RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7187
         (214 letters)



>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
           {Rhodobacter capsulatus [TaxId: 1061]}
          Length = 333

 Score = 47.6 bits (112), Expect = 3e-07
 Identities = 22/213 (10%), Positives = 64/213 (30%), Gaps = 26/213 (12%)

Query: 1   MEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAA 60
            E G +  A+ G + IDE + + +     + +  +     + + G++    +R  ++ + 
Sbjct: 118 FEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSG 177

Query: 61  NSVFGRWDDTKGEQNIDFMPTILSRFDMIFIIKDEHDETRDITLAKHIMKVHMTAGQEID 120
           N   G              P +L RF +   +    D    + + +           +  
Sbjct: 178 NPEEGDL-----------RPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDAD--PKAF 224

Query: 121 VASDGELPLPVLKKYINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLNIPITV 180
           +       + +  + +            + A        + + +               +
Sbjct: 225 LEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDG-------------L 271

Query: 181 RQLEAIVRIAESMAKMQLEPFAIDSHVTEALRL 213
           R    ++R A ++A ++        H+     +
Sbjct: 272 RGELTLLRSARALAALEGATAVGRDHLKRVATM 304


>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 233

 Score = 29.6 bits (66), Expect = 0.26
 Identities = 11/41 (26%), Positives = 16/41 (39%)

Query: 135 YINYCRMRCGPRLTHEAGEKLKNRYVLMRNGSKEDGEKKLN 175
           Y+NY R     +L  +       + V+ R G    G K  N
Sbjct: 59  YVNYARTEDFFKLERDMKINCSGKIVIARYGKVFRGNKVKN 99


>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
           (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
           63363]}
          Length = 247

 Score = 29.1 bits (65), Expect = 0.32
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 4   GAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAAN 61
           G   LADGG + +DE  ++  + +  +   +E       + G    +     +LAA N
Sbjct: 88  GFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFY--RLGGRKEIEVNVRILAATN 143


>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain
           (RecB), N-terminal domain {Escherichia coli [TaxId:
           562]}
          Length = 485

 Score = 26.2 bits (56), Expect = 3.7
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 46  ITTTLNSRCS--VLAAANSVFGRWDDTKGEQNIDFMP 80
            T   N R +  ++ + N +F + DD    + I F+P
Sbjct: 441 YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIP 477


>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 186

 Score = 25.2 bits (54), Expect = 6.2
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 70  TKGEQNIDFMPTILSRFDM-IFIIKDEHDETRDITLAKHIMKVHMTAGQE 118
           T  + N  F+ T+   F     +   +          K  +++  TAGQE
Sbjct: 26  TDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE 75


>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
           domain {Simian virus 40 [TaxId: 10633]}
          Length = 362

 Score = 25.0 bits (54), Expect = 7.8
 Identities = 15/127 (11%), Positives = 35/127 (27%), Gaps = 23/127 (18%)

Query: 13  VVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKG 72
              I+  D +R+    ++        +++ K  +          +   N           
Sbjct: 223 GQGINNLDNLRDYLDGSVK-------VNLEKKHLNKRTQIFPPGIVTMN----------- 264

Query: 73  EQNIDFMPTILSRFDM--IFIIKDEHDETRDITLAKHIMKVHMTAGQEIDVASDGELPLP 130
                   T+ +RF     F  KD      +      + K  + +G  + +      P+ 
Sbjct: 265 --EYSVPKTLQARFVKQIDFRPKDYLKHCLER-SEFLLEKRIIQSGIALLLMLIWYRPVA 321

Query: 131 VLKKYIN 137
              + I 
Sbjct: 322 EFAQSIQ 328


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0563    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 796,392
Number of extensions: 36394
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 11
Length of query: 214
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 132
Effective length of database: 1,281,736
Effective search space: 169189152
Effective search space used: 169189152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)