RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7189
         (120 letters)



>d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos
           taurus) [TaxId: 9913]}
          Length = 279

 Score = 26.0 bits (57), Expect = 1.3
 Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 7/48 (14%)

Query: 11  YWVGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRL 58
           YW        D          + F+++        E+ KKNL +LK+ 
Sbjct: 158 YW-------HDPIREDIYRNHSIFLADINQERGVNESYKKNLMALKKF 198


>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA
           {Helicobacter pylori [TaxId: 210]}
          Length = 170

 Score = 25.2 bits (54), Expect = 2.2
 Identities = 5/39 (12%), Positives = 11/39 (28%)

Query: 1   MCYLYQVVVIYWVGEGKKYRDFAEYLRELTRAQFVSNNK 39
           +      V    + +    R+  E LR +        + 
Sbjct: 128 LIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHG 166


>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC
           {Amphibacillus xylanus [TaxId: 1449]}
          Length = 166

 Score = 24.5 bits (52), Expect = 3.2
 Identities = 7/34 (20%), Positives = 14/34 (41%)

Query: 5   YQVVVIYWVGEGKKYRDFAEYLRELTRAQFVSNN 38
             V+    +      RD +  + ++  AQ+V  N
Sbjct: 128 DGVIQAIEINADGIGRDASTLINKVKAAQYVREN 161


>d1ikna2 b.2.5.3 (A:19-191) p65 subunit of NF-kappa B (NFKB),
           N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 173

 Score = 24.4 bits (53), Expect = 4.4
 Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 24/85 (28%)

Query: 7   VVVIYWVG-EGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRL------- 58
           +     +G +  K RD  + + +  +     NN F +  EE       +  RL       
Sbjct: 92  IHSFQNLGIQCVKKRDLEQAISQRIQTN---NNPFHVPIEEQRGDYDLNAVRLCFQVTVR 148

Query: 59  -------------SEDIYNKKYPRT 70
                        S  I++ + P T
Sbjct: 149 DPAGRPLLLTPVLSHPIFDNRAPNT 173


>d1o51a_ d.58.5.4 (A:) Hypothetical protein TM0021 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 102

 Score = 23.5 bits (51), Expect = 5.7
 Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 5/42 (11%)

Query: 8   VVIYWVGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLK 49
           +V+  V E ++   F + +  +     V        +   +K
Sbjct: 66  IVLEIVDEEERINLFLKEIDNIDFDGLV-----FTADVNVVK 102


>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId:
           56636]}
          Length = 237

 Score = 24.0 bits (51), Expect = 6.2
 Identities = 6/33 (18%), Positives = 11/33 (33%)

Query: 7   VVVIYWVGEGKKYRDFAEYLRELTRAQFVSNNK 39
           V+        +  R   E LR +   +   + K
Sbjct: 131 VIRTMLYYPMELGRLVDEILRIVKALKLGDSLK 163


>d1xrsa_ c.1.19.4 (A:) D-lysine 5,6-aminomutase alpha subunit, KamD
           {Clostridium sticklandii [TaxId: 1511]}
          Length = 516

 Score = 23.6 bits (51), Expect = 8.6
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 75  ASGLNGKECNTLLSQEFLDAMREDSKGMFSKLFK 108
            SGL   E   + + E LD M  D+  ++  LF+
Sbjct: 237 CSGLCMPEIAAMGAIERLDVMLNDA--LYGILFR 268


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0487    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 440,160
Number of extensions: 18980
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 18
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.5 bits)