BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7189
(120 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9BRT2|MNF1_HUMAN Mitochondrial nucleoid factor 1 OS=Homo sapiens GN=MNF1 PE=1 SV=1
Length = 126
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 48/94 (51%)
Query: 13 VGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQ 72
V E K+ RD YLR+ F + E E + SL RL + Y KYPR
Sbjct: 18 VDETKRGRDLGAYLRQRVAQAFREGENTQVAEPEACDQMYESLARLHSNYYKHKYPRPRD 77
Query: 73 TSASGLNGKECNTLLSQEFLDAMREDSKGMFSKL 106
TS SGL+ +E +LS + L+ ++E KGM+ KL
Sbjct: 78 TSFSGLSLEEYKLILSTDTLEELKEIDKGMWKKL 111
>sp|Q3SZ13|MNF1_BOVIN Mitochondrial nucleoid factor 1 OS=Bos taurus GN=MNF1 PE=2 SV=1
Length = 136
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 48/94 (51%)
Query: 13 VGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQ 72
V E K+ RD YLR+ F + E E + SL RL + Y KYPR +
Sbjct: 18 VDETKRGRDLGAYLRQRVAQAFREGENTQVAEPEACDEMYESLARLHSNYYKHKYPRPRE 77
Query: 73 TSASGLNGKECNTLLSQEFLDAMREDSKGMFSKL 106
TS SGL+ +E +LS + LD +E +KG + KL
Sbjct: 78 TSFSGLSLEEYKLILSTDTLDEFKEMNKGTWKKL 111
>sp|Q9CQY6|MNF1_MOUSE Mitochondrial nucleoid factor 1 OS=Mus musculus GN=Mnf1 PE=1 SV=1
Length = 136
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 47/94 (50%)
Query: 13 VGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQ 72
V E K+ RD YLR+ F I E E + SL RL + Y KYPR
Sbjct: 18 VDETKRGRDLGAYLRQRVAQAFREGENTQIAEPEACDQMYESLARLHSNYYKHKYPRPRD 77
Query: 73 TSASGLNGKECNTLLSQEFLDAMREDSKGMFSKL 106
TS SGL+ +E +LS + L+ +E +K M+ KL
Sbjct: 78 TSFSGLSVEEYKLILSTDTLEEFQEMNKSMWKKL 111
>sp|Q6PBU7|MNF1_DANRE Mitochondrial nucleoid factor 1 OS=Danio rerio GN=mnf1 PE=2 SV=1
Length = 129
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%)
Query: 15 EGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTS 74
E KK RD +LR+ + F I + E + SL R++ ++Y +K+PR TS
Sbjct: 20 ESKKGRDLGTFLRQRVASAFREGENTQISDPEKCDQMYESLARINSNVYKEKFPRAKDTS 79
Query: 75 ASGLNGKECNTLLSQEFLDAMREDSKGMFSKLFKR 109
+G+ +EC LL+ + E+ KG++ L +R
Sbjct: 80 FTGVTVEECRLLLATGSMQQTDEEKKGLWKTLMER 114
>sp|B5DFN3|MNF1_RAT Mitochondrial nucleoid factor 1 OS=Rattus norvegicus GN=Mnf1 PE=2
SV=1
Length = 136
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%)
Query: 13 VGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQ 72
V E K+ RD YLR+ F + E E + SL RL + Y KYPR
Sbjct: 18 VDETKRGRDLGAYLRQRVAQAFREGENTQVAEPEACDQMYESLARLHSNYYKHKYPRPRD 77
Query: 73 TSASGLNGKECNTLLSQEFLDAMREDSKGMFSKL 106
TS SGL+ +E +LS + L+ +E +K ++ KL
Sbjct: 78 TSFSGLSVEEYKLILSTDTLEEFQEMNKSVWRKL 111
>sp|Q0VFC7|MNF1_XENTR Mitochondrial nucleoid factor 1 OS=Xenopus tropicalis GN=mnf1 PE=2
SV=1
Length = 124
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 13 VGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQ 72
V E + RD ++R+ F +++ + + ASL R++ + Y +KYPR
Sbjct: 18 VDETRVGRDLGAFIRQRVAQAFREGESTQVDDPDACDEMYASLNRMNTNYYREKYPRLQD 77
Query: 73 TSASGLNGKECNTLLSQEFLDAMREDSKGMFSKLFKRKDKY 113
TS + + +E +L+ + L M E KGM+ +L +DK+
Sbjct: 78 TSFTEVTAEEYKMVLASDNLKQMEEMKKGMWKRL---RDKF 115
>sp|Q9UPN3|MACF1_HUMAN Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 OS=Homo
sapiens GN=MACF1 PE=1 SV=4
Length = 7388
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 17 KKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSAS 76
++ D ++ + RA + T ++ L+KN + LK L +DI N+ +F T
Sbjct: 3621 QQLEDLCSWVGQAERALAGHQGRTTQQDLSALQKNQSDLKDLQDDIQNRAT--SFATVVK 3678
Query: 77 GLNG--KECNTLLSQEFLDAMREDSKGMFSKLFKRKDKYK 114
+ G +E T LS L A+RE KL + K++Y+
Sbjct: 3679 DIEGFMEENQTKLSPRELTALRE-------KLHQAKEQYE 3711
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,193,637
Number of Sequences: 539616
Number of extensions: 1542093
Number of successful extensions: 5561
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 5551
Number of HSP's gapped (non-prelim): 42
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)