RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7187
(214 letters)
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
replication, MCM complex, AAA+ Pro ATP-binding,
DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Length = 595
Score = 337 bits (866), Expect = e-114
Identities = 99/215 (46%), Positives = 135/215 (62%), Gaps = 10/215 (4%)
Query: 1 MEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAA 60
+E GA+VLADGG+ IDE DKMR++DRVAIHEAMEQQT+SIAKAGI LN+R +V+AA
Sbjct: 382 LEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAG 441
Query: 61 NSVFGRWDDTKG-EQNIDFMPTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEI 119
N FGR+ + NI+ PTILSRFD+IFI+KD+ E +D LA +I+ VH
Sbjct: 442 NPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGE-QDRELANYILDVHS------ 494
Query: 120 DVASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPIT 179
++ + + L+KYI Y R P++T EA + + +V MR S E + I IT
Sbjct: 495 GKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSP--ILIT 552
Query: 180 VRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRLF 214
RQLEA++RI+E+ AKM L+ A+ +
Sbjct: 553 PRQLEALIRISEAYAKMALKAEVTREDAERAINIM 587
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family;
helicase, MCM homolog, DNA replication, ATP-binding,
DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Length = 506
Score = 270 bits (691), Expect = 4e-89
Identities = 61/217 (28%), Positives = 97/217 (44%), Gaps = 27/217 (12%)
Query: 1 MEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAA 60
+ GA VLADGG++ +D + E R A+ EAM++ T+++ LN+RC+VLAA
Sbjct: 291 LRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGI----ALNARCAVLAAI 346
Query: 61 NSVFGRWDDTKG-EQNIDFMPTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEI 119
N G + ID LS FD+I + + +
Sbjct: 347 N--PGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEV----------- 393
Query: 120 DVASDGELPLPVLKKYINYC-RMRCGPRLTHEAGEKLKNRYVLMRNGSKED-GEKKLNIP 177
+L++Y+ Y R P LT EA ++L++ Y R +E G +P
Sbjct: 394 -------PSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLP 446
Query: 178 ITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRLF 214
+T RQLE++ R+A++ A+M+L V A L
Sbjct: 447 VTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELV 483
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 40.9 bits (96), Expect = 2e-04
Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 11/94 (11%)
Query: 4 GAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV 63
G + A+ G + IDE + + + + + + + + G++ +R ++ + N
Sbjct: 138 GLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPE 197
Query: 64 FGRWDDTKGEQNIDFMPTILSRFDMIFIIKDEHD 97
G P +L RF + + D
Sbjct: 198 EGDLR-----------PQLLDRFGLSVEVLSPRD 220
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.018
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 18/43 (41%)
Query: 171 EKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213
EK+ +++L+A L+ +A DS AL +
Sbjct: 18 EKQ-----ALKKLQA-----------SLKLYADDS--APALAI 42
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.10
Identities = 19/135 (14%), Positives = 45/135 (33%), Gaps = 32/135 (23%)
Query: 77 DFMPTILSRFDMIFIIKDEHDETR-----DITLAK--HIMKVHMTAGQEIDVASDGELPL 129
D +ILS+ ++ II + + L+K +++ + I+
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN--------Y 91
Query: 130 PVLKKYINY-CRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGE--KKLNIPITVRQLEAI 186
L I R Y+ R+ D + K N+ R L+
Sbjct: 92 KFLMSPIKTEQRQPSMMT----------RMYIEQRDRLYNDNQVFAKYNVS---R-LQPY 137
Query: 187 VRIAESMAKMQLEPF 201
+++ +++ +++
Sbjct: 138 LKLRQALLELRPAKN 152
Score = 30.2 bits (67), Expect = 0.61
Identities = 28/211 (13%), Positives = 63/211 (29%), Gaps = 57/211 (27%)
Query: 34 MEQ-QTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKGEQNIDFMPTILSRFDMIFII 92
M +T + +T + L N VF +++ +SR +
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN--------------VSRLQPYLKL 140
Query: 93 KDEHDETRDITLAKHIMKVH-MT-AGQE---IDVASDGEL----PLPVLKKYINYCRMRC 143
+ E R AK+++ + + +G+ +DV ++ + ++N
Sbjct: 141 RQALLELRP---AKNVL-IDGVLGSGKTWVALDVCLSYKVQCKMDFKIF--WLNLKNCNS 194
Query: 144 GPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITVRQLEAIVR--IAESMAKMQL--- 198
E L+ + + NI + + ++A +R + + L
Sbjct: 195 ----PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 199 ---------EPFAI---------DSHVTEAL 211
F + VT+ L
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex;
HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia
coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A*
1eqr_A*
Length = 585
Score = 27.8 bits (63), Expect = 3.3
Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 149 HEAGEKLKNRYVLMRNGS-KEDGEKKLNIPITVRQLEAIVRIAESMAKMQLEPFAIDSHV 207
+ +L+N + + G+ + EK +N + ++E + + + + P +
Sbjct: 57 LKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNHVN 116
Query: 208 TEALRL 213
TE RL
Sbjct: 117 TEEARL 122
>3p43_A Putative uncharacterized protein; phosphoesterase, metalloenzyme,
hydrolase, manganese, beta B; 2.10A {Methanosarcina
barkeri str}
Length = 152
Score = 26.8 bits (59), Expect = 4.2
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 152 GEKLKNRYVLMRNGSKEDGE 171
G++LK YVL+R + +
Sbjct: 124 GKELKGIYVLIRTKYGKGEK 143
>3n9b_A Probable ATP-dependent DNA ligase; phosphoesterase, metalloenzyme,
NHEJ, manganese, BET; 1.92A {Pseudomonas aeruginosa}
PDB: 3n9d_A 2lj6_A
Length = 171
Score = 26.1 bits (57), Expect = 7.6
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 152 GEKLKNRYVLMRNGSKEDGE 171
GEKL R+ L+R +
Sbjct: 118 GEKLSGRWHLIRTNLRGKQS 137
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 26.6 bits (59), Expect = 8.2
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 4 GAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISI 41
G + A GV+ IDE + + ++ AM+++ I
Sbjct: 195 GMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPI 232
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.388
Gapped
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,363,259
Number of extensions: 200838
Number of successful extensions: 475
Number of sequences better than 10.0: 1
Number of HSP's gapped: 465
Number of HSP's successfully gapped: 18
Length of query: 214
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 124
Effective length of database: 4,188,903
Effective search space: 519423972
Effective search space used: 519423972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.6 bits)