Query psy7189
Match_columns 120
No_of_seqs 53 out of 55
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 20:26:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7189.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7189hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lgh_B LH II, B800/850, light 55.2 5.2 0.00018 24.2 1.4 16 72-87 2-17 (45)
2 2bf9_A Pancreatic hormone; tur 46.5 22 0.00077 20.5 3.2 25 43-67 12-36 (36)
3 3hsr_A HTH-type transcriptiona 44.0 23 0.00079 23.3 3.5 44 15-62 96-139 (140)
4 2l60_A Peptide YY; GPCR ligand 42.1 24 0.00083 20.9 2.9 35 30-67 6-40 (41)
5 3nyb_A Poly(A) RNA polymerase 41.6 47 0.0016 26.1 5.5 63 17-80 12-74 (323)
6 4aik_A Transcriptional regulat 39.3 47 0.0016 22.6 4.6 46 15-62 92-137 (151)
7 1dx7_A Light-harvesting protei 38.8 6.1 0.00021 24.2 -0.1 16 72-87 5-20 (48)
8 1wrg_A LH-1, light-harvesting 36.9 9.4 0.00032 23.9 0.5 16 72-87 5-20 (55)
9 1bba_A Bovine pancreatic polyp 34.3 24 0.00083 20.4 2.0 25 43-67 12-36 (36)
10 3v53_A RNA-binding protein 25; 33.4 49 0.0017 23.4 3.9 82 11-117 34-117 (119)
11 3jw4_A Transcriptional regulat 32.9 59 0.002 21.3 4.1 45 15-61 103-147 (148)
12 1c7c_A Protein (deoxyhemoglobi 32.5 1.6E+02 0.0055 22.2 8.1 75 22-109 101-177 (283)
13 3eco_A MEPR; mutlidrug efflux 30.2 71 0.0024 20.5 4.1 45 15-61 93-137 (139)
14 3oop_A LIN2960 protein; protei 29.6 60 0.0021 21.0 3.7 44 16-61 98-141 (143)
15 1vjp_A MYO-inositol-1-phosphat 27.6 25 0.00085 29.7 1.8 19 11-29 63-82 (394)
16 3ech_A MEXR, multidrug resista 27.0 54 0.0019 21.3 3.1 45 15-61 97-141 (142)
17 3kp7_A Transcriptional regulat 25.5 96 0.0033 20.3 4.2 46 15-62 99-144 (151)
18 3deu_A Transcriptional regulat 24.9 89 0.003 21.3 4.0 46 15-62 114-159 (166)
19 2lgw_A DNAJ homolog subfamily 24.8 96 0.0033 20.2 4.0 32 4-35 22-54 (99)
20 2bv6_A MGRA, HTH-type transcri 24.1 59 0.002 21.0 2.8 42 16-61 98-139 (142)
21 3bro_A Transcriptional regulat 24.0 70 0.0024 20.5 3.2 44 16-61 97-140 (141)
22 3e21_A HFAF1, FAS-associated f 24.0 57 0.002 19.2 2.5 26 27-54 5-30 (45)
23 2fbh_A Transcriptional regulat 24.0 1.2E+02 0.0042 19.3 4.4 45 16-62 99-143 (146)
24 1nkz_B Light-harvesting protei 23.9 30 0.001 20.4 1.2 12 76-87 1-12 (41)
25 1f8p_A Neuropeptide Y (PNPY); 23.3 38 0.0013 19.6 1.5 29 36-67 8-36 (37)
26 2dmx_A DNAJ homolog subfamily 22.3 1.2E+02 0.0041 19.1 4.0 32 4-35 29-61 (92)
27 3nrv_A Putative transcriptiona 22.3 78 0.0027 20.5 3.2 45 15-61 100-144 (148)
28 3bja_A Transcriptional regulat 21.2 86 0.0029 19.9 3.1 44 16-61 94-137 (139)
29 1lj9_A Transcriptional regulat 21.1 1.1E+02 0.0037 19.6 3.7 44 16-61 90-133 (144)
30 2mev_4 Mengo virus coat protei 21.1 13 0.00043 24.5 -1.0 22 58-79 20-41 (70)
31 3vor_A CFA/III pilin; type IV 20.8 28 0.00096 26.6 0.7 41 49-89 54-112 (182)
32 2rdp_A Putative transcriptiona 20.3 96 0.0033 20.0 3.3 45 16-62 103-147 (150)
33 1oqv_A Toxin-coregulated pilus 20.1 30 0.001 26.6 0.7 43 47-89 61-119 (192)
No 1
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=55.19 E-value=5.2 Score=24.20 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=12.6
Q ss_pred CCccccccHHHHhhhc
Q psy7189 72 QTSASGLNGKECNTLL 87 (120)
Q Consensus 72 ~SsatGlt~eec~~vL 87 (120)
+.+.||||.+|++++=
T Consensus 2 ~~s~tGLT~~EA~EfH 17 (45)
T 1lgh_B 2 ERSLSGLTEEEAIAVH 17 (45)
T ss_dssp -CCSSSCCHHHHHHHH
T ss_pred CCCcCCCCHHHHHHHH
Confidence 3578999999998764
No 2
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=46.48 E-value=22 Score=20.53 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhccC
Q psy7189 43 EEEETLKKNLASLKRLSEDIYNKKY 67 (120)
Q Consensus 43 ~d~e~c~k~~~SL~rI~~N~y~~ky 67 (120)
+.+|++-+.|.+|.+-.|.+-+++|
T Consensus 12 A~~Eela~Y~~~LrhYiNlvTRqRy 36 (36)
T 2bf9_A 12 APVEDLIRFYNDLQQYLNVVTRHRX 36 (36)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHhccCC
Confidence 4789999999999999998887765
No 3
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=44.02 E-value=23 Score=23.29 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=34.6
Q ss_pred CCcccccHHHHHHHHHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhhh
Q psy7189 15 EGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDI 62 (120)
Q Consensus 15 ~tK~gRDLG~~lR~~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N~ 62 (120)
-|..|+++...+...+...+..- .+ +++..+.....|.+|..|-
T Consensus 96 LT~~G~~~~~~~~~~~~~~~~~~---~l-~~~e~~~l~~~L~~l~~~l 139 (140)
T 3hsr_A 96 LTEQGKAIKSPLAEISVKVFNEF---NI-SEREASDIINNLRNFVSKN 139 (140)
T ss_dssp ECHHHHHTHHHHHHHHHHHHHTS---CC-CHHHHHHHHHHHHHHHHTT
T ss_pred EChHHHHHHHHHHHHHHHHHHhc---CC-CHHHHHHHHHHHHHHHHhh
Confidence 46678888888888888777663 44 7788888999999888764
No 4
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=42.07 E-value=24 Score=20.91 Aligned_cols=35 Identities=20% Similarity=0.206 Sum_probs=27.5
Q ss_pred HHHHhhhCCCcChhhHHHHHHHHHHHHHhhhhhhhccC
Q psy7189 30 TRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKY 67 (120)
Q Consensus 30 v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N~y~~ky 67 (120)
...--.+|+. +.||++.+.|.+|.+-.|.+-+.+|
T Consensus 6 l~~P~~Pg~~---aspEela~Y~~~Lr~YinlvTR~Ry 40 (41)
T 2l60_A 6 LKKLERELKK---LSPEELNRYYASLRHYLNLVTRQRY 40 (41)
T ss_dssp HHHHHHHHTT---SCHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred cCCCCCCCCC---CCHHHHHHHHHHHHHHHHHhccccc
Confidence 3344556777 5889999999999999888877765
No 5
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=41.63 E-value=47 Score=26.15 Aligned_cols=63 Identities=10% Similarity=0.140 Sum_probs=45.2
Q ss_pred cccccHHHHHHHHHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhhhhhccCCCCCCCccccccH
Q psy7189 17 KKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNG 80 (120)
Q Consensus 17 K~gRDLG~~lR~~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N~y~~kyPR~~~SsatGlt~ 80 (120)
...+|+...|-+++......-.++.. +.+.-++.++.|+++....+-+--...+-|.++|+-.
T Consensus 12 ~~~~~~~~~L~~Ei~~f~~~i~Pt~e-E~~~R~~~~~~l~~~~~~~~p~~~v~~fGS~~~g~~~ 74 (323)
T 3nyb_A 12 SKQKEISDWLTFEIKDFVAYISPSRE-EIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDLYL 74 (323)
T ss_dssp TTCSSHHHHHHHHHHHHHHHTSCCHH-HHHHHHHHHHHHHHHHHTTCTTCCEEEESTTTTTCCC
T ss_pred cccchHHHHHHHHHHHHHHHhCcCHH-HHHHHHHHHHHHHHHHHHHCCCCEEEEeCccccCCCC
Confidence 35589999999999988877666533 4445566677777777776655445778899988765
No 6
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=39.32 E-value=47 Score=22.56 Aligned_cols=46 Identities=9% Similarity=0.052 Sum_probs=31.5
Q ss_pred CCcccccHHHHHHHHHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhhh
Q psy7189 15 EGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDI 62 (120)
Q Consensus 15 ~tK~gRDLG~~lR~~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N~ 62 (120)
-|..|+++-..+...+......=-. .+ +++..+.....|++|..|.
T Consensus 92 LT~~G~~~~~~~~~~~~~~~~~~~~-~l-~~ee~~~l~~~L~kl~~nl 137 (151)
T 4aik_A 92 LTEQSSPIIEQVDGVISSTRKEILG-GI-SSDEIAVLSGLIDKLEKNI 137 (151)
T ss_dssp ECGGGHHHHHHHHHHHHHHHHHHTT-TS-CHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHh-CC-CHHHHHHHHHHHHHHHHHH
Confidence 4778999888888777665543211 23 6677777778888887764
No 7
>1dx7_A Light-harvesting protein B-875-beta chain; bacteriochlorophyll binding, membrane protein, photosynthesis; NMR {Rhodobacter sphaeroides} SCOP: f.3.1.1 PDB: 1jo5_A
Probab=38.75 E-value=6.1 Score=24.18 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=13.2
Q ss_pred CCccccccHHHHhhhc
Q psy7189 72 QTSASGLNGKECNTLL 87 (120)
Q Consensus 72 ~SsatGlt~eec~~vL 87 (120)
+.+.||||.+|++++=
T Consensus 5 ~~s~tGLT~~EA~EfH 20 (48)
T 1dx7_A 5 DLGYTGLTDEQAQELH 20 (48)
T ss_dssp GGGHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHH
Confidence 4578999999998764
No 8
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=36.85 E-value=9.4 Score=23.91 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=13.2
Q ss_pred CCccccccHHHHhhhc
Q psy7189 72 QTSASGLNGKECNTLL 87 (120)
Q Consensus 72 ~SsatGlt~eec~~vL 87 (120)
+.+.||||.+|++++=
T Consensus 5 ~~s~tGLT~~EAqEfH 20 (55)
T 1wrg_A 5 QESLSGITEGEAKEFH 20 (55)
T ss_dssp SCTTHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHH
Confidence 4688999999998753
No 9
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=34.29 E-value=24 Score=20.39 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhccC
Q psy7189 43 EEEETLKKNLASLKRLSEDIYNKKY 67 (120)
Q Consensus 43 ~d~e~c~k~~~SL~rI~~N~y~~ky 67 (120)
+.||++-+.|.+|.+-.|.+-+++|
T Consensus 12 A~pEela~Y~~~Lr~YiNlvTRqRy 36 (36)
T 1bba_A 12 ATPEQMAQYAAELRRYINMLTRPRY 36 (36)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHhhcccC
Confidence 4679999999999999988877765
No 10
>3v53_A RNA-binding protein 25; PWI, RNA-binding domain; 2.90A {Homo sapiens}
Probab=33.39 E-value=49 Score=23.41 Aligned_cols=82 Identities=12% Similarity=0.054 Sum_probs=50.7
Q ss_pred Hh--hcCCcccccHHHHHHHHHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhhhhhccCCCCCCCccccccHHHHhhhcc
Q psy7189 11 YW--VGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNGKECNTLLS 88 (120)
Q Consensus 11 ~W--~D~tK~gRDLG~~lR~~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N~y~~kyPR~~~SsatGlt~eec~~vLS 88 (120)
.| +|++-..+-+-.+|.++|...+...+.+ .++=-++.|.. +| + -.--++++..+|.
T Consensus 34 ~W~~vd~~~i~~~lkPWI~kKI~E~LG~eEd~------LVdfI~~~L~~---------~~-----~-pk~l~~~L~~~LD 92 (119)
T 3v53_A 34 DWSIVDSILMERRIRPWINKKIIEYIGEEEAT------LVDFVCSKVMA---------HS-----S-PQSILDDVAMVLD 92 (119)
T ss_dssp CTTTSCHHHHHHTHHHHHHHHHHHHTC---CH------HHHHHHHHHHT---------TC-----C-HHHHHHHHHHHHT
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHhCCchHH------HHHHHHHHHHc---------CC-----C-HHHHHHHHHHHHH
Confidence 37 6776677888999999999999765554 34444444442 11 1 1244666777777
Q ss_pred HHHHHHHHhcchhHHHHHHhhHHHHhhhh
Q psy7189 89 QEFLDAMREDSKGMFSKLFKRKDKYKKDL 117 (120)
Q Consensus 89 ~e~l~~~~e~kk~~~kkl~~~k~~~~~~~ 117 (120)
.|.-.-+.+ +|.-|.---.+++-||
T Consensus 93 eeA~~FV~k----LWrlLIfe~ea~~~Gl 117 (119)
T 3v53_A 93 EEAEVFIVK----MWRLLIYETEAKKIGL 117 (119)
T ss_dssp THHHHHHHH----HHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHH----HHHHHHHHHHHHHcCc
Confidence 766666655 6776655566666665
No 11
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=32.90 E-value=59 Score=21.30 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=30.9
Q ss_pred CCcccccHHHHHHHHHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhh
Q psy7189 15 EGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSED 61 (120)
Q Consensus 15 ~tK~gRDLG~~lR~~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N 61 (120)
-|..|+.+...+...+...+..=-. .+ +++..+.....|++|..|
T Consensus 103 LT~~G~~~~~~~~~~~~~~~~~~~~-~l-~~~e~~~l~~~L~~l~~~ 147 (148)
T 3jw4_A 103 VLPKGAALVEEFNNIFLEVEESITK-GL-TKDEQKQLMSILIKVNRS 147 (148)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHTTT-TC-CHHHHHHHHHHHHHHHHT
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHHh
Confidence 4556888888877777666654222 23 667888888888888766
No 12
>1c7c_A Protein (deoxyhemoglobin (alpha chain)); heme, oxygen delivery vehicle, blood substitute, oxygen storage/transport complex; HET: HEM; 1.80A {Homo sapiens} SCOP: a.1.1.2 a.1.1.2 PDB: 1aby_A* 1abw_A* 1o1p_A* 1c7d_A* 1o1j_A* 1o1l_A* 1o1n_A* 1o1m_A*
Probab=32.51 E-value=1.6e+02 Score=22.21 Aligned_cols=75 Identities=17% Similarity=0.135 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhhhhhccCCCCCCCccccccHHHHhhhccHHHHH--HHHhcc
Q psy7189 22 FAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNGKECNTLLSQEFLD--AMREDS 99 (120)
Q Consensus 22 LG~~lR~~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N~y~~kyPR~~~SsatGlt~eec~~vLS~e~l~--~~~e~k 99 (120)
+|+.|-.-++..+.. ..+..-.+.|.+-|.-+..+....|. .+||.+|-..|.++=-.- ...+..
T Consensus 101 ~~~~Ll~~l~~~lg~--~~t~e~~~AW~~~~~~ia~~l~~~y~-----------m~lt~~~~~~v~~sw~~v~~~~~~~g 167 (283)
T 1c7c_A 101 LSHCLLVTLAAHLPA--EFTPAVHASLDKFLASVSTVLTSKYR-----------GVLSPADKTNVKAAWGKVGAHAGEYG 167 (283)
T ss_dssp HHHHHHHHHHHHCTT--TCCHHHHHHHHHHHHHHHHHHTTTTT-----------CSCCHHHHHHHHHHHHHHGGGHHHHH
T ss_pred HHHHHHHHHHHHhcc--cCCHHHHHHHHHHHHHHHHHHhhhhc-----------cCCCHHHHHHHHHHHHHhhcCHHHHH
Confidence 667777777777643 22222236799999999888876664 569999998887553211 123335
Q ss_pred hhHHHHHHhh
Q psy7189 100 KGMFSKLFKR 109 (120)
Q Consensus 100 k~~~kkl~~~ 109 (120)
..+|.+||..
T Consensus 168 ~~~~~rlF~~ 177 (283)
T 1c7c_A 168 AEALERMFLS 177 (283)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6788888875
No 13
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=30.24 E-value=71 Score=20.50 Aligned_cols=45 Identities=11% Similarity=0.026 Sum_probs=29.9
Q ss_pred CCcccccHHHHHHHHHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhh
Q psy7189 15 EGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSED 61 (120)
Q Consensus 15 ~tK~gRDLG~~lR~~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N 61 (120)
-|..|+.+...+...+...+..--. .+ +++..+.....|++|..|
T Consensus 93 LT~~G~~~~~~~~~~~~~~~~~~~~-~l-~~~e~~~l~~~l~~l~~~ 137 (139)
T 3eco_A 93 LTTSGIKLVEAFTSIFDEMEQTLVS-QL-SEEENEQMKANLTKMLSS 137 (139)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHT-TS-CHHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHHh
Confidence 3556888877777766655543111 23 668888888888888876
No 14
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=29.63 E-value=60 Score=21.04 Aligned_cols=44 Identities=23% Similarity=0.201 Sum_probs=29.8
Q ss_pred CcccccHHHHHHHHHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhh
Q psy7189 16 GKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSED 61 (120)
Q Consensus 16 tK~gRDLG~~lR~~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N 61 (120)
|..|+.+-..+...+...+..=-. .+ +++..+.....|++|..|
T Consensus 98 T~~G~~~~~~~~~~~~~~~~~~~~-~l-~~~e~~~l~~~L~~l~~~ 141 (143)
T 3oop_A 98 TDKGRKETTELRDIVEASCEKMFA-GV-TRTDLEQFTAILKNISTN 141 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTT-TC-CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHc-CC-CHHHHHHHHHHHHHHHHh
Confidence 556787777777766666544221 23 668888888888888766
No 15
>1vjp_A MYO-inositol-1-phosphate synthase-related protein; TM1419, structural genomics, JCSG, PSI, protein structure initiative; HET: NAD; 1.70A {Thermotoga maritima} PDB: 3cin_A*
Probab=27.57 E-value=25 Score=29.68 Aligned_cols=19 Identities=16% Similarity=0.329 Sum_probs=15.8
Q ss_pred Hh-hcCCcccccHHHHHHHH
Q psy7189 11 YW-VGEGKKYRDFAEYLREL 29 (120)
Q Consensus 11 ~W-~D~tK~gRDLG~~lR~~ 29 (120)
-| +|+.|+|+||.+.|-..
T Consensus 63 afDVd~~KVGkdl~eai~~~ 82 (394)
T 1vjp_A 63 SYDVDRAKIGKKLSEVVKQY 82 (394)
T ss_dssp EEECBTTTTTSBHHHHHHHH
T ss_pred EEeccccccCCcHHHHHhhC
Confidence 47 89999999999877654
No 16
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=26.97 E-value=54 Score=21.30 Aligned_cols=45 Identities=2% Similarity=-0.234 Sum_probs=29.9
Q ss_pred CCcccccHHHHHHHHHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhh
Q psy7189 15 EGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSED 61 (120)
Q Consensus 15 ~tK~gRDLG~~lR~~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N 61 (120)
-|..|+.+...+...+...+..=- ..+ +++..+.....|++|..|
T Consensus 97 LT~~G~~~~~~~~~~~~~~~~~~~-~~l-~~~e~~~l~~~l~~l~~~ 141 (142)
T 3ech_A 97 LTDEGLAIHLHAELIMSRVHDELF-APL-TPVEQATLVHLLDQCLAA 141 (142)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHH-TTS-CHHHHHHHHHHHHHHHHT
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHH-hcC-CHHHHHHHHHHHHHHHhc
Confidence 455677777777776665554311 123 678888888888888876
No 17
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=25.46 E-value=96 Score=20.28 Aligned_cols=46 Identities=9% Similarity=0.094 Sum_probs=29.3
Q ss_pred CCcccccHHHHHHHHHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhhh
Q psy7189 15 EGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDI 62 (120)
Q Consensus 15 ~tK~gRDLG~~lR~~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N~ 62 (120)
-|..|+++...+...+...+..=-. .+ +++..+.....|.+|..|.
T Consensus 99 lT~~G~~~~~~~~~~~~~~~~~~~~-~l-~~~e~~~l~~~l~~l~~~l 144 (151)
T 3kp7_A 99 LSNKGKKYIKERKAIMSHIASDMTS-DF-DSKEIEKVRQVLEIIDYRI 144 (151)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTTT-TS-CHHHHHHHHHHHHHHHHHH
T ss_pred ECHhHHHHHHHHHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHHHH
Confidence 4556888877777776666543222 23 5677777777777777653
No 18
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=24.86 E-value=89 Score=21.25 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=31.1
Q ss_pred CCcccccHHHHHHHHHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhhh
Q psy7189 15 EGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDI 62 (120)
Q Consensus 15 ~tK~gRDLG~~lR~~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N~ 62 (120)
-|..|+++...+...+...+..=-. .+ +++..+.....|++|..|.
T Consensus 114 LT~~G~~~~~~~~~~~~~~~~~~~~-~l-~~~e~~~l~~~L~~l~~~l 159 (166)
T 3deu_A 114 LTEKAEPLIAEMEEVIHKTRGEILA-GI-SSEEIELLIKLIAKLEHNI 159 (166)
T ss_dssp ECGGGHHHHHHHHHHHHHHHHHHHT-TC-CHHHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHc-CC-CHHHHHHHHHHHHHHHHHH
Confidence 4677898888887777666543211 23 6677777788888777664
No 19
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=24.82 E-value=96 Score=20.24 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=24.6
Q ss_pred HHHHHHHHh-hcCCcccccHHHHHHHHHHHHhh
Q psy7189 4 LYQVVVIYW-VGEGKKYRDFAEYLRELTRAQFV 35 (120)
Q Consensus 4 ~fl~L~e~W-~D~tK~gRDLG~~lR~~v~~~F~ 35 (120)
+|.+|+.+| .|.....++.++-.-++|..|+.
T Consensus 22 aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~ 54 (99)
T 2lgw_A 22 AYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYE 54 (99)
T ss_dssp HHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHH
Confidence 588999999 99887666666666677777774
No 20
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=24.06 E-value=59 Score=20.98 Aligned_cols=42 Identities=10% Similarity=0.096 Sum_probs=27.8
Q ss_pred CcccccHHHHHHHHHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhh
Q psy7189 16 GKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSED 61 (120)
Q Consensus 16 tK~gRDLG~~lR~~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N 61 (120)
|..|+.+...+...+......= .+ +++..+.....|++|..|
T Consensus 98 T~~G~~~~~~~~~~~~~~~~~~---~l-~~~e~~~l~~~l~~~~~~ 139 (142)
T 2bv6_A 98 TDKSETIRPELSNASDKVASAS---SL-SQDEVKELNRLLGKVIHA 139 (142)
T ss_dssp CHHHHHHHHHHTTHHHHHHHHT---TC-CHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHh---CC-CHHHHHHHHHHHHHHHHH
Confidence 4557777777776666555432 34 667777788888887765
No 21
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=24.03 E-value=70 Score=20.46 Aligned_cols=44 Identities=16% Similarity=0.117 Sum_probs=27.5
Q ss_pred CcccccHHHHHHHHHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhh
Q psy7189 16 GKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSED 61 (120)
Q Consensus 16 tK~gRDLG~~lR~~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N 61 (120)
|..|+.+...+...+......--. .+ +++..+.....|++|..|
T Consensus 97 T~~G~~~~~~~~~~~~~~~~~~~~-~l-~~~e~~~l~~~l~~l~~n 140 (141)
T 3bro_A 97 TKKANKLETIILSYMDSDQSQMTS-GL-NKEEVVFLEKILKRMIES 140 (141)
T ss_dssp CHHHHTTHHHHHHHHHHHHHHHTT-TC-CHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHhc
Confidence 455777777776665554443111 23 567777778888887765
No 22
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=23.99 E-value=57 Score=19.19 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=18.9
Q ss_pred HHHHHHHhhhCCCcChhhHHHHHHHHHH
Q psy7189 27 RELTRAQFVSNNKFTIEEEETLKKNLAS 54 (120)
Q Consensus 27 R~~v~~~F~~g~~t~~~d~e~c~k~~~S 54 (120)
|+++-+.|.. .|-++|++.|...|+|
T Consensus 5 ~de~ia~F~~--iTG~~d~~~A~~~Lea 30 (45)
T 3e21_A 5 REMILADFQA--CTGIENIDEAITLLEQ 30 (45)
T ss_dssp HHHHHHHHHH--HHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHCCCCHHHHHHHHHH
Confidence 5667777764 5666677888888876
No 23
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=23.97 E-value=1.2e+02 Score=19.25 Aligned_cols=45 Identities=11% Similarity=0.025 Sum_probs=29.6
Q ss_pred CcccccHHHHHHHHHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhhh
Q psy7189 16 GKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDI 62 (120)
Q Consensus 16 tK~gRDLG~~lR~~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N~ 62 (120)
|..|+++...+...+...+..--. .+ +++..+.....|.+|..|.
T Consensus 99 T~~G~~~~~~~~~~~~~~~~~~~~-~l-~~~e~~~l~~~l~~l~~~l 143 (146)
T 2fbh_A 99 TPKADVLIADIEAIAASVRNDVLT-GI-DESEQALCQQVLLRILANL 143 (146)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTT-TC-CHHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHc-CC-CHHHHHHHHHHHHHHHHHH
Confidence 566888887777666655543211 23 6677788888888887663
No 24
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=23.89 E-value=30 Score=20.36 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=9.8
Q ss_pred ccccHHHHhhhc
Q psy7189 76 SGLNGKECNTLL 87 (120)
Q Consensus 76 tGlt~eec~~vL 87 (120)
+|||.+|++++=
T Consensus 1 ~gLT~~EA~EfH 12 (41)
T 1nkz_B 1 ATLTAEQSEELH 12 (41)
T ss_dssp CCCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 699999998764
No 25
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=23.25 E-value=38 Score=19.64 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=23.0
Q ss_pred hCCCcChhhHHHHHHHHHHHHHhhhhhhhccC
Q psy7189 36 SNNKFTIEEEETLKKNLASLKRLSEDIYNKKY 67 (120)
Q Consensus 36 ~g~~t~~~d~e~c~k~~~SL~rI~~N~y~~ky 67 (120)
+|+. +.+|++-+.|.+|.+-.|.+-+++|
T Consensus 8 Pg~~---a~pEela~Y~~~Lr~YinlvTRqRy 36 (37)
T 1f8p_A 8 PGED---APAEDLARYYSALRHYINLITRQRY 36 (37)
T ss_dssp CCSS---CTTTTHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCC---CCHHHHHHHHHHHHHHHHHhccccc
Confidence 4555 4779999999999998888777665
No 26
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.32 E-value=1.2e+02 Score=19.07 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=21.2
Q ss_pred HHHHHHHHh-hcCCcccccHHHHHHHHHHHHhh
Q psy7189 4 LYQVVVIYW-VGEGKKYRDFAEYLRELTRAQFV 35 (120)
Q Consensus 4 ~fl~L~e~W-~D~tK~gRDLG~~lR~~v~~~F~ 35 (120)
+|.+|+.+| .|......+.++..-++|..|+.
T Consensus 29 ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~ 61 (92)
T 2dmx_A 29 AYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYE 61 (92)
T ss_dssp HHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHH
Confidence 588888899 88876544445555556666664
No 27
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=22.31 E-value=78 Score=20.53 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=28.3
Q ss_pred CCcccccHHHHHHHHHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhh
Q psy7189 15 EGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSED 61 (120)
Q Consensus 15 ~tK~gRDLG~~lR~~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N 61 (120)
-|..|+.+...+...+...+..--. .+ +++..+.....|.+|..|
T Consensus 100 lT~~G~~~~~~~~~~~~~~~~~~~~-~l-~~~e~~~l~~~l~~l~~~ 144 (148)
T 3nrv_A 100 LTEMGQELYEVASDFAIEREKQLLE-EF-EEAEKDQLFILLKKLRNK 144 (148)
T ss_dssp ECHHHHHHHHHHHHHTHHHHHHHTT-TC-CHHHHHHHHHHHHHHHHH
T ss_pred ECHhHHHHHHHHHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHHHHH
Confidence 4556777777777666555443211 23 667777777777777765
No 28
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=21.17 E-value=86 Score=19.88 Aligned_cols=44 Identities=11% Similarity=-0.087 Sum_probs=26.4
Q ss_pred CcccccHHHHHHHHHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhh
Q psy7189 16 GKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSED 61 (120)
Q Consensus 16 tK~gRDLG~~lR~~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N 61 (120)
|..|+.+...+...+...+..=- ..+ +++..+.....|++|..|
T Consensus 94 T~~G~~~~~~~~~~~~~~~~~~~-~~l-~~~e~~~l~~~l~~l~~~ 137 (139)
T 3bja_A 94 TKKGEETKKQVDVQYSDFLKENC-GCF-TKEEEGILEDLLLKWKKH 137 (139)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-CCS-CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-hcC-CHHHHHHHHHHHHHHHHh
Confidence 44577776666655544443211 123 567777778888887765
No 29
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=21.14 E-value=1.1e+02 Score=19.62 Aligned_cols=44 Identities=9% Similarity=0.061 Sum_probs=23.5
Q ss_pred CcccccHHHHHHHHHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhh
Q psy7189 16 GKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSED 61 (120)
Q Consensus 16 tK~gRDLG~~lR~~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N 61 (120)
|..|+.+...+...+...+..--. .+ +++..+.....|.+|..|
T Consensus 90 T~~G~~~~~~~~~~~~~~~~~~~~-~l-~~~e~~~l~~~l~~l~~~ 133 (144)
T 1lj9_A 90 TEKGKNVYPIIVRENQHSNQVALQ-GL-SEVEISQLADYLVRMRKN 133 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTT-TC-CHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHHh
Confidence 344666666665555444332111 23 556666666666666655
No 30
>2mev_4 Mengo virus coat protein (subunit VP4); cardio picornavirus coat protein, icosahedral virus; 3.00A {Mengo virus} SCOP: b.121.4.1 PDB: 1mec_4
Probab=21.12 E-value=13 Score=24.50 Aligned_cols=22 Identities=18% Similarity=0.474 Sum_probs=18.6
Q ss_pred hhhhhhhccCCCCCCCcccccc
Q psy7189 58 LSEDIYNKKYPRTFQTSASGLN 79 (120)
Q Consensus 58 I~~N~y~~kyPR~~~SsatGlt 79 (120)
|.+|+|.+.|-..-|.++.+..
T Consensus 20 ivnN~Y~n~YqnSiD~sa~~~~ 41 (70)
T 2mev_4 20 IINNFYSNQYQNSIDLSANATG 41 (70)
T ss_dssp SSCCSSCHHHHSCCCCCCCTTC
T ss_pred eeehhhhhhhhccccccccccC
Confidence 7899999999999998876543
No 31
>3vor_A CFA/III pilin; type IV pilin, colonization, cell adhesion; 0.90A {Escherichia coli} PDB: 3s0t_A*
Probab=20.79 E-value=28 Score=26.57 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhhhhhhccC----------CCCCCCc--------cccccHHHHhhhccH
Q psy7189 49 KKNLASLKRLSEDIYNKKY----------PRTFQTS--------ASGLNGKECNTLLSQ 89 (120)
Q Consensus 49 ~k~~~SL~rI~~N~y~~ky----------PR~~~Ss--------atGlt~eec~~vLS~ 89 (120)
--.|=||-+|+.++-++.| |+....+ +-|||-|||+-|+++
T Consensus 54 ~a~LV~LGKIS~dEa~N~fsg~~~~I~~~~~~~~a~~nKgFaI~v~GLtq~QCrslit~ 112 (182)
T 3vor_A 54 VAQLVQLGKLTPDEARNGISGDYIGIGGAITSSGSTINKGFAMELNGLSQEQCRSILGQ 112 (182)
T ss_dssp HHHHHHTTSCCGGGGEETTTTEECEEEEEESSTTCCSCCEEEEEEEEECHHHHHHHHHH
T ss_pred hhhhhhcCCcCHHHhcCCCCCCceeecccccccccccccceEEEECCcCHHHHHHHHHh
Confidence 3458899999998888754 3333332 359999999999865
No 32
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=20.33 E-value=96 Score=20.04 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=28.4
Q ss_pred CcccccHHHHHHHHHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhhh
Q psy7189 16 GKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDI 62 (120)
Q Consensus 16 tK~gRDLG~~lR~~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N~ 62 (120)
|..|+++...+...+...+..=- ..+ +++..+.....|.+|..|.
T Consensus 103 T~~G~~~~~~~~~~~~~~~~~~~-~~l-~~~e~~~l~~~l~~l~~~l 147 (150)
T 2rdp_A 103 LEKGERIIEEVIEKRQRDLANVL-ESF-SDEEIVVFERCLRKLHQEM 147 (150)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHG-GGS-CHHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHHHHHHHH-HcC-CHHHHHHHHHHHHHHHHHH
Confidence 45677777777766655443211 123 6677788888888887664
No 33
>1oqv_A Toxin-coregulated pilus subunit; TCPA, type IV pilin, pilin, pilus filament, forming protein, adhesin, fimbriae, cell adhesion; 1.30A {Vibrio cholerae} SCOP: d.24.1.2 PDB: 3hrv_A
Probab=20.11 E-value=30 Score=26.63 Aligned_cols=43 Identities=30% Similarity=0.484 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCC--------CC--------ccccccHHHHhhhccH
Q psy7189 47 TLKKNLASLKRLSEDIYNKKYPRTF--------QT--------SASGLNGKECNTLLSQ 89 (120)
Q Consensus 47 ~c~k~~~SL~rI~~N~y~~kyPR~~--------~S--------satGlt~eec~~vLS~ 89 (120)
..--.|=||-+|+.++-++.|.-.. ++ .+-|||-|||+-|+++
T Consensus 61 ~lta~LVsLGKIS~dEakNpfsG~~m~I~~~~~n~a~nKgFaI~vnGLtqeQCrslitq 119 (192)
T 1oqv_A 61 KLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGLTQAQCKTLITS 119 (192)
T ss_dssp HHHHHHHHTTSSCHHHHBCTTTSSBCEEEEEEETTEEEEEEEEEEEEECHHHHHHHHHH
T ss_pred hhHHHHHhccCcCHHHhcCCCCCCceeeccccccccccceeEEEECCcCHHHHHHHHHh
Confidence 4566778899999999888774432 11 2469999999999864
Done!