Query psy7189
Match_columns 120
No_of_seqs 53 out of 55
Neff 4.4
Searched_HMMs 13730
Date Fri Aug 16 20:26:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7189.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7189hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jo5a_ f.3.1.1 (A:) Light-har 55.7 2 0.00015 25.0 1.1 17 71-87 4-20 (48)
2 d1n7oa1 a.102.3.2 (A:170-540) 42.7 22 0.0016 27.0 5.8 54 13-66 60-115 (371)
3 d1x1ia1 a.102.3.2 (A:26-386) X 42.5 18 0.0013 27.3 5.2 48 18-65 64-113 (361)
4 d3deua1 a.4.5.28 (A:2-141) Tra 41.2 16 0.0012 22.8 4.0 46 15-62 92-137 (140)
5 d1iura_ a.2.3.1 (A:) Hypotheti 40.5 15 0.0011 22.6 3.7 31 4-34 36-67 (88)
6 d3broa1 a.4.5.28 (A:3-137) Tra 40.3 11 0.00084 23.4 3.2 44 16-61 92-135 (135)
7 d1f1sa1 a.102.3.2 (A:249-619) 38.0 24 0.0017 26.8 5.2 53 13-65 59-113 (371)
8 d1lghb_ f.3.1.1 (B:) Light-har 37.5 6.5 0.00047 22.2 1.3 14 74-87 2-15 (43)
9 d2etha1 a.4.5.28 (A:1-140) Put 32.1 18 0.0013 22.6 3.1 45 16-62 93-137 (140)
10 d1husa_ a.75.1.1 (A:) Ribosoma 29.8 30 0.0022 22.8 4.1 31 6-36 88-121 (139)
11 d2lhba_ a.1.1.2 (A:) Lamprey g 28.7 30 0.0022 22.0 3.9 42 68-109 1-44 (149)
12 d2igsa1 d.2.1.11 (A:4-215) Hyp 27.3 58 0.0042 23.1 5.4 91 6-96 31-172 (212)
13 d1gr0a1 c.2.1.3 (A:14-200,A:31 26.7 8.5 0.00062 28.7 0.7 16 11-26 54-70 (243)
14 d2fbha1 a.4.5.28 (A:8-144) Tra 25.6 50 0.0036 20.2 4.4 45 15-61 89-133 (137)
15 d1s3ja_ a.4.5.28 (A:) Putative 23.4 32 0.0023 21.4 3.1 45 16-62 96-140 (143)
16 d1oqva_ d.24.1.2 (A:) Toxin-co 23.0 11 0.00082 26.7 0.7 64 26-89 15-98 (171)
17 d1lj9a_ a.4.5.28 (A:) Transcri 22.6 43 0.0031 21.0 3.7 44 16-61 90-133 (144)
18 g1avo.1 a.24.8.1 (A:,B:) Prote 22.2 50 0.0037 23.4 4.3 63 6-70 86-152 (200)
19 d1tada1 a.66.1.1 (A:57-177) Tr 21.2 30 0.0022 21.8 2.6 44 18-63 59-107 (121)
20 d1rwha1 a.102.3.2 (A:4-372) Ch 21.1 69 0.005 24.0 5.2 46 21-66 68-115 (369)
21 d1wtya_ a.24.16.2 (A:) Probabl 20.2 44 0.0032 21.4 3.3 52 2-65 37-90 (116)
No 1
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=55.72 E-value=2 Score=24.96 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=13.9
Q ss_pred CCCccccccHHHHhhhc
Q psy7189 71 FQTSASGLNGKECNTLL 87 (120)
Q Consensus 71 ~~SsatGlt~eec~~vL 87 (120)
.+-|.||||.+|++++=
T Consensus 4 ~~~s~tGLT~~EA~E~H 20 (48)
T d1jo5a_ 4 SDLGYTGLTDEQAQELH 20 (48)
T ss_dssp CGGGTGGGHHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHH
Confidence 35688999999998764
No 2
>d1n7oa1 a.102.3.2 (A:170-540) Hyaluronate lyase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=42.75 E-value=22 Score=27.04 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=42.2
Q ss_pred hcCCcccccHHHHHHH--HHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhhhhhcc
Q psy7189 13 VGEGKKYRDFAEYLRE--LTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKK 66 (120)
Q Consensus 13 ~D~tK~gRDLG~~lR~--~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N~y~~k 66 (120)
++....+-|++.+++. .++.+++.....---|++..+..+.+|+.++.|.|...
T Consensus 60 l~~~~~~~~~~~~~~rL~~mA~ay~~pgs~lY~d~~l~~~I~~al~~l~~~~y~~~ 115 (371)
T d1n7oa1 60 FSNYKTSANLTATYRKLEEMAKQVTNPSSRYYQDETVVRTVRDSMEWMHKHVYNSE 115 (371)
T ss_dssp GCCTTSTHHHHHHHHHHHHHHHHHTCTTSTTTTCHHHHHHHHHHHHHHHHHTSSTT
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHHHHcCCCCC
Confidence 4555577889988874 56777776555555699999999999999999998543
No 3
>d1x1ia1 a.102.3.2 (A:26-386) Xanthan lyase {Bacillus sp. gl1 [TaxId: 84635]}
Probab=42.46 E-value=18 Score=27.35 Aligned_cols=48 Identities=10% Similarity=0.049 Sum_probs=37.5
Q ss_pred ccccHHHHHH--HHHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhhhhhc
Q psy7189 18 KYRDFAEYLR--ELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNK 65 (120)
Q Consensus 18 ~gRDLG~~lR--~~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N~y~~ 65 (120)
...+++.+++ ..++.+++.....--.|++..+..+.+|+.++.|.|..
T Consensus 64 ~~~~l~~~~~rl~~mA~Ay~~pgs~ly~d~~l~~~I~~al~~~~~~~y~~ 113 (361)
T d1x1ia1 64 TSDNVNAVYERLRTMALAATTVGSSLYGNADLKEDILDALDWLYVNSYNS 113 (361)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSTTCTTTTCHHHHHHHHHHHHHHHHHTSST
T ss_pred chhHHHHHHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHHHHHHHcCCCC
Confidence 3456777877 56788887665554569999999999999999998853
No 4
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}
Probab=41.20 E-value=16 Score=22.84 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=32.2
Q ss_pred CCcccccHHHHHHHHHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhhh
Q psy7189 15 EGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDI 62 (120)
Q Consensus 15 ~tK~gRDLG~~lR~~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N~ 62 (120)
-|..|+++-..+...+......=-. .+ ++++-+....-|++|..|.
T Consensus 92 lT~~G~~~~~~~~~~~~~~~~~~~~-~l-~~ee~~~~~~~L~~i~~nl 137 (140)
T d3deua1 92 LTEKAEPLIAEMEEVIHKTRGEILA-GI-SSEEIELLIKLIAKLEHNI 137 (140)
T ss_dssp ECGGGHHHHHHHHHHHHHHHHHHHT-TC-CHHHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHh-CC-CHHHHHHHHHHHHHHHHHH
Confidence 4667888888887777665543222 33 7788888888888888774
No 5
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.46 E-value=15 Score=22.62 Aligned_cols=31 Identities=10% Similarity=0.257 Sum_probs=21.5
Q ss_pred HHHHHHHHh-hcCCcccccHHHHHHHHHHHHh
Q psy7189 4 LYQVVVIYW-VGEGKKYRDFAEYLRELTRAQF 34 (120)
Q Consensus 4 ~fl~L~e~W-~D~tK~gRDLG~~lR~~v~~~F 34 (120)
+|-+|+-+| .|.+..+.|.++-.=++|..|+
T Consensus 36 AYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay 67 (88)
T d1iura_ 36 IIRRLYLKWHPDKNPENHDIANEVFKHLQNEI 67 (88)
T ss_dssp HHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccchhhHHHHHHHHHHHHH
Confidence 688899999 9987777766654444454444
No 6
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=40.35 E-value=11 Score=23.41 Aligned_cols=44 Identities=16% Similarity=0.117 Sum_probs=29.9
Q ss_pred CcccccHHHHHHHHHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhh
Q psy7189 16 GKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSED 61 (120)
Q Consensus 16 tK~gRDLG~~lR~~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N 61 (120)
|..|+++.+.+...+......=-. .+ +++..+...+-|++|..|
T Consensus 92 T~~G~~~~~~~~~~~~~~~~~~~~-~l-~~ee~~~~~~~L~~l~~N 135 (135)
T d3broa1 92 TKKANKLETIILSYMDSDQSQMTS-GL-NKEEVVFLEKILKRMIES 135 (135)
T ss_dssp CHHHHTTHHHHHHHHHHHHHHHTT-TC-CHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh-CC-CHHHHHHHHHHHHHHHcC
Confidence 456888777777666555433222 24 668888899999998876
No 7
>d1f1sa1 a.102.3.2 (A:249-619) Hyaluronate lyase {Streptococcus agalactiae [TaxId: 1311]}
Probab=37.96 E-value=24 Score=26.85 Aligned_cols=53 Identities=15% Similarity=0.197 Sum_probs=40.6
Q ss_pred hcCCcccccHHHHHHH--HHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhhhhhc
Q psy7189 13 VGEGKKYRDFAEYLRE--LTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNK 65 (120)
Q Consensus 13 ~D~tK~gRDLG~~lR~--~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N~y~~ 65 (120)
+|....+-|++.+++. .++.+++.....--.|++..+..+.+|+.++.|.|..
T Consensus 59 l~~~~~s~~~~~~~~rL~~mA~aY~~pgs~ly~d~~l~~~I~~aL~~l~~~~y~~ 113 (371)
T d1f1sa1 59 LDNLNNSAQLTATYRRLEDLAKQITNPHSTIYKNEKAIRTVKESLAWLHQNFYNV 113 (371)
T ss_dssp GCCTTSHHHHHHHHHHHHHHHHHHTCTTSTTTTCHHHHHHHHHHHHHHHHHTSST
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4444567789999885 4666776655555569999999999999999998864
No 8
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=37.46 E-value=6.5 Score=22.17 Aligned_cols=14 Identities=36% Similarity=0.394 Sum_probs=11.7
Q ss_pred ccccccHHHHhhhc
Q psy7189 74 SASGLNGKECNTLL 87 (120)
Q Consensus 74 satGlt~eec~~vL 87 (120)
|.||||-+|.+++=
T Consensus 2 S~sGLT~~EA~EfH 15 (43)
T d1lghb_ 2 SLSGLTEEEAIAVH 15 (43)
T ss_dssp CSSSCCHHHHHHHH
T ss_pred CCCcCCHHHHHHHH
Confidence 68999999987754
No 9
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=32.10 E-value=18 Score=22.61 Aligned_cols=45 Identities=16% Similarity=0.131 Sum_probs=30.1
Q ss_pred CcccccHHHHHHHHHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhhh
Q psy7189 16 GKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDI 62 (120)
Q Consensus 16 tK~gRDLG~~lR~~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N~ 62 (120)
|..|+++-+.+...+...++.=-. .+ +++.++...+.|++|..|-
T Consensus 93 T~~G~~~~~~~~~~~~~~~~~~~~-~~-~~~e~~~~~~~l~~i~~~l 137 (140)
T d2etha1 93 TEKGKEIFGEILSNFESLLKSVLE-KF-SEEDFKVVSEGFNRMVEAL 137 (140)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHT-TC-CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh-CC-CHHHHHHHHHHHHHHHHHH
Confidence 456888877776666555443111 23 6688999999999888764
No 10
>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=29.83 E-value=30 Score=22.75 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=26.1
Q ss_pred HHHHHHh-hcCC--cccccHHHHHHHHHHHHhhh
Q psy7189 6 QVVVIYW-VGEG--KKYRDFAEYLRELTRAQFVS 36 (120)
Q Consensus 6 l~L~e~W-~D~t--K~gRDLG~~lR~~v~~~F~~ 36 (120)
+.|+-+| ++.. +.|+.+.+.|-+++-.|+..
T Consensus 88 ~~lAirwi~~~a~~r~~~~~~~~La~Eii~A~~~ 121 (139)
T d1husa_ 88 VSLGLRWLVQYARLRNEKTMEERLANEIMDAANN 121 (139)
T ss_dssp HHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence 4678899 7766 47999999999999999864
No 11
>d2lhba_ a.1.1.2 (A:) Lamprey globin {Sea lamprey (Petromyzon marinus) [TaxId: 7757]}
Probab=28.68 E-value=30 Score=22.03 Aligned_cols=42 Identities=17% Similarity=0.179 Sum_probs=31.1
Q ss_pred CCCCCCccccccHHHHhhhccHH--HHHHHHhcchhHHHHHHhh
Q psy7189 68 PRTFQTSASGLNGKECNTLLSQE--FLDAMREDSKGMFSKLFKR 109 (120)
Q Consensus 68 PR~~~SsatGlt~eec~~vLS~e--~l~~~~e~kk~~~kkl~~~ 109 (120)
|-+-.++.++||.+|-..|-++= ......+....||.+||..
T Consensus 1 p~~~~~~~~~Ls~~e~~~I~~sW~~v~~~~~~~g~~~f~~lF~~ 44 (149)
T d2lhba_ 1 PIVDTGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKFFTS 44 (149)
T ss_dssp CCCSSSCCCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 44556778999999999997765 2233445577899999987
No 12
>d2igsa1 d.2.1.11 (A:4-215) Hypothetical protein PA2222 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=27.33 E-value=58 Score=23.06 Aligned_cols=91 Identities=15% Similarity=0.266 Sum_probs=52.4
Q ss_pred HHHHHHh-h------------cCCcccccHHHHHHHHHHHHhhhCCCcChhhHHHHH--------HHHHHHHHhhhhh--
Q psy7189 6 QVVVIYW-V------------GEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLK--------KNLASLKRLSEDI-- 62 (120)
Q Consensus 6 l~L~e~W-~------------D~tK~gRDLG~~lR~~v~~~F~~g~~t~~~d~e~c~--------k~~~SL~rI~~N~-- 62 (120)
.+++|-| + |-+|.....|+-|-++++...--+=.........|. .|-..|.+|-+-+
T Consensus 31 ~q~ieawdipl~lhpefip~gdisk~d~~y~t~la~e~a~~i~~~~~m~~~k~~~c~vei~~l~ss~~~nl~~ik~r~g~ 110 (212)
T d2igsa1 31 AQTIEAWDIPLRLHPEFIPGGDISKADQQYSTLLAQEIANGVTIGFRMVNEKERVCNVEILPLLTSMAQNLDRIKARFGS 110 (212)
T ss_dssp HHHHHHHHHHHHHCGGGSGGGCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHCT
T ss_pred hhhhhhcccceeecccccCCCCccHHHHHHHHHHHHHhhcceeeeehhhhhhhhhcchhHHHHHHHHHHHHHHHHHhhcc
Confidence 4678888 5 778887777777777766543222222222334566 4555666665532
Q ss_pred -hhccC---CCCCCCcc------c------------------cccHHHHhhhccHHHHHHHH
Q psy7189 63 -YNKKY---PRTFQTSA------S------------------GLNGKECNTLLSQEFLDAMR 96 (120)
Q Consensus 63 -y~~ky---PR~~~Ssa------t------------------Glt~eec~~vLS~e~l~~~~ 96 (120)
|.+.+ |..|.|++ . -||-.+.+.+.=++.++++-
T Consensus 111 ~yl~~~k~spn~ypt~vg~~~~~~g~~~q~sg~~vsyg~~l~~lt~~~~qam~lp~~~k~l~ 172 (212)
T d2igsa1 111 GYLDRFKGSPNVYPTDVGFSTDASGGISQESGLLVSYGVNLRTLTPGTWQAMTLPEDIKALV 172 (212)
T ss_dssp TGGGGGTTCSCSSTTCEEECCCTTSSCSTTCBEEETTTEESSSCCHHHHHHCCCCHHHHHHH
T ss_pred cHHHHhcCCCCcCcccceeEeccCCCcCcccCeEEEecccccccCHhHhhhccChHHHHHHh
Confidence 44443 66666643 1 24556666666666666654
No 13
>d1gr0a1 c.2.1.3 (A:14-200,A:312-367) Myo-inositol 1-phosphate synthase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=26.66 E-value=8.5 Score=28.69 Aligned_cols=16 Identities=19% Similarity=0.194 Sum_probs=13.7
Q ss_pred Hh-hcCCcccccHHHHH
Q psy7189 11 YW-VGEGKKYRDFAEYL 26 (120)
Q Consensus 11 ~W-~D~tK~gRDLG~~l 26 (120)
-| +|+.|+|+||.+.|
T Consensus 54 afDVD~~KVGkdlseAi 70 (243)
T d1gr0a1 54 AFDVDAKKVGFDLSDAI 70 (243)
T ss_dssp EEECBTTTTTSBHHHHT
T ss_pred EEecCccccCCcHHHHH
Confidence 47 89999999998765
No 14
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=25.63 E-value=50 Score=20.19 Aligned_cols=45 Identities=11% Similarity=-0.017 Sum_probs=30.4
Q ss_pred CCcccccHHHHHHHHHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhh
Q psy7189 15 EGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSED 61 (120)
Q Consensus 15 ~tK~gRDLG~~lR~~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N 61 (120)
-|..|+++-..+...+......=-. .+ ++++.+.....|++|..|
T Consensus 89 lT~~G~~~~~~~~~~~~~~~~~~~~-~l-~~~e~~~l~~~l~~l~~~ 133 (137)
T d2fbha1 89 LTPKADVLIADIEAIAASVRNDVLT-GI-DESEQALCQQVLLRILAN 133 (137)
T ss_dssp ECTTHHHHHHHHHHHHHHHHHHHTT-TC-CHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHh-CC-CHHHHHHHHHHHHHHHHH
Confidence 4667887777777666655543222 23 678888888888888766
No 15
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=23.36 E-value=32 Score=21.39 Aligned_cols=45 Identities=11% Similarity=-0.030 Sum_probs=29.3
Q ss_pred CcccccHHHHHHHHHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhhh
Q psy7189 16 GKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDI 62 (120)
Q Consensus 16 tK~gRDLG~~lR~~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N~ 62 (120)
|..|+.+-+.+...+...+..--. .+ +++.++.....|.+|..|-
T Consensus 96 T~~G~~~~~~~~~~~~~~~~~~~~-~l-~~~e~~~l~~~l~kl~~~l 140 (143)
T d1s3ja_ 96 TDEGDIKFEEVLAGRKAIMARYLS-FL-TEEEMLQAAHITAKLAQAA 140 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHT-TS-CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh-CC-CHHHHHHHHHHHHHHHHHH
Confidence 455777777766666655543211 23 6688888888888887763
No 16
>d1oqva_ d.24.1.2 (A:) Toxin-coregulated pilus subunit TcpA {Vibrio cholerae [TaxId: 666]}
Probab=22.96 E-value=11 Score=26.70 Aligned_cols=64 Identities=20% Similarity=0.329 Sum_probs=39.0
Q ss_pred HHHHHHHHhhhCCC-cChhhHHH---HHHHHHHHHHhhhhhhhccCCCCC--------CC--------ccccccHHHHhh
Q psy7189 26 LRELTRAQFVSNNK-FTIEEEET---LKKNLASLKRLSEDIYNKKYPRTF--------QT--------SASGLNGKECNT 85 (120)
Q Consensus 26 lR~~v~~~F~~g~~-t~~~d~e~---c~k~~~SL~rI~~N~y~~kyPR~~--------~S--------satGlt~eec~~ 85 (120)
||=.+..++|.-.. -...|+-. .--.|=||-+|+.++-++.|.-.. ++ .+-|||-|||+-
T Consensus 15 VqVAm~qaYr~~G~YP~~~d~~~~~~lT~gLV~LGKIS~DEa~N~fsG~~~~I~s~~~n~a~nKgFaI~vnGLtqeQCrs 94 (171)
T d1oqva_ 15 IQVALTQTYRGLGNYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGLTQAQCKT 94 (171)
T ss_dssp HHHHHHHHHGGGSSCCCCSSHHHHHHHHHHHHHTTSSCHHHHBCTTTSSBCEEEEEEETTEEEEEEEEEEEEECHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcccchhhhhhhHHHHHhcCCcCHHHhcCCCcCCceeeeeccCCccccceeEEEECCcCHHHHHH
Confidence 44455555553221 11124433 344588899999999988764332 11 235999999999
Q ss_pred hccH
Q psy7189 86 LLSQ 89 (120)
Q Consensus 86 vLS~ 89 (120)
|+++
T Consensus 95 lltq 98 (171)
T d1oqva_ 95 LITS 98 (171)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9864
No 17
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}
Probab=22.62 E-value=43 Score=20.99 Aligned_cols=44 Identities=9% Similarity=0.037 Sum_probs=26.4
Q ss_pred CcccccHHHHHHHHHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhh
Q psy7189 16 GKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSED 61 (120)
Q Consensus 16 tK~gRDLG~~lR~~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N 61 (120)
|..|+++-+.+...+......= ...+ +++.-+.....|.+|.+|
T Consensus 90 T~~G~~~~~~~~~~~~~~~~~~-~~~l-~~ee~~~l~~~L~~l~~~ 133 (144)
T d1lj9a_ 90 TEKGKNVYPIIVRENQHSNQVA-LQGL-SEVEISQLADYLVRMRKN 133 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-TTTC-CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HhCC-CHHHHHHHHHHHHHHHHH
Confidence 4568888887777766544321 1122 556666667777766554
No 18
>g1avo.1 a.24.8.1 (A:,B:) Proteasome activator reg(alpha) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.18 E-value=50 Score=23.40 Aligned_cols=63 Identities=13% Similarity=0.088 Sum_probs=42.1
Q ss_pred HHHHHHhh--cCCc--ccccHHHHHHHHHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhhhhhccCCCC
Q psy7189 6 QVVVIYWV--GEGK--KYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRT 70 (120)
Q Consensus 6 l~L~e~W~--D~tK--~gRDLG~~lR~~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N~y~~kyPR~ 70 (120)
+.+++.|+ ---| -|=+||+.|-++|-...+.-+...-.=.++-.++|.+=.++++.. .|||+.
T Consensus 86 ~~~vk~WV~l~IPkiEDGNNFGV~VQe~vl~~l~~ve~~a~~~~~~i~kY~~~Rak~vsK~--~KyP~v 152 (200)
T g1avo.1 86 LNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVTKA--AKQPHV 152 (200)
T ss_dssp HHHHHHHHHHTCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCTTB
T ss_pred HHHHHHHHHHhCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhCCCh
Confidence 45778893 3333 499999999999988776544432222334566666666777665 589987
No 19
>d1tada1 a.66.1.1 (A:57-177) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=21.23 E-value=30 Score=21.83 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=32.8
Q ss_pred ccccHHHHHH-----HHHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhhhh
Q psy7189 18 KYRDFAEYLR-----ELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIY 63 (120)
Q Consensus 18 ~gRDLG~~lR-----~~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N~y 63 (120)
-..++++.|+ .-|..+|..+...++.|.+.- .++.|.||.+..|
T Consensus 59 ~~~e~~~~i~~LW~D~~iq~~~~r~~ef~L~Dsa~Y--F~~~l~RI~~~~Y 107 (121)
T d1tada1 59 MPKEMSDIIQRLWKDSGIQACFDRASEYQLNDSAGY--YLSDLERLVTPGY 107 (121)
T ss_dssp CCHHHHHHHHHHHHCHHHHHHHHTGGGSCCCTTHHH--HHTTHHHHTSTTC
T ss_pred CCHHHHHHHHHHhCCHHHHHHHHhhhccccCcchHH--HHHHHHHHcCCCC
Confidence 4567777777 568888888877888765554 7788888888766
No 20
>d1rwha1 a.102.3.2 (A:4-372) Chondroitinase AC {Arthrobacter aurescens [TaxId: 43663]}
Probab=21.07 E-value=69 Score=24.03 Aligned_cols=46 Identities=11% Similarity=0.134 Sum_probs=36.5
Q ss_pred cHHHHHHH--HHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhhhhhcc
Q psy7189 21 DFAEYLRE--LTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKK 66 (120)
Q Consensus 21 DLG~~lR~--~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N~y~~k 66 (120)
++..+++. .++.|.......---|++..+....+|+.|++|+|...
T Consensus 68 ~~~~~~~rl~~mA~Ay~~pgs~~y~d~~l~~~I~~al~~l~~~~~~~~ 115 (369)
T d1rwha1 68 EMVTTYTRLSQLATAWATPTAAVFGDAAVLAAIKAGLADANTLCYNDR 115 (369)
T ss_dssp HHHHHHHHHHHHHHHHTSTTSTTTTCHHHHHHHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHHHHcCCCCC
Confidence 46667764 56777777666666699999999999999999999754
No 21
>d1wtya_ a.24.16.2 (A:) Probable nucleotidyltransferase subunit TTHA0048 {Thermus thermophilus [TaxId: 274]}
Probab=20.16 E-value=44 Score=21.45 Aligned_cols=52 Identities=13% Similarity=0.143 Sum_probs=35.9
Q ss_pred hhHHHHHHHHh--hcCCcccccHHHHHHHHHHHHhhhCCCcChhhHHHHHHHHHHHHHhhhhhhhc
Q psy7189 2 CYLYQVVVIYW--VGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNK 65 (120)
Q Consensus 2 ~~~fl~L~e~W--~D~tK~gRDLG~~lR~~v~~~F~~g~~t~~~d~e~c~k~~~SL~rI~~N~y~~ 65 (120)
||+.|+-.=++ +|.. --|+-++.+|+.|=. .|++.|-.|++. .++.+..|.+
T Consensus 37 ~WK~lK~~L~~~g~~~~--------spr~~~r~A~~~glI---~d~~~W~~m~~~-RN~tsHtYde 90 (116)
T d1wtya_ 37 AWKTLKTFLELQGLEAR--------SPRAAIRGAFQVGLL---PEDPFWLEMLEL-RNLTNHTYDE 90 (116)
T ss_dssp HHHHHHHHHHHHTCCCS--------SHHHHHHHHHHHTSS---CCCHHHHHHHHH-HHHGGGTTSH
T ss_pred HHHHHHHHHHHcCCccC--------CHHHHHHHHHHcCCC---CCHHHHHHHHHH-hhhhchhcCH
Confidence 56666653333 4322 247778999999865 588999999998 6777766664
Done!