BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7189
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 28.9 bits (63), Expect = 0.75, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 52 LASLKRLSEDIYNKKYPRTFQTSASGLNGKECNTLLSQEFLDAM 95
L + R + D + ++P TS +G++G +TL+SQ +DA+
Sbjct: 505 LNGVTRNNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548
>pdb|4ESX|A Chain A, Crystal Structure Of C. Albicans Thi5 Complexed With Plp
pdb|4ESX|B Chain B, Crystal Structure Of C. Albicans Thi5 Complexed With Plp
Length = 342
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 34 FVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPR 69
+++N+KF E + +KK L ++KR ++ Y +PR
Sbjct: 206 YIANDKFIAENPQAVKKFLKAIKRATD--YMLAHPR 239
>pdb|4ESW|A Chain A, Crystal Structure Of C. Albicans Thi5 H66g Mutant
pdb|4ESW|B Chain B, Crystal Structure Of C. Albicans Thi5 H66g Mutant
Length = 342
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 34 FVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPR 69
+++N+KF E + +KK L ++KR ++ Y +PR
Sbjct: 206 YIANDKFIAENPQAVKKFLKAIKRATD--YMLAHPR 239
>pdb|3DZZ|A Chain A, Crystal Structure Of A Putative Plp-Dependent
Aminotransferase (Lbul_1103) From Lactobacillus
Delbrueckii Subsp. At 1.61 A Resolution
pdb|3DZZ|B Chain B, Crystal Structure Of A Putative Plp-Dependent
Aminotransferase (Lbul_1103) From Lactobacillus
Delbrueckii Subsp. At 1.61 A Resolution
Length = 391
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 16 GKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSED 61
G DF +YLRE T + N + E ++ NLA K L D
Sbjct: 332 GXNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLACPKELVID 377
>pdb|3Q2O|A Chain A, Crystal Structure Of Purk: N5-Carboxyaminoimidazole
Ribonucleotide Synthetase
pdb|3Q2O|B Chain B, Crystal Structure Of Purk: N5-Carboxyaminoimidazole
Ribonucleotide Synthetase
pdb|3QFF|A Chain A, Crystal Structure Of Adp Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3QFF|B Chain B, Crystal Structure Of Adp Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3R5H|A Chain A, Crystal Structure Of Adp-Air Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3R5H|B Chain B, Crystal Structure Of Adp-Air Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
Length = 389
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 56 KRLSEDIYNKKYPRTFQTSASGLNGKECNTLLSQEFLDAMRE 97
++L+E I YP +T+ G +GK L S+ +D R+
Sbjct: 137 EQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARK 178
>pdb|3V4S|A Chain A, Crystal Structure Of Adp-atp Complex Of Purk:
N5-carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3V4S|B Chain B, Crystal Structure Of Adp-atp Complex Of Purk:
N5-carboxyaminoimidazole Ribonucleotide Synthetase
Length = 387
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 56 KRLSEDIYNKKYPRTFQTSASGLNGKECNTLLSQEFLDAMRE 97
++L+E I YP +T+ G +GK L S+ +D R+
Sbjct: 137 EQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARK 178
>pdb|4DLK|A Chain A, Crystal Structure Of Atp-ca++ Complex Of Purk: N5-
Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|4DLK|B Chain B, Crystal Structure Of Atp-ca++ Complex Of Purk: N5-
Carboxyaminoimidazole Ribonucleotide Synthetase
Length = 380
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 56 KRLSEDIYNKKYPRTFQTSASGLNGKECNTLLSQEFLDAMRE 97
++L+E I YP +T+ G +GK L S+ +D R+
Sbjct: 131 EQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARK 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,907,476
Number of Sequences: 62578
Number of extensions: 100898
Number of successful extensions: 312
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 300
Number of HSP's gapped (non-prelim): 13
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)