Query psy7187
Match_columns 214
No_of_seqs 129 out of 1352
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 20:23:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f8t_A Predicted ATPase involv 100.0 5.8E-45 2E-49 314.0 14.0 191 1-214 291-483 (506)
2 3f9v_A Minichromosome maintena 100.0 9.2E-40 3.1E-44 293.7 10.4 204 2-214 383-587 (595)
3 1g8p_A Magnesium-chelatase 38 99.8 4.9E-21 1.7E-25 160.9 11.3 184 2-213 136-321 (350)
4 2r44_A Uncharacterized protein 99.8 5.4E-19 1.9E-23 147.9 17.9 184 11-213 110-296 (331)
5 3nbx_X ATPase RAVA; AAA+ ATPas 99.8 3.2E-18 1.1E-22 150.6 13.4 174 10-210 109-282 (500)
6 3k1j_A LON protease, ATP-depen 99.7 3.7E-17 1.3E-21 147.3 6.9 167 2-212 193-373 (604)
7 2bjv_A PSP operon transcriptio 99.1 1.8E-10 6.2E-15 93.0 7.0 156 3-207 93-250 (265)
8 3pfi_A Holliday junction ATP-d 99.1 6.3E-10 2.2E-14 92.7 9.9 75 8-95 104-184 (338)
9 1ojl_A Transcriptional regulat 99.0 5.2E-10 1.8E-14 92.5 7.8 103 3-112 89-193 (304)
10 1hqc_A RUVB; extended AAA-ATPa 98.9 1.2E-07 4E-12 78.3 17.5 144 8-212 88-236 (324)
11 1ny5_A Transcriptional regulat 98.9 3.9E-09 1.3E-13 90.1 8.3 160 2-211 223-384 (387)
12 1r6b_X CLPA protein; AAA+, N-t 98.8 9.7E-09 3.3E-13 94.6 7.0 102 5-109 552-666 (758)
13 2c9o_A RUVB-like 1; hexameric 98.7 4.8E-08 1.7E-12 85.0 10.6 140 12-214 297-437 (456)
14 1um8_A ATP-dependent CLP prote 98.7 6.4E-09 2.2E-13 88.1 4.5 59 4-62 131-203 (376)
15 1ofh_A ATP-dependent HSL prote 98.7 1.3E-08 4.4E-13 83.3 5.2 170 3-212 108-297 (310)
16 3dzd_A Transcriptional regulat 98.7 2.5E-08 8.7E-13 84.5 6.1 145 3-194 215-361 (368)
17 3uk6_A RUVB-like 2; hexameric 98.6 3.2E-07 1.1E-11 77.0 10.5 138 12-214 191-330 (368)
18 4fcw_A Chaperone protein CLPB; 98.5 1.2E-07 4E-12 77.8 4.9 102 6-110 115-230 (311)
19 3pvs_A Replication-associated 98.4 4.6E-07 1.6E-11 78.6 8.4 135 8-212 104-242 (447)
20 3m6a_A ATP-dependent protease 98.4 1.1E-07 3.7E-12 84.6 3.4 151 10-211 175-338 (543)
21 3hws_A ATP-dependent CLP prote 98.4 2.8E-08 9.4E-13 83.8 -1.1 59 4-62 110-182 (363)
22 1in4_A RUVB, holliday junction 98.3 8.1E-06 2.8E-10 68.0 11.6 143 9-212 101-248 (334)
23 4akg_A Glutathione S-transfera 98.3 1.3E-05 4.5E-10 82.1 15.0 141 9-197 696-843 (2695)
24 3syl_A Protein CBBX; photosynt 98.3 1.1E-06 3.9E-11 71.8 6.2 142 5-207 125-279 (309)
25 3pxi_A Negative regulator of g 98.3 1.9E-07 6.6E-12 86.0 1.4 101 6-109 575-675 (758)
26 1qvr_A CLPB protein; coiled co 98.1 8.3E-07 2.8E-11 82.8 3.2 100 8-110 658-771 (854)
27 4akg_A Glutathione S-transfera 98.1 1.1E-05 3.8E-10 82.5 10.7 90 11-112 1337-1434(2695)
28 3vfd_A Spastin; ATPase, microt 98.1 2.5E-05 8.7E-10 66.2 10.5 63 10-93 207-280 (389)
29 3h4m_A Proteasome-activating n 98.1 4.3E-06 1.5E-10 67.6 5.4 36 177-212 221-256 (285)
30 1g41_A Heat shock protein HSLU 98.0 3.9E-06 1.3E-10 72.5 5.1 162 4-211 243-430 (444)
31 2chg_A Replication factor C sm 98.0 9.2E-05 3.2E-09 56.6 11.6 124 9-212 101-224 (226)
32 2qz4_A Paraplegin; AAA+, SPG7, 97.9 6.4E-05 2.2E-09 59.7 9.1 36 177-212 212-247 (262)
33 3d8b_A Fidgetin-like protein 1 97.8 9.8E-05 3.3E-09 62.0 9.4 65 9-94 175-250 (357)
34 1sxj_D Activator 1 41 kDa subu 97.7 0.00025 8.7E-09 58.6 10.8 54 9-87 132-185 (353)
35 3co5_A Putative two-component 97.7 1.1E-05 3.8E-10 58.8 2.0 49 3-63 68-116 (143)
36 3vkg_A Dynein heavy chain, cyt 97.7 0.0004 1.4E-08 72.1 13.2 95 4-110 1364-1470(3245)
37 3vkg_A Dynein heavy chain, cyt 97.6 0.00036 1.2E-08 72.5 12.4 139 9-197 655-803 (3245)
38 3b9p_A CG5977-PA, isoform A; A 97.6 0.00038 1.3E-08 56.4 10.4 65 9-93 112-187 (297)
39 1lv7_A FTSH; alpha/beta domain 97.6 0.0002 6.9E-09 56.9 8.2 36 177-212 215-250 (257)
40 2qp9_X Vacuolar protein sortin 97.5 0.00043 1.5E-08 58.0 9.7 63 10-94 143-216 (355)
41 3eie_A Vacuolar protein sortin 97.5 0.00014 4.8E-09 60.0 6.6 63 10-94 110-183 (322)
42 1njg_A DNA polymerase III subu 97.5 0.0011 3.6E-08 51.1 11.3 124 10-213 126-250 (250)
43 2v1u_A Cell division control p 97.5 0.00026 9E-09 59.0 8.1 137 13-212 133-274 (387)
44 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00074 2.5E-08 62.1 11.5 120 9-159 277-406 (758)
45 3n70_A Transport activator; si 97.4 2.6E-05 9E-10 56.9 0.3 48 3-63 69-116 (145)
46 3u61_B DNA polymerase accessor 97.4 0.00027 9.4E-09 58.0 6.4 64 10-100 105-169 (324)
47 1iqp_A RFCS; clamp loader, ext 97.4 0.0011 3.6E-08 54.1 9.6 54 9-87 109-162 (327)
48 3bos_A Putative DNA replicatio 97.2 0.0014 4.8E-08 50.8 8.5 136 9-213 103-242 (242)
49 1xwi_A SKD1 protein; VPS4B, AA 97.2 0.00093 3.2E-08 55.2 7.6 63 10-94 105-178 (322)
50 3hu3_A Transitional endoplasmi 97.1 0.00041 1.4E-08 60.7 4.2 60 12-94 299-371 (489)
51 2chq_A Replication factor C sm 97.0 0.0032 1.1E-07 51.0 9.2 54 9-87 101-154 (319)
52 2ce7_A Cell division protein F 97.0 0.0024 8.1E-08 55.7 8.5 64 11-98 109-188 (476)
53 2qby_B CDC6 homolog 3, cell di 97.0 0.0023 8E-08 53.4 8.2 132 12-212 135-268 (384)
54 3t15_A Ribulose bisphosphate c 97.0 0.00081 2.8E-08 54.8 5.0 81 10-105 99-194 (293)
55 3pxg_A Negative regulator of g 96.9 0.0025 8.7E-08 55.3 7.9 119 9-162 266-385 (468)
56 2r62_A Cell division protease 96.9 4.6E-05 1.6E-09 60.9 -3.0 36 177-212 216-251 (268)
57 4b4t_I 26S protease regulatory 96.9 0.02 7E-07 49.1 13.0 129 12-212 277-421 (437)
58 1fnn_A CDC6P, cell division co 96.8 0.0035 1.2E-07 52.2 8.0 145 13-212 128-272 (389)
59 2z4s_A Chromosomal replication 96.8 0.0051 1.7E-07 53.0 9.0 133 10-212 194-330 (440)
60 4b4t_M 26S protease regulatory 96.8 0.016 5.5E-07 49.8 11.9 130 11-212 275-420 (434)
61 4b4t_J 26S protease regulatory 96.8 0.019 6.5E-07 48.9 12.1 129 12-212 243-387 (405)
62 2zan_A Vacuolar protein sortin 96.8 0.0059 2E-07 52.6 9.0 62 10-93 227-299 (444)
63 4b4t_L 26S protease subunit RP 96.7 0.044 1.5E-06 47.1 14.0 130 11-212 275-420 (437)
64 4b4t_K 26S protease regulatory 96.7 0.0036 1.2E-07 53.8 7.0 130 12-212 267-412 (428)
65 2dhr_A FTSH; AAA+ protein, hex 96.6 0.0074 2.5E-07 52.9 8.8 62 12-97 125-202 (499)
66 1jr3_A DNA polymerase III subu 96.6 0.036 1.2E-06 45.8 12.4 52 10-86 119-170 (373)
67 2qby_A CDC6 homolog 1, cell di 96.3 0.021 7.1E-07 47.2 9.5 137 11-212 129-270 (386)
68 1sxj_C Activator 1 40 kDa subu 96.3 0.019 6.4E-07 47.4 8.9 58 9-92 109-166 (340)
69 1l8q_A Chromosomal replication 96.3 0.008 2.7E-07 49.2 6.5 66 9-94 97-166 (324)
70 4b4t_H 26S protease regulatory 96.3 0.04 1.4E-06 47.7 10.9 36 177-212 413-448 (467)
71 1ixz_A ATP-dependent metallopr 96.2 0.011 3.7E-07 46.6 6.8 35 177-211 219-253 (254)
72 1qvr_A CLPB protein; coiled co 96.2 0.036 1.2E-06 51.6 11.2 122 11-164 264-394 (854)
73 1sxj_B Activator 1 37 kDa subu 96.1 0.045 1.5E-06 44.1 10.4 53 10-87 107-159 (323)
74 3pxi_A Negative regulator of g 96.0 0.035 1.2E-06 50.9 10.2 119 9-162 266-385 (758)
75 1iy2_A ATP-dependent metallopr 96.0 0.0094 3.2E-07 47.8 5.4 36 177-212 243-278 (278)
76 1d2n_A N-ethylmaleimide-sensit 95.6 0.011 3.8E-07 47.1 4.5 63 9-93 123-196 (272)
77 3cf0_A Transitional endoplasmi 94.2 0.041 1.4E-06 44.6 4.2 65 11-99 109-189 (301)
78 3b0c_T CENP-T, centromere prot 92.6 0.64 2.2E-05 32.0 7.5 65 125-212 6-70 (111)
79 3b0c_W CENP-W, centromere prot 92.4 0.59 2E-05 29.8 6.7 66 126-213 4-69 (76)
80 1ku5_A HPHA, archaeal histon; 92.4 0.79 2.7E-05 28.6 7.2 64 126-212 6-69 (70)
81 1jbk_A CLPB protein; beta barr 92.2 0.026 8.7E-07 41.5 -0.0 54 12-87 117-178 (195)
82 2p65_A Hypothetical protein PF 92.2 0.029 9.8E-07 41.2 0.2 56 11-88 116-180 (187)
83 1sxj_E Activator 1 40 kDa subu 92.0 0.41 1.4E-05 39.1 7.1 58 10-93 134-191 (354)
84 2gno_A DNA polymerase III, gam 91.7 0.11 3.8E-06 42.3 3.3 51 9-85 81-132 (305)
85 1f1e_A Histone fold protein; a 91.1 2.8 9.6E-05 30.5 9.8 65 125-212 81-145 (154)
86 1a5t_A Delta prime, HOLB; zinc 91.0 0.2 6.9E-06 41.1 4.2 58 9-92 107-164 (334)
87 4g92_C HAPE; transcription fac 90.9 2.9 9.9E-05 29.0 9.7 68 123-212 38-105 (119)
88 1sxj_A Activator 1 95 kDa subu 90.4 2.6 9E-05 36.6 11.0 28 9-36 147-177 (516)
89 1taf_A TFIID TBP associated fa 90.4 1.2 4.1E-05 27.8 6.4 33 181-213 33-65 (68)
90 2yfw_B Histone H4, H4; cell cy 90.3 0.84 2.9E-05 30.9 6.1 64 126-212 29-92 (103)
91 1b67_A Protein (histone HMFA); 89.7 2.4 8.1E-05 26.1 7.6 65 126-213 2-66 (68)
92 1tzy_D Histone H4-VI; histone- 89.0 0.66 2.3E-05 31.4 4.8 63 127-212 30-92 (103)
93 1ypw_A Transitional endoplasmi 88.9 0.031 1E-06 51.8 -2.7 59 12-93 572-646 (806)
94 1h3o_B Transcription initiatio 88.6 3.3 0.00011 26.4 7.6 62 126-211 5-68 (76)
95 1n1j_B NF-YC; histone-like PAI 86.9 2.5 8.6E-05 28.2 6.6 68 123-212 16-83 (97)
96 1taf_B TFIID TBP associated fa 86.2 4.5 0.00015 25.3 9.1 67 124-213 4-70 (70)
97 1w5s_A Origin recognition comp 85.3 4.8 0.00016 33.2 9.1 33 179-211 258-290 (412)
98 3te6_A Regulatory protein SIR3 85.3 0.45 1.5E-05 39.1 2.6 77 11-107 133-209 (318)
99 1n1j_A NF-YB; histone-like PAI 85.2 6.1 0.00021 25.9 8.0 67 124-212 6-73 (93)
100 1id3_B Histone H4; nucleosome 84.9 3.5 0.00012 27.8 6.5 64 126-212 28-91 (102)
101 1jfi_B DR1 protein, transcript 84.8 9.5 0.00033 28.4 9.4 68 123-212 12-79 (179)
102 3v9r_A MHF1, uncharacterized p 84.5 3.6 0.00012 27.1 6.2 48 145-212 31-78 (90)
103 1jr3_D DNA polymerase III, del 84.4 13 0.00045 30.0 11.2 28 9-36 75-103 (343)
104 2nqb_D Histone H2B; nucleosome 84.4 3.9 0.00013 28.5 6.6 60 134-213 37-98 (123)
105 1tzy_B Histone H2B; histone-fo 83.0 4.9 0.00017 28.1 6.7 59 135-213 41-101 (126)
106 1f1e_A Histone fold protein; a 82.5 4.9 0.00017 29.2 6.8 65 126-212 4-68 (154)
107 2hue_C Histone H4; mini beta s 82.5 3 0.0001 27.0 5.2 65 125-212 9-73 (84)
108 4dra_A Centromere protein S; D 80.2 5.2 0.00018 27.5 6.0 48 145-212 46-93 (113)
109 2ly8_A Budding yeast chaperone 79.6 2.2 7.5E-05 29.8 3.9 30 183-212 81-110 (121)
110 2byk_B Chrac-14; nucleosome sl 78.5 8.8 0.0003 26.9 7.0 67 125-212 8-74 (128)
111 3b0b_B CENP-S, centromere prot 78.3 8.2 0.00028 26.2 6.4 48 145-212 38-85 (107)
112 2jss_A Chimera of histone H2B. 77.9 13 0.00044 27.9 8.2 51 143-213 16-68 (192)
113 3cf2_A TER ATPase, transitiona 77.0 2.9 9.8E-05 38.7 5.1 61 11-94 298-371 (806)
114 1jfi_A Transcription regulator 76.3 5.2 0.00018 26.7 5.0 68 123-212 8-75 (98)
115 3kw6_A 26S protease regulatory 73.3 5 0.00017 25.1 4.2 37 176-212 35-71 (78)
116 2nqb_C Histone H2A; nucleosome 70.1 20 0.00068 24.9 6.9 65 126-212 23-87 (123)
117 3vh5_A CENP-S; histone fold, c 69.4 11 0.00038 26.8 5.5 48 145-212 38-85 (140)
118 2f8n_G Core histone macro-H2A. 69.2 21 0.00073 24.6 6.9 65 126-212 22-86 (120)
119 1tzy_A Histone H2A-IV; histone 67.7 23 0.00078 24.8 6.9 65 126-212 25-89 (129)
120 2l5a_A Histone H3-like centrom 67.5 16 0.00054 28.4 6.4 30 183-212 195-224 (235)
121 2f8n_K Histone H2A type 1; nuc 67.2 18 0.00063 26.0 6.4 65 126-212 44-108 (149)
122 2byk_A Chrac-16; nucleosome sl 66.9 8.2 0.00028 27.6 4.5 66 125-212 18-84 (140)
123 3aji_B S6C, proteasome (prosom 63.2 15 0.00053 23.0 5.0 37 176-212 33-69 (83)
124 3cf2_A TER ATPase, transitiona 62.2 2.9 9.9E-05 38.7 1.7 60 11-93 571-646 (806)
125 1f66_C Histone H2A.Z; nucleoso 59.5 33 0.0011 24.0 6.4 66 126-212 27-92 (128)
126 1id3_C Histone H2A.1; nucleoso 58.4 22 0.00075 25.0 5.4 65 126-212 25-89 (131)
127 4dra_E Centromere protein X; D 58.3 34 0.0012 22.0 7.4 69 123-211 9-77 (84)
128 2dzn_B 26S protease regulatory 58.2 15 0.00051 23.1 4.2 37 176-212 30-66 (82)
129 3vlf_B 26S protease regulatory 58.0 17 0.00057 23.3 4.5 36 177-212 34-69 (88)
130 1ypw_A Transitional endoplasmi 56.7 5.6 0.00019 36.7 2.6 60 10-92 297-369 (806)
131 3b0b_C CENP-X, centromere prot 53.5 41 0.0014 21.5 7.5 68 124-211 6-73 (81)
132 2krk_A 26S protease regulatory 51.9 22 0.00074 22.7 4.2 36 177-212 44-79 (86)
133 3od8_A Poly [ADP-ribose] polym 49.7 7.3 0.00025 26.9 1.7 25 16-40 91-115 (116)
134 2kjq_A DNAA-related protein; s 49.5 12 0.00043 26.4 3.0 27 10-36 83-109 (149)
135 2orw_A Thymidine kinase; TMTK, 48.1 12 0.0004 27.6 2.7 28 11-38 77-104 (184)
136 2x8a_A Nuclear valosin-contain 48.0 21 0.00072 28.0 4.4 66 11-100 104-182 (274)
137 3fes_A ATP-dependent CLP endop 47.5 23 0.0008 24.8 4.2 35 176-211 80-114 (145)
138 2jss_A Chimera of histone H2B. 46.4 80 0.0027 23.5 7.2 66 126-212 105-170 (192)
139 2l09_A ASR4154 protein; proto- 44.1 39 0.0013 20.4 4.1 46 147-212 5-50 (62)
140 3fh2_A Probable ATP-dependent 43.1 30 0.001 24.2 4.2 35 176-211 80-114 (146)
141 1k6k_A ATP-dependent CLP prote 41.9 33 0.0011 23.6 4.3 35 176-211 78-112 (143)
142 1khy_A CLPB protein; alpha hel 37.9 33 0.0011 23.7 3.8 35 176-211 81-115 (148)
143 2y1q_A CLPC N-domain, negative 36.4 44 0.0015 23.2 4.2 35 176-211 78-112 (150)
144 2iut_A DNA translocase FTSK; n 35.0 32 0.0011 30.5 3.8 40 13-63 346-389 (574)
145 3zri_A CLPB protein, CLPV; cha 33.0 55 0.0019 23.8 4.3 35 176-211 97-132 (171)
146 2r2a_A Uncharacterized protein 32.6 14 0.00049 27.7 1.1 60 11-94 88-152 (199)
147 1f6v_A DNA transposition prote 31.6 19 0.00067 23.6 1.4 32 179-211 45-76 (91)
148 3ec2_A DNA replication protein 30.8 42 0.0014 23.9 3.4 28 9-36 99-128 (180)
149 2l8b_A Protein TRAI, DNA helic 30.7 26 0.00088 26.3 2.1 33 3-35 114-146 (189)
150 2dmj_A Poly (ADP-ribose) polym 29.8 26 0.00088 23.5 1.9 26 15-40 77-102 (106)
151 2kru_A Light-independent proto 28.6 62 0.0021 19.6 3.2 34 177-212 18-51 (63)
152 3cuq_B Vacuolar protein-sortin 27.4 53 0.0018 25.1 3.5 23 192-214 104-126 (218)
153 1u5t_B Defective in vacuolar p 26.9 34 0.0012 25.0 2.2 17 198-214 56-72 (169)
154 2jn4_A Hypothetical protein FI 26.1 38 0.0013 21.9 2.0 19 3-21 56-74 (87)
155 3zri_A CLPB protein, CLPV; cha 25.3 55 0.0019 23.8 3.2 33 178-211 25-57 (171)
156 1hyw_A GPW, head-TO-tail joini 24.4 1.2E+02 0.0041 18.5 4.1 28 24-51 4-36 (68)
157 3u12_A USP37 protein; structur 22.2 25 0.00086 24.9 0.7 35 6-40 90-124 (141)
158 1wwi_A Hypothetical protein TT 21.6 46 0.0016 23.8 1.9 25 183-207 36-60 (148)
159 1u5t_A Appears to BE functiona 21.4 71 0.0024 24.7 3.2 27 187-213 114-140 (233)
160 1qzm_A ATP-dependent protease 20.8 1.2E+02 0.004 19.8 3.7 14 146-159 32-45 (94)
161 1ye8_A Protein THEP1, hypothet 20.5 57 0.0019 23.6 2.4 29 8-36 97-128 (178)
No 1
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=100.00 E-value=5.8e-45 Score=313.99 Aligned_cols=191 Identities=32% Similarity=0.497 Sum_probs=157.9
Q ss_pred CCcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCC
Q psy7187 1 MEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMP 80 (214)
Q Consensus 1 ~~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~ 80 (214)
++||++++|||||||+|||++|+++++++|+|+||+|+|+|. |. ++|++|+||||+|||+ +|+++++.++++||+
T Consensus 291 ~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~--G~--~lparf~VIAA~NP~~-~yd~~~s~~~~~Lp~ 365 (506)
T 3f8t_A 291 LRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD--GI--ALNARCAVLAAINPGE-QWPSDPPIARIDLDQ 365 (506)
T ss_dssp EEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEET--TE--EEECCCEEEEEECCCC---CCSCGGGGCCSCH
T ss_pred cCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEEC--CE--EcCCCeEEEEEeCccc-ccCCCCCccccCCCh
Confidence 379999999999999999999999999999999999999996 76 9999999999999998 777666568899999
Q ss_pred CCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhH-hccCCCCCHHHHHHHHHHH
Q psy7187 81 TILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCR-MRCGPRLTHEAGEKLKNRY 159 (214)
Q Consensus 81 ~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar-~~~~p~ls~ea~~~i~~~y 159 (214)
++||||||++.+.|.++.+.|.+ .....++.+.+++|+.||| .++.|.+++++.++|.++|
T Consensus 366 alLDRFDLi~i~~d~pd~e~d~e------------------~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y 427 (506)
T 3f8t_A 366 DFLSHFDLIAFLGVDPRPGEPEE------------------QDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWY 427 (506)
T ss_dssp HHHTTCSEEEETTC--------------------------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHH
T ss_pred HHhhheeeEEEecCCCChhHhhc------------------ccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHH
Confidence 99999999999999998776631 1235689999999999999 6778999999999999999
Q ss_pred HHHhcCCCcC-CCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhcC
Q psy7187 160 VLMRNGSKED-GEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRLF 214 (214)
Q Consensus 160 ~~~r~~~~~~-~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~lf 214 (214)
..+|...... .......++|+|++++|+|+|+|+|+|++|++|+++||.+|++||
T Consensus 428 ~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~ 483 (506)
T 3f8t_A 428 ETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELV 483 (506)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 9999731100 011235789999999999999999999999999999999999885
No 2
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=100.00 E-value=9.2e-40 Score=293.67 Aligned_cols=204 Identities=49% Similarity=0.731 Sum_probs=186.0
Q ss_pred CcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcc-cccccCCC
Q psy7187 2 EGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKG-EQNIDFMP 80 (214)
Q Consensus 2 ~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~-~~~~~l~~ 80 (214)
+||.+.+|++|||||||+++++++++++|+++||+|++++.++|...++|+++.||||+||.+|+|+..++ .+|+.|++
T Consensus 383 ~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~ 462 (595)
T 3f9v_A 383 EAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPP 462 (595)
T ss_dssp EECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCS
T ss_pred cCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999998877 88999999
Q ss_pred CCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHH
Q psy7187 81 TILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYV 160 (214)
Q Consensus 81 ~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~ 160 (214)
+|+||||+++.+.+.++.+ +..|++|++..+... .....++.+.+++|+.||++.+.|.+++++.++|.++|.
T Consensus 463 aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~------~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~ 535 (595)
T 3f9v_A 463 TILSRFDLIFILKDQPGEQ-DRELANYILDVHSGK------STKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFV 535 (595)
T ss_dssp SSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCC------SSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHT
T ss_pred HHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhcc------ccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999888 999999998866431 245678999999999999998899999999999999999
Q ss_pred HHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhcC
Q psy7187 161 LMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRLF 214 (214)
Q Consensus 161 ~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~lf 214 (214)
.+|+..... .....++|+|++++++|+|+|+|++++++.|+.+||.+|++|+
T Consensus 536 ~lR~~~~~~--~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 536 EMRKKSSET--PDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp TSSCSCCBC--SSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHH
T ss_pred HHHHhhccC--CCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 998876532 1124789999999999999999999999999999999999874
No 3
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.85 E-value=4.9e-21 Score=160.87 Aligned_cols=184 Identities=14% Similarity=0.158 Sum_probs=143.7
Q ss_pred CcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCC
Q psy7187 2 EGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPT 81 (214)
Q Consensus 2 ~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~ 81 (214)
.+|.+..|++||+||||++.++.+.++.|+++|++|.+.+.+.|.....|.++.+++|+||+.+. ++++
T Consensus 136 ~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~-----------l~~~ 204 (350)
T 1g8p_A 136 EPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGD-----------LRPQ 204 (350)
T ss_dssp ECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCC-----------CCHH
T ss_pred cCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCC-----------CCHH
Confidence 36778889999999999999999999999999999999999999999999999999999997654 8899
Q ss_pred CCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccC-CCCCHHHHHHHHHHHH
Q psy7187 82 ILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCG-PRLTHEAGEKLKNRYV 160 (214)
Q Consensus 82 lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~-p~ls~ea~~~i~~~y~ 160 (214)
|++||++.+.+...++.+....|..+.+....... . .......+...+++++.+++.... ..+++++.++|.+++.
T Consensus 205 L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~-~--~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~ 281 (350)
T 1g8p_A 205 LLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPK-A--FLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCI 281 (350)
T ss_dssp HHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHH-H--HHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHH
T ss_pred HHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCch-h--hccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 99999998888766565555455555443211000 0 000001134467778877765332 3789999999998875
Q ss_pred HHhcCCCcCCCCcccccc-CHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 161 LMRNGSKEDGEKKLNIPI-TVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 161 ~~r~~~~~~~~~~~~~~~-s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
. .+. ++|.+..+++.|.++|.+++++.|+.+|+.+|+.+
T Consensus 282 ~--------------~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 282 A--------------LGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp H--------------SSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred H--------------hCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 4 233 78999999999999999999999999999999864
No 4
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.82 E-value=5.4e-19 Score=147.85 Aligned_cols=184 Identities=14% Similarity=0.134 Sum_probs=136.3
Q ss_pred CceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccEEE
Q psy7187 11 GGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDMIF 90 (214)
Q Consensus 11 ~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL~~ 90 (214)
+||+||||++.++++.++.|+++|+++.+++ .|..+.+|.++.|+||+||+... ....++++|+|||++.+
T Consensus 110 ~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~--~g~~~~~~~~~~viat~np~~~~-------~~~~l~~~l~~Rf~~~i 180 (331)
T 2r44_A 110 SNFILADEVNRSPAKVQSALLECMQEKQVTI--GDTTYPLDNPFLVLATQNPVEQE-------GTYPLPEAQVDRFMMKI 180 (331)
T ss_dssp SSEEEEETGGGSCHHHHHHHHHHHHHSEEEE--TTEEEECCSSCEEEEEECTTCCS-------CCCCCCHHHHTTSSEEE
T ss_pred ccEEEEEccccCCHHHHHHHHHHHhcCceee--CCEEEECCCCEEEEEecCCCccc-------CcccCCHHHHhheeEEE
Confidence 5899999999999999999999999999998 78899999999999999998421 12248999999999877
Q ss_pred EecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCC
Q psy7187 91 IIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDG 170 (214)
Q Consensus 91 ~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~ 170 (214)
.+..+ +.+... .++..+...... ......++.+.+......++. ..+++++.+++.+.+..+|.......
T Consensus 181 ~i~~p-~~~~~~----~il~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~---v~~~~~~~~~i~~~~~~~r~~~~~~~ 250 (331)
T 2r44_A 181 HLTYL-DKESEL----EVMRRVSNMNFN--YQVQKIVSKNDVLEIRNEINK---VTISESLEKYIIELVFATRFPAEYGL 250 (331)
T ss_dssp ECCCC-CHHHHH----HHHHHHHCTTCC--CCCCCCSCHHHHHHHHHHHHT---CBCCHHHHHHHHHHHHHHHSGGGGTC
T ss_pred EcCCC-CHHHHH----HHHHhccccCcc--hhccccCCHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHHhccccccc
Confidence 76543 333322 344433322111 112344566666666555543 36899999999999988776531000
Q ss_pred ---CCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 171 ---EKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 171 ---~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
......++|+|.+..++++|+++|++++++.|+++||.+|+..
T Consensus 251 ~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~ 296 (331)
T 2r44_A 251 EAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYD 296 (331)
T ss_dssp HHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred cccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 0001246799999999999999999999999999999998753
No 5
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.77 E-value=3.2e-18 Score=150.56 Aligned_cols=174 Identities=10% Similarity=0.052 Sum_probs=126.8
Q ss_pred CCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccEE
Q psy7187 10 DGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDMI 89 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL~ 89 (214)
..+|+|||||+++++++++.|+++|+++.+++ .|..+.+|.+| +|+|+||... ...+..+++|||++.
T Consensus 109 ~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i--~G~~~~~~~~~-iI~ATN~lpe---------~~~~~~aLldRF~~~ 176 (500)
T 3nbx_X 109 EAEIVFLDEIWKAGPAILNTLLTAINERQFRN--GAHVEKIPMRL-LVAASNELPE---------ADSSLEALYDRMLIR 176 (500)
T ss_dssp GCSEEEEESGGGCCHHHHHHHHHHHHSSEEEC--SSSEEECCCCE-EEEEESSCCC---------TTCTTHHHHTTCCEE
T ss_pred cceeeeHHhHhhhcHHHHHHHHHHHHHHhccC--CCCcCCcchhh-hhhccccCCC---------ccccHHHHHHHHHHH
Confidence 34589999999999999999999999999998 88899999997 5667787421 112557999999776
Q ss_pred EEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcC
Q psy7187 90 FIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKED 169 (214)
Q Consensus 90 ~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~ 169 (214)
+.+..+...+... .|+..+....... ......++.+.+..+...++. ..+++++.+++.+.+..+|....
T Consensus 177 i~v~~p~~~ee~~----~IL~~~~~~~~~~-~~~~~~~~~e~l~~~~~~~~~---v~v~d~v~e~i~~l~~~lr~~r~-- 246 (500)
T 3nbx_X 177 LWLDKVQDKANFR----SMLTSQQDENDNP-VPDALQVTDEEYERWQKEIGE---ITLPDHVFELIFMLRQQLDKLPD-- 246 (500)
T ss_dssp EECCSCCCHHHHH----HHHTCCCCTTSCC-SCTTTSBCHHHHHHHHHHHTT---CBCCHHHHHHHHHHHHHHHHCSS--
T ss_pred HHHHHhhhhhhHH----HHHhcccccCCCC-CCccceecHHHHHHHHhcCCc---ccCchHHHHHHHHHHHHhhcCCC--
Confidence 7664333222222 2333221111010 112345678888888877765 36899999999998876665442
Q ss_pred CCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHH
Q psy7187 170 GEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEA 210 (214)
Q Consensus 170 ~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~A 210 (214)
..++|+|.+++++++|+|+|.+++|+.|+++||..|
T Consensus 247 -----~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~~a 282 (500)
T 3nbx_X 247 -----APYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLILL 282 (500)
T ss_dssp -----SCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGGGG
T ss_pred -----CCccchhHHHHHHHHHHHHHhhcCCccccchHHHHH
Confidence 246799999999999999999999999999999843
No 6
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.67 E-value=3.7e-17 Score=147.28 Aligned_cols=167 Identities=22% Similarity=0.266 Sum_probs=123.5
Q ss_pred CcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecce----------EEEEeCceEEEEeecCCCCCCCCCc
Q psy7187 2 EGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGI----------TTTLNSRCSVLAAANSVFGRWDDTK 71 (214)
Q Consensus 2 ~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~----------~~~lpa~~~viaa~Np~~g~~~~~~ 71 (214)
++|.+..|++|+|||||++.+++..++.|+++|++|++++. |. ...+|+++.||+|+||..
T Consensus 193 ~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~--g~~~~~~~~~l~~~~~p~~~~vI~atn~~~------- 263 (604)
T 3k1j_A 193 EPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPIT--GQSEMSSGAMVRTEPVPCDFVLVAAGNLDT------- 263 (604)
T ss_dssp ECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCB--CSCTTSGGGGCBCSCEECCCEEEEEECHHH-------
T ss_pred cCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEec--ccccccccccCCCCccceeEEEEEecCHHH-------
Confidence 57899999999999999999999999999999999999885 33 567899999999999951
Q ss_pred ccccccCCCCCCCccc---EEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhH-hccCCCC
Q psy7187 72 GEQNIDFMPTILSRFD---MIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCR-MRCGPRL 147 (214)
Q Consensus 72 ~~~~~~l~~~lldRFD---L~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar-~~~~p~l 147 (214)
...++++|++||+ +.+.+.+.. +.......+++... ...++ ....|.+
T Consensus 264 ---~~~l~~~l~~R~~v~~i~i~l~~~~--~~~~~~~~~~l~~~-----------------------~~~~~~~~~~~~l 315 (604)
T 3k1j_A 264 ---VDKMHPALRSRIRGYGYEVYMRTTM--PDTIENRRKLVQFV-----------------------AQEVKRDGKIPHF 315 (604)
T ss_dssp ---HHHSCHHHHHHHHHHSEEEECCSEE--ECCHHHHHHHHHHH-----------------------HHHHHHHCSSCCB
T ss_pred ---HhhcCHHHHHHhhccceEeeccccc--cCCHHHHHHHHHHH-----------------------HHHHhhccCcccC
Confidence 1138899999998 445432211 11122222222211 11111 1124679
Q ss_pred CHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 148 THEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 148 s~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
++++...|.++|... .+ ....+++++|.+..++|.|.++|+.++++.|+.+||.+|+.
T Consensus 316 s~eAl~~Li~~~~r~--~g-----~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~ 373 (604)
T 3k1j_A 316 TKEAVEEIVREAQKR--AG-----RKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVK 373 (604)
T ss_dssp BHHHHHHHHHHHHHT--TC-----STTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhh--hc-----cccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHH
Confidence 999999999988532 22 11235678999999999999999999999999999999975
No 7
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.08 E-value=1.8e-10 Score=92.96 Aligned_cols=156 Identities=17% Similarity=0.190 Sum_probs=96.2
Q ss_pred cceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCC
Q psy7187 3 GGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTI 82 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~l 82 (214)
+|.+..|++|++||||++.++.+.+..|++.|+++.+ .+.|.....+.++.||+|+|+..... .....+.+.|
T Consensus 93 ~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~--~~~g~~~~~~~~~~iI~atn~~~~~~-----~~~~~~~~~L 165 (265)
T 2bjv_A 93 PGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGEL--ERVGGSQPLQVNVRLVCATNADLPAM-----VNEGTFRADL 165 (265)
T ss_dssp CCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEE--CCCCC--CEECCCEEEEEESSCHHHH-----HHHTSSCHHH
T ss_pred cchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCe--ecCCCcccccCCeEEEEecCcCHHHH-----HHcCCccHHH
Confidence 4566678999999999999999999999999999975 46777777889999999999951100 0112377899
Q ss_pred CCcccE-EEEecCCCCcccc-HHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHH
Q psy7187 83 LSRFDM-IFIIKDEHDETRD-ITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYV 160 (214)
Q Consensus 83 ldRFDL-~~~~~~~~~~~~d-~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~ 160 (214)
++||+. .+.+.+..+...| ..++++.+....... .....|.+++++.+.|..+.
T Consensus 166 ~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~-----------------------~~~~~~~~~~~a~~~L~~~~- 221 (265)
T 2bjv_A 166 LDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREI-----------------------KLPLFPGFTERARETLLNYR- 221 (265)
T ss_dssp HHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHT-----------------------TCSSCCCBCHHHHHHHHHSC-
T ss_pred HHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHh-----------------------CCCcccCcCHHHHHHHHhCC-
Confidence 999974 3333322221111 223333333221110 00011367888887775421
Q ss_pred HHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHH
Q psy7187 161 LMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHV 207 (214)
Q Consensus 161 ~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv 207 (214)
.+-.+|.+..+++-+-..+. ...|+.+|+
T Consensus 222 ---------------~~gn~reL~~~l~~~~~~~~---~~~i~~~~l 250 (265)
T 2bjv_A 222 ---------------WPGNIRELKNVVERSVYRHG---TSDYPLDDI 250 (265)
T ss_dssp ---------------CTTHHHHHHHHHHHHHHHHC---CSSSCBCCC
T ss_pred ---------------CCCCHHHHHHHHHHHHHhCC---CCcCcHHHc
Confidence 12357888888777666554 345665554
No 8
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.06 E-value=6.3e-10 Score=92.74 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=57.3
Q ss_pred ccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecc------eEEEEeCceEEEEeecCCCCCCCCCcccccccCCCC
Q psy7187 8 LADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAG------ITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPT 81 (214)
Q Consensus 8 la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g------~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~ 81 (214)
++++|++||||++.++.+.+..|+.+|+++.+.+..++ ....+| ++.+|+|+|+.. .++++
T Consensus 104 ~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~atn~~~------------~l~~~ 170 (338)
T 3pfi_A 104 LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP-KFTLIGATTRAG------------MLSNP 170 (338)
T ss_dssp CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC-CCEEEEEESCGG------------GSCHH
T ss_pred ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC-CeEEEEeCCCcc------------ccCHH
Confidence 57899999999999999999999999999987764322 223345 689999999842 27789
Q ss_pred CCCcccEEEEecCC
Q psy7187 82 ILSRFDMIFIIKDE 95 (214)
Q Consensus 82 lldRFDL~~~~~~~ 95 (214)
|++|||.++.+...
T Consensus 171 L~~R~~~~i~l~~~ 184 (338)
T 3pfi_A 171 LRDRFGMQFRLEFY 184 (338)
T ss_dssp HHTTCSEEEECCCC
T ss_pred HHhhcCEEeeCCCc
Confidence 99999988877554
No 9
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.02 E-value=5.2e-10 Score=92.49 Aligned_cols=103 Identities=19% Similarity=0.352 Sum_probs=72.5
Q ss_pred cceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCC
Q psy7187 3 GGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTI 82 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~l 82 (214)
+|.+..|++|++||||++.++.+.+..|+.+|+++.+ .+.|.....+.++.||+|+|+.-.. ......+...|
T Consensus 89 ~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~--~~~g~~~~~~~~~riI~atn~~l~~-----~v~~g~fr~~L 161 (304)
T 1ojl_A 89 EGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREV--QRVGSNQTISVDVRLIAATHRDLAE-----EVSAGRFRQDL 161 (304)
T ss_dssp CCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBC--CBTTBCCCCBCCCEEEEEESSCHHH-----HHHHTSSCHHH
T ss_pred cCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEe--eecCCcccccCCeEEEEecCccHHH-----HHHhCCcHHHH
Confidence 5667789999999999999999999999999999876 4678778889999999999985100 01122367889
Q ss_pred CCcccEE-EEecCCCCcccc-HHHHHHHHHHH
Q psy7187 83 LSRFDMI-FIIKDEHDETRD-ITLAKHIMKVH 112 (214)
Q Consensus 83 ldRFDL~-~~~~~~~~~~~d-~~ia~~il~~~ 112 (214)
++||+.+ +.+++..+...| ..++.+.+...
T Consensus 162 ~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~ 193 (304)
T 1ojl_A 162 YYRLNVVAIEMPSLRQRREDIPLLADHFLRRF 193 (304)
T ss_dssp HHHHSSEEEECCCSGGGGGGHHHHHHHHHHHH
T ss_pred HhhcCeeEEeccCHHHhHhhHHHHHHHHHHHH
Confidence 9999743 333332222222 34555555443
No 10
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.90 E-value=1.2e-07 Score=78.26 Aligned_cols=144 Identities=22% Similarity=0.291 Sum_probs=94.6
Q ss_pred ccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecc-----eEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCC
Q psy7187 8 LADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAG-----ITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTI 82 (214)
Q Consensus 8 la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g-----~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~l 82 (214)
++++|++||||++.++...+..|+..|+++.+.+.-+. ....-+.++.+|+++|.. +. +.++|
T Consensus 88 ~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~-~~-----------~~~~l 155 (324)
T 1hqc_A 88 LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRP-GL-----------ITAPL 155 (324)
T ss_dssp CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCC-SS-----------CSCST
T ss_pred ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCc-cc-----------CCHHH
Confidence 57899999999999999999999999999987763211 112223468899999875 22 77899
Q ss_pred CCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHH
Q psy7187 83 LSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLM 162 (214)
Q Consensus 83 ldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~ 162 (214)
++||+.++.+...+ .+ .+ ..++.... +. ....+++++.+.|..+.
T Consensus 156 ~~R~~~~i~l~~~~-~~---e~-~~~l~~~~--------------------------~~-~~~~~~~~~~~~l~~~~--- 200 (324)
T 1hqc_A 156 LSRFGIVEHLEYYT-PE---EL-AQGVMRDA--------------------------RL-LGVRITEEAALEIGRRS--- 200 (324)
T ss_dssp TTTCSCEEECCCCC-HH---HH-HHHHHHHH--------------------------HT-TTCCCCHHHHHHHHHHS---
T ss_pred HhcccEEEecCCCC-HH---HH-HHHHHHHH--------------------------Hh-cCCCCCHHHHHHHHHHc---
Confidence 99998777665432 21 11 12222111 11 12346777766665431
Q ss_pred hcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 163 RNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 163 r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
+=.+|.+..+++.+...|.+...+.|+.+|+..++.
T Consensus 201 --------------~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~ 236 (324)
T 1hqc_A 201 --------------RGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALA 236 (324)
T ss_dssp --------------CSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHH
T ss_pred --------------cCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 114677777777777777777777788887776653
No 11
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.88 E-value=3.9e-09 Score=90.06 Aligned_cols=160 Identities=21% Similarity=0.237 Sum_probs=103.9
Q ss_pred CcceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCC
Q psy7187 2 EGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPT 81 (214)
Q Consensus 2 ~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~ 81 (214)
.+|.+..|+||++|+||++.|+.+.+..|+++|++|+++ +.|.....+.++.||+|+|..-.. -.....+...
T Consensus 223 ~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~--~~g~~~~~~~~~rii~at~~~l~~-----~~~~g~fr~d 295 (387)
T 1ny5_A 223 KEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFY--RLGGRKEIEVNVRILAATNRNIKE-----LVKEGKFRED 295 (387)
T ss_dssp BCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEEC--CBTCCSBEECCCEEEEEESSCHHH-----HHHTTSSCHH
T ss_pred cCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEE--eCCCCceeeccEEEEEeCCCCHHH-----HHHcCCccHH
Confidence 368888999999999999999999999999999999865 577777889999999999984100 0111225566
Q ss_pred CCCcccEEEE-ecCCCCc-cccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHH
Q psy7187 82 ILSRFDMIFI-IKDEHDE-TRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRY 159 (214)
Q Consensus 82 lldRFDL~~~-~~~~~~~-~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y 159 (214)
|+.|+..+-+ ++.-.+. +.-..++++.++........ -.+.+++++.+.+..|-
T Consensus 296 l~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~------------------------~~~~~~~~a~~~l~~~~ 351 (387)
T 1ny5_A 296 LYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAK------------------------EVEGFTKSAQELLLSYP 351 (387)
T ss_dssp HHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTC------------------------CCCEECHHHHHHHHHSC
T ss_pred HHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCC------------------------CCCCCCHHHHHHHHhCC
Confidence 6666653322 2221121 11224445544432221100 02357888888876531
Q ss_pred HHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHH
Q psy7187 160 VLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEAL 211 (214)
Q Consensus 160 ~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai 211 (214)
-+=.+|.|+.+++-+-..++ ...|+.+|+-..+
T Consensus 352 ----------------wpGNvreL~~~i~~~~~~~~---~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 352 ----------------WYGNVRELKNVIERAVLFSE---GKFIDRGELSCLV 384 (387)
T ss_dssp ----------------CTTHHHHHHHHHHHHHHHCC---SSEECHHHHHHHC
T ss_pred ----------------CCcHHHHHHHHHHHHHHhCC---CCcCcHHHCcHhh
Confidence 12357889988887776664 4678888886543
No 12
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.76 E-value=9.7e-09 Score=94.60 Aligned_cols=102 Identities=16% Similarity=0.221 Sum_probs=70.2
Q ss_pred eeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCC--------CCCCCCc--c-c
Q psy7187 5 AMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVF--------GRWDDTK--G-E 73 (214)
Q Consensus 5 ~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~--------g~~~~~~--~-~ 73 (214)
++..+++||+|+||++++++++++.|+++|++|.++.. .|....+ .++.||+|+|+.. |+..... . .
T Consensus 552 ~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~-~g~~~~~-~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~ 629 (758)
T 1r6b_X 552 AVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDN-NGRKADF-RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAM 629 (758)
T ss_dssp HHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEET-TTEEEEC-TTEEEEEEECSSCC-----------------CH
T ss_pred HHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcC-CCCEEec-CCeEEEEecCcchhhhhhcccCccccchHHHHH
Confidence 34567899999999999999999999999999999874 4666665 6899999999942 2211100 0 1
Q ss_pred c--cccCCCCCCCcccEEEEecCCCCccccHHHHHHHH
Q psy7187 74 Q--NIDFMPTILSRFDMIFIIKDEHDETRDITLAKHIM 109 (214)
Q Consensus 74 ~--~~~l~~~lldRFDL~~~~~~~~~~~~d~~ia~~il 109 (214)
+ ...++++|++|||.++.+. +.+.+.-..|.++.+
T Consensus 630 ~~~~~~~~~~l~~R~~~~i~~~-~l~~~~~~~i~~~~l 666 (758)
T 1r6b_X 630 EEIKKIFTPEFRNRLDNIIWFD-HLSTDVIHQVVDKFI 666 (758)
T ss_dssp HHHHHHSCHHHHTTCSEEEECC-CCCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHhhCCcceeeC-CCCHHHHHHHHHHHH
Confidence 1 1268899999999886554 444443334444433
No 13
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.75 E-value=4.8e-08 Score=84.96 Aligned_cols=140 Identities=19% Similarity=0.171 Sum_probs=91.5
Q ss_pred ceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcc-cccccCCCCCCCcccEEE
Q psy7187 12 GVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKG-EQNIDFMPTILSRFDMIF 90 (214)
Q Consensus 12 Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~-~~~~~l~~~lldRFDL~~ 90 (214)
||++|||++.|+.+..++|+.+||+. |..+.|+++ ||.-+.-..... .....+++.++|||-+ +
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~-------------~~~~~il~t-n~~~~~i~~~~~~~~~~~l~~~i~sR~~~-~ 361 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESS-------------IAPIVIFAS-NRGNCVIRGTEDITSPHGIPLDLLDRVMI-I 361 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTST-------------TCCEEEEEE-CCSEEECBTTSSCEEETTCCHHHHTTEEE-E
T ss_pred eEEEEechhhcCHHHHHHHHHHhhcc-------------CCCEEEEec-CCccccccccccccccccCChhHHhhcce-e
Confidence 79999999999999999999999964 233333344 552000000000 1233588899999965 3
Q ss_pred EecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCC
Q psy7187 91 IIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDG 170 (214)
Q Consensus 91 ~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~ 170 (214)
. ..+.+.+ .+.+. +..+.. . ....+++++..+|.++...
T Consensus 362 ~-~~~~~~~---e~~~i-L~~~~~--------------------------~-~~~~~~~~~~~~i~~~a~~--------- 400 (456)
T 2c9o_A 362 R-TMLYTPQ---EMKQI-IKIRAQ--------------------------T-EGINISEEALNHLGEIGTK--------- 400 (456)
T ss_dssp E-CCCCCHH---HHHHH-HHHHHH--------------------------H-HTCCBCHHHHHHHHHHHHH---------
T ss_pred e-CCCCCHH---HHHHH-HHHHHH--------------------------H-hCCCCCHHHHHHHHHHccC---------
Confidence 3 3333322 22222 111110 0 1224788888888765421
Q ss_pred CCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhcC
Q psy7187 171 EKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRLF 214 (214)
Q Consensus 171 ~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~lf 214 (214)
-++|....+++.|..+|.+++++.|+.+||.+|+.+|
T Consensus 401 -------g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 401 -------TTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp -------SCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred -------CCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 1689999999999999999999999999999999876
No 14
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.73 E-value=6.4e-09 Score=88.11 Aligned_cols=59 Identities=20% Similarity=0.232 Sum_probs=35.0
Q ss_pred ceeeccCCceEeeccCCCCCHH--------------HHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecC
Q psy7187 4 GAMVLADGGVVCIDEFDKMRED--------------DRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANS 62 (214)
Q Consensus 4 G~l~la~~Gv~~iDE~~~~~~~--------------~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np 62 (214)
|.+..+++||+||||++++..+ .++.|++.||.+.+++.+.|.....+.++.+++++|+
T Consensus 131 ~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~ 203 (376)
T 1um8_A 131 WNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDI 203 (376)
T ss_dssp TCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC---------------CEECTTC
T ss_pred chhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCe
Confidence 4556678999999999999988 9999999999999988888877766666666666665
No 15
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.70 E-value=1.3e-08 Score=83.29 Aligned_cols=170 Identities=18% Similarity=0.229 Sum_probs=102.6
Q ss_pred cceeecc-CCceEeeccCCCCCHHH------------HHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCC
Q psy7187 3 GGAMVLA-DGGVVCIDEFDKMREDD------------RVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDD 69 (214)
Q Consensus 3 ~G~l~la-~~Gv~~iDE~~~~~~~~------------~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~ 69 (214)
+|.+..+ .+||+||||++++..+. ++.|++.|+.+.+.. +.| ..-+..+.+++++|+...
T Consensus 108 ~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~-~~~--~~~~~~~~~i~~~~~~~~---- 180 (310)
T 1ofh_A 108 GGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST-KHG--MVKTDHILFIASGAFQVA---- 180 (310)
T ss_dssp TTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEE-TTE--EEECTTCEEEEEECCSSS----
T ss_pred hHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEec-ccc--cccCCcEEEEEcCCcccC----
Confidence 3445454 47999999999998765 889999999887765 233 233557889999876411
Q ss_pred CcccccccCCCCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHh-ccCCCCC
Q psy7187 70 TKGEQNIDFMPTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRM-RCGPRLT 148 (214)
Q Consensus 70 ~~~~~~~~l~~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~-~~~p~ls 148 (214)
....++++|++||++.+.+... +.+.-. .++..+ . ...+++|...++. ...+.++
T Consensus 181 ----~~~~l~~~l~~R~~~~i~~~~~-~~~~~~----~il~~~----------~-----~~~~~~~~~~~~~~~~~~~~~ 236 (310)
T 1ofh_A 181 ----RPSDLIPELQGRLPIRVELTAL-SAADFE----RILTEP----------H-----ASLTEQYKALMATEGVNIAFT 236 (310)
T ss_dssp ----CGGGSCHHHHHTCCEEEECCCC-CHHHHH----HHHHSS----------T-----TCHHHHHHHHHHHTTCEEEEC
T ss_pred ----CcccCCHHHHhhCCceEEcCCc-CHHHHH----HHHHhh----------H-----HHHHHHHHHHHHhcCCeeccC
Confidence 1124788999999976666543 322111 222210 0 0133344433332 1234689
Q ss_pred HHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhcc-----CCCC-CCcHHHHHHHHh
Q psy7187 149 HEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKM-----QLEP-FAIDSHVTEALR 212 (214)
Q Consensus 149 ~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l-----~~r~-~V~~~Dv~~Ai~ 212 (214)
+++.++|.+++...+.... .-++|.+..+++-+-..+.+ .+.. .|+.+||.+|+.
T Consensus 237 ~~a~~~l~~~~~~~~~~~~---------~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~ 297 (310)
T 1ofh_A 237 TDAVKKIAEAAFRVNEKTE---------NIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALG 297 (310)
T ss_dssp HHHHHHHHHHHHHHHHHSC---------CCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTC
T ss_pred HHHHHHHHHHhhhhccccc---------ccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHH
Confidence 9999999887643221110 22578888777765533222 2222 599999999874
No 16
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.66 E-value=2.5e-08 Score=84.49 Aligned_cols=145 Identities=19% Similarity=0.280 Sum_probs=92.8
Q ss_pred cceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCC
Q psy7187 3 GGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTI 82 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~l 82 (214)
+|.+..|+||.+|+||+++|+.+.+..|+.+|++|+++ +-|.....+.++.+|+|+|..-.. ......+...|
T Consensus 215 ~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~--~~g~~~~~~~~~rii~at~~~l~~-----~v~~g~fr~dL 287 (368)
T 3dzd_A 215 KGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFT--RLGGNQKIEVDIRVISATNKNLEE-----EIKKGNFREDL 287 (368)
T ss_dssp ECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEEC--CBTCCCBEECCCEEEEEESSCHHH-----HHHTTSSCHHH
T ss_pred CChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcc--cCCCCcceeeeeEEEEecCCCHHH-----HHHcCCccHHH
Confidence 57788899999999999999999999999999999865 467677789999999999975100 01122355667
Q ss_pred CCcccEEEE-ecCCCCcccc-HHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHH
Q psy7187 83 LSRFDMIFI-IKDEHDETRD-ITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYV 160 (214)
Q Consensus 83 ldRFDL~~~-~~~~~~~~~d-~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~ 160 (214)
+.|+..+-+ ++.-.+...| ..++.+.++........ -.+.+++++.+.|..|-
T Consensus 288 ~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~------------------------~~~~~~~~a~~~L~~~~- 342 (368)
T 3dzd_A 288 YYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKK------------------------NCFELSEETKEYLMKQE- 342 (368)
T ss_dssp HHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTC------------------------CCCCBCHHHHHHHHTCC-
T ss_pred HHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCC------------------------CCCCcCHHHHHHHHhCC-
Confidence 777654432 2222222122 34455554433221100 12467888887775431
Q ss_pred HHhcCCCcCCCCccccccCHHHHHHHHHHHHHHh
Q psy7187 161 LMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMA 194 (214)
Q Consensus 161 ~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A 194 (214)
-+=.+|.|+.+++-+-..+
T Consensus 343 ---------------wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 343 ---------------WKGNVRELKNLIERAVILC 361 (368)
T ss_dssp ---------------CTTHHHHHHHHHHHHHHTC
T ss_pred ---------------CCcHHHHHHHHHHHHHHhC
Confidence 1224688888777665554
No 17
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.58 E-value=3.2e-07 Score=77.01 Aligned_cols=138 Identities=14% Similarity=0.171 Sum_probs=89.2
Q ss_pred ceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCC--CCCCCCcccccccCCCCCCCcccEE
Q psy7187 12 GVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVF--GRWDDTKGEQNIDFMPTILSRFDMI 89 (214)
Q Consensus 12 Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~--g~~~~~~~~~~~~l~~~lldRFDL~ 89 (214)
||+||||++.++.+..+.|+..|++... .+.++++.++.. +.-. ......++++|++||..
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~-------------~~~ii~t~~~~~~i~~t~---~~~~~~l~~~l~sR~~~- 253 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMA-------------PVLIMATNRGITRIRGTS---YQSPHGIPIDLLDRLLI- 253 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTC-------------CEEEEEESCSEEECBTSS---CEEETTCCHHHHTTEEE-
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCC-------------CeeeeecccceeeeeccC---CCCcccCCHHHHhhccE-
Confidence 6999999999999999999999987432 122333322210 0000 00122488899999976
Q ss_pred EEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcC
Q psy7187 90 FIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKED 169 (214)
Q Consensus 90 ~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~ 169 (214)
+.+. +++.+.... ++... ++. ....+++++.++|.++...
T Consensus 254 i~~~-~~~~~e~~~----il~~~--------------------------~~~-~~~~~~~~~l~~l~~~~~~-------- 293 (368)
T 3uk6_A 254 VSTT-PYSEKDTKQ----ILRIR--------------------------CEE-EDVEMSEDAYTVLTRIGLE-------- 293 (368)
T ss_dssp EEEC-CCCHHHHHH----HHHHH--------------------------HHH-TTCCBCHHHHHHHHHHHHH--------
T ss_pred EEec-CCCHHHHHH----HHHHH--------------------------HHH-cCCCCCHHHHHHHHHHhcC--------
Confidence 4443 333222111 11111 111 1335888888888765421
Q ss_pred CCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhcC
Q psy7187 170 GEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRLF 214 (214)
Q Consensus 170 ~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~lf 214 (214)
-++|.+..+++-|...|...+++.|+.+||.+|+..|
T Consensus 294 --------G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 294 --------TSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp --------SCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred --------CCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 2689999999999999999999999999999998764
No 18
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.47 E-value=1.2e-07 Score=77.77 Aligned_cols=102 Identities=14% Similarity=0.185 Sum_probs=67.6
Q ss_pred eeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC-------CCCCCCCcc-cc---
Q psy7187 6 MVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV-------FGRWDDTKG-EQ--- 74 (214)
Q Consensus 6 l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~-------~g~~~~~~~-~~--- 74 (214)
+..+.+||++|||+++++++.++.|++.|+++.++.. .|....++ ++.+|+|+|+. .+..+.... ..
T Consensus 115 ~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~-~~~~~~~~-~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~ 192 (311)
T 4fcw_A 115 VRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDS-HGRTVDFR-NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVF 192 (311)
T ss_dssp HHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECT-TSCEEECT-TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTH
T ss_pred HHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcC-CCCEEECC-CcEEEEecccCHHHHHhhhcccccHHHHHHHHH
Confidence 3455779999999999999999999999999998842 23333332 56699999993 111111111 11
Q ss_pred ---cccCCCCCCCcccEEEEecCCCCccccHHHHHHHHH
Q psy7187 75 ---NIDFMPTILSRFDMIFIIKDEHDETRDITLAKHIMK 110 (214)
Q Consensus 75 ---~~~l~~~lldRFDL~~~~~~~~~~~~d~~ia~~il~ 110 (214)
...++++|++|||.++.+.. ++.+.-..|..+.+.
T Consensus 193 ~~~~~~~~~~l~~R~~~~~~~~p-~~~~~~~~i~~~~l~ 230 (311)
T 4fcw_A 193 KVLQQHFRPEFLNRLDEIVVFRP-LTKEQIRQIVEIQMS 230 (311)
T ss_dssp HHHHHHSCHHHHTTCSEEEECCC-CCHHHHHHHHHHHTH
T ss_pred HHHHHhCCHHHHhcCCeEEEeCC-CCHHHHHHHHHHHHH
Confidence 33688999999998777654 444444444444443
No 19
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.45 E-value=4.6e-07 Score=78.63 Aligned_cols=135 Identities=13% Similarity=0.172 Sum_probs=83.3
Q ss_pred ccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEee--cCCCCCCCCCcccccccCCCCCCCc
Q psy7187 8 LADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAA--NSVFGRWDDTKGEQNIDFMPTILSR 85 (214)
Q Consensus 8 la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~--Np~~g~~~~~~~~~~~~l~~~lldR 85 (214)
.+.++|+||||++.|+.+.++.|+..||+++ +.+|+++ ||. ..+.++|++|
T Consensus 104 ~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~---------------v~lI~att~n~~------------~~l~~aL~sR 156 (447)
T 3pvs_A 104 AGRRTILFVDEVHRFNKSQQDAFLPHIEDGT---------------ITFIGATTENPS------------FELNSALLSR 156 (447)
T ss_dssp TTCCEEEEEETTTCC------CCHHHHHTTS---------------CEEEEEESSCGG------------GSSCHHHHTT
T ss_pred cCCCcEEEEeChhhhCHHHHHHHHHHHhcCc---------------eEEEecCCCCcc------------cccCHHHhCc
Confidence 3578999999999999999999999999865 4455555 442 2378999999
Q ss_pred ccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcC
Q psy7187 86 FDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNG 165 (214)
Q Consensus 86 FDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~ 165 (214)
|. ++.+ ...+.+.-..+..+.+. .... . + .. ....+++++.+.|.+++
T Consensus 157 ~~-v~~l-~~l~~edi~~il~~~l~----~~~~----~---~-----------~~--~~~~i~~~al~~L~~~~------ 204 (447)
T 3pvs_A 157 AR-VYLL-KSLSTEDIEQVLTQAME----DKTR----G---Y-----------GG--QDIVLPDETRRAIAELV------ 204 (447)
T ss_dssp EE-EEEC-CCCCHHHHHHHHHHHHH----CTTT----S---S-----------TT--SSEECCHHHHHHHHHHH------
T ss_pred ee-EEee-CCcCHHHHHHHHHHHHH----HHhh----h---h-----------cc--ccCcCCHHHHHHHHHHC------
Confidence 96 3333 33332222222222221 1000 0 0 00 12357889888887763
Q ss_pred CCcCCCCccccccCHHHHHHHHHHHHHHhccC--CCCCCcHHHHHHHHh
Q psy7187 166 SKEDGEKKLNIPITVRQLEAIVRIAESMAKMQ--LEPFAIDSHVTEALR 212 (214)
Q Consensus 166 ~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~--~r~~V~~~Dv~~Ai~ 212 (214)
+=.+|.+..++..+-..|... +...||.+|+.+++.
T Consensus 205 -----------~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~ 242 (447)
T 3pvs_A 205 -----------NGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAG 242 (447)
T ss_dssp -----------CSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHT
T ss_pred -----------CCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHh
Confidence 115788999999888888765 667899999998864
No 20
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.41 E-value=1.1e-07 Score=84.57 Aligned_cols=151 Identities=19% Similarity=0.212 Sum_probs=84.7
Q ss_pred CCceEeeccCCCCCHH----HHHHHHHhhhcCeE-EEEecceEEEEe-CceEEEEeecCCCCCCCCCcccccccCCCCCC
Q psy7187 10 DGGVVCIDEFDKMRED----DRVAIHEAMEQQTI-SIAKAGITTTLN-SRCSVLAAANSVFGRWDDTKGEQNIDFMPTIL 83 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~----~~~~L~e~me~~~i-~i~~~g~~~~lp-a~~~viaa~Np~~g~~~~~~~~~~~~l~~~ll 83 (214)
++||+|+||++++..+ .++.|++.|+.+.. .+...+....++ .++.+|+|+|+... ++++|+
T Consensus 175 ~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~------------l~~aL~ 242 (543)
T 3m6a_A 175 LNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLAT------------IPGPLR 242 (543)
T ss_dssp SSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTT------------SCHHHH
T ss_pred cCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCcccc------------CCHHHH
Confidence 7889999999999987 45889999986443 222233333333 57899999999643 889999
Q ss_pred CcccEEEEecCCCCccccHHHHHHHH-HHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHH
Q psy7187 84 SRFDMIFIIKDEHDETRDITLAKHIM-KVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLM 162 (214)
Q Consensus 84 dRFDL~~~~~~~~~~~~d~~ia~~il-~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~ 162 (214)
+||+. +.+ +.++.+....|..+.+ ......... ..-...+++++...|...|.
T Consensus 243 ~R~~v-i~~-~~~~~~e~~~Il~~~l~~~~~~~~~~----------------------~~~~i~i~~~~l~~l~~~~~-- 296 (543)
T 3m6a_A 243 DRMEI-INI-AGYTEIEKLEIVKDHLLPKQIKEHGL----------------------KKSNLQLRDQAILDIIRYYT-- 296 (543)
T ss_dssp HHEEE-EEC-CCCCHHHHHHHHHHTHHHHHHHHTTC----------------------CGGGCEECHHHHHHHHHHHC--
T ss_pred hhcce-eee-CCCCHHHHHHHHHHHHHHHHHHHcCC----------------------CcccccCCHHHHHHHHHhCC--
Confidence 99974 333 4444444444433322 111110000 00022468888888777662
Q ss_pred hcCCCcCCCCccccccCHHHHHHHHHHHHHHhcc------CCCCCCcHHHHHHHH
Q psy7187 163 RNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKM------QLEPFAIDSHVTEAL 211 (214)
Q Consensus 163 r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l------~~r~~V~~~Dv~~Ai 211 (214)
.+-.+|.++..+.-.-..|.. .....|+.+|+.+++
T Consensus 297 -------------~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~L 338 (543)
T 3m6a_A 297 -------------REAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFI 338 (543)
T ss_dssp -------------CCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHH
T ss_pred -------------hhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHh
Confidence 122456665544332222221 134478899988875
No 21
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.38 E-value=2.8e-08 Score=83.84 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=34.4
Q ss_pred ceeeccCCceEeeccCCCCCHH--------------HHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecC
Q psy7187 4 GAMVLADGGVVCIDEFDKMRED--------------DRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANS 62 (214)
Q Consensus 4 G~l~la~~Gv~~iDE~~~~~~~--------------~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np 62 (214)
|.+..+++||+||||+++++.+ +++.|++.||...+.+...|....-+.++.+++|+|.
T Consensus 110 ~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~ 182 (363)
T 3hws_A 110 YDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKI 182 (363)
T ss_dssp TCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSS
T ss_pred hhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCc
Confidence 4456678999999999999877 8999999999555556444443333334555555555
No 22
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.27 E-value=8.1e-06 Score=67.96 Aligned_cols=143 Identities=18% Similarity=0.200 Sum_probs=91.4
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEE--Eec---ceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCC
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISI--AKA---GITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTIL 83 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i--~~~---g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~ll 83 (214)
..++|+||||++.+.+...+.|+..|+.+.+.+ .+. .........+.++++.|+. + .||+++.
T Consensus 101 ~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~-~-----------~Ls~~l~ 168 (334)
T 1in4_A 101 ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRS-G-----------LLSSPLR 168 (334)
T ss_dssp CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCG-G-----------GSCHHHH
T ss_pred cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCc-c-----------cCCHHHH
Confidence 467899999999999988999999998764321 111 0111122357788777664 2 3899999
Q ss_pred CcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHh
Q psy7187 84 SRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMR 163 (214)
Q Consensus 84 dRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r 163 (214)
+||.+.+.+ +..+.+ .+.+. +... ++. ....+++++..+|.+.
T Consensus 169 sR~~l~~~L-d~~~~~---~l~~i-L~~~--------------------------~~~-~~~~~~~~~~~~ia~~----- 211 (334)
T 1in4_A 169 SRFGIILEL-DFYTVK---ELKEI-IKRA--------------------------ASL-MDVEIEDAAAEMIAKR----- 211 (334)
T ss_dssp TTCSEEEEC-CCCCHH---HHHHH-HHHH--------------------------HHH-TTCCBCHHHHHHHHHT-----
T ss_pred HhcCceeeC-CCCCHH---HHHHH-HHHH--------------------------HHH-cCCCcCHHHHHHHHHh-----
Confidence 999876544 333322 22111 1111 111 1234677776666431
Q ss_pred cCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 164 NGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 164 ~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
. .=++|....+++.+...|.+.++..|+.+++.+|+.
T Consensus 212 ~------------~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~ 248 (334)
T 1in4_A 212 S------------RGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTME 248 (334)
T ss_dssp S------------TTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred c------------CCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 1 116799999999999999998888999999999875
No 23
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.27 E-value=1.3e-05 Score=82.07 Aligned_cols=141 Identities=16% Similarity=0.198 Sum_probs=95.0
Q ss_pred cCCceEeeccCCCCCHHHHHHH-------HHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCC
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAI-------HEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPT 81 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L-------~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~ 81 (214)
..|..+|+||||++++++++.| +++|.++..++.-.|....++..|.|++|+||. +. ...+||.+
T Consensus 696 ~~Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPg--y~------g~~eLP~~ 767 (2695)
T 4akg_A 696 QIGAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPG--YN------GRSELPEN 767 (2695)
T ss_dssp HHTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCC--SS------SSCCCCHH
T ss_pred hcCCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCC--cc------CcccccHH
Confidence 3478999999999999999988 889988887777789999999999999999994 21 23359999
Q ss_pred CCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHH
Q psy7187 82 ILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVL 161 (214)
Q Consensus 82 lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~ 161 (214)
|.+|| ..+.+ +.+|.+ .+++-++.. .. +...+.....+...|..
T Consensus 768 Lk~~F-r~v~m-~~Pd~~---~i~ei~l~s----------------------------~G---f~~a~~la~kiv~~~~l 811 (2695)
T 4akg_A 768 LKKSF-REFSM-KSPQSG---TIAEMILQI----------------------------MG---FEDSKSLASKIVHFLEL 811 (2695)
T ss_dssp HHTTE-EEEEC-CCCCHH---HHHHHHHHH----------------------------HH---CSSHHHHHHHHHHHHHH
T ss_pred HHhhe-EEEEe-eCCCHH---HHHHHHHHh----------------------------cC---CCchHHHHHHHHHHHHH
Confidence 99999 44444 334422 223222221 11 11233445566666665
Q ss_pred HhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccC
Q psy7187 162 MRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQ 197 (214)
Q Consensus 162 ~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~ 197 (214)
.|..-+. ......+.|++.++++.|...-+-.
T Consensus 812 ~~e~ls~----q~hydfglRalksvL~~ag~lkr~~ 843 (2695)
T 4akg_A 812 LSSKCSS----MNHYHFGLRTLKGVLRNCSPLISEF 843 (2695)
T ss_dssp HHHHSCC----CTTCCCSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhCc----CCcccccHHHHHHHHHHHHHhhccC
Confidence 5542221 1124578999999999887665543
No 24
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.27 E-value=1.1e-06 Score=71.82 Aligned_cols=142 Identities=19% Similarity=0.127 Sum_probs=85.4
Q ss_pred eeeccCCceEeeccCCCC---------CHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCccccc
Q psy7187 5 AMVLADGGVVCIDEFDKM---------REDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQN 75 (214)
Q Consensus 5 ~l~la~~Gv~~iDE~~~~---------~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~ 75 (214)
.+..+.+||+||||++.+ +...+..|++.|+++ +.++.+|+++|+..- ...
T Consensus 125 ~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~-------------~~~~~~i~~~~~~~~-------~~~ 184 (309)
T 3syl_A 125 VLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN-------------RDDLVVILAGYADRM-------ENF 184 (309)
T ss_dssp HHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC-------------TTTCEEEEEECHHHH-------HHH
T ss_pred HHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC-------------CCCEEEEEeCChHHH-------HHH
Confidence 344578899999999966 888999999999975 356888999987410 011
Q ss_pred ccCCCCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHH
Q psy7187 76 IDFMPTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKL 155 (214)
Q Consensus 76 ~~l~~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i 155 (214)
..+.++|.+||+..+.+... +.+.-..+..+.+.. ....+++++.+.+
T Consensus 185 ~~~~~~l~~R~~~~i~~~~~-~~~~~~~il~~~l~~-------------------------------~~~~~~~~~~~~l 232 (309)
T 3syl_A 185 FQSNPGFRSRIAHHIEFPDY-SDEELFEIAGHMLDD-------------------------------QNYQMTPEAETAL 232 (309)
T ss_dssp HHHSTTHHHHEEEEEEECCC-CHHHHHHHHHHHHHH-------------------------------TTCEECHHHHHHH
T ss_pred HhhCHHHHHhCCeEEEcCCc-CHHHHHHHHHHHHHH-------------------------------cCCCCCHHHHHHH
Confidence 23569999999987776544 332222222222211 1224677888888
Q ss_pred HHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccC----CCCCCcHHHH
Q psy7187 156 KNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQ----LEPFAIDSHV 207 (214)
Q Consensus 156 ~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~----~r~~V~~~Dv 207 (214)
.+++...+... .+-+.|.+..+++-+...+..+ ....++.+|+
T Consensus 233 ~~~~~~~~~~~---------~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l 279 (309)
T 3syl_A 233 RAYIGLRRNQP---------HFANARSIRNALDRARLRQANRLFTASSGPLDARAL 279 (309)
T ss_dssp HHHHHHHTTSS---------SCCHHHHHHHHHHHHHHHHHHHHHHC---CEEHHHH
T ss_pred HHHHHHhccCC---------CCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHH
Confidence 77665443221 1224777777776665433222 2344555544
No 25
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.25 E-value=1.9e-07 Score=85.98 Aligned_cols=101 Identities=16% Similarity=0.174 Sum_probs=65.1
Q ss_pred eeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCc
Q psy7187 6 MVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSR 85 (214)
Q Consensus 6 l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldR 85 (214)
+-.+.+||+|+||++++++++++.|+++|++|.++.. +.....+.++.||+|+|......+.....-...+++.|++|
T Consensus 575 ~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~--~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~R 652 (758)
T 3pxi_A 575 VRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDS--KGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINR 652 (758)
T ss_dssp HHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-------CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTT
T ss_pred HHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcC--CCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhh
Confidence 3456789999999999999999999999999998874 33345567899999999742210000001112378999999
Q ss_pred ccEEEEecCCCCccccHHHHHHHH
Q psy7187 86 FDMIFIIKDEHDETRDITLAKHIM 109 (214)
Q Consensus 86 FDL~~~~~~~~~~~~d~~ia~~il 109 (214)
||.++.+.. .+.+.-..|..+.+
T Consensus 653 l~~~i~~~~-l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 653 IDEIIVFHS-LEKKHLTEIVSLMS 675 (758)
T ss_dssp SSEEEECC---CHHHHHHHHHHHH
T ss_pred CCeEEecCC-CCHHHHHHHHHHHH
Confidence 998666544 34333334444433
No 26
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.14 E-value=8.3e-07 Score=82.84 Aligned_cols=100 Identities=14% Similarity=0.187 Sum_probs=65.8
Q ss_pred ccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCC-C----C--Ccc-c------
Q psy7187 8 LADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRW-D----D--TKG-E------ 73 (214)
Q Consensus 8 la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~-~----~--~~~-~------ 73 (214)
.+.+||+||||++++++++++.|+++|++|.++-. .|....+ .++.||+|+|.....+ + . ... .
T Consensus 658 ~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~-~g~~vd~-~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~ 735 (854)
T 1qvr_A 658 RRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDS-HGRTVDF-RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKV 735 (854)
T ss_dssp HCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCS-SSCCEEC-TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hCCCeEEEEecccccCHHHHHHHHHHhccCceECC-CCCEecc-CCeEEEEecCcChHHHhhhcccccchHHHHHHHHHH
Confidence 35689999999999999999999999999998732 3444443 3577999999831100 0 0 000 0
Q ss_pred ccccCCCCCCCcccEEEEecCCCCccccHHHHHHHHH
Q psy7187 74 QNIDFMPTILSRFDMIFIIKDEHDETRDITLAKHIMK 110 (214)
Q Consensus 74 ~~~~l~~~lldRFDL~~~~~~~~~~~~d~~ia~~il~ 110 (214)
....+.+.|++|||.++.... .+.+.-..|.++.+.
T Consensus 736 ~~~~f~~~l~~Rl~~~i~~~p-l~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 736 LQQHFRPEFLNRLDEIVVFRP-LTKEQIRQIVEIQLS 771 (854)
T ss_dssp HHTTSCHHHHHTCSBCCBCCC-CCHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHhcCeEEeCCC-CCHHHHHHHHHHHHH
Confidence 133578899999987766543 444444445444444
No 27
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.11 E-value=1.1e-05 Score=82.53 Aligned_cols=90 Identities=17% Similarity=0.097 Sum_probs=66.7
Q ss_pred CceEeeccCCCCCHH------HHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC--CCCCCCCcccccccCCCCC
Q psy7187 11 GGVVCIDEFDKMRED------DRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV--FGRWDDTKGEQNIDFMPTI 82 (214)
Q Consensus 11 ~Gv~~iDE~~~~~~~------~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~--~g~~~~~~~~~~~~l~~~l 82 (214)
+.|+||||+|.-..+ .++.|++.||.|.+...+.+...++ .++++||||||+ +|++ .|++.+
T Consensus 1337 ~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~-~~i~lIaA~Npp~~gGR~---------~l~~rl 1406 (2695)
T 4akg_A 1337 NLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTI-ERIHIVGACNPPTDPGRI---------PMSERF 1406 (2695)
T ss_dssp CEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEE-ESEEEEEEECCTTSTTCC---------CCCHHH
T ss_pred eEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEe-cCEEEEEecCCCccCCCc---------cCChhh
Confidence 459999998774433 7899999999998888777766676 789999999998 4654 389999
Q ss_pred CCcccEEEEecCCCCccccHHHHHHHHHHH
Q psy7187 83 LSRFDMIFIIKDEHDETRDITLAKHIMKVH 112 (214)
Q Consensus 83 ldRFDL~~~~~~~~~~~~d~~ia~~il~~~ 112 (214)
+.||- ++. .+.++.+.-..|-..++..+
T Consensus 1407 lRrf~-vi~-i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1407 TRHAA-ILY-LGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp HTTEE-EEE-CCCCTTTHHHHHHHHHHHHH
T ss_pred hheee-EEE-eCCCCHHHHHHHHHHHHHHH
Confidence 99993 333 34555555555555555544
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.06 E-value=2.5e-05 Score=66.23 Aligned_cols=63 Identities=16% Similarity=0.276 Sum_probs=43.3
Q ss_pred CCceEeeccCCCC-----------CHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccC
Q psy7187 10 DGGVVCIDEFDKM-----------REDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDF 78 (214)
Q Consensus 10 ~~Gv~~iDE~~~~-----------~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l 78 (214)
..||+||||++.+ ....+..|+..|+. .....+.++.||||+|+.. .+
T Consensus 207 ~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~---------~~~~~~~~v~vI~atn~~~------------~l 265 (389)
T 3vfd_A 207 QPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDG---------VQSAGDDRVLVMGATNRPQ------------EL 265 (389)
T ss_dssp SSEEEEEETGGGGC--------CTHHHHHHHHHHHHHH---------HC-----CEEEEEEESCGG------------GC
T ss_pred CCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhc---------ccccCCCCEEEEEecCCch------------hc
Confidence 4489999999877 44566677777762 2233356799999999853 27
Q ss_pred CCCCCCcccEEEEec
Q psy7187 79 MPTILSRFDMIFIIK 93 (214)
Q Consensus 79 ~~~lldRFDL~~~~~ 93 (214)
.+.+++||+..+.+.
T Consensus 266 ~~~l~~R~~~~i~i~ 280 (389)
T 3vfd_A 266 DEAVLRRFIKRVYVS 280 (389)
T ss_dssp CHHHHTTCCEEEECC
T ss_pred CHHHHcCcceEEEcC
Confidence 789999999766553
No 29
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.05 E-value=4.3e-06 Score=67.60 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=33.1
Q ss_pred ccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 177 PITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 177 ~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
+.+.|.+..+++.|...|..++++.|+.+|+.+|+.
T Consensus 221 g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~ 256 (285)
T 3h4m_A 221 GCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVE 256 (285)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHH
Confidence 468899999999999999999999999999999975
No 30
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.04 E-value=3.9e-06 Score=72.53 Aligned_cols=162 Identities=19% Similarity=0.249 Sum_probs=94.3
Q ss_pred ceeecc-CCceEeeccCCCCCHH------------HHHHHHHhhhcCeEEEEecceEEEEeC-ceEEEEee-----cCCC
Q psy7187 4 GAMVLA-DGGVVCIDEFDKMRED------------DRVAIHEAMEQQTISIAKAGITTTLNS-RCSVLAAA-----NSVF 64 (214)
Q Consensus 4 G~l~la-~~Gv~~iDE~~~~~~~------------~~~~L~e~me~~~i~i~~~g~~~~lpa-~~~viaa~-----Np~~ 64 (214)
+++..| .+||+++||++++..+ ++++|+++||-.+++. +.+ .+.. +..+|+|. ||.
T Consensus 243 ~ai~~ae~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~-~~~---~~d~~~ilfI~~gaf~~~~~~- 317 (444)
T 1g41_A 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST-KHG---MVKTDHILFIASGAFQVARPS- 317 (444)
T ss_dssp HHHHHHHHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEE-TTE---EEECTTCEEEEEECCSSCCGG-
T ss_pred HHHHHhccCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccc-ccc---eecCCcEEEEeccccccCChh-
Confidence 345566 7899999999998643 7789999999877765 332 2232 35667775 442
Q ss_pred CCCCCCcccccccCCCCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhH-hcc
Q psy7187 65 GRWDDTKGEQNIDFMPTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCR-MRC 143 (214)
Q Consensus 65 g~~~~~~~~~~~~l~~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar-~~~ 143 (214)
.+-++|++||++++.+.+... +.- .+|+.. . ....+++|..... ..+
T Consensus 318 ------------dlipel~~R~~i~i~l~~lt~-~e~----~~Il~~-----------~----~~~l~~q~~~~~~~~~~ 365 (444)
T 1g41_A 318 ------------DLIPELQGRLPIRVELTALSA-ADF----ERILTE-----------P----HASLTEQYKALMATEGV 365 (444)
T ss_dssp ------------GSCHHHHTTCCEEEECCCCCH-HHH----HHHHHS-----------S----TTCHHHHHHHHHHTTTC
T ss_pred ------------hcchHHhcccceeeeCCCCCH-HHH----HHHHHH-----------H----HHhHHHHHHHHhcccCc
Confidence 144789999999888755432 111 122220 0 1124455543322 222
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHH-----HHHHHhccCCC-CCCcHHHHHHHH
Q psy7187 144 GPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVR-----IAESMAKMQLE-PFAIDSHVTEAL 211 (214)
Q Consensus 144 ~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lir-----lA~a~A~l~~r-~~V~~~Dv~~Ai 211 (214)
.-.++++|...|.+.+....... -....|.+.+++. ++.-....... -.|+.++|.+.+
T Consensus 366 ~l~~~~~al~~i~~~a~~~~~~t---------~~~GaR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l 430 (444)
T 1g41_A 366 NIAFTTDAVKKIAEAAFRVNEKT---------ENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADAL 430 (444)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHS---------CCCGGGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHH
T ss_pred eEEECHHHHHHHHHHHHHhccCC---------ccCCchHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhc
Confidence 34689999999988765421111 1345777766554 33333322221 257888887654
No 31
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.98 E-value=9.2e-05 Score=56.60 Aligned_cols=124 Identities=19% Similarity=0.238 Sum_probs=78.0
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccE
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDM 88 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL 88 (214)
+.++|++|||++.++.+.++.|+..|++. +..+.+|+++|... .+.+++.+||.
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~~~~~~------------~~~~~l~~r~~- 154 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMY-------------SKSCRFILSCNYVS------------RIIEPIQSRCA- 154 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGG------------GSCHHHHTTSE-
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhc-------------CCCCeEEEEeCChh------------hcCHHHHHhCc-
Confidence 56789999999999999999999999863 33567788887642 26678889987
Q ss_pred EEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCc
Q psy7187 89 IFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKE 168 (214)
Q Consensus 89 ~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~ 168 (214)
.+.+. +.+.+ .+. .++.. +++. ....+++++.+.+.+.+
T Consensus 155 ~i~~~-~~~~~---~~~-~~l~~--------------------------~~~~-~~~~~~~~~~~~l~~~~--------- 193 (226)
T 2chg_A 155 VFRFK-PVPKE---AMK-KRLLE--------------------------ICEK-EGVKITEDGLEALIYIS--------- 193 (226)
T ss_dssp EEECC-CCCHH---HHH-HHHHH--------------------------HHHH-HTCCBCHHHHHHHHHHH---------
T ss_pred eeecC-CCCHH---HHH-HHHHH--------------------------HHHH-cCCCCCHHHHHHHHHHc---------
Confidence 44332 22211 111 11111 1111 12247777777776432
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 169 DGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 169 ~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
+=.+|.+..+++-+...+ +.|+.+||.+|+.
T Consensus 194 --------~g~~r~l~~~l~~~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 194 --------GGDFRKAINALQGAAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp --------TTCHHHHHHHHHHHHHTC-----SCBCHHHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHhcC-----ceecHHHHHHHhc
Confidence 114666666655444433 7999999999875
No 32
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.87 E-value=6.4e-05 Score=59.67 Aligned_cols=36 Identities=11% Similarity=-0.042 Sum_probs=24.5
Q ss_pred ccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 177 PITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 177 ~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
+.+.|.+..+++-|...|..+++..|+.+|+..|+.
T Consensus 212 g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~ 247 (262)
T 2qz4_A 212 GFSGADIANICNEAALHAAREGHTSVHTLNFEYAVE 247 (262)
T ss_dssp TCCHHHHHHHHHHHHTC--------CCBCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 467889999999999999888899999999999875
No 33
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.80 E-value=9.8e-05 Score=61.96 Aligned_cols=65 Identities=20% Similarity=0.195 Sum_probs=43.9
Q ss_pred cCCceEeeccCCCCCH-----------HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCccccccc
Q psy7187 9 ADGGVVCIDEFDKMRE-----------DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNID 77 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~-----------~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~ 77 (214)
...+|+||||++.+.. ..+..|+..|+.. ....+.++.||||+|+.. .
T Consensus 175 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~---------~~~~~~~v~vI~atn~~~------------~ 233 (357)
T 3d8b_A 175 QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGA---------TTSSEDRILVVGATNRPQ------------E 233 (357)
T ss_dssp TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-------------CCCCEEEEEEESCGG------------G
T ss_pred cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcc---------cccCCCCEEEEEecCChh------------h
Confidence 3568999999977632 3455677777632 222355789999999852 2
Q ss_pred CCCCCCCcccEEEEecC
Q psy7187 78 FMPTILSRFDMIFIIKD 94 (214)
Q Consensus 78 l~~~lldRFDL~~~~~~ 94 (214)
+.+++++||+..+.+..
T Consensus 234 l~~~l~~Rf~~~i~i~~ 250 (357)
T 3d8b_A 234 IDEAARRRLVKRLYIPL 250 (357)
T ss_dssp BCHHHHTTCCEEEECCC
T ss_pred CCHHHHhhCceEEEeCC
Confidence 77899999997766543
No 34
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.73 E-value=0.00025 Score=58.61 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=41.1
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCccc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFD 87 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFD 87 (214)
++.+|++|||++.++++.++.|++.|++.. ..+.++.++|... .+.+++.+||.
T Consensus 132 ~~~~vliiDE~~~l~~~~~~~Ll~~le~~~-------------~~~~~il~~~~~~------------~l~~~l~sR~~ 185 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADAQSALRRTMETYS-------------GVTRFCLICNYVT------------RIIDPLASQCS 185 (353)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTT-------------TTEEEEEEESCGG------------GSCHHHHHHSE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHhcC-------------CCceEEEEeCchh------------hCcchhhccCc
Confidence 466799999999999999999999999742 2344555666532 26788889986
No 35
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.71 E-value=1.1e-05 Score=58.76 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=42.9
Q ss_pred cceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC
Q psy7187 3 GGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV 63 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~ 63 (214)
.|.+..|++|++||||++.++.+.+..|++.|+++. +.++.+|+|+|..
T Consensus 68 ~~~~~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~------------~~~~~iI~~tn~~ 116 (143)
T 3co5_A 68 MELLQKAEGGVLYVGDIAQYSRNIQTGITFIIGKAE------------RCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHTTTSEEEEEECTTCCHHHHHHHHHHHHHHT------------TTTCEEEEEEEEC
T ss_pred hhHHHhCCCCeEEEeChHHCCHHHHHHHHHHHHhCC------------CCCEEEEEecCCC
Confidence 466778899999999999999999999999999763 5678899999975
No 36
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.67 E-value=0.0004 Score=72.14 Aligned_cols=95 Identities=16% Similarity=0.156 Sum_probs=66.7
Q ss_pred ceeeccC--C--ceEeeccCCCCCHH------HHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCC--CCCCCCc
Q psy7187 4 GAMVLAD--G--GVVCIDEFDKMRED------DRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVF--GRWDDTK 71 (214)
Q Consensus 4 G~l~la~--~--Gv~~iDE~~~~~~~------~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~--g~~~~~~ 71 (214)
|.+..+- | .|+||||+|.-..+ .++.|++.|++|.+...+.+....+ .+++++|||||.. |+.
T Consensus 1364 G~~~~p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i-~d~~~vaamnPp~~gGr~---- 1438 (3245)
T 3vkg_A 1364 ETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKL-DKIQFVGACNPPTDAGRV---- 1438 (3245)
T ss_dssp CEEEEESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEE-SSEEEEEEECCTTSTTCC----
T ss_pred CcccCCCcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEe-cCeEEEEEcCCCCCCCCc----
Confidence 6655553 2 49999999986654 8899999999998877555555555 6899999999973 442
Q ss_pred ccccccCCCCCCCcccEEEEecCCCCccccHHHHHHHHH
Q psy7187 72 GEQNIDFMPTILSRFDMIFIIKDEHDETRDITLAKHIMK 110 (214)
Q Consensus 72 ~~~~~~l~~~lldRFDL~~~~~~~~~~~~d~~ia~~il~ 110 (214)
.+++.++.||-+ +.+ +.++.+.-..|-..++.
T Consensus 1439 -----~l~~Rf~r~F~v-i~i-~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1439 -----QLTHRFLRHAPI-LLV-DFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp -----CCCHHHHTTCCE-EEC-CCCCHHHHHHHHHHHHH
T ss_pred -----cCCHHHHhhceE-EEe-CCCCHHHHHHHHHHHHH
Confidence 499999999965 444 34444444444444443
No 37
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.65 E-value=0.00036 Score=72.46 Aligned_cols=139 Identities=13% Similarity=0.227 Sum_probs=86.7
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhh---------cCeEEEEec-ceEEEEeCceEEEEeecCCCCCCCCCcccccccC
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAME---------QQTISIAKA-GITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDF 78 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me---------~~~i~i~~~-g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l 78 (214)
..|+.+|+||||+++.++++.+.+.+. ..++.+ . |....++..|.+++||||. + .....|
T Consensus 655 ~~GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~--~~G~~i~l~~~~~vfiTmNpg--Y------~gr~eL 724 (3245)
T 3vkg_A 655 QCGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVEL--LGGKNISLHQDMGIFVTMNPG--Y------AGRSNL 724 (3245)
T ss_dssp HHTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECC--C---CEECCTTCEEEECBCCC--G------GGCCCS
T ss_pred hcCcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEe--cCCCEEeecCCeEEEEEeCCC--c------cCcccC
Confidence 358889999999999999998877665 345554 4 7788999999999999994 3 122369
Q ss_pred CCCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHH
Q psy7187 79 MPTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNR 158 (214)
Q Consensus 79 ~~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~ 158 (214)
|..|.++| ..+.|. .||.. .|++-++. +... .-.+.....+...
T Consensus 725 P~nLk~lF-r~v~m~-~Pd~~---~i~ei~L~----------------------------s~Gf---~~a~~La~k~~~~ 768 (3245)
T 3vkg_A 725 PDNLKKLF-RSMAMI-KPDRE---MIAQVMLY----------------------------SQGF---KTAEVLAGKIVPL 768 (3245)
T ss_dssp CHHHHTTE-EEEECC-SCCHH---HHHHHHHH----------------------------TTTC---SCHHHHHHHHHHH
T ss_pred hHHHHhhc-EEEEEe-CCCHH---HHHHHHHH----------------------------Hccc---chHHHHHHHHHHH
Confidence 99999999 444443 33322 22222222 1110 0112344555566
Q ss_pred HHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccC
Q psy7187 159 YVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQ 197 (214)
Q Consensus 159 y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~ 197 (214)
|...+..-+. ...+..+.|++.++++.|-..-+-.
T Consensus 769 ~~l~~e~LS~----Q~HYDfGLRalKsVL~~AG~lkr~~ 803 (3245)
T 3vkg_A 769 FKLCQEQLSA----QSHYDFGLRALKSVLVSAGGIKRKC 803 (3245)
T ss_dssp HHHHHHSSCC----CTTCCCSHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhCC----CCCCCCChHHHHHHHHHHHHHHHhh
Confidence 6554432221 1124578999999999987765543
No 38
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.64 E-value=0.00038 Score=56.38 Aligned_cols=65 Identities=20% Similarity=0.224 Sum_probs=42.1
Q ss_pred cCCceEeeccCCCCC-----------HHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCccccccc
Q psy7187 9 ADGGVVCIDEFDKMR-----------EDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNID 77 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~-----------~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~ 77 (214)
...+|+||||++.+. ...+..|+..|+..... ....+..|++++|... .
T Consensus 112 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--------~~~~~v~vi~~tn~~~------------~ 171 (297)
T 3b9p_A 112 MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN--------PDGDRIVVLAATNRPQ------------E 171 (297)
T ss_dssp TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--------------CEEEEEEESCGG------------G
T ss_pred cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc--------CCCCcEEEEeecCChh------------h
Confidence 456899999998773 34555667667643221 1123478889988742 2
Q ss_pred CCCCCCCcccEEEEec
Q psy7187 78 FMPTILSRFDMIFIIK 93 (214)
Q Consensus 78 l~~~lldRFDL~~~~~ 93 (214)
+.+++++||+..+.+.
T Consensus 172 l~~~l~~R~~~~i~~~ 187 (297)
T 3b9p_A 172 LDEAALRRFTKRVYVS 187 (297)
T ss_dssp BCHHHHHHCCEEEECC
T ss_pred CCHHHHhhCCeEEEeC
Confidence 7788899999776654
No 39
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.61 E-value=0.0002 Score=56.91 Aligned_cols=36 Identities=14% Similarity=0.002 Sum_probs=33.2
Q ss_pred ccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 177 PITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 177 ~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
+.+.|.+..+++-|...|..+.++.|+.+|+..|+.
T Consensus 215 G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 250 (257)
T 1lv7_A 215 GFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKD 250 (257)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 568999999999999999999999999999999975
No 40
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.55 E-value=0.00043 Score=58.00 Aligned_cols=63 Identities=19% Similarity=0.224 Sum_probs=44.5
Q ss_pred CCceEeeccCCCCCH-----------HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccC
Q psy7187 10 DGGVVCIDEFDKMRE-----------DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDF 78 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~-----------~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l 78 (214)
..+|+||||++.+.. ..++.|+..|+.-. .-+..+.||||+|... .|
T Consensus 143 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vI~atn~~~------------~l 200 (355)
T 2qp9_X 143 KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLVLGATNIPW------------QL 200 (355)
T ss_dssp SSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-------------CCEEEEEEESCGG------------GS
T ss_pred CCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc----------ccCCCeEEEeecCCcc------------cC
Confidence 568999999999874 24666777776311 1134688999999853 27
Q ss_pred CCCCCCcccEEEEecC
Q psy7187 79 MPTILSRFDMIFIIKD 94 (214)
Q Consensus 79 ~~~lldRFDL~~~~~~ 94 (214)
.+++++|||..+.+..
T Consensus 201 d~al~rRf~~~i~i~~ 216 (355)
T 2qp9_X 201 DSAIRRRFERRIYIPL 216 (355)
T ss_dssp CHHHHHTCCEEEECCC
T ss_pred CHHHHcccCEEEEeCC
Confidence 7889999998876543
No 41
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.54 E-value=0.00014 Score=60.05 Aligned_cols=63 Identities=19% Similarity=0.224 Sum_probs=43.8
Q ss_pred CCceEeeccCCCCCH-----------HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccC
Q psy7187 10 DGGVVCIDEFDKMRE-----------DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDF 78 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~-----------~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l 78 (214)
..+|+||||++.+.. ..+..|+..|+.-. ..+..+.||||+|... .|
T Consensus 110 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vi~atn~~~------------~l 167 (322)
T 3eie_A 110 KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLVLGATNIPW------------QL 167 (322)
T ss_dssp SSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG----------TSCCCEEEEEEESCGG------------GS
T ss_pred CCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc----------ccCCceEEEEecCChh------------hC
Confidence 448999999998754 34566777675311 0133588999999742 27
Q ss_pred CCCCCCcccEEEEecC
Q psy7187 79 MPTILSRFDMIFIIKD 94 (214)
Q Consensus 79 ~~~lldRFDL~~~~~~ 94 (214)
.+++++|||..+.+..
T Consensus 168 d~al~~Rf~~~i~~~~ 183 (322)
T 3eie_A 168 DSAIRRRFERRIYIPL 183 (322)
T ss_dssp CHHHHHHCCEEEECCC
T ss_pred CHHHHcccCeEEEeCC
Confidence 8899999998776543
No 42
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.54 E-value=0.0011 Score=51.13 Aligned_cols=124 Identities=18% Similarity=0.112 Sum_probs=75.8
Q ss_pred CCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccEE
Q psy7187 10 DGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDMI 89 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL~ 89 (214)
..++++|||++.++++.++.|+..|++. +..+.+|.++|... .+...+++|+ ..
T Consensus 126 ~~~vlviDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~t~~~~------------~~~~~l~~r~-~~ 179 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PEHVKFLLATTDPQ------------KLPVTILSRC-LQ 179 (250)
T ss_dssp SSEEEEEETGGGSCHHHHHHHHHHHHSC-------------CTTEEEEEEESCGG------------GSCHHHHTTS-EE
T ss_pred CceEEEEECcccccHHHHHHHHHHHhcC-------------CCceEEEEEeCChH------------hCCHHHHHHh-hh
Confidence 4579999999999999999999999852 44577777776531 2556677786 33
Q ss_pred EEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHH-HhHhccCCCCCHHHHHHHHHHHHHHhcCCCc
Q psy7187 90 FIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYIN-YCRMRCGPRLTHEAGEKLKNRYVLMRNGSKE 168 (214)
Q Consensus 90 ~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~-~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~ 168 (214)
+.+. +.+.+ .+.+++. +++. ..+.+++++.+.|.+.. .
T Consensus 180 i~l~-~l~~~-------------------------------e~~~~l~~~~~~-~~~~~~~~~~~~l~~~~-----~--- 218 (250)
T 1njg_A 180 FHLK-ALDVE-------------------------------QIRHQLEHILNE-EHIAHEPRALQLLARAA-----E--- 218 (250)
T ss_dssp EECC-CCCHH-------------------------------HHHHHHHHHHHH-TTCCBCHHHHHHHHHHH-----T---
T ss_pred ccCC-CCCHH-------------------------------HHHHHHHHHHHh-cCCCCCHHHHHHHHHHc-----C---
Confidence 3332 22221 1111211 1111 12356777766665532 0
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 169 DGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 169 ~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
+ .+|.+..+++-+-+ .....|+.+|+.+|+.+
T Consensus 219 --------G-~~~~~~~~~~~~~~----~~~~~i~~~~v~~~~~~ 250 (250)
T 1njg_A 219 --------G-SLRDALSLTDQAIA----SGDGQVSTQAVSAMLGT 250 (250)
T ss_dssp --------T-CHHHHHHHHHHHHT----TTTSSBCHHHHHHHSCC
T ss_pred --------C-CHHHHHHHHHHHHh----ccCceecHHHHHHHhCC
Confidence 1 57777777665532 23458999999998753
No 43
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.52 E-value=0.00026 Score=59.01 Aligned_cols=137 Identities=13% Similarity=0.050 Sum_probs=81.0
Q ss_pred eEeeccCCCCCHH--HHHHHHHhhh---cCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCccc
Q psy7187 13 VVCIDEFDKMRED--DRVAIHEAME---QQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFD 87 (214)
Q Consensus 13 v~~iDE~~~~~~~--~~~~L~e~me---~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFD 87 (214)
|++|||++.+... ..+.|...++ +..+ +.++.+|+++|...- ...+.+++.+||.
T Consensus 133 vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~-----------~~~~~~I~~t~~~~~---------~~~l~~~l~~r~~ 192 (387)
T 2v1u_A 133 IIVLDEIDFLPKRPGGQDLLYRITRINQELGD-----------RVWVSLVGITNSLGF---------VENLEPRVKSSLG 192 (387)
T ss_dssp EEEEETTTHHHHSTTHHHHHHHHHHGGGCC----------------CEEEEECSCSTT---------SSSSCHHHHTTTT
T ss_pred EEEEccHhhhcccCCCChHHHhHhhchhhcCC-----------CceEEEEEEECCCch---------HhhhCHHHHhcCC
Confidence 9999999998765 5556655554 2211 456888898887521 0126778888987
Q ss_pred EEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCC
Q psy7187 88 MIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSK 167 (214)
Q Consensus 88 L~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~ 167 (214)
...+...+.+.+.-.. ++..... . ......+++++.+.+.++...
T Consensus 193 ~~~i~l~~l~~~~~~~----il~~~~~-----------------------~--~~~~~~~~~~~~~~l~~~~~~------ 237 (387)
T 2v1u_A 193 EVELVFPPYTAPQLRD----ILETRAE-----------------------E--AFNPGVLDPDVVPLCAALAAR------ 237 (387)
T ss_dssp SEECCBCCCCHHHHHH----HHHHHHH-----------------------H--HBCTTTBCSSHHHHHHHHHHS------
T ss_pred CeEEeeCCCCHHHHHH----HHHHHHH-----------------------h--hccCCCCCHHHHHHHHHHHHH------
Confidence 5333333333221111 1111110 0 000124677777777665421
Q ss_pred cCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 168 EDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 168 ~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
.+=.+|.+..+++.+...|....+..|+.+|+..|+.
T Consensus 238 --------~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~ 274 (387)
T 2v1u_A 238 --------EHGDARRALDLLRVAGEIAERRREERVRREHVYSARA 274 (387)
T ss_dssp --------SSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred --------hccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 0115788888899888888888889999999998864
No 44
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.51 E-value=0.00074 Score=62.05 Aligned_cols=120 Identities=10% Similarity=0.088 Sum_probs=63.6
Q ss_pred cCCceEeeccCCCC---------CHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCC
Q psy7187 9 ADGGVVCIDEFDKM---------REDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFM 79 (214)
Q Consensus 9 a~~Gv~~iDE~~~~---------~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~ 79 (214)
+.++|+||||++.+ ..+..+.|...++.+ ++.+|+++|+..- ...+.+.
T Consensus 277 ~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~---------------~~~~I~at~~~~~-------~~~~~~d 334 (758)
T 1r6b_X 277 DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG---------------KIRVIGSTTYQEF-------SNIFEKD 334 (758)
T ss_dssp SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSC---------------CCEEEEEECHHHH-------HCCCCCT
T ss_pred cCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCC---------------CeEEEEEeCchHH-------hhhhhcC
Confidence 45799999999998 334455666666643 4678888887420 0122467
Q ss_pred CCCCCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccC-CCCCHHHHHHHHHH
Q psy7187 80 PTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCG-PRLTHEAGEKLKNR 158 (214)
Q Consensus 80 ~~lldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~-p~ls~ea~~~i~~~ 158 (214)
++|.+||+. + ..+.++.+....+-..+....... ..-.++.+.+.....++..++. +.+++.+.+.+...
T Consensus 335 ~aL~~Rf~~-i-~v~~p~~~e~~~il~~l~~~~~~~-------~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a 405 (758)
T 1r6b_X 335 RALARRFQK-I-DITEPSIEETVQIINGLKPKYEAH-------HDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEA 405 (758)
T ss_dssp TSSGGGEEE-E-ECCCCCHHHHHHHHHHHHHHHHHH-------HTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHH
T ss_pred HHHHhCceE-E-EcCCCCHHHHHHHHHHHHHHHHHh-------cCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHH
Confidence 889999983 3 334444443334333333321110 1123444555554444444332 23444555555443
Q ss_pred H
Q psy7187 159 Y 159 (214)
Q Consensus 159 y 159 (214)
.
T Consensus 406 ~ 406 (758)
T 1r6b_X 406 G 406 (758)
T ss_dssp H
T ss_pred H
Confidence 3
No 45
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.40 E-value=2.6e-05 Score=56.86 Aligned_cols=48 Identities=10% Similarity=0.276 Sum_probs=40.3
Q ss_pred cceeeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC
Q psy7187 3 GGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV 63 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~ 63 (214)
.|.+..|++|++||||++.++++.+..|++.|+. .+.++.+|+|+|..
T Consensus 69 ~~~~~~a~~g~l~ldei~~l~~~~q~~Ll~~l~~-------------~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 69 NDFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQ-------------EHRPFRLIGIGDTS 116 (145)
T ss_dssp HHHHHHHTTSCEEEECGGGSCHHHHHHHHHHHHS-------------SSCSSCEEEEESSC
T ss_pred hcHHHHcCCcEEEEcChHHCCHHHHHHHHHHHhh-------------cCCCEEEEEECCcC
Confidence 3566788999999999999999999999999932 24567899999974
No 46
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.38 E-value=0.00027 Score=58.02 Aligned_cols=64 Identities=23% Similarity=0.437 Sum_probs=49.1
Q ss_pred CCceEeeccCCCCC-HHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccE
Q psy7187 10 DGGVVCIDEFDKMR-EDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDM 88 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~-~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL 88 (214)
.++|++|||++.++ .+.++.|+..|++. +..+.+|+++|+.. .+.++|.+||.
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~-------------~~~~~iI~~~n~~~------------~l~~~l~sR~~- 158 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAY-------------SSNCSIIITANNID------------GIIKPLQSRCR- 158 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHH-------------GGGCEEEEEESSGG------------GSCTTHHHHSE-
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhC-------------CCCcEEEEEeCCcc------------ccCHHHHhhCc-
Confidence 67899999999999 99999999999863 35678888998852 37899999995
Q ss_pred EEEecCCCCccc
Q psy7187 89 IFIIKDEHDETR 100 (214)
Q Consensus 89 ~~~~~~~~~~~~ 100 (214)
++.+ ..++.+.
T Consensus 159 ~i~~-~~~~~~e 169 (324)
T 3u61_B 159 VITF-GQPTDED 169 (324)
T ss_dssp EEEC-CCCCHHH
T ss_pred EEEe-CCCCHHH
Confidence 3433 3444333
No 47
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.35 E-value=0.0011 Score=54.09 Aligned_cols=54 Identities=24% Similarity=0.318 Sum_probs=42.2
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCccc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFD 87 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFD 87 (214)
++++|++|||++.++++.++.|+..|++. |..+.+|.++|... .+.+++.+||.
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~i~~~~~~~------------~l~~~l~sr~~ 162 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMF-------------SSNVRFILSCNYSS------------KIIEPIQSRCA 162 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGG------------GSCHHHHHTEE
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhc-------------CCCCeEEEEeCCcc------------ccCHHHHhhCc
Confidence 67899999999999999999999999964 23456667776531 26677888886
No 48
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.22 E-value=0.0014 Score=50.75 Aligned_cols=136 Identities=19% Similarity=0.267 Sum_probs=79.6
Q ss_pred cCCceEeeccCCCCCHHH--HHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcc
Q psy7187 9 ADGGVVCIDEFDKMREDD--RVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRF 86 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~--~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRF 86 (214)
...++++|||++.++.+. .+.|++.++... ..+ ...+|.++|.....+ ..+.+.+.+||
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~----~~~-------~~~ii~~~~~~~~~~--------~~~~~~l~~r~ 163 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVA----EQK-------RGSLIVSASASPMEA--------GFVLPDLVSRM 163 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHH----HHC-------SCEEEEEESSCTTTT--------TCCCHHHHHHH
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHH----HcC-------CCeEEEEcCCCHHHH--------HHhhhhhhhHh
Confidence 457899999999998765 777777766411 011 123555555332111 11336677888
Q ss_pred c--EEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhc
Q psy7187 87 D--MIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRN 164 (214)
Q Consensus 87 D--L~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~ 164 (214)
+ .++.+... +.+....+..+ ++ +. ....+++++.++|.+.+
T Consensus 164 ~~~~~i~l~~~-~~~~~~~~l~~---------------------------~~---~~-~~~~~~~~~~~~l~~~~----- 206 (242)
T 3bos_A 164 HWGLTYQLQPM-MDDEKLAALQR---------------------------RA---AM-RGLQLPEDVGRFLLNRM----- 206 (242)
T ss_dssp HHSEEEECCCC-CGGGHHHHHHH---------------------------HH---HH-TTCCCCHHHHHHHHHHT-----
T ss_pred hcCceEEeCCC-CHHHHHHHHHH---------------------------HH---HH-cCCCCCHHHHHHHHHHc-----
Confidence 5 55555433 32222221111 11 11 12357888888776542
Q ss_pred CCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 165 GSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 165 ~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
+=++|.+..+++-+...|.... ..|+.+|+.+++.+
T Consensus 207 ------------~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~~ 242 (242)
T 3bos_A 207 ------------ARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLRL 242 (242)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHTC
T ss_pred ------------cCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhhC
Confidence 1157888888888877775555 56999999999863
No 49
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.19 E-value=0.00093 Score=55.18 Aligned_cols=63 Identities=22% Similarity=0.213 Sum_probs=43.6
Q ss_pred CCceEeeccCCCCCH-----------HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccC
Q psy7187 10 DGGVVCIDEFDKMRE-----------DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDF 78 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~-----------~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l 78 (214)
..+|+||||++.+.. ..+..|+..|+.-. .-+.++.||||+|.... +
T Consensus 105 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~----------~~~~~v~vI~atn~~~~------------l 162 (322)
T 1xwi_A 105 KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG----------VDNDGILVLGATNIPWV------------L 162 (322)
T ss_dssp SSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS----------SCCTTEEEEEEESCTTT------------S
T ss_pred CCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc----------ccCCCEEEEEecCCccc------------C
Confidence 457999999998722 34556666665311 01346889999998532 7
Q ss_pred CCCCCCcccEEEEecC
Q psy7187 79 MPTILSRFDMIFIIKD 94 (214)
Q Consensus 79 ~~~lldRFDL~~~~~~ 94 (214)
.+++++|||..+.+.-
T Consensus 163 d~al~rRf~~~i~i~~ 178 (322)
T 1xwi_A 163 DSAIRRRFEKRIYIPL 178 (322)
T ss_dssp CHHHHHTCCEEEECCC
T ss_pred CHHHHhhcCeEEEeCC
Confidence 7899999998776643
No 50
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.05 E-value=0.00041 Score=60.71 Aligned_cols=60 Identities=23% Similarity=0.268 Sum_probs=44.0
Q ss_pred ceEeeccCCCC-----------CHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCC
Q psy7187 12 GVVCIDEFDKM-----------REDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMP 80 (214)
Q Consensus 12 Gv~~iDE~~~~-----------~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~ 80 (214)
+++||||++.+ +...+..|+..|+... -+.++.||||+|+... |.+
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-----------~~~~v~vIaaTn~~~~------------Ld~ 355 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIVMAATNRPNS------------IDP 355 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC-----------TTSCEEEEEEESCGGG------------BCG
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccc-----------cCCceEEEEecCCccc------------cCH
Confidence 59999999544 3467788999998421 1456899999998522 677
Q ss_pred CCCC--cccEEEEecC
Q psy7187 81 TILS--RFDMIFIIKD 94 (214)
Q Consensus 81 ~lld--RFDL~~~~~~ 94 (214)
.+.+ ||+..+.+..
T Consensus 356 al~r~gRf~~~i~i~~ 371 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGI 371 (489)
T ss_dssp GGGSTTSSCEEEECCC
T ss_pred HHhCCCcCceEEEeCC
Confidence 8877 9998776643
No 51
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.03 E-value=0.0032 Score=50.98 Aligned_cols=54 Identities=26% Similarity=0.393 Sum_probs=43.4
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCccc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFD 87 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFD 87 (214)
+.++|++|||++.++.+.++.|+..|++. |..+.+|.++|... .+.+++.+||.
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~i~~~~~~~------------~l~~~l~sr~~ 154 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMY-------------SKSCRFILSCNYVS------------RIIEPIQSRCA 154 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSS-------------SSSEEEEEEESCGG------------GSCHHHHTTCE
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhc-------------CCCCeEEEEeCChh------------hcchHHHhhCe
Confidence 45789999999999999999999999862 45677888887632 26788899986
No 52
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.99 E-value=0.0024 Score=55.71 Aligned_cols=64 Identities=25% Similarity=0.285 Sum_probs=42.3
Q ss_pred CceEeeccCCCCCH--------------HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccc
Q psy7187 11 GGVVCIDEFDKMRE--------------DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNI 76 (214)
Q Consensus 11 ~Gv~~iDE~~~~~~--------------~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~ 76 (214)
..|+||||++.+.. ..+..|+..|+.- + -+....||+|+|....
T Consensus 109 p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~-------~----~~~~viVIaaTn~~~~----------- 166 (476)
T 2ce7_A 109 PCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGF-------D----SKEGIIVMAATNRPDI----------- 166 (476)
T ss_dssp SEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHS-------C----GGGTEEEEEEESCGGG-----------
T ss_pred CCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhcc-------C----CCCCEEEEEecCChhh-----------
Confidence 35999999988754 2456777777621 0 0346889999998521
Q ss_pred cCCCCCCC--cccEEEEecCCCCc
Q psy7187 77 DFMPTILS--RFDMIFIIKDEHDE 98 (214)
Q Consensus 77 ~l~~~lld--RFDL~~~~~~~~~~ 98 (214)
+.+.++. |||..+.+. .++.
T Consensus 167 -Ld~allR~gRFd~~i~i~-~Pd~ 188 (476)
T 2ce7_A 167 -LDPALLRPGRFDKKIVVD-PPDM 188 (476)
T ss_dssp -SCGGGGSTTSSCEEEECC-CCCH
T ss_pred -hchhhcccCcceeEeecC-CCCH
Confidence 5566664 999877654 3443
No 53
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.99 E-value=0.0023 Score=53.36 Aligned_cols=132 Identities=15% Similarity=0.089 Sum_probs=76.6
Q ss_pred ceEeeccCCCCCHHH-HHH-HHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccEE
Q psy7187 12 GVVCIDEFDKMREDD-RVA-IHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDMI 89 (214)
Q Consensus 12 Gv~~iDE~~~~~~~~-~~~-L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL~ 89 (214)
+|++|||++.+.... .+. +...++.. .++.+|+++|.... ...+.+++++||+..
T Consensus 135 ~vlilDEi~~l~~~~~~~~~l~~l~~~~--------------~~~~iI~~t~~~~~---------~~~l~~~l~sr~~~~ 191 (384)
T 2qby_B 135 AIIYLDEVDTLVKRRGGDIVLYQLLRSD--------------ANISVIMISNDINV---------RDYMEPRVLSSLGPS 191 (384)
T ss_dssp EEEEEETTHHHHHSTTSHHHHHHHHTSS--------------SCEEEEEECSSTTT---------TTTSCHHHHHTCCCE
T ss_pred CEEEEECHHHhccCCCCceeHHHHhcCC--------------cceEEEEEECCCch---------HhhhCHHHHhcCCCe
Confidence 399999999986542 334 44433321 46788888887421 012667788898765
Q ss_pred EEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcC
Q psy7187 90 FIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKED 169 (214)
Q Consensus 90 ~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~ 169 (214)
+.+.. .+.+.-.. ++..+... ..-...+++++.+.+.++...
T Consensus 192 i~l~~-l~~~~~~~----il~~~~~~-------------------------~~~~~~~~~~~~~~i~~~~~~-------- 233 (384)
T 2qby_B 192 VIFKP-YDAEQLKF----ILSKYAEY-------------------------GLIKGTYDDEILSYIAAISAK-------- 233 (384)
T ss_dssp EEECC-CCHHHHHH----HHHHHHHH-------------------------TSCTTSCCSHHHHHHHHHHHT--------
T ss_pred EEECC-CCHHHHHH----HHHHHHHh-------------------------hcccCCcCHHHHHHHHHHHHh--------
Confidence 54433 33222111 22211110 000124677777777665421
Q ss_pred CCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 170 GEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 170 ~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
.+=.+|....+++.|...|. ....|+.+|+..|+.
T Consensus 234 ------~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~ 268 (384)
T 2qby_B 234 ------EHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIV 268 (384)
T ss_dssp ------TCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHH
T ss_pred ------ccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHH
Confidence 01147777788888887877 667899999988864
No 54
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.97 E-value=0.00081 Score=54.76 Aligned_cols=81 Identities=10% Similarity=0.154 Sum_probs=46.1
Q ss_pred CCceEeeccCCCCCH-------------HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccc
Q psy7187 10 DGGVVCIDEFDKMRE-------------DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNI 76 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~-------------~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~ 76 (214)
..+|+||||++++.. .+...|++.|+..+..-........-..+..||+|+|....
T Consensus 99 ~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~----------- 167 (293)
T 3t15_A 99 NMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFST----------- 167 (293)
T ss_dssp SCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC-----------
T ss_pred CCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCccc-----------
Confidence 578999999987654 35588999998654322111111222456899999997532
Q ss_pred cCCCCCC--CcccEEEEecCCCCccccHHHH
Q psy7187 77 DFMPTIL--SRFDMIFIIKDEHDETRDITLA 105 (214)
Q Consensus 77 ~l~~~ll--dRFDL~~~~~~~~~~~~d~~ia 105 (214)
++++++ +|||.++.+ |+.+....|.
T Consensus 168 -ld~al~R~~R~d~~i~~---P~~~~r~~Il 194 (293)
T 3t15_A 168 -LYAPLIRDGRMEKFYWA---PTREDRIGVC 194 (293)
T ss_dssp ---CHHHHHHHEEEEEEC---CCHHHHHHHH
T ss_pred -CCHHHhCCCCCceeEeC---cCHHHHHHHH
Confidence 778888 699987764 3444444443
No 55
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.90 E-value=0.0025 Score=55.32 Aligned_cols=119 Identities=10% Similarity=0.072 Sum_probs=67.7
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccE
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDM 88 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL 88 (214)
+.++|+||| ...+..+.|+.+|+.| ++.+|+|+|+..- ...+.+.++|.+||..
T Consensus 266 ~~~~iLfiD----~~~~a~~~L~~~L~~g---------------~v~vI~at~~~e~-------~~~~~~~~al~~Rf~~ 319 (468)
T 3pxg_A 266 AGNIILFID----AAIDASNILKPSLARG---------------ELQCIGATTLDEY-------RKYIEKDAALERRFQP 319 (468)
T ss_dssp CCCCEEEEC----C--------CCCTTSS---------------SCEEEEECCTTTT-------HHHHTTCSHHHHSEEE
T ss_pred cCCeEEEEe----CchhHHHHHHHhhcCC---------------CEEEEecCCHHHH-------HHHhhcCHHHHHhCcc
Confidence 457899999 4556677788888865 4678999998631 1224578999999974
Q ss_pred EEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccC-CCCCHHHHHHHHHHHHHH
Q psy7187 89 IFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCG-PRLTHEAGEKLKNRYVLM 162 (214)
Q Consensus 89 ~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~-p~ls~ea~~~i~~~y~~~ 162 (214)
+.+ +.++.+....|..+++. ... ......++.+.+.....++..++. ..+++.+.+++...-...
T Consensus 320 -i~v-~~p~~e~~~~iL~~~~~----~~~---~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~ 385 (468)
T 3pxg_A 320 -IQV-DQPSVDESIQILQGLRD----RYE---AHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKV 385 (468)
T ss_dssp -EEC-CCCCHHHHHHHHHHTTT----TSG---GGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHH
T ss_pred -cee-CCCCHHHHHHHHHHHHH----HHH---HhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHH
Confidence 433 44444433333222211 110 123345677788877788777543 346778888886655433
No 56
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.89 E-value=4.6e-05 Score=60.94 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=31.5
Q ss_pred ccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 177 PITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 177 ~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
+.+.|.+..+++-|...|....++.|+.+|+.+|+.
T Consensus 216 g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 251 (268)
T 2r62_A 216 GLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVE 251 (268)
T ss_dssp SSCHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCT
T ss_pred CCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 567789999999999999888889999999998864
No 57
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.02 Score=49.07 Aligned_cols=129 Identities=16% Similarity=0.222 Sum_probs=78.8
Q ss_pred ceEeeccCCCCCH--------------HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCccccccc
Q psy7187 12 GVVCIDEFDKMRE--------------DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNID 77 (214)
Q Consensus 12 Gv~~iDE~~~~~~--------------~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~ 77 (214)
.|+||||++.+-. .++..|+.-|+.-. -..+..||||+|-...
T Consensus 277 ~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~-----------~~~~ViVIaATNrpd~------------ 333 (437)
T 4b4t_I 277 SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD-----------DRGDVKVIMATNKIET------------ 333 (437)
T ss_dssp EEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC-----------CSSSEEEEEEESCSTT------------
T ss_pred cEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC-----------CCCCEEEEEeCCChhh------------
Confidence 6899999997522 23445666565210 1234788999987543
Q ss_pred CCCCCCC--cccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHH
Q psy7187 78 FMPTILS--RFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKL 155 (214)
Q Consensus 78 l~~~lld--RFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i 155 (214)
|.++|+- |||..+.+. .++.+.. ..|++.+...... ...++ .+.|
T Consensus 334 LDpALlRpGRfD~~I~v~-lPd~~~R----~~Il~~~l~~~~l-----~~dvd-----------------------l~~L 380 (437)
T 4b4t_I 334 LDPALIRPGRIDRKILFE-NPDLSTK----KKILGIHTSKMNL-----SEDVN-----------------------LETL 380 (437)
T ss_dssp CCTTSSCTTTEEEEECCC-CCCHHHH----HHHHHHHHTTSCB-----CSCCC-----------------------HHHH
T ss_pred cCHHHhcCCceeEEEEcC-CcCHHHH----HHHHHHHhcCCCC-----CCcCC-----------------------HHHH
Confidence 8888886 999887653 4443332 3455555432110 01111 1111
Q ss_pred HHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 156 KNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 156 ~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
.+ + ..++|.+.+..+++-|.-.|--+.+..|+.+|+..|+.
T Consensus 381 A~-----~-----------T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~ 421 (437)
T 4b4t_I 381 VT-----T-----------KDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKE 421 (437)
T ss_dssp HH-----H-----------CCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred HH-----h-----------CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 11 0 13567788888888887777778889999999999974
No 58
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.83 E-value=0.0035 Score=52.23 Aligned_cols=145 Identities=8% Similarity=-0.037 Sum_probs=83.4
Q ss_pred eEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccEEEEe
Q psy7187 13 VVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDMIFII 92 (214)
Q Consensus 13 v~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL~~~~ 92 (214)
|++|||++.++.+.+..|...+++.. ..+ +.++.+|+++|... ....+.+++.+||....+.
T Consensus 128 vlilDE~~~l~~~~~~~L~~~~~~~~----~~~-----~~~~~iI~~~~~~~---------~~~~l~~~~~~r~~~~~i~ 189 (389)
T 1fnn_A 128 FLVLDDAFNLAPDILSTFIRLGQEAD----KLG-----AFRIALVIVGHNDA---------VLNNLDPSTRGIMGKYVIR 189 (389)
T ss_dssp EEEEETGGGSCHHHHHHHHHHTTCHH----HHS-----SCCEEEEEEESSTH---------HHHTSCHHHHHHHTTCEEE
T ss_pred EEEEECccccchHHHHHHHHHHHhCC----CCC-----cCCEEEEEEECCch---------HHHHhCHHhhhcCCCceEE
Confidence 89999999999999999999887521 000 13567777776531 0012556666777642222
Q ss_pred cCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCC
Q psy7187 93 KDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEK 172 (214)
Q Consensus 93 ~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~ 172 (214)
..+.+.+ .+.+.+ ... +..+. ....+++++.+.+.+... +....
T Consensus 190 ~~pl~~~---~~~~~l-~~~-----------------------~~~~~--~~~~~~~~~~~~l~~~~~--~~~~~----- 233 (389)
T 1fnn_A 190 FSPYTKD---QIFDIL-LDR-----------------------AKAGL--AEGSYSEDILQMIADITG--AQTPL----- 233 (389)
T ss_dssp CCCCBHH---HHHHHH-HHH-----------------------HHHHB--CTTSSCHHHHHHHHHHHS--BSSTT-----
T ss_pred eCCCCHH---HHHHHH-HHH-----------------------HHhhc--CCCCCCHHHHHHHHHHHh--hcccC-----
Confidence 2222221 111111 111 10000 012467777777765431 00000
Q ss_pred ccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 173 KLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 173 ~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
...+=.+|.+..+++.|...|..+.+..|+.+|+..|+.
T Consensus 234 -~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 234 -DTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp -CTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred -CCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 000125888899999999999888889999999998864
No 59
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.80 E-value=0.0051 Score=52.98 Aligned_cols=133 Identities=12% Similarity=0.120 Sum_probs=80.1
Q ss_pred CCceEeeccCCCCCH--HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCccc
Q psy7187 10 DGGVVCIDEFDKMRE--DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFD 87 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~--~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFD 87 (214)
..+|++|||++.+.. ..++.|+..|+.-. ..| ...|+++.||... ...+.+.|++||+
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~----~~~-------~~iIitt~~~~~~---------l~~l~~~L~sR~~ 253 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELH----DSG-------KQIVICSDREPQK---------LSEFQDRLVSRFQ 253 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHH----TTT-------CEEEEEESSCGGG---------CSSCCHHHHHHHH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHH----HCC-------CeEEEEECCCHHH---------HHHHHHHHHhhcc
Confidence 578999999999876 56777777765311 011 1344555554311 1126678888886
Q ss_pred --EEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcC
Q psy7187 88 --MIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNG 165 (214)
Q Consensus 88 --L~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~ 165 (214)
+++.+.. ++.+... .++.. + ++. ....+++++.++|....
T Consensus 254 ~g~~i~l~~-p~~e~r~----~iL~~-----------------------~---~~~-~~~~i~~e~l~~la~~~------ 295 (440)
T 2z4s_A 254 MGLVAKLEP-PDEETRK----SIARK-----------------------M---LEI-EHGELPEEVLNFVAENV------ 295 (440)
T ss_dssp SSBCCBCCC-CCHHHHH----HHHHH-----------------------H---HHH-HTCCCCTTHHHHHHHHC------
T ss_pred CCeEEEeCC-CCHHHHH----HHHHH-----------------------H---HHH-cCCCCCHHHHHHHHHhc------
Confidence 4443322 2222111 12211 1 111 12357788877775431
Q ss_pred CCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 166 SKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 166 ~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
+=++|.++.+++.+.+.|.+.++ .|+.+++.+|+.
T Consensus 296 -----------~gn~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~ 330 (440)
T 2z4s_A 296 -----------DDNLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLK 330 (440)
T ss_dssp -----------CSCHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTS
T ss_pred -----------CCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence 12689999999999999988875 699999998864
No 60
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.016 Score=49.82 Aligned_cols=130 Identities=20% Similarity=0.264 Sum_probs=78.6
Q ss_pred CceEeeccCCCCC-----------H---HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccc
Q psy7187 11 GGVVCIDEFDKMR-----------E---DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNI 76 (214)
Q Consensus 11 ~Gv~~iDE~~~~~-----------~---~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~ 76 (214)
.-|+||||++.+- . .....|+..|+.-. + ..+..||||+|-...
T Consensus 275 P~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~------~-----~~~ViVIaaTNrp~~----------- 332 (434)
T 4b4t_M 275 PTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS------S-----DDRVKVLAATNRVDV----------- 332 (434)
T ss_dssp SEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC------S-----SCSSEEEEECSSCCC-----------
T ss_pred CeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC------C-----CCCEEEEEeCCCchh-----------
Confidence 3589999998641 1 13445666665210 0 224688999987543
Q ss_pred cCCCCCCC--cccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHH
Q psy7187 77 DFMPTILS--RFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEK 154 (214)
Q Consensus 77 ~l~~~lld--RFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~ 154 (214)
|.++|+. |||..+.+. .|+.+.. ..|++.+..... ....++. +.
T Consensus 333 -LD~AllRpGRfD~~I~i~-lPd~~~R----~~Il~~~~~~~~-----~~~dvdl-----------------------~~ 378 (434)
T 4b4t_M 333 -LDPALLRSGRLDRKIEFP-LPSEDSR----AQILQIHSRKMT-----TDDDINW-----------------------QE 378 (434)
T ss_dssp -CCTTTCSTTSEEEEEECC-CCCHHHH----HHHHHHHHHHSC-----BCSCCCH-----------------------HH
T ss_pred -cCHhHhcCCceeEEEEeC-CcCHHHH----HHHHHHHhcCCC-----CCCcCCH-----------------------HH
Confidence 8889977 999988874 3454333 334554433211 0111111 11
Q ss_pred HHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 155 LKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 155 i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
|.+ + ..++|.+.+..+++-|.-.|--+.+..|+.+|+.+|+.
T Consensus 379 lA~-----~-----------t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~ 420 (434)
T 4b4t_M 379 LAR-----S-----------TDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGIS 420 (434)
T ss_dssp HHH-----H-----------CSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred HHH-----h-----------CCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 111 0 13467777888888777777777888999999999975
No 61
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.019 Score=48.88 Aligned_cols=129 Identities=12% Similarity=0.143 Sum_probs=78.8
Q ss_pred ceEeeccCCCCCH--------------HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCccccccc
Q psy7187 12 GVVCIDEFDKMRE--------------DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNID 77 (214)
Q Consensus 12 Gv~~iDE~~~~~~--------------~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~ 77 (214)
.|+||||++.+-. .++..|+.-|+.-. + ..+..||||+|-...
T Consensus 243 ~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~------~-----~~~V~vIaATNrpd~------------ 299 (405)
T 4b4t_J 243 SIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE------T-----SKNIKIIMATNRLDI------------ 299 (405)
T ss_dssp EEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT------C-----CCCEEEEEEESCSSS------------
T ss_pred ceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC------C-----CCCeEEEeccCChhh------------
Confidence 6899999998632 14556666675210 0 224678999987533
Q ss_pred CCCCCCC--cccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHH
Q psy7187 78 FMPTILS--RFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKL 155 (214)
Q Consensus 78 l~~~lld--RFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i 155 (214)
|.++|+- |||..+.+.- |+.+.. ..|++.+..... ....++ .+.|
T Consensus 300 LDpAllRpGRfD~~I~i~l-Pd~~~R----~~Il~~~~~~~~-----l~~dvd-----------------------l~~l 346 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEFPP-PSVAAR----AEILRIHSRKMN-----LTRGIN-----------------------LRKV 346 (405)
T ss_dssp SCHHHHSTTSSCCEEECCC-CCHHHH----HHHHHHHHTTSB-----CCSSCC-----------------------HHHH
T ss_pred CCHhHcCCCcCceEEEcCC-cCHHHH----HHHHHHHhcCCC-----CCccCC-----------------------HHHH
Confidence 7788875 9998888743 443332 345555543211 001111 1111
Q ss_pred HHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 156 KNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 156 ~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
.+ + ..+.|.+.+..+++-|.-.|--+.+..|+.+|+..|+.
T Consensus 347 A~-----~-----------t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~ 387 (405)
T 4b4t_J 347 AE-----K-----------MNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVG 387 (405)
T ss_dssp HH-----H-----------CCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred HH-----H-----------CCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 11 0 13467777888888777777667888999999999874
No 62
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.75 E-value=0.0059 Score=52.63 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=44.6
Q ss_pred CCceEeeccCCCCC-----------HHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccC
Q psy7187 10 DGGVVCIDEFDKMR-----------EDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDF 78 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~-----------~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l 78 (214)
..+|+||||++.+. ...++.|+..|+.-. .-+.++.||+|+|+.. .+
T Consensus 227 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~----------~~~~~v~vI~atn~~~------------~l 284 (444)
T 2zan_A 227 KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG----------VDNDGILVLGATNIPW------------VL 284 (444)
T ss_dssp CSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS----------CCCSSCEEEEEESCGG------------GS
T ss_pred CCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc----------cCCCCEEEEecCCCcc------------cc
Confidence 45899999999983 245666777776421 0145689999999852 27
Q ss_pred CCCCCCcccEEEEec
Q psy7187 79 MPTILSRFDMIFIIK 93 (214)
Q Consensus 79 ~~~lldRFDL~~~~~ 93 (214)
.+++++|||.++.+.
T Consensus 285 d~al~rRf~~~i~i~ 299 (444)
T 2zan_A 285 DSAIRRRFEKRIYIP 299 (444)
T ss_dssp CHHHHTTCCEEEECC
T ss_pred CHHHHhhcceEEEeC
Confidence 789999999877664
No 63
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.044 Score=47.14 Aligned_cols=130 Identities=17% Similarity=0.187 Sum_probs=78.8
Q ss_pred CceEeeccCCCCCH--------------HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccc
Q psy7187 11 GGVVCIDEFDKMRE--------------DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNI 76 (214)
Q Consensus 11 ~Gv~~iDE~~~~~~--------------~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~ 76 (214)
..|+||||++.+-. .++..|+.-|+.-. + .....||||+|-...
T Consensus 275 P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~------~-----~~~vivI~ATNrp~~----------- 332 (437)
T 4b4t_L 275 PCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD------N-----LGQTKIIMATNRPDT----------- 332 (437)
T ss_dssp SEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS------C-----TTSSEEEEEESSTTS-----------
T ss_pred CceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc------C-----CCCeEEEEecCCchh-----------
Confidence 46899999997531 23456777776311 0 124678999986532
Q ss_pred cCCCCCCC--cccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHH
Q psy7187 77 DFMPTILS--RFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEK 154 (214)
Q Consensus 77 ~l~~~lld--RFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~ 154 (214)
|.++|+- |||..+.+. .|+.... ..|++.+...... ...++. ..
T Consensus 333 -LDpAllRpGRfD~~I~i~-lPd~~~R----~~Il~~~~~~~~~-----~~d~dl-----------------------~~ 378 (437)
T 4b4t_L 333 -LDPALLRPGRLDRKVEIP-LPNEAGR----LEIFKIHTAKVKK-----TGEFDF-----------------------EA 378 (437)
T ss_dssp -SCTTTTSTTSEEEEECCC-CCCHHHH----HHHHHHHHHTSCB-----CSCCCH-----------------------HH
T ss_pred -hCHHHhCCCccceeeecC-CcCHHHH----HHHHHHHhcCCCC-----CcccCH-----------------------HH
Confidence 7888875 599888764 3444333 3455544432111 011111 11
Q ss_pred HHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 155 LKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 155 i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
|.+ + ..++|.+.+..+++-|.-.|--+.++.|+.+|+..|+.
T Consensus 379 lA~-----~-----------t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~ 420 (437)
T 4b4t_L 379 AVK-----M-----------SDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVR 420 (437)
T ss_dssp HHH-----T-----------CCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHH-----h-----------CCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 110 0 13567778888888887777778888999999998874
No 64
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.0036 Score=53.77 Aligned_cols=130 Identities=19% Similarity=0.197 Sum_probs=79.2
Q ss_pred ceEeeccCCCCC--------------HHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCccccccc
Q psy7187 12 GVVCIDEFDKMR--------------EDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNID 77 (214)
Q Consensus 12 Gv~~iDE~~~~~--------------~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~ 77 (214)
.|+|+||++.+- ..++..|+..|+.-. + ..+..||||+|-...
T Consensus 267 ~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~------~-----~~~v~vI~aTN~~~~------------ 323 (428)
T 4b4t_K 267 SIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD------Q-----STNVKVIMATNRADT------------ 323 (428)
T ss_dssp EEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC------S-----SCSEEEEEEESCSSS------------
T ss_pred CeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC------C-----CCCEEEEEecCChhh------------
Confidence 689999997531 124566777776310 0 124678999986532
Q ss_pred CCCCCCC--cccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCCCCCHHHHHHH
Q psy7187 78 FMPTILS--RFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKL 155 (214)
Q Consensus 78 l~~~lld--RFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i 155 (214)
|.++|+- |||..+.+.+.++..... .|++.+..... . .+.+. .+.|
T Consensus 324 LD~AllRpGRfd~~I~~p~lPd~~~R~----~Il~~~~~~~~-----l--------------------~~~~d---l~~l 371 (428)
T 4b4t_K 324 LDPALLRPGRLDRKIEFPSLRDRRERR----LIFGTIASKMS-----L--------------------APEAD---LDSL 371 (428)
T ss_dssp CCHHHHSSSSEEEEEECCSSCCHHHHH----HHHHHHHHSSC-----B--------------------CTTCC---HHHH
T ss_pred cChhhhcCCcceEEEEcCCCCCHHHHH----HHHHHHhcCCC-----C--------------------CcccC---HHHH
Confidence 7788875 999988886666654333 34444433211 0 11111 1111
Q ss_pred HHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 156 KNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 156 ~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
.. + ..++|.+.+..+++-|.-.|--+.+..|+.+|+.+|+.
T Consensus 372 A~-----~-----------t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~ 412 (428)
T 4b4t_K 372 II-----R-----------NDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYA 412 (428)
T ss_dssp HH-----H-----------TTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HH-----H-----------CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Confidence 11 1 13467777888888777777777888999999999863
No 65
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.63 E-value=0.0074 Score=52.89 Aligned_cols=62 Identities=27% Similarity=0.323 Sum_probs=40.6
Q ss_pred ceEeeccCCCCCH--------------HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCccccccc
Q psy7187 12 GVVCIDEFDKMRE--------------DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNID 77 (214)
Q Consensus 12 Gv~~iDE~~~~~~--------------~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~ 77 (214)
+++||||++.+.. ..++.|+..|+.+. -+....++|++|... .
T Consensus 125 ~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~-----------~~~~viviAatn~p~------------~ 181 (499)
T 2dhr_A 125 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KDTAIVVMAATNRPD------------I 181 (499)
T ss_dssp CEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC-----------SSCCCEEEECCSCGG------------G
T ss_pred CEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc-----------cCccEEEEEecCChh------------h
Confidence 7999999987642 23456666665332 133477888888742 1
Q ss_pred CCCCCCC--cccEEEEecCCCC
Q psy7187 78 FMPTILS--RFDMIFIIKDEHD 97 (214)
Q Consensus 78 l~~~lld--RFDL~~~~~~~~~ 97 (214)
|.++++. |||..+.+. .++
T Consensus 182 LD~aLlr~gRfdr~i~i~-~Pd 202 (499)
T 2dhr_A 182 LDPALLRPGRFDRQIAID-APD 202 (499)
T ss_dssp SCTTTSSTTSSCCEEECC-CCC
T ss_pred cCcccccccccceEEecC-CCC
Confidence 7788887 899877663 344
No 66
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.58 E-value=0.036 Score=45.83 Aligned_cols=52 Identities=25% Similarity=0.209 Sum_probs=39.4
Q ss_pred CCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcc
Q psy7187 10 DGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRF 86 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRF 86 (214)
..+|++|||++.++.+..+.|+..|++ .|..+.+|.++|-.. .+.+.+.+|+
T Consensus 119 ~~~vliiDe~~~l~~~~~~~Ll~~le~-------------~~~~~~~Il~~~~~~------------~l~~~l~sr~ 170 (373)
T 1jr3_A 119 RFKVYLIDEVHMLSRHSFNALLKTLEE-------------PPEHVKFLLATTDPQ------------KLPVTILSRC 170 (373)
T ss_dssp SSEEEEEECGGGSCHHHHHHHHHHHHS-------------CCSSEEEEEEESCGG------------GSCHHHHTTS
T ss_pred CeEEEEEECcchhcHHHHHHHHHHHhc-------------CCCceEEEEEeCChH------------hCcHHHHhhe
Confidence 457999999999999999999999986 245566676665321 2566788887
No 67
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.33 E-value=0.021 Score=47.22 Aligned_cols=137 Identities=15% Similarity=0.053 Sum_probs=78.3
Q ss_pred CceEeeccCCCCC----HHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcc
Q psy7187 11 GGVVCIDEFDKMR----EDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRF 86 (214)
Q Consensus 11 ~Gv~~iDE~~~~~----~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRF 86 (214)
..|++|||++.+. .+.+..|...+++. -+.++.+|+++|...- ...+...+.+||
T Consensus 129 ~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~------------~~~~~~~I~~~~~~~~---------~~~~~~~~~~r~ 187 (386)
T 2qby_A 129 QVVIVLDEIDAFVKKYNDDILYKLSRINSEV------------NKSKISFIGITNDVKF---------VDLLDPRVKSSL 187 (386)
T ss_dssp CEEEEEETHHHHHHSSCSTHHHHHHHHHHSC------------CC--EEEEEEESCGGG---------GGGCTTHHHHTT
T ss_pred eEEEEEcChhhhhccCcCHHHHHHhhchhhc------------CCCeEEEEEEECCCCh---------HhhhCHHHhccC
Confidence 4589999999875 45666777777543 0234667777775310 112556667777
Q ss_pred cEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhcc-CCCCCHHHHHHHHHHHHHHhcC
Q psy7187 87 DMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRC-GPRLTHEAGEKLKNRYVLMRNG 165 (214)
Q Consensus 87 DL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~-~p~ls~ea~~~i~~~y~~~r~~ 165 (214)
....+...+.+.+.-.. ++.... .... ...+++++.+++.++... .
T Consensus 188 ~~~~i~l~~l~~~~~~~----il~~~~--------------------------~~~~~~~~~~~~~~~~l~~~~~~--~- 234 (386)
T 2qby_A 188 SEEEIIFPPYNAEELED----ILTKRA--------------------------QMAFKPGVLPDNVIKLCAALAAR--E- 234 (386)
T ss_dssp TTEEEEECCCCHHHHHH----HHHHHH--------------------------HHHBCSSCSCHHHHHHHHHHHHH--T-
T ss_pred CCeeEEeCCCCHHHHHH----HHHHHH--------------------------HhhccCCCCCHHHHHHHHHHHHH--h-
Confidence 53222223333221111 111111 0001 124677777777665421 0
Q ss_pred CCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 166 SKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 166 ~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
.=.+|.+..+++.+...|...++..|+.+|+..|+.
T Consensus 235 -----------~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~ 270 (386)
T 2qby_A 235 -----------HGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKE 270 (386)
T ss_dssp -----------TCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred -----------cCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 014777777888888888888888999999998864
No 68
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.30 E-value=0.019 Score=47.39 Aligned_cols=58 Identities=21% Similarity=0.296 Sum_probs=43.8
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccE
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDM 88 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL 88 (214)
+...|++|||++.|+.+.+++|+..||+. |..+.++.++|+.. .+.+++.+|+.
T Consensus 109 ~~~~viiiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~il~~n~~~------------~i~~~i~sR~~- 162 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAAQNALRRVIERY-------------TKNTRFCVLANYAH------------KLTPALLSQCT- 162 (340)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGG------------GSCHHHHTTSE-
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhcC-------------CCCeEEEEEecCcc------------ccchhHHhhce-
Confidence 35789999999999999999999999974 23455666677642 27788999985
Q ss_pred EEEe
Q psy7187 89 IFII 92 (214)
Q Consensus 89 ~~~~ 92 (214)
.+.+
T Consensus 163 ~~~~ 166 (340)
T 1sxj_C 163 RFRF 166 (340)
T ss_dssp EEEC
T ss_pred eEec
Confidence 4443
No 69
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.28 E-value=0.008 Score=49.20 Aligned_cols=66 Identities=11% Similarity=0.157 Sum_probs=39.8
Q ss_pred cCCceEeeccCCCCCH--HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcc
Q psy7187 9 ADGGVVCIDEFDKMRE--DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRF 86 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~--~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRF 86 (214)
.+.+|++|||++.++. ..++.++..++... ..| ...|+++.||.. +...+.+.|++||
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~----~~~-------~~iii~~~~~~~---------~l~~l~~~L~sR~ 156 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLY----LLE-------KQIILASDRHPQ---------KLDGVSDRLVSRF 156 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHH----HTT-------CEEEEEESSCGG---------GCTTSCHHHHHHH
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHH----HCC-------CeEEEEecCChH---------HHHHhhhHhhhcc
Confidence 3578999999999886 55666666654210 011 134455555532 1113778899999
Q ss_pred c--EEEEecC
Q psy7187 87 D--MIFIIKD 94 (214)
Q Consensus 87 D--L~~~~~~ 94 (214)
+ +++.+..
T Consensus 157 ~~~~~i~l~~ 166 (324)
T 1l8q_A 157 EGGILVEIEL 166 (324)
T ss_dssp HTSEEEECCC
T ss_pred cCceEEEeCC
Confidence 7 6665543
No 70
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.04 Score=47.68 Aligned_cols=36 Identities=17% Similarity=0.096 Sum_probs=28.7
Q ss_pred ccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 177 PITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 177 ~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
++|.+.+..+++-|.-.|--+.+..|+.+|+..|+.
T Consensus 413 GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~ 448 (467)
T 4b4t_H 413 NSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVD 448 (467)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 457777888888777777777888999999998874
No 71
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.22 E-value=0.011 Score=46.63 Aligned_cols=35 Identities=17% Similarity=0.054 Sum_probs=30.4
Q ss_pred ccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHH
Q psy7187 177 PITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEAL 211 (214)
Q Consensus 177 ~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai 211 (214)
+.+.|.++.+++-|...|..+.+..|+.+|+.+|+
T Consensus 219 G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 219 GFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 45778899999988888888888899999999986
No 72
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.21 E-value=0.036 Score=51.63 Aligned_cols=122 Identities=14% Similarity=0.144 Sum_probs=68.5
Q ss_pred CceEeeccCCCCC--------HHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCC
Q psy7187 11 GGVVCIDEFDKMR--------EDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTI 82 (214)
Q Consensus 11 ~Gv~~iDE~~~~~--------~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~l 82 (214)
..|+||||++.+. .+..+.|...|+.+ ++.+|+++|+... ..+.+.++|
T Consensus 264 ~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~---------------~i~~I~at~~~~~--------~~~~~d~aL 320 (854)
T 1qvr_A 264 EVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG---------------ELRLIGATTLDEY--------REIEKDPAL 320 (854)
T ss_dssp SEEEEECCC-------------------HHHHHTT---------------CCCEEEEECHHHH--------HHHTTCTTT
T ss_pred CeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC---------------CeEEEEecCchHH--------hhhccCHHH
Confidence 3599999999987 45556778888764 3557888887421 014478999
Q ss_pred CCcccEEEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccCC-CCCHHHHHHHHHHHHH
Q psy7187 83 LSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCGP-RLTHEAGEKLKNRYVL 161 (214)
Q Consensus 83 ldRFDL~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p-~ls~ea~~~i~~~y~~ 161 (214)
.+||+. +.+ +.++.+....+.+.++...... ..-.++.+.+.....+++.++.. .+++.+.+++......
T Consensus 321 ~rRf~~-i~l-~~p~~~e~~~iL~~~~~~~~~~-------~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~ 391 (854)
T 1qvr_A 321 ERRFQP-VYV-DEPTVEETISILRGLKEKYEVH-------HGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAAR 391 (854)
T ss_dssp CSCCCC-EEE-CCCCHHHHHHHHHHHHHHHHHH-------TTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHH
T ss_pred HhCCce-EEe-CCCCHHHHHHHHHhhhhhhhhh-------cCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHH
Confidence 999996 444 4445444445544444433221 22345677777777877776543 3456777777776655
Q ss_pred Hhc
Q psy7187 162 MRN 164 (214)
Q Consensus 162 ~r~ 164 (214)
.+.
T Consensus 392 ~~~ 394 (854)
T 1qvr_A 392 LRM 394 (854)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 73
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.14 E-value=0.045 Score=44.13 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=41.2
Q ss_pred CCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCccc
Q psy7187 10 DGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFD 87 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFD 87 (214)
...|++|||++.++.+..+.|+..|++. |..+.+|.++|+.. .+.+++.+|+.
T Consensus 107 ~~~viiiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~il~~~~~~------------~l~~~l~sr~~ 159 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGAQQALRRTMELY-------------SNSTRFAFACNQSN------------KIIEPLQSQCA 159 (323)
T ss_dssp CCEEEEEESGGGSCHHHHHTTHHHHHHT-------------TTTEEEEEEESCGG------------GSCHHHHTTSE
T ss_pred CceEEEEECcccCCHHHHHHHHHHHhcc-------------CCCceEEEEeCChh------------hchhHHHhhce
Confidence 3679999999999999999999999863 34566777776632 26778889986
No 74
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.04 E-value=0.035 Score=50.94 Aligned_cols=119 Identities=11% Similarity=0.067 Sum_probs=68.0
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccE
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDM 88 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL 88 (214)
+.++|+||| ...+..+.|+.+|+.| .+.+|+|+|+..- ...+.+.++|.+||..
T Consensus 266 ~~~~iLfiD----~~~~~~~~L~~~l~~~---------------~v~~I~at~~~~~-------~~~~~~d~al~rRf~~ 319 (758)
T 3pxi_A 266 AGNIILFID----AAIDASNILKPSLARG---------------ELQCIGATTLDEY-------RKYIEKDAALERRFQP 319 (758)
T ss_dssp CCCCEEEEC----C--------CCCTTSS---------------SCEEEEECCTTTT-------HHHHTTCSHHHHSEEE
T ss_pred cCCEEEEEc----CchhHHHHHHHHHhcC---------------CEEEEeCCChHHH-------HHHhhccHHHHhhCcE
Confidence 567899999 4556777888888855 3678999999631 1223588999999953
Q ss_pred EEEecCCCCccccHHHHHHHHHHHHhhcccCCcCCCCCCChHHHHHHHHHhHhccC-CCCCHHHHHHHHHHHHHH
Q psy7187 89 IFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLPVLKKYINYCRMRCG-PRLTHEAGEKLKNRYVLM 162 (214)
Q Consensus 89 ~~~~~~~~~~~~d~~ia~~il~~~~~~~~~~~~~~~~~l~~~~l~~~i~~ar~~~~-p~ls~ea~~~i~~~y~~~ 162 (214)
+.+ +.++.+.... |+........ ......++.+.+.....++..++. ..+++.+.+++.......
T Consensus 320 -i~v-~~p~~~~~~~----il~~~~~~~~---~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~ 385 (758)
T 3pxi_A 320 -IQV-DQPSVDESIQ----ILQGLRDRYE---AHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKV 385 (758)
T ss_dssp -EEC-CCCCHHHHHH----HHHHTTTTSG---GGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHH
T ss_pred -EEe-CCCCHHHHHH----HHHHHHHHHH---HhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHH
Confidence 444 4444433333 3332211110 122345777888888888877654 345677788877665433
No 75
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.96 E-value=0.0094 Score=47.77 Aligned_cols=36 Identities=17% Similarity=0.051 Sum_probs=30.9
Q ss_pred ccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 177 PITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 177 ~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
+.+.|.++.+++-|...|..+.+..|+.+|+.+|+.
T Consensus 243 G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 243 GFVGADLENLLNEAALLAAREGRRKITMKDLEEAAS 278 (278)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHhC
Confidence 457788999999888888888888999999999863
No 76
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.64 E-value=0.011 Score=47.08 Aligned_cols=63 Identities=8% Similarity=0.151 Sum_probs=41.8
Q ss_pred cCCceEeeccCCCC----------CHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccC
Q psy7187 9 ADGGVVCIDEFDKM----------REDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDF 78 (214)
Q Consensus 9 a~~Gv~~iDE~~~~----------~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l 78 (214)
+.++|++|||++.+ ....++.|.+.|+... ..+.++.|++|+|+... +
T Consensus 123 ~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~----------~~~~~~~ii~ttn~~~~------------l 180 (272)
T 1d2n_A 123 SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAP----------PQGRKLLIIGTTSRKDV------------L 180 (272)
T ss_dssp SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCC----------STTCEEEEEEEESCHHH------------H
T ss_pred cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCcc----------CCCCCEEEEEecCChhh------------c
Confidence 45799999999886 5556666666665310 11345778999988421 3
Q ss_pred CC-CCCCcccEEEEec
Q psy7187 79 MP-TILSRFDMIFIIK 93 (214)
Q Consensus 79 ~~-~lldRFDL~~~~~ 93 (214)
.. .+.+||+..+.+.
T Consensus 181 ~~~~l~~rf~~~i~~p 196 (272)
T 1d2n_A 181 QEMEMLNAFSTTIHVP 196 (272)
T ss_dssp HHTTCTTTSSEEEECC
T ss_pred chhhhhcccceEEcCC
Confidence 33 6789999887663
No 77
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.20 E-value=0.041 Score=44.60 Aligned_cols=65 Identities=25% Similarity=0.278 Sum_probs=44.3
Q ss_pred CceEeeccCCCCCHH--------------HHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccc
Q psy7187 11 GGVVCIDEFDKMRED--------------DRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNI 76 (214)
Q Consensus 11 ~Gv~~iDE~~~~~~~--------------~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~ 76 (214)
.+|+||||++.+... .+..|+..|+.-. -+.+..||||+|....
T Consensus 109 p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~-----------~~~~v~vi~atn~~~~----------- 166 (301)
T 3cf0_A 109 PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----------TKKNVFIIGATNRPDI----------- 166 (301)
T ss_dssp SEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-----------TTSSEEEEEEESCGGG-----------
T ss_pred CeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc-----------CCCCEEEEEecCCccc-----------
Confidence 489999999975432 4577888887311 1346889999998522
Q ss_pred cCCCCCCC--cccEEEEecCCCCcc
Q psy7187 77 DFMPTILS--RFDMIFIIKDEHDET 99 (214)
Q Consensus 77 ~l~~~lld--RFDL~~~~~~~~~~~ 99 (214)
+.++++. |||..+.+.. ++..
T Consensus 167 -ld~al~r~gRf~~~i~i~~-p~~~ 189 (301)
T 3cf0_A 167 -IDPAILRPGRLDQLIYIPL-PDEK 189 (301)
T ss_dssp -SCGGGGSTTSSCEEEECCC-CCHH
T ss_pred -cChHHhcCCccceEEecCC-cCHH
Confidence 6777887 9997776643 4443
No 78
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=92.59 E-value=0.64 Score=32.01 Aligned_cols=65 Identities=12% Similarity=0.046 Sum_probs=46.5
Q ss_pred CCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcH
Q psy7187 125 GELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAID 204 (214)
Q Consensus 125 ~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~ 204 (214)
..++...+++....+- ...+|+++...+.+.... .++.+.+-|.+.|+=.+|++|+.
T Consensus 6 ~~lP~a~I~Ri~r~~g---~~rIS~~a~~~l~e~l~~--------------------f~~~v~~da~~~A~HA~RKTV~~ 62 (111)
T 3b0c_T 6 PEIASSLIKQIFSHYV---KTPVTRDAYKIVEKCSER--------------------YFKQISSDLEAYSQHAGRKTVEM 62 (111)
T ss_dssp ----CHHHHHHHHHHH---CSCBCHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHTTCSEECH
T ss_pred CCCCHHHHHHHHHHCC---CCccCHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHcCCCcCCH
Confidence 3566667776554332 346898888887765432 36788999999999999999999
Q ss_pred HHHHHHHh
Q psy7187 205 SHVTEALR 212 (214)
Q Consensus 205 ~Dv~~Ai~ 212 (214)
+||..|++
T Consensus 63 eDV~lalr 70 (111)
T 3b0c_T 63 ADVELLMR 70 (111)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 79
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=92.43 E-value=0.59 Score=29.79 Aligned_cols=66 Identities=18% Similarity=0.204 Sum_probs=49.1
Q ss_pred CCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHH
Q psy7187 126 ELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDS 205 (214)
Q Consensus 126 ~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~ 205 (214)
.+|...+++.+.-+-- ...++++|...+...+... ++.|..-|..+|+-..|.+|+.+
T Consensus 4 ~LP~A~V~rI~K~~~p--~~~is~~A~~~i~~~~~~F--------------------i~~la~eA~~~a~~~~rKTI~~~ 61 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHKP--HLRLAANTDLLVHLSFLLF--------------------LHRLAEEARTNAFENKSKIIKPE 61 (76)
T ss_dssp CCCHHHHHHHHHHHCT--TCEECTTHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHTCSSBCHH
T ss_pred cccccHHHHHHHHhCC--CCccCHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHcCCCCCCHH
Confidence 5677777777653321 1247889998888877542 45667777889999999999999
Q ss_pred HHHHHHhc
Q psy7187 206 HVTEALRL 213 (214)
Q Consensus 206 Dv~~Ai~l 213 (214)
||..|++.
T Consensus 62 dI~~A~~~ 69 (76)
T 3b0c_W 62 HTIAAAKV 69 (76)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999864
No 80
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=92.39 E-value=0.79 Score=28.61 Aligned_cols=64 Identities=17% Similarity=0.205 Sum_probs=47.1
Q ss_pred CCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHH
Q psy7187 126 ELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDS 205 (214)
Q Consensus 126 ~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~ 205 (214)
.+|...+++.+.-+- .-.+++++...+.+.-. +.++.+++-|...|.=.+|.+|+.+
T Consensus 6 ~lp~a~v~Rl~r~~g---~~ris~~a~~~l~e~~~--------------------~~~~~v~~dA~~~a~hakRkTI~~~ 62 (70)
T 1ku5_A 6 ELPIAPVDRLIRKAG---AERVSEQAAKVLAEYLE--------------------EYAIEIAKKAVEFARHAGRKTVKVE 62 (70)
T ss_dssp CSCHHHHHHHHHHTT---CSEECHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHTTTCSEECHH
T ss_pred cCChHHHHHHHHHcC---cceeCHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHcCCCcCCHH
Confidence 456666666654331 23578888777766542 3367889999999999999999999
Q ss_pred HHHHHHh
Q psy7187 206 HVTEALR 212 (214)
Q Consensus 206 Dv~~Ai~ 212 (214)
||..|++
T Consensus 63 DV~lA~~ 69 (70)
T 1ku5_A 63 DIKLAIK 69 (70)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9999975
No 81
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.20 E-value=0.026 Score=41.53 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=36.8
Q ss_pred ceEeeccCCCCC--------HHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCC
Q psy7187 12 GVVCIDEFDKMR--------EDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTIL 83 (214)
Q Consensus 12 Gv~~iDE~~~~~--------~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~ll 83 (214)
.|++|||++.+. ......|...++.+ ++.+|+++|+... .....+.++++
T Consensus 117 ~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~---------------~~~~i~~~~~~~~-------~~~~~~~~~l~ 174 (195)
T 1jbk_A 117 VILFIDELHTMVGAGKADGAMDAGNMLKPALARG---------------ELHCVGATTLDEY-------RQYIEKDAALE 174 (195)
T ss_dssp EEEEEETGGGGTT------CCCCHHHHHHHHHTT---------------SCCEEEEECHHHH-------HHHTTTCHHHH
T ss_pred eEEEEeCHHHHhccCcccchHHHHHHHHHhhccC---------------CeEEEEeCCHHHH-------HHHHhcCHHHH
Confidence 389999999985 34466777777643 4667788776410 01124778999
Q ss_pred Cccc
Q psy7187 84 SRFD 87 (214)
Q Consensus 84 dRFD 87 (214)
+||+
T Consensus 175 ~r~~ 178 (195)
T 1jbk_A 175 RRFQ 178 (195)
T ss_dssp TTEE
T ss_pred HHhc
Confidence 9998
No 82
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.16 E-value=0.029 Score=41.22 Aligned_cols=56 Identities=18% Similarity=0.144 Sum_probs=39.2
Q ss_pred CceEeeccCCCCC---------HHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCC
Q psy7187 11 GGVVCIDEFDKMR---------EDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPT 81 (214)
Q Consensus 11 ~Gv~~iDE~~~~~---------~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~ 81 (214)
+.|++|||++.+. .+..+.|...++.+ ++.+|+++|+... .....+.++
T Consensus 116 ~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~---------------~~~ii~~~~~~~~-------~~~~~~~~~ 173 (187)
T 2p65_A 116 QVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARG---------------ELRCIGATTVSEY-------RQFIEKDKA 173 (187)
T ss_dssp SEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTT---------------CSCEEEEECHHHH-------HHHTTTCHH
T ss_pred ceEEEEeCHHHhcccccccccchHHHHHHHHHHhcC---------------CeeEEEecCHHHH-------HHHHhccHH
Confidence 3599999999986 55667777777642 4678888887421 011247789
Q ss_pred CCCcccE
Q psy7187 82 ILSRFDM 88 (214)
Q Consensus 82 lldRFDL 88 (214)
+++||+.
T Consensus 174 l~~R~~~ 180 (187)
T 2p65_A 174 LERRFQQ 180 (187)
T ss_dssp HHHHEEE
T ss_pred HHHhcCc
Confidence 9999985
No 83
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.02 E-value=0.41 Score=39.12 Aligned_cols=58 Identities=17% Similarity=0.284 Sum_probs=41.8
Q ss_pred CCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccEE
Q psy7187 10 DGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDMI 89 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL~ 89 (214)
+..|++|||.+.++....+.|+..|++. |..+.+|.++|-.. .+.+++.+|+ ..
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~-------------~~~~~~Il~t~~~~------------~l~~~l~sR~-~~ 187 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKY-------------SKNIRLIMVCDSMS------------PIIAPIKSQC-LL 187 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHS-------------TTTEEEEEEESCSC------------SSCHHHHTTS-EE
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhh-------------cCCCEEEEEeCCHH------------HHHHHHHhhc-eE
Confidence 4569999999999999999999999863 22345555555321 2677899999 55
Q ss_pred EEec
Q psy7187 90 FIIK 93 (214)
Q Consensus 90 ~~~~ 93 (214)
+.+.
T Consensus 188 ~~~~ 191 (354)
T 1sxj_E 188 IRCP 191 (354)
T ss_dssp EECC
T ss_pred EecC
Confidence 5443
No 84
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=91.73 E-value=0.11 Score=42.35 Aligned_cols=51 Identities=24% Similarity=0.283 Sum_probs=39.0
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCc-eEEEEeecCCCCCCCCCcccccccCCCCCCCc
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSR-CSVLAAANSVFGRWDDTKGEQNIDFMPTILSR 85 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~-~~viaa~Np~~g~~~~~~~~~~~~l~~~lldR 85 (214)
+...|++|||++.|+.+..++|+..||+. |.. ..|++|.||. ++.+++.||
T Consensus 81 ~~~kvviIdead~lt~~a~naLLk~LEep-------------~~~t~fIl~t~~~~-------------kl~~tI~SR 132 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQAANAFLKALEEP-------------PEYAVIVLNTRRWH-------------YLLPTIKSR 132 (305)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHHHHSC-------------CTTEEEEEEESCGG-------------GSCHHHHTT
T ss_pred CCceEEEeccHHHhCHHHHHHHHHHHhCC-------------CCCeEEEEEECChH-------------hChHHHHce
Confidence 45689999999999999999999999973 223 3344444552 388999999
No 85
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=91.06 E-value=2.8 Score=30.52 Aligned_cols=65 Identities=11% Similarity=0.036 Sum_probs=52.2
Q ss_pred CCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcH
Q psy7187 125 GELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAID 204 (214)
Q Consensus 125 ~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~ 204 (214)
-.+|...+.+.+.-+- .-.+|.++...+.+..... ++.+.+.|-..|.-.+|.+|+.
T Consensus 81 l~lP~a~V~Ri~k~~g---~~RVS~~A~~~l~~~le~f--------------------~~~I~~~A~~~a~ha~RKTIt~ 137 (154)
T 1f1e_A 81 ELFGRATVRRILKRAG---IERASSDAVDLYNKLICRA--------------------TEELGEKAAEYADEDGRKTVQG 137 (154)
T ss_dssp CCCCHHHHHHHHHHTT---CCEECHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHTTCSEECH
T ss_pred ccCCccHHHHHHHHcC---CccchHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHcCCCccCH
Confidence 3678888888876662 2368999988887765431 5688999999999999999999
Q ss_pred HHHHHHHh
Q psy7187 205 SHVTEALR 212 (214)
Q Consensus 205 ~Dv~~Ai~ 212 (214)
+||..|++
T Consensus 138 eDV~~Al~ 145 (154)
T 1f1e_A 138 EDVEKAIT 145 (154)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999975
No 86
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=91.03 E-value=0.2 Score=41.13 Aligned_cols=58 Identities=14% Similarity=0.225 Sum_probs=41.9
Q ss_pred cCCceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccE
Q psy7187 9 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDM 88 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL 88 (214)
+...|++|||++.|+.+..++|+..||+. |..+.+|.++|-. . ++.+.+.||+-
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep-------------~~~~~~Il~t~~~-~-----------~l~~ti~SRc~- 160 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEP-------------PAETWFFLATREP-E-----------RLLATLRSRCR- 160 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSC-------------CTTEEEEEEESCG-G-----------GSCHHHHTTSE-
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCC-------------CCCeEEEEEeCCh-H-----------hCcHHHhhcce-
Confidence 45689999999999999999999999963 3344444444321 1 37889999984
Q ss_pred EEEe
Q psy7187 89 IFII 92 (214)
Q Consensus 89 ~~~~ 92 (214)
.+.+
T Consensus 161 ~~~~ 164 (334)
T 1a5t_A 161 LHYL 164 (334)
T ss_dssp EEEC
T ss_pred eeeC
Confidence 4444
No 87
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=90.88 E-value=2.9 Score=29.01 Aligned_cols=68 Identities=18% Similarity=0.073 Sum_probs=50.9
Q ss_pred CCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCC
Q psy7187 123 SDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFA 202 (214)
Q Consensus 123 ~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V 202 (214)
....+|...+++++..-.. ...++.+|.-++....... +..|...|..+|+-+.|.+|
T Consensus 38 k~~~lPvaRIkrImK~d~~--~~~is~eA~v~la~a~E~F--------------------i~~L~~~A~~~a~~~krktI 95 (119)
T 4g92_C 38 KIHQLPLARIKKVMKADPE--VKMISAEAPILFAKGCDVF--------------------ITELTMRAWIHAEDNKRRTL 95 (119)
T ss_dssp SCCSSCHHHHHHHHHTSTT--CCEECTHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHTTCSEE
T ss_pred ccCCCCHHHHHHHHhhCCc--cccccHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHhcccCcc
Confidence 4567899999999863222 1256778877776654321 45788899999999999999
Q ss_pred cHHHHHHHHh
Q psy7187 203 IDSHVTEALR 212 (214)
Q Consensus 203 ~~~Dv~~Ai~ 212 (214)
+.+|+..|++
T Consensus 96 ~~~di~~Av~ 105 (119)
T 4g92_C 96 QRSDIAAALS 105 (119)
T ss_dssp CHHHHHHHHT
T ss_pred CHHHHHHHHh
Confidence 9999999985
No 88
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.41 E-value=2.6 Score=36.61 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=22.0
Q ss_pred cCCceEeeccCCCCCHHHH---HHHHHhhhc
Q psy7187 9 ADGGVVCIDEFDKMREDDR---VAIHEAMEQ 36 (214)
Q Consensus 9 a~~Gv~~iDE~~~~~~~~~---~~L~e~me~ 36 (214)
..++|++|||++.+....+ ..|...++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~ 177 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK 177 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh
Confidence 4568999999999977544 678887775
No 89
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=90.40 E-value=1.2 Score=27.79 Aligned_cols=33 Identities=18% Similarity=0.041 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 181 RQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 181 R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
|....+++=|...|+=.+|++|+.+||+.|+..
T Consensus 33 ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 33 RYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 445678888899999999999999999999863
No 90
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=90.30 E-value=0.84 Score=30.93 Aligned_cols=64 Identities=17% Similarity=0.177 Sum_probs=46.8
Q ss_pred CCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHH
Q psy7187 126 ELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDS 205 (214)
Q Consensus 126 ~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~ 205 (214)
-++...++++..-+- ...+++++...+...... -++.+++.|...|+-..|.+|+.+
T Consensus 29 gip~~~I~Rlar~~G---~~rIs~~a~~~l~~vle~--------------------~~~~V~~dA~~~a~hakRktvt~~ 85 (103)
T 2yfw_B 29 GITKPAIRRLARRGG---VKRISGLIYEEVRNVLKT--------------------FLESVIRDAVTYTEHAKRKTVTSL 85 (103)
T ss_dssp -CCHHHHHHHHHHTT---CCEECTTHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHTTCSEECHH
T ss_pred cCCHHHHHHHHHHcC---ccccCHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHcCCCcCcHH
Confidence 378777777654221 135777777777554432 156789999999999999999999
Q ss_pred HHHHHHh
Q psy7187 206 HVTEALR 212 (214)
Q Consensus 206 Dv~~Ai~ 212 (214)
||..|++
T Consensus 86 DV~~Alr 92 (103)
T 2yfw_B 86 DVVYALK 92 (103)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999975
No 91
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=89.71 E-value=2.4 Score=26.13 Aligned_cols=65 Identities=20% Similarity=0.161 Sum_probs=47.2
Q ss_pred CCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHH
Q psy7187 126 ELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDS 205 (214)
Q Consensus 126 ~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~ 205 (214)
.+|...+++.+.-+ . ...++.++...+.+.... -++.|..-|..+|.-..|.+|+.+
T Consensus 2 ~lP~a~v~Ri~k~~-~--~~ris~~A~~~l~~a~e~--------------------fi~~l~~~A~~~a~~~kRkTI~~~ 58 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-G--AERVSDDARIALAKVLEE--------------------MGEEIASEAVKLAKHAGRKTIKAE 58 (68)
T ss_dssp CSCHHHHHHHHHHT-T--CSEECHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHTTCSEECHH
T ss_pred CCCccHHHHHHhcC-C--cccCCHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHcCCCccCHH
Confidence 45666666665544 2 235788888877765533 155677888889999999999999
Q ss_pred HHHHHHhc
Q psy7187 206 HVTEALRL 213 (214)
Q Consensus 206 Dv~~Ai~l 213 (214)
||..|++.
T Consensus 59 Di~~A~~~ 66 (68)
T 1b67_A 59 DIELARKM 66 (68)
T ss_dssp HHHHHGGG
T ss_pred HHHHHHHh
Confidence 99999864
No 92
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=88.96 E-value=0.66 Score=31.45 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=46.7
Q ss_pred CChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHH
Q psy7187 127 LPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSH 206 (214)
Q Consensus 127 l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~D 206 (214)
++...++++..-+- ...+++++...+...... -++.+++.|...|+-..|.+|+.+|
T Consensus 30 ip~~~I~Rlar~~G---~~rIs~~a~~~l~~vle~--------------------~~~~V~~dA~~~a~hakRktIt~~D 86 (103)
T 1tzy_D 30 ITKPAIRRLARRGG---VKRISGLIYEETRGVLKV--------------------FLENVIRDAVTYTEHAKRKTVTAMD 86 (103)
T ss_dssp SCHHHHHHHHHHTT---CCEECTTHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHTTCSEECHHH
T ss_pred CCHHHHHHHHHHcC---ccccCHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHcCCCcCCHHH
Confidence 77777777643221 125777777777654432 1567899999999999999999999
Q ss_pred HHHHHh
Q psy7187 207 VTEALR 212 (214)
Q Consensus 207 v~~Ai~ 212 (214)
|..|++
T Consensus 87 V~~Alr 92 (103)
T 1tzy_D 87 VVYALK 92 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999986
No 93
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.90 E-value=0.031 Score=51.84 Aligned_cols=59 Identities=24% Similarity=0.305 Sum_probs=40.8
Q ss_pred ceEeeccCCCCC--------------HHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCccccccc
Q psy7187 12 GVVCIDEFDKMR--------------EDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNID 77 (214)
Q Consensus 12 Gv~~iDE~~~~~--------------~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~ 77 (214)
+|+|+||++.+. ..+++.|+..|+... -..++.||||+|+...
T Consensus 572 ~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~-----------~~~~v~vI~tTN~~~~------------ 628 (806)
T 1ypw_A 572 CVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----------TKKNVFIIGATNRPDI------------ 628 (806)
T ss_dssp BCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-----------------CCBCCCCCBSCGG------------
T ss_pred eEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc-----------ccCCeEEEEecCCccc------------
Confidence 699999998752 345677888886431 1236889999998532
Q ss_pred CCCCCCC--cccEEEEec
Q psy7187 78 FMPTILS--RFDMIFIIK 93 (214)
Q Consensus 78 l~~~lld--RFDL~~~~~ 93 (214)
|++++++ |||..+.+.
T Consensus 629 ld~allrpgRf~~~i~~~ 646 (806)
T 1ypw_A 629 IDPAILRPGRLDQLIYIP 646 (806)
T ss_dssp GSCTTSSGGGTTSCCCCC
T ss_pred CCHHHhCccccCceeecC
Confidence 8899999 999766654
No 94
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=88.62 E-value=3.3 Score=26.35 Aligned_cols=62 Identities=21% Similarity=0.188 Sum_probs=46.1
Q ss_pred CCChHHHHHHHHHhHhccCC--CCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCc
Q psy7187 126 ELPLPVLKKYINYCRMRCGP--RLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAI 203 (214)
Q Consensus 126 ~l~~~~l~~~i~~ar~~~~p--~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~ 203 (214)
.++...|..++ ++ +.| .+++++.+.+.+.+-.. +++.+..|...||.+.++.+.
T Consensus 5 vl~k~~L~~Lv---~~-idp~~~ld~~vee~ll~lADdF--------------------V~~V~~~ac~lAKhR~s~~le 60 (76)
T 1h3o_B 5 VLTKKKLQDLV---RE-VDPNEQLDEDVEEMLLQIADDF--------------------IESVVTAACQLARHRKSSTLE 60 (76)
T ss_dssp SSCHHHHHHHH---HH-HCSSCCCCHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHTTCCEEC
T ss_pred cccHHHHHHHH---Hh-cCCCCCCCHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHhcCCCCcc
Confidence 34555555444 33 344 67899999998877542 678889999999999999999
Q ss_pred HHHHHHHH
Q psy7187 204 DSHVTEAL 211 (214)
Q Consensus 204 ~~Dv~~Ai 211 (214)
..|+.-.+
T Consensus 61 ~kDvql~L 68 (76)
T 1h3o_B 61 VKDVQLHL 68 (76)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99997654
No 95
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=86.86 E-value=2.5 Score=28.16 Aligned_cols=68 Identities=15% Similarity=0.078 Sum_probs=48.5
Q ss_pred CCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCC
Q psy7187 123 SDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFA 202 (214)
Q Consensus 123 ~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V 202 (214)
....+|...+++.+..... ...++.++.-++...-... +..|...|..+|+-..|.+|
T Consensus 16 ~~~~lP~arIkrImK~~~~--~~~is~eA~~~laka~E~F--------------------i~~l~~~A~~~a~~~krktI 73 (97)
T 1n1j_B 16 RVQELPLARIKKIMKLDED--VKMISAEAPVLFAKAAQIF--------------------ITELTLRAWIHTEDNKRRTL 73 (97)
T ss_dssp ----CCHHHHHHHHTTSTT--CCCBCTHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHTTCSEE
T ss_pred CCCcCCHHHHHHHHccCcc--ccccChHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHcCCccC
Confidence 3456788888888764432 1257888877776554321 45778889999999999999
Q ss_pred cHHHHHHHHh
Q psy7187 203 IDSHVTEALR 212 (214)
Q Consensus 203 ~~~Dv~~Ai~ 212 (214)
+.+|+..|++
T Consensus 74 ~~~di~~Av~ 83 (97)
T 1n1j_B 74 QRNDIAMAIT 83 (97)
T ss_dssp CHHHHHHHHT
T ss_pred CHHHHHHHHh
Confidence 9999999975
No 96
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=86.20 E-value=4.5 Score=25.29 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=49.2
Q ss_pred CCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCc
Q psy7187 124 DGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAI 203 (214)
Q Consensus 124 ~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~ 203 (214)
...|+.+.++.+..-+- -+.+++++...|..-... | +.-+++=|--+++-.+|++++
T Consensus 4 ~s~lp~~~v~~iaes~G---i~~lsddaa~~LA~dvEy-------------------r-~~eI~qeA~kfmrHakRk~Lt 60 (70)
T 1taf_B 4 GSSISAESMKVIAESIG---VGSLSDDAAKELAEDVSI-------------------K-LKRIVQDAAKFMNHAKRQKLS 60 (70)
T ss_dssp SCCCCHHHHHHHHHHTT---CCCBCHHHHHHHHHHHHH-------------------H-HHHHHHHHHHHHHHTTCSSBC
T ss_pred cccCCHHHHHHHHHHCC---CCCCCHHHHHHHHHHHHH-------------------H-HHHHHHHHHHHHHHcCCCeec
Confidence 35678888887755432 247999998888765422 1 345677788888899999999
Q ss_pred HHHHHHHHhc
Q psy7187 204 DSHVTEALRL 213 (214)
Q Consensus 204 ~~Dv~~Ai~l 213 (214)
.+||..|+++
T Consensus 61 ~~DI~~Alk~ 70 (70)
T 1taf_B 61 VRDIDMSLKV 70 (70)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHcC
Confidence 9999999864
No 97
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=85.28 E-value=4.8 Score=33.17 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHH
Q psy7187 179 TVRQLEAIVRIAESMAKMQLEPFAIDSHVTEAL 211 (214)
Q Consensus 179 s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai 211 (214)
.+|.+..+++.+...|....+..|+.+|+..|+
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~ 290 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAV 290 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 367777777777777777777788888887665
No 98
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=85.28 E-value=0.45 Score=39.06 Aligned_cols=77 Identities=8% Similarity=-0.006 Sum_probs=46.2
Q ss_pred CceEeeccCCCCCHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCcccEEE
Q psy7187 11 GGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDMIF 90 (214)
Q Consensus 11 ~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldRFDL~~ 90 (214)
..|+++||++.+. .++.|+.-++-.. .-.++..||+.+|-..-. ...|++.+.|||+...
T Consensus 133 ~~ii~lDE~d~l~--~q~~L~~l~~~~~----------~~~s~~~vI~i~n~~d~~--------~~~L~~~v~SR~~~~~ 192 (318)
T 3te6_A 133 KTLILIQNPENLL--SEKILQYFEKWIS----------SKNSKLSIICVGGHNVTI--------REQINIMPSLKAHFTE 192 (318)
T ss_dssp EEEEEEECCSSSC--CTHHHHHHHHHHH----------CSSCCEEEEEECCSSCCC--------HHHHHTCHHHHTTEEE
T ss_pred ceEEEEecHHHhh--cchHHHHHHhccc----------ccCCcEEEEEEecCcccc--------hhhcchhhhccCCceE
Confidence 3589999999987 3445555443100 013468889988875211 1126778899998755
Q ss_pred EecCCCCccccHHHHHH
Q psy7187 91 IIKDEHDETRDITLAKH 107 (214)
Q Consensus 91 ~~~~~~~~~~d~~ia~~ 107 (214)
+.+.+.+.+.-..|.++
T Consensus 193 i~F~pYt~~el~~Il~~ 209 (318)
T 3te6_A 193 IKLNKVDKNELQQMIIT 209 (318)
T ss_dssp EECCCCCHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 55655555444444333
No 99
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=85.18 E-value=6.1 Score=25.92 Aligned_cols=67 Identities=12% Similarity=0.110 Sum_probs=48.8
Q ss_pred CCCCChHHHHHHHHHh-HhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCC
Q psy7187 124 DGELPLPVLKKYINYC-RMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFA 202 (214)
Q Consensus 124 ~~~l~~~~l~~~i~~a-r~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V 202 (214)
+-.+|...+++.+.-+ .. ...++++|...+.+..... +..|..-|..+|.-..|.+|
T Consensus 6 d~~LP~a~i~ri~K~~~~~--~~~is~dA~~~l~~a~e~F--------------------i~~l~~~A~~~a~~~kRkTI 63 (93)
T 1n1j_A 6 DIYLPIANVARIMKNAIPQ--TGKIAKDAKECVQECVSEF--------------------ISFITSEASERCHQEKRKTI 63 (93)
T ss_dssp -CCCCHHHHHHHHHHTSCT--TCEECHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHTTCSSB
T ss_pred cccCChhHHHHHHHHhCCc--cceeCHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHcCCCcc
Confidence 3467777788776543 11 1257889888887765431 55677788889999999999
Q ss_pred cHHHHHHHHh
Q psy7187 203 IDSHVTEALR 212 (214)
Q Consensus 203 ~~~Dv~~Ai~ 212 (214)
+.+||..|++
T Consensus 64 ~~~Dv~~Al~ 73 (93)
T 1n1j_A 64 NGEDILFAMS 73 (93)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999999975
No 100
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=84.93 E-value=3.5 Score=27.79 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=46.6
Q ss_pred CCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHH
Q psy7187 126 ELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDS 205 (214)
Q Consensus 126 ~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~ 205 (214)
.++...+++... +--...+|+++.+.+...... -++.+++=|.+.|.=..|.+|+.+
T Consensus 28 ~ip~~~I~Rlar---~~Gv~rIS~da~~~l~~~le~--------------------fi~~I~~dA~~~a~HakRKTVt~~ 84 (102)
T 1id3_B 28 GITKPAIRRLAR---RGGVKRISGLIYEEVRAVLKS--------------------FLESVIRDSVTYTEHAKRKTVTSL 84 (102)
T ss_dssp GSCHHHHHHHHH---HTTCCEECTTHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHTTCSEECHH
T ss_pred CCCHHHHHHHHH---HcCchhccHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHcCCCcCcHH
Confidence 477777777643 311124788777777654432 156788999999999999999999
Q ss_pred HHHHHHh
Q psy7187 206 HVTEALR 212 (214)
Q Consensus 206 Dv~~Ai~ 212 (214)
||..|+.
T Consensus 85 DV~~ALk 91 (102)
T 1id3_B 85 DVVYALK 91 (102)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999976
No 101
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=84.83 E-value=9.5 Score=28.41 Aligned_cols=68 Identities=21% Similarity=0.215 Sum_probs=50.7
Q ss_pred CCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCC
Q psy7187 123 SDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFA 202 (214)
Q Consensus 123 ~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V 202 (214)
.+-.+|...+.+.+.-+-- ...+++++...|.+..... +..|..-|..+|.-..|.+|
T Consensus 12 eD~~LP~A~V~RImK~alp--~~rISkDA~~al~ec~~eF--------------------I~~LtseA~e~a~~~~RKTI 69 (179)
T 1jfi_B 12 DDLTIPRAAINKMIKETLP--NVRVANDARELVVNCCTEF--------------------IHLISSEANEICNKSEKKTI 69 (179)
T ss_dssp CCCCCCHHHHHHHHHHHST--TCCBCHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHTTCSSB
T ss_pred hhhhcCHHHHHHHHHHhCC--ccccCHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHcCCCcC
Confidence 4456888888877654411 1378999999998876542 34566778888889999999
Q ss_pred cHHHHHHHHh
Q psy7187 203 IDSHVTEALR 212 (214)
Q Consensus 203 ~~~Dv~~Ai~ 212 (214)
+.+||..|+.
T Consensus 70 ~~eDVl~Al~ 79 (179)
T 1jfi_B 70 SPEHVIQALE 79 (179)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999999974
No 102
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=84.50 E-value=3.6 Score=27.08 Aligned_cols=48 Identities=17% Similarity=-0.005 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 145 PRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 145 p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
..+|+++...|..+. -+..+.+.+=+.+.|+=.+|++|+.+||..|++
T Consensus 31 ~~vs~~~i~aL~e~~--------------------~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~R 78 (90)
T 3v9r_A 31 IKYTPRFINSLLELA--------------------YLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLR 78 (90)
T ss_dssp CCCCHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred ceeCHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 457887777776543 234567777888999999999999999998864
No 103
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=84.43 E-value=13 Score=29.97 Aligned_cols=28 Identities=4% Similarity=-0.169 Sum_probs=24.6
Q ss_pred cCCceEeeccCCC-CCHHHHHHHHHhhhc
Q psy7187 9 ADGGVVCIDEFDK-MREDDRVAIHEAMEQ 36 (214)
Q Consensus 9 a~~Gv~~iDE~~~-~~~~~~~~L~e~me~ 36 (214)
+..-|++|||.+. ++.+..++|+..+|+
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~ 103 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGL 103 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhc
Confidence 5677999999998 998899999999985
No 104
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=84.40 E-value=3.9 Score=28.47 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=44.1
Q ss_pred HHHHHhHhccCCC--CCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHH
Q psy7187 134 KYINYCRMRCGPR--LTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEAL 211 (214)
Q Consensus 134 ~~i~~ar~~~~p~--ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai 211 (214)
.||.-+-.+++|. +|..+...+..+... ..+.|..=|-.+|+...+.+++..|+..|+
T Consensus 37 ~YIyKVLKQVhpd~gISskAm~ImnSfvnD--------------------iferIA~EAs~La~~nkr~TitsreIqtAv 96 (123)
T 2nqb_D 37 IYIYTVLKQVHPDTGISSKAMSIMNSFVND--------------------IFERIAAEASRLAHYNKRSTITSREIQTAV 96 (123)
T ss_dssp HHHHHHHHHHCTTCEECHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHTTCCEECHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHhcCCCcCCHHHHHHHH
Confidence 3443333335776 788888777554422 266777788889999999999999999999
Q ss_pred hc
Q psy7187 212 RL 213 (214)
Q Consensus 212 ~l 213 (214)
+|
T Consensus 97 rL 98 (123)
T 2nqb_D 97 RL 98 (123)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 105
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=82.98 E-value=4.9 Score=28.12 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=43.7
Q ss_pred HHHHhHhccCCC--CCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 135 YINYCRMRCGPR--LTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 135 ~i~~ar~~~~p~--ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
||.-+-.+++|. +|..+...+..+... ..+.|..=|-.+|+...+.+++..|+..|++
T Consensus 41 YIyKVLKQVhpd~gISskAm~ImnSfvnD--------------------iferIA~EAs~La~~nkr~TitsreIqtAvr 100 (126)
T 1tzy_B 41 YVYKVLKQVHPDTGISSKAMGIMNSFVND--------------------IFERIAGEASRLAHYNKRSTITSREIQTAVR 100 (126)
T ss_dssp HHHHHHHHHCTTCEECHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 443333335776 788888777554422 2667777788899999999999999999998
Q ss_pred c
Q psy7187 213 L 213 (214)
Q Consensus 213 l 213 (214)
|
T Consensus 101 L 101 (126)
T 1tzy_B 101 L 101 (126)
T ss_dssp H
T ss_pred H
Confidence 6
No 106
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=82.47 E-value=4.9 Score=29.25 Aligned_cols=65 Identities=17% Similarity=0.207 Sum_probs=48.4
Q ss_pred CCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHH
Q psy7187 126 ELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDS 205 (214)
Q Consensus 126 ~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~ 205 (214)
.+|...+.+.+.-+-- -..+|.++...+.+..... ++.+.+-|-..|.=.+|++|+.+
T Consensus 4 ~LP~a~V~Riik~~lg--~~rVS~dA~~~l~~~l~~f--------------------~~~i~~~A~~~a~ha~RKTv~a~ 61 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIG--ERRLSQDAKDTIYDFVPTM--------------------AEYVANAAKSVLDASGKKTLMEE 61 (154)
T ss_dssp CCCHHHHHHHHHTTST--TCEECHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHTTTCSEECHH
T ss_pred cCCccHHHHHHHhcCC--ccchhHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHcCCCcCCHH
Confidence 4566666666543300 1257999998888776542 56789999999999999999999
Q ss_pred HHHHHHh
Q psy7187 206 HVTEALR 212 (214)
Q Consensus 206 Dv~~Ai~ 212 (214)
||..|+.
T Consensus 62 DV~~a~~ 68 (154)
T 1f1e_A 62 HLKALAD 68 (154)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999873
No 107
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=82.45 E-value=3 Score=26.99 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=46.5
Q ss_pred CCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcH
Q psy7187 125 GELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAID 204 (214)
Q Consensus 125 ~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~ 204 (214)
..++...+++... +--...+|+++.+.+...... -++.+++=|.+.|+=.+|.+|+.
T Consensus 9 ~~ip~~~I~Riar---~~Gv~rIs~da~~~l~~~l~~--------------------~~~~I~~dA~~~a~ha~RKTvt~ 65 (84)
T 2hue_C 9 QGITKPAIRRLAR---RGGVKRISGLIYEETRGVLKV--------------------FLENVIRDAVTYTEHAKRKTVTA 65 (84)
T ss_dssp CSSCHHHHHHHHH---HTTCCEECTTHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHTTCSEECH
T ss_pred CCCCHHHHHHHHH---HcCchhccHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHcCCCcCcH
Confidence 3477777776543 311124787777777654432 15678899999999999999999
Q ss_pred HHHHHHHh
Q psy7187 205 SHVTEALR 212 (214)
Q Consensus 205 ~Dv~~Ai~ 212 (214)
+||..|++
T Consensus 66 ~DV~~Alk 73 (84)
T 2hue_C 66 MDVVYALK 73 (84)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 99999975
No 108
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=80.23 E-value=5.2 Score=27.45 Aligned_cols=48 Identities=15% Similarity=0.086 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 145 PRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 145 p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
..+|+++...|..+. -+..+.+.+=+.+.|+=.+|++|+.+||..|++
T Consensus 46 ~~vS~~ai~aL~El~--------------------~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~R 93 (113)
T 4dra_A 46 MQFSKQTIAAISELT--------------------FRQCENFAKDLEMFARHAKRTTINTEDVKLLAR 93 (113)
T ss_dssp CCBCHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 347777766665543 334566777888999999999999999998864
No 109
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=79.57 E-value=2.2 Score=29.77 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 183 LEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 183 l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
++.++|=|-+.|.-..|++|+.+||..|+.
T Consensus 81 l~~i~rdav~yaehA~RKTVta~DV~~Alk 110 (121)
T 2ly8_A 81 LESVIRDSVTYTEHAKRKTVTSLDVVYALK 110 (121)
T ss_dssp HHHHHHHHHHHHHHTTCCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcCcHHHHHHHHH
Confidence 678999999999999999999999999975
No 110
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=78.54 E-value=8.8 Score=26.90 Aligned_cols=67 Identities=13% Similarity=0.143 Sum_probs=46.5
Q ss_pred CCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcH
Q psy7187 125 GELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAID 204 (214)
Q Consensus 125 ~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~ 204 (214)
..+|...+++.+.-+--- ...+++++...|.+..... +..|..-|..+|.-..|.+|+.
T Consensus 8 ~~LP~A~I~rImK~~~pd-~~~iS~dA~~~l~ka~e~F--------------------I~~lt~~A~~~a~~~kRKTI~~ 66 (128)
T 2byk_B 8 LNLPNAVIGRLIKEALPE-SASVSKEARAAIARAASVF--------------------AIFVTSSSTALAHKQNHKTITA 66 (128)
T ss_dssp ---CCSHHHHHHHHHSCT-TCEECHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHTTCSSCCH
T ss_pred ccCCHHHHHHHHHHhCcc-cceECHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHcCCCccCH
Confidence 456777777776532100 1257899988887766431 4466777888999999999999
Q ss_pred HHHHHHHh
Q psy7187 205 SHVTEALR 212 (214)
Q Consensus 205 ~Dv~~Ai~ 212 (214)
+||..|+.
T Consensus 67 ~Dv~~Al~ 74 (128)
T 2byk_B 67 KDILQTLT 74 (128)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999975
No 111
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=78.26 E-value=8.2 Score=26.21 Aligned_cols=48 Identities=17% Similarity=0.106 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 145 PRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 145 p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
..+++++...|..+. .+..+.+.+=+.+.|+=.+|.+|+.+||..|++
T Consensus 38 ~~vs~~~i~aL~E~~--------------------~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~R 85 (107)
T 3b0b_B 38 VLFSKQTVAAISEIT--------------------FRQCENFARDLEMFARHAKRSTITSEDVKLLAR 85 (107)
T ss_dssp CEECHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred CccCHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHH
Confidence 457777776665543 334567778888999999999999999999875
No 112
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=77.95 E-value=13 Score=27.93 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=40.3
Q ss_pred cCC--CCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 143 CGP--RLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 143 ~~p--~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
++| .+|+++...+..+.. +.++.|.+-|..+++...+.++|..||..|+++
T Consensus 16 v~p~~~iS~~Am~~m~s~v~--------------------di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 16 THPDTGISQKSMSILNSFVN--------------------DIFERIATEASKLAAYNKKSTISAREIQTAVRL 68 (192)
T ss_dssp HCSSCCCCHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred cCCCCCcCHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 466 578899888865542 347777888888899999999999999999875
No 113
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=77.03 E-value=2.9 Score=38.72 Aligned_cols=61 Identities=23% Similarity=0.252 Sum_probs=41.7
Q ss_pred CceEeeccCCCCCH-----------HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCC
Q psy7187 11 GGVVCIDEFDKMRE-----------DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFM 79 (214)
Q Consensus 11 ~Gv~~iDE~~~~~~-----------~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~ 79 (214)
..|+||||++.+-+ .+.+.|+..|+.-. . ..+..||||+|-... |+
T Consensus 298 PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~-----~------~~~V~VIaaTN~~d~------------LD 354 (806)
T 3cf2_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----Q------RAHVIVMAATNRPNS------------ID 354 (806)
T ss_dssp SEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCC-----G------GGCEEEEEECSSTTT------------SC
T ss_pred CeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccc-----c------cCCEEEEEecCChhh------------cC
Confidence 47999999998642 35667777776321 0 124678888886533 77
Q ss_pred CCCCC--cccEEEEecC
Q psy7187 80 PTILS--RFDMIFIIKD 94 (214)
Q Consensus 80 ~~lld--RFDL~~~~~~ 94 (214)
++|+. |||..+.+.-
T Consensus 355 ~ALrR~GRFd~~I~i~~ 371 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGI 371 (806)
T ss_dssp TTTTSTTSSCEEEECCC
T ss_pred HHHhCCcccceEEecCC
Confidence 88887 9998887643
No 114
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=76.30 E-value=5.2 Score=26.65 Aligned_cols=68 Identities=13% Similarity=0.197 Sum_probs=45.0
Q ss_pred CCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCC
Q psy7187 123 SDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFA 202 (214)
Q Consensus 123 ~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V 202 (214)
....+|..-+++++..... + ..++.++.-++...-..+ +..|...|..+|+-..|..|
T Consensus 8 ~~~~fPvaRIkrimK~~~~-~-~~vs~~A~v~la~a~E~F--------------------i~el~~~A~~~a~~~krktI 65 (98)
T 1jfi_A 8 YNARFPPARIKKIMQTDEE-I-GKVAAAVPVIISRALELF--------------------LESLLKKACQVTQSRNAKTM 65 (98)
T ss_dssp --CCCCHHHHHHHHTTSTT-C-CCBCTTHHHHHHHHHHHH--------------------HHHHHHHHHHHHHTC---CB
T ss_pred cCCCCChHHHHHHHHcCcc-c-cccchHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHcCCCee
Confidence 3456788888888764332 1 257777766665543221 45788899999999999999
Q ss_pred cHHHHHHHHh
Q psy7187 203 IDSHVTEALR 212 (214)
Q Consensus 203 ~~~Dv~~Ai~ 212 (214)
+.+|+..|++
T Consensus 66 ~~~di~~av~ 75 (98)
T 1jfi_A 66 TTSHLKQCIE 75 (98)
T ss_dssp CHHHHHTTCC
T ss_pred cHHHHHHHHh
Confidence 9999998864
No 115
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=73.33 E-value=5 Score=25.08 Aligned_cols=37 Identities=8% Similarity=-0.023 Sum_probs=32.3
Q ss_pred cccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 176 IPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 176 ~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
.++|..-+..+.+-|.-.|-.+.+..|+.+|+..|+.
T Consensus 35 ~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~ 71 (78)
T 3kw6_A 35 PGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVA 71 (78)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 3578888999999998888888999999999999975
No 116
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=70.07 E-value=20 Score=24.90 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=46.6
Q ss_pred CCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHH
Q psy7187 126 ELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDS 205 (214)
Q Consensus 126 ~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~ 205 (214)
.+|...+.+++.-.+- ...++..|.-++...-..+ ..-++.+|...|+-..+..|+++
T Consensus 23 ~fPV~ri~R~Lk~~~~--a~RV~~~A~VyLaAvLEyL--------------------~aEIlelAgn~A~~~k~krItp~ 80 (123)
T 2nqb_C 23 QFPVGRIHRLLRKGNY--AERVGAGAPVYLAAVMEYL--------------------AAEVLELAGNAARDNKKTRIIPR 80 (123)
T ss_dssp SSCHHHHHHHHHHTTS--CSEECTHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHTTCSEECHH
T ss_pred eccHHHHHHHHHcccc--ccccchhhHHHHHHHHHHH--------------------HHHHHHHHHHHHHhcCCccccHH
Confidence 4677788888755432 1257777777775543221 23577889999999999999999
Q ss_pred HHHHHHh
Q psy7187 206 HVTEALR 212 (214)
Q Consensus 206 Dv~~Ai~ 212 (214)
|+..|++
T Consensus 81 hi~lAI~ 87 (123)
T 2nqb_C 81 HLQLAIR 87 (123)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999985
No 117
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=69.37 E-value=11 Score=26.81 Aligned_cols=48 Identities=17% Similarity=0.108 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 145 PRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 145 p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
..+|+++...|..+. -+..+.+.+=+.+.|+=.+|.+|+.+||..+++
T Consensus 38 ~~vS~~ai~aL~El~--------------------~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~R 85 (140)
T 3vh5_A 38 VLFSKQTVAAISEIT--------------------FRQAENFARDLEMFARHAKRSTITSEDVKLLAR 85 (140)
T ss_dssp CEECHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 356777766665543 234566777788899999999999999999875
No 118
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=69.23 E-value=21 Score=24.60 Aligned_cols=65 Identities=15% Similarity=0.131 Sum_probs=46.6
Q ss_pred CCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHH
Q psy7187 126 ELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDS 205 (214)
Q Consensus 126 ~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~ 205 (214)
.+|...+.+++.-.+- ...++..|.-++...-..+ ..-++.+|...|+-..+..|+++
T Consensus 22 qfPV~ri~R~Lk~~~~--a~RV~~~A~VyLaAvLEyL--------------------~aEIlelAgn~A~~~k~~rItp~ 79 (120)
T 2f8n_G 22 IFPVGRMLRYIKKGHP--KYRIGVGAPVYMAAVLEYL--------------------TAEILELAVNAARDNKKGRVTPR 79 (120)
T ss_dssp SSCHHHHHHHHHHHSS--SCEECTHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHTTCSEECHH
T ss_pred cCChHHHHHHHHcCcc--ccccccchHHHHHHHHHHH--------------------HHHHHHHHHHHHhhcCCceEcHH
Confidence 4677788888765431 2257877777765543221 23677888888999999999999
Q ss_pred HHHHHHh
Q psy7187 206 HVTEALR 212 (214)
Q Consensus 206 Dv~~Ai~ 212 (214)
|+..|++
T Consensus 80 hi~lAI~ 86 (120)
T 2f8n_G 80 HILLAVA 86 (120)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999985
No 119
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=67.71 E-value=23 Score=24.82 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=46.7
Q ss_pred CCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHH
Q psy7187 126 ELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDS 205 (214)
Q Consensus 126 ~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~ 205 (214)
.+|...+.+++.-.+- ...++..|.-++...-..+ ..-++.+|...|+-..+..|+++
T Consensus 25 qfPV~rI~R~Lk~~~~--a~RVs~~A~VyLaAvLEyL--------------------~aEIlelAgn~A~~~k~krItp~ 82 (129)
T 1tzy_A 25 QFPVGRVHRLLRKGNY--AERVGAGAPVYLAAVLEYL--------------------TAEILELAGNAARDNKKTRIIPR 82 (129)
T ss_dssp SSCHHHHHHHHHHTTS--SSEECTHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHTTCSEECHH
T ss_pred eccHHHHHHHHHcccc--ccccchhhHHHHHHHHHHH--------------------HHHHHHHHHHHHHhcCCCeEcHH
Confidence 4677788888754432 1257877777775543221 33578889899999999999999
Q ss_pred HHHHHHh
Q psy7187 206 HVTEALR 212 (214)
Q Consensus 206 Dv~~Ai~ 212 (214)
|+..|++
T Consensus 83 hi~lAI~ 89 (129)
T 1tzy_A 83 HLQLAIR 89 (129)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999985
No 120
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=67.50 E-value=16 Score=28.40 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 183 LEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 183 l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
++.++|=|-+.|.-.+|++|+.+||..|+.
T Consensus 195 le~IirdAv~yaeHA~RKTVta~DV~~ALK 224 (235)
T 2l5a_A 195 LESVIRDSVTYTEHAKRKTVTSLDVVYALK 224 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcCcHHHHHHHHH
Confidence 678999999999999999999999999875
No 121
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=67.21 E-value=18 Score=25.99 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=45.9
Q ss_pred CCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHH
Q psy7187 126 ELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDS 205 (214)
Q Consensus 126 ~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~ 205 (214)
.+|...+.+++.-.+- ...++..|.-|+...-..+ ..-++.+|...|+-..+..|+++
T Consensus 44 qFPVgrI~R~LK~~~~--a~RVs~~A~VyLAAVLEYL--------------------~aEILelAgn~A~~~krkrItpr 101 (149)
T 2f8n_K 44 QFPVGRVHRLLRKGNY--SERVGAGAPVYLAAVLEYL--------------------TAEILELAGNAARDNKKTRIIPR 101 (149)
T ss_dssp SSCHHHHHHHHHHTTS--CSEECTTHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHTTCSEECHH
T ss_pred eccHHHHHHHHHcccc--ccccCcCcHHHHHHHHHHH--------------------HHHHHHHHHHHHHhcCCCcCcHH
Confidence 4677788888765432 2246777766665443221 23577888889998999999999
Q ss_pred HHHHHHh
Q psy7187 206 HVTEALR 212 (214)
Q Consensus 206 Dv~~Ai~ 212 (214)
|+..|++
T Consensus 102 hI~lAI~ 108 (149)
T 2f8n_K 102 HLQLAIR 108 (149)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999985
No 122
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=66.87 E-value=8.2 Score=27.55 Aligned_cols=66 Identities=12% Similarity=0.055 Sum_probs=39.5
Q ss_pred CCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHh-ccCCCCCCc
Q psy7187 125 GELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMA-KMQLEPFAI 203 (214)
Q Consensus 125 ~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A-~l~~r~~V~ 203 (214)
..+|...+++.+..... ...++.+|.-++....... +..|...|..+| .-..|.+|+
T Consensus 18 ~~LPlaRIKrIMK~dpd--v~~Is~eA~vliakA~ElF--------------------I~~Lt~~A~~~a~~~~kRKtI~ 75 (140)
T 2byk_A 18 TFLPLSRVRTIMKSSMD--TGLITNEVLFLMTKCTELF--------------------VRHLAGAAYTEEFGQRPGEALK 75 (140)
T ss_dssp -----------CCSSSS--CSCCCHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHTTCCSCEEC
T ss_pred CCCCHHHHHHHHhcCcc--cccccHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHhcCCcccC
Confidence 45677777776543222 1257888877766554321 457888999999 999999999
Q ss_pred HHHHHHHHh
Q psy7187 204 DSHVTEALR 212 (214)
Q Consensus 204 ~~Dv~~Ai~ 212 (214)
..|+..|+.
T Consensus 76 ~~Dl~~AV~ 84 (140)
T 2byk_A 76 YEHLSQVVN 84 (140)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999985
No 123
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=63.22 E-value=15 Score=22.99 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=31.1
Q ss_pred cccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 176 IPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 176 ~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
.+.|..-+..+.+-|.-.|-.+.+..|+.+|+..|+.
T Consensus 33 ~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~ 69 (83)
T 3aji_B 33 DKISGADINSICQESGMLAVRENRYIVLAKDFEKAYK 69 (83)
T ss_dssp CCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 3678888888888888888888888999999999874
No 124
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=62.17 E-value=2.9 Score=38.68 Aligned_cols=60 Identities=23% Similarity=0.284 Sum_probs=38.1
Q ss_pred CceEeeccCCCCCH--------------HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccc
Q psy7187 11 GGVVCIDEFDKMRE--------------DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNI 76 (214)
Q Consensus 11 ~Gv~~iDE~~~~~~--------------~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~ 76 (214)
..|+||||++.+-. .+++.|+.-|+.-. + ..+..||||+|-.+.
T Consensus 571 P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~------~-----~~~V~vi~aTN~p~~----------- 628 (806)
T 3cf2_A 571 PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS------T-----KKNVFIIGATNRPDI----------- 628 (806)
T ss_dssp SEEEECSCGGGCC--------------CHHHHHHHHHHHSSC------S-----SSSEEEECC-CCSSS-----------
T ss_pred CceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC------C-----CCCEEEEEeCCCchh-----------
Confidence 47999999998632 25677887786311 0 234788999987532
Q ss_pred cCCCCCCC--cccEEEEec
Q psy7187 77 DFMPTILS--RFDMIFIIK 93 (214)
Q Consensus 77 ~l~~~lld--RFDL~~~~~ 93 (214)
|.++++- |||-.+.+.
T Consensus 629 -lD~AllRpgRfd~~i~v~ 646 (806)
T 3cf2_A 629 -IDPAILRPGRLDQLIYIP 646 (806)
T ss_dssp -SCHHHHSTTTSCCEEEC-
T ss_pred -CCHhHcCCCcceEEEEEC
Confidence 6666665 788766653
No 125
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=59.47 E-value=33 Score=23.95 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=45.3
Q ss_pred CCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHH
Q psy7187 126 ELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDS 205 (214)
Q Consensus 126 ~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~ 205 (214)
.+|...+.+++.-.+. ..-.++..|.-++...-..+ ..-++.+|...|+-..+..|+++
T Consensus 27 qfPV~ri~R~Lk~~~~-a~~RV~~~A~VyLaAvLEyL--------------------~aEIlelAgn~A~~~k~krItpr 85 (128)
T 1f66_C 27 QFPVGRIHRHLKSRTT-SHGRVGATAAVYSAAILEYL--------------------TAEVLELAGNASKDLKVKRITPR 85 (128)
T ss_dssp SSCHHHHHHHHHHTSC-SSCEECTTHHHHHHHHHHHH--------------------HHHHHHHHHHHHHTTTCSEECHH
T ss_pred cCChHHHHHHHHHccc-chhhccccHHHHHHHHHHHH--------------------HHHHHHHHHHHHHhcCCCeEcHH
Confidence 4677788888765431 11236776666665443221 23578889889999999999999
Q ss_pred HHHHHHh
Q psy7187 206 HVTEALR 212 (214)
Q Consensus 206 Dv~~Ai~ 212 (214)
|+..|++
T Consensus 86 hi~lAI~ 92 (128)
T 1f66_C 86 HLQLAIR 92 (128)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999975
No 126
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=58.39 E-value=22 Score=24.96 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=44.9
Q ss_pred CCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHH
Q psy7187 126 ELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDS 205 (214)
Q Consensus 126 ~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~ 205 (214)
.+|...+.+++.-.+- ...++..|.-++...-..+ ..-++.+|...|+-..+..|+++
T Consensus 25 qfPV~rI~R~Lk~~~~--a~RVs~~A~VyLaAvLEyL--------------------~aEIlelAgn~A~~~k~krItp~ 82 (131)
T 1id3_C 25 TFPVGRVHRLLRRGNY--AQRIGSGAPVYLTAVLEYL--------------------AAEILELAGNAARDNKKTRIIPR 82 (131)
T ss_dssp SSCHHHHHHHHHTTCS--CSEECSSHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHTTCSEECHH
T ss_pred ecCHHHHHHHHHcccc--ccccchhhHHHHHHHHHHH--------------------HHHHHHHHHHHHhhcCCceEcHH
Confidence 4677788887753321 1246776666665443221 23577888889999999999999
Q ss_pred HHHHHHh
Q psy7187 206 HVTEALR 212 (214)
Q Consensus 206 Dv~~Ai~ 212 (214)
|+..|++
T Consensus 83 hI~lAI~ 89 (131)
T 1id3_C 83 HLQLAIR 89 (131)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999986
No 127
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=58.32 E-value=34 Score=22.02 Aligned_cols=69 Identities=10% Similarity=0.036 Sum_probs=44.5
Q ss_pred CCCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCC
Q psy7187 123 SDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFA 202 (214)
Q Consensus 123 ~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V 202 (214)
..+.++.+.+.+.+...=+.-+..+++++.....+|..- =..|++.|.++ .|...+...|
T Consensus 9 ~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~i-------------------FV~EAv~RA~~-~a~~e~~~~l 68 (84)
T 4dra_E 9 AGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKV-------------------FVVEAAVRGVR-QAQAEDALRV 68 (84)
T ss_dssp --CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHH-------------------HHHHHHHHHHH-HHHHTTCSSB
T ss_pred CCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHH-------------------HHHHHHHHHHH-HHHhcCCCcc
Confidence 345678888887765221111346788887777665421 22577778776 5666788999
Q ss_pred cHHHHHHHH
Q psy7187 203 IDSHVTEAL 211 (214)
Q Consensus 203 ~~~Dv~~Ai 211 (214)
+.+|++..+
T Consensus 69 e~e~LEki~ 77 (84)
T 4dra_E 69 DVDQLEKVL 77 (84)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 999998764
No 128
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=58.21 E-value=15 Score=23.12 Aligned_cols=37 Identities=19% Similarity=0.096 Sum_probs=30.9
Q ss_pred cccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 176 IPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 176 ~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
.+.|-.-+..+.+-|--.|-.+.+..|+.+|+..|+.
T Consensus 30 ~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~ 66 (82)
T 2dzn_B 30 DSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYA 66 (82)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 4678888888888888888888888999999999874
No 129
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=58.01 E-value=17 Score=23.32 Aligned_cols=36 Identities=17% Similarity=0.096 Sum_probs=28.0
Q ss_pred ccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 177 PITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 177 ~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
+.|-.-+..+.+-|--.|--+.+..|+.+|+..|+.
T Consensus 34 G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~ 69 (88)
T 3vlf_B 34 NSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVD 69 (88)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 456677777777777777667788899999999874
No 130
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=56.70 E-value=5.6 Score=36.74 Aligned_cols=60 Identities=23% Similarity=0.287 Sum_probs=38.6
Q ss_pred CCceEeeccCCCCC-----------HHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccC
Q psy7187 10 DGGVVCIDEFDKMR-----------EDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDF 78 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~-----------~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l 78 (214)
..+++|+||++.+. ......|++.|+... . ...+.+++|+|+... +
T Consensus 297 ~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-----~------~~~v~vI~atn~~~~------------l 353 (806)
T 1ypw_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----Q------RAHVIVMAATNRPNS------------I 353 (806)
T ss_dssp CSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-----T------TSCCEEEEECSCTTT------------S
T ss_pred CCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-----c------cccEEEecccCCchh------------c
Confidence 34799999997654 235667777776322 0 245788999998532 4
Q ss_pred CCCCCC--cccEEEEe
Q psy7187 79 MPTILS--RFDMIFII 92 (214)
Q Consensus 79 ~~~lld--RFDL~~~~ 92 (214)
.+.+.. |||-.+.+
T Consensus 354 d~al~r~gRf~~~i~i 369 (806)
T 1ypw_A 354 DPALRRFGRFDREVDI 369 (806)
T ss_dssp CTTTTSTTSSCEEECC
T ss_pred CHHHhccccccccccc
Confidence 455544 88765544
No 131
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=53.50 E-value=41 Score=21.46 Aligned_cols=68 Identities=16% Similarity=0.080 Sum_probs=42.6
Q ss_pred CCCCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCc
Q psy7187 124 DGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAI 203 (214)
Q Consensus 124 ~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~ 203 (214)
.+.++.+.+.+.+...=+.-+..++++|.+...+|-.- =.-|++.|.++- |+.++...|+
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~i-------------------FV~EAv~RA~~~-a~~e~~~~le 65 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKV-------------------FVREAAARAARQ-AQAEDLEKVD 65 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHH-------------------HHHHHHHHHHHH-HHHTTCSEEC
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHH-------------------HHHHHHHHHHHH-HHhCCCCeec
Confidence 45677777777664431111346788887777554321 124666776653 5678889999
Q ss_pred HHHHHHHH
Q psy7187 204 DSHVTEAL 211 (214)
Q Consensus 204 ~~Dv~~Ai 211 (214)
.+|++..+
T Consensus 66 ~~~LEki~ 73 (81)
T 3b0b_C 66 IEHVEKVL 73 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
No 132
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=51.92 E-value=22 Score=22.75 Aligned_cols=36 Identities=8% Similarity=0.001 Sum_probs=28.3
Q ss_pred ccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 177 PITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 177 ~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
++|-.-+..+.+-|--.|--+.+..|+.+|+..|+.
T Consensus 44 G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~ 79 (86)
T 2krk_A 44 GASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVA 79 (86)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 556777777777777777767788999999999874
No 133
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=49.68 E-value=7.3 Score=26.86 Aligned_cols=25 Identities=24% Similarity=0.516 Sum_probs=19.8
Q ss_pred eccCCCCCHHHHHHHHHhhhcCeEE
Q psy7187 16 IDEFDKMREDDRVAIHEAMEQQTIS 40 (214)
Q Consensus 16 iDE~~~~~~~~~~~L~e~me~~~i~ 40 (214)
||-|+.|+.++++.|.+++|+|.|+
T Consensus 91 I~Gfd~L~~eDQekIkk~ie~g~v~ 115 (116)
T 3od8_A 91 VDGFSELRWDDQQKVKKTAEAGGVT 115 (116)
T ss_dssp EETGGGSCHHHHHHHHHHHHC----
T ss_pred CcChHHCCHHHHHHHHHHHHcCCCC
Confidence 7888999999999999999998764
No 134
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=49.48 E-value=12 Score=26.39 Aligned_cols=27 Identities=7% Similarity=0.417 Sum_probs=22.3
Q ss_pred CCceEeeccCCCCCHHHHHHHHHhhhc
Q psy7187 10 DGGVVCIDEFDKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 10 ~~Gv~~iDE~~~~~~~~~~~L~e~me~ 36 (214)
.-.+++|||+..+++...+.|.+.++.
T Consensus 83 ~~~lLilDE~~~~~~~~~~~l~~li~~ 109 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEEQALLFSIFNR 109 (149)
T ss_dssp GCSEEEEESTTCCCSHHHHHHHHHHHH
T ss_pred CCCEEEEeCccccChHHHHHHHHHHHH
Confidence 457999999999988777888888763
No 135
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=48.15 E-value=12 Score=27.63 Aligned_cols=28 Identities=14% Similarity=0.130 Sum_probs=23.0
Q ss_pred CceEeeccCCCCCHHHHHHHHHhhhcCe
Q psy7187 11 GGVVCIDEFDKMREDDRVAIHEAMEQQT 38 (214)
Q Consensus 11 ~Gv~~iDE~~~~~~~~~~~L~e~me~~~ 38 (214)
..+++|||+..++++..+.|...++++.
T Consensus 77 ~dvviIDE~Q~~~~~~~~~l~~l~~~~~ 104 (184)
T 2orw_A 77 TRGVFIDEVQFFNPSLFEVVKDLLDRGI 104 (184)
T ss_dssp EEEEEECCGGGSCTTHHHHHHHHHHTTC
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHCCC
Confidence 4689999999998888888887777643
No 136
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=47.99 E-value=21 Score=28.00 Aligned_cols=66 Identities=20% Similarity=0.209 Sum_probs=38.8
Q ss_pred CceEeeccCCCCCH-----------HHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCC
Q psy7187 11 GGVVCIDEFDKMRE-----------DDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFM 79 (214)
Q Consensus 11 ~Gv~~iDE~~~~~~-----------~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~ 79 (214)
..++++||++.+-. ...+.+..-|..|. + .....++|++|...- |.
T Consensus 104 p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~----~-------~~~~i~ia~tn~p~~------------LD 160 (274)
T 2x8a_A 104 PCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLE----A-------RQQVFIMAATNRPDI------------ID 160 (274)
T ss_dssp SEEEEEETCTTTCC---------CTTHHHHHHHHHHTCC----S-------TTCEEEEEEESCGGG------------SC
T ss_pred CCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccc----c-------cCCEEEEeecCChhh------------CC
Confidence 36899999987532 23344555554332 0 113567777776421 66
Q ss_pred CCCCC--cccEEEEecCCCCccc
Q psy7187 80 PTILS--RFDMIFIIKDEHDETR 100 (214)
Q Consensus 80 ~~lld--RFDL~~~~~~~~~~~~ 100 (214)
++++- |||-.+.+ +.++...
T Consensus 161 ~al~r~gRfd~~i~~-~~P~~~~ 182 (274)
T 2x8a_A 161 PAILRPGRLDKTLFV-GLPPPAD 182 (274)
T ss_dssp HHHHSTTSSCEEEEC-CSCCHHH
T ss_pred HhhcCcccCCeEEEe-CCcCHHH
Confidence 77775 99988875 3445443
No 137
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=47.53 E-value=23 Score=24.75 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=29.0
Q ss_pred cccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHH
Q psy7187 176 IPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEAL 211 (214)
Q Consensus 176 ~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai 211 (214)
.++|++ +..++.-|+.+|+-.+.++|+.+|+..|+
T Consensus 80 ~~~s~~-~~~vl~~A~~~A~~~~~~~v~~eHlLlAl 114 (145)
T 3fes_A 80 IVLSPR-SKQILELSGMFANKLKTNYIGTEHILLAI 114 (145)
T ss_dssp CEECHH-HHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred CCCCHH-HHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 456655 67778889999998999999999998875
No 138
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=46.35 E-value=80 Score=23.50 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=43.2
Q ss_pred CCChHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHH
Q psy7187 126 ELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDS 205 (214)
Q Consensus 126 ~l~~~~l~~~i~~ar~~~~p~ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~ 205 (214)
.+|...+.+++.-.+. ..-.++..|.-++...-..+ ..-++.+|.-.|+-..+..|+++
T Consensus 105 ~fPv~ri~R~lk~~~~-a~~Rv~~~A~vyLaavLEyl--------------------~~eIlelA~n~a~~~~~~~I~p~ 163 (192)
T 2jss_A 105 QFPVGRIKRYLKRHAT-GRTRVGSKAAIYLTAVLEYL--------------------TAEVLELAGNAAKDLKVKRITPR 163 (192)
T ss_dssp CSCHHHHHHHHHHTTC-SSCCCCTTTHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHTCSSCCHH
T ss_pred cCCHHHHHHHHHhcCc-cccccccChHHHHHHHHHHH--------------------HHHHHHHHHHHHHhcCCCccCHH
Confidence 4677777777754432 11235666655554432211 23567788888988999999999
Q ss_pred HHHHHHh
Q psy7187 206 HVTEALR 212 (214)
Q Consensus 206 Dv~~Ai~ 212 (214)
|+..|+.
T Consensus 164 ~i~lAi~ 170 (192)
T 2jss_A 164 HLQLAIR 170 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999985
No 139
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=44.15 E-value=39 Score=20.41 Aligned_cols=46 Identities=30% Similarity=0.276 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCCcCCCCccccccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 147 LTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 147 ls~ea~~~i~~~y~~~r~~~~~~~~~~~~~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
.+++|...|.+ +|.-+|+- +-|-.+..|+-++.+.||.+.+.+|..
T Consensus 5 Wt~EAe~~Lkk------------------IP~FVR~k--vrr~tE~~Are~G~~~IT~ev~~~AK~ 50 (62)
T 2l09_A 5 WTSEAKTKLKN------------------IPFFARSQ--AKARIEQLARQAEQDIVTPELVEQARL 50 (62)
T ss_dssp ECHHHHHHHHT------------------SCGGGHHH--HHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCHHHHHHHHh------------------CCHHHHHH--HHHHHHHHHHHcCCCeEcHHHHHHHHH
Confidence 56777777643 44455553 347788999999999999999988864
No 140
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=43.12 E-value=30 Score=24.16 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=29.1
Q ss_pred cccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHH
Q psy7187 176 IPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEAL 211 (214)
Q Consensus 176 ~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai 211 (214)
.++|++ +..++..|+..|+-.+.++|+.+|+..|+
T Consensus 80 ~~~s~~-~~~vL~~A~~~a~~~~~~~i~~eHlLlal 114 (146)
T 3fh2_A 80 IPFTPR-AKKVLELSLREGLQMGHKYIGTEFLLLGL 114 (146)
T ss_dssp CCBCHH-HHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred CcCCHH-HHHHHHHHHHHHHHcCCCcCcHHHHHHHH
Confidence 456765 66788889999999999999999998875
No 141
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=41.86 E-value=33 Score=23.61 Aligned_cols=35 Identities=11% Similarity=0.032 Sum_probs=29.8
Q ss_pred cccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHH
Q psy7187 176 IPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEAL 211 (214)
Q Consensus 176 ~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai 211 (214)
.++|++ +..++..|+..|+-.+.++|+.+|+..|+
T Consensus 78 ~~~s~~-~~~~l~~A~~~A~~~~~~~i~~ehLLlal 112 (143)
T 1k6k_A 78 TQPTLS-FQRVLQRAVFHVQSSGRNEVTGANVLVAI 112 (143)
T ss_dssp CEECHH-HHHHHHHHHHHHHSSSCSCBCHHHHHHHH
T ss_pred CCCCHH-HHHHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 466766 67788999999999999999999998886
No 142
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=37.87 E-value=33 Score=23.73 Aligned_cols=35 Identities=11% Similarity=0.180 Sum_probs=28.5
Q ss_pred cccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHH
Q psy7187 176 IPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEAL 211 (214)
Q Consensus 176 ~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai 211 (214)
.++|++ +..++..|+..|+-.+.++|+.+|+..|+
T Consensus 81 ~~~s~~-~~~vl~~A~~~a~~~~~~~i~~ehlLlal 115 (148)
T 1khy_A 81 VQPSQD-LVRVLNLCDKLAQKRGDNFISSELFVLAA 115 (148)
T ss_dssp -CBCHH-HHHHHHHHHHHHHHHTCSSBCHHHHHHHH
T ss_pred cCcCHH-HHHHHHHHHHHHHHcCCCeecHHHHHHHH
Confidence 356665 67788889999999999999999998875
No 143
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=36.42 E-value=44 Score=23.19 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=28.0
Q ss_pred cccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHH
Q psy7187 176 IPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEAL 211 (214)
Q Consensus 176 ~~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai 211 (214)
.++|++ +..++..|+..|+-.+.++|+.+|+.-|+
T Consensus 78 ~~~s~~-~~~vL~~A~~~A~~~~~~~i~~ehlLlal 112 (150)
T 2y1q_A 78 IHYTPR-AKKVIELSMDEARKLGHSYVGTEHILLGL 112 (150)
T ss_dssp CEECHH-HHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred CCCCHH-HHHHHHHHHHHHHHcCCCeecHHHHHHHH
Confidence 456765 66778888889988888999999988775
No 144
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=35.00 E-value=32 Score=30.48 Aligned_cols=40 Identities=30% Similarity=0.405 Sum_probs=27.1
Q ss_pred eEeeccCCCC----CHHHHHHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCC
Q psy7187 13 VVCIDEFDKM----REDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV 63 (214)
Q Consensus 13 v~~iDE~~~~----~~~~~~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~ 63 (214)
|++|||+..+ +.+..+.|.+.+..|. +.|+ ..|+||..|.
T Consensus 346 vvVIDE~~~L~~~~~~~~~~~L~~Iar~GR----a~GI-------hLIlaTQRPs 389 (574)
T 2iut_A 346 VVVVDEFADMMMIVGKKVEELIARIAQKAR----AAGI-------HLILATQRPS 389 (574)
T ss_dssp EEEESCCTTHHHHTCHHHHHHHHHHHHHCT----TTTE-------EEEEEESCCC
T ss_pred EEEEeCHHHHhhhhhHHHHHHHHHHHHHHh----hCCe-------EEEEEecCcc
Confidence 7999999976 3445556666666543 2444 6677888886
No 145
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=32.98 E-value=55 Score=23.79 Aligned_cols=35 Identities=9% Similarity=-0.100 Sum_probs=29.3
Q ss_pred cccCHHHHHHHHHHHHHHhc-cCCCCCCcHHHHHHHH
Q psy7187 176 IPITVRQLEAIVRIAESMAK-MQLEPFAIDSHVTEAL 211 (214)
Q Consensus 176 ~~~s~R~l~~lirlA~a~A~-l~~r~~V~~~Dv~~Ai 211 (214)
.++|++ +..++..|+..|+ -.+.++|+.+|+..|+
T Consensus 97 ~~~S~~-l~~vL~~A~~~A~l~~gd~~I~teHLLLAL 132 (171)
T 3zri_A 97 PAFSPL-LVELLQEAWLLSSTELEQAELRSGAIFLAA 132 (171)
T ss_dssp CEECHH-HHHHHHHHHHHHHTTTCCSSBCHHHHHHHH
T ss_pred CCcCHH-HHHHHHHHHHHHHHHcCCCEEcHHHHHHHH
Confidence 567765 7778999999999 6778899999999886
No 146
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=32.64 E-value=14 Score=27.66 Aligned_cols=60 Identities=8% Similarity=0.114 Sum_probs=35.6
Q ss_pred CceEeeccCCCC--CH-HHH--HHHHHhhhcCeEEEEecceEEEEeCceEEEEeecCCCCCCCCCcccccccCCCCCCCc
Q psy7187 11 GGVVCIDEFDKM--RE-DDR--VAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSR 85 (214)
Q Consensus 11 ~Gv~~iDE~~~~--~~-~~~--~~L~e~me~~~i~i~~~g~~~~lpa~~~viaa~Np~~g~~~~~~~~~~~~l~~~lldR 85 (214)
+.|++|||...+ +. +.+ ..++..++... +. ...||.+.+|. . .|..++.+|
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r----~~--------~~~iil~tq~~-~-----------~l~~~lr~r 143 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHR----HQ--------GIDIFVLTQGP-K-----------LLDQNLRTL 143 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTT----TT--------TCEEEEEESCG-G-----------GBCHHHHTT
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcC----cC--------CeEEEEECCCH-H-----------HHhHHHHHH
Confidence 899999999887 22 111 12444554322 11 24555555552 2 266778899
Q ss_pred ccEEEEecC
Q psy7187 86 FDMIFIIKD 94 (214)
Q Consensus 86 FDL~~~~~~ 94 (214)
++..+.+..
T Consensus 144 i~~~~~l~~ 152 (199)
T 2r2a_A 144 VRKHYHIAS 152 (199)
T ss_dssp EEEEEEEEE
T ss_pred hheEEEEcC
Confidence 988887765
No 147
>1f6v_A DNA transposition protein; MU phage, recombination, ATPase, DNA binding, high salt, solution structure, DNA binding protein; HET: DNA; NMR {Enterobacteria phage MU} SCOP: a.49.1.1
Probab=31.60 E-value=19 Score=23.55 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHH
Q psy7187 179 TVRQLEAIVRIAESMAKMQLEPFAIDSHVTEAL 211 (214)
Q Consensus 179 s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai 211 (214)
..|++..-+|||.-.|+=.+.. |+.+|+..|-
T Consensus 45 aLR~ltktLrLA~m~A~G~g~~-i~~~~I~~A~ 76 (91)
T 1f6v_A 45 ALRILNHSLRLAAMTAHGKGER-VNEDYLRQAF 76 (91)
T ss_dssp CHHHHHHHHGGGTCTTCTTSCC-SSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCc-CCHHHHHHHH
Confidence 5899999999999999988877 9999998884
No 148
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=30.76 E-value=42 Score=23.90 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=21.7
Q ss_pred cCCceEeeccCC--CCCHHHHHHHHHhhhc
Q psy7187 9 ADGGVVCIDEFD--KMREDDRVAIHEAMEQ 36 (214)
Q Consensus 9 a~~Gv~~iDE~~--~~~~~~~~~L~e~me~ 36 (214)
.+..++++||+. .+++.....|.+.++.
T Consensus 99 ~~~~llilDE~~~~~~~~~~~~~l~~ll~~ 128 (180)
T 3ec2_A 99 LNSPVLVLDDLGSERLSDWQRELISYIITY 128 (180)
T ss_dssp HTCSEEEEETCSSSCCCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCcCCHHHHHHHHHHHHH
Confidence 356799999998 5777777788877764
No 149
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=30.68 E-value=26 Score=26.29 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=25.0
Q ss_pred cceeeccCCceEeeccCCCCCHHHHHHHHHhhh
Q psy7187 3 GGAMVLADGGVVCIDEFDKMREDDRVAIHEAME 35 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~~~~~~~~~L~e~me 35 (214)
++...++.++++.+||.++|.-+....|.+--+
T Consensus 114 ~~~~~~tp~s~lIVD~AekLS~kE~~~Lld~A~ 146 (189)
T 2l8b_A 114 LEGMAFTPGSTVIVDQGEKLSLKETLTLLDGAA 146 (189)
T ss_dssp TTSCCCCCCCEEEEEESSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCEEEEechhhcCHHHHHHHHHHHH
Confidence 344456889999999999999887766666544
No 150
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=29.83 E-value=26 Score=23.55 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.7
Q ss_pred eeccCCCCCHHHHHHHHHhhhcCeEE
Q psy7187 15 CIDEFDKMREDDRVAIHEAMEQQTIS 40 (214)
Q Consensus 15 ~iDE~~~~~~~~~~~L~e~me~~~i~ 40 (214)
-|+-++.|+.++++.|++++++|.|.
T Consensus 77 ~i~G~~~L~~eDq~~i~~~~e~g~~~ 102 (106)
T 2dmj_A 77 EVDGFSELRWDDQQKVKKTAEAGGSG 102 (106)
T ss_dssp SEETTTTSCHHHHHHHHHHHHHCSSC
T ss_pred hCCChHHCCHHHHHHHHHHHHhCCCC
Confidence 47789999999999999999998754
No 151
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=28.64 E-value=62 Score=19.55 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=25.9
Q ss_pred ccCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHh
Q psy7187 177 PITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALR 212 (214)
Q Consensus 177 ~~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai~ 212 (214)
|.-+|+ .+-|-.+..|+-++.+.||.+.+.+|..
T Consensus 18 P~FVR~--kvrr~tE~~Are~G~~~IT~ev~~~AK~ 51 (63)
T 2kru_A 18 PFFVRK--KVRKNTDNYAREIGEPVVTADVFRKAKE 51 (63)
T ss_dssp CHHHHH--HHHHHHHHHHHHHTCSEECHHHHHHHHH
T ss_pred CHHHHH--HHHHHHHHHHHHcCCCeEcHHHHHHHHH
Confidence 444444 3347778899999999999999988864
No 152
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=27.40 E-value=53 Score=25.07 Aligned_cols=23 Identities=4% Similarity=0.086 Sum_probs=17.8
Q ss_pred HHhccCCCCCCcHHHHHHHHhcC
Q psy7187 192 SMAKMQLEPFAIDSHVTEALRLF 214 (214)
Q Consensus 192 a~A~l~~r~~V~~~Dv~~Ai~lf 214 (214)
..-|.++-+.|+++|+..|+.+|
T Consensus 104 ~~nraRG~~lVSp~Dl~~A~~~l 126 (218)
T 3cuq_B 104 LVNRARGMELLSPEDLVNACKML 126 (218)
T ss_dssp HHHHTCSSSCCCHHHHHHHHHTT
T ss_pred HHHHHcCCCCCCHHHHHHHHHHH
Confidence 34444577889999999999875
No 153
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=26.92 E-value=34 Score=25.04 Aligned_cols=17 Identities=18% Similarity=0.055 Sum_probs=15.1
Q ss_pred CCCCCcHHHHHHHHhcC
Q psy7187 198 LEPFAIDSHVTEALRLF 214 (214)
Q Consensus 198 ~r~~V~~~Dv~~Ai~lf 214 (214)
+.+.|+++|+..|+.+|
T Consensus 56 g~~lISp~Dl~~A~~~l 72 (169)
T 1u5t_B 56 GTGLISPMEMREACERF 72 (169)
T ss_dssp SSCCCCHHHHHHHHTTT
T ss_pred CCCccCHHHHHHHHHHH
Confidence 66899999999999875
No 154
>2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2, protein structure initiative, northeast ST genomics consortium, NESG; NMR {Rhodopseudomonas palustris} SCOP: b.173.1.1
Probab=26.09 E-value=38 Score=21.88 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=17.0
Q ss_pred cceeeccCCceEeeccCCC
Q psy7187 3 GGAMVLADGGVVCIDEFDK 21 (214)
Q Consensus 3 ~G~l~la~~Gv~~iDE~~~ 21 (214)
.|.+.|+||..+.|.+++.
T Consensus 56 GG~vtLaNGw~l~lp~l~~ 74 (87)
T 2jn4_A 56 GGKVTLANGWQLELPAMAA 74 (87)
T ss_dssp SSEEEETTSCEEECCCCSS
T ss_pred CcEEEECCccEEEeCCCCC
Confidence 6999999999999998864
No 155
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=25.35 E-value=55 Score=23.77 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=23.0
Q ss_pred cCHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHH
Q psy7187 178 ITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEAL 211 (214)
Q Consensus 178 ~s~R~l~~lirlA~a~A~l~~r~~V~~~Dv~~Ai 211 (214)
+|.+..+. +..|...|+-.+..+|+.+|+..|+
T Consensus 25 fT~~a~~a-L~~A~~~A~~~~h~~I~~EHLLlaL 57 (171)
T 3zri_A 25 LNAQSKLA-LEQAASLCIERQHPEVTLEHYLDVL 57 (171)
T ss_dssp BCHHHHHH-HHHHHHHHHHHTCSEECHHHHHHHH
T ss_pred cCHHHHHH-HHHHHHHHHHcCCCcccHHHHHHHH
Confidence 45554444 4567778888888888888887764
No 156
>1hyw_A GPW, head-TO-tail joining protein W; novel fold, two helices, one two-stranded beta-sheet, viral protein; NMR {Enterobacteria phage lambda} SCOP: d.186.1.1 PDB: 2l6q_A 2l6r_A
Probab=24.41 E-value=1.2e+02 Score=18.52 Aligned_cols=28 Identities=14% Similarity=0.329 Sum_probs=21.0
Q ss_pred HHHHHHHHHhh-----hcCeEEEEecceEEEEe
Q psy7187 24 EDDRVAIHEAM-----EQQTISIAKAGITTTLN 51 (214)
Q Consensus 24 ~~~~~~L~e~m-----e~~~i~i~~~g~~~~lp 51 (214)
...+..+.+++ -++.++|+.+|.+++|.
T Consensus 4 q~~L~~a~~A~~~L~tG~~~vsV~ydgr~V~Y~ 36 (68)
T 1hyw_A 4 QEELAAARAALHDLMTGKRVATVQKDGRRVEFT 36 (68)
T ss_dssp HHHHHHHHHHHHHHTTSCCCEEEECSSCEEEEC
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEECCEEEEEe
Confidence 34556666676 47999999999888875
No 157
>3u12_A USP37 protein; structural genomics, PH-domain, hydrolase, structural genomi consortium, SGC; 2.08A {Homo sapiens}
Probab=22.21 E-value=25 Score=24.91 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=27.9
Q ss_pred eeccCCceEeeccCCCCCHHHHHHHHHhhhcCeEE
Q psy7187 6 MVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTIS 40 (214)
Q Consensus 6 l~la~~Gv~~iDE~~~~~~~~~~~L~e~me~~~i~ 40 (214)
|.+-|+.++|||-++..+.+.+...++..-|..+.
T Consensus 90 LTlknn~fLfIdKLs~~DaeqLK~FLd~v~Qnk~q 124 (141)
T 3u12_A 90 LTLQDNSFLSIDKVPSKDAEEMRLFLDAVHQNRLP 124 (141)
T ss_dssp EEETTCCEEEEEEEEHHHHHHHHHHHHHHHTTC--
T ss_pred EEEecCcEEEEecCCHHHHHHHHHHHHHhcccCCC
Confidence 67889999999999988888888888877776653
No 158
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=21.62 E-value=46 Score=23.81 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhccCCCCCCcHHHH
Q psy7187 183 LEAIVRIAESMAKMQLEPFAIDSHV 207 (214)
Q Consensus 183 l~~lirlA~a~A~l~~r~~V~~~Dv 207 (214)
+.-|+.+|++.|+.++|+.|.+.|+
T Consensus 36 l~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 36 LYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp HHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred HHHHHHHHHHHHHhcCCCeeccccC
Confidence 5578899999999999999988875
No 159
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=21.44 E-value=71 Score=24.69 Aligned_cols=27 Identities=4% Similarity=-0.088 Sum_probs=20.4
Q ss_pred HHHHHHHhccCCCCCCcHHHHHHHHhc
Q psy7187 187 VRIAESMAKMQLEPFAIDSHVTEALRL 213 (214)
Q Consensus 187 irlA~a~A~l~~r~~V~~~Dv~~Ai~l 213 (214)
|.|...+.++.-...|+++|+..|+..
T Consensus 114 i~l~el~~~~~r~~~IS~dDi~rAik~ 140 (233)
T 1u5t_A 114 ISFQELEKVHFRKLNVGLDDLEKSIDM 140 (233)
T ss_dssp EEHHHHHHTTTTTTTCCHHHHHHHHHH
T ss_pred eEHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 445566666665589999999999864
No 160
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=20.82 E-value=1.2e+02 Score=19.81 Aligned_cols=14 Identities=14% Similarity=0.081 Sum_probs=12.4
Q ss_pred CCCHHHHHHHHHHH
Q psy7187 146 RLTHEAGEKLKNRY 159 (214)
Q Consensus 146 ~ls~ea~~~i~~~y 159 (214)
.+++++...|++.|
T Consensus 32 ~i~d~al~~iI~~Y 45 (94)
T 1qzm_A 32 TVDDSAIIGIIRYY 45 (94)
T ss_dssp EECHHHHHHHHHHH
T ss_pred eECHHHHHHHHHHh
Confidence 57899999999988
No 161
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=20.47 E-value=57 Score=23.61 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=22.7
Q ss_pred ccCCceEeeccC---CCCCHHHHHHHHHhhhc
Q psy7187 8 LADGGVVCIDEF---DKMREDDRVAIHEAMEQ 36 (214)
Q Consensus 8 la~~Gv~~iDE~---~~~~~~~~~~L~e~me~ 36 (214)
..+-.++++||+ +.+++.....|.+.+++
T Consensus 97 ~~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 97 KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp HCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred ccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 346689999994 45777888889998875
Done!