BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy719
         (45 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
           Beta Holoenzyme
          Length = 381

 Score = 42.4 bits (98), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 28/45 (62%)

Query: 1   MGSTIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45
           MGST+RKRK+YEEFLS+VSIL      +   VA  +     E GE
Sbjct: 236 MGSTLRKRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGE 280


>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
           Dependent Protein Kinase
 pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
           Dependent Protein Kinase
          Length = 283

 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/21 (85%), Positives = 21/21 (100%)

Query: 1   MGSTIRKRKLYEEFLSRVSIL 21
           MGST+RKRK+YEEFLS+VSIL
Sbjct: 141 MGSTLRKRKMYEEFLSKVSIL 161


>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
 pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
 pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
          Length = 288

 Score = 42.0 bits (97), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/21 (85%), Positives = 21/21 (100%)

Query: 1   MGSTIRKRKLYEEFLSRVSIL 21
           MGST+RKRK+YEEFLS+VSIL
Sbjct: 143 MGSTLRKRKMYEEFLSKVSIL 163


>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
           Subunit Of Protein Kinase A That Represents The
           Inhibited State
          Length = 291

 Score = 42.0 bits (97), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/21 (85%), Positives = 21/21 (100%)

Query: 1   MGSTIRKRKLYEEFLSRVSIL 21
           MGST+RKRK+YEEFLS+VSIL
Sbjct: 145 MGSTLRKRKMYEEFLSKVSIL 165


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.133    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,056,264
Number of Sequences: 62578
Number of extensions: 20512
Number of successful extensions: 40
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 4
length of query: 45
length of database: 14,973,337
effective HSP length: 18
effective length of query: 27
effective length of database: 13,846,933
effective search space: 373867191
effective search space used: 373867191
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)