++.+++...... +++|.|.++.++|+|+++|+|++.+.|...|+.+|+++
T Consensus 431 -----~L~~~~~~~L~~al~~--------------~~lS~R~~~rILKvarTiADL~g~~~i~~~hl~eAi~y 484 (490)
T COG0606 431 -----ALQREDADLLKAALER--------------LGLSARAYHRILKVARTIADLEGSEQIERSHLAEAISY 484 (490)
T ss_pred -----ccCHhHHHHHHHHHHh--------------cchhHHHHHHHHHHHhhhhcccCcchhhHHHHHHHHhh
Confidence 3788888888774432 67899999999999999999999999999999999974
No 12
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=100.00 E-value=7.6e-35 Score=256.00 Aligned_cols=189 Identities=19% Similarity=0.310 Sum_probs=164.9
Q ss_pred CcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC-CCCCCCC-----cc---
Q psy7187 2 EGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV-FGRWDDT-----KG--- 72 (214)
Q Consensus 2 ~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~-~g~~~~~-----~~--- 72 (214)
+||++.+||+|||||||+++|++++++.|+++||+|.|+|.|.|...++|++|.+|||+||| ||+|+.. ++
T Consensus 287 ~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~ 366 (499)
T TIGR00368 287 LPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQ 366 (499)
T ss_pred chhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999 9999642 22
Q ss_pred --cccccCCCCCCCcccEEEEecCCC--------CccccHHHHHHHHHHHHhhcccCCc----CCCCCCChHHHHHHHHH
Q psy7187 73 --EQNIDFMPTILSRFDMIFIIKDEH--------DETRDITLAKHIMKVHMTAGQEIDV----ASDGELPLPVLKKYINY 138 (214)
Q Consensus 73 --~~~~~l~~~lldRFDL~~~~~~~~--------~~~~d~~ia~~il~~~~~~~~~~~~----~~~~~l~~~~l~~~i~~ 138 (214)
.|+.++|+||+|||||++.+.+.. ..+++..++++|...+..+..++.. ..|+.++...+++|
T Consensus 367 ~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~--- 443 (499)
T TIGR00368 367 ISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQF--- 443 (499)
T ss_pred HHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhh---
Confidence 467799999999999999988642 2356788999999888777555321 23788899999987
Q ss_pred hHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 139 CRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 139 ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
+ .+++++.+++.++|.. .++|.|+.++++|+|||+|+|++++.|+.+|+.+|+++
T Consensus 444 ----~--~l~~~~~~~l~~a~~~--------------~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~~ 498 (499)
T TIGR00368 444 ----C--KLSAIDANDLEGALNK--------------LGLSSRATHRILKVARTIADLKEEKNISREHLAEAIEY 498 (499)
T ss_pred ----c--CCCHHHHHHHHHHHHh--------------cCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhc
Confidence 3 3799999999988864 46899999999999999999999999999999999975
No 13
>PRK09862 putative ATP-dependent protease; Provisional
Probab=100.00 E-value=9.1e-35 Score=254.67 Aligned_cols=188 Identities=19% Similarity=0.316 Sum_probs=160.0
Q ss_pred CcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC-CCCCCCC-c--c-----
Q psy7187 2 EGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV-FGRWDDT-K--G----- 72 (214)
Q Consensus 2 ~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~-~g~~~~~-~--~----- 72 (214)
+||++.+||||+||+||+++|++++++.|+++||+|.++|.+.|...++|++|.+|||+||| ||+|+.. + +
T Consensus 286 ~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~ 365 (506)
T PRK09862 286 GPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTL 365 (506)
T ss_pred hhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999 8988642 2 2
Q ss_pred cccccCCCCCCCcccEEEEecCCC---------CccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhcc
Q psy7187 73 EQNIDFMPTILSRFDMIFIIKDEH---------DETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRC 143 (214)
Q Consensus 73 ~~~~~l~~~lldRFDL~~~~~~~~---------~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~ 143 (214)
.|+.+||+|+||||||.+.+.... +.+....+.++|...+..+..+. ...+..++...+++|+
T Consensus 366 ~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~-~~~n~~l~~~~l~~~~------- 437 (506)
T PRK09862 366 RYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQ-NKLNAWLDSPEIRQFC------- 437 (506)
T ss_pred HHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHH-HHHhcccCHHHHHHHh-------
Confidence 467799999999999999988652 23556678888887665543331 2336677778888774
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 144 GPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 144 ~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
.+++++.+++..+|.. .++|+|+..+++|+|||+|+|+++++|+++|+.+|+.+
T Consensus 438 --~l~~~~~~~l~~~~~~--------------~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~y 491 (506)
T PRK09862 438 --KLESEDARWLEETLIH--------------LGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSY 491 (506)
T ss_pred --CCCHHHHHHHHHHHHH--------------cCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 3788999999888754 56899999999999999999999999999999999875
No 14
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.96 E-value=1.3e-28 Score=219.89 Aligned_cols=164 Identities=16% Similarity=0.181 Sum_probs=132.6
Q ss_pred CCcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCC
Q psy7187 1 MEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMP 80 (214)
Q Consensus 1 ~~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~ 80 (214)
++||+|.+||+||||+||+|++++.++++|+|+||+|+|+|+|+|.++++|++|.|||+.||.. |...||+
T Consensus 84 ~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~---------~~~~L~~ 154 (584)
T PRK13406 84 AQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAE---------EDERAPA 154 (584)
T ss_pred CCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChh---------cccCCCH
Confidence 4799999999999999999999999999999999999999999999999999999999988751 2346999
Q ss_pred CCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhcc-CCCCCHHHHHHHHHHH
Q psy7187 81 TILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRC-GPRLTHEAGEKLKNRY 159 (214)
Q Consensus 81 ~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~-~p~ls~ea~~~i~~~y 159 (214)
+|+|||||.+.+......+.. . ...+.+ -|.-||+.+ +..++++..+++...+
T Consensus 155 ~lLDRf~l~v~v~~~~~~~~~-------------~---------~~~~~~----~I~~AR~rl~~v~v~~~~l~~i~~~~ 208 (584)
T PRK13406 155 ALADRLAFHLDLDGLALRDAR-------------E---------IPIDAD----DIAAARARLPAVGPPPEAIAALCAAA 208 (584)
T ss_pred HhHhheEEEEEcCCCChHHhc-------------c---------cCCCHH----HHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 999999999998765432210 0 011111 222223211 3467888888888776
Q ss_pred HHHhcCCCcCCCCcccccc-CHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 160 VLMRNGSKEDGEKKLNIPI-TVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 160 ~~~r~~~~~~~~~~~~~~~-s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
.. .++ |+|+...++|+|+|+|+|+++++|+.+||.+|+.+
T Consensus 209 ~~--------------~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~l 249 (584)
T PRK13406 209 AA--------------LGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARL 249 (584)
T ss_pred HH--------------hCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 54 455 99999999999999999999999999999999875
No 15
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.95 E-value=3.8e-29 Score=195.00 Aligned_cols=94 Identities=23% Similarity=0.376 Sum_probs=55.5
Q ss_pred CcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC-CCCCCC-C--c--c---
Q psy7187 2 EGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV-FGRWDD-T--K--G--- 72 (214)
Q Consensus 2 ~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~-~g~~~~-~--~--~--- 72 (214)
+||++++||+||||+||+++|++.++++|+++||+|.|+|+|+|.++++||+|++||||||| ||+|.. . + +
T Consensus 98 ~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~ 177 (206)
T PF01078_consen 98 RPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQ 177 (206)
T ss_dssp EE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S-------------------
T ss_pred CcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999 898752 1 1 2
Q ss_pred --cccccCCCCCCCcccEEEEecCC
Q psy7187 73 --EQNIDFMPTILSRFDMIFIIKDE 95 (214)
Q Consensus 73 --~~~~~l~~~lldRFDL~~~~~~~ 95 (214)
.|+.+||+||+|||||.+.+...
T Consensus 178 ~~~Y~~rlsgpllDRiDi~v~~~~~ 202 (206)
T PF01078_consen 178 IRRYQSRLSGPLLDRIDIHVEVPRV 202 (206)
T ss_dssp -------------------------
T ss_pred ccccccccccccccccccccccccc
Confidence 68889999999999999987643
No 16
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.95 E-value=2.6e-27 Score=214.81 Aligned_cols=182 Identities=16% Similarity=0.218 Sum_probs=149.6
Q ss_pred CcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCC
Q psy7187 2 EGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPT 81 (214)
Q Consensus 2 ~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~ 81 (214)
++|.|.+||+|||||||+++|++++++.|+++|++|++++++.|.+.++|++|.||||+||+.|. |+.+
T Consensus 118 ~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~-----------l~~~ 186 (633)
T TIGR02442 118 QPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGD-----------LRPQ 186 (633)
T ss_pred cCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCC-----------CCHH
Confidence 68999999999999999999999999999999999999999999999999999999999998775 8999
Q ss_pred CCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCC--ChHHHHHHHHHhHhccC-CCCCHHHHHHHHHH
Q psy7187 82 ILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGEL--PLPVLKKYINYCRMRCG-PRLTHEAGEKLKNR 158 (214)
Q Consensus 82 lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l--~~~~l~~~i~~ar~~~~-p~ls~ea~~~i~~~ 158 (214)
|+|||+|.+.+....+.+.+.++..+.+...... ......| ....+.++|..++.... +.+++++.++|..+
T Consensus 187 L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~-----~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~ 261 (633)
T TIGR02442 187 LLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADP-----EAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISEL 261 (633)
T ss_pred HHhhcceEEEccCCCchHHHHHHHHHHHhhccCc-----HHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 9999999998887665555555554443321110 0011122 23467788988987532 46799999999999
Q ss_pred HHHHhcCCCcCCCCcccccc-CHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 159 YVLMRNGSKEDGEKKLNIPI-TVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 159 y~~~r~~~~~~~~~~~~~~~-s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
+..+ ++ ++|+...++|+|+|+|+|++|++|+++|+.+|+++
T Consensus 262 ~~~~--------------~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~l 303 (633)
T TIGR02442 262 CIEF--------------GVDGHRADIVMARAARALAALDGRRRVTAEDVREAAEL 303 (633)
T ss_pred HHHh--------------CCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 9764 33 68999999999999999999999999999999876
No 17
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.95 E-value=1.1e-26 Score=208.87 Aligned_cols=179 Identities=15% Similarity=0.173 Sum_probs=150.1
Q ss_pred CCcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCC--CCCCCCcccccccC
Q psy7187 1 MEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVF--GRWDDTKGEQNIDF 78 (214)
Q Consensus 1 ~~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~--g~~~~~~~~~~~~l 78 (214)
++||.|..||||++||||++.+++++++.|+++|++|+|++.|.|.+.++|++|.||||+||+. | .|
T Consensus 75 ~~~G~L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g-----------~L 143 (589)
T TIGR02031 75 TQPGLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGG-----------GL 143 (589)
T ss_pred CCCCCeeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccC-----------CC
Confidence 4689999999999999999999999999999999999999999999999999999999999984 4 39
Q ss_pred CCCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccC-CCCCHHHHHHHHH
Q psy7187 79 MPTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCG-PRLTHEAGEKLKN 157 (214)
Q Consensus 79 ~~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~-p~ls~ea~~~i~~ 157 (214)
+++|+|||++++.+...++......|.++.+.... .....+...++++|..+|+.+. ..+++++.++|..
T Consensus 144 ~~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~---------~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~ 214 (589)
T TIGR02031 144 PDHLLDRLALHVSLEDVASQDLRVEIVRRERCNEV---------FRMNDELELLRGQIEAARELLPQVTISAEQVKELVL 214 (589)
T ss_pred CHHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhh---------hhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHH
Confidence 99999999999988877765555555555442111 0112345678889999998533 3679999999999
Q ss_pred HHHHHhcCCCcCCCCcccccc-CHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 158 RYVLMRNGSKEDGEKKLNIPI-TVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 158 ~y~~~r~~~~~~~~~~~~~~~-s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
++..+ ++ ++|+...++|+|+|+|.|++|++|+++||.+|+.+
T Consensus 215 ~~~~~--------------gv~s~Ra~i~~~r~ArA~Aal~gr~~V~~~Dv~~a~~l 257 (589)
T TIGR02031 215 TAASL--------------GISGHRADLFAVRAAKAHAALHGRTEVTEEDLKLAVEL 257 (589)
T ss_pred HHHHc--------------CCCCccHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 98653 23 58999999999999999999999999999999875
No 18
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.94 E-value=1.2e-26 Score=195.73 Aligned_cols=184 Identities=17% Similarity=0.204 Sum_probs=144.5
Q ss_pred CCcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCC
Q psy7187 1 MEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMP 80 (214)
Q Consensus 1 ~~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~ 80 (214)
++||.|..||+||+++||+|.+++.+++.|+++|++|+.+|++.|++.++|++|.+||||||.+|. |.+
T Consensus 135 f~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGe-----------Lrp 203 (423)
T COG1239 135 FQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGE-----------LRP 203 (423)
T ss_pred cCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccc-----------cch
Confidence 589999999999999999999999999999999999999999999999999999999999999886 999
Q ss_pred CCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCC--ChHHHHHHHHHhHhccC-CCCCHHHHHHHHH
Q psy7187 81 TILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGEL--PLPVLKKYINYCRMRCG-PRLTHEAGEKLKN 157 (214)
Q Consensus 81 ~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l--~~~~l~~~i~~ar~~~~-p~ls~ea~~~i~~ 157 (214)
+|+|||++.+-+.-+.+.+....|.++.+... ..+ +..-..| ....+|..|.-||+-+. ..+++.+..++..
T Consensus 204 qLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~----~~P-e~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~ 278 (423)
T COG1239 204 QLLDRFGLEVDTHYPLDLEERVEIIRRRLAFE----AVP-EAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAE 278 (423)
T ss_pred hhHhhhcceeeccCCCCHHHHHHHHHHHHHhh----cCc-HHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHH
Confidence 99999999998876666555555544444431 000 0111112 23456666666766321 3567788888877
Q ss_pred HHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 158 RYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 158 ~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
....+-- -+.|+...+.|+|+|+|.+.|+.+|+.+|+.+|+.|
T Consensus 279 ~~~~~~v-------------~g~radi~~~r~a~a~aa~~Gr~~v~~~Di~~a~~l 321 (423)
T COG1239 279 LCARLAV-------------DGHRADIVVVRAAKALAALRGRTEVEEEDIREAAEL 321 (423)
T ss_pred HHHHhcc-------------CCCchhhHHHHHHHHHHHhcCceeeehhhHHHHHhh
Confidence 6654311 137888899999999999999999999999999875
No 19
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.93 E-value=1.9e-25 Score=188.08 Aligned_cols=184 Identities=15% Similarity=0.152 Sum_probs=143.7
Q ss_pred CCcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCC
Q psy7187 1 MEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMP 80 (214)
Q Consensus 1 ~~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~ 80 (214)
+++|.+..||+|++|+||++.++++.++.|+++|++|.+++.+.|.+..+|++|.++|++||..|. |++
T Consensus 122 ~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~-----------l~~ 190 (337)
T TIGR02030 122 FEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGE-----------LRP 190 (337)
T ss_pred eecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCC-----------CCH
Confidence 478999999999999999999999999999999999999999999999999999999999998775 899
Q ss_pred CCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCC--ChHHHHHHHHHhHhccC-CCCCHHHHHHHHH
Q psy7187 81 TILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGEL--PLPVLKKYINYCRMRCG-PRLTHEAGEKLKN 157 (214)
Q Consensus 81 ~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l--~~~~l~~~i~~ar~~~~-p~ls~ea~~~i~~ 157 (214)
+|+|||.+.+.+....+.+...+| ++......... ......+ ....+.+.|..+|+.+. ..+++++.+++..
T Consensus 191 ~LldRf~l~i~l~~p~~~eer~eI----L~~~~~~~~~~-~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~ 265 (337)
T TIGR02030 191 QLLDRFGLHAEIRTVRDVELRVEI----VERRTEYDADP-HAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAE 265 (337)
T ss_pred HHHhhcceEEECCCCCCHHHHHHH----HHhhhhcccCc-hhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHH
Confidence 999999998888766443333333 33221110000 0000011 12345667777776432 4689999999999
Q ss_pred HHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 158 RYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 158 ~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
.+..+|. -|+|+...++|.|+|+|.|++|++|+++||+.|+.+
T Consensus 266 l~~~~~~-------------~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~ 308 (337)
T TIGR02030 266 LCAELDV-------------DGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVL 308 (337)
T ss_pred HHHHHCC-------------CCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 9877542 168999999999999999999999999999998764
No 20
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.93 E-value=2.4e-25 Score=187.56 Aligned_cols=184 Identities=14% Similarity=0.172 Sum_probs=142.9
Q ss_pred CCcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCC
Q psy7187 1 MEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMP 80 (214)
Q Consensus 1 ~~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~ 80 (214)
+++|.|..||+|++|+||++.++++.++.|+++|++|++++.|.|.+..+|++|.++|++||.+|. |++
T Consensus 135 ~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~-----------l~~ 203 (350)
T CHL00081 135 FEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGE-----------LRP 203 (350)
T ss_pred ccCCeeeecCCCEEEecChHhCCHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCC-----------CCH
Confidence 379999999999999999999999999999999999999999999999999999999999998775 899
Q ss_pred CCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCC--ChHHHHHHHHHhHhccC-CCCCHHHHHHHHH
Q psy7187 81 TILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGEL--PLPVLKKYINYCRMRCG-PRLTHEAGEKLKN 157 (214)
Q Consensus 81 ~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l--~~~~l~~~i~~ar~~~~-p~ls~ea~~~i~~ 157 (214)
.|+|||.|.+.+....+.+...+|.++.... .... ......+ .......-|.-+|+.+. ..++++..++|.+
T Consensus 204 ~LldRf~l~i~l~~~~~~~~e~~il~~~~~~----~~~~-~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~ 278 (350)
T CHL00081 204 QLLDRFGMHAEIRTVKDPELRVKIVEQRTSF----DKNP-QEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQ 278 (350)
T ss_pred HHHHHhCceeecCCCCChHHHHHHHHhhhcc----ccCh-hhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 9999999999988765545554444332210 0000 0000000 01113334444554332 5789999999999
Q ss_pred HHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 158 RYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 158 ~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
....+|. .|+|+...++|.|+|+|.|++|++|+++||+.++.+
T Consensus 279 l~~~~~~-------------~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~ 321 (350)
T CHL00081 279 ICSELDV-------------DGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITL 321 (350)
T ss_pred HHHHHCC-------------CCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 9887643 279999999999999999999999999999998764
No 21
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.93 E-value=7.7e-25 Score=184.01 Aligned_cols=183 Identities=15% Similarity=0.188 Sum_probs=139.2
Q ss_pred CCcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCC
Q psy7187 1 MEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMP 80 (214)
Q Consensus 1 ~~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~ 80 (214)
++||.+..||+|++|+||+|.++++.++.|+++|++|.+++++.|.++.+|++|.++|++||..|. +++
T Consensus 119 ~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~-----------l~~ 187 (334)
T PRK13407 119 FEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGE-----------LRP 187 (334)
T ss_pred ecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCC-----------CCH
Confidence 469999999999999999999999999999999999999999999999999999999999998665 899
Q ss_pred CCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCC--ChHHHHHHHHHhHhcc-CCCCCHHHHHHHHH
Q psy7187 81 TILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGEL--PLPVLKKYINYCRMRC-GPRLTHEAGEKLKN 157 (214)
Q Consensus 81 ~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l--~~~~l~~~i~~ar~~~-~p~ls~ea~~~i~~ 157 (214)
+|+|||.+.+.+..+.+.+...++..+ ........ ......+ .......-|..+|+.+ ...++++..++|.+
T Consensus 188 aLldRF~~~v~v~~~~~~~e~~~il~~----~~~~~~~~-~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~ 262 (334)
T PRK13407 188 QLLDRFGLSVEVRSPRDVETRVEVIRR----RDAYDADH-DAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAA 262 (334)
T ss_pred HHHhhcceEEEcCCCCcHHHHHHHHHH----hhcccccc-hhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHH
Confidence 999999999988655543433333322 21110000 0010011 1112223344444432 24689999999999
Q ss_pred HHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 158 RYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 158 ~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
....+|.. |+|+...++|.|+|+|.+++|++|+++|++.+..
T Consensus 263 l~~~~~~~-------------s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~ 304 (334)
T PRK13407 263 LCIALGSD-------------GLRGELTLLRAARALAAFEGAEAVGRSHLRSVAT 304 (334)
T ss_pred HHHHHCCC-------------CchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHH
Confidence 98776532 6899999999999999999999999999988764
No 22
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.76 E-value=3.5e-17 Score=142.29 Aligned_cols=178 Identities=11% Similarity=0.062 Sum_probs=128.5
Q ss_pred cceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCC
Q psy7187 3 GGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTI 82 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~l 82 (214)
+|.+..|+ ++|+|||++++++++++|+++|+++.+++ +|.+..+|.+|.++|+ ||... ...+-.++
T Consensus 102 ~G~L~~A~--lLfLDEI~rasp~~QsaLLeam~Er~~t~--g~~~~~lp~rfiv~AT-N~LPE---------~g~~leAL 167 (498)
T PRK13531 102 SGYLPEAE--IVFLDEIWKAGPAILNTLLTAINERRFRN--GAHEEKIPMRLLVTAS-NELPE---------ADSSLEAL 167 (498)
T ss_pred CCcccccc--EEeecccccCCHHHHHHHHHHHHhCeEec--CCeEEeCCCcEEEEEC-CCCcc---------cCCchHHh
Confidence 45455555 89999999999999999999999999998 8889999999999888 88421 00144699
Q ss_pred CCcccEEEEecCCCC-ccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHH
Q psy7187 83 LSRFDMIFIIKDEHD-ETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVL 161 (214)
Q Consensus 83 ldRFDL~~~~~~~~~-~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~ 161 (214)
+||| ++-+..++++ .+.... ++.......... ......++.+.+......+++ ..+++...++|.+....
T Consensus 168 ~DRF-liri~vp~l~~~~~e~~----lL~~~~~~~~~~-~~~~~vis~eel~~lq~~v~~---V~v~d~v~eyI~~L~~~ 238 (498)
T PRK13531 168 YDRM-LIRLWLDKVQDKANFRS----MLTSQQDENDNP-VPASLQITDEEYQQWQKEIGK---ITLPDHVFELIFQLRQQ 238 (498)
T ss_pred HhhE-EEEEECCCCCchHHHHH----HHHcccccccCC-CcccCCCCHHHHHHHHHHhcc---eeCCHHHHHHHHHHHHH
Confidence 9999 5444444443 222122 333221100010 112345777888777766665 36899999999988877
Q ss_pred HhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHH
Q psy7187 162 MRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEA 210 (214)
Q Consensus 162 ~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~A 210 (214)
+|.... ...+|+|....++++++|+|.++||++|+++|+..|
T Consensus 239 lr~~r~-------~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~ll 280 (498)
T PRK13531 239 LDALPN-------APYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLILL 280 (498)
T ss_pred HhcCCC-------CCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHHHh
Confidence 665442 134899999999999999999999999999999844
No 23
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.76 E-value=8.5e-18 Score=151.84 Aligned_cols=169 Identities=22% Similarity=0.282 Sum_probs=128.6
Q ss_pred CCcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecc-----e---EEEEeCceEEEEeecCCCCCCCCCcc
Q psy7187 1 MEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAG-----I---TTTLNSRCSVLAAANSVFGRWDDTKG 72 (214)
Q Consensus 1 ~~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g-----~---~~~lpa~~~viaa~Np~~g~~~~~~~ 72 (214)
++||.|..||||++||||++.+++..+..|+++|++|++++.... . ....|+++.||+++||..
T Consensus 208 i~~G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~-------- 279 (608)
T TIGR00764 208 VEAGAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDD-------- 279 (608)
T ss_pred CCCCceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHH--------
Confidence 479999999999999999999999999999999999999995531 1 235789999999999962
Q ss_pred cccccCCCCCCCccc---EEEEecCCCCc--cccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhc-cCCC
Q psy7187 73 EQNIDFMPTILSRFD---MIFIIKDEHDE--TRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMR-CGPR 146 (214)
Q Consensus 73 ~~~~~l~~~lldRFD---L~~~~~~~~~~--~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~-~~p~ 146 (214)
...+.++|++||+ +.+.+.+..+. +....++.++.+. ++.+ ..|.
T Consensus 280 --l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~---------------------------~~r~G~l~~ 330 (608)
T TIGR00764 280 --LEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQE---------------------------VKKDGRIPH 330 (608)
T ss_pred --HhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHH---------------------------HHHhCCCCc
Confidence 2248899999999 66666544332 2222233322221 1221 2467
Q ss_pred CCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 147 LTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 147 ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
+++++...|.++|... .+ ....++++.|.+..++|.|.++|+.++++.|+.+||.+|++.
T Consensus 331 ~s~~Av~~Li~~~~R~--ag-----~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~ 390 (608)
T TIGR00764 331 FTRDAVEEIVREAQRR--AG-----RKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKL 390 (608)
T ss_pred CCHHHHHHHHHHHHHH--Hh-----cccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHH
Confidence 9999999999887542 22 122468899999999999999999999999999999999763
No 24
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.60 E-value=1.1e-14 Score=123.22 Aligned_cols=188 Identities=16% Similarity=0.166 Sum_probs=130.6
Q ss_pred CcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceE-EEEeCceEEEEeecCCCCCCCCCcccccccCCC
Q psy7187 2 EGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGIT-TTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMP 80 (214)
Q Consensus 2 ~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~-~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~ 80 (214)
.+|-+..+.++|+++||||+.+++++++|+++|+++.+++ .|.. +.+|..|.|+||+||.+.. ....|+.
T Consensus 104 ~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv--~~~~~~~~~~~f~viaT~Np~e~~-------g~~~l~e 174 (329)
T COG0714 104 VPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTV--PGLTTIRLPPPFIVIATQNPGEYE-------GTYPLPE 174 (329)
T ss_pred ecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEE--CCcCCcCCCCCCEEEEccCccccC-------CCcCCCH
Confidence 4677778888999999999999999999999999999999 6666 8999999999999997321 2235899
Q ss_pred CCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhccc-CCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHH
Q psy7187 81 TILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQE-IDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRY 159 (214)
Q Consensus 81 ~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~-~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y 159 (214)
+++|||-+ ....+.++....+. .+.......... ........++...+.+.-...+ ...++++..+++...+
T Consensus 175 A~ldRf~~-~~~v~yp~~~~e~~---~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~ 247 (329)
T COG0714 175 ALLDRFLL-RIYVDYPDSEEEER---IILARVGGVDELDLESLVKPVLSDEELLRLQKEVK---KVPVSDEVIDYIVTLV 247 (329)
T ss_pred HHHhhEEE-EEecCCCCchHHHH---HHHHhCccccccccchhhhhhhCHHHHHHHHhhhc---cCCchHHHHHHHHHHH
Confidence 99999954 44445553332221 122221110100 0011122333333333222221 3457889999988888
Q ss_pred HHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHH
Q psy7187 160 VLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEAL 211 (214)
Q Consensus 160 ~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai 211 (214)
...|.... ...+.++|....++..+++.|.+.++..+.++|+....
T Consensus 248 ~~~~~~~~------~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~~~ 293 (329)
T COG0714 248 AALREAPD------VALGASPRASLALLAALRALALLDGRDAVIPDDVKALA 293 (329)
T ss_pred Hhhccccc------hhccCCchhHHHHHHHHHhhhhhcCccccCHHHHHHHh
Confidence 77665432 23678999999999999999999999999999987654
No 25
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.55 E-value=1.1e-13 Score=125.18 Aligned_cols=166 Identities=21% Similarity=0.308 Sum_probs=122.8
Q ss_pred CCcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEec----ce----EEEEeCceEEEEeecCCCCCCCCCcc
Q psy7187 1 MEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKA----GI----TTTLNSRCSVLAAANSVFGRWDDTKG 72 (214)
Q Consensus 1 ~~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~----g~----~~~lpa~~~viaa~Np~~g~~~~~~~ 72 (214)
++||.|..||||++||||++.|++..+..|+++|++|++.+... +. ....|+++.||+++||.-
T Consensus 217 i~~G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~l-------- 288 (637)
T PRK13765 217 VEAGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDA-------- 288 (637)
T ss_pred CCCCceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCH--------
Confidence 58999999999999999999999999999999999999988422 11 456899999999999951
Q ss_pred cccccCCCCCCCccc---EEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhcc-----C
Q psy7187 73 EQNIDFMPTILSRFD---MIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRC-----G 144 (214)
Q Consensus 73 ~~~~~l~~~lldRFD---L~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~-----~ 144 (214)
...+.+.|.+||. .-+.+.+..+ .+.+..++|+.++.+.+ .
T Consensus 289 --l~~~dpdL~~rfk~~~v~v~f~~~~~-----------------------------d~~e~~~~~~~~iaqe~~~~G~l 337 (637)
T PRK13765 289 --LENMHPALRSRIKGYGYEVYMRDTME-----------------------------DTPENRRKLVRFVAQEVKRDGKI 337 (637)
T ss_pred --HHhhhHHHHHHhccCeEEEEcccccC-----------------------------CCHHHHHHHHHHHHHHhhhccCC
Confidence 1124566777775 3333322221 12334444554443221 4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 145 PRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 145 p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
|.++++|...|.++|.. ..+. ...+.+..|.+..|+|.|-.+|+...++.|+.+||..|+.
T Consensus 338 ~~f~~eAVa~LI~~~~R--~ag~-----r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~ 398 (637)
T PRK13765 338 PHFDRDAVEEIIREAKR--RAGR-----KGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKK 398 (637)
T ss_pred CCCCHHHHHHHHHHHHH--HhCC-----ccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHH
Confidence 67999999999999864 2222 2235677899999999999999999999999999998863
No 26
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.53 E-value=7.3e-15 Score=106.27 Aligned_cols=67 Identities=27% Similarity=0.361 Sum_probs=51.6
Q ss_pred CceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcc
Q psy7187 11 GGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRF 86 (214)
Q Consensus 11 ~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRF 86 (214)
.+|+++||||+.+++++++|+|+|++++|++ .|.++.+|..|.||||+||.+.. ..+.||.+++|||
T Consensus 63 ~~ill~DEiNrappktQsAlLeam~Er~Vt~--~g~~~~lp~pf~ViATqNp~e~~-------Gty~Lpea~~DRF 129 (131)
T PF07726_consen 63 TNILLADEINRAPPKTQSALLEAMEERQVTI--DGQTYPLPDPFFVIATQNPVEQE-------GTYPLPEAQLDRF 129 (131)
T ss_dssp SSEEEEETGGGS-HHHHHHHHHHHHHSEEEE--TTEEEE--SS-EEEEEE-TT--S-------------HHHHTTS
T ss_pred hceeeecccccCCHHHHHHHHHHHHcCeEEe--CCEEEECCCcEEEEEecCccccC-------ceecCCHHHhccc
Confidence 4799999999999999999999999999999 99999999999999999997321 2346999999999
No 27
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.49 E-value=4.8e-13 Score=109.78 Aligned_cols=154 Identities=12% Similarity=0.195 Sum_probs=107.5
Q ss_pred cceeec--cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEec---ceEEEEeCceEEEEeecCCCCCCCCCccccccc
Q psy7187 3 GGAMVL--ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKA---GITTTLNSRCSVLAAANSVFGRWDDTKGEQNID 77 (214)
Q Consensus 3 ~G~l~l--a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~---g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~ 77 (214)
+|.+.. ++||++++||++++++++++.|+++|++|.+++... +.....+.+|.||+|+||... .....
T Consensus 96 ~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~-------~g~~~ 168 (262)
T TIGR02640 96 DNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEY-------AGVHE 168 (262)
T ss_pred CchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccc-------cceec
Confidence 566654 688999999999999999999999999999998532 345667789999999999621 01224
Q ss_pred CCCCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHH
Q psy7187 78 FMPTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKN 157 (214)
Q Consensus 78 l~~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~ 157 (214)
++.+|++|| ..+.+ +.++.+...+ |+..+ + .++++..+.+.+
T Consensus 169 l~~aL~~R~-~~i~i-~~P~~~~e~~----Il~~~------------------------------~--~~~~~~~~~iv~ 210 (262)
T TIGR02640 169 TQDALLDRL-ITIFM-DYPDIDTETA----ILRAK------------------------------T--DVAEDSAATIVR 210 (262)
T ss_pred ccHHHHhhc-EEEEC-CCCCHHHHHH----HHHHh------------------------------h--CCCHHHHHHHHH
Confidence 689999998 44444 4555443322 23321 1 246677788888
Q ss_pred HHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHH
Q psy7187 158 RYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEAL 211 (214)
Q Consensus 158 ~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai 211 (214)
.+..+|.... ...+++|+...+.| +.+.+.++..|+++|+....
T Consensus 211 ~~~~~R~~~~-------~~~~~~r~~i~~~~---~~~~~~~~~~~~~~~~~~~~ 254 (262)
T TIGR02640 211 LVREFRASGD-------EITSGLRASLMIAE---VATQQDIPVDVDDEDFVDLC 254 (262)
T ss_pred HHHHHHhhCC-------ccCCcHHHHHHHHH---HHHHcCCCCCCCcHHHHHHH
Confidence 8888883221 24567887655555 45555779999999998764
No 28
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=99.37 E-value=1e-11 Score=86.34 Aligned_cols=92 Identities=20% Similarity=0.315 Sum_probs=79.1
Q ss_pred cccHHHHHHHHHHHHhhcccCC-cCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccc
Q psy7187 99 TRDITLAKHIMKVHMTAGQEID-VASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIP 177 (214)
Q Consensus 99 ~~d~~ia~~il~~~~~~~~~~~-~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~ 177 (214)
+++..|.++|...+..+..+.. ...|+.++...+++|+ .+++++..++..++.. ..
T Consensus 3 esS~~ir~rV~~Ar~~Q~~R~~~~~~Na~l~~~~l~~~~---------~l~~~~~~~l~~~~~~--------------~~ 59 (96)
T PF13335_consen 3 ESSAEIRERVEAARERQRERYGGIKCNAQLPGEELRKYC---------PLSSEAKKLLEQAAEK--------------LN 59 (96)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCccccCCHHHHHhHc---------CCCHHHHHHHHHHHHH--------------cC
Confidence 4567889999998877766552 2578899999999983 4899999999998864 57
Q ss_pred cCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 178 ITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 178 ~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
+|.|+...++|+|+|+|+|++++.|+.+||.+|+.+
T Consensus 60 lS~R~~~rilrvARTIADL~~~~~I~~~hi~EAl~y 95 (96)
T PF13335_consen 60 LSARGYHRILRVARTIADLEGSERITREHIAEALSY 95 (96)
T ss_pred cCHHHHHHHHHHHHHHHhHcCCCCCCHHHHHHHHhC
Confidence 899999999999999999999999999999999875
No 29
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.31 E-value=3.5e-11 Score=107.78 Aligned_cols=149 Identities=18% Similarity=0.192 Sum_probs=107.8
Q ss_pred CcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecce---------------EEEEeCceEEEEeecCCCCC
Q psy7187 2 EGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGI---------------TTTLNSRCSVLAAANSVFGR 66 (214)
Q Consensus 2 ~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~---------------~~~lpa~~~viaa~Np~~g~ 66 (214)
++|.+..||||++||||+++|++..++.|+.+||++.+.+..+.. ...+|++|.+|+|++....
T Consensus 167 ~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~- 245 (531)
T TIGR02902 167 KPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPE- 245 (531)
T ss_pred cCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcc-
Confidence 478899999999999999999999999999999999988753211 2347999999988765422
Q ss_pred CCCCcccccccCCCCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCC
Q psy7187 67 WDDTKGEQNIDFMPTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPR 146 (214)
Q Consensus 67 ~~~~~~~~~~~l~~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ 146 (214)
.+++++.+|+.- +.+.... .+.-..++++. ++. ....
T Consensus 246 ----------~L~paLrsR~~~-I~f~pL~-~eei~~Il~~~------------------------------a~k-~~i~ 282 (531)
T TIGR02902 246 ----------EIPPALRSRCVE-IFFRPLL-DEEIKEIAKNA------------------------------AEK-IGIN 282 (531)
T ss_pred ----------cCChHHhhhhhe-eeCCCCC-HHHHHHHHHHH------------------------------HHH-cCCC
Confidence 288999999843 3333222 11111221111 111 2346
Q ss_pred CCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 147 LTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 147 ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
+++++.+.|.+|.. +.|.+..+++.|-.+|..+.+..|+.+|+..++.
T Consensus 283 is~~al~~I~~y~~------------------n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 283 LEKHALELIVKYAS------------------NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred cCHHHHHHHHHhhh------------------hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 88898887765321 3588999999999899888899999999999874
No 30
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.7e-11 Score=110.82 Aligned_cols=170 Identities=22% Similarity=0.250 Sum_probs=117.7
Q ss_pred CCcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEE-----ecce---EEEEeCceEEEEeecCCCCCCCCCcc
Q psy7187 1 MEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIA-----KAGI---TTTLNSRCSVLAAANSVFGRWDDTKG 72 (214)
Q Consensus 1 ~~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~-----~~g~---~~~lpa~~~viaa~Np~~g~~~~~~~ 72 (214)
++||++..||||||||||+..+....+..++.+|++++-.+. ..|. .-.+|++|.++++.|++.
T Consensus 216 i~pGaVHkAngGVLiIdei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~-------- 287 (647)
T COG1067 216 VKPGAVHKANGGVLIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNRED-------- 287 (647)
T ss_pred ccCcccccccCcEEEEEhhhhhCcHHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHHH--------
Confidence 579999999999999999999998889999999997644332 1122 334899999999999971
Q ss_pred cccccCCCCCCCcccE---EEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHh-HhccCCCCC
Q psy7187 73 EQNIDFMPTILSRFDM---IFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYC-RMRCGPRLT 148 (214)
Q Consensus 73 ~~~~~l~~~lldRFDL---~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~a-r~~~~p~ls 148 (214)
-..+..++-||.++ ...+.+... ..++.-.+ ....|.... +..=.|.++
T Consensus 288 --l~~l~~~~~~r~~g~~y~ae~~~~m~-~~~~nr~k------------------------~~~~~~q~v~~d~~ip~~~ 340 (647)
T COG1067 288 --LEDLHEPDRSRIEGFGYEAEFEDTMP-ITDANRSK------------------------LVQFYVQELARDGNIPHLD 340 (647)
T ss_pred --HHhhcccCHHHHhhcceEEEEcCCCC-CChHHHHH------------------------HHHHHHHHHHhcCCCCCCC
Confidence 11255555555554 355554433 22221111 111122212 221248899
Q ss_pred HHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 149 HEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 149 ~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
..|.+.|.++.. |+.+. ...+++.+|-+-.|+|.|--+|..++++.++.+||.+|+.
T Consensus 341 ~~Av~~li~~a~--R~Ag~-----~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~ 397 (647)
T COG1067 341 KDAVEELIREAA--RRAGD-----QNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQ 397 (647)
T ss_pred HHHHHHHHHHHH--Hhccc-----cceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHHHHH
Confidence 999888877653 33322 3357899999999999999999999999999999999975
No 31
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.31 E-value=2.2e-11 Score=101.77 Aligned_cols=155 Identities=15% Similarity=0.202 Sum_probs=97.2
Q ss_pred Ccceeec--cCCceEeeccCCCCCHHHHHHHHHhhh-cCeEEEEecceEEEEeCceEEEEeecCCC-CCCCCCcc-cccc
Q psy7187 2 EGGAMVL--ADGGVVCIDEFDKMREDDRVAIHEAME-QQTISIAKAGITTTLNSRCSVLAAANSVF-GRWDDTKG-EQNI 76 (214)
Q Consensus 2 ~~G~l~l--a~~Gv~~iDE~~~~~~~~~~~L~e~me-~~~i~i~~~g~~~~lpa~~~viaa~Np~~-g~~~~~~~-~~~~ 76 (214)
+.|.|.. -+|+++++||+|..+++++..|+..|| .+.++|...+....-...|.|+||+||.. | |..-. ....
T Consensus 124 ~~GpL~~A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~G--d~~G~y~Gt~ 201 (327)
T TIGR01650 124 RDGILPWALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLG--DTTGLYHGTQ 201 (327)
T ss_pred ecCcchhHHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcC--CCCcceeeee
Confidence 3566654 467889999999999999999999999 57999965554444333799999999974 2 11101 3456
Q ss_pred cCCCCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHH
Q psy7187 77 DFMPTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLK 156 (214)
Q Consensus 77 ~l~~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~ 156 (214)
.++.+++||| +++...+.++.+....| +...... .... . +++..+++.
T Consensus 202 ~l~~A~lDRF-~i~~~~~Yp~~e~E~~I----l~~~~~~-------~~~~-~-------------------~~~i~~~mV 249 (327)
T TIGR01650 202 QINQAQMDRW-SIVTTLNYLEHDNEAAI----VLAKAKG-------FDDT-E-------------------GKDIINAMV 249 (327)
T ss_pred cCCHHHHhhe-eeEeeCCCCCHHHHHHH----HHhhccC-------CCcc-c-------------------hHHHHHHHH
Confidence 7999999999 55555566665544432 3221100 0000 1 223344444
Q ss_pred HHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHH
Q psy7187 157 NRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESM 193 (214)
Q Consensus 157 ~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~ 193 (214)
+.....|.... ......++|+|++.++.+.+...
T Consensus 250 ~la~~tR~~~~---~~~i~~~~SpR~li~w~~~~~~f 283 (327)
T TIGR01650 250 RVADMTRNAFI---NGDISTVMSPRTVITWAENAEIF 283 (327)
T ss_pred HHHHHHHhhhc---cCCccccccHHHHHHHHHHHHhh
Confidence 44444443111 11235789999999988887654
No 32
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.12 E-value=9.6e-10 Score=87.09 Aligned_cols=73 Identities=22% Similarity=0.461 Sum_probs=52.7
Q ss_pred ccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEE-ecc---eEEEEe-CceEEEEeecCCCCCCCCCcccccccCCCCC
Q psy7187 8 LADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIA-KAG---ITTTLN-SRCSVLAAANSVFGRWDDTKGEQNIDFMPTI 82 (214)
Q Consensus 8 la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~-~~g---~~~~lp-a~~~viaa~Np~~g~~~~~~~~~~~~l~~~l 82 (214)
+..+-|+||||+.+|++.+++.|+.+||++++.|- ..| .+.+++ .+|++|+|++-. |. |+.||
T Consensus 99 l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~-g~-----------ls~pL 166 (233)
T PF05496_consen 99 LKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRA-GL-----------LSSPL 166 (233)
T ss_dssp --TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSG-CC-----------TSHCC
T ss_pred cCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccc-cc-----------cchhH
Confidence 35678999999999999999999999999999663 333 234433 359999998764 44 99999
Q ss_pred CCcccEEEEe
Q psy7187 83 LSRFDMIFII 92 (214)
Q Consensus 83 ldRFDL~~~~ 92 (214)
.|||.++.-+
T Consensus 167 rdRFgi~~~l 176 (233)
T PF05496_consen 167 RDRFGIVLRL 176 (233)
T ss_dssp CTTSSEEEE-
T ss_pred Hhhcceecch
Confidence 9999988765
No 33
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.90 E-value=7.7e-10 Score=81.96 Aligned_cols=77 Identities=21% Similarity=0.431 Sum_probs=56.9
Q ss_pred Ccceeecc--CCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeC------ceEEEEeecCCCCCCCCCccc
Q psy7187 2 EGGAMVLA--DGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNS------RCSVLAAANSVFGRWDDTKGE 73 (214)
Q Consensus 2 ~~G~l~la--~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa------~~~viaa~Np~~g~~~~~~~~ 73 (214)
++|.++.| +++|++|||+|+.++++++.|+.+++++.+.+...+.....+. .|.+|||+||.. .
T Consensus 55 ~~~~l~~a~~~~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~-~------- 126 (139)
T PF07728_consen 55 KDGPLVRAMRKGGILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD-K------- 126 (139)
T ss_dssp EE-CCCTTHHEEEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST---------
T ss_pred ccccccccccceeEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC-C-------
Confidence 35667755 8999999999999999999999999999999876665555554 499999999975 1
Q ss_pred ccccCCCCCCCcc
Q psy7187 74 QNIDFMPTILSRF 86 (214)
Q Consensus 74 ~~~~l~~~lldRF 86 (214)
...+++.+|+|||
T Consensus 127 ~~~~l~~al~~Rf 139 (139)
T PF07728_consen 127 GRKELSPALLDRF 139 (139)
T ss_dssp -TTTTCHHHHTT-
T ss_pred CcCcCCHHHHhhC
Confidence 2235999999998
No 34
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.79 E-value=8.9e-08 Score=81.08 Aligned_cols=142 Identities=19% Similarity=0.229 Sum_probs=88.7
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEE--ecc----eEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCC
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIA--KAG----ITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTI 82 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~--~~g----~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~l 82 (214)
.+++|+||||++.++....+.|+.+|+...+.+. .+. ....+| .+.+|+++|+... ++++|
T Consensus 101 ~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~-~~~li~at~~~~~------------l~~~L 167 (328)
T PRK00080 101 EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP-PFTLIGATTRAGL------------LTSPL 167 (328)
T ss_pred ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCC-CceEEeecCCccc------------CCHHH
Confidence 5689999999999999999999999998766542 211 122345 4888888888532 78899
Q ss_pred CCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHH
Q psy7187 83 LSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLM 162 (214)
Q Consensus 83 ldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~ 162 (214)
.+||++++.+... +.+ .+ ..++...... ....+++++.++|.+..
T Consensus 168 ~sRf~~~~~l~~~-~~~---e~-~~il~~~~~~---------------------------~~~~~~~~~~~~ia~~~--- 212 (328)
T PRK00080 168 RDRFGIVQRLEFY-TVE---EL-EKIVKRSARI---------------------------LGVEIDEEGALEIARRS--- 212 (328)
T ss_pred HHhcCeeeecCCC-CHH---HH-HHHHHHHHHH---------------------------cCCCcCHHHHHHHHHHc---
Confidence 9999877666432 222 11 1222221111 12346666666665422
Q ss_pred hcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 163 RNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 163 r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
.=++|....+++-.+..|.......|+.+++..++.
T Consensus 213 --------------~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~ 248 (328)
T PRK00080 213 --------------RGTPRIANRLLRRVRDFAQVKGDGVITKEIADKALD 248 (328)
T ss_pred --------------CCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 013466666666666666665556777777777654
No 35
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.70 E-value=2.1e-07 Score=81.33 Aligned_cols=60 Identities=20% Similarity=0.367 Sum_probs=55.0
Q ss_pred CcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC
Q psy7187 2 EGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV 63 (214)
Q Consensus 2 ~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~ 63 (214)
+.|-+-.||||.+|+|||..||-+.+..|+.++++|++. |-|.+.+.+.+.-||||+|-.
T Consensus 227 r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~--rvG~~~~i~vdvRiIaaT~~d 286 (464)
T COG2204 227 RIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFE--RVGGNKPIKVDVRIIAATNRD 286 (464)
T ss_pred cCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeE--ecCCCcccceeeEEEeecCcC
Confidence 368999999999999999999999999999999999975 478888889999999999986
No 36
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.64 E-value=1.3e-06 Score=71.30 Aligned_cols=144 Identities=19% Similarity=0.247 Sum_probs=101.6
Q ss_pred ccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEE--ecc--eEEE--EeCceEEEEeecCCCCCCCCCcccccccCCCC
Q psy7187 8 LADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIA--KAG--ITTT--LNSRCSVLAAANSVFGRWDDTKGEQNIDFMPT 81 (214)
Q Consensus 8 la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~--~~g--~~~~--lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~ 81 (214)
+..|-|+|||||..+++.+-+.|+-+||.-.+-|. ++. .+.. +| .|++|+|+-- .|. |+.|
T Consensus 101 Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp-pFTLIGATTr-~G~-----------lt~P 167 (332)
T COG2255 101 LEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP-PFTLIGATTR-AGM-----------LTNP 167 (332)
T ss_pred CCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCC-CeeEeeeccc-ccc-----------ccch
Confidence 55688999999999999999999999999887664 221 2333 44 5999998855 354 9999
Q ss_pred CCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHH
Q psy7187 82 ILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVL 161 (214)
Q Consensus 82 lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~ 161 (214)
|.|||.++..+.-. +.++++.-|.+. |+ .+...+++++...|.+.
T Consensus 168 LrdRFGi~~rlefY----~~~eL~~Iv~r~---------------------------a~-~l~i~i~~~~a~eIA~r--- 212 (332)
T COG2255 168 LRDRFGIIQRLEFY----TVEELEEIVKRS---------------------------AK-ILGIEIDEEAALEIARR--- 212 (332)
T ss_pred hHHhcCCeeeeecC----CHHHHHHHHHHH---------------------------HH-HhCCCCChHHHHHHHHh---
Confidence 99999998877432 333443333222 11 13456777777776432
Q ss_pred HhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 162 MRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 162 ~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
. +=|||--..|+|=-+-.|..++...|+.+=+..|+..
T Consensus 213 --S------------RGTPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~~ 250 (332)
T COG2255 213 --S------------RGTPRIANRLLRRVRDFAQVKGDGDIDRDIADKALKM 250 (332)
T ss_pred --c------------cCCcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 1 1168888888888888888888888888777777643
No 37
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.62 E-value=8.4e-07 Score=74.20 Aligned_cols=142 Identities=20% Similarity=0.266 Sum_probs=86.3
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEE-ecc-----eEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCC
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIA-KAG-----ITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTI 82 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~-~~g-----~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~l 82 (214)
..++|+||||++.++++..+.|+..|+...+.+- .+| ....+|. +.+++++|.. + .++.++
T Consensus 80 ~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~li~~t~~~-~-----------~l~~~l 146 (305)
T TIGR00635 80 EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPP-FTLVGATTRA-G-----------MLTSPL 146 (305)
T ss_pred ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCC-eEEEEecCCc-c-----------ccCHHH
Confidence 4578999999999999999999999998665432 111 1123343 6677776654 2 278899
Q ss_pred CCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHH
Q psy7187 83 LSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLM 162 (214)
Q Consensus 83 ldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~ 162 (214)
.|||++++.+... +.+. +. .++..... . ....+++++.+.|.+...
T Consensus 147 ~sR~~~~~~l~~l-~~~e---~~-~il~~~~~--------------------------~-~~~~~~~~al~~ia~~~~-- 192 (305)
T TIGR00635 147 RDRFGIILRLEFY-TVEE---LA-EIVSRSAG--------------------------L-LNVEIEPEAALEIARRSR-- 192 (305)
T ss_pred HhhcceEEEeCCC-CHHH---HH-HHHHHHHH--------------------------H-hCCCcCHHHHHHHHHHhC--
Confidence 9999876665433 2221 11 11211111 0 133567777666654320
Q ss_pred hcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 163 RNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 163 r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
. .+|....+++.+...|.......|+.+++..++.
T Consensus 193 -------------G--~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~ 227 (305)
T TIGR00635 193 -------------G--TPRIANRLLRRVRDFAQVRGQKIINRDIALKALE 227 (305)
T ss_pred -------------C--CcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 0 2465666666666666666666788888877764
No 38
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.62 E-value=5.8e-07 Score=82.09 Aligned_cols=77 Identities=18% Similarity=0.275 Sum_probs=58.7
Q ss_pred cceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecce---------------EEEEeCceEEEEeecCCCCCC
Q psy7187 3 GGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGI---------------TTTLNSRCSVLAAANSVFGRW 67 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~---------------~~~lpa~~~viaa~Np~~g~~ 67 (214)
+|.+..++||++||||++.|+...+..|+..|+++.+.+..+.. ...-|+.+.++++++....
T Consensus 258 ~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~-- 335 (615)
T TIGR02903 258 TGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE-- 335 (615)
T ss_pred cCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEecccccc--
Confidence 57778899999999999999999999999999999988764311 1123567788877654322
Q ss_pred CCCcccccccCCCCCCCcccEEE
Q psy7187 68 DDTKGEQNIDFMPTILSRFDMIF 90 (214)
Q Consensus 68 ~~~~~~~~~~l~~~lldRFDL~~ 90 (214)
.++++|.+||..+.
T Consensus 336 ---------~l~~aLrSR~~~i~ 349 (615)
T TIGR02903 336 ---------EINPALRSRCAEVF 349 (615)
T ss_pred ---------ccCHHHHhceeEEE
Confidence 27789999997543
No 39
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.59 E-value=8.3e-08 Score=81.38 Aligned_cols=79 Identities=18% Similarity=0.137 Sum_probs=65.5
Q ss_pred cceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCC-CCCCCCcccccccCCCC
Q psy7187 3 GGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVF-GRWDDTKGEQNIDFMPT 81 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~-g~~~~~~~~~~~~l~~~ 81 (214)
.|.|..||+||+.++|+.+.+.+.+..|+.++++|.+.+. |....+|.+..|||++||.+ ..+ .+.+...+
T Consensus 229 ~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~--~~~~~~~~d~liia~sNe~e~~~~------~~~k~~ea 300 (361)
T smart00763 229 DGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGT--GGFAMIPIDGLIIAHSNESEWQRF------KSNKKNEA 300 (361)
T ss_pred cCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecC--CcccccccceEEEEeCCHHHHhhh------hccccchh
Confidence 4999999999999999999999999999999999999984 44457889999999999972 221 12234699
Q ss_pred CCCcccEE
Q psy7187 82 ILSRFDMI 89 (214)
Q Consensus 82 lldRFDL~ 89 (214)
|+|||..+
T Consensus 301 f~dR~~~i 308 (361)
T smart00763 301 LLDRIIKV 308 (361)
T ss_pred hhhceEEE
Confidence 99999733
No 40
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.59 E-value=2.2e-07 Score=78.74 Aligned_cols=104 Identities=19% Similarity=0.288 Sum_probs=71.7
Q ss_pred CcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCC
Q psy7187 2 EGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPT 81 (214)
Q Consensus 2 ~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~ 81 (214)
++|.+..|+||++||||++.|+.+.+..|+.+++++.+. +.|.....+.++-||+++|..-... .....+...
T Consensus 85 ~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~--~~g~~~~~~~~~RiI~at~~~l~~~-----~~~g~fr~d 157 (329)
T TIGR02974 85 HQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFE--RVGGSQTLQVDVRLVCATNADLPAL-----AAEGRFRAD 157 (329)
T ss_pred cCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEE--ecCCCceeccceEEEEechhhHHHH-----hhcCchHHH
Confidence 367799999999999999999999999999999999864 4566677889999999999851100 112236667
Q ss_pred CCCcccE-EEEecCCCCcccc-HHHHHHHHHHH
Q psy7187 82 ILSRFDM-IFIIKDEHDETRD-ITLAKHIMKVH 112 (214)
Q Consensus 82 lldRFDL-~~~~~~~~~~~~d-~~ia~~il~~~ 112 (214)
|+.||.. .+.++.-.+...| ..++++.+...
T Consensus 158 L~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~ 190 (329)
T TIGR02974 158 LLDRLAFDVITLPPLRERQEDIMLLAEHFAIRM 190 (329)
T ss_pred HHHHhcchhcCCCchhhhhhhHHHHHHHHHHHH
Confidence 7777753 3333332232222 35555655543
No 41
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.58 E-value=2.9e-07 Score=79.07 Aligned_cols=60 Identities=15% Similarity=0.295 Sum_probs=54.1
Q ss_pred CcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC
Q psy7187 2 EGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV 63 (214)
Q Consensus 2 ~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~ 63 (214)
++|.+-.||||.+|+||+..||+..+..|+.+||+|++.- -|.....|.++-+++|+|-.
T Consensus 165 k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~r--vG~~~~~~~dVRli~AT~~~ 224 (403)
T COG1221 165 KAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRR--VGGSQPRPVDVRLICATTED 224 (403)
T ss_pred cCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEe--cCCCCCcCCCceeeeccccC
Confidence 5899999999999999999999999999999999999862 45577889999999999875
No 42
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.54 E-value=1.1e-06 Score=76.57 Aligned_cols=60 Identities=25% Similarity=0.401 Sum_probs=55.7
Q ss_pred CcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC
Q psy7187 2 EGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV 63 (214)
Q Consensus 2 ~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~ 63 (214)
++|-+-+||||-+|+|||.+||-..+..|+-++++|.| +|-|...+++.+.-||||+|-.
T Consensus 309 r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEi--eRvG~~r~ikVDVRiIAATNRD 368 (550)
T COG3604 309 RRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEI--ERVGGDRTIKVDVRVIAATNRD 368 (550)
T ss_pred cCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcce--eecCCCceeEEEEEEEeccchh
Confidence 47888999999999999999999999999999999995 5689899999999999999986
No 43
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.52 E-value=1.3e-06 Score=76.76 Aligned_cols=143 Identities=16% Similarity=0.214 Sum_probs=84.7
Q ss_pred cceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCC
Q psy7187 3 GGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTI 82 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~l 82 (214)
+|.+..|+||++||||++.++...+..|++.++++.++ +-|.....|+++-+|+++++.-... .....+...|
T Consensus 226 ~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~--~~~~~~~~~~~~rii~~~~~~l~~~-----~~~~~~~~~L 298 (445)
T TIGR02915 226 LGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIE--RLGGREEIPVDVRIVCATNQDLKRM-----IAEGTFREDL 298 (445)
T ss_pred CCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEE--eCCCCceeeeceEEEEecCCCHHHH-----HHcCCccHHH
Confidence 67788999999999999999999999999999999864 3555667889999999998851000 0111245555
Q ss_pred CCcccEE-EEecCCCCcccc-HHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHH
Q psy7187 83 LSRFDMI-FIIKDEHDETRD-ITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYV 160 (214)
Q Consensus 83 ldRFDL~-~~~~~~~~~~~d-~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~ 160 (214)
+.|+.-. +.++.-.+...| ..++++.++........ ....++.+.++....| -+|-=-.|..+.+.+...
T Consensus 299 ~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~----~~~~~~~~a~~~L~~~----~wpgNvreL~~~i~~a~~ 370 (445)
T TIGR02915 299 FYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKR----KTKGFTDDALRALEAH----AWPGNVRELENKVKRAVI 370 (445)
T ss_pred HHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCC----CCCCCCHHHHHHHHhC----CCCChHHHHHHHHHHHHH
Confidence 5555422 222222222222 35666666654332111 1123555555544332 123222355566655543
No 44
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.52 E-value=9.2e-07 Score=74.88 Aligned_cols=144 Identities=15% Similarity=0.168 Sum_probs=90.2
Q ss_pred cceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCC
Q psy7187 3 GGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTI 82 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~l 82 (214)
+|.+..|+||.+||||++.++...+..|.+.+++|.+. +.|.....+.++-||++++..-... .....+...|
T Consensus 93 ~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~--~~g~~~~~~~~~RiI~~s~~~l~~l-----~~~g~f~~dL 165 (326)
T PRK11608 93 PGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELE--RVGGSQPLQVNVRLVCATNADLPAM-----VAEGKFRADL 165 (326)
T ss_pred CCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEE--eCCCCceeeccEEEEEeCchhHHHH-----HHcCCchHHH
Confidence 67789999999999999999999999999999999855 4566677888999999998851000 1112366778
Q ss_pred CCccc-EEEEecCCCCcccc-HHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHH
Q psy7187 83 LSRFD-MIFIIKDEHDETRD-ITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYV 160 (214)
Q Consensus 83 ldRFD-L~~~~~~~~~~~~d-~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~ 160 (214)
+.||. +.+.++.-.+...| ..++++.+......... .....++.+.++....| -+|-=-.|.++.+.+.+.
T Consensus 166 ~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~---~~~~~~s~~al~~L~~y----~WPGNvrEL~~vl~~a~~ 238 (326)
T PRK11608 166 LDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGL---PLFPGFTERARETLLNY----RWPGNIRELKNVVERSVY 238 (326)
T ss_pred HHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCC---CCCCCCCHHHHHHHHhC----CCCcHHHHHHHHHHHHHH
Confidence 88884 34445443333333 35666666554322111 00123566655554432 234323366666666554
No 45
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.51 E-value=1.6e-06 Score=78.13 Aligned_cols=102 Identities=20% Similarity=0.331 Sum_probs=68.3
Q ss_pred cceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCC
Q psy7187 3 GGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTI 82 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~l 82 (214)
+|.+..|+||++||||++.++.+.+..|++.++++.+.- .|.....+.++-+|+++|..-... .....+...|
T Consensus 283 ~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~--~~~~~~~~~~~riI~~s~~~l~~~-----~~~~~f~~~L 355 (534)
T TIGR01817 283 KGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFER--VGGNRTLKVDVRLVAATNRDLEEA-----VAKGEFRADL 355 (534)
T ss_pred CCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEE--CCCCceEeecEEEEEeCCCCHHHH-----HHcCCCCHHH
Confidence 566889999999999999999999999999999998754 454556788899999988751100 1122356667
Q ss_pred CCcccEE-EEecCCCCccccH-HHHHHHHHH
Q psy7187 83 LSRFDMI-FIIKDEHDETRDI-TLAKHIMKV 111 (214)
Q Consensus 83 ldRFDL~-~~~~~~~~~~~d~-~ia~~il~~ 111 (214)
+.|+..+ +.++.-.+...|. .|+++.+..
T Consensus 356 ~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~ 386 (534)
T TIGR01817 356 YYRINVVPIFLPPLRERREDIPLLAEAFLEK 386 (534)
T ss_pred HHHhcCCeeeCCCcccccccHHHHHHHHHHH
Confidence 7777533 3333222332332 555555543
No 46
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.48 E-value=3e-06 Score=74.69 Aligned_cols=143 Identities=17% Similarity=0.247 Sum_probs=86.1
Q ss_pred cceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCC
Q psy7187 3 GGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTI 82 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~l 82 (214)
+|.+..|+||++||||++.++...+..|+++++++.+. +.|.....+.++-+|+|+|..-... .....+...+
T Consensus 230 ~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~--~~~~~~~~~~~~rii~~t~~~l~~~-----~~~g~~~~~l 302 (457)
T PRK11361 230 QGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFE--RIGGHQTIKVDIRIIAATNRDLQAM-----VKEGTFREDL 302 (457)
T ss_pred CCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEE--eCCCCceeeeceEEEEeCCCCHHHH-----HHcCCchHHH
Confidence 68899999999999999999999999999999998765 4566677888999999998751000 0112255566
Q ss_pred CCcccEEEE-ecCCCCccccH-HHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHH
Q psy7187 83 LSRFDMIFI-IKDEHDETRDI-TLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYV 160 (214)
Q Consensus 83 ldRFDL~~~-~~~~~~~~~d~-~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~ 160 (214)
+.|+.-+.+ ++.-.+...|. .++.+.+........ .....++.+.++....| -+|-=-.|..+.+.+.+.
T Consensus 303 ~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~----~~~~~~~~~a~~~L~~~----~wpgNv~eL~~~~~~~~~ 374 (457)
T PRK11361 303 FYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQ----RDIIDIDPMAMSLLTAW----SWPGNIRELSNVIERAVV 374 (457)
T ss_pred HHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcC----CCCCCcCHHHHHHHHcC----CCCCcHHHHHHHHHHHHH
Confidence 666643222 22222222232 456666655432211 11123555554444322 133223366666666554
No 47
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=98.46 E-value=2.7e-07 Score=82.12 Aligned_cols=166 Identities=15% Similarity=0.222 Sum_probs=94.3
Q ss_pred CCcceeeccCCceEeeccCCCCCH-HHHHHHHHhhhcCeEEEEecce----------EEEEeCceEEEEeecCC-CCCCC
Q psy7187 1 MEGGAMVLADGGVVCIDEFDKMRE-DDRVAIHEAMEQQTISIAKAGI----------TTTLNSRCSVLAAANSV-FGRWD 68 (214)
Q Consensus 1 ~~~G~l~la~~Gv~~iDE~~~~~~-~~~~~L~e~me~~~i~i~~~g~----------~~~lpa~~~viaa~Np~-~g~~~ 68 (214)
|+||+|..||||+|+||--+.+.. ..-..|..+|.+|++.+...+. .-.+|.++-||-..++. ...+
T Consensus 323 I~~GaLhkANGGyLIL~a~~LL~~p~~W~~LKr~L~~~~i~ie~~~~~~~~~~~~l~PepIpl~vKVILiG~~~~y~~L- 401 (509)
T PF13654_consen 323 IKPGALHKANGGYLILDAEDLLANPYAWERLKRALRTGEIEIESPEEYGLSSTVSLEPEPIPLDVKVILIGDRELYYLL- 401 (509)
T ss_dssp EE--HHHHTTTSEEEETTGGGS-HHH-HHHHHHHHHHSEE--B-S---TTSGGGG-B-S-EE---EEEEEE-TTHHHHS-
T ss_pred EcCceEEecCCeEEEEEHHHhhhChHHHHHHHHHHHcCceeeccccccccCCCCCCCCCCcceEEEEEEEcCHHHHHHH-
Confidence 479999999999999999999874 5678999999999999976531 11244444444444442 0000
Q ss_pred CCcccccccCCCCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhcc----C
Q psy7187 69 DTKGEQNIDFMPTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRC----G 144 (214)
Q Consensus 69 ~~~~~~~~~l~~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~----~ 144 (214)
....+.+..-|.+..-+.+ .-..+.+.+..|+.|.+..+ .
T Consensus 402 -------~~~D~dF~~lFkv~aef~~-----------------------------~~~~~~e~~~~~~~~i~~~~~~~~L 445 (509)
T PF13654_consen 402 -------YEYDPDFYKLFKVKAEFDS-----------------------------EMPRTEENIRQYARFIASICQKEGL 445 (509)
T ss_dssp --------HHHHHHHHHHSEEEE--S-----------------------------EEE--HHHHHHHHHHHHHHHHHHSS
T ss_pred -------HHhCHHHHhCCCEEEEccc-----------------------------cCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 0011111112222221111 11224455666665555433 3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 145 PRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 145 p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
|.++.+|...+.++.+.+ .. ..+.+....+..|++-|-.+|+..+.+.|+.+||..|+.
T Consensus 446 ~~~~~~Av~~li~~~~R~--~q-------~kLsl~~~~l~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~ 504 (509)
T PF13654_consen 446 PPFDRSAVARLIEYSARL--DQ-------DKLSLRFSWLADLLREANYWARKEGAKVITAEHVEQAIE 504 (509)
T ss_dssp --BBHHHHHHHHHHHHHC--C--------SEEE--HHHHHHHHHHHHHHHHHCT-SSB-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH--hC-------CEeCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Confidence 679999999999887653 11 136667778999999999999999999999999999985
No 48
>PHA02244 ATPase-like protein
Probab=98.46 E-value=5.3e-07 Score=76.72 Aligned_cols=81 Identities=21% Similarity=0.246 Sum_probs=62.9
Q ss_pred ccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCccc
Q psy7187 8 LADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFD 87 (214)
Q Consensus 8 la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFD 87 (214)
.++||+|+|||++.++++++..|+.+++++.+.+ .|..+..+.+|.+|||+||....|+..- .....++.+++|||
T Consensus 178 ~~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l--~g~~i~~h~~FRlIATsN~~~~G~~~~y-~G~k~L~~AllDRF- 253 (383)
T PHA02244 178 FKKGGLFFIDEIDASIPEALIIINSAIANKFFDF--ADERVTAHEDFRVISAGNTLGKGADHIY-VARNKIDGATLDRF- 253 (383)
T ss_pred hhcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEe--cCcEEecCCCEEEEEeeCCCccCccccc-CCCcccCHHHHhhc-
Confidence 5789999999999999999999999999997665 6777777789999999999732221100 12235899999999
Q ss_pred EEEEe
Q psy7187 88 MIFII 92 (214)
Q Consensus 88 L~~~~ 92 (214)
+.+.+
T Consensus 254 v~I~~ 258 (383)
T PHA02244 254 APIEF 258 (383)
T ss_pred EEeeC
Confidence 55554
No 49
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.44 E-value=2.5e-06 Score=76.43 Aligned_cols=143 Identities=17% Similarity=0.223 Sum_probs=86.5
Q ss_pred cceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCC
Q psy7187 3 GGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTI 82 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~l 82 (214)
+|.+-.|+||.+||||++.++.+.+..|+.+++++.+ .+-|...+.+.++-||+++|..-... .....+...|
T Consensus 274 ~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~--~~~g~~~~~~~~~RiI~~t~~~l~~~-----~~~~~f~~dL 346 (509)
T PRK05022 274 SGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEI--QRVGSDRSLRVDVRVIAATNRDLREE-----VRAGRFRADL 346 (509)
T ss_pred CcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCE--eeCCCCcceecceEEEEecCCCHHHH-----HHcCCccHHH
Confidence 5678899999999999999999999999999999986 34566667888999999998751000 1112355666
Q ss_pred CCcccEE-EEecCCCCcccc-HHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHH
Q psy7187 83 LSRFDMI-FIIKDEHDETRD-ITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYV 160 (214)
Q Consensus 83 ldRFDL~-~~~~~~~~~~~d-~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~ 160 (214)
+.|+..+ +.++.-.+...| ..++.|.++....... .....++.+.++....| -+|-==.|..+.+.+...
T Consensus 347 ~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~----~~~~~~s~~a~~~L~~y----~WPGNvrEL~~~i~ra~~ 418 (509)
T PRK05022 347 YHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLG----LRSLRLSPAAQAALLAY----DWPGNVRELEHVISRAAL 418 (509)
T ss_pred HhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcC----CCCCCCCHHHHHHHHhC----CCCCcHHHHHHHHHHHHH
Confidence 6666533 223322233233 3566676665432211 01123555555444332 133222355666655554
No 50
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.43 E-value=1.8e-06 Score=72.54 Aligned_cols=137 Identities=20% Similarity=0.183 Sum_probs=96.2
Q ss_pred CceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC----CCCCCCCcccccccCCCCCCCcc
Q psy7187 11 GGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV----FGRWDDTKGEQNIDFMPTILSRF 86 (214)
Q Consensus 11 ~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~----~g~~~~~~~~~~~~l~~~lldRF 86 (214)
-||+||||...++-+.-+.|..+||+-- -..|+.|+|-- .|. + -.....+|.-||||.
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~--------------aPIii~AtNRG~~kiRGT---d-~~sPhGIP~DlLDRl 353 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESEL--------------APIIILATNRGMTKIRGT---D-IESPHGIPLDLLDRL 353 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhccc--------------CcEEEEEcCCceeeeccc---C-CcCCCCCCHhhhhhe
Confidence 3899999999999999999999999632 23455566653 121 0 022345899999997
Q ss_pred cEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCC
Q psy7187 87 DMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGS 166 (214)
Q Consensus 87 DL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~ 166 (214)
|++.+..... + ++. -|+.-+. +. -...++++|.++|...=
T Consensus 354 -lII~t~py~~-~---Eir-eIi~iRa--------------------------~e-e~i~l~~~Ale~L~~ig------- 393 (450)
T COG1224 354 -LIISTRPYSR-E---EIR-EIIRIRA--------------------------KE-EDIELSDDALEYLTDIG------- 393 (450)
T ss_pred -eEEecCCCCH-H---HHH-HHHHHhh--------------------------hh-hccccCHHHHHHHHhhc-------
Confidence 6666544322 2 221 1222111 11 13468999999987642
Q ss_pred CcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhcC
Q psy7187 167 KEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRLF 214 (214)
Q Consensus 167 ~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~lf 214 (214)
...|.|.-..|+--|.-+|+.+++..|..+||++|-+||
T Consensus 394 ---------~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF 432 (450)
T COG1224 394 ---------EETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKELF 432 (450)
T ss_pred ---------hhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHH
Confidence 234788888999999999999999999999999999988
No 51
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.42 E-value=5.4e-06 Score=74.34 Aligned_cols=104 Identities=17% Similarity=0.252 Sum_probs=70.9
Q ss_pred CcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCC
Q psy7187 2 EGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPT 81 (214)
Q Consensus 2 ~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~ 81 (214)
.+|.+-+||||.+||||++.|+...+..|+.+++++.+. +-|.....|.++-+|+++|..-... .....+...
T Consensus 299 ~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~--r~g~~~~~~~dvRiIaat~~~l~~~-----v~~g~fr~d 371 (526)
T TIGR02329 299 RTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVV--RVGGTEPVPVDVRVVAATHCALTTA-----VQQGRFRRD 371 (526)
T ss_pred cccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEE--ecCCCceeeecceEEeccCCCHHHH-----hhhcchhHH
Confidence 367788899999999999999999999999999999875 3566667888999999998752100 111235555
Q ss_pred CCCccc-EEEEecCCCCcccc-HHHHHHHHHHH
Q psy7187 82 ILSRFD-MIFIIKDEHDETRD-ITLAKHIMKVH 112 (214)
Q Consensus 82 lldRFD-L~~~~~~~~~~~~d-~~ia~~il~~~ 112 (214)
|+.|+. +.+.++.-.+...| ..++.+.+...
T Consensus 372 L~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~ 404 (526)
T TIGR02329 372 LFYRLSILRIALPPLRERPGDILPLAAEYLVQA 404 (526)
T ss_pred HHHhcCCcEEeCCCchhchhHHHHHHHHHHHHH
Confidence 666664 33434433333233 35566666654
No 52
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.42 E-value=3.5e-06 Score=74.26 Aligned_cols=60 Identities=23% Similarity=0.401 Sum_probs=55.5
Q ss_pred CcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC
Q psy7187 2 EGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV 63 (214)
Q Consensus 2 ~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~ 63 (214)
+||.+-+||||-+|+|||+.||-..+..|+.+++++++- |-|.+...|.+.-||||+|-.
T Consensus 332 K~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~--rvG~t~~~~vDVRIIAATN~n 391 (560)
T COG3829 332 KPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIE--RVGGTKPIPVDVRIIAATNRN 391 (560)
T ss_pred CCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEE--ecCCCCceeeEEEEEeccCcC
Confidence 589999999999999999999999999999999998864 478888899999999999986
No 53
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.42 E-value=4.5e-06 Score=73.96 Aligned_cols=104 Identities=19% Similarity=0.312 Sum_probs=70.8
Q ss_pred CcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCC
Q psy7187 2 EGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPT 81 (214)
Q Consensus 2 ~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~ 81 (214)
.+|.+..|+||.+||||++.++...+..|+..++++.++- .|.....+.++.+|+|++..-... .....+...
T Consensus 224 ~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~--~~~~~~~~~~~rii~~~~~~l~~~-----~~~~~~~~~ 296 (469)
T PRK10923 224 RQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYR--VGGYAPVKVDVRIIAATHQNLEQR-----VQEGKFRED 296 (469)
T ss_pred CCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEe--CCCCCeEEeeEEEEEeCCCCHHHH-----HHcCCchHH
Confidence 3677889999999999999999999999999999998765 444445667899999998751000 112236677
Q ss_pred CCCccc-EEEEecCCCCcccc-HHHHHHHHHHH
Q psy7187 82 ILSRFD-MIFIIKDEHDETRD-ITLAKHIMKVH 112 (214)
Q Consensus 82 lldRFD-L~~~~~~~~~~~~d-~~ia~~il~~~ 112 (214)
|+.||. +.+.++.-.+...| ..++++.++..
T Consensus 297 L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~ 329 (469)
T PRK10923 297 LFHRLNVIRVHLPPLRERREDIPRLARHFLQVA 329 (469)
T ss_pred HHHHhcceeecCCCcccchhhHHHHHHHHHHHH
Confidence 888884 34434433333333 24555655543
No 54
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.40 E-value=9.9e-07 Score=76.76 Aligned_cols=63 Identities=22% Similarity=0.278 Sum_probs=47.9
Q ss_pred ceeeccCCceEeeccCCCCCHH--------------HHHHHHHhhhcCeEEEEecc-eEEEEeCceEEEEeecCC---CC
Q psy7187 4 GAMVLADGGVVCIDEFDKMRED--------------DRVAIHEAMEQQTISIAKAG-ITTTLNSRCSVLAAANSV---FG 65 (214)
Q Consensus 4 G~l~la~~Gv~~iDE~~~~~~~--------------~~~~L~e~me~~~i~i~~~g-~~~~lpa~~~viaa~Np~---~g 65 (214)
|.+..|.+||+||||+++++.+ ++++|++.||.+.+++.-.| ....+ .++.+|+|+|+. .|
T Consensus 167 ~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~-~~~~~i~t~nilfi~~G 245 (412)
T PRK05342 167 YDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQ-QEFIQVDTTNILFICGG 245 (412)
T ss_pred ccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCC-CCeEEeccCCceeeecc
Confidence 4455688999999999999764 88999999997777775333 33333 679999999994 35
Q ss_pred CC
Q psy7187 66 RW 67 (214)
Q Consensus 66 ~~ 67 (214)
.|
T Consensus 246 af 247 (412)
T PRK05342 246 AF 247 (412)
T ss_pred cc
Confidence 54
No 55
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.38 E-value=5.3e-06 Score=72.78 Aligned_cols=59 Identities=24% Similarity=0.406 Sum_probs=51.3
Q ss_pred cceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC
Q psy7187 3 GGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV 63 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~ 63 (214)
+|.+..|+||++||||++.|+...+..|++.++++.++- .|...+.+.++-+|+|++..
T Consensus 226 ~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~--~~~~~~~~~~~rii~~t~~~ 284 (441)
T PRK10365 226 EGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQR--VGSNQTISVDVRLIAATHRD 284 (441)
T ss_pred CCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEe--CCCCceeeeceEEEEeCCCC
Confidence 588999999999999999999999999999999999644 56666778888899888764
No 56
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.37 E-value=6.1e-06 Score=74.10 Aligned_cols=60 Identities=18% Similarity=0.359 Sum_probs=53.6
Q ss_pred CcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC
Q psy7187 2 EGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV 63 (214)
Q Consensus 2 ~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~ 63 (214)
.+|.+-.||||.+||||++.|+...+..|+.+++++++. +-|.....|.++-+|+|+|..
T Consensus 314 ~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~--r~G~~~~~~~dvRiIaat~~~ 373 (538)
T PRK15424 314 RAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVT--RVGGHQPVPVDVRVISATHCD 373 (538)
T ss_pred cCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEE--ecCCCceeccceEEEEecCCC
Confidence 368889999999999999999999999999999999876 467677889999999999875
No 57
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.36 E-value=5.7e-06 Score=76.12 Aligned_cols=60 Identities=13% Similarity=0.257 Sum_probs=52.8
Q ss_pred CcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC
Q psy7187 2 EGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV 63 (214)
Q Consensus 2 ~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~ 63 (214)
.+|.+..|+||++||||++.|+.+.+..|+.+++++.++ +.|.....|.++-||+|+|..
T Consensus 408 ~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~--~~~~~~~~~~~~riI~~t~~~ 467 (638)
T PRK11388 408 RLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVIT--RLDSRRLIPVDVRVIATTTAD 467 (638)
T ss_pred CCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEE--eCCCCceEEeeEEEEEeccCC
Confidence 367888999999999999999999999999999999875 356667778899999999874
No 58
>KOG1942|consensus
Probab=98.33 E-value=6e-06 Score=67.90 Aligned_cols=138 Identities=23% Similarity=0.242 Sum_probs=91.9
Q ss_pred CceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC----CCCCCCCcccccccCCCCCCCcc
Q psy7187 11 GGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV----FGRWDDTKGEQNIDFMPTILSRF 86 (214)
Q Consensus 11 ~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~----~g~~~~~~~~~~~~l~~~lldRF 86 (214)
-||+||||.+.++-+.-..|+.++|+ |--..||-|+|-- .|.-|- .....+|..||||.
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES--------------~iaPivifAsNrG~~~irGt~d~---~sPhGip~dllDRl 359 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALES--------------PIAPIVIFASNRGMCTIRGTEDI---LSPHGIPPDLLDRL 359 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcC--------------CCCceEEEecCCcceeecCCcCC---CCCCCCCHHHhhhe
Confidence 38999999999999999999999996 2234455555542 121110 23345889999998
Q ss_pred cEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCC
Q psy7187 87 DMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGS 166 (214)
Q Consensus 87 DL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~ 166 (214)
+++....+++. .+ +.|+..+... -...+++++..++.+.
T Consensus 360 -~Iirt~~y~~~----e~-r~Ii~~Ra~~---------------------------E~l~~~e~a~~~l~~~-------- 398 (456)
T KOG1942|consen 360 -LIIRTLPYDEE----EI-RQIIKIRAQV---------------------------EGLQVEEEALDLLAEI-------- 398 (456)
T ss_pred -eEEeeccCCHH----HH-HHHHHHHHhh---------------------------hcceecHHHHHHHHhh--------
Confidence 66655433321 22 1222222110 0225778887777543
Q ss_pred CcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhcC
Q psy7187 167 KEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRLF 214 (214)
Q Consensus 167 ~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~lf 214 (214)
....|.|.-..|+-=+--+|+.++++.|..+||.++..||
T Consensus 399 --------gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf 438 (456)
T KOG1942|consen 399 --------GTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELF 438 (456)
T ss_pred --------ccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHH
Confidence 1345777777888778889999999999999999999887
No 59
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.33 E-value=3.5e-07 Score=70.18 Aligned_cols=60 Identities=15% Similarity=0.336 Sum_probs=49.6
Q ss_pred CcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC
Q psy7187 2 EGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV 63 (214)
Q Consensus 2 ~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~ 63 (214)
++|.|..|+||++||||++.|++..+..|+++|++|++.- -|.....+.++-||+++|-.
T Consensus 85 ~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~--~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 85 KKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTR--LGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp BEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEEC--CTSSSEEE--EEEEEEESS-
T ss_pred cCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhcc--ccccccccccceEEeecCcC
Confidence 3689999999999999999999999999999999998754 45556778899999999864
No 60
>PRK15115 response regulator GlrR; Provisional
Probab=98.32 E-value=1.4e-05 Score=70.26 Aligned_cols=59 Identities=17% Similarity=0.368 Sum_probs=51.2
Q ss_pred cceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC
Q psy7187 3 GGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV 63 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~ 63 (214)
+|.+-.|+||.+||||++.++.+.+..|...|+++.+. +.|.+...+.++-+|+|++..
T Consensus 221 ~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~--~~g~~~~~~~~~rii~~~~~~ 279 (444)
T PRK15115 221 EGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVR--PLGSNRDIDIDVRIISATHRD 279 (444)
T ss_pred CCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEE--eCCCCceeeeeEEEEEeCCCC
Confidence 57889999999999999999999999999999999874 356556677889999998863
No 61
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.31 E-value=9.2e-06 Score=71.80 Aligned_cols=59 Identities=22% Similarity=0.340 Sum_probs=50.4
Q ss_pred cceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC
Q psy7187 3 GGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV 63 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~ 63 (214)
.|.+-.|+||.+||||++.++.+.+..|++.+++|.++- .|.....+.++-||+++|..
T Consensus 221 ~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~--~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 221 QGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYR--VGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred CCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEE--CCCCceeeeeeEEEEeCCCC
Confidence 467889999999999999999999999999999998765 45445666778899999875
No 62
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.28 E-value=2.3e-06 Score=74.27 Aligned_cols=59 Identities=20% Similarity=0.332 Sum_probs=45.4
Q ss_pred cceeeccCCceEeeccCCCCCH--------------HHHHHHHHhhhcCeEE-EE-ecceEEEEeCceEEEEeecCC
Q psy7187 3 GGAMVLADGGVVCIDEFDKMRE--------------DDRVAIHEAMEQQTIS-IA-KAGITTTLNSRCSVLAAANSV 63 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~~~~--------------~~~~~L~e~me~~~i~-i~-~~g~~~~lpa~~~viaa~Np~ 63 (214)
+|.+..+.+||+|+||++++++ ++++.|+++|| |+++ +. ..|....+ .++.+|.|+|..
T Consensus 174 ~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLe-G~~~~v~~~~gr~~~~-~~~i~i~TsNil 248 (413)
T TIGR00382 174 DYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIE-GTVANVPPQGGRKHPY-QEFIQIDTSNIL 248 (413)
T ss_pred cccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhh-ccceecccCCCccccC-CCeEEEEcCCce
Confidence 4566678899999999999987 68999999996 6554 33 34444433 569999999993
No 63
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.25 E-value=1e-05 Score=72.69 Aligned_cols=103 Identities=17% Similarity=0.288 Sum_probs=66.6
Q ss_pred cceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCC
Q psy7187 3 GGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTI 82 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~l 82 (214)
+|.+-.|+||.+||||++.|+...+..|+..+++|++. +.|.....+.++-||+|++..-... .....+...|
T Consensus 291 ~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~--~~g~~~~~~~~vRiI~st~~~l~~l-----~~~g~f~~dL 363 (520)
T PRK10820 291 KGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFR--RVGEDHEVHVDVRVICATQKNLVEL-----VQKGEFREDL 363 (520)
T ss_pred CChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcc--cCCCCcceeeeeEEEEecCCCHHHH-----HHcCCccHHH
Confidence 46677899999999999999999999999999998763 3555555677788888876531000 1112255667
Q ss_pred CCccc-EEEEecCCCCcccc-HHHHHHHHHHH
Q psy7187 83 LSRFD-MIFIIKDEHDETRD-ITLAKHIMKVH 112 (214)
Q Consensus 83 ldRFD-L~~~~~~~~~~~~d-~~ia~~il~~~ 112 (214)
+.|+. +.+.++.-.+...| ..++++.++..
T Consensus 364 ~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~ 395 (520)
T PRK10820 364 YYRLNVLTLNLPPLRDRPQDIMPLTELFVARF 395 (520)
T ss_pred HhhcCeeEEeCCCcccChhHHHHHHHHHHHHH
Confidence 77765 33334333333323 24455555543
No 64
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.09 E-value=6.4e-05 Score=61.61 Aligned_cols=144 Identities=19% Similarity=0.154 Sum_probs=82.8
Q ss_pred eeeccCCceEeeccCCCCC--------HHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccc
Q psy7187 5 AMVLADGGVVCIDEFDKMR--------EDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNI 76 (214)
Q Consensus 5 ~l~la~~Gv~~iDE~~~~~--------~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~ 76 (214)
.+..|.+||+||||++.+. .+.++.|+..|+++. .++.++++.+|.... .-.
T Consensus 100 ~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~-------------~~~~vila~~~~~~~-------~~~ 159 (261)
T TIGR02881 100 VIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR-------------NEFVLILAGYSDEMD-------YFL 159 (261)
T ss_pred HHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccC-------------CCEEEEecCCcchhH-------HHH
Confidence 3456789999999999865 457788999998742 346666666664211 112
Q ss_pred cCCCCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHH
Q psy7187 77 DFMPTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLK 156 (214)
Q Consensus 77 ~l~~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~ 156 (214)
.++++|.+||+..+.+.+.. .+.-..+..+.+ ++ ....+++++..+|.
T Consensus 160 ~~~p~L~sRf~~~i~f~~~~-~~el~~Il~~~~------------------------------~~-~~~~l~~~a~~~l~ 207 (261)
T TIGR02881 160 SLNPGLRSRFPISIDFPDYT-VEELMEIAERMV------------------------------KE-REYKLTEEAKWKLR 207 (261)
T ss_pred hcChHHHhccceEEEECCCC-HHHHHHHHHHHH------------------------------HH-cCCccCHHHHHHHH
Confidence 47789999998877665432 221112211111 11 12247778888877
Q ss_pred HHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccC--CCCCCcHHHH
Q psy7187 157 NRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQ--LEPFAIDSHV 207 (214)
Q Consensus 157 ~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~--~r~~V~~~Dv 207 (214)
.++...+..... .+-..|.+..++..|..+...+ ..+.++.+|.
T Consensus 208 ~~~~~~~~~~~~-------~~gn~R~~~n~~e~a~~~~~~r~~~~~~~~~~~~ 253 (261)
T TIGR02881 208 EHLYKVDQLSSR-------EFSNARYVRNIIEKAIRRQAVRLLDKSDYSKEDL 253 (261)
T ss_pred HHHHHHHhccCC-------CCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHH
Confidence 766555431111 1224577766666665555433 2244555554
No 65
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.09 E-value=1.5e-05 Score=66.27 Aligned_cols=72 Identities=22% Similarity=0.165 Sum_probs=51.7
Q ss_pred eeeccCCceEeeccCCCC---------CHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCccccc
Q psy7187 5 AMVLADGGVVCIDEFDKM---------REDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQN 75 (214)
Q Consensus 5 ~l~la~~Gv~~iDE~~~~---------~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~ 75 (214)
.+-.|.|||+||||++.+ ...+++.|++.|+++. .++.||+|.++..- ..-
T Consensus 116 ~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~-------------~~~~vI~a~~~~~~-------~~~ 175 (284)
T TIGR02880 116 ILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR-------------DDLVVILAGYKDRM-------DSF 175 (284)
T ss_pred HHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC-------------CCEEEEEeCCcHHH-------HHH
Confidence 355678999999999976 3567789999998653 35778888776410 011
Q ss_pred ccCCCCCCCcccEEEEecCCC
Q psy7187 76 IDFMPTILSRFDMIFIIKDEH 96 (214)
Q Consensus 76 ~~l~~~lldRFDL~~~~~~~~ 96 (214)
..+.++|.+||+..+.+.+..
T Consensus 176 ~~~np~L~sR~~~~i~fp~l~ 196 (284)
T TIGR02880 176 FESNPGFSSRVAHHVDFPDYS 196 (284)
T ss_pred HhhCHHHHhhCCcEEEeCCcC
Confidence 246789999999888776554
No 66
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.00 E-value=1.3e-05 Score=74.79 Aligned_cols=83 Identities=18% Similarity=0.230 Sum_probs=58.7
Q ss_pred CCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCC-----CC--CCCCc--c----cccc
Q psy7187 10 DGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVF-----GR--WDDTK--G----EQNI 76 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~-----g~--~~~~~--~----~~~~ 76 (214)
..||+++||++++++++++.|+++|++|.++-. .|....+ .++.+|+|+|.-. .. +.... . .-..
T Consensus 557 p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~-~g~~vd~-rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 634 (758)
T PRK11034 557 PHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDN-NGRKADF-RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKK 634 (758)
T ss_pred CCcEEEeccHhhhhHHHHHHHHHHHhcCeeecC-CCceecC-CCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHH
Confidence 568999999999999999999999999999864 3443332 4678999999531 00 11000 0 1124
Q ss_pred cCCCCCCCcccEEEEecC
Q psy7187 77 DFMPTILSRFDMIFIIKD 94 (214)
Q Consensus 77 ~l~~~lldRFDL~~~~~~ 94 (214)
.+++.|+.|+|-++....
T Consensus 635 ~f~pefl~Rid~ii~f~~ 652 (758)
T PRK11034 635 IFTPEFRNRLDNIIWFDH 652 (758)
T ss_pred hcCHHHHccCCEEEEcCC
Confidence 588999999997776543
No 67
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.93 E-value=6.5e-06 Score=63.32 Aligned_cols=59 Identities=25% Similarity=0.298 Sum_probs=48.0
Q ss_pred cceeeccCCceEeeccCCCCCH-----------HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC
Q psy7187 3 GGAMVLADGGVVCIDEFDKMRE-----------DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV 63 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~~~~-----------~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~ 63 (214)
+|.+-.+++||+|+|||+|.++ .+++.|+++||.|+++-.+ |....+ .++.+|+|+|-.
T Consensus 61 ~~~v~~~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~-g~~vd~-~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 61 PGYVGAEEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSY-GRTVDT-SNIIFIMTSNFG 130 (171)
T ss_dssp TCHHHHHHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETT-CCEEEG-TTEEEEEEESSS
T ss_pred cceeeccchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceeccc-ceEEEe-CCceEEEecccc
Confidence 4555667789999999999999 9999999999999999543 333333 369999999985
No 68
>CHL00181 cbbX CbbX; Provisional
Probab=97.85 E-value=8.9e-05 Score=61.72 Aligned_cols=72 Identities=22% Similarity=0.163 Sum_probs=50.8
Q ss_pred eeeccCCceEeeccCCCC---------CHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCccccc
Q psy7187 5 AMVLADGGVVCIDEFDKM---------REDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQN 75 (214)
Q Consensus 5 ~l~la~~Gv~~iDE~~~~---------~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~ 75 (214)
.+..|.|||+||||++.+ ..++++.|++.|+.+. -++.||+|.++..- ..-
T Consensus 117 ~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~-------------~~~~vI~ag~~~~~-------~~~ 176 (287)
T CHL00181 117 VLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR-------------DDLVVIFAGYKDRM-------DKF 176 (287)
T ss_pred HHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC-------------CCEEEEEeCCcHHH-------HHH
Confidence 345688999999999875 5678889999998643 24677777665310 011
Q ss_pred ccCCCCCCCcccEEEEecCCC
Q psy7187 76 IDFMPTILSRFDMIFIIKDEH 96 (214)
Q Consensus 76 ~~l~~~lldRFDL~~~~~~~~ 96 (214)
..+.++|.+||+..+.+.+..
T Consensus 177 ~~~np~L~sR~~~~i~F~~~t 197 (287)
T CHL00181 177 YESNPGLSSRIANHVDFPDYT 197 (287)
T ss_pred HhcCHHHHHhCCceEEcCCcC
Confidence 235688999999888776553
No 69
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.84 E-value=0.00013 Score=62.39 Aligned_cols=59 Identities=27% Similarity=0.422 Sum_probs=46.3
Q ss_pred CceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccEEE
Q psy7187 11 GGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDMIF 90 (214)
Q Consensus 11 ~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL~~ 90 (214)
+=|+||||+.+|++..+++|+-.||.|+|++.-+ + |-||.+. +.++|+||- .+|
T Consensus 105 ~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGA--T-----------TENPsF~------------ln~ALlSR~-~vf 158 (436)
T COG2256 105 RTILFLDEIHRFNKAQQDALLPHVENGTIILIGA--T-----------TENPSFE------------LNPALLSRA-RVF 158 (436)
T ss_pred ceEEEEehhhhcChhhhhhhhhhhcCCeEEEEec--c-----------CCCCCee------------ecHHHhhhh-hee
Confidence 4589999999999999999999999999887332 2 2366433 889999999 566
Q ss_pred EecCC
Q psy7187 91 IIKDE 95 (214)
Q Consensus 91 ~~~~~ 95 (214)
.+..-
T Consensus 159 ~lk~L 163 (436)
T COG2256 159 ELKPL 163 (436)
T ss_pred eeecC
Confidence 66443
No 70
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.83 E-value=6.4e-05 Score=70.58 Aligned_cols=82 Identities=23% Similarity=0.402 Sum_probs=54.2
Q ss_pred CCceEeeccCCCCCHHH----HHHHHHhhhc-CeEEEEe--cceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCC
Q psy7187 10 DGGVVCIDEFDKMREDD----RVAIHEAMEQ-QTISIAK--AGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTI 82 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~~----~~~L~e~me~-~~i~i~~--~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~l 82 (214)
.+.|+++||++++.++. .++|+++|+. +..+..- -+..+.+ .++.+|||+|.. .|+++|
T Consensus 416 ~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dl-s~v~~i~TaN~~-------------~i~~aL 481 (784)
T PRK10787 416 KNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDL-SDVMFVATSNSM-------------NIPAPL 481 (784)
T ss_pred CCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccC-CceEEEEcCCCC-------------CCCHHH
Confidence 45699999999999875 4899999995 4444421 1122222 468899999874 299999
Q ss_pred CCcccEEEEecCCCCccccHHHHHH
Q psy7187 83 LSRFDMIFIIKDEHDETRDITLAKH 107 (214)
Q Consensus 83 ldRFDL~~~~~~~~~~~~d~~ia~~ 107 (214)
+|||++ +..... ..+.-..|+++
T Consensus 482 l~R~~i-i~~~~~-t~eek~~Ia~~ 504 (784)
T PRK10787 482 LDRMEV-IRLSGY-TEDEKLNIAKR 504 (784)
T ss_pred hcceee-eecCCC-CHHHHHHHHHH
Confidence 999964 434333 33333444444
No 71
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.81 E-value=9.5e-05 Score=70.26 Aligned_cols=83 Identities=19% Similarity=0.249 Sum_probs=59.0
Q ss_pred CCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCC----C-CC-cc-------cccc
Q psy7187 10 DGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRW----D-DT-KG-------EQNI 76 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~----~-~~-~~-------~~~~ 76 (214)
...|+++||++++++++++.|+++|++|.++-. .|..+.+ .++.||+|+|--...+ . .. .. .-..
T Consensus 667 p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~-~g~~vd~-rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (852)
T TIGR03346 667 PYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDG-QGRTVDF-RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRA 744 (852)
T ss_pred CCcEEEEeccccCCHHHHHHHHHHHhcCceecC-CCeEEec-CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHh
Confidence 346999999999999999999999999999853 3444444 3688999999842111 0 00 00 1234
Q ss_pred cCCCCCCCcccEEEEecC
Q psy7187 77 DFMPTILSRFDMIFIIKD 94 (214)
Q Consensus 77 ~l~~~lldRFDL~~~~~~ 94 (214)
.+++.|+.|+|-++....
T Consensus 745 ~F~pel~~Rid~IivF~P 762 (852)
T TIGR03346 745 HFRPEFLNRIDEIVVFHP 762 (852)
T ss_pred hcCHHHhcCcCeEEecCC
Confidence 588999999997666543
No 72
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.79 E-value=0.00016 Score=67.17 Aligned_cols=143 Identities=15% Similarity=0.199 Sum_probs=83.5
Q ss_pred cceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCC
Q psy7187 3 GGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTI 82 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~l 82 (214)
.|.+.+|+||++||||++.++.+.+..|+.+++++.+.- .|.....+.++-+|+++|..-... .....+...|
T Consensus 463 ~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~--~g~~~~~~~~~RiI~~t~~~l~~~-----~~~~~f~~~L 535 (686)
T PRK15429 463 IGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFER--LGSNKIIQTDVRLIAATNRDLKKM-----VADREFRSDL 535 (686)
T ss_pred hhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEe--CCCCCcccceEEEEEeCCCCHHHH-----HHcCcccHHH
Confidence 366778999999999999999999999999999987654 555566678899999998751100 1111244445
Q ss_pred CCcccEE-EEecCCCCcccc-HHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHH
Q psy7187 83 LSRFDMI-FIIKDEHDETRD-ITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYV 160 (214)
Q Consensus 83 ldRFDL~-~~~~~~~~~~~d-~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~ 160 (214)
+.|+... +.++.-.+...| ..++++.+........+ ....++.+.++....| -+|-==.|.++.+.++..
T Consensus 536 ~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~----~~~~~s~~al~~L~~y----~WPGNvrEL~~~i~~a~~ 607 (686)
T PRK15429 536 YYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGR----NIDSIPAETLRTLSNM----EWPGNVRELENVIERAVL 607 (686)
T ss_pred HhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCC----CCCCcCHHHHHHHHhC----CCCCcHHHHHHHHHHHHH
Confidence 5555432 222222222222 25556665554332111 1123555555554332 234333466666666654
No 73
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.66 E-value=0.00013 Score=68.75 Aligned_cols=82 Identities=22% Similarity=0.304 Sum_probs=51.9
Q ss_pred CCceEeeccCCCCCHHH----HHHHHHhhhc---CeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCC
Q psy7187 10 DGGVVCIDEFDKMREDD----RVAIHEAMEQ---QTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTI 82 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~~----~~~L~e~me~---~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~l 82 (214)
.+.|++|||++++.++. .++|++.|+. +..+-..-+..+.+ .++.+|+|+|+... ++++|
T Consensus 414 ~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~-s~v~~I~TtN~~~~------------i~~~L 480 (775)
T TIGR00763 414 KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDL-SKVIFIATANSIDT------------IPRPL 480 (775)
T ss_pred CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceecc-CCEEEEEecCCchh------------CCHHH
Confidence 55799999999997643 4789999984 22221111222222 36788999999533 89999
Q ss_pred CCcccEEEEecCCCCccccHHHHH
Q psy7187 83 LSRFDMIFIIKDEHDETRDITLAK 106 (214)
Q Consensus 83 ldRFDL~~~~~~~~~~~~d~~ia~ 106 (214)
+|||++ +.+ ...+.+....|+.
T Consensus 481 ~~R~~v-i~~-~~~~~~e~~~I~~ 502 (775)
T TIGR00763 481 LDRMEV-IEL-SGYTEEEKLEIAK 502 (775)
T ss_pred hCCeeE-Eec-CCCCHHHHHHHHH
Confidence 999974 333 3334444444443
No 74
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.63 E-value=9.3e-05 Score=69.23 Aligned_cols=99 Identities=15% Similarity=0.163 Sum_probs=65.9
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCC-----CCCCcc--------ccc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGR-----WDDTKG--------EQN 75 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~-----~~~~~~--------~~~ 75 (214)
...+|+++||++++++++.+.|+++|++|.++-. .|..+.+. ++.+|+|+|.-... .+.... .-.
T Consensus 552 ~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~-~g~~vd~~-~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~ 629 (731)
T TIGR02639 552 HPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDN-NGRKADFR-NVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIK 629 (731)
T ss_pred CCCeEEEEechhhcCHHHHHHHHHhhccCeeecC-CCcccCCC-CCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHH
Confidence 3568999999999999999999999999999854 34444333 68899999984211 111100 112
Q ss_pred ccCCCCCCCcccEEEEecCCCCccccHHHHHHHHH
Q psy7187 76 IDFMPTILSRFDMIFIIKDEHDETRDITLAKHIMK 110 (214)
Q Consensus 76 ~~l~~~lldRFDL~~~~~~~~~~~~d~~ia~~il~ 110 (214)
..+++.|++|||-++.+.. -+.+.-.+|.++.++
T Consensus 630 ~~f~pef~~Rid~Vi~F~p-Ls~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 630 KLFSPEFRNRLDAIIHFNP-LSEEVLEKIVQKFVD 663 (731)
T ss_pred hhcChHHHhcCCeEEEcCC-CCHHHHHHHHHHHHH
Confidence 3578999999997666543 344444444444433
No 75
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.62 E-value=0.00019 Score=68.10 Aligned_cols=154 Identities=16% Similarity=0.181 Sum_probs=92.9
Q ss_pred CCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCC-----CCC-----cc-------
Q psy7187 10 DGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRW-----DDT-----KG------- 72 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~-----~~~-----~~------- 72 (214)
..+|+++||++++++++.+.|+++|++|.++-. .|..+.+. ++.+|.|+|--.+.+ +.. ..
T Consensus 668 p~svvllDEieka~~~v~~~Llq~ld~g~l~d~-~Gr~vd~~-n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (852)
T TIGR03345 668 PYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDG-EGREIDFK-NTVILLTSNAGSDLIMALCADPETAPDPEALLEALRP 745 (852)
T ss_pred CCcEEEEechhhcCHHHHHHHHHHhhcceeecC-CCcEEecc-ccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHH
Confidence 557999999999999999999999999999864 45555554 699999999742211 111 00
Q ss_pred cccccCCCCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHh-ccCCCCCHHH
Q psy7187 73 EQNIDFMPTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRM-RCGPRLTHEA 151 (214)
Q Consensus 73 ~~~~~l~~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~-~~~p~ls~ea 151 (214)
.-...++++|++|+|+ +.+ .+-+.+.-..|...-+.... ++ +.++ .+...+++++
T Consensus 746 ~~~~~f~PEflnRi~i-I~F-~pLs~e~l~~Iv~~~L~~l~-------------------~r---l~~~~gi~l~i~d~a 801 (852)
T TIGR03345 746 ELLKVFKPAFLGRMTV-IPY-LPLDDDVLAAIVRLKLDRIA-------------------RR---LKENHGAELVYSEAL 801 (852)
T ss_pred HHHHhccHHHhcceeE-EEe-CCCCHHHHHHHHHHHHHHHH-------------------HH---HHHhcCceEEECHHH
Confidence 1123588999999983 433 33343333333333222111 11 1111 1234688999
Q ss_pred HHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHH--HHHHHhccCCCCCCc
Q psy7187 152 GEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVR--IAESMAKMQLEPFAI 203 (214)
Q Consensus 152 ~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lir--lA~a~A~l~~r~~V~ 203 (214)
.++|..... +.....|.+..+|+ +...+|++-+...++
T Consensus 802 ~~~La~~g~--------------~~~~GAR~L~r~Ie~~i~~~la~~~l~~~~~ 841 (852)
T TIGR03345 802 VEHIVARCT--------------EVESGARNIDAILNQTLLPELSRQILERLAA 841 (852)
T ss_pred HHHHHHHcC--------------CCCCChHHHHHHHHHHHHHHHHHHHHhChhc
Confidence 988876531 12345777777663 445566555544433
No 76
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.62 E-value=0.00037 Score=66.09 Aligned_cols=82 Identities=20% Similarity=0.271 Sum_probs=59.5
Q ss_pred CceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCC-------C--CCCC--c----c---
Q psy7187 11 GGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFG-------R--WDDT--K----G--- 72 (214)
Q Consensus 11 ~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g-------~--~~~~--~----~--- 72 (214)
..|+++||++++++++.+.|+++||+|.++-.+ |....+ .++.+|.|+|.... . |... . .
T Consensus 612 ~~VvllDeieka~~~v~~~Llq~le~g~~~d~~-g~~v~~-~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~ 689 (821)
T CHL00095 612 YTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSK-GRTIDF-KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKR 689 (821)
T ss_pred CeEEEECChhhCCHHHHHHHHHHhccCceecCC-CcEEec-CceEEEEeCCcchHHHHhhccccCCcccccccccccHHH
Confidence 479999999999999999999999999999755 555555 47999999997421 1 1110 0 0
Q ss_pred -c------ccccCCCCCCCcccEEEEecC
Q psy7187 73 -E------QNIDFMPTILSRFDMIFIIKD 94 (214)
Q Consensus 73 -~------~~~~l~~~lldRFDL~~~~~~ 94 (214)
. -...+++.|++|+|-++....
T Consensus 690 ~~~~~~~~~~~~f~peflnRid~ii~F~p 718 (821)
T CHL00095 690 LSNLVNEELKQFFRPEFLNRLDEIIVFRQ 718 (821)
T ss_pred HHHHHHHHHHHhcCHHHhccCCeEEEeCC
Confidence 0 012478999999987666543
No 77
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.60 E-value=0.00024 Score=63.81 Aligned_cols=58 Identities=22% Similarity=0.330 Sum_probs=51.9
Q ss_pred cceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC
Q psy7187 3 GGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV 63 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~ 63 (214)
-|.+-+||||.+|+|||..||-..++.|+.++++|+|+- -|.+. .|.++.||+|++-.
T Consensus 400 ~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p--~g~~~-~~vdirvi~ath~d 457 (606)
T COG3284 400 KGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTP--LGGTR-IKVDIRVIAATHRD 457 (606)
T ss_pred cccceecCCCccHHHHhhhchHHHHHHHHHHHhhCceec--cCCcc-eeEEEEEEeccCcC
Confidence 377889999999999999999999999999999999986 45555 79999999999875
No 78
>KOG2680|consensus
Probab=97.55 E-value=0.0016 Score=54.03 Aligned_cols=136 Identities=16% Similarity=0.198 Sum_probs=93.4
Q ss_pred CceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC----CCC-CCCCcccccccCCCCCCCc
Q psy7187 11 GGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV----FGR-WDDTKGEQNIDFMPTILSR 85 (214)
Q Consensus 11 ~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~----~g~-~~~~~~~~~~~l~~~lldR 85 (214)
-||+||||...++-+--+.|..|+|+--. ..++.|+|-- .|. | .....+|-.||||
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAlE~d~~--------------PiiimaTNrgit~iRGTn~-----~SphGiP~D~lDR 349 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFSFLNRALENDMA--------------PIIIMATNRGITRIRGTNY-----RSPHGIPIDLLDR 349 (454)
T ss_pred cceEEEeeehhhhhHHHHHHHHHhhhccC--------------cEEEEEcCCceEEeecCCC-----CCCCCCcHHHhhh
Confidence 59999999999999999999999986332 2344555543 121 1 1223488899999
Q ss_pred ccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcC
Q psy7187 86 FDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNG 165 (214)
Q Consensus 86 FDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~ 165 (214)
. |++.+..... +.+ +.|++-+... -...++++|.++|...-
T Consensus 350 ~-lII~t~py~~----~d~-~~IL~iRc~E---------------------------Edv~m~~~A~d~Lt~i~------ 390 (454)
T KOG2680|consen 350 M-LIISTQPYTE----EDI-KKILRIRCQE---------------------------EDVEMNPDALDLLTKIG------ 390 (454)
T ss_pred h-heeecccCcH----HHH-HHHHHhhhhh---------------------------hccccCHHHHHHHHHhh------
Confidence 7 6665533221 111 2233322110 13467889999887653
Q ss_pred CCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhcC
Q psy7187 166 SKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRLF 214 (214)
Q Consensus 166 ~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~lf 214 (214)
...|.|.-..||-.|.-.+.=+....|+.+|+..|-+||
T Consensus 391 ----------~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~LF 429 (454)
T KOG2680|consen 391 ----------EATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYRLF 429 (454)
T ss_pred ----------hhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHHH
Confidence 235788888999999999998899999999999999987
No 79
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.00032 Score=65.13 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=58.0
Q ss_pred ceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCC----CCC---C--c---c----ccc
Q psy7187 12 GVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGR----WDD---T--K---G----EQN 75 (214)
Q Consensus 12 Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~----~~~---~--~---~----~~~ 75 (214)
.|+++||++|.++++.+.|+|+|+.|.++=.++. ++.| .++.||+|+|-..+. ... . . . .-.
T Consensus 595 SViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr-~VdF-rNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~ 672 (786)
T COG0542 595 SVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGR-TVDF-RNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELK 672 (786)
T ss_pred eEEEechhhhcCHHHHHHHHHHhcCCeeecCCCC-EEec-ceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHH
Confidence 5899999999999999999999999999976553 3333 369999999996211 110 0 1 1 112
Q ss_pred ccCCCCCCCcccEEEEe
Q psy7187 76 IDFMPTILSRFDMIFII 92 (214)
Q Consensus 76 ~~l~~~lldRFDL~~~~ 92 (214)
..+++.||.|+|-++..
T Consensus 673 ~~F~PEFLNRid~II~F 689 (786)
T COG0542 673 KHFRPEFLNRIDEIIPF 689 (786)
T ss_pred hhCCHHHHhhcccEEec
Confidence 46889999999965554
No 80
>KOG2028|consensus
Probab=97.43 E-value=0.00069 Score=57.62 Aligned_cols=56 Identities=23% Similarity=0.440 Sum_probs=43.4
Q ss_pred CceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccEEE
Q psy7187 11 GGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDMIF 90 (214)
Q Consensus 11 ~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL~~ 90 (214)
+-|+||||+.+|++..++.++-..|.|.|++.-+ + |-||.+. |..+|++|. .+|
T Consensus 223 kTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGA--T-----------TENPSFq------------ln~aLlSRC-~Vf 276 (554)
T KOG2028|consen 223 KTILFIDEIHRFNKSQQDTFLPHVENGDITLIGA--T-----------TENPSFQ------------LNAALLSRC-RVF 276 (554)
T ss_pred eeEEEeHHhhhhhhhhhhcccceeccCceEEEec--c-----------cCCCccc------------hhHHHHhcc-cee
Confidence 4689999999999999999999999998887333 2 2356433 779999999 555
Q ss_pred Ee
Q psy7187 91 II 92 (214)
Q Consensus 91 ~~ 92 (214)
++
T Consensus 277 vL 278 (554)
T KOG2028|consen 277 VL 278 (554)
T ss_pred Ee
Confidence 54
No 81
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.40 E-value=0.001 Score=63.28 Aligned_cols=97 Identities=16% Similarity=0.262 Sum_probs=63.6
Q ss_pred CCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCC----CCCCCc-----c----cccc
Q psy7187 10 DGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFG----RWDDTK-----G----EQNI 76 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g----~~~~~~-----~----~~~~ 76 (214)
..+|+++||++++++++++.|+++|++|.++-. .|..+.+ .++.+|.|+|.... .++... . ....
T Consensus 670 p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~-~gr~vd~-rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (857)
T PRK10865 670 PYSVILLDEVEKAHPDVFNILLQVLDDGRLTDG-QGRTVDF-RNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSH 747 (857)
T ss_pred CCCeEEEeehhhCCHHHHHHHHHHHhhCceecC-CceEEee-cccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcc
Confidence 458999999999999999999999999998743 3444443 35779999998311 111110 0 1233
Q ss_pred cCCCCCCCcccEEEEecCCCCccccHHHHHHHH
Q psy7187 77 DFMPTILSRFDMIFIIKDEHDETRDITLAKHIM 109 (214)
Q Consensus 77 ~l~~~lldRFDL~~~~~~~~~~~~d~~ia~~il 109 (214)
.+.+.|+.|+|-++..... +.+.-..|.++.+
T Consensus 748 ~f~PELlnRld~iivF~PL-~~edl~~Iv~~~L 779 (857)
T PRK10865 748 NFRPEFINRIDEVVVFHPL-GEQHIASIAQIQL 779 (857)
T ss_pred cccHHHHHhCCeeEecCCC-CHHHHHHHHHHHH
Confidence 5789999999876665443 3333334444433
No 82
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.36 E-value=0.0037 Score=58.38 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=26.6
Q ss_pred CCceEeeccCCCCCHHHHHHHHHhhhcCeE
Q psy7187 10 DGGVVCIDEFDKMREDDRVAIHEAMEQQTI 39 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i 39 (214)
+++++||||++.|+...++.|+..||+|.+
T Consensus 109 ~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~I 138 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQQDALLPWVENGTI 138 (725)
T ss_pred CceEEEEeChhhCCHHHHHHHHHHhcCceE
Confidence 467999999999999999999999997654
No 83
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.0042 Score=55.26 Aligned_cols=53 Identities=30% Similarity=0.354 Sum_probs=40.2
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceE-EEEeecCCCCCCCCCcccccccCCCCCCCccc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCS-VLAAANSVFGRWDDTKGEQNIDFMPTILSRFD 87 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~-viaa~Np~~g~~~~~~~~~~~~l~~~lldRFD 87 (214)
++..|++|||++.|..+.++.|+..||+. |..+. ++++.||. .+++++.+|+.
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p-------------~~~vv~Ilattn~~-------------kl~~~L~SR~~ 169 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEP-------------PSHVVFVLATTNLE-------------KVPPTIISRCQ 169 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhC-------------CCcEEEEEEeCChH-------------hhhHHHhcCcE
Confidence 56789999999999999999999999961 11233 44556663 27889999995
No 84
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.33 E-value=0.0034 Score=54.90 Aligned_cols=56 Identities=29% Similarity=0.515 Sum_probs=41.9
Q ss_pred CCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEee--cCCCCCCCCCcccccccCCCCCCCccc
Q psy7187 10 DGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAA--NSVFGRWDDTKGEQNIDFMPTILSRFD 87 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~--Np~~g~~~~~~~~~~~~l~~~lldRFD 87 (214)
.++|++|||++.++...++.|+..||++++. +++++ ||.. .+.++|++|+
T Consensus 92 ~~~vL~IDEi~~l~~~~q~~LL~~le~~~ii---------------lI~att~n~~~------------~l~~aL~SR~- 143 (413)
T PRK13342 92 RRTILFIDEIHRFNKAQQDALLPHVEDGTIT---------------LIGATTENPSF------------EVNPALLSRA- 143 (413)
T ss_pred CceEEEEechhhhCHHHHHHHHHHhhcCcEE---------------EEEeCCCChhh------------hccHHHhccc-
Confidence 6789999999999999999999999986543 34443 4432 3778999999
Q ss_pred EEEEec
Q psy7187 88 MIFIIK 93 (214)
Q Consensus 88 L~~~~~ 93 (214)
.++.+.
T Consensus 144 ~~~~~~ 149 (413)
T PRK13342 144 QVFELK 149 (413)
T ss_pred eeeEeC
Confidence 444443
No 85
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.30 E-value=0.00069 Score=58.95 Aligned_cols=143 Identities=19% Similarity=0.263 Sum_probs=88.1
Q ss_pred eecc-CCceEeeccCCCCCH------------HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcc
Q psy7187 6 MVLA-DGGVVCIDEFDKMRE------------DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKG 72 (214)
Q Consensus 6 l~la-~~Gv~~iDE~~~~~~------------~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~ 72 (214)
+..| +.||+|||||+|+.. .++..|+-.||--+|++ |.| +..++..++- |+|-|...++
T Consensus 244 i~~ae~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~-k~~---~i~T~~ILFI----~~GAF~~~kp 315 (443)
T PRK05201 244 IERVEQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVST-KYG---MVKTDHILFI----ASGAFHVSKP 315 (443)
T ss_pred HHHHHcCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeee-cce---eEECCceeEE----ecCCcCCCCh
Confidence 4444 899999999999763 27888998888767765 333 2333322222 1355544333
Q ss_pred cccccCCCCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhH-hccCCCCCHHH
Q psy7187 73 EQNIDFMPTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCR-MRCGPRLTHEA 151 (214)
Q Consensus 73 ~~~~~l~~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar-~~~~p~ls~ea 151 (214)
..|-+.|..||.+++.+..-. . .--.+||.. -...+++.|..+-+ ..+.-.++++|
T Consensus 316 ---~DlIPEl~GR~Pi~v~L~~L~-~----~dL~~ILte---------------P~nsLikQy~~Lf~~egv~L~Ftd~A 372 (443)
T PRK05201 316 ---SDLIPELQGRFPIRVELDALT-E----EDFVRILTE---------------PKASLIKQYQALLATEGVTLEFTDDA 372 (443)
T ss_pred ---hhccHHHhCccceEEECCCCC-H----HHHHHHhcC---------------ChhHHHHHHHHHHhhcCcEEEEcHHH
Confidence 236689999999988875432 1 111233321 02347788876544 33345789999
Q ss_pred HHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHH
Q psy7187 152 GEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVR 188 (214)
Q Consensus 152 ~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lir 188 (214)
.+.|.+........ .-++..|.|.+++.
T Consensus 373 l~~IA~~A~~~N~~---------~~~iGAR~LrtI~E 400 (443)
T PRK05201 373 IRRIAEIAYQVNEK---------TENIGARRLHTVME 400 (443)
T ss_pred HHHHHHHHHHhccc---------ccccchhhHHHHHH
Confidence 99998877643221 13568898888765
No 86
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.23 E-value=0.0076 Score=52.37 Aligned_cols=36 Identities=17% Similarity=0.016 Sum_probs=30.4
Q ss_pred ccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 177 PITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 177 ~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
+.|.+.+..+.+-|.-.|--+.+..|+.+|+.+|+.
T Consensus 335 g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~ 370 (389)
T PRK03992 335 GASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIE 370 (389)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 567788888888888888777888999999999975
No 87
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.11 E-value=0.0077 Score=48.56 Aligned_cols=70 Identities=21% Similarity=0.468 Sum_probs=47.1
Q ss_pred CCceEeeccCCCCCHHHHHHH-------HHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCC
Q psy7187 10 DGGVVCIDEFDKMREDDRVAI-------HEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTI 82 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~~~~~L-------~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~l 82 (214)
.|--+|+||+|+++.++++.+ ++++..+.-++.-.|....++..+.+..|+||... ....||..|
T Consensus 84 ~GaW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~--------gr~~LP~nL 155 (231)
T PF12774_consen 84 SGAWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYA--------GRSELPENL 155 (231)
T ss_dssp HT-EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CC--------CC--S-HHH
T ss_pred cCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccC--------CcccCCHhH
Confidence 467799999999999877765 56666666666668999999999999999999632 123477777
Q ss_pred CCccc
Q psy7187 83 LSRFD 87 (214)
Q Consensus 83 ldRFD 87 (214)
..-|=
T Consensus 156 k~lFR 160 (231)
T PF12774_consen 156 KALFR 160 (231)
T ss_dssp CTTEE
T ss_pred HHHhh
Confidence 76664
No 88
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.08 E-value=0.00089 Score=66.43 Aligned_cols=82 Identities=22% Similarity=0.383 Sum_probs=65.2
Q ss_pred Ccceeecc--CCceEeeccCCCCCHHHHHHHHHhhh-cCeEEEEecc---eEEEEeCceEEEEeecCCCCCCCCCccccc
Q psy7187 2 EGGAMVLA--DGGVVCIDEFDKMREDDRVAIHEAME-QQTISIAKAG---ITTTLNSRCSVLAAANSVFGRWDDTKGEQN 75 (214)
Q Consensus 2 ~~G~l~la--~~Gv~~iDE~~~~~~~~~~~L~e~me-~~~i~i~~~g---~~~~lpa~~~viaa~Np~~g~~~~~~~~~~ 75 (214)
.-|.|+.| -|...++|||+..++++++.|-.++| ++++.+..-| ...+-.-.|.++|||||- |.| ..
T Consensus 1283 ~DGpLV~AMk~GdfFLlDEIsLAdDSVLERLNSVLE~~RtL~l~E~g~a~~~vtA~dgF~ffATMNPG-GDy------GK 1355 (4600)
T COG5271 1283 KDGPLVKAMKCGDFFLLDEISLADDSVLERLNSVLESQRTLYLTETGNAAEEVTAHDGFRFFATMNPG-GDY------GK 1355 (4600)
T ss_pred ccchHHHHHhcCCeeEeeeccccchHHHHHHHHhhcccceEEEeecCCccceeeeccCceEEEeeCCC-Ccc------ch
Confidence 35777766 45788999999999999999999999 5788887666 566777789999999995 443 23
Q ss_pred ccCCCCCCCcccEEE
Q psy7187 76 IDFMPTILSRFDMIF 90 (214)
Q Consensus 76 ~~l~~~lldRFDL~~ 90 (214)
..||++|..||-=+.
T Consensus 1356 kELSPALRNRFTEiw 1370 (4600)
T COG5271 1356 KELSPALRNRFTEIW 1370 (4600)
T ss_pred hhCCHHHhcccceEe
Confidence 469999999996433
No 89
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.08 E-value=0.0072 Score=51.97 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=32.0
Q ss_pred ccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 177 PITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 177 ~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
+.|.+.+..+.+-|..+|--+.+..|+.+|+.+|+.
T Consensus 326 g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~ 361 (364)
T TIGR01242 326 GASGADLKAICTEAGMFAIREERDYVTMDDFIKAVE 361 (364)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Confidence 467888889999999999888999999999999975
No 90
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.07 E-value=0.0023 Score=55.77 Aligned_cols=141 Identities=17% Similarity=0.276 Sum_probs=86.8
Q ss_pred cCCceEeeccCCCCCH------------HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccc
Q psy7187 9 ADGGVVCIDEFDKMRE------------DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNI 76 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~------------~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~ 76 (214)
+..||+|||||+|+.. .++..|+-.||--+|++ |.| +..++..++- |+|-|...++ .
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~-k~~---~v~T~~ILFI----~~GAF~~~kp---~ 314 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNT-KYG---MVKTDHILFI----AAGAFQLAKP---S 314 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeee-cce---eEECCceeEE----ecCCcCCCCh---h
Confidence 6899999999999764 27888998888766665 444 2333322222 1355543322 2
Q ss_pred cCCCCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHh-ccCCCCCHHHHHHH
Q psy7187 77 DFMPTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRM-RCGPRLTHEAGEKL 155 (214)
Q Consensus 77 ~l~~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~-~~~p~ls~ea~~~i 155 (214)
.|-+.|..||.+++.+.+. +. .--.+||.. -...+++.|..+-+. -+.-.++++|.+.|
T Consensus 315 DlIPEl~GR~Pi~v~L~~L-~~----edL~rILte---------------P~nsLikQy~~Lf~~egv~L~Ftd~Al~~I 374 (441)
T TIGR00390 315 DLIPELQGRFPIRVELQAL-TT----DDFERILTE---------------PKNSLIKQYKALMKTEGVNIEFSDEAIKRI 374 (441)
T ss_pred hccHHHhCccceEEECCCC-CH----HHHHHHhcC---------------ChhHHHHHHHHHHhhcCcEEEEeHHHHHHH
Confidence 3668899999988877543 21 111233331 012477778755553 23346799999999
Q ss_pred HHHHHHHhcCCCcCCCCccccccCHHHHHHHHHH
Q psy7187 156 KNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRI 189 (214)
Q Consensus 156 ~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirl 189 (214)
.+......... -++..|.|.+++.-
T Consensus 375 A~~A~~~N~~~---------~~iGAR~LrtilE~ 399 (441)
T TIGR00390 375 AELAYNVNEKT---------ENIGARRLHTVLER 399 (441)
T ss_pred HHHHHHhcccc---------cccchhhHHHHHHH
Confidence 88876532221 35688998887653
No 91
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.04 E-value=0.012 Score=54.90 Aligned_cols=59 Identities=24% Similarity=0.256 Sum_probs=42.5
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccE
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDM 88 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL 88 (214)
+...|++|||++.|+....++|+..||+- |..+.+|.++|-.. +|+..|+||+ +
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEP-------------P~~v~FILaTtd~~------------KIp~TIrSRC-q 171 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEP-------------PPHVKFILATTDPQ------------KIPVTVLSRC-L 171 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhc-------------CCCeEEEEEECChh------------hccchhhhhe-E
Confidence 45679999999999999999999999972 22344444443211 3889999999 5
Q ss_pred EEEec
Q psy7187 89 IFIIK 93 (214)
Q Consensus 89 ~~~~~ 93 (214)
.|.+.
T Consensus 172 ~f~Fk 176 (830)
T PRK07003 172 QFNLK 176 (830)
T ss_pred EEecC
Confidence 56553
No 92
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.03 E-value=0.011 Score=51.22 Aligned_cols=53 Identities=13% Similarity=0.026 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 146 RLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 146 ~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
.+++++.+++.+..... . =.+|....+++-|...|.-++++.|+.+||..|+.
T Consensus 228 ~~~~~~l~~i~~~~~~~--~------------Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~ 280 (394)
T PRK00411 228 VVDDEVLDLIADLTARE--H------------GDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYE 280 (394)
T ss_pred CCCHhHHHHHHHHHHHh--c------------CcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 36778888887765321 0 13677777888888888888999999999999875
No 93
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0018 Score=59.28 Aligned_cols=70 Identities=26% Similarity=0.350 Sum_probs=49.1
Q ss_pred cCCceEeeccCCCCCHHH----HHHHHHhhh-cCeEEEE--ecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCC
Q psy7187 9 ADGGVVCIDEFDKMREDD----RVAIHEAME-QQTISIA--KAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPT 81 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~----~~~L~e~me-~~~i~i~--~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~ 81 (214)
..+=|..|||+++|..+. -++|+|+|+ +|..+.. .-...+-| ++..+|||+|-... +|.|
T Consensus 416 ~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL-S~VmFiaTANsl~t------------IP~P 482 (782)
T COG0466 416 VKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL-SKVMFIATANSLDT------------IPAP 482 (782)
T ss_pred CcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccch-hheEEEeecCcccc------------CChH
Confidence 356789999999998753 469999998 4554442 11222222 35789999998644 9999
Q ss_pred CCCcccEEEE
Q psy7187 82 ILSRFDMIFI 91 (214)
Q Consensus 82 lldRFDL~~~ 91 (214)
||||-.++-.
T Consensus 483 LlDRMEiI~l 492 (782)
T COG0466 483 LLDRMEVIRL 492 (782)
T ss_pred Hhcceeeeee
Confidence 9999875443
No 94
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.99 E-value=0.0013 Score=47.65 Aligned_cols=69 Identities=23% Similarity=0.273 Sum_probs=52.5
Q ss_pred eccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcc
Q psy7187 7 VLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRF 86 (214)
Q Consensus 7 ~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRF 86 (214)
...+.+++++||++.++......+.+.|++..... ..+.++.+++++|+... ..+...+.+||
T Consensus 81 ~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~ii~~~~~~~~----------~~~~~~~~~r~ 143 (151)
T cd00009 81 EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-------IDRENVRVIGATNRPLL----------GDLDRALYDRL 143 (151)
T ss_pred ccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-------ccCCCeEEEEecCcccc----------CCcChhHHhhh
Confidence 34578999999999998888888999998755433 34567999999998632 12678889999
Q ss_pred cEEEEe
Q psy7187 87 DMIFII 92 (214)
Q Consensus 87 DL~~~~ 92 (214)
|..+.+
T Consensus 144 ~~~i~~ 149 (151)
T cd00009 144 DIRIVI 149 (151)
T ss_pred ccEeec
Confidence 866654
No 95
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.98 E-value=0.0035 Score=58.83 Aligned_cols=120 Identities=9% Similarity=0.068 Sum_probs=73.2
Q ss_pred CceEeeccCCCCC---------HHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCC
Q psy7187 11 GGVVCIDEFDKMR---------EDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPT 81 (214)
Q Consensus 11 ~Gv~~iDE~~~~~---------~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~ 81 (214)
+.|+||||++.+- .+..+.|...|+.|. ..+|||+|+.+= ...+...++
T Consensus 275 ~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~---------------i~~IgaTt~~e~-------~~~~~~d~a 332 (731)
T TIGR02639 275 NAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGK---------------LRCIGSTTYEEY-------KNHFEKDRA 332 (731)
T ss_pred CeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCC---------------eEEEEecCHHHH-------HHHhhhhHH
Confidence 5799999999874 235667888777654 557899988420 012346789
Q ss_pred CCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCC-CCCHHHHHHHHHHHH
Q psy7187 82 ILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGP-RLTHEAGEKLKNRYV 160 (214)
Q Consensus 82 lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p-~ls~ea~~~i~~~y~ 160 (214)
|.+||.. +.+.. ++.+....|-+.+...... ..+-.++.+.+...+.++..++.- .+++.|.+++.....
T Consensus 333 l~rRf~~-i~v~~-p~~~~~~~il~~~~~~~e~-------~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a 403 (731)
T TIGR02639 333 LSRRFQK-IDVGE-PSIEETVKILKGLKEKYEE-------FHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGA 403 (731)
T ss_pred HHHhCce-EEeCC-CCHHHHHHHHHHHHHHHHh-------ccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhh
Confidence 9999984 44433 3444333433333322111 122356777888777777776432 467788888876654
Q ss_pred H
Q psy7187 161 L 161 (214)
Q Consensus 161 ~ 161 (214)
.
T Consensus 404 ~ 404 (731)
T TIGR02639 404 S 404 (731)
T ss_pred h
Confidence 3
No 96
>KOG2545|consensus
Probab=96.96 E-value=0.053 Score=46.94 Aligned_cols=164 Identities=16% Similarity=0.174 Sum_probs=111.0
Q ss_pred CCcceeeccCCceEeeccCCCCCH-------HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCccc
Q psy7187 1 MEGGAMVLADGGVVCIDEFDKMRE-------DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGE 73 (214)
Q Consensus 1 ~~~G~l~la~~Gv~~iDE~~~~~~-------~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~ 73 (214)
+.+|.|-+|.|-.+.+||=..-+- ...+.|-.-+++|.++..-.=...+++++..|+-.+ +|+-
T Consensus 364 LvsgvLQlapgThLVLDETeLqqGtLn~vGvhnvq~LsnLI~~Qkl~ydfqyyqme~~~nv~vlIlS---eGrs------ 434 (543)
T KOG2545|consen 364 LVSGVLQLAPGTHLVLDETELQQGTLNDVGVHNVQFLSNLISQQKLTYDFQYYQMEVHSNVRVLILS---EGRS------ 434 (543)
T ss_pred cccceeecCCCceEEeehhhcCCCccCccchhhHHHHHHHhhccccceecceEEEEeccCceEEEee---CCcc------
Confidence 358999999999999999643221 245577777888888775444567788887777665 3431
Q ss_pred ccccCCCCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHH
Q psy7187 74 QNIDFMPTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGE 153 (214)
Q Consensus 74 ~~~~l~~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~ 153 (214)
-+|. |+.+.+.. ...+. + ..-..-....+|.|+.-+|. ..-.+++|..+
T Consensus 435 ---ilPA------Dl~i~lqp-~~v~~--------l------------e~~tps~l~q~rcyltt~r~-l~~nIsee~t~ 483 (543)
T KOG2545|consen 435 ---ILPA------DLGIRLQP-DSVDT--------L------------EFPTPSDLLQFRCYLTTMRN-LRANISEEMTD 483 (543)
T ss_pred ---cCcc------cccccCCC-CCCCc--------c------------ccCChhHHHHHHHHHHHHHh-hccCccHHHHH
Confidence 1222 11111110 00000 0 00011123456778877776 35578999999
Q ss_pred HHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 154 KLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 154 ~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
+|..-|+.+|+..+. ...-.+..++-+|+..+.-.|++++..+|-..|.+|
T Consensus 484 ~iq~dfV~mRq~n~~---------snaddLs~lLv~sRlls~S~G~ttlsre~wq~a~el 534 (543)
T KOG2545|consen 484 YIQSDFVSMRQYNKE---------SNADDLSLLLVCSRLLSKSFGRTTLSREDWQAAREL 534 (543)
T ss_pred HHHHHHHHHHhhCcc---------cchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHH
Confidence 999999999987653 235668899999999999999999999999998765
No 97
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.86 E-value=0.018 Score=49.21 Aligned_cols=52 Identities=15% Similarity=0.062 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 147 LTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 147 ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
+++++.+++....... . =.+|....+++.|.-.|..+.+..|+.+||..|+.
T Consensus 221 ~~~~~l~~i~~~~~~~--~------------Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~ 272 (365)
T TIGR02928 221 LDDGVIPLCAALAAQE--H------------GDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQE 272 (365)
T ss_pred CChhHHHHHHHHHHHh--c------------CCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 6677777776654321 0 14677777888888888888889999999998864
No 98
>PRK04132 replication factor C small subunit; Provisional
Probab=96.78 E-value=0.025 Score=53.62 Aligned_cols=55 Identities=25% Similarity=0.410 Sum_probs=43.7
Q ss_pred ceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccEEEE
Q psy7187 12 GVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDMIFI 91 (214)
Q Consensus 12 Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL~~~ 91 (214)
.|++|||++.|+.+.+++|+..||+ .|..+.+|.++|+.. ++.++|.||+ ..+.
T Consensus 632 KVvIIDEaD~Lt~~AQnALLk~lEe-------------p~~~~~FILi~N~~~------------kIi~tIrSRC-~~i~ 685 (846)
T PRK04132 632 KIIFLDEADALTQDAQQALRRTMEM-------------FSSNVRFILSCNYSS------------KIIEPIQSRC-AIFR 685 (846)
T ss_pred EEEEEECcccCCHHHHHHHHHHhhC-------------CCCCeEEEEEeCChh------------hCchHHhhhc-eEEe
Confidence 5999999999999999999999996 133466777788753 2779999998 4444
Q ss_pred e
Q psy7187 92 I 92 (214)
Q Consensus 92 ~ 92 (214)
+
T Consensus 686 F 686 (846)
T PRK04132 686 F 686 (846)
T ss_pred C
Confidence 4
No 99
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.74 E-value=0.0017 Score=64.60 Aligned_cols=78 Identities=21% Similarity=0.323 Sum_probs=63.4
Q ss_pred eccCCceEeeccCCCCCHHHHHHHHHhhhc-CeEEEEecceEEEEeCceEEEEeecCCC-CCCCCCcccccccCCCCCCC
Q psy7187 7 VLADGGVVCIDEFDKMREDDRVAIHEAMEQ-QTISIAKAGITTTLNSRCSVLAAANSVF-GRWDDTKGEQNIDFMPTILS 84 (214)
Q Consensus 7 ~la~~Gv~~iDE~~~~~~~~~~~L~e~me~-~~i~i~~~g~~~~lpa~~~viaa~Np~~-g~~~~~~~~~~~~l~~~lld 84 (214)
++-+||-+.+||+|....++++.|-.++++ +...|..-..++...-+|.|.||.||+. |. ....||.++++
T Consensus 1608 amr~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qgg-------GRKgLPkSF~n 1680 (4600)
T COG5271 1608 AMRDGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGG-------GRKGLPKSFLN 1680 (4600)
T ss_pred HhhcCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCC-------CcccCCHHHhh
Confidence 456899999999999999999999999996 6677765556677777899999999992 21 22349999999
Q ss_pred cccEEEE
Q psy7187 85 RFDMIFI 91 (214)
Q Consensus 85 RFDL~~~ 91 (214)
||-.++.
T Consensus 1681 RFsvV~~ 1687 (4600)
T COG5271 1681 RFSVVKM 1687 (4600)
T ss_pred hhheEEe
Confidence 9976665
No 100
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.73 E-value=0.014 Score=55.37 Aligned_cols=133 Identities=18% Similarity=0.194 Sum_probs=77.6
Q ss_pred eEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccEEEEe
Q psy7187 13 VVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDMIFII 92 (214)
Q Consensus 13 v~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL~~~~ 92 (214)
|++|||++.+.....+.|+..++--.. -.++..|||.+|+..-. ..|.+.+.+||..-.+.
T Consensus 872 IIILDEID~L~kK~QDVLYnLFR~~~~----------s~SKLiLIGISNdlDLp---------erLdPRLRSRLg~eeIv 932 (1164)
T PTZ00112 872 ILIIDEIDYLITKTQKVLFTLFDWPTK----------INSKLVLIAISNTMDLP---------ERLIPRCRSRLAFGRLV 932 (1164)
T ss_pred EEEeehHhhhCccHHHHHHHHHHHhhc----------cCCeEEEEEecCchhcc---------hhhhhhhhhcccccccc
Confidence 799999999987767778877763110 13468899999975210 12556777777643333
Q ss_pred cCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCC
Q psy7187 93 KDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEK 172 (214)
Q Consensus 93 ~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~ 172 (214)
+.+.+.+ .+. .|+..+.. .+ .-.+++++.+++.+.... ..
T Consensus 933 F~PYTaE---QL~-dILk~RAe-----------------------~A----~gVLdDdAIELIArkVAq--~S------- 972 (1164)
T PTZ00112 933 FSPYKGD---EIE-KIIKERLE-----------------------NC----KEIIDHTAIQLCARKVAN--VS------- 972 (1164)
T ss_pred CCCCCHH---HHH-HHHHHHHH-----------------------hC----CCCCCHHHHHHHHHhhhh--cC-------
Confidence 3333322 221 12222111 11 124788888888774331 00
Q ss_pred ccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 173 KLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 173 ~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
+ .+|...-++|.|-..+ ....|+++||.+|+.
T Consensus 973 -G----DARKALDILRrAgEik---egskVT~eHVrkAle 1004 (1164)
T PTZ00112 973 -G----DIRKALQICRKAFENK---RGQKIVPRDITEATN 1004 (1164)
T ss_pred -C----HHHHHHHHHHHHHhhc---CCCccCHHHHHHHHH
Confidence 1 3555555666665543 456899999999974
No 101
>PLN03025 replication factor C subunit; Provisional
Probab=96.67 E-value=0.044 Score=46.25 Aligned_cols=52 Identities=25% Similarity=0.300 Sum_probs=38.3
Q ss_pred CCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcc
Q psy7187 10 DGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRF 86 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRF 86 (214)
...|++|||++.|+...+++|+..||.- |..+.++-++|+.. ++.++|.+|.
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~-------------~~~t~~il~~n~~~------------~i~~~L~SRc 150 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIY-------------SNTTRFALACNTSS------------KIIEPIQSRC 150 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcc-------------cCCceEEEEeCCcc------------ccchhHHHhh
Confidence 4579999999999999999999999841 22233555666532 2667888997
No 102
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.63 E-value=0.023 Score=50.88 Aligned_cols=65 Identities=25% Similarity=0.309 Sum_probs=39.2
Q ss_pred CceEeeccCCCCCH--------------HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccc
Q psy7187 11 GGVVCIDEFDKMRE--------------DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNI 76 (214)
Q Consensus 11 ~Gv~~iDE~~~~~~--------------~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~ 76 (214)
.+|+||||++.+.. ..++.|+..|+. .. -.....||||+|+...
T Consensus 148 p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~---------~~--~~~~v~vI~aTn~~~~----------- 205 (495)
T TIGR01241 148 PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG---------FG--TNTGVIVIAATNRPDV----------- 205 (495)
T ss_pred CCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcc---------cc--CCCCeEEEEecCChhh-----------
Confidence 37999999988643 123344444431 10 0124788999998532
Q ss_pred cCCCCCCC--cccEEEEecCCCCcc
Q psy7187 77 DFMPTILS--RFDMIFIIKDEHDET 99 (214)
Q Consensus 77 ~l~~~lld--RFDL~~~~~~~~~~~ 99 (214)
+.++++. |||-.+.+. .++.+
T Consensus 206 -ld~al~r~gRfd~~i~i~-~Pd~~ 228 (495)
T TIGR01241 206 -LDPALLRPGRFDRQVVVD-LPDIK 228 (495)
T ss_pred -cCHHHhcCCcceEEEEcC-CCCHH
Confidence 6666764 999877664 34433
No 103
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.61 E-value=0.057 Score=46.47 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=24.9
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
++..|++|||++.|+....++|+..||+
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe 145 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEE 145 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhc
Confidence 3456999999999999999999999996
No 104
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=96.60 E-value=0.029 Score=47.92 Aligned_cols=59 Identities=20% Similarity=0.307 Sum_probs=51.3
Q ss_pred CcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecC
Q psy7187 2 EGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANS 62 (214)
Q Consensus 2 ~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np 62 (214)
.+|.+-+||||-+++||+.+|++..+..|+..+..|+..- -|...+.-++.-||+|+--
T Consensus 285 k~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRR--VGee~Ev~vdVRVIcatq~ 343 (511)
T COG3283 285 KKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRR--VGEDHEVHVDVRVICATQV 343 (511)
T ss_pred ccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceee--cCCcceEEEEEEEEecccc
Confidence 4688999999999999999999999999999999999764 6766777778888888754
No 105
>CHL00176 ftsH cell division protein; Validated
Probab=96.58 E-value=0.022 Score=52.63 Aligned_cols=60 Identities=27% Similarity=0.315 Sum_probs=36.8
Q ss_pred ceEeeccCCCCC-----------HH---HHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCccccccc
Q psy7187 12 GVVCIDEFDKMR-----------ED---DRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNID 77 (214)
Q Consensus 12 Gv~~iDE~~~~~-----------~~---~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~ 77 (214)
.|+||||++.+. +. .+..|+..|+. .. -+....||||+|....
T Consensus 277 ~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg---------~~--~~~~ViVIaaTN~~~~------------ 333 (638)
T CHL00176 277 CIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDG---------FK--GNKGVIVIAATNRVDI------------ 333 (638)
T ss_pred cEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcc---------cc--CCCCeeEEEecCchHh------------
Confidence 589999998873 12 33444444431 10 1235788999988532
Q ss_pred CCCCCC--CcccEEEEecC
Q psy7187 78 FMPTIL--SRFDMIFIIKD 94 (214)
Q Consensus 78 l~~~ll--dRFDL~~~~~~ 94 (214)
+.++++ .|||..+.+..
T Consensus 334 LD~ALlRpGRFd~~I~v~l 352 (638)
T CHL00176 334 LDAALLRPGRFDRQITVSL 352 (638)
T ss_pred hhhhhhccccCceEEEECC
Confidence 556666 48998877643
No 106
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.57 E-value=0.054 Score=49.08 Aligned_cols=58 Identities=24% Similarity=0.255 Sum_probs=42.2
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCce-EEEEeecCCCCCCCCCcccccccCCCCCCCccc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRC-SVLAAANSVFGRWDDTKGEQNIDFMPTILSRFD 87 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~-~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFD 87 (214)
++..|++|||+++|+.+..++|+..||+. |..+ .|++|.++. .++..++||.
T Consensus 118 g~~kViIIDEa~~ls~~a~naLLK~LEep-------------p~~v~fIL~Ttd~~-------------kil~tI~SRc- 170 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSFNALLKTLEEP-------------PEYVKFILATTDYH-------------KIPVTILSRC- 170 (546)
T ss_pred CCcEEEEEechhhccHHHHHHHHHHHhcC-------------CCCceEEEEECChh-------------hhhhhHHHhe-
Confidence 46789999999999999999999999973 2223 344555542 2666799999
Q ss_pred EEEEec
Q psy7187 88 MIFIIK 93 (214)
Q Consensus 88 L~~~~~ 93 (214)
.+|.+.
T Consensus 171 ~~~~f~ 176 (546)
T PRK14957 171 IQLHLK 176 (546)
T ss_pred eeEEeC
Confidence 555553
No 107
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.57 E-value=0.12 Score=43.47 Aligned_cols=28 Identities=36% Similarity=0.519 Sum_probs=25.1
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
++.++++|||++.++++..+.|+..|++
T Consensus 124 ~~~~vlilDe~~~l~~~~~~~L~~~le~ 151 (337)
T PRK12402 124 ADYKTILLDNAEALREDAQQALRRIMEQ 151 (337)
T ss_pred CCCcEEEEeCcccCCHHHHHHHHHHHHh
Confidence 5678999999999999989999999985
No 108
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.52 E-value=0.027 Score=50.39 Aligned_cols=35 Identities=14% Similarity=0.030 Sum_probs=24.4
Q ss_pred ccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 177 PITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 177 ~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
+.|.+.++.+++-|...|.... ..++.+|+..|+.
T Consensus 427 GfSGAdI~~lv~eA~~~A~~~~-~~lt~~dl~~a~~ 461 (489)
T CHL00195 427 KFSGAEIEQSIIEAMYIAFYEK-REFTTDDILLALK 461 (489)
T ss_pred CCCHHHHHHHHHHHHHHHHHcC-CCcCHHHHHHHHH
Confidence 5567777777777766666555 4578888888864
No 109
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.51 E-value=0.047 Score=47.63 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=31.7
Q ss_pred cccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 176 IPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 176 ~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
.+.|.+.+..+.+-|.-.|--+.+..|+.+|+.+|+.
T Consensus 348 ~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~ 384 (398)
T PTZ00454 348 EKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYK 384 (398)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 3567888889999888888888889999999999975
No 110
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.49 E-value=0.094 Score=47.41 Aligned_cols=57 Identities=26% Similarity=0.274 Sum_probs=41.4
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEE-EEeecCCCCCCCCCcccccccCCCCCCCccc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSV-LAAANSVFGRWDDTKGEQNIDFMPTILSRFD 87 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~v-iaa~Np~~g~~~~~~~~~~~~l~~~lldRFD 87 (214)
+...|++|||.+.|+.+..++|+..||+- |..+.+ +++.+| . .+++++.||.
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEp-------------p~~t~FIL~ttd~--~-----------kL~~tI~SRc- 168 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEP-------------PSYVKFILATTDP--L-----------KLPATILSRT- 168 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhc-------------CCceEEEEEECCh--h-----------hCchHHHhhc-
Confidence 56789999999999999999999999961 333333 344444 1 3888999997
Q ss_pred EEEEe
Q psy7187 88 MIFII 92 (214)
Q Consensus 88 L~~~~ 92 (214)
..|.+
T Consensus 169 ~~~~F 173 (535)
T PRK08451 169 QHFRF 173 (535)
T ss_pred eeEEc
Confidence 44444
No 111
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.49 E-value=0.11 Score=43.46 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=24.2
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
+...+++|||++.++.+.+..|+..|++
T Consensus 101 ~~~~vviiDe~~~l~~~~~~~L~~~le~ 128 (319)
T PRK00440 101 APFKIIFLDEADNLTSDAQQALRRTMEM 128 (319)
T ss_pred CCceEEEEeCcccCCHHHHHHHHHHHhc
Confidence 4467999999999999888899998875
No 112
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.47 E-value=0.031 Score=51.80 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=25.4
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
+...|++|||++.|+....+.|+..||+
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEE 145 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEE 145 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHh
Confidence 4568999999999999999999999996
No 113
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.43 E-value=0.055 Score=48.16 Aligned_cols=50 Identities=26% Similarity=0.298 Sum_probs=38.0
Q ss_pred ceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEE-EEeecCCCCCCCCCcccccccCCCCCCCccc
Q psy7187 12 GVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSV-LAAANSVFGRWDDTKGEQNIDFMPTILSRFD 87 (214)
Q Consensus 12 Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~v-iaa~Np~~g~~~~~~~~~~~~l~~~lldRFD 87 (214)
-|++|||++.|+.+..++|+..||+- |..+.+ ++|.+|. +|++.++||+-
T Consensus 123 KV~IIDEah~Ls~~A~NALLKtLEEP-------------p~~viFILaTte~~-------------kI~~TI~SRCq 173 (484)
T PRK14956 123 KVYIIDEVHMLTDQSFNALLKTLEEP-------------PAHIVFILATTEFH-------------KIPETILSRCQ 173 (484)
T ss_pred EEEEEechhhcCHHHHHHHHHHhhcC-------------CCceEEEeecCChh-------------hccHHHHhhhh
Confidence 49999999999999999999999862 223344 4444442 38899999983
No 114
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.38 E-value=0.099 Score=47.02 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=40.8
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccE
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDM 88 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL 88 (214)
+...|++|||++.++....++|+..||+. |..+.+|.+++-. -+++..+.+|+ .
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEep-------------p~~~vfI~aTte~------------~kI~~tI~SRc-~ 180 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEP-------------PPHIIFIFATTEV------------QKIPATIISRC-Q 180 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHHHhhc-------------CCCEEEEEEeCCh------------HHhhHHHHhcc-e
Confidence 56789999999999999999999999852 3344444444221 12777888888 4
Q ss_pred EEEe
Q psy7187 89 IFII 92 (214)
Q Consensus 89 ~~~~ 92 (214)
.|.+
T Consensus 181 ~~ef 184 (507)
T PRK06645 181 RYDL 184 (507)
T ss_pred EEEc
Confidence 4443
No 115
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.36 E-value=0.041 Score=44.39 Aligned_cols=50 Identities=22% Similarity=0.208 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 146 RLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 146 ~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
.+++++.++|.+.+. =+.|.++.++..-. .+.+.....||.+.+++++.|
T Consensus 186 ~l~~~v~~~L~~~~~-----------------~d~r~l~~~l~~l~-~~~l~~~~~it~~~~k~~l~~ 235 (235)
T PRK08084 186 ELPEDVGRFLLKRLD-----------------REMRTLFMTLDQLD-RASITAQRKLTIPFVKEILKL 235 (235)
T ss_pred CCCHHHHHHHHHhhc-----------------CCHHHHHHHHHHHH-HHHHhcCCCCCHHHHHHHHcC
Confidence 589999999976542 25677766665532 344544456999999998764
No 116
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.33 E-value=0.049 Score=51.80 Aligned_cols=58 Identities=24% Similarity=0.308 Sum_probs=41.2
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceE-EEEeecCCCCCCCCCcccccccCCCCCCCccc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCS-VLAAANSVFGRWDDTKGEQNIDFMPTILSRFD 87 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~-viaa~Np~~g~~~~~~~~~~~~l~~~lldRFD 87 (214)
+...|++|||+++|+.+..++|+..||+- |..+. |+++.+|. +|...|+||.
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKtLEEP-------------P~~vrFILaTTe~~-------------kLl~TIlSRC- 170 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKTLEEP-------------PEHVKFLLATTDPQ-------------KLPVTVLSRC- 170 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcc-------------CCCeEEEEECCCch-------------hchHHHHHhh-
Confidence 35579999999999999999999999962 22222 33344442 2778899998
Q ss_pred EEEEec
Q psy7187 88 MIFIIK 93 (214)
Q Consensus 88 L~~~~~ 93 (214)
.+|.+.
T Consensus 171 q~f~fk 176 (944)
T PRK14949 171 LQFNLK 176 (944)
T ss_pred eEEeCC
Confidence 555443
No 117
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.33 E-value=0.012 Score=48.73 Aligned_cols=90 Identities=19% Similarity=0.214 Sum_probs=54.6
Q ss_pred ceEeeccCCCCCHH------HHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCc
Q psy7187 12 GVVCIDEFDKMRED------DRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSR 85 (214)
Q Consensus 12 Gv~~iDE~~~~~~~------~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldR 85 (214)
-|+|||++|.-..+ ..+.|+|.|+.|-.--.+ .....-=-+++++|||||..|+. .+|+.++.+
T Consensus 102 lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~-~~~~~~i~~i~~vaa~~p~~Gr~---------~is~R~~r~ 171 (272)
T PF12775_consen 102 LVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRK-KLEWKSIEDIQFVAAMNPTGGRN---------PISPRFLRH 171 (272)
T ss_dssp EEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTT-TTEEEEECSEEEEEEESSTTT-----------SHHHHHHTT
T ss_pred EEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCC-CcEEEEEeeeEEEEecCCCCCCC---------CCChHHhhh
Confidence 48999999985533 578999999987655322 22333334699999999976652 388899999
Q ss_pred ccEEEEecCCCCccccHHHHHHHHHHHH
Q psy7187 86 FDMIFIIKDEHDETRDITLAKHIMKVHM 113 (214)
Q Consensus 86 FDL~~~~~~~~~~~~d~~ia~~il~~~~ 113 (214)
|-++. +. .++.+.-..|-..++..+.
T Consensus 172 f~i~~-~~-~p~~~sl~~If~~il~~~l 197 (272)
T PF12775_consen 172 FNILN-IP-YPSDESLNTIFSSILQSHL 197 (272)
T ss_dssp EEEEE------TCCHHHHHHHHHHHHHT
T ss_pred eEEEE-ec-CCChHHHHHHHHHHHhhhc
Confidence 95433 33 3344444455555665553
No 118
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.33 E-value=0.0047 Score=54.29 Aligned_cols=75 Identities=15% Similarity=0.094 Sum_probs=53.6
Q ss_pred CCceEeeccCCCCCHH-HHHHHHHhhhcC------eEEEE--e-cceEEEEeCceEEEEeecCCCCCCCCCcccccccCC
Q psy7187 10 DGGVVCIDEFDKMRED-DRVAIHEAMEQQ------TISIA--K-AGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFM 79 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~-~~~~L~e~me~~------~i~i~--~-~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~ 79 (214)
++.|++|||+|+.+.+ +...+++.||.+ .+.+. . .+....+|.++.||||||..... -..+.
T Consensus 272 ~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs--------~~~lD 343 (459)
T PRK11331 272 KKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRS--------LAVVD 343 (459)
T ss_pred CCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccc--------hhhcc
Confidence 4579999999999854 567888889864 23332 2 23457899999999999997321 11378
Q ss_pred CCCCCcccEEEEe
Q psy7187 80 PTILSRFDMIFII 92 (214)
Q Consensus 80 ~~lldRFDL~~~~ 92 (214)
.+|+.||..+-..
T Consensus 344 ~AlrRRF~fi~i~ 356 (459)
T PRK11331 344 YALRRRFSFIDIE 356 (459)
T ss_pred HHHHhhhheEEec
Confidence 8999999754444
No 119
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.31 E-value=0.001 Score=55.17 Aligned_cols=59 Identities=22% Similarity=0.409 Sum_probs=49.9
Q ss_pred CcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecC
Q psy7187 2 EGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANS 62 (214)
Q Consensus 2 ~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np 62 (214)
.+|.|--||||.+|+||+.++-.+.+.+|+.++|+....- -|......++|++||-+--
T Consensus 274 r~gllrsadggmlfldeigelgadeqamllkaieekrf~p--fgsdr~v~sdfqliagtvr 332 (531)
T COG4650 274 REGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKRFYP--FGSDRQVSSDFQLIAGTVR 332 (531)
T ss_pred hhhhhccCCCceEehHhhhhcCccHHHHHHHHHHhhccCC--CCCccccccchHHhhhhHH
Confidence 3688999999999999999999999999999999877654 4556667788999987644
No 120
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.31 E-value=0.051 Score=48.91 Aligned_cols=28 Identities=21% Similarity=0.199 Sum_probs=25.3
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
+...|++|||++.|+.+..++|+..||+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEe 145 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEE 145 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhc
Confidence 3457999999999999999999999996
No 121
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.23 E-value=0.016 Score=54.41 Aligned_cols=124 Identities=11% Similarity=0.100 Sum_probs=74.0
Q ss_pred cCCceEeeccCCCC---------CHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCC
Q psy7187 9 ADGGVVCIDEFDKM---------REDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFM 79 (214)
Q Consensus 9 a~~Gv~~iDE~~~~---------~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~ 79 (214)
..+||+||||++.+ ..+..+.|...++.|. ..+|||+|+.+- ...+...
T Consensus 277 ~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~---------------i~vIgATt~~E~-------~~~~~~D 334 (758)
T PRK11034 277 DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGK---------------IRVIGSTTYQEF-------SNIFEKD 334 (758)
T ss_pred cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCC---------------eEEEecCChHHH-------HHHhhcc
Confidence 45789999999976 1233444666665433 667889888521 0123477
Q ss_pred CCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCC-CCCHHHHHHHHHH
Q psy7187 80 PTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGP-RLTHEAGEKLKNR 158 (214)
Q Consensus 80 ~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p-~ls~ea~~~i~~~ 158 (214)
++|..||+- +.+ +.++.+....|-..+...... ..+-.++.+-++..+.++..++.. .+++.|.+++...
T Consensus 335 ~AL~rRFq~-I~v-~ePs~~~~~~IL~~~~~~ye~-------~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea 405 (758)
T PRK11034 335 RALARRFQK-IDI-TEPSIEETVQIINGLKPKYEA-------HHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEA 405 (758)
T ss_pred HHHHhhCcE-EEe-CCCCHHHHHHHHHHHHHHhhh-------ccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHH
Confidence 899999984 434 344444443333332222211 233456777777777777776542 5677888888877
Q ss_pred HHHHh
Q psy7187 159 YVLMR 163 (214)
Q Consensus 159 y~~~r 163 (214)
....|
T Consensus 406 ~a~~~ 410 (758)
T PRK11034 406 GARAR 410 (758)
T ss_pred HHhhc
Confidence 65443
No 122
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.21 E-value=0.024 Score=52.55 Aligned_cols=35 Identities=14% Similarity=0.005 Sum_probs=24.5
Q ss_pred ccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHH
Q psy7187 177 PITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEAL 211 (214)
Q Consensus 177 ~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai 211 (214)
+.|.+.+..+++-|.-+|.-..++.|+.+|+.+|+
T Consensus 355 G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~ 389 (644)
T PRK10733 355 GFSGADLANLVNEAALFAARGNKRVVSMVEFEKAK 389 (644)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 45667777777777666666677777777777765
No 123
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.17 E-value=0.0018 Score=54.97 Aligned_cols=77 Identities=13% Similarity=0.182 Sum_probs=60.8
Q ss_pred cceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC-CCCCCCCcccccccCCCC
Q psy7187 3 GGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV-FGRWDDTKGEQNIDFMPT 81 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~-~g~~~~~~~~~~~~l~~~ 81 (214)
-|++..|++|++=+=|+-+.+.+.+..|+.+.++|.+.+.+. ...+|.+..|||.+||. +..|..+ +--.+
T Consensus 226 ~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqEg~ik~~~~--~~~i~~D~liiAhsNe~E~~~f~~~------~~~eA 297 (358)
T PF08298_consen 226 SGELNRANRGIMEFVEMLKAPIEFLHPLLTATQEGNIKVDED--FGMIPFDELIIAHSNEEEYNKFKNN------KNNEA 297 (358)
T ss_pred ccHHHHhhchhHHHHHHhcCcHHHHHHHhcchhcCceecCCc--ccccccceeEEecCCHHHHHHHhcc------ccchh
Confidence 389999999999888999999999999999999999998322 23468899999999997 3333211 12378
Q ss_pred CCCccc
Q psy7187 82 ILSRFD 87 (214)
Q Consensus 82 lldRFD 87 (214)
|.||+-
T Consensus 298 f~DRi~ 303 (358)
T PF08298_consen 298 FKDRIE 303 (358)
T ss_pred hhhheE
Confidence 999983
No 124
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.06 E-value=0.0033 Score=45.19 Aligned_cols=60 Identities=32% Similarity=0.375 Sum_probs=47.2
Q ss_pred CceEeeccCCCCCHHH-----------HHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCC
Q psy7187 11 GGVVCIDEFDKMREDD-----------RVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFM 79 (214)
Q Consensus 11 ~Gv~~iDE~~~~~~~~-----------~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~ 79 (214)
.+|++|||++.+-... .+.|...|+...-. ..++.||+++|-... ++
T Consensus 59 ~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~----------~~~~~vI~ttn~~~~------------i~ 116 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSK----------NSRVIVIATTNSPDK------------ID 116 (132)
T ss_dssp SEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTT----------SSSEEEEEEESSGGG------------SC
T ss_pred ceeeeeccchhcccccccccccccccccceeeecccccccc----------cccceeEEeeCChhh------------CC
Confidence 5899999999998886 78888888853311 446899999988432 88
Q ss_pred CCCC-CcccEEEEe
Q psy7187 80 PTIL-SRFDMIFII 92 (214)
Q Consensus 80 ~~ll-dRFDL~~~~ 92 (214)
++++ +|||-.+.+
T Consensus 117 ~~l~~~rf~~~i~~ 130 (132)
T PF00004_consen 117 PALLRSRFDRRIEF 130 (132)
T ss_dssp HHHHSTTSEEEEEE
T ss_pred HhHHhCCCcEEEEc
Confidence 8999 999988765
No 125
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.98 E-value=0.16 Score=46.92 Aligned_cols=58 Identities=26% Similarity=0.279 Sum_probs=42.4
Q ss_pred CCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCc-eEEEEeecCCCCCCCCCcccccccCCCCCCCcccE
Q psy7187 10 DGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSR-CSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDM 88 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~-~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL 88 (214)
...|++|||++.|+....++|+..||+- |.. ..|++|.+|. .|+..|+||+ +
T Consensus 119 ~~KV~IIDEah~Ls~~a~NALLKtLEEP-------------p~~v~FIL~Tt~~~-------------kLl~TI~SRC-~ 171 (647)
T PRK07994 119 RFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PEHVKFLLATTDPQ-------------KLPVTILSRC-L 171 (647)
T ss_pred CCEEEEEechHhCCHHHHHHHHHHHHcC-------------CCCeEEEEecCCcc-------------ccchHHHhhh-e
Confidence 4569999999999999999999999972 222 2344455553 3888999997 5
Q ss_pred EEEecC
Q psy7187 89 IFIIKD 94 (214)
Q Consensus 89 ~~~~~~ 94 (214)
.|.+..
T Consensus 172 ~~~f~~ 177 (647)
T PRK07994 172 QFHLKA 177 (647)
T ss_pred EeeCCC
Confidence 565543
No 126
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.95 E-value=0.025 Score=53.94 Aligned_cols=122 Identities=14% Similarity=0.126 Sum_probs=73.3
Q ss_pred CceEeeccCCCCCH--------HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCC
Q psy7187 11 GGVVCIDEFDKMRE--------DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTI 82 (214)
Q Consensus 11 ~Gv~~iDE~~~~~~--------~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~l 82 (214)
+.|+||||+..+.. +.-+.|..+|+.|. ..+|||+++.+-+ .-+.+.++|
T Consensus 281 ~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~---------------l~~IgaTT~~e~~-------~~~~~d~AL 338 (852)
T TIGR03345 281 PIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGE---------------LRTIAATTWAEYK-------KYFEKDPAL 338 (852)
T ss_pred CeEEEEeChHHhccCCCccccccHHHHhhHHhhCCC---------------eEEEEecCHHHHh-------hhhhccHHH
Confidence 56999999999853 22235777777654 5678888885210 123478999
Q ss_pred CCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccC-CCCCHHHHHHHHHHHHH
Q psy7187 83 LSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCG-PRLTHEAGEKLKNRYVL 161 (214)
Q Consensus 83 ldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~-p~ls~ea~~~i~~~y~~ 161 (214)
.+||.. +.+. .++.+.... |+.......+. ..+-.++.+.+...+.++..|+. ..+++.|.++|-.....
T Consensus 339 ~rRf~~-i~v~-eps~~~~~~----iL~~~~~~~e~---~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~ 409 (852)
T TIGR03345 339 TRRFQV-VKVE-EPDEETAIR----MLRGLAPVLEK---HHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACAR 409 (852)
T ss_pred HHhCeE-EEeC-CCCHHHHHH----HHHHHHHhhhh---cCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHH
Confidence 999964 4443 334333333 33322221111 12234677888888888877653 46778888888776544
Q ss_pred Hh
Q psy7187 162 MR 163 (214)
Q Consensus 162 ~r 163 (214)
.|
T Consensus 410 ~~ 411 (852)
T TIGR03345 410 VA 411 (852)
T ss_pred HH
Confidence 33
No 127
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.94 E-value=0.095 Score=48.14 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=25.6
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
+...|++|||++.|+.+..++|+..||+
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~LEE 145 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKTLEE 145 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHHhhc
Confidence 4567999999999999999999999997
No 128
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.90 E-value=0.14 Score=47.41 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=24.7
Q ss_pred CCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 10 DGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
...|++|||++.|+....++|+..||+
T Consensus 118 k~KV~IIDEVh~LS~~A~NALLKtLEE 144 (702)
T PRK14960 118 RFKVYLIDEVHMLSTHSFNALLKTLEE 144 (702)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhc
Confidence 456999999999999999999999996
No 129
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.89 E-value=0.17 Score=46.57 Aligned_cols=58 Identities=24% Similarity=0.268 Sum_probs=41.4
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCce-EEEEeecCCCCCCCCCcccccccCCCCCCCccc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRC-SVLAAANSVFGRWDDTKGEQNIDFMPTILSRFD 87 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~-~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFD 87 (214)
+...|++|||++.|+....++|+..||+- |..+ .|++|.+|. +++..++||+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP-------------P~~~~fIL~Ttd~~-------------kil~TIlSRc- 175 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEP-------------PEYLKFVLATTDPQ-------------KVPVTVLSRC- 175 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccC-------------CCCeEEEEEECCch-------------hhhHHHHHhc-
Confidence 34579999999999999999999999862 2233 344555553 2566789998
Q ss_pred EEEEec
Q psy7187 88 MIFIIK 93 (214)
Q Consensus 88 L~~~~~ 93 (214)
++|.+.
T Consensus 176 ~~~~f~ 181 (618)
T PRK14951 176 LQFNLR 181 (618)
T ss_pred eeeecC
Confidence 555553
No 130
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.89 E-value=0.12 Score=46.20 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=25.9
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
+...|++|||.+.|+.+..++|+..||+
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEe 142 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEE 142 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhC
Confidence 5678999999999999999999999997
No 131
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.86 E-value=0.035 Score=47.61 Aligned_cols=64 Identities=23% Similarity=0.252 Sum_probs=41.1
Q ss_pred ceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC----CCCCCCCcccccccCCCCCCCccc
Q psy7187 12 GVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV----FGRWDDTKGEQNIDFMPTILSRFD 87 (214)
Q Consensus 12 Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~----~g~~~~~~~~~~~~l~~~lldRFD 87 (214)
|||||||.+.++-+.-+.|..+||+.- -..||-|+|-. .|. |- ..-..+|..||||+
T Consensus 280 GVLFIDEvHmLDiEcFsfLnralEs~~--------------sPiiIlATNRg~~~irGt-~~---~sphGiP~DlLDRl- 340 (398)
T PF06068_consen 280 GVLFIDEVHMLDIECFSFLNRALESEL--------------SPIIILATNRGITKIRGT-DI---ISPHGIPLDLLDRL- 340 (398)
T ss_dssp -EEEEESGGGSBHHHHHHHHHHHTSTT----------------EEEEEES-SEEE-BTT-S----EEETT--HHHHTTE-
T ss_pred ceEEecchhhccHHHHHHHHHHhcCCC--------------CcEEEEecCceeeeccCc-cC---cCCCCCCcchHhhc-
Confidence 899999999999999999999999632 23455566642 232 00 22345888999998
Q ss_pred EEEEecC
Q psy7187 88 MIFIIKD 94 (214)
Q Consensus 88 L~~~~~~ 94 (214)
|++.+..
T Consensus 341 lII~t~p 347 (398)
T PF06068_consen 341 LIIRTKP 347 (398)
T ss_dssp EEEEE--
T ss_pred EEEECCC
Confidence 7776643
No 132
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.82 E-value=0.2 Score=45.69 Aligned_cols=54 Identities=26% Similarity=0.263 Sum_probs=40.4
Q ss_pred ccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCce-EEEEeecCCCCCCCCCcccccccCCCCCCCcc
Q psy7187 8 LADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRC-SVLAAANSVFGRWDDTKGEQNIDFMPTILSRF 86 (214)
Q Consensus 8 la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~-~viaa~Np~~g~~~~~~~~~~~~l~~~lldRF 86 (214)
.+...|++|||++.|.....++|+..||+- |..+ .|++|.+|. .+++.+.||+
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~naLLKtLEep-------------p~~~ifIlatt~~~-------------ki~~tI~SRc 170 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFNALLKTLEEP-------------PAHVIFILATTEPH-------------KIPATILSRC 170 (559)
T ss_pred cCCeEEEEEECcccCCHHHHHHHHHHhcCC-------------CCCeEEEEEeCChh-------------hCcHHHHhHh
Confidence 456789999999999999999999999863 2233 344555552 2778888998
Q ss_pred c
Q psy7187 87 D 87 (214)
Q Consensus 87 D 87 (214)
.
T Consensus 171 ~ 171 (559)
T PRK05563 171 Q 171 (559)
T ss_pred e
Confidence 4
No 133
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.79 E-value=0.081 Score=46.70 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=30.1
Q ss_pred ccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 177 PITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 177 ~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
++|...+..+.+-|.-.|--+.+..|+.+|+..|++
T Consensus 387 g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~ 422 (438)
T PTZ00361 387 ELSGADIKAICTEAGLLALRERRMKVTQADFRKAKE 422 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHH
Confidence 457777888888888888888899999999999975
No 134
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.71 E-value=0.07 Score=49.20 Aligned_cols=57 Identities=25% Similarity=0.311 Sum_probs=41.2
Q ss_pred CCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceE-EEEeecCCCCCCCCCcccccccCCCCCCCcccE
Q psy7187 10 DGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCS-VLAAANSVFGRWDDTKGEQNIDFMPTILSRFDM 88 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~-viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL 88 (214)
...|++|||++.|+....++|+..||+- |..+. |++|.+|. +|+..|+||+ .
T Consensus 124 r~KViIIDEah~Ls~~AaNALLKTLEEP-------------P~~v~FILaTtep~-------------kLlpTIrSRC-q 176 (700)
T PRK12323 124 RFKVYMIDEVHMLTNHAFNAMLKTLEEP-------------PEHVKFILATTDPQ-------------KIPVTVLSRC-L 176 (700)
T ss_pred CceEEEEEChHhcCHHHHHHHHHhhccC-------------CCCceEEEEeCChH-------------hhhhHHHHHH-H
Confidence 4569999999999999999999999971 22333 34444442 3778899998 5
Q ss_pred EEEec
Q psy7187 89 IFIIK 93 (214)
Q Consensus 89 ~~~~~ 93 (214)
.|.+.
T Consensus 177 ~f~f~ 181 (700)
T PRK12323 177 QFNLK 181 (700)
T ss_pred hcccC
Confidence 55443
No 135
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.68 E-value=0.07 Score=42.27 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHH
Q psy7187 145 PRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEAL 211 (214)
Q Consensus 145 p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai 211 (214)
..+++++.++|.+.+ +=++|.+..++.-+.+.|.-.++ .|+.+-+++++
T Consensus 177 ~~~~~~~l~~L~~~~-----------------~gn~r~L~~~l~~~~~~~~~~~~-~i~~~~~~~~~ 225 (226)
T TIGR03420 177 LQLPDEVADYLLRHG-----------------SRDMGSLMALLDALDRASLAAKR-KITIPFVKEVL 225 (226)
T ss_pred CCCCHHHHHHHHHhc-----------------cCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHh
Confidence 358889888887743 12688899998888887766664 69999998875
No 136
>PRK06620 hypothetical protein; Validated
Probab=95.57 E-value=0.22 Score=39.60 Aligned_cols=48 Identities=15% Similarity=0.021 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHH
Q psy7187 146 RLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEAL 211 (214)
Q Consensus 146 ~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai 211 (214)
.+++++.++|.+... =+.|.++.++..-.+.|.... ..||.+.+++++
T Consensus 166 ~l~~ev~~~L~~~~~-----------------~d~r~l~~~l~~l~~~~~~~~-~~it~~~~~~~l 213 (214)
T PRK06620 166 TISRQIIDFLLVNLP-----------------REYSKIIEILENINYFALISK-RKITISLVKEVL 213 (214)
T ss_pred CCCHHHHHHHHHHcc-----------------CCHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHh
Confidence 589999999977542 256777776666555555555 469999998875
No 137
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.47 E-value=0.21 Score=42.45 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=25.0
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
+++.|++|||++.++....+.|+..||+
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~ 143 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEE 143 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhC
Confidence 5677999999999999999999999976
No 138
>PHA01747 putative ATP-dependent protease
Probab=95.45 E-value=0.03 Score=47.91 Aligned_cols=87 Identities=15% Similarity=0.214 Sum_probs=57.4
Q ss_pred cceeeccCCceEeeccCCCCC----HHHHHHHHHhhhcCeEEEEecceEE--EEeCceEEEEeecCCC---CCCCCCc--
Q psy7187 3 GGAMVLADGGVVCIDEFDKMR----EDDRVAIHEAMEQQTISIAKAGITT--TLNSRCSVLAAANSVF---GRWDDTK-- 71 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~~~----~~~~~~L~e~me~~~i~i~~~g~~~--~lpa~~~viaa~Np~~---g~~~~~~-- 71 (214)
.|++-+.| ++++||+..+. ++..+.|..=||+|..+-.+.+.+. +..+.++++-..|+.. +.|+...
T Consensus 237 ~GLVg~~D--~VaFDEVa~i~f~~~kdiv~IMKdYMesG~FsRG~~~~ss~~sI~a~asiVf~GNin~~~l~~~~~~~~l 314 (425)
T PHA01747 237 LGLVFLSN--GLIFDEIQTWKDSNMRAINSTLSTGMENCVWTRGAGTESDAATIVRCIPIIFAGNPDSSTLDTYQTPNYI 314 (425)
T ss_pred eeEEeecc--EEEEEccccccCCCHHHHHHHHHHHhhcceeecCCCCcccchhhccceeEEEecCCCCccccccccchhH
Confidence 45555544 58999999965 3577788888999998876553333 7788899999999872 2232211
Q ss_pred -c--cc--cc-cCCCCCCCcccEEEE
Q psy7187 72 -G--EQ--NI-DFMPTILSRFDMIFI 91 (214)
Q Consensus 72 -~--~~--~~-~l~~~lldRFDL~~~ 91 (214)
. .+ -. .+..+|||||.+.-+
T Consensus 315 ~~~Lp~~~~~r~~~sA~LDRIhi~g~ 340 (425)
T PHA01747 315 KNYLVSYELFQSLTKAILDRIAIIIV 340 (425)
T ss_pred HHhcchhhhhcccchHHhhhhhhccc
Confidence 0 11 11 136799999984443
No 139
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.43 E-value=0.35 Score=44.33 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=42.0
Q ss_pred ccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCc-eEEEEeecCCCCCCCCCcccccccCCCCCCCcc
Q psy7187 8 LADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSR-CSVLAAANSVFGRWDDTKGEQNIDFMPTILSRF 86 (214)
Q Consensus 8 la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~-~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRF 86 (214)
.+...|++|||.+.|+.+..++|+..||+- |.. +.|+++.+|. ++.+.|.||.
T Consensus 116 ~~~~KVvIIDEah~Lt~~A~NALLK~LEEp-------------p~~~~fIL~tte~~-------------kll~TI~SRc 169 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAGFNALLKIVEEP-------------PEHLIFIFATTEPE-------------KVLPTIRSRT 169 (584)
T ss_pred cCCceEEEEECCCcCCHHHHHHHHHHHhcC-------------CCCeEEEEEeCChH-------------hhHHHHHHhc
Confidence 356789999999999999999999999971 222 3344555552 3778888886
Q ss_pred cEEEEe
Q psy7187 87 DMIFII 92 (214)
Q Consensus 87 DL~~~~ 92 (214)
..|.+
T Consensus 170 -~~~~F 174 (584)
T PRK14952 170 -HHYPF 174 (584)
T ss_pred -eEEEe
Confidence 44444
No 140
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.30 E-value=0.31 Score=38.82 Aligned_cols=134 Identities=14% Similarity=0.243 Sum_probs=77.7
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcc--
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRF-- 86 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRF-- 86 (214)
.++++++|||++.++...+..|+..|+.-. ..| ...++.+++.... ...+...|.+||
T Consensus 89 ~~~~~liiDdi~~l~~~~~~~L~~~~~~~~----~~~-------~~~vl~~~~~~~~---------~~~l~~~L~sr~~~ 148 (227)
T PRK08903 89 PEAELYAVDDVERLDDAQQIALFNLFNRVR----AHG-------QGALLVAGPAAPL---------ALPLREDLRTRLGW 148 (227)
T ss_pred ccCCEEEEeChhhcCchHHHHHHHHHHHHH----HcC-------CcEEEEeCCCCHH---------hCCCCHHHHHHHhc
Confidence 356899999999999888888988886411 011 1223333322111 112557778898
Q ss_pred cEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCC
Q psy7187 87 DMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGS 166 (214)
Q Consensus 87 DL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~ 166 (214)
.+.+.+....+ ..+.. ++. ++ +++ ....+++++.++|.+.+
T Consensus 149 ~~~i~l~pl~~-~~~~~----~l~-----------------------~~---~~~-~~v~l~~~al~~L~~~~------- 189 (227)
T PRK08903 149 GLVYELKPLSD-ADKIA----ALK-----------------------AA---AAE-RGLQLADEVPDYLLTHF------- 189 (227)
T ss_pred CeEEEecCCCH-HHHHH----HHH-----------------------HH---HHH-cCCCCCHHHHHHHHHhc-------
Confidence 45555543332 21211 111 11 111 13468888888887632
Q ss_pred CcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 167 KEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 167 ~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
+=++|.+..++.-=.+.|.... ..||...+++++.
T Consensus 190 ----------~gn~~~l~~~l~~l~~~~~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 190 ----------RRDMPSLMALLDALDRYSLEQK-RPVTLPLLREMLA 224 (227)
T ss_pred ----------cCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Confidence 2257777777776555665555 6899999988764
No 141
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.23 E-value=0.49 Score=43.51 Aligned_cols=29 Identities=24% Similarity=0.200 Sum_probs=26.5
Q ss_pred ccCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 8 LADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 8 la~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
.+...|++|||.+.|+....++|+..||+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a~naLLKtLEe 158 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAAFNALLKTLEE 158 (598)
T ss_pred cCCcEEEEEEChHhCCHHHHHHHHHHHHh
Confidence 46778999999999999999999999996
No 142
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.11 E-value=0.14 Score=46.60 Aligned_cols=76 Identities=14% Similarity=0.112 Sum_probs=59.2
Q ss_pred cceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC-CCCCCCCcccccccCCCC
Q psy7187 3 GGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV-FGRWDDTKGEQNIDFMPT 81 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~-~g~~~~~~~~~~~~l~~~ 81 (214)
-|+|..|++|++=.=|+-|.+.+.+..|+.+-++|.|... +....+|.+-.|||.+|-. +..|.. -+--.+
T Consensus 248 ~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~~--~~~~~i~~D~vIiaHsNE~E~~~F~~------nk~nEA 319 (644)
T PRK15455 248 SGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNGT--EGIGAIPFDGIILAHSNESEWQTFRN------NKNNEA 319 (644)
T ss_pred CchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccCC--CCcceeccceeEEecCCHHHHHHHhc------Cccchh
Confidence 4999999998886669999999999999999999998542 2234568899999999986 333322 123578
Q ss_pred CCCcc
Q psy7187 82 ILSRF 86 (214)
Q Consensus 82 lldRF 86 (214)
|+||+
T Consensus 320 ~~DRi 324 (644)
T PRK15455 320 FLDRI 324 (644)
T ss_pred hhceE
Confidence 99997
No 143
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.10 E-value=0.3 Score=44.21 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=25.5
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
+...|++|||.++|+....++|+..||+
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEe 145 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEE 145 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhC
Confidence 4567999999999999999999999997
No 144
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.07 E-value=0.31 Score=44.49 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=26.0
Q ss_pred ccCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 8 LADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 8 la~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
.+...|++|||++.|+....++|+..||+
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a~naLLK~LEe 145 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSAFNALLKTIEE 145 (563)
T ss_pred cCCCEEEEEEChhhcCHHHHHHHHHhhcc
Confidence 35678999999999999999999999986
No 145
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.01 E-value=0.21 Score=47.66 Aligned_cols=124 Identities=14% Similarity=0.110 Sum_probs=73.2
Q ss_pred CCceEeeccCCCCCH--------HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCC
Q psy7187 10 DGGVVCIDEFDKMRE--------DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPT 81 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~--------~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~ 81 (214)
.+.|+||||++.+-. +..+.|..+++.|. ..+|||+++.+-+ ..+...+.
T Consensus 271 ~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~---------------l~~IgaTt~~ey~-------~~ie~D~a 328 (821)
T CHL00095 271 NNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGE---------------LQCIGATTLDEYR-------KHIEKDPA 328 (821)
T ss_pred CCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCC---------------cEEEEeCCHHHHH-------HHHhcCHH
Confidence 346899999975432 24456666666543 5668888885210 11235678
Q ss_pred CCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCC-CCCHHHHHHHHHHHH
Q psy7187 82 ILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGP-RLTHEAGEKLKNRYV 160 (214)
Q Consensus 82 lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p-~ls~ea~~~i~~~y~ 160 (214)
|..||..+ .+.. ++.+....|.+.+......- ..-.++.+.+.....++..++.- .+++.|.++|..+..
T Consensus 329 L~rRf~~I-~v~e-p~~~e~~aILr~l~~~~e~~-------~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a 399 (821)
T CHL00095 329 LERRFQPV-YVGE-PSVEETIEILFGLRSRYEKH-------HNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGS 399 (821)
T ss_pred HHhcceEE-ecCC-CCHHHHHHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHH
Confidence 89999764 3333 33333334444433332211 11127788888888888776432 467788888888776
Q ss_pred HHhc
Q psy7187 161 LMRN 164 (214)
Q Consensus 161 ~~r~ 164 (214)
..|-
T Consensus 400 ~~~~ 403 (821)
T CHL00095 400 RVRL 403 (821)
T ss_pred HHHh
Confidence 5543
No 146
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.94 E-value=0.4 Score=43.01 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=25.3
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
+...|++|||++.|+.+..++|+..||+
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEe 145 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEE 145 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhc
Confidence 5668999999999999999999999986
No 147
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.89 E-value=0.13 Score=43.14 Aligned_cols=55 Identities=29% Similarity=0.488 Sum_probs=42.1
Q ss_pred cCCceEeeccCCCC-CHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCccc
Q psy7187 9 ADGGVVCIDEFDKM-REDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFD 87 (214)
Q Consensus 9 a~~Gv~~iDE~~~~-~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFD 87 (214)
+..+|++|||++.+ ..+....|+..|++. +..+.+|.++|... .+.+++.+||.
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~-------------~~~~~~Ilt~n~~~------------~l~~~l~sR~~ 153 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAY-------------SKNCSFIITANNKN------------GIIEPLRSRCR 153 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhc-------------CCCceEEEEcCChh------------hchHHHHhhce
Confidence 46789999999999 666778888888852 34567788887532 27789999996
Q ss_pred E
Q psy7187 88 M 88 (214)
Q Consensus 88 L 88 (214)
.
T Consensus 154 ~ 154 (316)
T PHA02544 154 V 154 (316)
T ss_pred E
Confidence 4
No 148
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.89 E-value=0.31 Score=44.63 Aligned_cols=53 Identities=21% Similarity=0.249 Sum_probs=39.8
Q ss_pred ccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceE-EEEeecCCCCCCCCCcccccccCCCCCCCcc
Q psy7187 8 LADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCS-VLAAANSVFGRWDDTKGEQNIDFMPTILSRF 86 (214)
Q Consensus 8 la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~-viaa~Np~~g~~~~~~~~~~~~l~~~lldRF 86 (214)
.+...|++|||.+.|+....++|+..||+- |..+. |++|.+|. +|+..|+||+
T Consensus 117 ~~~~KVvIIdev~~Lt~~a~naLLk~LEep-------------p~~~~fIl~t~~~~-------------kl~~tI~SRc 170 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNAFNALLKTLEEP-------------PPHVKFIFATTEPH-------------KVPITILSRC 170 (576)
T ss_pred cCCceEEEEEChhhCCHHHHHHHHHHHHcC-------------CCCeEEEEEeCChh-------------hhhHHHHHhh
Confidence 356789999999999999999999999962 23333 34554552 3778888887
No 149
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.87 E-value=1.1 Score=40.38 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=25.6
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
++..|++|||.+.++.+.++.|+..||+
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEe 142 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEE 142 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHh
Confidence 5678999999999999999999999987
No 150
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.82 E-value=0.99 Score=38.72 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=24.6
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
++..|++|||++.+.....+.|+..||+
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~ 134 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEE 134 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhC
Confidence 4668999999999999888999988875
No 151
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.70 E-value=0.72 Score=44.05 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=26.0
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
....|++|||+++|+....++|+..||+
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEE 146 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEE 146 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhC
Confidence 5668999999999999999999999997
No 152
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.64 E-value=0.34 Score=44.41 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=26.1
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
++.+|++|||.+.|+.+..++|+..||+
T Consensus 118 ~~~KVIIIDEad~Lt~~A~NaLLKtLEE 145 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTSAWNALLKTLEE 145 (605)
T ss_pred CCcEEEEEechHhCCHHHHHHHHHHHHh
Confidence 5789999999999999999999999997
No 153
>PRK09087 hypothetical protein; Validated
Probab=94.40 E-value=1.1 Score=35.90 Aligned_cols=50 Identities=14% Similarity=0.021 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 146 RLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 146 ~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
.+++++.++|.+... =++|.++.++.--.+.|...+ ..||..-+++++.-
T Consensus 172 ~l~~ev~~~La~~~~-----------------r~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~ 221 (226)
T PRK09087 172 YVDPHVVYYLVSRME-----------------RSLFAAQTIVDRLDRLALERK-SRITRALAAEVLNE 221 (226)
T ss_pred CCCHHHHHHHHHHhh-----------------hhHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHh
Confidence 588999999977553 146666654433334444444 45899988888753
No 154
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.38 E-value=0.47 Score=44.74 Aligned_cols=66 Identities=26% Similarity=0.357 Sum_probs=42.7
Q ss_pred CCceEeeccCCCCC------------HHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCccccccc
Q psy7187 10 DGGVVCIDEFDKMR------------EDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNID 77 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~------------~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~ 77 (214)
...|+|+||++.+- ....+.|+.-|+. . .-+.+..||||+|...-
T Consensus 546 ~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg---------~--~~~~~v~vI~aTn~~~~------------ 602 (733)
T TIGR01243 546 APAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDG---------I--QELSNVVVIAATNRPDI------------ 602 (733)
T ss_pred CCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhc---------c--cCCCCEEEEEeCCChhh------------
Confidence 34799999998762 2344556666652 1 01346889999987532
Q ss_pred CCCCCC--CcccEEEEecCCCCcc
Q psy7187 78 FMPTIL--SRFDMIFIIKDEHDET 99 (214)
Q Consensus 78 l~~~ll--dRFDL~~~~~~~~~~~ 99 (214)
|.++++ +|||..+.+. .++.+
T Consensus 603 ld~allRpgRfd~~i~v~-~Pd~~ 625 (733)
T TIGR01243 603 LDPALLRPGRFDRLILVP-PPDEE 625 (733)
T ss_pred CCHhhcCCCccceEEEeC-CcCHH
Confidence 777777 5999887764 34433
No 155
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=94.29 E-value=0.57 Score=41.33 Aligned_cols=165 Identities=15% Similarity=0.194 Sum_probs=90.9
Q ss_pred cceeeccCCceEeeccCCCCC---HHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCC--CC-CCC---cc-
Q psy7187 3 GGAMVLADGGVVCIDEFDKMR---EDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFG--RW-DDT---KG- 72 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~~~---~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g--~~-~~~---~~- 72 (214)
.|++..-| ++++||+...+ ++....|..-||+|..+..+. +..+.++++-..|.... .. ... .+
T Consensus 254 ~GlV~~~D--~VafDEv~~i~f~d~d~i~imK~YMesG~fsRG~~----~i~a~as~vf~GNi~~~v~~~~~~~~lf~~l 327 (457)
T PF13337_consen 254 IGLVGRWD--VVAFDEVAGIKFKDKDEIQIMKDYMESGSFSRGKE----EINADASMVFVGNINQSVENMLKTSHLFEPL 327 (457)
T ss_pred ceeeeecc--EEEEEeccCcccCChHHHHHHHHHHhccceeeccc----ccccceeEEEEcCcCCcchhccccchhhhhc
Confidence 34444433 68999999876 556688899999999887442 66777888888887621 11 000 01
Q ss_pred cccccCCCCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHH
Q psy7187 73 EQNIDFMPTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAG 152 (214)
Q Consensus 73 ~~~~~l~~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~ 152 (214)
.+.++ ..++||||..++.--+.+- +.... ....--+..+.+-+++..-|.. .-.
T Consensus 328 P~~~~-DsAflDRiH~~iPGWeiPk------~~~e~------------~t~~~gl~~Dy~aE~l~~LR~~-------~~~ 381 (457)
T PF13337_consen 328 PEEMR-DSAFLDRIHGYIPGWEIPK------IRPEM------------FTNGYGLIVDYFAEILHELRKQ-------SYS 381 (457)
T ss_pred CHHHH-HHHHHhHhheeccCccccc------cCHHH------------ccCCceeeHHHHHHHHHHHHHH-------HHH
Confidence 22233 5688888865553211111 00000 0011123344444444333321 011
Q ss_pred HHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCC-CCCcHHHHHHHHh
Q psy7187 153 EKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLE-PFAIDSHVTEALR 212 (214)
Q Consensus 153 ~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r-~~V~~~Dv~~Ai~ 212 (214)
..+.+++. ....++.|...++-|+..+.-||-.= ..++.+|+++.++
T Consensus 382 ~~~~~~~~-------------lg~~~~~RD~~AV~kt~SgllKLL~P~~~~~~ee~~~~l~ 429 (457)
T PF13337_consen 382 DAVDKYFK-------------LGSNLSQRDTKAVKKTVSGLLKLLFPHGEFTKEELEECLR 429 (457)
T ss_pred HHHHhhEe-------------eCCCcchhhHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHH
Confidence 12211110 11346788888888998888888554 4788888877654
No 156
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.25 E-value=0.85 Score=42.79 Aligned_cols=57 Identities=23% Similarity=0.265 Sum_probs=41.9
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceE-EEEeecCCCCCCCCCcccccccCCCCCCCccc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCS-VLAAANSVFGRWDDTKGEQNIDFMPTILSRFD 87 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~-viaa~Np~~g~~~~~~~~~~~~l~~~lldRFD 87 (214)
+...|++|||.+.|.....++|+..||+- |..+. |++|.+|. .|++.+++|+-
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEP-------------P~~tifILaTte~~-------------KLl~TI~SRcq 170 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEP-------------PKHVIFILATTEVH-------------KIPLTILSRVQ 170 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcC-------------CCceEEEEEcCChh-------------hhhHHHHhhce
Confidence 56679999999999999999999999963 22333 44554552 37788999994
Q ss_pred EEEEe
Q psy7187 88 MIFII 92 (214)
Q Consensus 88 L~~~~ 92 (214)
.+.+
T Consensus 171 -~ieF 174 (725)
T PRK07133 171 -RFNF 174 (725)
T ss_pred -eEEc
Confidence 4444
No 157
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.25 E-value=0.58 Score=40.82 Aligned_cols=25 Identities=8% Similarity=0.199 Sum_probs=16.1
Q ss_pred CceEeeccCCCCCHH--HHHHHHHhhh
Q psy7187 11 GGVVCIDEFDKMRED--DRVAIHEAME 35 (214)
Q Consensus 11 ~Gv~~iDE~~~~~~~--~~~~L~e~me 35 (214)
-.+++|||++.+... .+..|...+.
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n 226 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFN 226 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHH
Confidence 468999999987543 3444554443
No 158
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=94.16 E-value=0.35 Score=30.65 Aligned_cols=64 Identities=19% Similarity=0.173 Sum_probs=46.3
Q ss_pred CCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHH
Q psy7187 126 ELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDS 205 (214)
Q Consensus 126 ~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~ 205 (214)
.+|...+++.+...-. ...+++++...+...... -++.|.+-|..+|.-+.|.+|+.+
T Consensus 2 ~lP~a~vkri~k~~~~--~~~vs~ea~~~i~~a~e~--------------------Fi~~l~~~A~~~a~~~~rkti~~~ 59 (65)
T PF00808_consen 2 SLPLARVKRIMKSDPD--VMRVSKEAVEAIAKAAEE--------------------FIQYLAKEANEIAQRDKRKTITYE 59 (65)
T ss_dssp SS-HHHHHHHHHHTST--TSEE-HHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHTTSSEE-HH
T ss_pred CCChHHHHHHhccCCC--ccchhHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHcCCCccCHH
Confidence 3566777777664421 124789998888776643 266888999999999999999999
Q ss_pred HHHHHH
Q psy7187 206 HVTEAL 211 (214)
Q Consensus 206 Dv~~Ai 211 (214)
||..|+
T Consensus 60 Dv~~Av 65 (65)
T PF00808_consen 60 DVAKAV 65 (65)
T ss_dssp HHHHHH
T ss_pred HHHHHC
Confidence 999985
No 159
>PF13148 DUF3987: Protein of unknown function (DUF3987)
Probab=94.12 E-value=0.15 Score=43.89 Aligned_cols=183 Identities=19% Similarity=0.216 Sum_probs=104.2
Q ss_pred CceEeeccCCCC----CH----HHHHHHHHhhhcCeEEEEecceE-EEE-eCceEEEEeecCC-C-CCCCCCcccccccC
Q psy7187 11 GGVVCIDEFDKM----RE----DDRVAIHEAMEQQTISIAKAGIT-TTL-NSRCSVLAAANSV-F-GRWDDTKGEQNIDF 78 (214)
Q Consensus 11 ~Gv~~iDE~~~~----~~----~~~~~L~e~me~~~i~i~~~g~~-~~l-pa~~~viaa~Np~-~-g~~~~~~~~~~~~l 78 (214)
++.++.||+..+ .. ...+.|+++-..+.+++.|.+.. ..+ ....+|++++-|. . ..+... ....-.
T Consensus 150 ~~l~~~dE~~~~~~~~~~~~~~~~~~~ll~~~dg~~~~~~R~~~~~~~i~~~~lsi~~~~QP~~l~~~~~~~--~~~~~~ 227 (378)
T PF13148_consen 150 GLLLFSDEGGGLLNSMGRYGGGSDRDLLLKAWDGEPYSIDRKSRGSIYIENPRLSILGGIQPDVLKREILSA--EDPEFR 227 (378)
T ss_pred eEEEEchhHHHHHHHhhcccCCccHHHHHHHhCCCCeeeeeccCCcccCCCceEEEEeccChHHHHHHHhhh--hccccc
Confidence 345677776542 22 45678889999899999887642 333 3678899988885 1 211000 001114
Q ss_pred CCCCCCcccEEEEecCCCCccc-----cHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhH-----hccCCCCC
Q psy7187 79 MPTILSRFDMIFIIKDEHDETR-----DITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCR-----MRCGPRLT 148 (214)
Q Consensus 79 ~~~lldRFDL~~~~~~~~~~~~-----d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar-----~~~~p~ls 148 (214)
..-|++|| | |.+.+...... +.......+... .+.++....... ....-.++
T Consensus 228 ~~Gll~Rf-L-~~~p~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~i~~l~~~~~~~~~~~~~~l~ls 289 (378)
T PF13148_consen 228 GDGLLARF-L-FVIPDSRKGRRFEFPVPEPIDDEALEAY----------------HERIKELLDWPPEDGSDEPIVLELS 289 (378)
T ss_pred CCChHhhe-e-eeccCcccccccccCCCCcccHHHHHHH----------------HHHHHHHHhhhhcccCCCCeEEecC
Confidence 56788999 7 55544321110 000000000000 012222222221 00112689
Q ss_pred HHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccC-----CCCCCcHHHHHHHHhc
Q psy7187 149 HEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQ-----LEPFAIDSHVTEALRL 213 (214)
Q Consensus 149 ~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~-----~r~~V~~~Dv~~Ai~l 213 (214)
++|.+++.++|..+............-..+-.|.-..+.|+|--++-++ ....|+.+++..|+.|
T Consensus 290 ~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~RlA~ilh~~~~~~~~~~~~I~~~~~~~Ai~l 359 (378)
T PF13148_consen 290 DEAKELFREWYNELENELRQPGGDLAMRSFASKAAEQALRLALILHLFESGGSPPSTEISAETMERAIRL 359 (378)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCEECHHHHHHHHHH
Confidence 9999999999987765542110110011234567788999999999999 8889999999999876
No 160
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.07 E-value=0.49 Score=40.85 Aligned_cols=138 Identities=16% Similarity=0.117 Sum_probs=83.8
Q ss_pred ceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccEEEE
Q psy7187 12 GVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDMIFI 91 (214)
Q Consensus 12 Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL~~~ 91 (214)
=|+.+||++.+-+...+.|++...-.. .. ..+..+++.+|-.. ....+.+.+-|+|...-+
T Consensus 125 ~IvvLDEid~L~~~~~~~LY~L~r~~~--------~~--~~~v~vi~i~n~~~---------~~~~ld~rv~s~l~~~~I 185 (366)
T COG1474 125 VIVILDEVDALVDKDGEVLYSLLRAPG--------EN--KVKVSIIAVSNDDK---------FLDYLDPRVKSSLGPSEI 185 (366)
T ss_pred EEEEEcchhhhccccchHHHHHHhhcc--------cc--ceeEEEEEEeccHH---------HHHHhhhhhhhccCccee
Confidence 368899999988775445554433211 11 44678888887751 112245555555544333
Q ss_pred ecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCC
Q psy7187 92 IKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGE 171 (214)
Q Consensus 92 ~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~ 171 (214)
.+.+.+ ..+|.+ |+..+... +- -...+++++.+++...+...
T Consensus 186 ~F~pY~---a~el~~-Il~~R~~~-----------------------~~--~~~~~~~~vl~lia~~~a~~--------- 227 (366)
T COG1474 186 VFPPYT---AEELYD-ILRERVEE-----------------------GF--SAGVIDDDVLKLIAALVAAE--------- 227 (366)
T ss_pred eeCCCC---HHHHHH-HHHHHHHh-----------------------hc--cCCCcCccHHHHHHHHHHHc---------
Confidence 333322 223322 22222111 10 12357888888887766531
Q ss_pred CccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHH
Q psy7187 172 KKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEAL 211 (214)
Q Consensus 172 ~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai 211 (214)
.+ ..|.-..++|.|--+|.-+++..|+++||..|.
T Consensus 228 ----~G-DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~ 262 (366)
T COG1474 228 ----SG-DARKAIDILRRAGEIAEREGSRKVSEDHVREAQ 262 (366)
T ss_pred ----Cc-cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHH
Confidence 11 688889999999999999999999999999984
No 161
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=94.00 E-value=0.74 Score=29.95 Aligned_cols=47 Identities=19% Similarity=0.037 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 146 RLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 146 ~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
.+++++...+.++.-. -+..+..-|...|+-++|++|+.+|+.-|++
T Consensus 19 ~~~~da~~~l~~~~e~--------------------fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~ 65 (72)
T cd07981 19 QLDPDVEELLLEIADD--------------------FVDDVVEDACRLAKHRKSDTLEVKDVQLHLE 65 (72)
T ss_pred CcCHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 6899999998876643 1568889999999999999999999998864
No 162
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=93.95 E-value=0.26 Score=43.65 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=14.8
Q ss_pred ceEeeccCCCCCHH--HHHHHHHhh
Q psy7187 12 GVVCIDEFDKMRED--DRVAIHEAM 34 (214)
Q Consensus 12 Gv~~iDE~~~~~~~--~~~~L~e~m 34 (214)
-+++|||++.+..+ .++.|+..+
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~ 237 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTF 237 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHH
Confidence 48999999987542 334444433
No 163
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.84 E-value=0.69 Score=47.67 Aligned_cols=64 Identities=8% Similarity=0.170 Sum_probs=42.0
Q ss_pred ceEeeccCCCCCHHH-----HHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCC--
Q psy7187 12 GVVCIDEFDKMREDD-----RVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILS-- 84 (214)
Q Consensus 12 Gv~~iDE~~~~~~~~-----~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lld-- 84 (214)
-|++||||+.+.... +..|+.-|....-. .-.....||||+|...- |.++|+-
T Consensus 1734 CIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~--------~s~~~VIVIAATNRPD~------------LDPALLRPG 1793 (2281)
T CHL00206 1734 CIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCER--------CSTRNILVIASTHIPQK------------VDPALIAPN 1793 (2281)
T ss_pred eEEEEEchhhcCCCccceehHHHHHHHhcccccc--------CCCCCEEEEEeCCCccc------------CCHhHcCCC
Confidence 478999999987642 45555556421100 00224789999997532 7888886
Q ss_pred cccEEEEecCC
Q psy7187 85 RFDMIFIIKDE 95 (214)
Q Consensus 85 RFDL~~~~~~~ 95 (214)
|||-.+.+..+
T Consensus 1794 RFDR~I~Ir~P 1804 (2281)
T CHL00206 1794 KLNTCIKIRRL 1804 (2281)
T ss_pred CCCeEEEeCCC
Confidence 99988876543
No 164
>KOG2004|consensus
Probab=93.76 E-value=0.18 Score=46.81 Aligned_cols=68 Identities=24% Similarity=0.372 Sum_probs=46.3
Q ss_pred cCCceEeeccCCCCCH----HHHHHHHHhhh-cCeEEEEecceEEEEe---CceEEEEeecCCCCCCCCCcccccccCCC
Q psy7187 9 ADGGVVCIDEFDKMRE----DDRVAIHEAME-QQTISIAKAGITTTLN---SRCSVLAAANSVFGRWDDTKGEQNIDFMP 80 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~----~~~~~L~e~me-~~~i~i~~~g~~~~lp---a~~~viaa~Np~~g~~~~~~~~~~~~l~~ 80 (214)
..+-+++|||++++-. +=-++|+|.|+ +|.-+.. ......| ++..+|||+|-..- ||+
T Consensus 504 t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFl--DHYLdVp~DLSkVLFicTAN~idt------------IP~ 569 (906)
T KOG2004|consen 504 TENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFL--DHYLDVPVDLSKVLFICTANVIDT------------IPP 569 (906)
T ss_pred CCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchh--hhccccccchhheEEEEecccccc------------CCh
Confidence 4667899999999764 23468999998 4443331 1111222 24789999998743 999
Q ss_pred CCCCcccEEE
Q psy7187 81 TILSRFDMIF 90 (214)
Q Consensus 81 ~lldRFDL~~ 90 (214)
||+||..++=
T Consensus 570 pLlDRMEvIe 579 (906)
T KOG2004|consen 570 PLLDRMEVIE 579 (906)
T ss_pred hhhhhhheee
Confidence 9999987543
No 165
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=93.61 E-value=0.77 Score=41.36 Aligned_cols=54 Identities=24% Similarity=0.235 Sum_probs=43.0
Q ss_pred ccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcc
Q psy7187 8 LADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRF 86 (214)
Q Consensus 8 la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRF 86 (214)
.+.-.|..|||...++...-++|+..+|+---.| .-|+||++|. ++|.-++||.
T Consensus 117 ~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV------------~FIlATTe~~-------------Kip~TIlSRc 170 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHV------------KFILATTEPQ-------------KIPNTILSRC 170 (515)
T ss_pred cccceEEEEecHHhhhHHHHHHHhcccccCccCe------------EEEEecCCcC-------------cCchhhhhcc
Confidence 3455799999999999999999999999733222 4578888885 4888999987
No 166
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.61 E-value=0.21 Score=47.92 Aligned_cols=122 Identities=15% Similarity=0.154 Sum_probs=70.2
Q ss_pred CceEeeccCCCCCH--------HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCC
Q psy7187 11 GGVVCIDEFDKMRE--------DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTI 82 (214)
Q Consensus 11 ~Gv~~iDE~~~~~~--------~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~l 82 (214)
+.|+||||++.+.. +..+.|...++.| +..+|||+++.+-+ ..+++.+++
T Consensus 267 ~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g---------------~i~~IgaTt~~e~r-------~~~~~d~al 324 (852)
T TIGR03346 267 QIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG---------------ELHCIGATTLDEYR-------KYIEKDAAL 324 (852)
T ss_pred CeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC---------------ceEEEEeCcHHHHH-------HHhhcCHHH
Confidence 46999999998752 2344444444332 46788888885211 124578999
Q ss_pred CCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccC-CCCCHHHHHHHHHHHHH
Q psy7187 83 LSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCG-PRLTHEAGEKLKNRYVL 161 (214)
Q Consensus 83 ldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~-p~ls~ea~~~i~~~y~~ 161 (214)
.+||..+. +.. ++.+.... |++......+ ...+-.++.+.+..-+.++..++. -.+++.|.++|......
T Consensus 325 ~rRf~~i~-v~~-p~~~~~~~----iL~~~~~~~e---~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~ 395 (852)
T TIGR03346 325 ERRFQPVF-VDE-PTVEDTIS----ILRGLKERYE---VHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAAR 395 (852)
T ss_pred HhcCCEEE-eCC-CCHHHHHH----HHHHHHHHhc---cccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHH
Confidence 99998643 433 33332222 4443322211 112234566677777777766643 25677888888776654
Q ss_pred Hh
Q psy7187 162 MR 163 (214)
Q Consensus 162 ~r 163 (214)
.|
T Consensus 396 ~~ 397 (852)
T TIGR03346 396 IR 397 (852)
T ss_pred HH
Confidence 43
No 167
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.36 E-value=1.7 Score=40.03 Aligned_cols=29 Identities=28% Similarity=0.269 Sum_probs=26.5
Q ss_pred ccCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 8 LADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 8 la~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
.++..|++|||++.|+.+..+.|+..||+
T Consensus 118 ~~~~kVvIIDEa~~L~~~a~naLLk~LEe 146 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAAFNALLKTLEE 146 (585)
T ss_pred cCCeEEEEEeChHhCCHHHHHHHHHHHhc
Confidence 46789999999999999999999999997
No 168
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.31 E-value=1.1 Score=39.00 Aligned_cols=29 Identities=21% Similarity=0.129 Sum_probs=25.2
Q ss_pred ccCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 8 LADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 8 la~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
.+...|++|||++.|+....+.|+..||+
T Consensus 125 ~~~~kvvIIdea~~l~~~~~~~LLk~LEe 153 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAAFNAFLKTLEE 153 (397)
T ss_pred cCCeEEEEEeChhhCCHHHHHHHHHHHhc
Confidence 35678999999999999888999999985
No 169
>PRK08727 hypothetical protein; Validated
Probab=93.24 E-value=1 Score=36.14 Aligned_cols=49 Identities=12% Similarity=-0.011 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 146 RLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 146 ~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
.+++++.++|.+... =+.|.+..++....+.|....+ .||.+.+++.+.
T Consensus 181 ~l~~e~~~~La~~~~-----------------rd~r~~l~~L~~l~~~~~~~~~-~it~~~~~~~l~ 229 (233)
T PRK08727 181 ALDEAAIDWLLTHGE-----------------RELAGLVALLDRLDRESLAAKR-RVTVPFLRRVLE 229 (233)
T ss_pred CCCHHHHHHHHHhCC-----------------CCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHh
Confidence 578888888876431 1355554444444433333344 799999888764
No 170
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.20 E-value=0.11 Score=45.26 Aligned_cols=59 Identities=25% Similarity=0.357 Sum_probs=45.2
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccE
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDM 88 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL 88 (214)
++..|++|||++.|++...++|+..||+.. +....|++|.||. .+.+.++||+ .
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~------------~~~~fIL~a~~~~-------------~llpTIrSRc-~ 169 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPP------------PRTVWLLCAPSPE-------------DVLPTIRSRC-R 169 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCC------------CCCeEEEEECChH-------------HChHHHHhhC-e
Confidence 566799999999999999999999999722 2235677787773 2778999998 4
Q ss_pred EEEec
Q psy7187 89 IFIIK 93 (214)
Q Consensus 89 ~~~~~ 93 (214)
.+.+.
T Consensus 170 ~i~f~ 174 (394)
T PRK07940 170 HVALR 174 (394)
T ss_pred EEECC
Confidence 45443
No 171
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.09 E-value=1.7 Score=35.18 Aligned_cols=51 Identities=12% Similarity=0.007 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 145 PRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 145 p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
+.+++++.+.|.+.- .+ .+|.+..+...+...|.....+.|+.++|.+|+.
T Consensus 214 ~~~~~~~~~~i~~~s----------------~G-~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~ 264 (269)
T TIGR03015 214 PVFSEGAFDAIHRFS----------------RG-IPRLINILCDRLLLSAFLEEKREIGGEEVREVIA 264 (269)
T ss_pred CCcCHHHHHHHHHHc----------------CC-cccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 357888887776532 11 2677888999999999889999999999999975
No 172
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.00 E-value=0.22 Score=47.81 Aligned_cols=118 Identities=14% Similarity=0.156 Sum_probs=63.4
Q ss_pred ceEeeccCCCCCHH--------HHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCC
Q psy7187 12 GVVCIDEFDKMRED--------DRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTIL 83 (214)
Q Consensus 12 Gv~~iDE~~~~~~~--------~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~ll 83 (214)
-|+||||+..+... ..+.|..+|+.| +..+|||+++.+-+ ..+++.+++.
T Consensus 273 ~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g---------------~l~~IgaTt~~e~r-------~~~~~d~al~ 330 (857)
T PRK10865 273 VILFIDELHTMVGAGKADGAMDAGNMLKPALARG---------------ELHCVGATTLDEYR-------QYIEKDAALE 330 (857)
T ss_pred eEEEEecHHHhccCCCCccchhHHHHhcchhhcC---------------CCeEEEcCCCHHHH-------HHhhhcHHHH
Confidence 48999999988532 345555555443 46788999886311 1245789999
Q ss_pred CcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccC-CCCCHHHHHHHHHHHH
Q psy7187 84 SRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCG-PRLTHEAGEKLKNRYV 160 (214)
Q Consensus 84 dRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~-p~ls~ea~~~i~~~y~ 160 (214)
.||+.++ +.. |+.+.... +++....... ...+-.++.+.+...+..+..++. ..+++.|.+++.....
T Consensus 331 rRf~~i~-v~e-P~~~~~~~----iL~~l~~~~e---~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa 399 (857)
T PRK10865 331 RRFQKVF-VAE-PSVEDTIA----ILRGLKERYE---LHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAAS 399 (857)
T ss_pred hhCCEEE-eCC-CCHHHHHH----HHHHHhhhhc---cCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhc
Confidence 9998654 333 33332222 3333222111 111223445555544444444432 3566777666655443
No 173
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.99 E-value=0.81 Score=42.09 Aligned_cols=25 Identities=4% Similarity=0.308 Sum_probs=17.0
Q ss_pred ceEeeccCCCCCHH--HHHHHHHhhhc
Q psy7187 12 GVVCIDEFDKMRED--DRVAIHEAMEQ 36 (214)
Q Consensus 12 Gv~~iDE~~~~~~~--~~~~L~e~me~ 36 (214)
.++|||||..+..+ ..+.|+..+..
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~ 405 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNT 405 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHH
Confidence 58999999997553 34556665553
No 174
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=92.83 E-value=1.7 Score=38.55 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=26.0
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
++..|++|||++.|+.+..+.|+..||+
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEe 147 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEE 147 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhc
Confidence 6778999999999999999999999996
No 175
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=92.78 E-value=0.84 Score=40.47 Aligned_cols=65 Identities=9% Similarity=0.247 Sum_probs=35.0
Q ss_pred CCceEeeccCCCCCH--HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCccc
Q psy7187 10 DGGVVCIDEFDKMRE--DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFD 87 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~--~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFD 87 (214)
.-.|++|||+..+.. ..++.++..+..-. ..| ...|+++..|- .+...+.+.|.+||.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~----~~~-------k~IIlts~~~p---------~~l~~l~~rL~SR~~ 261 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLH----TEG-------KLIVISSTCAP---------QDLKAMEERLISRFE 261 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHH----HCC-------CcEEEecCCCH---------HHHhhhHHHHHhhhc
Confidence 346999999998854 34455555543211 011 12334433321 011137789999995
Q ss_pred --EEEEecC
Q psy7187 88 --MIFIIKD 94 (214)
Q Consensus 88 --L~~~~~~ 94 (214)
+++.+..
T Consensus 262 ~Gl~~~l~~ 270 (445)
T PRK12422 262 WGIAIPLHP 270 (445)
T ss_pred CCeEEecCC
Confidence 6665543
No 176
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.68 E-value=3.3 Score=38.38 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=26.3
Q ss_pred ccCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 8 LADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 8 la~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
.++..|++|||.+.|+.+..++|+..||+
T Consensus 119 ~~~~KVvIIdea~~Ls~~a~naLLK~LEe 147 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAAFNAFLKTLEE 147 (614)
T ss_pred cCCcEEEEEECcccCCHHHHHHHHHHHhC
Confidence 35678999999999999999999999996
No 177
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=92.54 E-value=0.84 Score=37.65 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=29.6
Q ss_pred ccCHHH-HHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 177 PITVRQ-LEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 177 ~~s~R~-l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
++|-|. -+.+++-|--.|-+++++.|+.+|+..|..
T Consensus 317 g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~al~ 353 (368)
T COG1223 317 GMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKALK 353 (368)
T ss_pred CCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHH
Confidence 345555 478889998899999999999999998864
No 178
>KOG1051|consensus
Probab=92.38 E-value=0.18 Score=48.00 Aligned_cols=55 Identities=13% Similarity=0.156 Sum_probs=44.0
Q ss_pred eccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC
Q psy7187 7 VLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV 63 (214)
Q Consensus 7 ~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~ 63 (214)
-.--.-|+++||+++.+++++..|+++|+.|.++=.. |....+. ++.||.|+|--
T Consensus 657 rrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~-Gr~Vd~k-N~I~IMTsn~~ 711 (898)
T KOG1051|consen 657 KRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSH-GREVDFK-NAIFIMTSNVG 711 (898)
T ss_pred hcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCC-CcEeecc-ceEEEEecccc
Confidence 3344569999999999999999999999999998543 3344443 69999999884
No 179
>KOG0734|consensus
Probab=92.20 E-value=0.75 Score=41.53 Aligned_cols=36 Identities=17% Similarity=0.043 Sum_probs=28.2
Q ss_pred cccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHH
Q psy7187 176 IPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEAL 211 (214)
Q Consensus 176 ~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai 211 (214)
-++|-.-++.|+-.|--.|..++.+.|+..|++.|.
T Consensus 503 ~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~ak 538 (752)
T KOG0734|consen 503 PGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAK 538 (752)
T ss_pred CCCchHHHHHHHHHHHHHHHhcCcccccHHHHhhhh
Confidence 456667777888888888888888888888887763
No 180
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.83 E-value=0.96 Score=38.64 Aligned_cols=137 Identities=20% Similarity=0.325 Sum_probs=78.2
Q ss_pred CCceEeeccCCCCCHH------------HHHHHHHhhhcCeEEEEecceEEEEeCce-EEEEeecCCCCCCCCCcccccc
Q psy7187 10 DGGVVCIDEFDKMRED------------DRVAIHEAMEQQTISIAKAGITTTLNSRC-SVLAAANSVFGRWDDTKGEQNI 76 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~------------~~~~L~e~me~~~i~i~~~g~~~~lpa~~-~viaa~Np~~g~~~~~~~~~~~ 76 (214)
+.||+|||||++.... ++--|+ |+=+|+.--.|.|.+.| +. .+||+ |-|.-.| ..
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlL-PlvEGstV~TKyG~VkT---dHILFIas-----GAFh~sK---PS 317 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLL-PLVEGSTVSTKYGPVKT---DHILFIAS-----GAFHVAK---PS 317 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhccccc-ccccCceeecccccccc---ceEEEEec-----CceecCC---hh
Confidence 5699999999986442 222233 33345555556665433 33 33443 3332221 12
Q ss_pred cCCCCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhc-cCCCCCHHHHHHH
Q psy7187 77 DFMPTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMR-CGPRLTHEAGEKL 155 (214)
Q Consensus 77 ~l~~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~-~~p~ls~ea~~~i 155 (214)
.|-+.|=.||.+.+-+..-... | -.+||- +-...+++.|.+.-+.. +.-.|++++.+.|
T Consensus 318 DLiPELQGRfPIRVEL~~Lt~~--D---f~rILt---------------ep~~sLikQY~aLlkTE~v~l~FtddaI~~i 377 (444)
T COG1220 318 DLIPELQGRFPIRVELDALTKE--D---FERILT---------------EPKASLIKQYKALLKTEGVELEFTDDAIKRI 377 (444)
T ss_pred hcChhhcCCCceEEEcccCCHH--H---HHHHHc---------------CcchHHHHHHHHHHhhcCeeEEecHHHHHHH
Confidence 3667777899888877433211 1 122222 11345788888766642 3457899999999
Q ss_pred HHHHHHHhcCCCcCCCCccccccCHHHHHHHH
Q psy7187 156 KNRYVLMRNGSKEDGEKKLNIPITVRQLEAIV 187 (214)
Q Consensus 156 ~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~li 187 (214)
........... ..+..|-|++++
T Consensus 378 AeiA~~vN~~~---------ENIGARRLhTvl 400 (444)
T COG1220 378 AEIAYQVNEKT---------ENIGARRLHTVL 400 (444)
T ss_pred HHHHHHhcccc---------cchhHHHHHHHH
Confidence 88776543332 356778777654
No 181
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=91.80 E-value=3.1 Score=36.71 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=29.5
Q ss_pred cccCHHHHHHHHHHHHHHhcc-CCCCCCcHHHHHHHHh
Q psy7187 176 IPITVRQLEAIVRIAESMAKM-QLEPFAIDSHVTEALR 212 (214)
Q Consensus 176 ~~~s~R~l~~lirlA~a~A~l-~~r~~V~~~Dv~~Ai~ 212 (214)
..++.|-..++-|+.-+.-|| .=.-.++.+|+++.++
T Consensus 394 ~~~~~RD~~aV~kt~SgllKLL~P~~~~~~ee~~~~l~ 431 (449)
T TIGR02688 394 PNLNTRDVIAVKKTFSGLMKILFPHGTITKEEFTECLE 431 (449)
T ss_pred CCcchhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 357889999999999999998 4445688999887764
No 182
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=91.80 E-value=0.18 Score=39.72 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=47.9
Q ss_pred ccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEe--cceEEEEeCceEEEEeecCC
Q psy7187 8 LADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAK--AGITTTLNSRCSVLAAANSV 63 (214)
Q Consensus 8 la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~--~g~~~~lpa~~~viaa~Np~ 63 (214)
+...-++++||++.+.....+.|...+-..++++-+ +.....+|-.++++||+|..
T Consensus 93 l~~~~iveldEl~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~ 150 (198)
T PF05272_consen 93 LQGKWIVELDELDGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDD 150 (198)
T ss_pred HHHhHheeHHHHhhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCc
Confidence 344568999999999999999999999998888865 33578899999999999985
No 183
>PLN00035 histone H4; Provisional
Probab=91.53 E-value=1.9 Score=30.11 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=46.9
Q ss_pred CCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHH
Q psy7187 126 ELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDS 205 (214)
Q Consensus 126 ~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~ 205 (214)
.++...+++...-+- --.+|.++.+.+...... -++.+++=|-+.|+-..|.+|+.+
T Consensus 29 ~ipk~~IrRLARr~G---vkRIS~~ay~elr~vle~--------------------~l~~I~~dav~ya~HA~RKTV~~~ 85 (103)
T PLN00035 29 GITKPAIRRLARRGG---VKRISGLIYEETRGVLKI--------------------FLENVIRDAVTYTEHARRKTVTAM 85 (103)
T ss_pred cCCHHHHHHHHHHcC---cccchHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHhcCCCcCcHH
Confidence 367777777654332 135788777777665432 166788999999999999999999
Q ss_pred HHHHHHh
Q psy7187 206 HVTEALR 212 (214)
Q Consensus 206 Dv~~Ai~ 212 (214)
||..|+.
T Consensus 86 DV~~Alk 92 (103)
T PLN00035 86 DVVYALK 92 (103)
T ss_pred HHHHHHH
Confidence 9999975
No 184
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.30 E-value=3.2 Score=38.50 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=25.6
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
+...|++|||++.|+....++|+..||+
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEe 147 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEE 147 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhc
Confidence 5568999999999999999999999995
No 185
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.23 E-value=5.5 Score=34.35 Aligned_cols=80 Identities=25% Similarity=0.361 Sum_probs=49.0
Q ss_pred ceEeeccCCCC-----------CHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCC
Q psy7187 12 GVVCIDEFDKM-----------REDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMP 80 (214)
Q Consensus 12 Gv~~iDE~~~~-----------~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~ 80 (214)
.|+|||||+-+ +.+++-+|+|-+.|- .|... -.+.-||||+|-..- |.+
T Consensus 246 sIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ql------DGFD~--~~nvKVI~ATNR~D~------------LDP 305 (406)
T COG1222 246 SIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQL------DGFDP--RGNVKVIMATNRPDI------------LDP 305 (406)
T ss_pred eEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhc------cCCCC--CCCeEEEEecCCccc------------cCh
Confidence 58999999854 346888888888751 34322 235789999987521 444
Q ss_pred CCC--CcccEEEEecCCCCccccHHHHHHHHHHHHhhc
Q psy7187 81 TIL--SRFDMIFIIKDEHDETRDITLAKHIMKVHMTAG 116 (214)
Q Consensus 81 ~ll--dRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~ 116 (214)
+|| -|||=.+-+. .+|... ...|++-|....
T Consensus 306 ALLRPGR~DRkIEfp-lPd~~g----R~~Il~IHtrkM 338 (406)
T COG1222 306 ALLRPGRFDRKIEFP-LPDEEG----RAEILKIHTRKM 338 (406)
T ss_pred hhcCCCcccceeecC-CCCHHH----HHHHHHHHhhhc
Confidence 554 4676444443 344333 345778777653
No 186
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=90.86 E-value=2.6 Score=28.41 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=45.6
Q ss_pred CCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHH
Q psy7187 126 ELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDS 205 (214)
Q Consensus 126 ~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~ 205 (214)
.++...+++...-+- --.+|.++.+.+.+.... -++.+++-|-+.|.=.+|.+|+.+
T Consensus 13 gi~k~~I~RLarr~G---vkRIS~d~y~e~~~~l~~--------------------~l~~I~~dav~ya~Ha~RKTVt~~ 69 (85)
T cd00076 13 GITKPAIRRLARRGG---VKRISGGVYDEVRNVLKS--------------------YLEDVIRDAVTYTEHAKRKTVTAM 69 (85)
T ss_pred cCCHHHHHHHHHHcC---cchhhHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHhcCCCcCcHH
Confidence 366667776643221 124677766666554432 166789999999999999999999
Q ss_pred HHHHHHh
Q psy7187 206 HVTEALR 212 (214)
Q Consensus 206 Dv~~Ai~ 212 (214)
||..|+.
T Consensus 70 DV~~alk 76 (85)
T cd00076 70 DVVYALK 76 (85)
T ss_pred HHHHHHH
Confidence 9999874
No 187
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=90.82 E-value=2.2 Score=37.96 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=17.8
Q ss_pred CceEeeccCCCCC--HHHHHHHHHhhh
Q psy7187 11 GGVVCIDEFDKMR--EDDRVAIHEAME 35 (214)
Q Consensus 11 ~Gv~~iDE~~~~~--~~~~~~L~e~me 35 (214)
--+++|||+..+. +..++.|+..+.
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N 233 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFN 233 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHH
Confidence 4589999998876 445566666554
No 188
>KOG0730|consensus
Probab=90.75 E-value=5 Score=37.14 Aligned_cols=77 Identities=22% Similarity=0.276 Sum_probs=51.8
Q ss_pred ceEeeccCCCCC-----------HHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCC
Q psy7187 12 GVVCIDEFDKMR-----------EDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMP 80 (214)
Q Consensus 12 Gv~~iDE~~~~~-----------~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~ 80 (214)
-|+|+||++-+- +.+++.|+.-|+ |+... .+..|+||+|-..- |.+
T Consensus 529 ~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmD---------G~e~~--k~V~ViAATNRpd~------------ID~ 585 (693)
T KOG0730|consen 529 CIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMD---------GLEAL--KNVLVIAATNRPDM------------IDP 585 (693)
T ss_pred eEEehhhHHhHhhccCCCccchHHHHHHHHHHHcc---------ccccc--CcEEEEeccCChhh------------cCH
Confidence 689999998753 446778888775 32111 35889999997532 889
Q ss_pred CCCC--cccEEEEecCCCCccccHHHHHHHHHHHHhhc
Q psy7187 81 TILS--RFDMIFIIKDEHDETRDITLAKHIMKVHMTAG 116 (214)
Q Consensus 81 ~lld--RFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~ 116 (214)
+||. |||-++.+. .+|.+. ...|++.+.+..
T Consensus 586 ALlRPGRlD~iiyVp-lPD~~a----R~~Ilk~~~kkm 618 (693)
T KOG0730|consen 586 ALLRPGRLDRIIYVP-LPDLEA----RLEILKQCAKKM 618 (693)
T ss_pred HHcCCcccceeEeec-CccHHH----HHHHHHHHHhcC
Confidence 9998 999777764 334333 345777766543
No 189
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=90.64 E-value=2.3 Score=27.40 Aligned_cols=54 Identities=19% Similarity=0.153 Sum_probs=37.7
Q ss_pred HHhHhccCC--CCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHH
Q psy7187 137 NYCRMRCGP--RLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEAL 211 (214)
Q Consensus 137 ~~ar~~~~p--~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai 211 (214)
.+.++ +.| .+.+++.+.+...+-.. ++.++..|...||.+++++++..|+.-.+
T Consensus 7 ~Lv~~-iDp~~~ld~~vee~Ll~laddF--------------------v~~v~~~ac~lAKhR~s~tle~~Dv~~~L 62 (68)
T PF03847_consen 7 ELVKQ-IDPNEKLDPDVEELLLELADDF--------------------VDDVVSFACRLAKHRKSSTLEVKDVQLHL 62 (68)
T ss_dssp HHHHC-C-SS----HHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHTT-SEE-HHHHHHHH
T ss_pred HHHHH-cCCCCCCCHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 34444 455 67889999988877442 66889999999999999999999998665
No 190
>KOG0736|consensus
Probab=90.60 E-value=6.8 Score=37.14 Aligned_cols=102 Identities=20% Similarity=0.351 Sum_probs=60.7
Q ss_pred ceEeeccCCCCCH-------------HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccC
Q psy7187 12 GVVCIDEFDKMRE-------------DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDF 78 (214)
Q Consensus 12 Gv~~iDE~~~~~~-------------~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l 78 (214)
=|+|.||++-+.+ .+.+.|+--|+ |++..-....-||||+|-- .. |
T Consensus 766 CVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELD---------gls~~~s~~VFViGATNRP-DL-----------L 824 (953)
T KOG0736|consen 766 CVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELD---------GLSDSSSQDVFVIGATNRP-DL-----------L 824 (953)
T ss_pred eEEEeccccccCccCCCCCCccccHHHHHHHHHHHhh---------cccCCCCCceEEEecCCCc-cc-----------c
Confidence 4789999998765 35666766663 5544323357788999863 22 4
Q ss_pred CCCCC--CcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHH
Q psy7187 79 MPTIL--SRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHE 150 (214)
Q Consensus 79 ~~~ll--dRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~e 150 (214)
.++|| -|||=.+++..+.+.+.. .+|+++..+.. ..+..++...+-+ . |.|.+|-.
T Consensus 825 DpALLRPGRFDKLvyvG~~~d~esk----~~vL~AlTrkF-----kLdedVdL~eiAk------~-cp~~~TGA 882 (953)
T KOG0736|consen 825 DPALLRPGRFDKLVYVGPNEDAESK----LRVLEALTRKF-----KLDEDVDLVEIAK------K-CPPNMTGA 882 (953)
T ss_pred ChhhcCCCccceeEEecCCccHHHH----HHHHHHHHHHc-----cCCCCcCHHHHHh------h-CCcCCchh
Confidence 45554 599988887765554443 34555544432 2334445444333 3 67888864
No 191
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=90.43 E-value=3.2 Score=26.42 Aligned_cols=63 Identities=24% Similarity=0.242 Sum_probs=44.9
Q ss_pred CChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHH
Q psy7187 127 LPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSH 206 (214)
Q Consensus 127 l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~D 206 (214)
++.+.++....-+- -..+++++...+...... | +..+++-|-..++=..|++++.+|
T Consensus 3 ~p~~~i~ria~~~G---i~ris~~a~~~l~~~~e~-------------------r-l~~i~~~A~k~~~hakRktlt~~D 59 (65)
T smart00803 3 LPKETIKDVAESLG---IGNLSDEAAKLLAEDVEY-------------------R-IKEIVQEALKFMRHSKRTTLTTSD 59 (65)
T ss_pred CCHHHHHHHHHHCC---CccccHHHHHHHHHHHHH-------------------H-HHHHHHHHHHHHHHhCCCeecHHH
Confidence 45566666543321 235888888887665432 1 446888888899999999999999
Q ss_pred HHHHHh
Q psy7187 207 VTEALR 212 (214)
Q Consensus 207 v~~Ai~ 212 (214)
|..|++
T Consensus 60 I~~Alk 65 (65)
T smart00803 60 IDSALR 65 (65)
T ss_pred HHHHhC
Confidence 999864
No 192
>KOG0745|consensus
Probab=90.26 E-value=0.21 Score=43.73 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=42.7
Q ss_pred eeeccCCceEeeccCCCCC--------------HHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC
Q psy7187 5 AMVLADGGVVCIDEFDKMR--------------EDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV 63 (214)
Q Consensus 5 ~l~la~~Gv~~iDE~~~~~--------------~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~ 63 (214)
-+-.|..||+||||++++. ..++++|+..+|--.|.|-.-|.....+-+...|-|.|-.
T Consensus 286 nVekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnIL 358 (564)
T KOG0745|consen 286 NVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNIL 358 (564)
T ss_pred CHHHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceE
Confidence 3557889999999999987 3588999999987777885555444445555556666653
No 193
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.87 E-value=6.9 Score=36.30 Aligned_cols=29 Identities=21% Similarity=0.158 Sum_probs=26.1
Q ss_pred ccCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 8 LADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 8 la~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
.+...|++|||.+.|+....++|+..||+
T Consensus 125 ~~~~KVvIIdEad~Lt~~a~naLLK~LEe 153 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAAFNAFLKTLEE 153 (620)
T ss_pred cCCCEEEEEeChhhcCHHHHHHHHHHHhC
Confidence 35678999999999999999999999997
No 194
>KOG1808|consensus
Probab=89.83 E-value=0.22 Score=50.66 Aligned_cols=81 Identities=16% Similarity=0.208 Sum_probs=62.6
Q ss_pred ceeecc--CCceEeeccCCCCCHHHHHHHHHhhhc-CeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCC
Q psy7187 4 GAMVLA--DGGVVCIDEFDKMREDDRVAIHEAMEQ-QTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMP 80 (214)
Q Consensus 4 G~l~la--~~Gv~~iDE~~~~~~~~~~~L~e~me~-~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~ 80 (214)
|.+|-| +|-.+++||+|..+.+++.+|...++. +.+.+......+.-.-+|.+.|+.||..++ .+...++.
T Consensus 499 g~LV~Alr~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y------~grk~lsR 572 (1856)
T KOG1808|consen 499 GVLVQALRNGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTY------GGRKILSR 572 (1856)
T ss_pred hHHHHHHHhCCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCcccc------chhhhhhh
Confidence 444433 567799999999999999999999997 888887666656656689999999997332 23445899
Q ss_pred CCCCcccEEE
Q psy7187 81 TILSRFDMIF 90 (214)
Q Consensus 81 ~lldRFDL~~ 90 (214)
++++||.-+.
T Consensus 573 a~~~rf~e~~ 582 (1856)
T KOG1808|consen 573 ALRNRFIELH 582 (1856)
T ss_pred cccccchhhh
Confidence 9999996433
No 195
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=89.82 E-value=0.62 Score=34.04 Aligned_cols=29 Identities=14% Similarity=0.457 Sum_probs=26.2
Q ss_pred ccCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 8 LADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 8 la~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
.+.+|.++|+|++.++++.+..|.+.++.
T Consensus 67 ~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~ 95 (138)
T PF14532_consen 67 QAKGGTLYLKNIDRLSPEAQRRLLDLLKR 95 (138)
T ss_dssp HCTTSEEEEECGCCS-HHHHHHHHHHHHH
T ss_pred HcCCCEEEECChHHCCHHHHHHHHHHHHh
Confidence 46899999999999999999999999987
No 196
>PTZ00015 histone H4; Provisional
Probab=89.40 E-value=3.6 Score=28.73 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=45.5
Q ss_pred CCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHH
Q psy7187 126 ELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDS 205 (214)
Q Consensus 126 ~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~ 205 (214)
.++...+++...-+- --.+|.++.+.+...... -++.+++=|-+.|.-..|.+|+.+
T Consensus 30 gI~k~~IrRLarr~G---vkRIS~d~y~e~r~vle~--------------------~l~~I~rdav~~aeHA~RKTVt~~ 86 (102)
T PTZ00015 30 GITKGAIRRLARRGG---VKRISGDIYEEVRGVLKA--------------------FLENVVRDSTAYTEYARRKTVTAM 86 (102)
T ss_pred CCCHHHHHHHHHHcC---CccchHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHhcCCCcccHH
Confidence 466666776543221 125777776666554432 166889999999999999999999
Q ss_pred HHHHHHh
Q psy7187 206 HVTEALR 212 (214)
Q Consensus 206 Dv~~Ai~ 212 (214)
||..|+.
T Consensus 87 DV~~AlK 93 (102)
T PTZ00015 87 DVVYALK 93 (102)
T ss_pred HHHHHHH
Confidence 9999975
No 197
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=88.94 E-value=0.31 Score=36.96 Aligned_cols=57 Identities=28% Similarity=0.412 Sum_probs=39.7
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCc-eEEEEeecCCCCCCCCCcccccccCCCCCCCccc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSR-CSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFD 87 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~-~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFD 87 (214)
+..-|+.||+++.|.....++|+..||+- |.. ..++.|.||. ++.+++.||.
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEep-------------p~~~~fiL~t~~~~-------------~il~TI~SRc- 153 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEP-------------PENTYFILITNNPS-------------KILPTIRSRC- 153 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHST-------------TTTEEEEEEES-GG-------------GS-HHHHTTS-
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCC-------------CCCEEEEEEECChH-------------HChHHHHhhc-
Confidence 45679999999999999999999999973 222 3344445553 3788889998
Q ss_pred EEEEe
Q psy7187 88 MIFII 92 (214)
Q Consensus 88 L~~~~ 92 (214)
..+.+
T Consensus 154 ~~i~~ 158 (162)
T PF13177_consen 154 QVIRF 158 (162)
T ss_dssp EEEEE
T ss_pred eEEec
Confidence 55544
No 198
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=88.85 E-value=0.57 Score=42.20 Aligned_cols=67 Identities=21% Similarity=0.252 Sum_probs=42.5
Q ss_pred CceEeeccCCCCCH------------HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccC
Q psy7187 11 GGVVCIDEFDKMRE------------DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDF 78 (214)
Q Consensus 11 ~Gv~~iDE~~~~~~------------~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l 78 (214)
..|+|+||++.+-. ..+..|+..|+. ... ..+..||||+|.... |
T Consensus 290 p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDg---------l~~--~~~ViVI~ATN~~d~------------L 346 (512)
T TIGR03689 290 PVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDG---------VES--LDNVIVIGASNREDM------------I 346 (512)
T ss_pred CceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcc---------ccc--CCceEEEeccCChhh------------C
Confidence 35899999997621 123456665542 110 125788999998633 7
Q ss_pred CCCCCC--cccEEEEecCCCCcccc
Q psy7187 79 MPTILS--RFDMIFIIKDEHDETRD 101 (214)
Q Consensus 79 ~~~lld--RFDL~~~~~~~~~~~~d 101 (214)
.++|+. |||..+.+.. ++.+..
T Consensus 347 DpALlRpGRfD~~I~~~~-Pd~e~r 370 (512)
T TIGR03689 347 DPAILRPGRLDVKIRIER-PDAEAA 370 (512)
T ss_pred CHhhcCccccceEEEeCC-CCHHHH
Confidence 888886 9998877653 444333
No 199
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=88.79 E-value=4.3 Score=26.17 Aligned_cols=48 Identities=21% Similarity=0.204 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 146 RLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 146 ~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
.++.++..++...... .+..++..|...|.-..|.++++.|+..|+++
T Consensus 27 ris~~a~~~L~~~~E~--------------------~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~ 74 (75)
T PF00125_consen 27 RISSEALVALQSVLEY--------------------LLVEILEEAGNLARHAKRKTITPRDIQLAVRI 74 (75)
T ss_dssp EECHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHH
T ss_pred ccccccchhhhhhhhh--------------------hhhhhhhHHHHHHhhcCCcEecHHHHHHHHhc
Confidence 6788888888766533 16688999999999999999999999999875
No 200
>KOG0989|consensus
Probab=88.26 E-value=2 Score=36.13 Aligned_cols=51 Identities=22% Similarity=0.380 Sum_probs=38.2
Q ss_pred ceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCccc
Q psy7187 12 GVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFD 87 (214)
Q Consensus 12 Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFD 87 (214)
.|+.+||.+.|+.+.+.+|+..||.-.- .++|.+|.. |-.+|+.|+.||.-
T Consensus 131 KiiIlDEcdsmtsdaq~aLrr~mE~~s~-----------~trFiLIcn--------------ylsrii~pi~SRC~ 181 (346)
T KOG0989|consen 131 KIIILDECDSMTSDAQAALRRTMEDFSR-----------TTRFILICN--------------YLSRIIRPLVSRCQ 181 (346)
T ss_pred eEEEEechhhhhHHHHHHHHHHHhcccc-----------ceEEEEEcC--------------ChhhCChHHHhhHH
Confidence 6889999999999999999999996211 124555542 23358899999874
No 201
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=88.23 E-value=5.4 Score=26.13 Aligned_cols=48 Identities=21% Similarity=0.119 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 145 PRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 145 p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
...++.+.+.+.+.+. +.+..|.+.+..+|...+|..++..||..|+.
T Consensus 22 ~~~~~sale~ltdi~~--------------------~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~ 69 (77)
T smart00576 22 DSFQESALETLTDILQ--------------------SYIQELGRTAHSYAELAGRTEPNLGDVVLALE 69 (77)
T ss_pred cccCHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 3467788888877653 34677889999999999999999999999864
No 202
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=88.04 E-value=6.9 Score=35.04 Aligned_cols=63 Identities=22% Similarity=0.293 Sum_probs=41.4
Q ss_pred CCceEeeccCCCCCH-----------HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccC
Q psy7187 10 DGGVVCIDEFDKMRE-----------DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDF 78 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~-----------~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l 78 (214)
.-.|+|+||++.+-+ .+...|+..|+...- . ....|+||+|.... +
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~----~-------~~v~vi~aTN~p~~------------l 391 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEK----A-------EGVLVIAATNRPDD------------L 391 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCc----c-------CceEEEecCCCccc------------c
Confidence 357999999998543 355566666642111 1 12668999998644 6
Q ss_pred CCCCCC--cccEEEEecCC
Q psy7187 79 MPTILS--RFDMIFIIKDE 95 (214)
Q Consensus 79 ~~~lld--RFDL~~~~~~~ 95 (214)
.++++- |||-.+.+..+
T Consensus 392 d~a~lR~gRfd~~i~v~~p 410 (494)
T COG0464 392 DPALLRPGRFDRLIYVPLP 410 (494)
T ss_pred CHhhcccCccceEeecCCC
Confidence 677777 99988877543
No 203
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=87.85 E-value=2.8 Score=37.12 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=15.1
Q ss_pred CceEeeccCCCCCH--HHHHHHHHhh
Q psy7187 11 GGVVCIDEFDKMRE--DDRVAIHEAM 34 (214)
Q Consensus 11 ~Gv~~iDE~~~~~~--~~~~~L~e~m 34 (214)
--+++|||+..+.. ..+..|...+
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~ 220 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTF 220 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHH
Confidence 45899999997632 2334454444
No 204
>PRK04195 replication factor C large subunit; Provisional
Probab=87.82 E-value=20 Score=32.16 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=21.5
Q ss_pred CCceEeeccCCCCCH----HHHHHHHHhhhc
Q psy7187 10 DGGVVCIDEFDKMRE----DDRVAIHEAMEQ 36 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~----~~~~~L~e~me~ 36 (214)
.+.|++|||++.+.. .....|+..|+.
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~ 128 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGARAILELIKK 128 (482)
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHHc
Confidence 567999999999876 456788888863
No 205
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=87.29 E-value=0.78 Score=35.34 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=25.4
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
+...|++|||++.|+++.++.|+..||+
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~ 122 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEE 122 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcC
Confidence 5667999999999999999999999986
No 206
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=86.85 E-value=1.3 Score=31.84 Aligned_cols=48 Identities=10% Similarity=-0.035 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 146 RLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 146 ~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
.+++.+...|.++. -|..+.+++=|...|+-.+|.+|+.+||+.|+..
T Consensus 18 ~~~~~v~~~Lle~~--------------------~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~ 65 (117)
T cd07979 18 EYEPRVINQLLEFA--------------------YRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQS 65 (117)
T ss_pred ccCHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 46777766665543 2446688999999999999999999999999863
No 207
>KOG2035|consensus
Probab=86.05 E-value=2.3 Score=35.36 Aligned_cols=61 Identities=30% Similarity=0.467 Sum_probs=45.8
Q ss_pred ceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccEEEE
Q psy7187 12 GVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDMIFI 91 (214)
Q Consensus 12 Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL~~~ 91 (214)
.|+.|-|.|++..+.+.+|+..||.- -..|-+|-.+|... ++-+|+-||. |.+-
T Consensus 129 Kvvvi~ead~LT~dAQ~aLRRTMEkY-------------s~~~RlIl~cns~S------------riIepIrSRC-l~iR 182 (351)
T KOG2035|consen 129 KVVVINEADELTRDAQHALRRTMEKY-------------SSNCRLILVCNSTS------------RIIEPIRSRC-LFIR 182 (351)
T ss_pred EEEEEechHhhhHHHHHHHHHHHHHH-------------hcCceEEEEecCcc------------cchhHHhhhe-eEEe
Confidence 57899999999999999999999952 22466666666632 3778999998 7776
Q ss_pred ecCCCCc
Q psy7187 92 IKDEHDE 98 (214)
Q Consensus 92 ~~~~~~~ 98 (214)
+.-++++
T Consensus 183 vpaps~e 189 (351)
T KOG2035|consen 183 VPAPSDE 189 (351)
T ss_pred CCCCCHH
Confidence 6655443
No 208
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.83 E-value=0.44 Score=40.28 Aligned_cols=62 Identities=21% Similarity=0.338 Sum_probs=43.7
Q ss_pred eeccCCceEeeccCCCCCH--------------HHHHHHHHhhhcCeEEEE-ecceEEEEeCceEEEEeecCC---CCCC
Q psy7187 6 MVLADGGVVCIDEFDKMRE--------------DDRVAIHEAMEQQTISIA-KAGITTTLNSRCSVLAAANSV---FGRW 67 (214)
Q Consensus 6 l~la~~Gv~~iDE~~~~~~--------------~~~~~L~e~me~~~i~i~-~~g~~~~lpa~~~viaa~Np~---~g~~ 67 (214)
+..|.+||++||||+++.. .++++|+..||--..+|. ++|.... .-+|.-+-|+|-. .|-|
T Consensus 158 V~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP-~Qe~iqvDT~NILFIcgGAF 236 (408)
T COG1219 158 VERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHP-QQEFIQVDTSNILFICGGAF 236 (408)
T ss_pred HHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCC-ccceEEEcccceeEEecccc
Confidence 4578999999999999765 378999999986666775 3443322 2257777777774 3455
Q ss_pred C
Q psy7187 68 D 68 (214)
Q Consensus 68 ~ 68 (214)
+
T Consensus 237 ~ 237 (408)
T COG1219 237 A 237 (408)
T ss_pred c
Confidence 4
No 209
>KOG0738|consensus
Probab=85.52 E-value=3 Score=36.37 Aligned_cols=71 Identities=24% Similarity=0.316 Sum_probs=44.2
Q ss_pred ceEeeccCCCC------------CHHHHHHHHHhhhcCeEEEEecceEEEE--eCceEEEEeecCCCCCCCCCccccccc
Q psy7187 12 GVVCIDEFDKM------------REDDRVAIHEAMEQQTISIAKAGITTTL--NSRCSVLAAANSVFGRWDDTKGEQNID 77 (214)
Q Consensus 12 Gv~~iDE~~~~------------~~~~~~~L~e~me~~~i~i~~~g~~~~l--pa~~~viaa~Np~~g~~~~~~~~~~~~ 77 (214)
.+.|||||+-+ ...+++-|+.-|+ |..-++ -....|+||+|--+.
T Consensus 306 StIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmD---------G~~~t~e~~k~VmVLAATN~PWd------------ 364 (491)
T KOG0738|consen 306 STIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMD---------GVQGTLENSKVVMVLAATNFPWD------------ 364 (491)
T ss_pred ceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhh---------ccccccccceeEEEEeccCCCcc------------
Confidence 46899999854 3356777877775 322222 224789999998654
Q ss_pred CCCCCCCcccEEEEecCCCCccccHHH
Q psy7187 78 FMPTILSRFDMIFIIKDEHDETRDITL 104 (214)
Q Consensus 78 l~~~lldRFDL~~~~~~~~~~~~d~~i 104 (214)
|..+|+-||.=.+++. -++.+....+
T Consensus 365 iDEAlrRRlEKRIyIP-LP~~~~R~~L 390 (491)
T KOG0738|consen 365 IDEALRRRLEKRIYIP-LPDAEARSAL 390 (491)
T ss_pred hHHHHHHHHhhheeee-CCCHHHHHHH
Confidence 7788888887333332 2344444443
No 210
>PRK05642 DNA replication initiation factor; Validated
Probab=84.90 E-value=17 Score=29.16 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 146 RLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 146 ~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
.+++++.++|.+.+ .=+.|.++.++..=. .+.+.....||..=+++++.
T Consensus 185 ~l~~ev~~~L~~~~-----------------~~d~r~l~~~l~~l~-~~~l~~~~~it~~~~~~~L~ 233 (234)
T PRK05642 185 HLTDEVGHFILTRG-----------------TRSMSALFDLLERLD-QASLQAQRKLTIPFLKETLG 233 (234)
T ss_pred CCCHHHHHHHHHhc-----------------CCCHHHHHHHHHHHH-HHHHHcCCcCCHHHHHHHhc
Confidence 57889988886643 125666655554333 24444435688888887764
No 211
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=83.82 E-value=1.6 Score=30.59 Aligned_cols=65 Identities=15% Similarity=0.200 Sum_probs=38.2
Q ss_pred ceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccEEEE
Q psy7187 12 GVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDMIFI 91 (214)
Q Consensus 12 Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL~~~ 91 (214)
+++++||+..+.......+...... ..............+++++|+. .. ..+..+..|+|..+.
T Consensus 80 ~viiiDei~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~-~~----------~~~~~~~~~~~~~~~ 143 (148)
T smart00382 80 DVLILDEITSLLDAEQEALLLLLEE-----LRLLLLLKSEKNLTVILTTNDE-KD----------LGPALLRRRFDRRIV 143 (148)
T ss_pred CEEEEECCcccCCHHHHHHHHhhhh-----hHHHHHHHhcCCCEEEEEeCCC-cc----------CchhhhhhccceEEE
Confidence 8999999999988766654433211 0011112224568999999961 11 144555557776655
Q ss_pred e
Q psy7187 92 I 92 (214)
Q Consensus 92 ~ 92 (214)
+
T Consensus 144 ~ 144 (148)
T smart00382 144 L 144 (148)
T ss_pred e
Confidence 4
No 212
>smart00417 H4 Histone H4.
Probab=82.52 E-value=6.7 Score=25.69 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=42.1
Q ss_pred CCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHH
Q psy7187 126 ELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDS 205 (214)
Q Consensus 126 ~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~ 205 (214)
-++...+++...-+- --.+|..+.+.+.+.... -++.+++-|-+.|.-.+|.+|+.+
T Consensus 13 gI~k~~IrRLaRr~G---vkRIS~~~y~elr~vle~--------------------~l~~I~rdav~~a~ha~RKTV~~~ 69 (74)
T smart00417 13 GITKPAIRRLARRGG---VKRISGLIYDETRNVLKS--------------------FLENVVRDAVTYTEHARRKTVTAM 69 (74)
T ss_pred CCCHHHHHHHHHHcC---cchhhHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHhcCCCcccHH
Confidence 356666666543221 124677666666555432 166789999999999999999999
Q ss_pred HHHH
Q psy7187 206 HVTE 209 (214)
Q Consensus 206 Dv~~ 209 (214)
||.-
T Consensus 70 DV~~ 73 (74)
T smart00417 70 DVVY 73 (74)
T ss_pred Hhee
Confidence 9864
No 213
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=82.42 E-value=1.9 Score=36.61 Aligned_cols=55 Identities=24% Similarity=0.359 Sum_probs=41.7
Q ss_pred ccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCc-eEEEEeecCCCCCCCCCcccccccCCCCCCCcc
Q psy7187 8 LADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSR-CSVLAAANSVFGRWDDTKGEQNIDFMPTILSRF 86 (214)
Q Consensus 8 la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~-~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRF 86 (214)
.+..-|++||+.++|+....++|+..||+-. .. +.|+.|.||. .|.+.+.||.
T Consensus 104 ~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp-------------~~~~fiL~t~~~~-------------~ll~TI~SRc 157 (328)
T PRK05707 104 LGGRKVVLIEPAEAMNRNAANALLKSLEEPS-------------GDTVLLLISHQPS-------------RLLPTIKSRC 157 (328)
T ss_pred cCCCeEEEECChhhCCHHHHHHHHHHHhCCC-------------CCeEEEEEECChh-------------hCcHHHHhhc
Confidence 3567899999999999999999999999721 11 3445565663 2778999998
Q ss_pred cE
Q psy7187 87 DM 88 (214)
Q Consensus 87 DL 88 (214)
-.
T Consensus 158 ~~ 159 (328)
T PRK05707 158 QQ 159 (328)
T ss_pred ee
Confidence 44
No 214
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=82.07 E-value=12 Score=25.52 Aligned_cols=68 Identities=21% Similarity=0.188 Sum_probs=47.9
Q ss_pred CCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCC
Q psy7187 123 SDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFA 202 (214)
Q Consensus 123 ~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V 202 (214)
....++...+++.+.-+-. ..++.+|.+.+.+...+ -++.|.+-|-..|+=.+|.+|
T Consensus 16 ~~~~Lp~apv~Ri~r~~~~---~Rvs~~A~~~l~~~~e~--------------------~~~~i~~~A~~~A~ha~RKTV 72 (91)
T COG2036 16 TDLLLPKAPVRRILRKAGA---ERVSSSAIEELQEALEE--------------------YLEEIAEDAVELAEHAKRKTV 72 (91)
T ss_pred hhhhcCchHHHHHHHHHhH---HHhhHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHcCCCee
Confidence 3445666666665533322 25788887777665432 256788889999999999999
Q ss_pred cHHHHHHHHhc
Q psy7187 203 IDSHVTEALRL 213 (214)
Q Consensus 203 ~~~Dv~~Ai~l 213 (214)
+.+||..|+..
T Consensus 73 ~~~DI~la~~~ 83 (91)
T COG2036 73 KAEDIKLALKR 83 (91)
T ss_pred cHHHHHHHHHH
Confidence 99999998753
No 215
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=81.62 E-value=2.2 Score=37.09 Aligned_cols=67 Identities=10% Similarity=0.241 Sum_probs=39.3
Q ss_pred ceEeeccCCCCCHH-----------H-HHHHHHhhhcC-eEEEEecce--EEEEeCceEEEEeecCCCCCCCCCcccccc
Q psy7187 12 GVVCIDEFDKMRED-----------D-RVAIHEAMEQQ-TISIAKAGI--TTTLNSRCSVLAAANSVFGRWDDTKGEQNI 76 (214)
Q Consensus 12 Gv~~iDE~~~~~~~-----------~-~~~L~e~me~~-~i~i~~~g~--~~~lpa~~~viaa~Np~~g~~~~~~~~~~~ 76 (214)
-|+|||||+.+-.. . ...|+..|+.- .+++ .|. ...-..+..||||+|--.-
T Consensus 214 cVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l--~G~w~~~~~~~~V~VIaTTNrpd~----------- 280 (413)
T PLN00020 214 SCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSL--GGDWREKEEIPRVPIIVTGNDFST----------- 280 (413)
T ss_pred eEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccc--cccccccccCCCceEEEeCCCccc-----------
Confidence 48999999964321 1 13566666531 1222 221 1122345777888876432
Q ss_pred cCCCCCCC--cccEEEEe
Q psy7187 77 DFMPTILS--RFDMIFII 92 (214)
Q Consensus 77 ~l~~~lld--RFDL~~~~ 92 (214)
|.++|+- |||-.+.+
T Consensus 281 -LDpALlRpGRfDk~i~l 297 (413)
T PLN00020 281 -LYAPLIRDGRMEKFYWA 297 (413)
T ss_pred -CCHhHcCCCCCCceeCC
Confidence 7889988 99987753
No 216
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=81.37 E-value=14 Score=34.44 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=29.6
Q ss_pred cccCHHHHHHHHHHHHHHhcc-CCCCCCcHHHHHHHHh
Q psy7187 176 IPITVRQLEAIVRIAESMAKM-QLEPFAIDSHVTEALR 212 (214)
Q Consensus 176 ~~~s~R~l~~lirlA~a~A~l-~~r~~V~~~Dv~~Ai~ 212 (214)
..++.|-..++.|+.-..-|| .=.-.++.+|++++++
T Consensus 401 ~~~~~RD~~aV~kt~SgllKLl~P~~~~~~ee~e~~l~ 438 (675)
T TIGR02653 401 NNLNQRDVIAVRKTVSGLLKLLYPDGEYTKDDVRECLT 438 (675)
T ss_pred CCCchhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 357889999999999999988 4456788999887764
No 217
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=80.21 E-value=3 Score=35.77 Aligned_cols=56 Identities=32% Similarity=0.399 Sum_probs=40.0
Q ss_pred CceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCc-eEEEEeecCCCCCCCCCcccccccCCCCCCCcccEE
Q psy7187 11 GGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSR-CSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDMI 89 (214)
Q Consensus 11 ~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~-~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL~ 89 (214)
.-|++|||++.|+....++|+..||+-. .+ ..|+.+.+|. . +.+.+.||+ ..
T Consensus 142 ~rVviIDeAd~l~~~aanaLLk~LEEpp-------------~~~~fiLit~~~~--~-----------llptIrSRc-~~ 194 (351)
T PRK09112 142 WRIVIIDPADDMNRNAANAILKTLEEPP-------------ARALFILISHSSG--R-----------LLPTIRSRC-QP 194 (351)
T ss_pred ceEEEEEchhhcCHHHHHHHHHHHhcCC-------------CCceEEEEECChh--h-----------ccHHHHhhc-cE
Confidence 3599999999999999999999998632 22 2333345552 2 668899998 45
Q ss_pred EEec
Q psy7187 90 FIIK 93 (214)
Q Consensus 90 ~~~~ 93 (214)
+.+.
T Consensus 195 i~l~ 198 (351)
T PRK09112 195 ISLK 198 (351)
T ss_pred EEec
Confidence 5444
No 218
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=79.82 E-value=2.1 Score=36.27 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=26.6
Q ss_pred ccCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 8 LADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 8 la~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
.++..|++|||.+.|+.+..++|+..||+
T Consensus 108 ~~~~kvviI~~a~~~~~~a~NaLLK~LEE 136 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASAANSLLKFLEE 136 (329)
T ss_pred ccCceEEEeehHhhhCHHHHHHHHHHhcC
Confidence 45678999999999999999999999997
No 219
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=78.10 E-value=3 Score=24.46 Aligned_cols=32 Identities=25% Similarity=0.143 Sum_probs=24.1
Q ss_pred ccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHH
Q psy7187 177 PITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEA 210 (214)
Q Consensus 177 ~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~A 210 (214)
|+-+| ..+-+-++..|+-+|.+.||.+++.+|
T Consensus 13 P~fvR--~~~r~~~E~~Ar~~G~~~IT~e~v~~A 44 (45)
T PF08369_consen 13 PFFVR--KKLRDAAEKYARERGYDEITVEVVDAA 44 (45)
T ss_dssp -HHHH--HHHHHHHHHHHHHCT-SEE-HHHHHHH
T ss_pred CHHHH--HHHHHHHHHHHHHcCCCeECHHHHHhh
Confidence 44445 566688999999999999999999887
No 220
>COG2766 PrkA Putative Ser protein kinase [Signal transduction mechanisms]
Probab=77.31 E-value=0.61 Score=42.13 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=58.6
Q ss_pred cceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC-CCCCCCCcccccccCCCC
Q psy7187 3 GGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV-FGRWDDTKGEQNIDFMPT 81 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~-~g~~~~~~~~~~~~l~~~ 81 (214)
.|+|..|++|++=+=|.-+.+.+.+..|+.+-++|++.-.++ .--+|..-.|+|.+|-. +..|..++ =..+
T Consensus 249 ~Gal~~aNrGl~ef~Em~K~~~k~L~~lLtaTQEg~~k~~~~--~~~i~~d~lIvahsNesE~q~fk~n~------~nEA 320 (649)
T COG2766 249 SGALCRANRGLMEFVEMFKAPIKVLHPLLTATQEGNYKGTEG--IGAIPFDGLIVAHSNESEWQTFKNNK------NNEA 320 (649)
T ss_pred cchhhcccchHHHHHHHHhCcHHHHHHHhcccccCccCCCCC--cCccccCceEEeecCcHHHHHhhcCC------chHH
Confidence 599999999999999999999999999999999999886442 33467788999999876 33332221 1256
Q ss_pred CCCcc
Q psy7187 82 ILSRF 86 (214)
Q Consensus 82 lldRF 86 (214)
|+||.
T Consensus 321 f~dRi 325 (649)
T COG2766 321 FLDRI 325 (649)
T ss_pred HHhhe
Confidence 67776
No 221
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=76.08 E-value=4.2 Score=34.31 Aligned_cols=58 Identities=29% Similarity=0.408 Sum_probs=41.6
Q ss_pred ccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCccc
Q psy7187 8 LADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFD 87 (214)
Q Consensus 8 la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFD 87 (214)
.+...|++||+.++|+....++|+..||+-. ++.| |+.|.+|. .|.+.+.||.
T Consensus 122 ~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp------------~~~f-ILi~~~~~-------------~Ll~TI~SRc- 174 (314)
T PRK07399 122 EAPRKVVVIEDAETMNEAAANALLKTLEEPG------------NGTL-ILIAPSPE-------------SLLPTIVSRC- 174 (314)
T ss_pred cCCceEEEEEchhhcCHHHHHHHHHHHhCCC------------CCeE-EEEECChH-------------hCcHHHHhhc-
Confidence 3567899999999999999999999999711 1213 33444662 2778899998
Q ss_pred EEEEe
Q psy7187 88 MIFII 92 (214)
Q Consensus 88 L~~~~ 92 (214)
..+.+
T Consensus 175 q~i~f 179 (314)
T PRK07399 175 QIIPF 179 (314)
T ss_pred eEEec
Confidence 34443
No 222
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=75.88 E-value=6.6 Score=40.36 Aligned_cols=143 Identities=17% Similarity=0.156 Sum_probs=74.4
Q ss_pred CceEeeccCCCCC-------HHHHHHHHHhhhcCeE--EEEecceEEEEeCceEEEEeecCC--CCCCCCCcccccccCC
Q psy7187 11 GGVVCIDEFDKMR-------EDDRVAIHEAMEQQTI--SIAKAGITTTLNSRCSVLAAANSV--FGRWDDTKGEQNIDFM 79 (214)
Q Consensus 11 ~Gv~~iDE~~~~~-------~~~~~~L~e~me~~~i--~i~~~g~~~~lpa~~~viaa~Np~--~g~~~~~~~~~~~~l~ 79 (214)
.+|+|.|||| +| +++.-.|+.-||.|-+ ++.+...+ =++..|.||+||. .|+. +.+
T Consensus 1564 ~lVLFcDeIn-Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvT---I~~i~l~Gacnp~td~gRv---------~~~ 1630 (3164)
T COG5245 1564 DLVLFCDEIN-LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVT---ICGIILYGACNPGTDEGRV---------KYY 1630 (3164)
T ss_pred heEEEeeccC-CccccccCCCceEEeeHHHHHhcccccchhhhHhh---hcceEEEccCCCCCCcccC---------ccH
Confidence 5899999999 54 4556677788886332 34333332 2468899999996 4542 345
Q ss_pred CCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHH
Q psy7187 80 PTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRY 159 (214)
Q Consensus 80 ~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y 159 (214)
..++-|=-++|+. .+...+-..|-+-++.... +-.+.++. ++++...--.++|
T Consensus 1631 eRf~r~~v~vf~~--ype~~SL~~Iyea~l~~s~-------------l~~~ef~~------------~se~~~~aSv~ly 1683 (3164)
T COG5245 1631 ERFIRKPVFVFCC--YPELASLRNIYEAVLMGSY-------------LCFDEFNR------------LSEETMSASVELY 1683 (3164)
T ss_pred HHHhcCceEEEec--CcchhhHHHHHHHHHHHHH-------------HhhHHHHH------------HHHHHHHHHHHHH
Confidence 5555554344443 3332222222222221110 01111222 3444455555666
Q ss_pred HHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhc
Q psy7187 160 VLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAK 195 (214)
Q Consensus 160 ~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~ 195 (214)
...|...+.. -...+..+||-|..++|.-...|-
T Consensus 1684 ~~~k~~~k~~--lq~~y~y~pReLtR~lr~i~~yae 1717 (3164)
T COG5245 1684 LSSKDKTKFF--LQMNYGYKPRELTRSLRAIFGYAE 1717 (3164)
T ss_pred HHHHHhhhhh--cccccccChHHHHHHHHHHHhHHh
Confidence 6655444321 111256788888887776665544
No 223
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=74.89 E-value=5.6 Score=34.06 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=43.9
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccE
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDM 88 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL 88 (214)
+..-|++||+.++|+...-++|+..||+-- +....|+.|.||. .|.+.++||. .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp------------~~t~fiL~t~~~~-------------~LLpTI~SRc-q 184 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPP------------PGTVFLLVSARID-------------RLLPTILSRC-R 184 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCC------------cCcEEEEEECChh-------------hCcHHHHhcC-E
Confidence 455799999999999999999999999621 1124556666663 3778899998 4
Q ss_pred EEEecC
Q psy7187 89 IFIIKD 94 (214)
Q Consensus 89 ~~~~~~ 94 (214)
.+.+..
T Consensus 185 ~i~~~~ 190 (342)
T PRK06964 185 QFPMTV 190 (342)
T ss_pred EEEecC
Confidence 555543
No 224
>PRK14700 recombination factor protein RarA; Provisional
Probab=73.96 E-value=21 Score=29.93 Aligned_cols=15 Identities=27% Similarity=0.543 Sum_probs=11.2
Q ss_pred CCCCCCCcccEEEEec
Q psy7187 78 FMPTILSRFDMIFIIK 93 (214)
Q Consensus 78 l~~~lldRFDL~~~~~ 93 (214)
+.++|+||. .+|.+.
T Consensus 23 vn~ALlSR~-~v~~l~ 37 (300)
T PRK14700 23 LNDALVSRL-FILRLK 37 (300)
T ss_pred ecHhhhhhh-heeeec
Confidence 889999999 445443
No 225
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=73.01 E-value=23 Score=23.01 Aligned_cols=46 Identities=22% Similarity=0.135 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 147 LTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 147 ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
.++.+.+.|...+. +-+..|-+.++..|...+|..++..||..|+.
T Consensus 24 ~~~~al~~Ltdi~~--------------------~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~ 69 (77)
T PF07524_consen 24 ASPSALDTLTDILQ--------------------RYLQELGRTAKRYAEHAGRTEPNLQDVEQALE 69 (77)
T ss_pred cCHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 56677777766553 34667888899999999999999999998864
No 226
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=72.77 E-value=12 Score=31.33 Aligned_cols=55 Identities=25% Similarity=0.245 Sum_probs=40.6
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccE
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDM 88 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL 88 (214)
+...|++||+.++|+.+..++|+..||+-. +.-..++.|.||. .|.+.++||.-.
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp------------~~~~fiL~~~~~~-------------~ll~TI~SRcq~ 148 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPP------------QHGVIILTSAKPQ-------------RLPPTIRSRSLS 148 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCC------------CCeEEEEEeCChh-------------hCcHHHHhcceE
Confidence 456799999999999999999999999722 1113455555653 377888888843
No 227
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=72.29 E-value=6.6 Score=37.15 Aligned_cols=61 Identities=23% Similarity=0.336 Sum_probs=39.1
Q ss_pred CceEeeccCCCCC-----------HHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCC
Q psy7187 11 GGVVCIDEFDKMR-----------EDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFM 79 (214)
Q Consensus 11 ~Gv~~iDE~~~~~-----------~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~ 79 (214)
..|+||||++.+. ...+..|++.|+.-. . .....|+||+|+... +.
T Consensus 272 p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~----~-------~~~vivI~atn~~~~------------ld 328 (733)
T TIGR01243 272 PSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLK----G-------RGRVIVIGATNRPDA------------LD 328 (733)
T ss_pred CcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccc----c-------CCCEEEEeecCChhh------------cC
Confidence 3699999998763 335667777775321 0 124688889988532 45
Q ss_pred CCCCC--cccEEEEecC
Q psy7187 80 PTILS--RFDMIFIIKD 94 (214)
Q Consensus 80 ~~lld--RFDL~~~~~~ 94 (214)
+++.. |||..+.+.-
T Consensus 329 ~al~r~gRfd~~i~i~~ 345 (733)
T TIGR01243 329 PALRRPGRFDREIVIRV 345 (733)
T ss_pred HHHhCchhccEEEEeCC
Confidence 55543 8987776543
No 228
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=71.87 E-value=5.9 Score=33.68 Aligned_cols=59 Identities=25% Similarity=0.378 Sum_probs=42.5
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccE
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDM 88 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL 88 (214)
+...|++||+.++|+....++|+..||+-. +--..++.|.||. .|.+.++||. .
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp------------~~~~fiL~t~~~~-------------~llpTI~SRC-~ 159 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPR------------PNTYFLLQADLSA-------------ALLPTIYSRC-Q 159 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCC------------CCeEEEEEECChH-------------hCchHHHhhc-e
Confidence 456799999999999999999999999732 1114455566663 3778899998 4
Q ss_pred EEEec
Q psy7187 89 IFIIK 93 (214)
Q Consensus 89 ~~~~~ 93 (214)
.+.+.
T Consensus 160 ~~~~~ 164 (325)
T PRK06871 160 TWLIH 164 (325)
T ss_pred EEeCC
Confidence 44443
No 229
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=71.59 E-value=5.9 Score=33.56 Aligned_cols=57 Identities=21% Similarity=0.192 Sum_probs=41.1
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCce-EEEEeecCCCCCCCCCcccccccCCCCCCCccc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRC-SVLAAANSVFGRWDDTKGEQNIDFMPTILSRFD 87 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~-~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFD 87 (214)
+...|++||+.+.|+....++|+..||+- |..+ .|+.|.+|. +|.+.|.||.-
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~~~fiL~~~~~~-------------~lLpTIrSRCq 165 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEP-------------SPGRYLWLISAQPA-------------RLPATIRSRCQ 165 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCC-------------CCCCeEEEEECChh-------------hCchHHHhhhe
Confidence 34579999999999999999999999972 2233 334444453 37789999984
Q ss_pred EEEEe
Q psy7187 88 MIFII 92 (214)
Q Consensus 88 L~~~~ 92 (214)
.+.+
T Consensus 166 -~i~~ 169 (319)
T PRK08769 166 -RLEF 169 (319)
T ss_pred -EeeC
Confidence 3444
No 230
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=68.35 E-value=58 Score=25.79 Aligned_cols=52 Identities=17% Similarity=0.249 Sum_probs=38.2
Q ss_pred CCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcc
Q psy7187 10 DGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRF 86 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRF 86 (214)
..|.++|++.+.|.....++|+..+|+---. -..++.|.+|. .+.+.+.||.
T Consensus 54 ~~~k~iI~~a~~l~~~A~NaLLK~LEEPp~~------------~~fiL~t~~~~-------------~llpTI~SRc 105 (206)
T PRK08485 54 SEEKIIVIAAPSYGIEAQNALLKILEEPPKN------------ICFIIVAKSKN-------------LLLPTIRSRL 105 (206)
T ss_pred CCcEEEEEchHhhCHHHHHHHHHHhcCCCCC------------eEEEEEeCChH-------------hCchHHHhhh
Confidence 3566789999999999999999999972211 14556666663 2677788887
No 231
>smart00427 H2B Histone H2B.
Probab=68.22 E-value=35 Score=23.20 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 183 LEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 183 l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
.+.|.--|-.+|+...+.+++..++..|++|
T Consensus 36 ferIa~EAs~L~~~nkr~TltsreIqtAvrl 66 (89)
T smart00427 36 FERIAAEASKLARYNKKSTLSSREIQTAVRL 66 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCCHHHHHHHHHH
Confidence 5666777777888888889999999999876
No 232
>PLN00158 histone H2B; Provisional
Probab=67.31 E-value=43 Score=23.91 Aligned_cols=65 Identities=20% Similarity=0.309 Sum_probs=44.3
Q ss_pred HHHHHHHHHhHhccCC--CCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHH
Q psy7187 130 PVLKKYINYCRMRCGP--RLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHV 207 (214)
Q Consensus 130 ~~l~~~i~~ar~~~~p--~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv 207 (214)
+-...||.-+-.+++| .++..++..+.. |+. -..|.|.--|--+|+...+.+++..++
T Consensus 27 esy~~YI~kVLKQVhPd~gIS~kaM~ImnS-fvn-------------------DiferIA~EAs~La~~nkr~TltsrEI 86 (116)
T PLN00158 27 ETYKIYIYKVLKQVHPDTGISSKAMSIMNS-FIN-------------------DIFEKIATEAGKLARYNKKPTVTSREI 86 (116)
T ss_pred ccHHHHHHHHHHHhCCCCCccHHHHHHHHH-HHH-------------------HHHHHHHHHHHHHHhccCCCcCCHHHH
Confidence 4555666555444677 446676655533 322 126677777788888899999999999
Q ss_pred HHHHhcC
Q psy7187 208 TEALRLF 214 (214)
Q Consensus 208 ~~Ai~lf 214 (214)
..|++|.
T Consensus 87 qtAvrLv 93 (116)
T PLN00158 87 QTAVRLI 93 (116)
T ss_pred HHHHHHh
Confidence 9998874
No 233
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=66.88 E-value=6.8 Score=32.51 Aligned_cols=55 Identities=31% Similarity=0.360 Sum_probs=40.9
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccE
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDM 88 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL 88 (214)
+..-|++|||.+.|+.+..++|+-.||+. |.++.++-++| ... ++.+++.||.-.
T Consensus 108 ~~~kviiidead~mt~~A~nallk~lEep-------------~~~~~~il~~n-~~~-----------~il~tI~SRc~~ 162 (325)
T COG0470 108 GGYKVVIIDEADKLTEDAANALLKTLEEP-------------PKNTRFILITN-DPS-----------KILPTIRSRCQR 162 (325)
T ss_pred CCceEEEeCcHHHHhHHHHHHHHHHhccC-------------CCCeEEEEEcC-Chh-----------hccchhhhccee
Confidence 45679999999999999999999999963 34455666666 112 266688888843
No 234
>KOG1808|consensus
Probab=66.55 E-value=5.7 Score=41.10 Aligned_cols=82 Identities=17% Similarity=0.262 Sum_probs=57.0
Q ss_pred cceeeccCC--ceEeeccCCCCCHHHHHHHHHhhhc-CeEEEEe-c---ceEEEEeCceEEEEeecCCCCCCCCCccccc
Q psy7187 3 GGAMVLADG--GVVCIDEFDKMREDDRVAIHEAMEQ-QTISIAK-A---GITTTLNSRCSVLAAANSVFGRWDDTKGEQN 75 (214)
Q Consensus 3 ~G~l~la~~--Gv~~iDE~~~~~~~~~~~L~e~me~-~~i~i~~-~---g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~ 75 (214)
-|.|+-|-+ +-..+|||..+.++++..+...|+. +++.... . +.+..-.-.|.++|||||-.++ -.
T Consensus 784 dglLi~a~~~G~~~l~Dei~la~dsvleRln~~Le~~rtL~~~e~~~a~~~~v~A~~~f~~~atmnpGgd~-------gk 856 (1856)
T KOG1808|consen 784 DGLLIGAQGVGKQFLVDEISLAEDSVLERLNEVLEPDRTLLLLENQTAEEETVIAEEGFQLVATMNPGGDY-------GK 856 (1856)
T ss_pred CccchhhhhccchhhhhccccchhhHHHHHHHHhCcccccccccccccchhceeecccchhhhccCCcccc-------ce
Confidence 466665544 4578899999999999999999994 6666654 2 2334444569999999996433 12
Q ss_pred ccCCCCCCCcccEEEE
Q psy7187 76 IDFMPTILSRFDMIFI 91 (214)
Q Consensus 76 ~~l~~~lldRFDL~~~ 91 (214)
..+|+++..||--+++
T Consensus 857 kEls~AlrNrfte~~~ 872 (1856)
T KOG1808|consen 857 KELSPALRNRFTEVIL 872 (1856)
T ss_pred eecChhhhhceeEEEE
Confidence 3478888888854333
No 235
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=66.37 E-value=13 Score=29.55 Aligned_cols=27 Identities=7% Similarity=0.246 Sum_probs=19.3
Q ss_pred cCCceEeeccCCCCCHHH--HHHHHHhhh
Q psy7187 9 ADGGVVCIDEFDKMREDD--RVAIHEAME 35 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~--~~~L~e~me 35 (214)
.+--++|||+++.+..+. ++.|...++
T Consensus 96 ~~~DlL~iDDi~~l~~~~~~q~~lf~l~n 124 (219)
T PF00308_consen 96 RSADLLIIDDIQFLAGKQRTQEELFHLFN 124 (219)
T ss_dssp CTSSEEEEETGGGGTTHHHHHHHHHHHHH
T ss_pred hcCCEEEEecchhhcCchHHHHHHHHHHH
Confidence 345689999999987754 556665554
No 236
>KOG1142|consensus
Probab=66.25 E-value=9.1 Score=31.17 Aligned_cols=46 Identities=13% Similarity=0.053 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHH
Q psy7187 146 RLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEAL 211 (214)
Q Consensus 146 ~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai 211 (214)
.+.++++++|.++.-. -+++++..|.++||=+.++.|...||.-.+
T Consensus 172 ~LD~dVedlLleiADd--------------------FV~sii~~sC~LAKHRKsdtlEvrDIqLhL 217 (258)
T KOG1142|consen 172 KLDDDVEDLLLEIADD--------------------FVSSIIHRSCKLAKHRKSDTVEVRDIQLHL 217 (258)
T ss_pred cccHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHhcccCccchhheeeee
Confidence 6888999999887643 177999999999999999999999997553
No 237
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=65.83 E-value=12 Score=32.33 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=23.7
Q ss_pred ceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 12 GVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 12 Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
-|++|||.+.|+....++|+..+|+
T Consensus 143 kVviIDead~m~~~aanaLLK~LEe 167 (365)
T PRK07471 143 RVVIVDTADEMNANAANALLKVLEE 167 (365)
T ss_pred EEEEEechHhcCHHHHHHHHHHHhc
Confidence 4899999999999999999999997
No 238
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=65.10 E-value=59 Score=26.56 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=45.8
Q ss_pred CCceEeeccCCC-CCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC---CCCC-CCCc-------cccccc
Q psy7187 10 DGGVVCIDEFDK-MREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV---FGRW-DDTK-------GEQNID 77 (214)
Q Consensus 10 ~~Gv~~iDE~~~-~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~---~g~~-~~~~-------~~~~~~ 77 (214)
.+=|+|+|++.- ..+.....|..+|| |....-|.+..|.||+|-- ...+ |... ..+...
T Consensus 106 ~kFIlf~DDLsFe~~d~~yk~LKs~Le---------Ggle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~e 176 (249)
T PF05673_consen 106 YKFILFCDDLSFEEGDTEYKALKSVLE---------GGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIE 176 (249)
T ss_pred CCEEEEecCCCCCCCcHHHHHHHHHhc---------CccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHH
Confidence 456899999874 23334567888886 3334459999999999974 1111 1110 011121
Q ss_pred CCCCCCCcccEEEEecC
Q psy7187 78 FMPTILSRFDMIFIIKD 94 (214)
Q Consensus 78 l~~~lldRFDL~~~~~~ 94 (214)
=.-+|-|||.|.+....
T Consensus 177 EklSLsDRFGL~l~F~~ 193 (249)
T PF05673_consen 177 EKLSLSDRFGLWLSFYP 193 (249)
T ss_pred HHHhHHHhCCcEEEecC
Confidence 12356799998887654
No 239
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.66 E-value=1.4e+02 Score=27.96 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=16.9
Q ss_pred CCceEeeccCCCCCHHHHHHHHHhhh
Q psy7187 10 DGGVVCIDEFDKMREDDRVAIHEAME 35 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~~~~~L~e~me 35 (214)
+.-|++||||+.+-.....++++.|.
T Consensus 195 ~~~IILIDEiPn~~~r~~~~lq~lLr 220 (637)
T TIGR00602 195 DKKIILVEDLPNQFYRDTRALHEILR 220 (637)
T ss_pred ceeEEEeecchhhchhhHHHHHHHHH
Confidence 34599999997655444445666655
No 240
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=61.25 E-value=9.3 Score=31.25 Aligned_cols=29 Identities=14% Similarity=0.091 Sum_probs=26.5
Q ss_pred ccCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 8 LADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 8 la~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
.+...|++|++.+.|.....++|+..+|+
T Consensus 87 ~g~~KViII~~ae~mt~~AANALLKtLEE 115 (263)
T PRK06581 87 ISGYKVAIIYSAELMNLNAANSCLKILED 115 (263)
T ss_pred cCCcEEEEEechHHhCHHHHHHHHHhhcC
Confidence 35678999999999999999999999997
No 241
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=60.64 E-value=7.5 Score=33.15 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=40.7
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCccc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFD 87 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFD 87 (214)
+...|++||+.++|+....++|+..||+-- +-...|+.|.||. .|.+.+.||.=
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp------------~~t~fiL~t~~~~-------------~lLpTIrSRCq 160 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPP------------ENTWFFLACREPA-------------RLLATLRSRCR 160 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCC------------CCeEEEEEECChh-------------hChHHHHhccc
Confidence 566899999999999999999999999732 1124455666663 27778888874
No 242
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=60.42 E-value=91 Score=28.93 Aligned_cols=76 Identities=29% Similarity=0.399 Sum_probs=43.3
Q ss_pred ceEeeccCCCCCHH--------------HHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCccccccc
Q psy7187 12 GVVCIDEFDKMRED--------------DRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNID 77 (214)
Q Consensus 12 Gv~~iDE~~~~~~~--------------~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~ 77 (214)
-|.||||++-.-.. +++.|+.-|+ |.. =+.-..|+||+|-.. .
T Consensus 244 ~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmD---------GF~--~~~gviviaaTNRpd-V----------- 300 (596)
T COG0465 244 CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMD---------GFG--GNEGVIVIAATNRPD-V----------- 300 (596)
T ss_pred CeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhc---------cCC--CCCceEEEecCCCcc-c-----------
Confidence 48999999875432 4455555453 432 123467778877642 1
Q ss_pred CCCCCC--CcccEEEEecCCCCccccHHHHHHHHHHHHhh
Q psy7187 78 FMPTIL--SRFDMIFIIKDEHDETRDITLAKHIMKVHMTA 115 (214)
Q Consensus 78 l~~~ll--dRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~ 115 (214)
+.++|| .|||=.+.+. .+ |.+..+.|++.|...
T Consensus 301 lD~ALlRpgRFDRqI~V~-~P----Di~gRe~IlkvH~~~ 335 (596)
T COG0465 301 LDPALLRPGRFDRQILVE-LP----DIKGREQILKVHAKN 335 (596)
T ss_pred chHhhcCCCCcceeeecC-Cc----chhhHHHHHHHHhhc
Confidence 222222 4888666552 22 345566788877664
No 243
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=60.07 E-value=13 Score=31.49 Aligned_cols=58 Identities=22% Similarity=0.360 Sum_probs=42.3
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCc-eEEEEeecCCCCCCCCCcccccccCCCCCCCccc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSR-CSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFD 87 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~-~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFD 87 (214)
+...|++||+.+.|+....++|+..+|+-- .+ ..|+.|.||. ++.+.+.||.
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-------------~~t~fiL~t~~~~-------------~lLpTI~SRC- 159 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPA-------------PNCLFLLVTHNQK-------------RLLPTIVSRC- 159 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCC-------------CCeEEEEEECChh-------------hChHHHHhcc-
Confidence 446799999999999999999999999722 22 3445555663 2777889998
Q ss_pred EEEEec
Q psy7187 88 MIFIIK 93 (214)
Q Consensus 88 L~~~~~ 93 (214)
..+.+.
T Consensus 160 q~~~~~ 165 (319)
T PRK06090 160 QQWVVT 165 (319)
T ss_pred eeEeCC
Confidence 444443
No 244
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=59.59 E-value=11 Score=25.39 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=22.2
Q ss_pred CceEeeccC-CCCCHHHHHHHHHhhhc
Q psy7187 11 GGVVCIDEF-DKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 11 ~Gv~~iDE~-~~~~~~~~~~L~e~me~ 36 (214)
-+++++||. ++++++....+.+.+++
T Consensus 64 ~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 64 PRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp BSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 378999998 88999999988888753
No 245
>KOG0990|consensus
Probab=58.06 E-value=9.9 Score=32.30 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=22.9
Q ss_pred ceEeeccCCCCCHHHHHHHHHhhhcCe
Q psy7187 12 GVVCIDEFDKMREDDRVAIHEAMEQQT 38 (214)
Q Consensus 12 Gv~~iDE~~~~~~~~~~~L~e~me~~~ 38 (214)
..+.+||.|-|..+.+++|+.+.|+-+
T Consensus 133 KlvILDEADaMT~~AQnALRRviek~t 159 (360)
T KOG0990|consen 133 KLVILDEADAMTRDAQNALRRVIEKYT 159 (360)
T ss_pred eEEEecchhHhhHHHHHHHHHHHHHhc
Confidence 458999999999999999998776533
No 246
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=57.54 E-value=13 Score=31.05 Aligned_cols=57 Identities=26% Similarity=0.355 Sum_probs=41.5
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCc-eEEEEeecCCCCCCCCCcccccccCCCCCCCccc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSR-CSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFD 87 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~-~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFD 87 (214)
+...|++||+.++|+....++|+..+|+- |.+ ..|+.|.||. .+.+.+.||.
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEP-------------p~~t~~iL~t~~~~-------------~lLpTI~SRc- 155 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEP-------------QSEIYIFLLTNDEN-------------KVLPTIKSRT- 155 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCC-------------CCCeEEEEEECChh-------------hCchHHHHcc-
Confidence 55689999999999999999999999972 222 3444555553 2778899998
Q ss_pred EEEEe
Q psy7187 88 MIFII 92 (214)
Q Consensus 88 L~~~~ 92 (214)
-.+.+
T Consensus 156 q~i~f 160 (290)
T PRK07276 156 QIFHF 160 (290)
T ss_pred eeeeC
Confidence 34444
No 247
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=57.03 E-value=9.1 Score=26.98 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.4
Q ss_pred ceEeeccCCCC-CHHHHHHHHHhhh
Q psy7187 12 GVVCIDEFDKM-REDDRVAIHEAME 35 (214)
Q Consensus 12 Gv~~iDE~~~~-~~~~~~~L~e~me 35 (214)
.+++|||++.+ +....+.|+..++
T Consensus 89 ~~lviDe~~~l~~~~~l~~l~~l~~ 113 (131)
T PF13401_consen 89 VLLVIDEADHLFSDEFLEFLRSLLN 113 (131)
T ss_dssp EEEEEETTHHHHTHHHHHHHHHHTC
T ss_pred eEEEEeChHhcCCHHHHHHHHHHHh
Confidence 48999999999 9989999988777
No 248
>PTZ00463 histone H2B; Provisional
Probab=56.97 E-value=69 Score=22.87 Aligned_cols=65 Identities=15% Similarity=0.234 Sum_probs=43.6
Q ss_pred HHHHHHHHHhHhccCC--CCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHH
Q psy7187 130 PVLKKYINYCRMRCGP--RLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHV 207 (214)
Q Consensus 130 ~~l~~~i~~ar~~~~p--~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv 207 (214)
+-...||.-+-.+++| .+|..++..+.. |+. -..|.|.--|--+|+...+.+++..++
T Consensus 28 esy~~YI~KVLKqVhPd~gIS~kaM~ImnS-fvn-------------------DifErIA~EAs~La~~nkr~TltsrEI 87 (117)
T PTZ00463 28 DSYGLYIFKVLKQVHPDTGISRKSMNIMNS-FLV-------------------DTFEKIATEASRLCKYTRRDTLSSREI 87 (117)
T ss_pred chHHHHHHHHHHhhCCCCCccHHHHHHHHH-HHH-------------------HHHHHHHHHHHHHHHhcCCCcCCHHHH
Confidence 3344566444334677 446777665543 332 126677777788888899999999999
Q ss_pred HHHHhcC
Q psy7187 208 TEALRLF 214 (214)
Q Consensus 208 ~~Ai~lf 214 (214)
..|++|.
T Consensus 88 QtAvrLl 94 (117)
T PTZ00463 88 QTAIRLV 94 (117)
T ss_pred HHHHhhc
Confidence 9999874
No 249
>KOG3595|consensus
Probab=56.95 E-value=34 Score=35.12 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=50.1
Q ss_pred eEeeccCCCCC------HHHHHHHHHhhhcCeE-EEEecceEEEEeCceEEEEeecCC-CCCCCCCcccccccCCCCCCC
Q psy7187 13 VVCIDEFDKMR------EDDRVAIHEAMEQQTI-SIAKAGITTTLNSRCSVLAAANSV-FGRWDDTKGEQNIDFMPTILS 84 (214)
Q Consensus 13 v~~iDE~~~~~------~~~~~~L~e~me~~~i-~i~~~g~~~~lpa~~~viaa~Np~-~g~~~~~~~~~~~~l~~~lld 84 (214)
+.|+||+|.=. ...+..|++.+|.+-. ...+ +. ...--+..+++||||- .|+. .+++.+.-
T Consensus 195 ~~f~ddinmp~~~~yg~q~~~~~lrq~~e~~g~~~~~~-~~-~~~i~~i~~~~a~~~~~~gr~---------~i~~r~~r 263 (1395)
T KOG3595|consen 195 VLFVDDINMPALDKYGDQPPIELLRQMLEHGGFYDRKK-SE-WVEIENVQLVGAMNPPGGGRN---------DITERFLR 263 (1395)
T ss_pred EEEEeccCCchhhhcCCccHHHHHHHHHHhceeecccc-cc-eeEEeeeEEEeecCCCCCccC---------cccHHHHH
Confidence 68999999732 2467789999997544 4444 33 3333469999999974 3443 36666666
Q ss_pred cccEEEEecCCCCccccHHHHHHHHH
Q psy7187 85 RFDMIFIIKDEHDETRDITLAKHIMK 110 (214)
Q Consensus 85 RFDL~~~~~~~~~~~~d~~ia~~il~ 110 (214)
+| .++.+. .++.+.-..+-.+++.
T Consensus 264 ~f-~~~~~~-~~~~~sl~~if~~~~~ 287 (1395)
T KOG3595|consen 264 HF-LIVSLN-YPSQESLTQIFNTILT 287 (1395)
T ss_pred He-eeEeeC-CCChhhHHHHHHHHHh
Confidence 66 333333 3333333334444433
No 250
>PRK06893 DNA replication initiation factor; Validated
Probab=56.48 E-value=90 Score=24.77 Aligned_cols=49 Identities=20% Similarity=0.166 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 146 RLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 146 ~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
.+++++.++|.+.+. =+.|.++.++.--. .+.+.....||.+.|++++.
T Consensus 180 ~l~~~v~~~L~~~~~-----------------~d~r~l~~~l~~l~-~~~~~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 180 ELSDEVANFLLKRLD-----------------RDMHTLFDALDLLD-KASLQAQRKLTIPFVKEILG 228 (229)
T ss_pred CCCHHHHHHHHHhcc-----------------CCHHHHHHHHHHHH-HHHHhcCCCCCHHHHHHHhc
Confidence 589999988876431 14666665554332 23444334799999998875
No 251
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=55.85 E-value=23 Score=25.87 Aligned_cols=32 Identities=16% Similarity=0.051 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 181 RQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 181 R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
|....++.=|+..|+-.++..++.+||+-||.
T Consensus 44 RYt~~vL~DA~~ya~hA~~~~i~~~DVrLAi~ 75 (129)
T PF02291_consen 44 RYTSDVLEDAQVYADHAGRSTIDADDVRLAIQ 75 (129)
T ss_dssp HHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccCChHHHHHHHH
Confidence 44556777788889999999999999999986
No 252
>smart00794 AgrD Staphylococcal AgrD protein. This family consists of several AgrD proteins from many Staphylococcus species. The agr locus was initially described in Staphylococcus aureus as an element controlling the production of exoproteins implicated in virulence. Its pattern of action has been shown to be complex, upregulating certain extracellular toxins and enzymes expressed post-exponentially and repressing some exponential-phase surface components. AgrD encodes the precursor of the autoinducing peptide (AIP).The AIP derived from AgrD by the action of AgrB interacts with AgrC in the membrane to activate AgrA, which upregulates transcription both from promoter P2, amplifying the response, and from P3, initiating the production of a novel effector: RNAIII. In S. aureus, delta-hemolysin is the only translation product of RNA III and is not involved in the regulatory functions of the transcript, which is therefore the primary agent for modulating the expression of other operons con
Probab=55.83 E-value=4.8 Score=23.60 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=12.4
Q ss_pred EEEeecCCCCCCCCC
Q psy7187 56 VLAAANSVFGRWDDT 70 (214)
Q Consensus 56 viaa~Np~~g~~~~~ 70 (214)
.+|..|||.|.||..
T Consensus 20 ~~a~~~~C~~~fDEp 34 (45)
T smart00794 20 NVAGYNPCTGYFDEP 34 (45)
T ss_pred HHhcCCcccccCCCC
Confidence 468899999998864
No 253
>KOG0991|consensus
Probab=55.75 E-value=11 Score=30.88 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=24.6
Q ss_pred CCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 10 DGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
...|+.+||.+-|....+++|+..||-
T Consensus 113 rhKIiILDEADSMT~gAQQAlRRtMEi 139 (333)
T KOG0991|consen 113 RHKIIILDEADSMTAGAQQALRRTMEI 139 (333)
T ss_pred ceeEEEeeccchhhhHHHHHHHHHHHH
Confidence 457899999999999999999999993
No 254
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=55.38 E-value=15 Score=25.35 Aligned_cols=51 Identities=24% Similarity=0.326 Sum_probs=35.5
Q ss_pred CCceEeeccCCCCCHH----HHHHHHHhhhcCeEEEEecceE---EEEeCceEEEEeec
Q psy7187 10 DGGVVCIDEFDKMRED----DRVAIHEAMEQQTISIAKAGIT---TTLNSRCSVLAAAN 61 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~----~~~~L~e~me~~~i~i~~~g~~---~~lpa~~~viaa~N 61 (214)
+..|+++||+...... ....|...+..-......++.. ..+++ -.|++++|
T Consensus 49 ~q~vvi~DD~~~~~~~~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s-~~vi~tsN 106 (107)
T PF00910_consen 49 GQPVVIIDDFGQDNDGYNYSDESELIRLISSNPFQPNMADLEDKGTPFNS-KLVIITSN 106 (107)
T ss_pred CCcEEEEeecCccccccchHHHHHHHHHHhcCCcccccccHhhCCCccCC-CEEEEcCC
Confidence 5678999999998854 6677888888877777766543 33443 34566665
No 255
>KOG1514|consensus
Probab=54.82 E-value=92 Score=29.50 Aligned_cols=68 Identities=24% Similarity=0.192 Sum_probs=40.3
Q ss_pred ceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccEEEE
Q psy7187 12 GVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDMIFI 91 (214)
Q Consensus 12 Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL~~~ 91 (214)
-|++|||++.|=..-++.|+...+ +.+ .=+++..|||-+|-..- . .--|...+-+|.++.=.
T Consensus 510 ~VvLiDElD~Lvtr~QdVlYn~fd--Wpt--------~~~sKLvvi~IaNTmdl----P----Er~l~nrvsSRlg~tRi 571 (767)
T KOG1514|consen 510 TVVLIDELDILVTRSQDVLYNIFD--WPT--------LKNSKLVVIAIANTMDL----P----ERLLMNRVSSRLGLTRI 571 (767)
T ss_pred EEEEeccHHHHhcccHHHHHHHhc--CCc--------CCCCceEEEEecccccC----H----HHHhccchhhhccceee
Confidence 478999999987766677776654 111 11456788888776410 0 00133445567776666
Q ss_pred ecCCCC
Q psy7187 92 IKDEHD 97 (214)
Q Consensus 92 ~~~~~~ 97 (214)
++.+.+
T Consensus 572 ~F~pYt 577 (767)
T KOG1514|consen 572 CFQPYT 577 (767)
T ss_pred ecCCCC
Confidence 655544
No 256
>PF09077 Phage-MuB_C: Mu B transposition protein, C terminal ; InterPro: IPR009084 Bacteriophage Mu can integrate into the host bacterial genome and replicate via transposition. Mu requires the activity of four proteins for DNA transposition. Two of these proteins are the phage-encoded A and B transposition proteins, while the other two are host-specified accessory factors HU and IHF. These four proteins can form nucleoprotein complexes (transposomes), which enable strand transfer. The stable protein-DNA intermediate is subsequently disassembled prior to DNA replication by host proteins. The Mu B transposition protein is an ATP-dependent, DNA-binding protein required for target capture and immunity, as well as for activating transpososome function []. The C-terminal domain of the B transposition protein is believed to be involved in both DNA-binding and protein-protein contacts with the Mu A transposition protein. The structure of the C-terminal domain consists of four helices in an irregular array [].; GO: 0003677 DNA binding, 0006313 transposition, DNA-mediated; PDB: 1F6V_A.
Probab=54.26 E-value=9.6 Score=25.24 Aligned_cols=33 Identities=30% Similarity=0.405 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 179 TVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 179 s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
..|.+...+|+|.-.|+=++.. |+.+|+..|-.
T Consensus 44 aLR~l~ktLrlA~m~A~g~g~~-i~~~~i~~A~~ 76 (78)
T PF09077_consen 44 ALRQLTKTLRLAAMFAKGEGEA-ITADHIRAAWK 76 (78)
T ss_dssp -HHHHHHHHGGGT-TT-TTS---SSHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccCCCc-CCHHHHHHHHH
Confidence 5799999999999999999977 99999998853
No 257
>KOG0731|consensus
Probab=53.27 E-value=1.8e+02 Score=27.94 Aligned_cols=76 Identities=32% Similarity=0.401 Sum_probs=42.6
Q ss_pred ceEeeccCCCCCHH---------------HHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccc
Q psy7187 12 GVVCIDEFDKMRED---------------DRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNI 76 (214)
Q Consensus 12 Gv~~iDE~~~~~~~---------------~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~ 76 (214)
-|+|||||+-.... .++.|+--| +|..++ ....|+|++|--..
T Consensus 405 ~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~em---------Dgf~~~--~~vi~~a~tnr~d~----------- 462 (774)
T KOG0731|consen 405 SIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEM---------DGFETS--KGVIVLAATNRPDI----------- 462 (774)
T ss_pred eEEEecccccccccccccccCCCChHHHHHHHHHHHHh---------cCCcCC--CcEEEEeccCCccc-----------
Confidence 37899999875432 233333333 555444 45788888887533
Q ss_pred cCCCCCC--CcccEEEEecCCCCccccHHHHHHHHHHHHhh
Q psy7187 77 DFMPTIL--SRFDMIFIIKDEHDETRDITLAKHIMKVHMTA 115 (214)
Q Consensus 77 ~l~~~ll--dRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~ 115 (214)
|.++|+ -|||=.+.+ +.++... +..|+..|...
T Consensus 463 -ld~allrpGRfdr~i~i-~~p~~~~----r~~i~~~h~~~ 497 (774)
T KOG0731|consen 463 -LDPALLRPGRFDRQIQI-DLPDVKG----RASILKVHLRK 497 (774)
T ss_pred -cCHHhcCCCccccceec-cCCchhh----hHHHHHHHhhc
Confidence 333333 478755554 3334332 34577777654
No 258
>KOG0870|consensus
Probab=51.62 E-value=1.1e+02 Score=23.39 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=44.9
Q ss_pred CChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHH
Q psy7187 127 LPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSH 206 (214)
Q Consensus 127 l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~D 206 (214)
+|...+.+.+.-+-...+..++++|...|.+...- -+..|...|..+|+=.-|.+++.+|
T Consensus 11 lP~AiI~rlvke~l~E~~vsisKeA~~Ai~raAtV--------------------Fv~~Lts~s~e~A~~q~rKt~sadD 70 (172)
T KOG0870|consen 11 LPNAIITRLVKEVLPESNVSISKEARLAIARAATV--------------------FVIFLTSVSNEIAKDQKRKTISADD 70 (172)
T ss_pred ccHHHHHHHHHHhCccccccccHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHhcccCcccHHH
Confidence 34444444443332212345788988888765432 1457778999999999999999999
Q ss_pred HHHHHh
Q psy7187 207 VTEALR 212 (214)
Q Consensus 207 v~~Ai~ 212 (214)
|..|+.
T Consensus 71 Vl~aL~ 76 (172)
T KOG0870|consen 71 VLKALD 76 (172)
T ss_pred HHHHHH
Confidence 999874
No 259
>KOG0871|consensus
Probab=50.02 E-value=1.1e+02 Score=22.94 Aligned_cols=64 Identities=27% Similarity=0.293 Sum_probs=46.5
Q ss_pred CCCChHHHHHHHHHhHhccCC---CCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCC
Q psy7187 125 GELPLPVLKKYINYCRMRCGP---RLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPF 201 (214)
Q Consensus 125 ~~l~~~~l~~~i~~ar~~~~p---~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~ 201 (214)
-.+|...+.+.|.- +.| .+.+++.++|....++. +.-|-+-|.-++.-+-+.+
T Consensus 11 ~sLPkAtv~KmIke----~lP~d~rvakeareliincCvEF--------------------I~liSsEAneic~~e~KKT 66 (156)
T KOG0871|consen 11 LSLPKATVNKMIKE----MLPKDVRVAKEARELIINCCVEF--------------------INLISSEANEICNKEAKKT 66 (156)
T ss_pred ccCcHHHHHHHHHH----hCCcccccchHHHHHHHHHHHHH--------------------HHHHHHHHHHHHhHHhccc
Confidence 34666666666532 234 67899999999988763 2234456777888888999
Q ss_pred CcHHHHHHHHh
Q psy7187 202 AIDSHVTEALR 212 (214)
Q Consensus 202 V~~~Dv~~Ai~ 212 (214)
|..|||..|++
T Consensus 67 Ia~EHV~KALe 77 (156)
T KOG0871|consen 67 IAPEHVIKALE 77 (156)
T ss_pred CCHHHHHHHHH
Confidence 99999999975
No 260
>KOG0733|consensus
Probab=48.32 E-value=17 Score=33.74 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=29.1
Q ss_pred ceEeeccCCCCCHH-----------HHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC
Q psy7187 12 GVVCIDEFDKMRED-----------DRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV 63 (214)
Q Consensus 12 Gv~~iDE~~~~~~~-----------~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~ 63 (214)
-|+|||||+-+.+. +...|+..|+.-.. ..+......||||+|--
T Consensus 284 civFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~-------~~~~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 284 CIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSN-------EKTKGDPVLVIGATNRP 339 (802)
T ss_pred eEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccc-------cccCCCCeEEEecCCCC
Confidence 47999999987653 45566666764211 11223458999999864
No 261
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=48.09 E-value=59 Score=24.97 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=21.5
Q ss_pred CceEeeccCCCCC---HHHHHHHHHhhhcCeE
Q psy7187 11 GGVVCIDEFDKMR---EDDRVAIHEAMEQQTI 39 (214)
Q Consensus 11 ~Gv~~iDE~~~~~---~~~~~~L~e~me~~~i 39 (214)
.-|..|||+-.|- ++..+++.++|.+++-
T Consensus 101 aDvIIIDEIGpMElks~~f~~~ve~vl~~~kp 132 (179)
T COG1618 101 ADVIIIDEIGPMELKSKKFREAVEEVLKSGKP 132 (179)
T ss_pred CCEEEEecccchhhccHHHHHHHHHHhcCCCc
Confidence 4588999998864 4566778888877663
No 262
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=46.66 E-value=23 Score=25.26 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=42.6
Q ss_pred CChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHH
Q psy7187 127 LPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSH 206 (214)
Q Consensus 127 l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~D 206 (214)
+|...+.+++.-.+ ....++..|.-++...-.. + ..-++.+|-..|+-..+..|+++|
T Consensus 21 fPV~ri~R~Lk~~~--~a~RVs~~A~VyLaAvLEY----------------L----~aEIlelA~n~ak~~k~krItp~h 78 (115)
T cd00074 21 FPVGRIHRYLKKGR--YAERVGAGAPVYLAAVLEY----------------L----TAEVLELAGNAARDNKKKRITPRH 78 (115)
T ss_pred CcHHHHHHHHHcCc--cccccccchHHHHHHHHHH----------------H----HHHHHHHHHHHHHHcCCCeEcHHH
Confidence 56667777763211 1235777776666543221 1 124778888999999999999999
Q ss_pred HHHHHh
Q psy7187 207 VTEALR 212 (214)
Q Consensus 207 v~~Ai~ 212 (214)
+..|+.
T Consensus 79 i~lAi~ 84 (115)
T cd00074 79 LQLAVR 84 (115)
T ss_pred HHHHHh
Confidence 999875
No 263
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=46.39 E-value=19 Score=21.03 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=16.7
Q ss_pred HHHHhccCCCCCCcHHHHHHHH
Q psy7187 190 AESMAKMQLEPFAIDSHVTEAL 211 (214)
Q Consensus 190 A~a~A~l~~r~~V~~~Dv~~Ai 211 (214)
|+..|+-.+...|+.+|+..|+
T Consensus 1 A~~~A~~~~~~~i~~eHlL~al 22 (53)
T PF02861_consen 1 AQELARERGHQYISPEHLLLAL 22 (53)
T ss_dssp HHHHHHHTTBSSE-HHHHHHHH
T ss_pred CHHHHHHcCCCcccHHHHHHHH
Confidence 4567788888999999988774
No 264
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=45.39 E-value=1.3e+02 Score=25.03 Aligned_cols=78 Identities=18% Similarity=0.138 Sum_probs=51.4
Q ss_pred eeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecce-EEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCC
Q psy7187 6 MVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGI-TTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILS 84 (214)
Q Consensus 6 l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~-~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lld 84 (214)
-.+.+.-+++.||++.-.....+.|........|++.+-+. .+++.-.+.++.++|-...-- .-+..+..
T Consensus 124 a~l~gk~l~~~~E~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~---------~~~~a~~R 194 (304)
T TIGR01613 124 ARLEGKRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIR---------GFDGGIKR 194 (304)
T ss_pred hhhcCCEEEEecCCCCCccccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccC---------CCChhhee
Confidence 34566778999999864444456777777778899986553 555555688888888642210 13566777
Q ss_pred cccEEEEec
Q psy7187 85 RFDMIFIIK 93 (214)
Q Consensus 85 RFDL~~~~~ 93 (214)
|+ +++...
T Consensus 195 R~-~vi~f~ 202 (304)
T TIGR01613 195 RL-RIIPFT 202 (304)
T ss_pred eE-EEEecc
Confidence 88 565544
No 265
>COG1485 Predicted ATPase [General function prediction only]
Probab=44.97 E-value=27 Score=30.10 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=27.3
Q ss_pred cCCceEeeccCCCCCH---HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC
Q psy7187 9 ADGGVVCIDEFDKMRE---DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV 63 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~---~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~ 63 (214)
++--|+|+|||.--+. -++..|+++|=.. -++|+||+|-.
T Consensus 129 ~~~~vLCfDEF~VtDI~DAMiL~rL~~~Lf~~---------------GV~lvaTSN~~ 171 (367)
T COG1485 129 AETRVLCFDEFEVTDIADAMILGRLLEALFAR---------------GVVLVATSNTA 171 (367)
T ss_pred hcCCEEEeeeeeecChHHHHHHHHHHHHHHHC---------------CcEEEEeCCCC
Confidence 4457999999987544 3566677666421 26778888876
No 266
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=43.47 E-value=20 Score=29.83 Aligned_cols=42 Identities=19% Similarity=0.273 Sum_probs=28.8
Q ss_pred CceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC
Q psy7187 11 GGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV 63 (214)
Q Consensus 11 ~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~ 63 (214)
+=|++|||+|+++++....+++.+.. . ... .++.+|-++|+.
T Consensus 173 ~iViiIDdLDR~~~~~i~~~l~~ik~-~---------~~~-~~i~~Il~~D~~ 214 (325)
T PF07693_consen 173 RIVIIIDDLDRCSPEEIVELLEAIKL-L---------LDF-PNIIFILAFDPE 214 (325)
T ss_pred eEEEEEcchhcCCcHHHHHHHHHHHH-h---------cCC-CCeEEEEEecHH
Confidence 45789999999999876667776653 1 111 356777777774
No 267
>PF05931 AgrD: Staphylococcal AgrD protein; InterPro: IPR009229 This family consists of several AgrD proteins from many Staphylococcus species. The agr locus was initially described in Staphylococcus aureus as an element controlling the production of exoproteins implicated in virulence. Its pattern of action has been shown to be complex, upregulating certain extracellular toxins and enzymes expressed post-exponentially and repressing some exponential-phase surface components. AgrD encodes the precursor of the autoinducing peptide (AIP).The AIP derived from AgrD by the action of AgrB interacts with AgrC in the membrane to activate AgrA, which upregulates transcription both from promoter P2, amplifying the response, and from P3, initiating the production of a novel effector: RNAIII. In S. aureus, delta-hemolysin is the only translation product of RNA III and is not involved in the regulatory functions of the transcript, which is therefore the primary agent for modulating the expression of other operons controlled by agr [].
Probab=42.80 E-value=10 Score=22.22 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=12.1
Q ss_pred EEEeecCCCCCCCCC
Q psy7187 56 VLAAANSVFGRWDDT 70 (214)
Q Consensus 56 viaa~Np~~g~~~~~ 70 (214)
.+|..|||.|.||..
T Consensus 20 ~~a~~~~C~~~~DEp 34 (45)
T PF05931_consen 20 NVAGYNPCSGYFDEP 34 (45)
T ss_pred hhhccCccceeccCC
Confidence 468889999998864
No 268
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=42.00 E-value=91 Score=19.85 Aligned_cols=48 Identities=23% Similarity=0.289 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 145 PRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 145 p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
+.+++++...|..-... | +.-++.-|.-.++-..|...+.+||..|++
T Consensus 19 ~~l~de~a~~La~dvey-------------------r-lreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 19 SNLSDEAAKALAEDVEY-------------------R-LREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp --B-HHHHHHHHHHHHH-------------------H-HHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred CCCCHHHHHHHHHHHHH-------------------H-HHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 46888888888654321 1 446778888888889999999999999974
No 269
>COG5247 BUR6 Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]
Probab=41.11 E-value=35 Score=23.66 Aligned_cols=29 Identities=14% Similarity=0.095 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 184 EAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 184 ~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
..|+.+|.--||...+..+|.++++.|++
T Consensus 59 ~~iv~~s~k~aR~~~skR~t~e~lk~a~~ 87 (113)
T COG5247 59 TEIVGLSLKEARKKSSKRMTSEFLKRATE 87 (113)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHh
Confidence 36788899999999999999999998874
No 270
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=40.50 E-value=1.3e+02 Score=28.91 Aligned_cols=127 Identities=14% Similarity=0.113 Sum_probs=72.2
Q ss_pred ccCCceEeeccCCCCC---------HHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccC
Q psy7187 8 LADGGVVCIDEFDKMR---------EDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDF 78 (214)
Q Consensus 8 la~~Gv~~iDE~~~~~---------~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l 78 (214)
.+.+=|+||||+..+= -+.-+.|.-+|..|++. .|||+.-.+- ...+.-
T Consensus 260 ~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~---------------~IGATT~~EY-------Rk~iEK 317 (786)
T COG0542 260 KSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELR---------------CIGATTLDEY-------RKYIEK 317 (786)
T ss_pred cCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeE---------------EEEeccHHHH-------HHHhhh
Confidence 3456789999998641 23556677777776654 3555544311 122344
Q ss_pred CCCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccC-CCCCHHHHHHHHH
Q psy7187 79 MPTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCG-PRLTHEAGEKLKN 157 (214)
Q Consensus 79 ~~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~-p~ls~ea~~~i~~ 157 (214)
.++|--||--+++ +.|+.+.... |++--..... ..-+-.++.+-|..-..+..+|+. ..|++.|.+++-.
T Consensus 318 D~AL~RRFQ~V~V--~EPs~e~ti~----ILrGlk~~yE---~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDe 388 (786)
T COG0542 318 DAALERRFQKVLV--DEPSVEDTIA----ILRGLKERYE---AHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDE 388 (786)
T ss_pred chHHHhcCceeeC--CCCCHHHHHH----HHHHHHHHHH---HccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHH
Confidence 5777778854443 3344333322 3332222111 122335677777776666666553 5788889999888
Q ss_pred HHHHHhcC
Q psy7187 158 RYVLMRNG 165 (214)
Q Consensus 158 ~y~~~r~~ 165 (214)
.....|-.
T Consensus 389 A~a~~~l~ 396 (786)
T COG0542 389 AGARVRLE 396 (786)
T ss_pred HHHHHHhc
Confidence 87766543
No 271
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=39.46 E-value=36 Score=28.42 Aligned_cols=29 Identities=28% Similarity=0.341 Sum_probs=26.2
Q ss_pred ccCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 8 LADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 8 la~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
.+..-|++||+.+.|+....++|+..||+
T Consensus 91 ~~~~kv~iI~~ad~m~~~a~naLLK~LEe 119 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQAQNAFLKTIEE 119 (313)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHhcC
Confidence 35677999999999999999999999996
No 272
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=38.93 E-value=26 Score=28.86 Aligned_cols=27 Identities=11% Similarity=0.234 Sum_probs=25.1
Q ss_pred CCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 10 DGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
...|++|++.++|+....++|+..+|+
T Consensus 88 ~~KV~II~~ae~m~~~AaNaLLK~LEE 114 (261)
T PRK05818 88 GKKIYIIYGIEKLNKQSANSLLKLIEE 114 (261)
T ss_pred CCEEEEeccHhhhCHHHHHHHHHhhcC
Confidence 457999999999999999999999997
No 273
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=37.45 E-value=30 Score=22.19 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=17.0
Q ss_pred cceeeccCCceEeeccCCC
Q psy7187 3 GGAMVLADGGVVCIDEFDK 21 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~ 21 (214)
.|.+.|+||..+.+.+++.
T Consensus 36 GG~v~L~NGw~l~lp~l~~ 54 (67)
T TIGR02934 36 GGWVTLANGWRLELPEIPD 54 (67)
T ss_pred cCEEEECCccEEEeCCCCC
Confidence 6999999999999999864
No 274
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=36.60 E-value=1.3e+02 Score=25.82 Aligned_cols=48 Identities=27% Similarity=0.314 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 146 RLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 146 ~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
.+++++...|...... | +..++.-|.-.++-..|..++.+||..|++.
T Consensus 16 ~~~~~a~~~La~~~e~-~-------------------~~~i~~~A~k~~~hskR~~l~~~Di~~Al~~ 63 (343)
T cd08050 16 SLSDEVAQLLAEDVEY-R-------------------LREIIQEAAKFMRHSKRRKLTTSDVNHALRL 63 (343)
T ss_pred cCCHHHHHHHHHHHHH-H-------------------HHHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Confidence 6888888877654422 1 4467888888999999999999999999874
No 275
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=34.87 E-value=47 Score=21.82 Aligned_cols=29 Identities=21% Similarity=0.061 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhccCCCCCCcHHHHHHHH
Q psy7187 183 LEAIVRIAESMAKMQLEPFAIDSHVTEAL 211 (214)
Q Consensus 183 l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai 211 (214)
++.+-+==++.|+=.+|+.|+.+||.-..
T Consensus 42 ~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~ 70 (76)
T PF15630_consen 42 LENLAKDLEAFAKHAGRSTINMDDVKLLA 70 (76)
T ss_dssp HHHHHHHHHHHHHHTT-SEE-HHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCeecHHHHHHHh
Confidence 33333344678888899999999998654
No 276
>PF13173 AAA_14: AAA domain
Probab=34.16 E-value=53 Score=23.28 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=19.8
Q ss_pred CCceEeeccCCCCCHHHHHHHHHhhhcC
Q psy7187 10 DGGVVCIDEFDKMREDDRVAIHEAMEQQ 37 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~~~~~L~e~me~~ 37 (214)
.+.++||||+..++. ....+....+.+
T Consensus 61 ~~~~i~iDEiq~~~~-~~~~lk~l~d~~ 87 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD-WEDALKFLVDNG 87 (128)
T ss_pred CCcEEEEehhhhhcc-HHHHHHHHHHhc
Confidence 568899999999985 555666666543
No 277
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=34.14 E-value=30 Score=14.92 Aligned_cols=13 Identities=15% Similarity=0.143 Sum_probs=9.4
Q ss_pred HHHHHHHhhhcCe
Q psy7187 26 DRVAIHEAMEQQT 38 (214)
Q Consensus 26 ~~~~L~e~me~~~ 38 (214)
+.++|+|+++.|.
T Consensus 2 vmdsllealqtg~ 14 (15)
T PF06345_consen 2 VMDSLLEALQTGS 14 (15)
T ss_dssp HHHHHHHHHHHST
T ss_pred cHHHHHHHHHccC
Confidence 4567888888763
No 278
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=34.03 E-value=40 Score=33.97 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=26.7
Q ss_pred eEeeccCCCCCHHHHHHHHHhhhcCeEEE
Q psy7187 13 VVCIDEFDKMREDDRVAIHEAMEQQTISI 41 (214)
Q Consensus 13 v~~iDE~~~~~~~~~~~L~e~me~~~i~i 41 (214)
+|.|||+.++++.....|++.+++..|+|
T Consensus 1150 hwpiDEiG~L~~~Nv~~l~~~~~~nnI~l 1178 (1201)
T PF12128_consen 1150 HWPIDEIGKLHPNNVKKLLDMCNSNNISL 1178 (1201)
T ss_pred EeeehhhccCChHHHHHHHHHHHhCCceE
Confidence 48899999999999999999999888776
No 279
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=32.72 E-value=46 Score=28.21 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=26.6
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcC
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQ 37 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~ 37 (214)
+...|++||+++.|++...+.|+..||+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep 140 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEP 140 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhC
Confidence 56789999999999999999999999974
No 280
>KOG0737|consensus
Probab=32.20 E-value=19 Score=31.13 Aligned_cols=86 Identities=26% Similarity=0.348 Sum_probs=48.8
Q ss_pred ceEeeccCCCCCHHHHHHHHHhhhc---CeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccE
Q psy7187 12 GVVCIDEFDKMREDDRVAIHEAMEQ---QTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDM 88 (214)
Q Consensus 12 Gv~~iDE~~~~~~~~~~~L~e~me~---~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL 88 (214)
-|.||||++.|-..=...=||+|.. +.-+ .=.|....=.++..|+||+|--.. |..+++.|+-=
T Consensus 188 ~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~-~WDGl~s~~~~rVlVlgATNRP~D------------lDeAiiRR~p~ 254 (386)
T KOG0737|consen 188 SIIFIDEVDSFLGQRRSTDHEATAMMKNEFMA-LWDGLSSKDSERVLVLGATNRPFD------------LDEAIIRRLPR 254 (386)
T ss_pred ceeehhhHHHHHhhcccchHHHHHHHHHHHHH-HhccccCCCCceEEEEeCCCCCcc------------HHHHHHHhCcc
Confidence 5789999987542112222444432 1100 113444444557899999987532 77788888865
Q ss_pred EEEecCCCCccccHHHHHHHHHH
Q psy7187 89 IFIIKDEHDETRDITLAKHIMKV 111 (214)
Q Consensus 89 ~~~~~~~~~~~~d~~ia~~il~~ 111 (214)
.|.+ ..|+.....+|-+-|++.
T Consensus 255 rf~V-~lP~~~qR~kILkviLk~ 276 (386)
T KOG0737|consen 255 RFHV-GLPDAEQRRKILKVILKK 276 (386)
T ss_pred eeee-CCCchhhHHHHHHHHhcc
Confidence 5544 344555566666656553
No 281
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=32.15 E-value=3.6e+02 Score=23.84 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHH
Q psy7187 179 TVRQLEAIVRIAESMAKMQLEPFAIDSHVTEAL 211 (214)
Q Consensus 179 s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai 211 (214)
++|.++..+.---+.|...++ .+|.+-|.+++
T Consensus 279 nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~L 310 (408)
T COG0593 279 NVRELEGALNRLDAFALFTKR-AITIDLVKEIL 310 (408)
T ss_pred cHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHH
Confidence 456666655555555555554 55655555554
No 282
>PRK10536 hypothetical protein; Provisional
Probab=31.18 E-value=66 Score=26.50 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=22.1
Q ss_pred CCceEeeccCCCCCHHHHHHHHHhhh
Q psy7187 10 DGGVVCIDEFDKMREDDRVAIHEAME 35 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~~~~~L~e~me 35 (214)
+++++++||...+++.....++..+.
T Consensus 176 ~~~~vIvDEaqn~~~~~~k~~ltR~g 201 (262)
T PRK10536 176 ENAVVILDEAQNVTAAQMKMFLTRLG 201 (262)
T ss_pred cCCEEEEechhcCCHHHHHHHHhhcC
Confidence 57899999999999988888876554
No 283
>PF06988 NifT: NifT/FixU protein; InterPro: IPR009727 This family consists of several NifT and FixU bacterial proteins. The function of NifT is unknown although it is thought that the protein may be involved in biosynthesis of the FeMo cofactor of nitrogenase although perturbation of nifT expression in Klebsiella pneumoniae has only a limited effect on nitrogen fixation [].; GO: 0009399 nitrogen fixation; PDB: 2JN4_A.
Probab=30.75 E-value=41 Score=21.35 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=12.7
Q ss_pred cceeeccCCceEeeccCCC
Q psy7187 3 GGAMVLADGGVVCIDEFDK 21 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~ 21 (214)
.|.+.|+||..+.+.+++.
T Consensus 36 GG~v~L~NGw~l~lp~~~~ 54 (64)
T PF06988_consen 36 GGEVTLANGWELYLPPLPA 54 (64)
T ss_dssp SSEEEETTS-EEE----SS
T ss_pred CCEEEECCcCEEEeCCCCC
Confidence 6999999999999998876
No 284
>KOG1659|consensus
Probab=30.37 E-value=80 Score=25.07 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 183 LEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 183 l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
++.|+..+--.++.++.+.|+.+|++.|+.
T Consensus 48 l~~l~~~t~~~t~~~~aKt~s~~hlkq~v~ 77 (224)
T KOG1659|consen 48 LESLLQKTLEITRSRGAKTVSSSHLKQAVE 77 (224)
T ss_pred HHHHHHHHHHHHHhcCccccCHHHHHHHHh
Confidence 567888888999999999999999999985
No 285
>KOG0652|consensus
Probab=30.33 E-value=63 Score=26.96 Aligned_cols=44 Identities=30% Similarity=0.501 Sum_probs=31.4
Q ss_pred ceEeeccCCCC-----------CHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC
Q psy7187 12 GVVCIDEFDKM-----------REDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV 63 (214)
Q Consensus 12 Gv~~iDE~~~~-----------~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~ 63 (214)
-|.||||++-+ +.+++.+++|-+.|- .|.+ -..+.-||||+|-.
T Consensus 266 ~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQL------DGFs--s~~~vKviAATNRv 320 (424)
T KOG0652|consen 266 TIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQL------DGFS--SDDRVKVIAATNRV 320 (424)
T ss_pred eEEEEechhhhccccccccccccHHHHHHHHHHHHhh------cCCC--CccceEEEeecccc
Confidence 58999999854 345777888888751 3432 24578999999975
No 286
>KOG2170|consensus
Probab=30.01 E-value=30 Score=29.26 Aligned_cols=31 Identities=13% Similarity=0.160 Sum_probs=25.5
Q ss_pred eeccCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 6 MVLADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 6 l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
+..-++.+...||.+||++..++.|.--++.
T Consensus 174 v~~C~rslFIFDE~DKmp~gLld~lkpfLdy 204 (344)
T KOG2170|consen 174 VQACQRSLFIFDEVDKLPPGLLDVLKPFLDY 204 (344)
T ss_pred HHhcCCceEEechhhhcCHhHHHHHhhhhcc
Confidence 3445678999999999999999998877763
No 287
>PF10987 DUF2806: Protein of unknown function (DUF2806); InterPro: IPR021254 This bacterial family of proteins has no known function.
Probab=29.90 E-value=2.9e+02 Score=22.00 Aligned_cols=62 Identities=10% Similarity=0.162 Sum_probs=43.2
Q ss_pred CCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhcc
Q psy7187 122 ASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKM 196 (214)
Q Consensus 122 ~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l 196 (214)
.....++.+-+.+|...|.. +|++.++.|..-...-... .+..+|.|++..|-.++.--|++
T Consensus 34 ~~~~~vD~DWl~~f~~~A~~-----isn~~mQ~LWakILa~Ei~--------~PGs~SlrtL~~Lk~mt~~eA~l 95 (219)
T PF10987_consen 34 VTGEPVDPDWLYRFFDMAED-----ISNEEMQELWAKILAGEIK--------NPGSFSLRTLQTLKQMTKKEAQL 95 (219)
T ss_pred cCCCCCChHHHHHHHHHHHh-----cCcHHHHHHHHHHHHHHhc--------CCCCCCHHHHHHHHhCCHHHHHH
Confidence 34556789999999999987 5776666665554432221 23568999999988887766654
No 288
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=28.66 E-value=1.2e+02 Score=27.50 Aligned_cols=47 Identities=30% Similarity=0.254 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 146 RLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 146 ~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
..++||...|.+ .|+-+| ..+-+-++..|+-++.+.||.+.+.+|..
T Consensus 469 ~w~~ea~~~l~~------------------~P~f~r--~~~r~~~e~~a~~~g~~~it~~~~~~a~~ 515 (519)
T PRK02910 469 VWTPEAEAELKK------------------IPFFVR--GKVRRNTEKFARERGLPEITLEVLYDAKA 515 (519)
T ss_pred CCCHHHHHHHhh------------------CChhhH--HHHHHHHHHHHHHcCCCeecHHHHHHHHH
Confidence 578899888832 455566 67778999999999999999999999865
No 289
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=28.50 E-value=1.2e+02 Score=27.60 Aligned_cols=47 Identities=21% Similarity=0.104 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 146 RLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 146 ~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
..++||...|.+ .|+-.| ..+-+-++..|+-++.+.||.+.+.+|-.
T Consensus 463 ~w~~ea~~~l~~------------------iP~f~r--~~~r~~~e~~a~~~g~~~it~~~~~~a~~ 509 (513)
T CHL00076 463 IWSPESQLELSK------------------IPGFVR--GKVKRNTEKFARQNGITNITVEVMYAAKE 509 (513)
T ss_pred CCCHHHHHHHHh------------------CCHHhH--HHHHHHHHHHHHHcCCCeEcHHHHHHHHH
Confidence 467888877754 345556 67778999999999999999999999864
No 290
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=28.10 E-value=1.3e+02 Score=27.27 Aligned_cols=48 Identities=25% Similarity=0.219 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 146 RLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 146 ~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
..++||...|.+ .|+-+| ..+-+-++..|+-++.+.||.+.+.+|-.-
T Consensus 462 ~w~~ea~~~l~~------------------~P~f~r--~~~r~~~e~~a~~~g~~~it~~~~~~a~~~ 509 (511)
T TIGR01278 462 GWTAEAEAELKK------------------VPFFVR--GKVRRNTENFARERGYSVITLEVIYAAKEH 509 (511)
T ss_pred CcCHHHHHHHhh------------------CChhhh--HHHHHHHHHHHHHcCCCEEcHHHHHHHHHh
Confidence 467888887732 455566 677899999999999999999999998654
No 291
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=27.74 E-value=64 Score=27.08 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=25.8
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
++..|+.||+.++|+....++|+..||+
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEE 116 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEE 116 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhC
Confidence 4778999999999999999999999996
No 292
>PRK04296 thymidine kinase; Provisional
Probab=26.97 E-value=71 Score=24.57 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=17.9
Q ss_pred ceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 12 GVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 12 Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
-+++|||+..++.+....|.+.+..
T Consensus 80 dvviIDEaq~l~~~~v~~l~~~l~~ 104 (190)
T PRK04296 80 DCVLIDEAQFLDKEQVVQLAEVLDD 104 (190)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHH
Confidence 5899999999987744445555443
No 293
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=26.05 E-value=39 Score=29.16 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=24.8
Q ss_pred cCCc-eEeeccCCCCCHH---HHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC
Q psy7187 9 ADGG-VVCIDEFDKMRED---DRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV 63 (214)
Q Consensus 9 a~~G-v~~iDE~~~~~~~---~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~ 63 (214)
+.+. |+|+|||.--+.. ++..|++.|= .-...||||+|-.
T Consensus 125 ~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~---------------~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 125 AKESRLLCFDEFQVTDIADAMILKRLFEALF---------------KRGVVLVATSNRP 168 (362)
T ss_pred HhcCCEEEEeeeeccchhHHHHHHHHHHHHH---------------HCCCEEEecCCCC
Confidence 3444 9999999875543 4444555442 2235677888865
No 294
>PF00273 Serum_albumin: Serum albumin family; InterPro: IPR014760 A number of serum transport proteins are known to be evolutionarily related, including albumin, alpha-fetoprotein, vitamin D-binding protein and afamin [, , ]. Albumin is the main protein of plasma; it binds water, cations (such as Ca2+, Na+ and K+), fatty acids, hormones, bilirubin and drugs - its main function is to regulate the colloidal osmotic pressure of blood. Alphafeto- protein (alpha-fetoglobulin) is a foetal plasma protein that binds various cations, fatty acids and bilirubin. Vitamin D-binding protein binds to vitamin D and its metabolites, as well as to fatty acids. The biological role of afamin (alpha-albumin) has not yet been characterised. The 3D structure of human serum albumin has been determined by X-ray crystallography to a resolution of 2.8A []. It comprises three homologous domains that assemble to form a heart-shaped molecule []. Each domain is a product of two subdomains that possess common structural motifs []. The principal regions of ligand binding to human serum albumin are located in hydrophobic cavities in subdomains IIA and IIIA, which exhibit similar chemistry. Structurally, the serum albumins are similar, each domain containing five or six internal disulphide bonds, as shown schematically below: +---+ +----+ +-----+ | | | | | | xxCxxxxxxxxxxxxxxxxCCxxCxxxxCxxxxxCCxxxCxxxxxxxxxCxxxxxxxxxxxxxxCCxxxxCxxxx | | | | | | +-----------------+ +-----+ +---------------+ ; GO: 0005615 extracellular space; PDB: 3V09_A 3V03_B 3MRK_P 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A 2BXL_A ....
Probab=24.30 E-value=1.8e+02 Score=22.14 Aligned_cols=31 Identities=19% Similarity=0.401 Sum_probs=22.4
Q ss_pred HHHHHHH-HHhHhccCCCCCHHHHHHHHHHHHHH
Q psy7187 130 PVLKKYI-NYCRMRCGPRLTHEAGEKLKNRYVLM 162 (214)
Q Consensus 130 ~~l~~~i-~~ar~~~~p~ls~ea~~~i~~~y~~~ 162 (214)
..+.+|+ .|+|+ +|.++.+....+...|..+
T Consensus 133 ~~~~~~lye~~Rr--hP~~~~~~l~~~~~~y~~~ 164 (178)
T PF00273_consen 133 KFLQRFLYELSRR--HPELSDPQLLRIAKGYEKM 164 (178)
T ss_dssp HHHHHHHHHHHHH--STTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHH
Confidence 4556665 78887 6899998888888878665
No 295
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A.
Probab=23.35 E-value=80 Score=20.68 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=12.3
Q ss_pred ccCCceEeeccCCCCCHHHHHHH
Q psy7187 8 LADGGVVCIDEFDKMREDDRVAI 30 (214)
Q Consensus 8 la~~Gv~~iDE~~~~~~~~~~~L 30 (214)
-.|||+.+-+++++++.+.+..+
T Consensus 23 A~DGGLyvP~~iP~l~~~~l~~l 45 (79)
T PF14821_consen 23 APDGGLYVPEEIPKLSKEELEEL 45 (79)
T ss_dssp BTTSB-EEESS-----HHHHHHH
T ss_pred CCCCeeEecCcCCCCCHHHHHHH
Confidence 46889999999999887755544
No 296
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=22.46 E-value=75 Score=27.59 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=22.4
Q ss_pred cCCceEeeccCCC-CCHHHHHHHHHhhhc
Q psy7187 9 ADGGVVCIDEFDK-MREDDRVAIHEAMEQ 36 (214)
Q Consensus 9 a~~Gv~~iDE~~~-~~~~~~~~L~e~me~ 36 (214)
-.-||+++||+|. ++|.-++.+.+-|++
T Consensus 294 ~tpgivLiDeIdlflhP~WQQqi~qkL~s 322 (440)
T COG3950 294 LTPGIVLIDEIDLFLHPKWQQQINQKLLS 322 (440)
T ss_pred CCCceEEeehhhhhcCHHHHHHHHHHHHh
Confidence 3469999999999 777777777777774
No 297
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=22.35 E-value=2.4e+02 Score=18.64 Aligned_cols=34 Identities=6% Similarity=0.104 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHH
Q psy7187 128 PLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVL 161 (214)
Q Consensus 128 ~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~ 161 (214)
+...+|++|.-+-+..+..+|++-.+.|+++...
T Consensus 29 dE~~vR~lIk~vs~~an~~Vs~~~ed~IV~~I~~ 62 (79)
T PF14069_consen 29 DEKKVRQLIKQVSQIANKPVSKEQEDQIVQAIIN 62 (79)
T ss_pred cHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 4567888886665555667999999999998865
No 298
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=22.14 E-value=98 Score=24.59 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=16.1
Q ss_pred HHHhccC-CCCCCcHHHHHHHHhcC
Q psy7187 191 ESMAKMQ-LEPFAIDSHVTEALRLF 214 (214)
Q Consensus 191 ~a~A~l~-~r~~V~~~Dv~~Ai~lf 214 (214)
...-|.+ +.+.|+++|+..|+.+|
T Consensus 121 ~~~nr~R~g~~lISp~Di~~A~~~l 145 (223)
T PF04157_consen 121 CRYNRARGGSELISPEDILRACKLL 145 (223)
T ss_dssp HHHHHCTTTSST--HHHHHHHHHHH
T ss_pred HHHHHhcccCCCcCHHHHHHHHHHH
Confidence 3344455 77899999999999764
No 299
>COG4701 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.09 E-value=1.9e+02 Score=21.52 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=29.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhcc
Q psy7187 143 CGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKM 196 (214)
Q Consensus 143 ~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l 196 (214)
..|.+|+.+...+.....+.+-. --|.+++|-|++++.+++
T Consensus 121 ~~~~~s~~~~h~~l~~a~~~~~~-------------~~~~~~~l~~~~~~~~~~ 161 (162)
T COG4701 121 PRPPLSEHAAHVLLAIADQASDK-------------VKKRLQSLARLAKANQKD 161 (162)
T ss_pred CCCCCChHHHHHHHHHHHHHHHH-------------HHhCHHHHHHHHHHhccc
Confidence 35788998888887766554422 235589999999999875
No 300
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=21.92 E-value=68 Score=23.58 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=17.5
Q ss_pred CCceEeeccCCCCCH-HHHHHHHHhhh
Q psy7187 10 DGGVVCIDEFDKMRE-DDRVAIHEAME 35 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~-~~~~~L~e~me 35 (214)
.-+++++||...+++ .....+...+.
T Consensus 129 ~~~~iIiDE~h~~~~~~~~~~~~~~~~ 155 (201)
T smart00487 129 NVDLVILDEAHRLLDGGFGDQLEKLLK 155 (201)
T ss_pred HCCEEEEECHHHHhcCCcHHHHHHHHH
Confidence 346899999999987 44444444443
No 301
>PF14459 Prok-E2_C: Prokaryotic E2 family C
Probab=21.14 E-value=1.8e+02 Score=20.55 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=20.9
Q ss_pred cCeEEEEecceEEEEeCceEEEEeecCC
Q psy7187 36 QQTISIAKAGITTTLNSRCSVLAAANSV 63 (214)
Q Consensus 36 ~~~i~i~~~g~~~~lpa~~~viaa~Np~ 63 (214)
+-.|.|.|.|.+ |.-|.|+++.||.
T Consensus 54 Np~I~i~r~G~s---~~~clV~G~trp~ 78 (131)
T PF14459_consen 54 NPRIEIRRSGSS---PMHCLVIGSTRPK 78 (131)
T ss_pred CCCeEEEecCCC---ceEEEEecCCCCC
Confidence 367899998887 5569999999996
No 302
>PF10555 MraY_sig1: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ; InterPro: IPR018480 Phospho-N-acetylmuramoyl-pentapeptide-transferase (2.7.8.13 from EC) (MraY) is a bacterial enzyme responsible for the formation of the first lipid intermediate of the cell wall peptidoglycan synthesis []. It catalyses the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. MraY is an integral membrane protein with probably ten transmembrane domains. It belongs to family 4 of glycosyl transferases. Homologues of MraY have been found in archaebacteria Methanobacterium thermoautotrophicum and in Arabidopsis thaliana (Mouse-ear cress). This entry represents two conserved sites found in these proteins. The first site is located at the end of the first cytoplasmic loop and the beginning of the second transmembrane domain. The second site is located in the third cytoplasmic loop.
Probab=20.98 E-value=49 Score=14.01 Aligned_cols=7 Identities=57% Similarity=0.947 Sum_probs=4.4
Q ss_pred CCceEee
Q psy7187 10 DGGVVCI 16 (214)
Q Consensus 10 ~~Gv~~i 16 (214)
=|||+||
T Consensus 7 MGGi~~i 13 (13)
T PF10555_consen 7 MGGIVFI 13 (13)
T ss_pred ceeEEEC
Confidence 3677764
No 303
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=20.52 E-value=5.6e+02 Score=22.13 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=43.5
Q ss_pred CCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHh-ccCCCCCCc
Q psy7187 125 GELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMA-KMQLEPFAI 203 (214)
Q Consensus 125 ~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A-~l~~r~~V~ 203 (214)
++=....+.+|..|.+++ -.+|++.....+..-....+. -+..+...|..++++.- .|.-.+..|
T Consensus 168 GQrQf~~le~Y~~yy~~k--~~~s~~e~~~~i~~r~a~~~~------------y~~~~r~~i~~~c~~rgI~lASHDDaT 233 (377)
T COG3454 168 GQRQFANLEKYREYYQGK--RGLSDEEFAEFIEERQALSAR------------YSDPNRQAIAALCRERGIALASHDDAT 233 (377)
T ss_pred CcchhhhHHHHHHHHHhh--cCCCHHHHHHHHHHHHHHHhh------------cccchHHHHHHHHHHcCCceecCCcCc
Confidence 334456788898888764 368886654443332221111 12233445555555543 355678999
Q ss_pred HHHHHHHHh
Q psy7187 204 DSHVTEALR 212 (214)
Q Consensus 204 ~~Dv~~Ai~ 212 (214)
.+||.++..
T Consensus 234 ~~hV~es~~ 242 (377)
T COG3454 234 VEHVAESHG 242 (377)
T ss_pred HHHHHHHHh
Confidence 999999865
Done!